LOCUS       DANLZD010000001        39086 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.001, whole genome shotgun sequence.
ACCESSION   DANLZD010000001 DANLZD010000000
VERSION     DANLZD010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 39086)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39086)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39086
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.001"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            84..302
                     /locus_tag="PXE26_000001"
     CDS             84..302
                     /locus_tag="PXE26_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5592634.1"
                     /translation="MARNKRVRDMSNFEIRGELMKIGKSLSQLGIENGLAKTTVRNAL
                     DKPYPKGEQIIAKAIGKTPQEIWPSRYE"
     gene            312..1268
                     /locus_tag="PXE26_000002"
                     /pseudo
     CDS             312..1268
                     /locus_tag="PXE26_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249681.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            1271..1486
                     /locus_tag="PXE26_000003"
                     /pseudo
     CDS             1271..1486
                     /locus_tag="PXE26_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249672.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1605..2150
                     /locus_tag="PXE26_000004"
     CDS             1605..2150
                     /locus_tag="PXE26_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1018 domain-containing protein"
                     /protein_id="HDL5592635.1"
                     /translation="MTDKAKLIQLIHIAKSQLAMDDLSYREMLKRLTNKTSSTKCTVV
                     ELHKVLHELQTKGAKVKYFAKRSKKPTAYSPATGETAVKSQIAHKIRAVWITMGKHGF
                     LNDPSEKALNAYMRKVINNKTRPTILLNVSALEAGDASYMLEILKKWHKRVMIKALSK
                     SCTVDPKISYDELVEWYNEVM"
     gene            2137..2670
                     /locus_tag="PXE26_000005"
     CDS             2137..2670
                     /locus_tag="PXE26_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592636.1"
                     /translation="MKLCRCPICHSDIHLEALVEDEAGRELLGKISQLTHGVAQPMVA
                     YLGLFKPQKSNLNNSRALKILNDVLALYPCSLLLAQALSETVVSIRKKRQQAMENGQK
                     IEPLPNHNYLKSVYETQKVHFAVVRTGKTERETMKAELEKTRNAIAYVQRFVDLGREE
                     VVKNSPEYQIWLAHKPK"
     gene            2835..3194
                     /locus_tag="PXE26_000006"
     CDS             2835..3194
                     /locus_tag="PXE26_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5592637.1"
                     /translation="MELVDIFEEKAPEVLTDLAKHIEVALEEKCQFSPEKAKQIGIDI
                     AQQMAQNWGGEVIYIPRNLLMALNERDMKIYEEFNGNNHRELARKYNVSMQWVYKIVK
                     KVHKDEVARRQMSMFEM"
     gene            3330..3839
                     /locus_tag="PXE26_000007"
     CDS             3330..3839
                     /locus_tag="PXE26_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HDL5592638.1"
                     /translation="MSQNLTFRQIFDRLIGHEGGYVNHPQDPGGETHWGITKRTAVAN
                     GYMYAMKNMTREQAYQIYEKAFWQRYRCAELKPAVAYQFFDAVVNHGFGNASRMLQRA
                     VGVADDGIIGNITLQAINAKSESDLLMLFNAERLKFYTKLRNFPTFGKGWVNRVAGNL
                     EYAAQDNEV"
     gene            3842..4111
                     /locus_tag="PXE26_000008"
     CDS             3842..4111
                     /locus_tag="PXE26_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2644 domain-containing protein"
                     /protein_id="HDL5592639.1"
                     /translation="MAKLFKELLSTNGTLSTTSTVQFFGTLCVFGLMVYAVITQQPYA
                     ESLLNNVLIYLFGATTAKGVVTSYQAKIKGGIHKQQSTFKEEEGC"
     gene            4105..4452
                     /locus_tag="PXE26_000009"
     CDS             4105..4452
                     /locus_tag="PXE26_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2681 domain-containing protein"
                     /protein_id="HDL5592640.1"
                     /translation="MLMQQILGVIGVIAAILSYALFKSWQLKRERKKNAILQAEKQQQ
                     AVEIEQKKAEVKYVYISKKNNEKVTRSSASDIDDKLQQHGYFRDNNRLHGVQSDLSEP
                     CGYAGNETSDSCS"
     gene            4479..4631
                     /locus_tag="PXE26_000010"
     CDS             4479..4631
                     /locus_tag="PXE26_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592641.1"
                     /translation="MKYIKKLRKRWQIWRFLKNHPEVAQRRDLLAIAIKQGVENPVGR
                     ARRREP"
     gene            4631..4966
                     /locus_tag="PXE26_000011"
     CDS             4631..4966
                     /locus_tag="PXE26_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2730 domain-containing protein"
                     /protein_id="HDL5592642.1"
                     /translation="MDLFTVFWESIRANFGFISALLTIVVTAFWLKLDSKYAKKNDLG
                     ELLEIAKSHDNRLTTLETKVENLPSAVDVEKLKTLVTDVKGDTKATSKQVDSISHQLG
                     LLLEAKLKE"
     gene            4968..5264
                     /locus_tag="PXE26_000012"
     CDS             4968..5264
                     /locus_tag="PXE26_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592643.1"
                     /translation="MSLRDLLTQDQRLVILRSLAEAGYDANESIISDCLDLYGHDISR
                     DLVRTHLSWLEEQGLLTLERLRDGYMVASITQRGLDVAQGRVVVSGVKRPRPKI"
     gene            5287..5859
                     /locus_tag="PXE26_000013"
     CDS             5287..5859
                     /locus_tag="PXE26_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3486 family protein"
                     /protein_id="HDL5592644.1"
                     /translation="MSEKNTRGRASKVDLLPPNIKTQLAMMLRDKQYSQSQILEEIND
                     LIRDCGLPDEMLLSKTGLNRYASRMERLGAKIRNAREVAEIWTKQFGEMPQTDIGKTL
                     MEMVKQIAFETSLKLGEQEGGIEPKQLALLSSAIQRLEQAESLSFKREQAIRKEVAQQ
                     AAETAEKVVVQAGLSAETVRTIKEQILGIA"
     gene            5859..7415
                     /locus_tag="PXE26_000014"
     CDS             5859..7415
                     /locus_tag="PXE26_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase family protein"
                     /protein_id="HDL5592645.1"
                     /translation="MALLNNRPLNELAPECRSFLESIHAFNPNELLLGYQKRWIADDS
                     QLKIAEKTRRCGLTWAEAADNALIASTRKSDGGSDVFYIGSNKEMAREYIDAVAMWAK
                     AFNRVAGEIQEEIFEDEDKDILTYVIYFSSGFKVKALSSNPKNLRGMQGVVVIDEAAF
                     HEYLAEVLKAALALTMWGAKVRIISTHNGSENLFNELITDSRAGRKRYSVHTITIEDA
                     CRDGLYQRICQVVTKKTWSPEAEKEWIENLLNDTASEEDALEEYFCVPKFGSGLWLSR
                     ALIERQMSEATPVIRFTAKDGFSLVAEPTRYAEIAEWCELELEPILATLNPDLLHFMG
                     EDFARSGDMTSLVVLAQQQNLVRKVAFIVELGNMPYKQQEQIVMFMLKRLPHFAGGAF
                     DARGNGGYLAEAARDEFSTLIDCVQLSEKWYREHTAPFKAALEDGELEAIPKDADILA
                     DLRSFQVVKGVPRIPDKRTKSADGKSKRHGDTAISLLLAHYASRQLVQMPVEPVSRRP
                     RHSQQLTEGY"
     gene            7534..8988
                     /locus_tag="PXE26_000015"
     CDS             7534..8988
                     /locus_tag="PXE26_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 family protein"
                     /protein_id="HDL5592646.1"
                     /translation="MAKKNNLISEIATRARSIDYWAFGYYLPNPDPILKRMGKDISVY
                     RELLSDGQVRSGVRRRKAAIKGLEWRITTTNNEKVDEQIYQIFNRLPMNNLITEMLNA
                     ALYGYHISEVIWAKEGELFVPTEIIGKKPEWFMFDDENLLRFRTKENWADGELLPDDK
                     FLLTTQEATQDNPYGLGDLSLCFWAATFKKGGFKYWLEFTEKYGSPWLIGKHPRQAHN
                     TDKERLADALEGMISSAIAVIPEDSSVEIKDAAGKSASTDAFEKFLNFCKAEINIALL
                     GQNQTTEQESNRASAQVGLEVMEDIRSDDQAMIEATFNTLLQWIVKYNFNVEQLPKFE
                     FYEQEAINTDQVERDSKLHAMGVRFSKAYFEREYGFEAGDIEVQAVEKAEKSANTTEF
                     SEGQRRTQVPMPVPILEQLEHEGEAMVDDWLQGVRDKLAQADSLEDFQSQLDSLIPEL
                     SFAEYGELLALGSTVAELAGRQSVNDEIKAKRNA"
     gene            8981..10258
                     /locus_tag="PXE26_000016"
     CDS             8981..10258
                     /locus_tag="PXE26_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL5592647.1"
                     /translation="MRKFTFKQQAQYFEKKLNLRTNSYLDILGEEHDYFFVVAGANRN
                     EVLSEFRKAVDEAIHNGETLENFRKRFDEVVAKTGWEYNGGRNWRTRIIYDTNVYGAY
                     NRGRLQQHLELAEDMPYWEYQHNDNAHPRPQHVAWDGLVLRYDDPFWKYHYPIKAYGC
                     HCTVQALDDFDLKHDGKTVSPPPEIEFEQKTVGVRTGNSRVVTVPKGVDVGFTPHNFD
                     NLKAGRAANVDKLLMQKMVTADPIFASKAVSDLLAKEPVAKLHNQAFKNWVNDVANAK
                     GSALSQVENMQLLGVLPVAVIERLQQINLAPQSAIIAITKGDMVHALRELKQNTGIAV
                     PLEFWEKLPAKLQYPNAILLEKQQAETTLLFIYDVAQTKIAVKVNYDATLQDRHGAKG
                     RQKVLLNRAVTGSLFQDTTGLKSSKYEVLLGEM"
     gene            complement(10460..10804)
                     /locus_tag="PXE26_000017"
     CDS             complement(10460..10804)
                     /locus_tag="PXE26_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592648.1"
                     /translation="MMVNAEQAIELVYDLLLSRQWLVTKAEKLPLDPLSEKEAVMFLY
                     TLDQQTEASWLQLTPEQRATANGLIMDFIAKCLTSTKQWLVSDNIVPELQAIEIIKHE
                     IFLSHNSLVMPN"
     gene            10868..11332
                     /locus_tag="PXE26_000018"
     CDS             10868..11332
                     /locus_tag="PXE26_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL5592649.1"
                     /translation="MIKITLNNTQAVKSLQQIANQLEQPRRLYGILGETLKKIHTARF
                     KAEQDPDGNNWKPLASSTLALKRKRGKSTKILRQDGYLADKTAYNVTSDNVEFGSQEV
                     YARLHQFGGKAGRGKKVTVPARPWLGVGDKDEQLLLRKAEWHLGQIIGRMGK"
     gene            11567..12682
                     /locus_tag="PXE26_000019"
     CDS             11567..12682
                     /locus_tag="PXE26_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HDL5592650.1"
                     /translation="MTQIEIFKAGKRYDANGTLIDITPEMLQQTVAAYNPEFHEAPLV
                     IGHPKSNNPAWGWVKALSLEGDVLKAEVDQLDAEFSEMVASGKFKKVSAAFYLPDSPN
                     NPHKGVLSLRHVGFLGAMPPAVKGLKQVEFAEDDDFVVFSEWGVASLFSRFRDWLVSE
                     FGLEKADKALPPHEIDWLKEEAMRSQISKQVHAEQATPEPIFNEPAQPEGEPEMSAEE
                     KEELERLKAENEQLKAEKAQAEAEKMEAELEAEKAGNAEFCEGLVKQGKLAPVAKAAF
                     VQALNNLSVLKAGREPEFNEGEDVVSQFKSAMSQSPQIIQFGEYATADKANPQEAEAV
                     EYAEGTDPVSIEADQKVRAYMKAHNVGYAAAFNAIYR"
     gene            12713..13639
                     /locus_tag="PXE26_000020"
     CDS             12713..13639
                     /locus_tag="PXE26_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HDL5592651.1"
                     /translation="MTTHNLQKLRVQDPVLTELAQGYHNNELVAETLMPTVEIEKEAG
                     KIPTFGRLAFRLPSTVRNLRGSSNRLDPEDIGAIDVALEEHDVEYAIDYREENEAIFS
                     LRQFALNTTQDVIALGREKAVATLALDESRYETDNKVTLSGTSQFSHKDADVFKVFDT
                     AIRAVKRAIGRKPNVCVISGDVWAALKEHPAVVEKLKYSQVAIVTPEVFAKLIGIETV
                     KIGEAVYEESGQLKDIWSKDIVVAYVAPRSTGGKGTVYEPSYGYTVRRQKGLFVDTYK
                     ESGGKIEVVRTTDIHKPHLVGAAAGYLIKAAV"
     gene            13708..13989
                     /locus_tag="PXE26_000021"
     CDS             13708..13989
                     /locus_tag="PXE26_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592652.1"
                     /translation="MAKFIVLHTPILHDGKRYEVGAEIELTAEQAENNAINLKAVEAV
                     PKPPKNASKPEDEPKPEGEPKPEDAVTEDDVKLAEAKIAEAEQPKGNKK"
     gene            13989..14423
                     /locus_tag="PXE26_000022"
     CDS             13989..14423
                     /locus_tag="PXE26_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 domain-containing protein"
                     /protein_id="HDL5592653.1"
                     /translation="MYVQIDELLTAFSRKIVVQLSNDEPTATEPDLKMLETAVKVANE
                     RIDAALRSRYTLPLADVPTLINQHALTLARYWLYARRPETKMPDTVKETYQQAVKELE
                     QIATGKLHLGIAESSQILEDDVLADNSEYEVRANARIDTSRY"
     gene            14429..14926
                     /locus_tag="PXE26_000023"
     CDS             14429..14926
                     /locus_tag="PXE26_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gp37 family protein"
                     /protein_id="HDL5592654.1"
                     /translation="MSATQPILEDICQHLRQALPEWEVELFPNDPSTYHLSHINGAVL
                     ISYLASKFEKPRTTQAVLQVRHVQIALTVLTRDLHNDVGALDLLDKLRLLVVGFKPQN
                     CGECWLIDEFFNGSSEETGLWQYQLILQTETQQVQHQAVENLPKFVTAHLRRQDQPGS
                     PGLKT"
     gene            15011..16396
                     /locus_tag="PXE26_000024"
     CDS             15011..16396
                     /locus_tag="PXE26_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath subtilisin-like
                     domain-containing protein"
                     /protein_id="HDL5592655.1"
                     /translation="MTFHHGSETERVNGGSVPVSVVDSAIIGIVGTAPIGAVNELTVC
                     LTKKDFAKFGTILNQGFTLPDAFDILARYAAGKVYVVNVLDPSRHRTTVTDEVLTLDR
                     NTLTAQTAKTGIIAVTRVKDGANVLNADRYSVDLQTGVVTFVSAPSAPKISYIYADPS
                     KVTEEDIKGGVDSLTGKRKGFELLRDGFNLYGADAKILICPEFDKTASCAAALATLAD
                     QLHAKAYIQLPKGTSLSKAIQGRGPAGTINASASNENVRHFFPYALGSSNTLESLATH
                     AAGLRMLIDVEKGYWFSTSNKELKGVIGLEIPLTARVDDKQSETNLLNAVGITTIFNS
                     FGTGFRLWGNRSSNFPTVTHISNFEVASRTGDIIDESIRQAELQFIDLPIDDALLDSF
                     LETIDTFLRTQKSLVGYSVSLDYEYDLVDAFSRGQVPIVYEYTPKIPGERISNKSVMT
                     RKYLANLVSQR"
     gene            16407..16922
                     /locus_tag="PXE26_000025"
     CDS             16407..16922
                     /locus_tag="PXE26_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HDL5592656.1"
                     /translation="MSIAINQIVNGNVYINGNSQMGRVNEVKIPDIEFEFIEHKGLGM
                     HGVIKLPAGTNAIEAEITWDSFYPEVRAVMLNPYKYTQLQIRSNLQVFNSQGLAAEEP
                     MVTIMNVSAGKIGGTGHKNKENAEFADTLNVHSIKQTVAGRELLFIDVLANIYRVNGV
                     DVLQKFRTNIG"
     gene            17018..17332
                     /locus_tag="PXE26_000026"
     CDS             17018..17332
                     /locus_tag="PXE26_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HDL5592657.1"
                     /translation="MANAAQQVLTNLRVQTTYKLQYPIALPDGRVIETLDVRRPKGKD
                     FRLLDEKGFDPEKDGVKILRFYIQQLTTLVPEDIDELDAADIKGLNNLLEDMLIEGKS
                     DK"
     gene            17329..17481
                     /locus_tag="PXE26_000027"
     CDS             17329..17481
                     /locus_tag="PXE26_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005658873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HDL5592658.1"
                     /translation="MSELDTVYADLAWWFKFSPSELLELDLVDIPKWVEQMNRQIKAG
                     YGQILR"
     gene            complement(17460..17762)
                     /locus_tag="PXE26_000028"
     CDS             complement(17460..17762)
                     /locus_tag="PXE26_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592659.1"
                     /translation="MLTKLNNRITEWAGFEACVTRTECTAKWLLAVALVGWSIFYWLD
                     AIQSIQSLSEGVSFVLIYGLILTILAWVGVYLAWGVAILLTLATEPFIWLYRKICP"
     gene            17810..20467
                     /locus_tag="PXE26_000029"
     CDS             17810..20467
                     /locus_tag="PXE26_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5592660.1"
                     /translation="MANNLAIGMVIGASLSSGFHGAFSGAKKKLEQLEQAVAKNQQSH
                     SKLGSELTALRSKQATLYAEMSRASSKGGAGLALMQQEYKKIGKEIANISREQRKWST
                     ELEKSIAKQTKLRNAMERHTQAKENRDELKGKIIGTVASAAMGVGVMKTYMEQEEAAN
                     NLKISMLKADGSFGKFEEIGKIADTLGTDLPGTKKDFYKLAMALKKQGVSDDVLTGGA
                     LKTSAELNVLLDMDQESGGEFLAKFMESHRLNENELPQAADYLQRAMFAGGLSKEQMY
                     ESMKYYAPKLNSMKLTGAENTEKVLAIEAMAGQQGLEGSTFGTGLNMMLSRMNKGPEM
                     LKAAAKGMKAEAREMMEAVGVEFNFWDKNGSFKGIDGMLAEMTKFEKIRKKFGDKGVG
                     LVAEELFGIEGGRLADILAMKGQKGLDEMLSKMREQASLQDRINLKTNTLGAALESLG
                     GAWETFVGDIGSVFAEDIKGFSKGLQSAVEWLVPFVSKHKEAIKFVGGLVAGLVILRG
                     VLQAGSFVIQTVTMAMNALKIAAMTNPIVLVIGAIAAGAYLIYSHWDSIAPWFANLWQ
                     NVTAYFNQFWTWVKGVWSGVTDWVSSVWNGVATFFGQLWTTITSLFSVAWTNIQTIWG
                     GATAWFSGLWDGIKSAAFGMFDSISQKVSSVVASIKSFLGFGDDVDKMGAKIGNVATQ
                     VISKEHSGQLSKTADMAANTGFSSGGFTGQGGKYTPAGIVHKGEYVMTKEATSRLGVG
                     MLDSLNYGGAMGFTQPVLQPILGKQKGFFGSLWDDVKFGANFVGNLLGLNQGSLKTPD
                     FNPNATNASGQNSSIFSNYEPLNRNAVTQQESSQAPQIVVNFNPTINVNGNATQEAQS
                     QIMQQLQMSAYEFEKLLNRVLDQRSRRAY"
     gene            20477..21400
                     /locus_tag="PXE26_000030"
     CDS             20477..21400
                     /locus_tag="PXE26_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5592661.1"
                     /translation="MYFMLGNIAFEPVNLTEFSEQHTAEFAEHAVLKGKPRLQAMGEK
                     LNELNFSLRLHHTIGGVESRYQALLEAKAKQAALALIWGSRYKGDYVIVDISSTTLFT
                     DGRGNALAREMQISLKEFVGDNDGGVLGEALNFGGGSLLGSILPSGAVTTLSQIKTAV
                     SRGVELYNSGKRLVDEVQNTVAIIRQLKNDPATALAYLPAALANLDGALGHFGNLTGS
                     SATLGGLQEKLPAAVVFSEEIGEIYQSLQTMRSSLGNASANSWDNWFTPAESALTEVT
                     DSFDHLAKPVAKMTAWIVLRTDEEAENDTVA"
     gene            21384..21611
                     /locus_tag="PXE26_000031"
     CDS             21384..21611
                     /locus_tag="PXE26_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HDL5592662.1"
                     /translation="MTQLLKHIVKQGERWDNLSYQYYGNAFEYGRIIDANPHIGFCEV
                     LPIGVTIYIPVLNVKPTNNENMPPWLRGRDA"
     gene            21604..22668
                     /locus_tag="PXE26_000032"
     CDS             21604..22668
                     /locus_tag="PXE26_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592663.1"
                     /translation="MRNVPKPDFSLFYEKTNITAEIEPHLVQLTYIDHLEGQSDELTV
                     EFEDIQGKWIRQWFPTQGDKLKAAIGYQGEFLTDIGEFEIDEVEYSYKPSTINLKALS
                     TGISKANRTLKPKAYENTTLAQVVAKVADNLKLKVVGKIKAIPIKRITQYQERDVEFL
                     ARLAREYHHSFKIVGNQLVFTDKSELGQSEPVLMLEERDTISLRLRDRIKDTAKAVEI
                     SGYDTSGKKVVKKRKKAKALRPNIKQAKSASEDTLKIITRGESQEQIDARGEAALATQ
                     NEDQAAGDIELIGNPKLVAGATILLRNFGVFSGKYLIKSSRHTISRSGGYTTHIEVRM
                     LEFIADDLITLGMEAGNANA"
     gene            22655..23191
                     /locus_tag="PXE26_000033"
     CDS             22655..23191
                     /locus_tag="PXE26_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL5592664.1"
                     /translation="MQTHNFGATYQEGIVSAVDPKTHKVRCKIPALEDLETAWLSFLT
                     PNAGGNQFYCLPDVGELVAMLLDAQGEGGCVFGAIYNEQDPTPVADSDMWVKKFSNGT
                     EISHNRKTGDVVVKTNGHLTATAQGGATINANTVVNGTLHATGKITSDEEVSAPVVKQ
                     GTVELGTHKHGGSPEPNK"
     gene            23246..23608
                     /locus_tag="PXE26_000034"
     CDS             23246..23608
                     /locus_tag="PXE26_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HDL5592665.1"
                     /translation="MNRQTSIQLTHWQLAPSTDTVEVVQGIDDIHLCIVNILSTQKGT
                     DILRPEFGSDHFRYIDYPEDVAIPNFVREITTALQKWEKRIEVEEVLVDGSAPHFIFT
                     VMWHLTDDVYREIYRTTV"
     gene            23618..24721
                     /locus_tag="PXE26_000035"
     CDS             23618..24721
                     /locus_tag="PXE26_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDL5592666.1"
                     /translation="MTEAIKIIDDDVKTVLAEAIADYEKRTGKILQPAHIERSIIQTY
                     AYREQLLRKGINHAFLQTFPQFATGIALDLCGETFGCYRLRDKPARTLLRFSVSGEHT
                     AIVIPKGTQVAINDELYFSTLNDDVITPLITYVEIDAECNQVGVIGNGWESGRVSKLK
                     TALATNYKVTVENIDITSGGLMQEEDEPYRKRILAAPEAFSNCGSIAAYDYHVRSVSQ
                     DIADVNISTPRGGLVRIAVLTQKGLPDTRLLDDIKKHVSAERLRPLCDMVEVIKPTER
                     RYQITARLILLDGYREDLVKAKAREALQLYLSDKTKKLGLDIVPSAIISALRVEGVYD
                     VNLIQPVKTIINETEWANCTAISVEVEEERRDG"
     gene            24714..25280
                     /locus_tag="PXE26_000036"
     CDS             24714..25280
                     /locus_tag="PXE26_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5592667.1"
                     /translation="MASLHYADIIVRDPKYKALADLSKRLNLLDTSQIMTTLVDLLGD
                     ECIPLLAEKWSVTGYDGLLVADSENSKRALIKRAIELHQLKGTPWSIREVLRRLGFGE
                     VEIDEGLKNRLYESTYVSGIPENERWAHYAIRLSNPITNEQARNIRKVLRNFAPARCS
                     LAVLDYKADPIRYNNKATYNGTYNHGSS"
     gene            25290..27569
                     /locus_tag="PXE26_000037"
     CDS             25290..27569
                     /locus_tag="PXE26_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HDL5592668.1"
                     /translation="MAGVQETAQWENHVYRIEENDPVHGGENGVTNKPIKHLANRTLY
                     LRRLLTEAGQRINPKKITATSKNSNDLTGHTHEIDHASLTQKGIVQLNASIQSTSTTE
                     SATPSAVKAAYDKAATAEQKATLANEKVEAIKVGGRNLLIQSNTPHNGNAYSVRYALA
                     EAPKVGEEIVVTLWGELGSQRTGIGVYNSQGATELAKLVKIRDGVYQGKGIWRKPMSE
                     GRERTPNDTHLNVYFYPKTATDNNRIERIQLERGSIGTDWTPNEADLKAEISAIRTKL
                     IPVRGGNVATTLNAAKRSDWFREMQIPYQSGWGYYTQAFHNSGTQHNYSNLPLTGRYY
                     FIAELYHNSGYSHLRITYPSLKRTFESAINLNNEDLILDWREVVFLKDGLYQGTFKTT
                     GTLESAYRLRAARDDERYQPYLQMVDMGYDLANPPVGKNKIIGSVDYYVKNGTSESSK
                     ATMMAAAMPDKNVFWEVALWNAAQQRNVLFKGYSKTNNLSIGKTTDNERDRVQVNGTI
                     QATAPADNANNDQVPTTAWVRKMAKILADGKVSKAGDTMTGHLFIKNGEYSAVHTYNT
                     SGWFAKWEAAPLSDSHFAAIVYANDRETVINRVLIPKKNGTVALINDIADTVRAAVSR
                     SDKSRSRTFPLQTGKKYTTTGSVTIYPDGRIVQIFHLKNIKAAWFDYEASAVGDRHRV
                     VNIPLWTAMPNKIFDVDVKTVRPSNNASTYYIEAAEWLSAWQIYGNDTNKSSVNINLS
                     RFRGGKDEDMDLYVTVEGY"
     gene            27570..28172
                     /locus_tag="PXE26_000038"
     CDS             27570..28172
                     /locus_tag="PXE26_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592669.1"
                     /translation="MAYFVNVIDEQGNYELIDDEFIGLYPDLDFNTLPKLTDKQYQTY
                     LAKANGKERFVNGEFVYEQIKVDMQAVISAEKSAKLAEINQKAQAFINDLAKYNETPK
                     FERDTWLEQAKEAKAWVADPTVQTPTLELIAQMRGIPLDTLRQKAYEKAMAYQTVAAI
                     VAGQRQGYEDRLEQAETLEQIQAIEPMYQLPQGANNEQTD"
     gene            28156..28431
                     /locus_tag="PXE26_000039"
     CDS             28156..28431
                     /locus_tag="PXE26_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592670.1"
                     /translation="MSKLTKLKSWSYHVLIAIDQLFNALTGGAADETFSSRCYRGAVL
                     AENPKKRWRFWHSFLNCLFLDPKHCYAAYKAEVHRKQYPKAFRLGGI"
     gene            28431..28718
                     /locus_tag="PXE26_000040"
     CDS             28431..28718
                     /locus_tag="PXE26_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592671.1"
                     /translation="MKKQNLKLVRGDDVSFRFSIKDSTGQPLALKDLWFDLHLVSYQG
                     EVLIALSTDDGSIETAEAGQMVLHFSHQQTARAEWTSANYDLQLTHDYTRV"
     gene            28728..28892
                     /locus_tag="PXE26_000041"
     CDS             28728..28892
                     /locus_tag="PXE26_000041"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592672.1"
                     /translation="MTSIIELDLTDDLIIEVQLDSTIITGDSFLANLPDLLQIYNQAK
                     SDSSKELNND"
     gene            28885..29589
                     /locus_tag="PXE26_000042"
     CDS             28885..29589
                     /locus_tag="PXE26_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592673.1"
                     /translation="MTKHKNHENHPIAITFYQLGKDVGDINRRLAVIEQREQSAQPSQ
                     PQAEAVTMPQQDAVAINNINAVLEAVEKYKTFEKYNTQWQERFEKFLSRNPNDYELSE
                     EQRQKLYHTMCQHLWQVNFTEINSKQYELPIPQQFQGKFGYIVKTSGGSTEISFELLS
                     ETHSTYLYPDSYIPEGGGDVMLKPAYIYLVIPDLVAMREPEVVGVSPLKLNILQKHLL
                     TPQKLQEQKPLNTKAN"
     gene            29758..29877
                     /locus_tag="PXE26_000043"
     CDS             29758..29877
                     /locus_tag="PXE26_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5592674.1"
                     /translation="MNKSLVALAVAAMASKAQTKQQASKQASKQASKQASIVR"
     gene            29874..30713
                     /locus_tag="PXE26_000044"
     CDS             29874..30713
                     /locus_tag="PXE26_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592675.1"
                     /translation="MEKVFKQAPLPFSGQKRMFLSHFKQVLNANIEADGKDWTIIDVF
                     GGSGLLAHTAKREKPLARVIYNDFDNYAERLNHIKETNQLRQEIYQIVDEIIPKNKRI
                     SNEIKAKIINKINDFEGFKDLKCLSSWLLFSGEQVATLDELFKHDFWHCVRQSDYPEA
                     TGYLDDIEVVSESFHQLLPRFHDKEKVLLILDPPYLCTRQESYKQENYFDLIDFLRLI
                     DLTKPPYIFFSSTKSEFIRFIHYMVQNRKENWQAFEGAERIVVNASASYNGKYEDNMV
                     YKF"
     gene            complement(30750..33188)
                     /locus_tag="PXE26_000045"
     CDS             complement(30750..33188)
                     /locus_tag="PXE26_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S6 family igA-specific metalloendopeptidase"
                     /protein_id="HDL5592676.1"
                     /translation="MKHTFKLSLLATSIAISLSPTLLASIVRGDVDYQYFRDLAENKG
                     KFFVGATNIPVIDKTGKNIGTFLQVTPTKQVEVESNISPKPNVSLSECFDNESLPGCY
                     EFLYGGGDEDSNDLPVFETVTGETMSIPMIDFSSITRQTGIATLVNPQYVISVNHNQG
                     YRDIQFGDSSSEKADDHHYNYSVVRRNNYMPDPNKERTDLGKGIEKRERNDEGEKLIL
                     DGSGNPTPRWDYHAPRLSKLVTEVAPANEIERTTENVQDFYSVFSDPFIFPMFIRAGS
                     GRQAVVNNERDRLNNGRIEVGNGPFLTGGSVLPVTNGDPSVPGSDFNSRILVAKTENN
                     TINDVFKDHGYGPLTTLGLPGDSGSALFGYDVRTKKWVVLGVYSDYFSENNTLGGDVY
                     KSYWNYHHPHYVRALEKENNAGAINANGARLTWTPSGNTSSIVGGNAPLTVNLADTSL
                     PTLQGHNGNTGDNPWNPQLQHGKTFHILGENNTLSLTENINQGAGAIHFHGNTTVEGM
                     KAGITWLGAGVDIDKDKNVIWKISNPAGDRLSKIGQGTLTINGKGENKGSVSVGDGTV
                     ILNQQADENNKKSAFSELGIVSGRPTVILNSSDQMDPNNIYFGYRGGRLDVNGNDLTF
                     RRIQNSDEGAMVVNHNTAQTANITLTGIVSPTIDQVKVQAITSPDQVSRHLDKDIFTY
                     QRFPHLPTNFIRLKKPLSVAEITAIFNARKVFIDLDFATGLIRENEYFEVLKVTDESA
                     AKQQILAEKIKAAEGTVQGFNGYFGETDPSKTNGRLNITMNSNCSEPTKLRNATTKTT
                     KENRSFTFLILMVF"
     gene            complement(33508..35274)
                     /gene="aspS"
                     /locus_tag="PXE26_000046"
     CDS             complement(33508..35274)
                     /gene="aspS"
                     /locus_tag="PXE26_000046"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HDL5592677.1"
                     /translation="MMRSHYCGALNRSHLGQTVTLSGWVHRVRNLGRFIFMQIRDREG
                     IVQVFFDEKDEALFKQASALRSEACVQIQGEVIARDESQINKEMATGEIEVLVKNLVV
                     YNNAEVLPLDFNQNNTEEQRLKYRYLDLRRPEMAEKLKTRAKITSFVRRFMDDNGFLD
                     IETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFR
                     DEDLRADRQPEFTQIDVETSFMTAEEVRALMEAMIHGLWKETLGVDLGKFPMMTWNEA
                     MTRFGSDKPDLRNPLEMVDVADILKSVDFKVFSGPANDPKGRVVALRVPNGAALTRKN
                     IDDYTQFVGIYGAKGLAWLKVNDMNTGLEGIQSPVAKFLNEEVLKALVKRLNLQKDDI
                     VFFGADNWHVATNAIGALRLKVGNDLGLTDTTAWKPLWVIDFPMFERDDEGNLSAMHH
                     PFTSPKELSPEELVQDPENAVANAYDMVINGYEVGGGSVRIFSQQMQQTVFSILGINE
                     EEQKEKFGFLLDALKFGTPPHAGLAFGLDRLTMLITGTDNIRDVIAFPKTTAAACLMT
                     EAPSYANPKALEELAIRTIPQE"
     gene            complement(35380..36291)
                     /locus_tag="PXE26_000047"
     CDS             complement(35380..36291)
                     /locus_tag="PXE26_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine exporter LysO family protein"
                     /protein_id="HDL5592678.1"
                     /translation="MLYGLAIVLIPLFLGYLITLKNHRHMAIVNRVVSLCLYLILLVM
                     GISLGQIDNILTELPQIGGTAFSLVVILLLSNIIGLVIYDKLQPMKRDKVNQDQLPSR
                     LHLLIDSFKLIGITLLGGIIGYFTKGVVDFPLHASTYVLEVMIFGVGIQLRNSGIPLR
                     EVFFNKRGIYTSIVMVASSLIGGVISAFTLDLSLAKGLTFASAFGWYSLSSVLVNDAW
                     GPIYGSIAFFNDISREILCLFLVPLFMRQFPSTAVGIGGATSLDCMLPIIQKSGGIQI
                     VPLAISFGFIVNLAAPLLLAVFIGLEG"
     gene            36414..37496
                     /gene="dinB"
                     /locus_tag="PXE26_000048"
     CDS             36414..37496
                     /gene="dinB"
                     /locus_tag="PXE26_000048"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HDL5592679.1"
                     /translation="MSIQAKHKRKIIHIDMDCFYAAVEMRENPALVGKPVAVGGNANQ
                     RGVLTTCNYEARKFGLHSAMPTATALKKCPNLILLPVNMALYKSVSAQIHEIFHRYTD
                     VIEALSLDEAYLDVTECERYFGSATWIAQAIRNDIFNELHLTASAGVAPLKFLAKITS
                     DQNKPNGQCVITPDDVQNFVKNLPLAKIPGVGKVTNEKLKQLGFETCGDIQQAEKAVI
                     YRAFGKFGQRLWDFSHGIDERAVEPYRERKSLAVENTLLHDISTLEQAEKIVADLFDK
                     LVFRLQRNWGDTPLTEFKKLGIKLKFDDFSQTTLERTTDGFAYERFGELLQQIFTRRK
                     ERKVRLIGLSVHFPEKKVNKQLNLWE"
     gene            37584..38453
                     /gene="htpX"
                     /locus_tag="PXE26_000049"
     CDS             37584..38453
                     /gene="htpX"
                     /locus_tag="PXE26_000049"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HDL5592680.1"
                     /translation="MAKRVILFLLTNLAITFVLGIVLNLIFKVTGIQGQSTAGILVLS
                     LVFGFSGSLISLFMSKSMALRSVGAEVITQPRNEAEQWLFNTVQRQAQQANIPMPDIA
                     IYHSADVNAFATGATKSNSLVAVSTGLLNSMTKDEAEAVVAHEVAHIANGDMVTMTLL
                     QGVLNTFVIFLARIISTMAASSRDENGNSSTNTLVFWVVDIVLQMVFGVLATMIAMWF
                     SRQREFRADAGSAQLVGKEKMIAALQRLQRVHEPQEMEGSLAAFMINGSRGKELFMSH
                     PPLEKRIEALRNL"
     gene            complement(38507..39001)
                     /locus_tag="PXE26_000050"
     CDS             complement(38507..39001)
                     /locus_tag="PXE26_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL5592681.1"
                     /translation="MTEYLTSFFSLFFSEQNQLFTMFLSGFLSATLLPGNSEIIFTTL
                     ASQHLITYGSLSSFSLFNLLLVATLGNSLGSITTYAIGLLLPRPQNTTNRYSQWALAK
                     SEKYGVLVLLFSWLPIVGDIFCGIAGWLRFSLWQSILFIVIGKLLRYLFLLATLYSVL
                     PHIL"
BASE COUNT        12017 a         7820 c         9009 g        10240 t
ORIGIN      
        1 attcactata ttattcgttc tgtagttaaa tgatttacat catttaagta gtttctaaaa
       61 ctaactttca aggatctcac aaaatggcaa gaaataaaag agttcgagat atgagtaatt
      121 tcgaaattcg tggtgagctg atgaaaatcg gtaagtcctt atctcagtta ggtattgaga
      181 atggattagc aaaaaccaca gttcgtaatg cgttagataa gccatatccc aaaggggagc
      241 aaattattgc aaaagcgatt ggtaaaacac cgcaggaaat ttggccctct cgttacgaat
      301 aaggagcttt tatgaaggaa tggtttttag ccaaagaaat cgcaggatta tctggagttc
      361 cagaattacc gaatagcgtt tcaagattgg caaccaaaga aggatggcaa aaacgacaaa
      421 ttcaaggtgt aagaggtgtt acttacgaat accacctcac cagcctaccc attgaaaccc
      481 aacaacaact tagactaaac gccgcccttg cggtaatacc gcaagcggca gaactacaac
      541 ccaaacgaga cgaccccgca cttatcgcaa ggctcaataa tgccaccgat aaaggcaggg
      601 ataaagcaaa aggcaaggca gaagcctgta tgcagttgca agcctttctc gaccaagggt
      661 ttagttatac gcaggcagaa gcgggagcgg caaccgctaa aaatgtgtcg caaggttctt
      721 taaaaaattg gtactacaaa gtgaaaggtc accccgtcca tttatggcag gcgatcttaa
      781 tttccgaaag cggtaggagt aaaaagccgc agctgaaagc caagattact gaagaagcgt
      841 gggactgctt tttggcggat tacctccgcc ctgaaaagcc ggatttacgg gcaagttacc
      901 gccgaaccca agccatcgcc aagcaatacg gctggcaaat agcaagttta cagactttcc
      961 aacgccgagt gttggcggaa gtgccttacg aggtgatttt gctcaaacgg gaaggagcaa
     1021 atgcggttgc caagttagtg ccggcactac aacgcacggt gaaagatatt ctcgcaggag
     1081 aatggattaa cggcgatggc tatcaacaca atgtgtttgt gaaatggcac accggcgaga
     1141 ttgtccgccc taaaacgtgg ttttggcaag atgttcgcac ccgcaagatt ttaggttatc
     1201 gaacatcgat ttcggagaat actgacagca tacgccacgc attaatggat gtgattttta
     1261 acgtaggcat gacgatcaaa gccaattctg ttaccaagca ttgttggagt atagagaact
     1321 cccgttagac acatttcttg cagagtactc agatgatgag gatatgacag agtcagagtt
     1381 tattgagtta atgcttgatg aattagagtg gattatccgc agagctaaga atgctaaacg
     1441 gtttgttaaa aaacgacaaa aaacgatgag ggaggaaatt atgtaacagc tcaacccaac
     1501 caacgccaca tcatccgtct agctgagaaa caggtgtggc gtttgtttta agtgggcaat
     1561 caaaagcgat aacgttttta attgtttatt tatcggagta acaaatgaca gacaaagcca
     1621 agctaatcca gcttatccat attgccaagt cgcaactagc aatggacgat ttaagctacc
     1681 gtgaaatgct gaaacggctc accaataaaa ccagctcgac caaatgcacg gtggtcgagt
     1741 tgcacaaagt cttacacgaa ctgcaaacca aaggagcaaa agtaaaatat tttgccaaac
     1801 gcagcaaaaa accgaccgct tacagcccgg caacagggga aacagcggta aaaagccaaa
     1861 ttgctcataa aatccgagcg gtatggataa caatgggcaa acacggattt ttaaacgacc
     1921 caagcgaaaa agcattaaat gcttatatgc gtaaggttat caataataaa actagaccaa
     1981 caatattatt aaatgtctct gcattagagg ctggagatgc aagttatatg cttgaaatcc
     2041 tcaaaaaatg gcataaacgt gtgatgatta aagccctaag caaaagttgc acagttgatc
     2101 caaagataag ctacgatgaa ttagtggagt ggtacaatga agttatgtag atgcccgatt
     2161 tgccacagtg atatacacct agaagctctc gtagaagatg aagccgggcg tgaactactc
     2221 ggcaaaatca gccaattaac acacggtgtt gctcaaccga tggttgctta tttaggctta
     2281 tttaaaccgc aaaaaagtaa ccttaataac tcaagagcct tgaaaatact caatgatgta
     2341 ttagcactct acccttgctc attgctactg gctcaagccc tatctgaaac ggtagtaagc
     2401 atacgcaaaa aacgtcagca agcaatggaa aacgggcaga aaattgaacc gctaccgaac
     2461 cataactatt taaaatcggt gtatgaaacg caaaaagtcc attttgctgt ggtgagaacc
     2521 ggcaaaaccg aacgcgaaac aatgaaagcc gaactggaaa aaacacgcaa tgcgattgcc
     2581 tatgtgcaac ggtttgttga tttaggacgt gaagaggttg ttaaaaatag ccctgagtat
     2641 cagatttggt tagctcataa acccaaataa cacaagccac caaaaggtgg ctttttaact
     2701 ttttgaaagt gcgataaaac ctgatttaaa caggctttaa acgggtttta agattgagtt
     2761 taaaaaaata tttcacaaaa taagaatggt tttttataca ataaccgaaa cggtttttgg
     2821 ataggaaata gacaatggaa ttagtggata tttttgaaga aaaagccccg gaagtgttaa
     2881 ccgatttagc caaacatatt gaagtcgcat tagaagaaaa atgccaattt agccccgaaa
     2941 aggcaaagca aatcggtatt gatattgccc aacaaatggc tcaaaactgg ggtggcgagg
     3001 taatttatat tcctcgcaat ttgttgatgg ctcttaatga gcgagatatg aaaatttacg
     3061 aagagtttaa cggtaacaat caccgtgaat tggctcgtaa gtacaatgta tcaatgcagt
     3121 gggtatataa aattgtgaag aaagtccata aggacgaagt tgcccgcagg cagatgagta
     3181 tgtttgagat gtaaatcatt ttttcccagc cctgatcatt ttcagggctt tttgtgtatt
     3241 aaaagaacgc agtctttaaa cccgtttaaa atcaattttt cagcaaattc tttaaactcc
     3301 ttttaaagca attttaatag gagtgtgcta tgtctcaaaa tcttaccttt cgccaaattt
     3361 ttgaccgttt aatcggacac gagggcggct atgtcaatca cccacaagac ccgggcggag
     3421 aaacccactg gggaattacc aaacgtaccg cggttgctaa tggttatatg tatgcaatga
     3481 agaatatgac ccgtgagcaa gcctaccaaa tctacgaaaa agccttctgg caacgttatc
     3541 gttgtgcaga gcttaagcca gcagttgctt atcaattttt cgacgcagtg gttaatcacg
     3601 gttttggtaa tgctagtcgt atgttacagc gtgcagtagg cgtagcggat gatggcatta
     3661 ttggcaatat taccctgcag gcaattaatg caaaatctga aagcgatctc ttaatgctat
     3721 ttaatgccga acgtctgaag ttttacacaa aattacgcaa cttccccact tttggtaagg
     3781 gttgggtcaa tcgtgtggca ggcaatttag aatacgcagc acaagataat gaggtttaaa
     3841 aatggcaaaa ctatttaaag aactactctc aaccaatggc acattatcca ccactagcac
     3901 cgtgcagttt tttggcacat tgtgtgtatt tggtttaatg gtttatgcag taattaccca
     3961 acaaccttat gccgaaagcc tattaaataa tgtgttgatt tatctttttg gggcaactac
     4021 cgctaagggt gtagtaacca gctatcaagc caaaattaaa gggggtatcc ataaacaaca
     4081 aagtacattt aaagaggagg agggatgtta atgcaacaaa ttttaggcgt gattggcgtc
     4141 atcgcagcaa tattgtctta tgctttgttt aaaagctggc aactaaaacg tgagcgtaaa
     4201 aagaatgcca tattacaagc tgaaaaacag caacaagcgg ttgaaattga gcaaaaaaaa
     4261 gcagaggtaa aatatgtgta tatatcaaag aaaaacaatg aaaaagttac tcgcagctct
     4321 gctagcgata ttgatgacaa gttgcagcaa cacggttact tccgtgacaa caacaggttg
     4381 cacggcgttc agtctgattt atccgaaccg tgcggatacg ctggaaacga aacgtcagat
     4441 tcttgctcat aatctgactt ttgaggaaat ttgccaaaat gaaatacatt aaaaaattac
     4501 gtaaacgctg gcaaatttgg cgttttttaa aaaatcatcc tgaggttgca caacgccgag
     4561 atttattagc gattgccatt aaacagggcg tagaaaaccc tgtagggcgt gcaagacgga
     4621 gggagccata atggatttat ttacagtctt ttgggagtct atccgtgcta actttggttt
     4681 tatttctgcg ttactcacca ttgttgttac ggcattttgg ctcaagctag atagcaaata
     4741 cgccaagaaa aatgatcttg gtgaattgct ggaaattgcc aaaagccacg ataaccgctt
     4801 aaccacctta gaaaccaagg tagaaaacct gccaagtgcg gtggacgtgg aaaagctgaa
     4861 aaccttagtc actgatgtaa aaggcgatac caaagccacc tcaaagcagg tggatagtat
     4921 cagccaccaa ctcggcttgt tattagaagc aaaattaaag gaatgatatg tcgttaagag
     4981 atttactcac tcaagaccaa cggctggtga ttttacgctc attagcggaa gccggctatg
     5041 atgccaatga gtcaattatt agtgattgcc tagatttata cggtcacgat attagccgtg
     5101 atttagttcg cacccattta agttggcttg aagagcaagg cttacttacc ttagaacgtt
     5161 tgcgagatgg ctatatggtg gcaagcatta cccagcgtgg cttagatgtt gctcaagggc
     5221 gtgttgtggt aagtggcgtt aaacgccctc gccctaaaat ttaaacggta tttaaggagc
     5281 gtttaaatga gcgagaaaaa tactcgtggt cgagcatcaa aagtcgattt actgccgccg
     5341 aatattaaaa cccaactggc gatgatgttg cgtgataagc agtactctca gtcacaaatt
     5401 ttagaagaaa ttaatgactt aattcgggat tgtggcttgc ctgatgaaat gctgttaagc
     5461 aaaaccggat taaaccgcta cgcaagccgt atggaacgct taggggcaaa aatccgtaat
     5521 gcccgggaag ttgccgaaat ttggactaag caattcggcg aaatgccaca aaccgatatt
     5581 ggcaaaaccc taatggaaat ggtcaagcaa attgcctttg aaacctcatt gaaattaggc
     5641 gaacaagaag gcggtattga gccaaaacag cttgctttgc tctcgtctgc tattcaacgt
     5701 ttagaacaag ccgaaagttt gagttttaaa cgggaacagg caatccgtaa agaggtcgca
     5761 caacaagccg ctgaaaccgc tgaaaaagtg gtggtgcaag cgggtttatc cgctgaaacc
     5821 gtccgtacga ttaaagagca aattttagga attgcataat ggcactactc aataacagac
     5881 cgctgaatga attagcccct gaatgccgtt cgtttttaga gagcattcac gcttttaatc
     5941 ctaacgaact gttattgggc tatcaaaagc ggtggattgc ggacgacagc caactcaaaa
     6001 ttgccgaaaa aacccgccgt tgcggtttaa cgtgggcaga agcagcagat aacgccttaa
     6061 tcgcaagcac ccgcaaatca gacggtggct ctgatgtatt ttacattggc tcaaataaag
     6121 agatggcacg tgaatatatc gatgctgtcg caatgtgggc aaaagccttt aatcgtgtgg
     6181 ctggagaaat ccaagaagag atctttgaag acgaagataa agacatctta acctatgtaa
     6241 tctacttctc atcgggtttt aaggtcaagg cattatccag taatccgaaa aacctgcgtg
     6301 gtatgcaggg cgtggtggtg attgatgagg cggcattcca cgaatactta gcggaagtct
     6361 tgaaggcggc gttagctctc acaatgtggg gggcgaaagt ccgtattatt tcgacccaca
     6421 acggctcgga aaatctgttt aatgaactga ttaccgatag ccgtgccggc cgcaaacgct
     6481 actctgtgca tacgattacg attgaagatg cctgccgtga tgggctatat caacgtatct
     6541 gccaagtagt gacgaaaaaa acgtggtcac cggaagcaga aaaagagtgg attgaaaacc
     6601 tactcaacga caccgccagc gaagaagacg cattggaaga atacttctgc gtaccgaagt
     6661 tcggctcagg cttatggctc tctcgtgctt tgattgaacg gcagatgagc gaagccacgc
     6721 ctgttatccg ctttacggca aaagatggtt tcagccttgt ggctgaaccg acacgctatg
     6781 cggagattgc cgaatggtgt gaattagaac ttgagccgat attggcaacc cttaaccctg
     6841 atttgttgca ttttatgggc gaagactttg cacgcagcgg cgatatgacc tctctggtgg
     6901 tgcttgctca gcaacaaaac cttgttcgta aagtcgcctt tattgttgag cttggcaata
     6961 tgccctacaa gcaacaagag caaatcgtga tgtttatgct taaacgctta ccgcattttg
     7021 ccggtggggc ttttgacgcc cgaggcaatg gtggctattt agccgaagct gcacgagatg
     7081 aatttagcac cttgattgac tgcgtgcagt tatcggaaaa atggtatcgg gaacacaccg
     7141 ccccctttaa agcggcattg gaagacggcg agctggaagc tattccaaaa gatgcggata
     7201 ttttggctga tttgcgttca tttcaggtgg tgaaaggcgt accacgcata ccggataaac
     7261 gcactaaaag tgcagatggg aaaagcaaac gacacggtga taccgcaatt tctttgctgt
     7321 tggctcatta tgccagccga caattagtgc aaatgccagt tgagccggta tcacgccgtc
     7381 cacgccatag ccaacaatta acagaaggat attaacaaat gagatatgta ccactttgtt
     7441 taatgatgtg tgcctcattc tacctattta ttaacaacat tgacggctgg ggttggggaa
     7501 ttcttttatc ttttatttta gcgagtgcag cttatggcaa agaagaataa tttaattagt
     7561 gaaattgcca cccgtgccag aagtattgat tactgggcat ttggctatta tctgccgaac
     7621 cctgacccga ttttaaaacg aatggggaaa gatatttccg tttaccgtga gttgttatca
     7681 gacgggcaag ttcgctcagg cgtacgccgt cgaaaagcgg cgattaaagg cttagagtgg
     7741 cgaattacca ccactaacaa tgagaaagtg gacgagcaga tttatcaaat atttaaccgc
     7801 ttgccgatga ataacctgat taccgaaatg ctcaatgcag cactctatgg ctaccatatc
     7861 agcgaggtta tttgggcaaa agagggtgag ttatttgtgc caacagaaat cattggtaaa
     7921 aagcctgaat ggtttatgtt tgacgacgaa aacctactgc gtttccgtac caaagaaaac
     7981 tgggcggacg gcgaattatt accagatgat aagttcttgc ttactacgca agaagccacc
     8041 caagataatc cctacggttt aggcgattta tccctctgct tttgggcggc gacctttaaa
     8101 aaaggcggtt tcaaatactg gttggaattt accgaaaaat acggctcacc gtggttgatt
     8161 ggcaaacacc ctcgccaagc tcacaataca gataaagagc gactagctga tgccctagag
     8221 ggaatgatta gctcagcgat tgcggttatc cctgaagata gttcggtcga aatcaaagat
     8281 gcagcgggca aatctgccag caccgatgcc tttgaaaagt tcctcaattt ttgcaaggca
     8341 gagatcaata tcgccctact tgggcaaaac caaaccaccg agcaagaaag caaccgtgcc
     8401 agtgcacaag taggcttgga agttatggaa gatattcgct cggacgacca agcgatgatt
     8461 gaagccacct tcaacacctt gttgcagtgg attgtgaaat ataacttcaa tgtggaacaa
     8521 ctgccgaagt ttgaatttta cgagcaagaa gccatcaaca ccgaccaagt tgaacgagac
     8581 agtaaactcc acgcaatggg cgtgcgtttt tccaaagcct actttgagcg tgaatatggc
     8641 tttgaggcgg gtgatattga ggtgcaagcg gtcgaaaaag cggaaaaatc tgcaaatacc
     8701 acagaattta gcgaaggaca acgccgaacc caagtgccaa tgcctgtgcc aattttggaa
     8761 cagctagaac acgagggaga agcaatggtg gacgattggc tacaaggggt gagagataaa
     8821 ctcgctcaag cagatagtct ggaggatttc caaagtcagc tagatagcct tatccctgaa
     8881 ttaagctttg ccgaatatgg cgagctgttg gcgttaggct caacggtggc agagcttgca
     8941 ggcagacaat cggtaaacga tgaaattaag gcaaaacgca atgcgtaaat ttacctttaa
     9001 acagcaagcc caatattttg agaaaaaact caatctccgc acgaatagct accttgatat
     9061 tctgggcgaa gagcacgact attttttcgt ggtggctggg gcgaatcgta atgaagtgtt
     9121 gagtgagttt cgcaaggcgg tggatgaggc tattcacaac ggcgaaacct tagagaactt
     9181 tcgcaagcgg tttgatgagg ttgtggcaaa aacaggctgg gagtacaacg gcggacgaaa
     9241 ttggcgaaca cggattattt acgataccaa tgtttacggg gcgtataacc gtggacgttt
     9301 gcaacaacat ttagagcttg cggaggatat gccttattgg gaatatcaac acaacgacaa
     9361 cgcccaccct cgcccacagc acgtggcgtg ggacggcttg gtgctgcgtt atgacgatcc
     9421 gttttggaaa tatcactatc caataaaagc ctacggttgc cactgcaccg tgcaagcgtt
     9481 agatgatttt gacctcaagc acgatggtaa aaccgtcagc ccaccacctg aaattgagtt
     9541 tgaacaaaaa acggtaggcg tgcggacagg caattcacga gtcgtaactg tgccgaaagg
     9601 ggttgatgtg ggttttacac cgcataattt tgataatctc aaagccggga gagcagcaaa
     9661 tgtagataag ttgctaatgc aaaaaatggt taccgccgat cctatatttg cctccaaagc
     9721 agtcagtgat ttattggcaa aagagccggt tgcaaagtta cataaccaag cctttaaaaa
     9781 ttgggtaaat gatgttgcca atgctaaagg aagtgcatta tcccaagtag agaatatgca
     9841 gttgttaggg gtactacctg ttgcggtgat tgaacggtta cagcagatca atttagctcc
     9901 gcaatctgca attattgcaa taacaaaagg cgatatggta cacgctctac gagagctaaa
     9961 acaaaatacc ggtattgccg taccgttgga attttgggaa aagttgcctg caaagttaca
    10021 atacccaaat gccatcttgt tggaaaaaca acaagcagaa actacattgc tctttatcta
    10081 tgacgtagct caaaccaaaa ttgccgtaaa agtcaattat gatgcaactt tacaagatag
    10141 acacggagca aaaggacggc agaaagtctt actgaatcga gcggttacag gtagtttatt
    10201 ccaagataca actggattga aaagttcaaa gtatgaagtg ctattgggag aaatgtagcg
    10261 gcgaaggact cgaaccttat aatgtaggtt aaacctacaa cctttaccaa ttaggaaact
    10321 accgctacat tgtgtaaatt cactataccc ctaaattatt ttttaatcaa taggagaaac
    10381 aaaatggcag aaaaacaact ttcctttaaa gtagccgaaa tagtgccaat gtcagctatt
    10441 aacactatgc ggcacttaat tagtttggca ttacaagcga attatgagag agaaaaatct
    10501 cgtgcttgat aatttcaatg gcttgtagtt cgggaactat attatctgaa acaagccatt
    10561 gttttgttga tgtcagacat ttagcgatga aatccataat taaaccatta gcagtagctc
    10621 gttgttccgg agtaagttgt aaccacgacg cctctgtttg ttggtctaat gtataaagaa
    10681 acataacggc ttctttttct gataatgggt caagtggtaa tttttcagct tttgtgacta
    10741 accattgacg ggaaagcaat aaatcataaa ccagttctat tgcttgttct gcatttacca
    10801 tcatattcta attccttaat atatcagggc aacattaccc aatctatatt ttactgagat
    10861 ttgcttaatg atcaaaatca ccctcaacaa cacccaagcg gtcaaatcgt tacaacaaat
    10921 tgcaaatcag ctggaacaac ctcgccgact gtatggcatt ttaggggaaa ccctaaagaa
    10981 aattcacact gcacgcttta aagcggaaca agaccccgat ggcaacaatt ggaaaccgtt
    11041 agccagtagc acgcttgctt taaaacgtaa acgaggtaag tccactaaaa tcttacggca
    11101 agacggctac cttgccgata aaacggctta caatgttaca agtgataatg ttgagtttgg
    11161 ctcgcaggaa gtgtatgcac ggttgcatca attcggcggt aaagccggac gaggcaaaaa
    11221 agtgactgta ccggctcgcc cgtggttagg cgtaggcgat aaagatgagc agttactttt
    11281 acgcaaagct gagtggcatt tagggcaaat tatcggtcgt atgggaaaat aaccgcttaa
    11341 aatcaaattt aacgcataaa aacgcctctg tgcgttttta ttttttattc gcctgattat
    11401 tcgactcaaa aaatttaaac gctgttaaac gcatttaaac ggtatttaaa cggtattgcc
    11461 gattgtgata aatcctcttt attaaaacac cctcgaaaaa tctttaaacc agtttaaaag
    11521 ctaatttctc tccaaatcct tattattgcc ccatcacgga ggcaatatga cccaaattga
    11581 aatttttaaa gccggtaagc gttatgacgc caacggcacg ttaattgaca ttacccctga
    11641 aatgttgcaa cagaccgttg ctgcctataa ccccgaattt cacgaagctc cgctggtgat
    11701 cggacacccg aaatccaaca accctgcgtg ggggtgggta aaagcccttt cccttgaggg
    11761 cgatgtacta aaagcagaag tagatcagct agacgctgag ttttcagaaa tggtggcaag
    11821 cggcaaattc aaaaaagtct cggctgcttt ttacttacct gatagcccga ataacccaca
    11881 taaaggcgtg ttatcgctac gccacgtggg gtttttaggg gcaatgccac cggcggttaa
    11941 aggcttaaag caggtggaat ttgcagaaga tgatgatttt gtcgtctttt ctgaatgggg
    12001 ggttgcaagt ctatttagtc gttttcgtga ttggttggtg agtgagttcg ggcttgaaaa
    12061 agccgataaa gctcttcccc cacacgaaat tgattggctg aaagaagagg caatgcgaag
    12121 ccaaattagc aaacaggtac acgccgaaca ggcaacacct gaaccgattt ttaatgaacc
    12181 cgcacaacca gaaggagaac ctgaaatgag tgcagaagag aaggaagagc ttgaacgctt
    12241 aaaagcggaa aacgagcagt tgaaagccga aaaagcccaa gccgaagcag agaaaatgga
    12301 agcagagctg gaagctgaaa aagctggtaa tgcagagttt tgtgaaggtt tagtcaagca
    12361 aggcaaactt gccccggtgg caaaagcggc gtttgtgcag gctttaaata acctttcagt
    12421 attaaaagcc ggtcgtgagc cggaatttaa tgagggcgaa gatgtggttt cacagtttaa
    12481 gtctgcaatg tcgcaatcac cacagattat ccaatttgga gaatatgcca cagcagataa
    12541 agccaaccca caagaagcgg aagcagtgga atatgctgaa ggcacagatc cagtttcgat
    12601 tgaagccgac caaaaagtgc gagcttatat gaaagcccac aatgtaggct acgctgcggc
    12661 atttaatgcg atttatcgct aatgtttaac ccacaactga aaaggaatac taatgacaac
    12721 tcataactta caaaaactgc gtgtacaaga ccccgtttta accgagctgg cacaaggcta
    12781 tcacaataac gagctggttg ccgagacctt aatgccgact gtcgaaatcg aaaaggaagc
    12841 aggcaaaatc ccaactttcg ggcgtttagc tttccgattg ccttctaccg tgcgtaactt
    12901 gcgtggttca tctaaccgtt tagatccaga agatattggg gcgattgatg tggcgttaga
    12961 agaacacgat gtggaatatg ccattgatta tcgtgaagag aacgaagcca ttttttcttt
    13021 acgtcaattt gccttaaata ccacccaaga tgtgattgcg ttaggtcgtg aaaaagcggt
    13081 tgcaaccctc gccttagatg aaagccgtta tgaaacagac aataaagtca cgctgtccgg
    13141 caccagtcaa ttcagccata aagatgctga tgtgtttaag gtatttgata ccgctattcg
    13201 tgccgtgaag cgggctatcg gtcgtaaacc gaatgtgtgt gtgatttccg gtgatgtgtg
    13261 ggcagcgtta aaagaacatc cggcagtggt tgaaaagctc aaatacagtc aagtagcgat
    13321 tgttacccct gaggtgtttg ccaaactgat cggcattgag accgtaaaaa tcggtgaagc
    13381 ggtgtatgaa gaaagcggtc agctcaaaga tatttggagc aaagatattg tggtggcgta
    13441 tgttgctcct cgttcgaccg gaggcaaagg cacggtttac gagccgtctt atggttacac
    13501 ggttcgccgt caaaaaggct tatttgttga tacttataaa gagagtggcg gcaaaattga
    13561 agtggtacgc acgaccgata ttcacaaacc tcatttagtg ggtgcggcag caggctattt
    13621 aattaaagct gccgtataag ccacatacca tagggtgcgt ttactaacgc accattatct
    13681 caaacacatt acatagagga aaaaacgatg gctaaattta ttgttttaca taccccaatt
    13741 ttacacgatg gcaaacgcta tgaggtgggg gcagaaattg aactcaccgc tgaacaagct
    13801 gagaacaatg cgatcaactt aaaagcggta gaagctgttc caaaaccacc taaaaatgcc
    13861 tcaaaacctg aagatgagcc aaaacccgaa ggtgaaccta agcctgaaga tgcagtgacg
    13921 gaagatgatg tgaagctggc tgaagcaaaa attgcagaag cagagcaacc aaaagggaat
    13981 aaaaaataat gtatgtgcag attgatgagc tactcacggc gtttagtcgc aagattgtgg
    14041 tgcagctcag taatgatgaa ccgacagcga ccgagcctga tttaaagatg cttgaaacgg
    14101 cagttaaagt ggcaaatgag cgaattgatg cagcgttacg ctctcgctat accttgccgc
    14161 tggctgatgt gcctacgctt attaatcagc acgcattaac ccttgcccgt tattggcttt
    14221 atgcccgccg tcctgaaacc aaaatgccgg acaccgtgaa ggaaacctac caacaagcgg
    14281 tgaaagagtt ggaacagatt gcaacaggca aactgcattt aggcattgct gaaagcagtc
    14341 aaattttaga agacgatgtt ttagccgata acagtgaata tgaagttcgg gcgaacgctc
    14401 gcattgatac cagtcgttat taaagattat gtcagccaca caaccgattt tagaagatat
    14461 ttgccaacac ttgcggcaag cattgcccga gtgggaggtg gaactcttcc cgaatgaccc
    14521 aagcacctat catctctcgc acattaacgg tgcggtgttg attagctatt tggcaagcaa
    14581 atttgagaaa cctcgcacta cacaagcggt gctgcaggtt cgccacgttc agattgcttt
    14641 aacggtgctg acccgtgatt tgcataatga tgtcggggcg ttggatttgc tggataaatt
    14701 gcggttattg gttgtggggt ttaagcctca aaactgcggt gagtgttggt tgattgatga
    14761 attttttaat ggctcaagcg aagaaaccgg gctttggcaa tatcagttga ttttgcaaac
    14821 cgaaactcag caggtgcaac accaagcggt cgaaaatctg ccaaaatttg taaccgctca
    14881 tcttcgccgt caagaccagc ctggttcgcc cggacttaaa acttaaatcg tagggtgcgt
    14941 ttgctaacgc accatcaaca tcacctgatt ttacggtgcg ttggcaaacg caccctacaa
    15001 ggagaatatt atgacgtttc accacggttc tgaaaccgaa cgagtaaacg gtggctctgt
    15061 gccggtatcg gtggttgata gtgccattat cggcattgtc ggtactgccc caatcggcgc
    15121 agttaatgaa ttgaccgtct gtttaaccaa aaaagatttt gccaaattcg gcacgatttt
    15181 aaaccaaggc ttcaccttac ctgatgcctt tgatatttta gctcgttacg cagcgggtaa
    15241 agtgtatgtg gtgaatgtgc ttgacccttc ccgccaccgt actaccgtga ccgatgaagt
    15301 cctcacactg gatcgcaata cgctgaccgc tcaaacagcg aaaaccggca ttattgcggt
    15361 gacgagagtg aaagacggtg caaacgtgct gaatgctgat cggtattcgg tcgatctgca
    15421 aaccggcgtg gtgacctttg tctctgcacc gtctgccccg aaaattagct atatctatgc
    15481 tgacccgagc aaagtgaccg aagaggacat taaaggcggg gtggatagct taaccggtaa
    15541 acgcaaaggt tttgaactat tgcgtgatgg ttttaacctt tacggtgcgg atgccaaaat
    15601 cttaatctgt ccggaatttg ataaaaccgc aagctgtgcc gctgcccttg ccacccttgc
    15661 cgaccaactg cacgctaagg cgtatattca actgccgaaa gggacgagct tatcaaaagc
    15721 tattcaagga cgtggcccgg cagggacgat taacgcctcg gcaagcaatg agaacgtacg
    15781 ccatttcttc ccgtatgcgt tggggtcaag caatactctt gaaagccttg cgacccacgc
    15841 cgccggtttg cgtatgttga ttgatgtgga gaagggctac tggttcagca cttccaataa
    15901 agagctgaaa ggggtgatcg ggttggaaat tccgctgacg gctcgggtgg acgataagca
    15961 aagcgaaact aatctgctca atgcggtagg gattaccacc attttcaata gttttggcac
    16021 aggcttccgc ttatggggca accgttcgtc taacttcccg actgtgaccc atatcagcaa
    16081 ctttgaagtc gcctctcgca caggcgatat tattgatgaa agcattcgcc aagccgaatt
    16141 gcagtttatt gatttaccga ttgatgatgc gttgctggat agcttccttg aaaccatcga
    16201 cactttcctg cgtacgcaga aatcgttggt aggttattcg gtgagcttag actatgaata
    16261 tgacttggtt gatgcattca gccgtgggca agtcccgatt gtgtatgaat acactcctaa
    16321 aattccgggt gaacgtatca gcaataaatc tgtgatgacc cgtaaatact tggcaaactt
    16381 ggtgtcgcaa cgataagggg aaataaatga gtattgcaat taaccaaatt gtaaacggaa
    16441 atgtttacat taacggcaac agccaaatgg ggcgagtgaa tgaggtcaaa atccccgata
    16501 ttgagtttga atttatcgaa cacaaaggcc ttggaatgca cggtgtgatt aaattacctg
    16561 ccggcacgaa tgcgattgaa gcagaaatca cttgggacag tttttatccg gaagtgcgtg
    16621 cggtaatgct taatccgtat aaatacactc agttgcaaat ccgctctaac ctgcaagtgt
    16681 ttaactcgca gggcttggca gccgaagagc cgatggtcac cattatgaat gtgtctgccg
    16741 gtaaaatcgg cggcacaggg cataaaaaca aagaaaatgc cgaatttgcc gacacgttaa
    16801 atgtacattc aattaaacag accgttgccg gtcgtgagct gttatttatt gatgtgctgg
    16861 cgaatatcta ccgtgtgaac ggggtggatg tgttgcaaaa attccgcacc aatatcggtt
    16921 agtaaaatct ttaaagccgt ttaaaatcaa tttaaacacc gtttaagtaa actcctttgt
    16981 gaagttaaac aacaaccact cacaaaggag tttttttatg gctaacgcag ctcaacaagt
    17041 attaaccaat cttcgtgtac aaaccactta taaattgcaa taccctatcg ctttaccaga
    17101 tggtagagtt attgaaacct tagatgtacg tcgtccaaaa ggtaaagatt ttcgtttgct
    17161 tgatgaaaaa gggtttgacc ctgaaaaaga tggcgtaaaa attctacgct tctatattca
    17221 acagctcacc acacttgtgc cggaagatat tgatgaactc gatgctgccg atattaaggg
    17281 cttaaataac ctattggaag atatgcttat tgagggaaag tccgacaaat aagtgaacta
    17341 gataccgttt atgctgatct cgcttggtgg tttaagtttt caccaagcga gcttttagaa
    17401 ttggatttag tggatattcc gaaatgggta gaacagatga acaggcaaat aaaagccggt
    17461 tatgggcaga ttttacggta gagccaaata aagggttcgg tggctaaagt aagtaaaatg
    17521 gcgacgcccc aagctagata cacaccaacc cacgccaaga ttgtcaaaat caatccataa
    17581 atgagtacaa aactaacgcc ctcgcttagg ctttgtatag attgaatcgc atctaaccag
    17641 tagaagatac tccaaccgac taatgctacc gctaacaacc atttagcggt gcattctgtt
    17701 cttgttacac aagcctcgaa accagcccac tcagtaattc gattatttaa tttagtcagc
    17761 atacaccacc tccttaaact ttccctattt tacgctaagg atttaaccaa tggcaaataa
    17821 tttagctatc ggaatggtaa ttggtgcaag cctatcatca ggttttcacg gtgctttttc
    17881 aggagcaaag aaaaagctag aacaattaga acaggctgtc gctaaaaatc agcaaagcca
    17941 ttctaaatta ggttctgagc ttactgcatt gcgtagtaaa caagctactc tctatgcaga
    18001 aatgagccga gccagtagta aaggtggtgc tgggcttgct cttatgcaac aggaatataa
    18061 aaaaattggc aaagaaattg ccaatattag ccgagagcaa cgcaaatgga gtacagaatt
    18121 agaaaaatct attgctaagc aaactaaatt acgcaatgca atggaacgtc atacacaagc
    18181 taaagaaaac cgagacgagc ttaaagggaa aataattgga acggtagctt ctgcggcaat
    18241 gggtgtcggc gtgatgaaaa cctatatgga gcaagaagaa gctgcgaata atcttaaaat
    18301 ttcaatgctg aaagcagatg gttctttcgg gaaatttgaa gagattggca agattgctga
    18361 cacattaggg acagatttac cgggaacaaa aaaagatttc tacaagctcg caatggcatt
    18421 aaagaaacaa ggtgtttctg atgatgtgct gaccggaggg gcattaaaaa cttctgccga
    18481 actgaatgtc ttgcttgata tggatcagga aagtggtgga gagtttttag cgaagtttat
    18541 ggaatctcac cggctcaatg aaaatgagtt accacaagca gccgattatc tgcaacgagc
    18601 aatgtttgcc ggcggtttaa gtaaagagca gatgtatgaa tcgatgaaat actatgctcc
    18661 aaaactgaac tcaatgaaac ttacaggggc tgagaatacc gaaaaagtgc tggcgattga
    18721 agcaatggca ggtcagcaag gcttagaggg ttcaaccttt ggtacgggct taaatatgat
    18781 gttaagccgt atgaataaag gaccggaaat gctcaaggca gcagccaaag gaatgaaagc
    18841 cgaagctcga gagatgatgg aggctgtcgg agtagaattt aatttctggg ataaaaacgg
    18901 ctcattcaaa ggcattgatg gaatgctggc tgaaatgacg aaatttgaaa aaatccgcaa
    18961 aaaattcggt gacaaaggtg taggtttagt tgcagaagag ctgtttggca ttgaaggtgg
    19021 gcgtcttgct gatattttgg ctatgaaagg tcaaaaaggc ttagatgaaa tgctgagtaa
    19081 aatgcgtgaa caagccagcc ttcaagatcg cattaacctt aaaacaaata cattaggtgc
    19141 tgccctagaa tctttaggag gagcgtggga aacctttgtg ggggatattg gctctgtctt
    19201 tgccgaagat ataaaagggt tttcaaaagg cttgcaatct gcggtggaat ggcttgtgcc
    19261 atttgtatca aaacataaag aggcgattaa atttgtaggt ggtttggttg ctggacttgt
    19321 tattttacga ggcgttttac aagctggttc ttttgttatt caaacggtaa ctatggcaat
    19381 gaacgccctc aaaattgcag caatgaccaa tcctattgtc ttagtcattg gagcaatcgc
    19441 agcgggtgct tacttgattt atagccattg ggatagcatt gccccttggt ttgcaaatct
    19501 ttggcaaaat gtgaccgctt acttcaatca attttggact tgggtaaaag gtgtttggtc
    19561 gggcgtgacg gactgggtgt cttctgtgtg gaatggtgta gccacttttt tcgggcagtt
    19621 atggactacg attactagct tatttagtgt agcttggaca aatatccaaa caatatgggg
    19681 aggagcaaca gcttggttct ctggtttatg ggatgggatt aagtctgcgg cttttggtat
    19741 gttcgacagt attagccaaa aagtcagctc tgttgtagca agcattaaga gctttttagg
    19801 ctttggcgat gatgtggata aaatgggggc aaaaattggc aatgtagcta cccaagtcat
    19861 cagcaaagaa cactcaggac aactcagcaa aaccgcagat atggcagcca atacagggtt
    19921 ctctagcggt ggtttcaccg ggcaaggcgg taaatatacc cctgccggta ttgtgcataa
    19981 gggcgaatat gtgatgacga aagaagcgac ctctcgtttg ggtgttggaa tgctggatag
    20041 cttaaactat ggcggtgcta tgggtttcac tcaacctgtt ttgcaaccga ttttaggtaa
    20101 gcaaaaaggc ttttttggct cactttggga cgatgtgaaa ttcggggcaa actttgtcgg
    20161 caatctgctt ggcttaaatc aaggcagcct gaaaacgcct gattttaacc caaatgcgac
    20221 caatgcaagc ggtcaaaatt cgtcgatttt tagcaattat gaaccactca accgaaatgc
    20281 ggtaacacag caggaaagct cgcaagcacc gcagatagtc gtgaacttta acccgacaat
    20341 caatgtaaac ggtaatgcta cgcaagaggc tcaatcgcaa attatgcagc agttgcaaat
    20401 gagtgcttat gagtttgaga aattgctcaa tcgtgtgcta gaccaacgaa gccgtagagc
    20461 ctattaggag tgatttatgt attttatgtt aggcaatatt gcctttgagc cggtgaattt
    20521 aactgaattt agcgagcaac ataccgccga atttgccgaa cacgctgtgc taaaaggcaa
    20581 acctcgttta caagcgatgg gcgaaaagct aaatgaactt aatttttctc ttcggttgca
    20641 ccataccata ggcggtgtag agagccgtta tcaagccttg cttgaagcca aagcgaagca
    20701 agcggcattg gcgttaattt ggggcagtcg ttataaggga gattatgtaa ttgtcgatat
    20761 ttcatcgacc acattgttca ccgatggcag aggcaatgcc ctcgctcgtg aaatgcaaat
    20821 cagcctgaaa gagtttgtgg gcgataatga cggtggtgtg ttgggtgagg cgttaaattt
    20881 tggtggtggc tcactgcttg gctctatttt gccaagcggt gcggtaacta ccctatctca
    20941 aatcaaaaca gcagtcagcc gaggtgtgga gctttataac agcggcaaac gcttagttga
    21001 cgaagtgcaa aataccgtgg cgattattcg gcagttgaaa aatgacccgg caactgcatt
    21061 ggcatattta cccgctgcat tagcgaattt agacggggca ttggggcatt ttggtaattt
    21121 gaccggctca tcggcgacct tgggcggttt gcaggagaaa ctaccggcag cagtggtctt
    21181 tagcgaggaa atcggcgaga tttatcagag tttgcaaaca atgcgaagca gtttgggtaa
    21241 tgcctcggca aatagctggg ataattggtt tacaccggca gagagtgcat tgacagaggt
    21301 cacagacagc tttgaccatc tagcaaaacc ggtggcaaaa atgaccgctt ggattgtgct
    21361 gcgtaccgat gaggaggcag aaaatgacac agttgcttaa acatatcgtc aaacagggtg
    21421 agcgttggga taacttgagc tatcaatact acggcaatgc gtttgaatat ggtcgaatta
    21481 ttgatgccaa tccgcatatc ggtttttgcg aggtgttgcc gataggggta acaatttata
    21541 tccctgtact taacgttaag ccaacgaata atgaaaatat gccaccgtgg ctaagggggc
    21601 gtgatgcgta atgtaccgaa gcccgatttt tcactgtttt atgaaaaaac caatatcact
    21661 gccgagattg agccacattt ggtgcaactg acctatatcg accatttgga aggtcaatcg
    21721 gacgaactca ctgtggaatt tgaagacatt caaggcaaat ggatacgcca atggttcccg
    21781 actcaggggg ataagctcaa agcggcgatt ggctatcagg gcgaatttct gacggacatc
    21841 ggtgagtttg aaattgatga agtggaatat agttataagc cttccactat taacttaaaa
    21901 gctctaagca ccggtatcag caaagccaac cgtactttaa aaccgaaagc ctatgagaat
    21961 acgactcttg ctcaggtggt ggcaaaggta gcagataacc tgaaattaaa ggtagtcggt
    22021 aagattaagg ctatcccgat taaacggatc acccaatatc aagagcggga cgtggagttt
    22081 ttggcacgcc ttgcccgaga gtatcatcac agctttaaaa tcgtgggcaa tcagctggtc
    22141 tttaccgata aaagcgaact ggggcaaagt gagccggtgt taatgttgga agaacgggat
    22201 actatttccc tacgtttgcg agatcggatt aaagacactg caaaggcagt ggaaatcagc
    22261 ggctatgata caagcggtaa aaaagtggtg aaaaaacgca aaaaggcaaa agccttacgc
    22321 ccgaatataa aacaagctaa atcagccagt gaagatacgc tgaaaatcat cacacgaggc
    22381 gaaagtcaag aacagattga tgcacggggt gaggctgcgt tggctacgca aaatgaagat
    22441 caggcggctg gtgatattga gcttatcggc aatcctaaat tggttgccgg agcaacgatt
    22501 ttattgcgta actttggcgt gtttagtggc aagtatctga ttaaatcatc acgccatacg
    22561 attagccgta gcggtggtta tactactcat attgaggtca gaatgttgga gtttattgcc
    22621 gatgatttaa tcacattagg tatggaggct ggcaatgcaa acgcataatt ttggggcgac
    22681 ttatcaagaa gggattgtat ccgctgttga tccgaaaacg cacaaagtgc ggtgtaaaat
    22741 ccctgcgctg gaagatttag aaactgcttg gctgtcgttt ttgaccccga acgccggtgg
    22801 caatcagttt tactgtttgc ccgatgtggg cgagctggtg gcaatgctac ttgatgcaca
    22861 aggcgaaggt ggctgtgtgt ttggggcaat ttataacgag caagacccga caccggttgc
    22921 cgatagcgat atgtgggtta agaaattcag caatggcacg gagatttcgc ataatcgcaa
    22981 aaccggcgat gtggtagtga agactaacgg gcatttaacc gcaacggctc aaggtggggc
    23041 tacgattaat gcaaacaccg tagtcaatgg cacattgcac gctaccggta aaatcacctc
    23101 tgacgaagaa gtctctgctc ctgttgtgaa acaaggcacg gtagagcttg gcacacataa
    23161 acacggcggt agccctgaac ctaataagta attctttaaa ccagtttaaa atccctttta
    23221 aagatagccc tgtatcatca gggctatgaa cagacaaact tccattcaat taacccactg
    23281 gcaacttgca ccctcaaccg atacagttga ggtggtgcaa ggtattgatg atattcatct
    23341 ttgtattgtc aatatccttt caacccaaaa aggcacggat attttacgcc ctgaatttgg
    23401 ctctgaccac tttcgctaca ttgactaccc tgaagatgtg gctatcccga attttgtacg
    23461 ggaaattaca accgccttgc aaaaatggga aaaacgcatt gaggttgaag aagtattggt
    23521 ggacggttca gctccgcatt ttatttttac tgtgatgtgg cacttaaccg atgatgttta
    23581 tcgtgaaatt taccgaacaa cggtataagg ataggcaatg acagaagcga ttaaaatcat
    23641 tgatgacgat gtaaaaaccg tacttgccga agcgattgcc gattatgaaa aacgcaccgg
    23701 taaaatctta caacctgcac atattgagcg ttccattatt caaacctacg cttaccgtga
    23761 gcagttatta cgcaaaggca ttaatcacgc ctttttacaa acctttccgc agtttgcgac
    23821 ggggattgcg ttggatttgt gcggggaaac ttttggttgt tatcggctta gagataaacc
    23881 tgcccgtact ttactacgct tttcagtaag tggtgaacat acagctatag ttatccctaa
    23941 aggaacgcag gtggcaatta atgacgagct atacttttca acgctcaatg acgatgttat
    24001 tactccatta attacctatg tggaaattga tgcagagtgt aatcaggttg gtgttatcgg
    24061 taatggttgg gaatcaggaa gagtcagtaa actaaaaaca gcactggcaa ctaattataa
    24121 agtaacagtt gaaaacattg atattacgag cggtgggttg atgcaggaag aagatgaacc
    24181 ttaccgtaag cgaattttag ccgcaccgga agcctttagt aactgtggct ctatcgctgc
    24241 atatgattac cacgtccgct ctgtatccca agatattgca gatgtgaata tctctacgcc
    24301 taggggtggc ttggtaagaa ttgcggtatt gacccaaaaa gggttaccgg atacccgatt
    24361 acttgatgat attaaaaaac acgttagtgc cgaacggcta cgcccacttt gcgatatggt
    24421 cgaggttatt aagcccacag aacgccgtta tcaaattacg gcacgtttaa tattgttaga
    24481 tggctaccgt gaggatttgg taaaagcaaa agcccgagag gcattacaac tctatttgtc
    24541 agacaagact aaaaaactcg gtttagacat tgtgccgtcg gccatcattt cagctttaag
    24601 agttgagggt gtttacgatg tgaatttaat tcagccagtc aaaactatta tcaacgaaac
    24661 agaatgggcg aactgcacag caatcagcgt agaagtcgaa gaggagcgta gagatggcta
    24721 gcttgcacta tgcggacatt attgtgcgag accctaaata taaagcatta gcggatttaa
    24781 gcaagcggtt aaatttgctc gatacttcgc aaattatgac tacgctggtg gatttattgg
    24841 gcgacgaatg tatcccattg ctggcagaaa aatggtcggt aaccggctat gacggcttat
    24901 tggttgcaga tagcgaaaac tcaaagcgag ccttaattaa aagagcaatc gaactacatc
    24961 aactaaaagg cacgccttgg tcaattcgtg aagtattacg cagactaggt ttcggagagg
    25021 ttgagattga cgagggactg aaaaatcggc tgtatgaaag cacttatgtg agcggaatcc
    25081 ccgaaaacga acgctgggcg cactatgcga ttaggttgag taacccgatt accaatgagc
    25141 aagctcgcaa tatccgtaag gtcttacgca attttgctcc ggctcgttgc tctcttgcag
    25201 ttttggatta taaagcagat ccaattcgat ataacaataa agcaacctac aacggcacat
    25261 ataaccacgg ttcaagttaa ggataaatta tggcaggtgt acaagaaacc gcacagtggg
    25321 aaaaccacgt ttacagaatt gaagaaaatg acccagtcca cggaggagaa aacggtgtaa
    25381 ccaataagcc aattaagcac ctagcaaacc gcacgctcta tctgcgtaga ttgctcaccg
    25441 aggcaggaca acgcattaac ccgaaaaaaa tcacagctac cagcaaaaat agtaatgatt
    25501 taactgggca tactcacgag attgaccacg caagcctaac gcaaaaaggc attgtgcagt
    25561 taaatgcgag tatccaatca actagcacaa ctgagtctgc aaccccttca gcagttaaag
    25621 cagcctatga taaagcagca acagcagaac aaaaagcgac attggcaaat gagaaagtcg
    25681 aggcgattaa agtaggcgga cgaaacctcc tcattcaatc caacactcca cacaacggga
    25741 atgcgtactc agtcagatac gcattggctg aggctccgaa agtaggcgaa gagattgtag
    25801 tcactctatg gggtgaactc ggctctcaac gtactggaat tggcgtttac aactctcaag
    25861 gtgctacgga gttggcaaaa ctggtcaaaa ttcgtgatgg agtttatcaa ggtaaaggca
    25921 tttggcgtaa gccgatgagt gagggacgag agcgaacgcc taacgacacg cacctgaatg
    25981 tgtattttta cccgaaaacc gcaacagata ataaccgtat tgagcgaatc cagcttgagc
    26041 gaggctcaat cggtacagat tggacgccaa acgaggcaga cttaaaggca gagattagtg
    26101 caatccgcac taaactaatc cctgtacggg gtggcaatgt tgctacaacc ttaaatgcgg
    26161 ctaagcggtc ggattggttt agagaaatgc aaatccctta tcaaagtggt tgggggtatt
    26221 acacccaagc atttcataac tcagggacgc aacacaacta cagcaattta ccgctgacag
    26281 gtcgttatta ttttatcgcc gaactctatc ataactctgg ttattctcac ttgcgtatca
    26341 cctatccaag tttaaaacgc acctttgaga gtgctatcaa ccttaacaat gaggatttga
    26401 ttctagattg gcgtgaggtg gtgtttttaa aagatggatt gtatcaaggc acttttaaaa
    26461 caacaggcac actagagtct gcttatcgtc taagagcggc tcgtgatgat gaacgttatc
    26521 agccatacct gcaaatggtc gatatgggct atgaccttgc caatcccccg gtaggaaaaa
    26581 acaaaattat tggcagtgtt gattattacg ttaaaaacgg cacaagcgag tcttccaaag
    26641 cgacgatgat ggcagcggca atgcctgaca agaacgtatt ttgggaagta gcattgtgga
    26701 atgcagcaca gcaacggaat gtattgttta aggggtatag caagactaac aatttgagta
    26761 ttggtaaaac caccgacaat gagcgagacc gagtacaagt caatggcaca atccaagcca
    26821 ccgcaccggc tgataacgcc aataacgacc aagtgccgac tacggcttgg gtgcgtaaga
    26881 tggcaaagat tttagctgat ggcaaggtga gtaaagccgg tgacacaatg actgggcatt
    26941 tattcatcaa gaatggggaa tactctgcgg tacataccta taacacaagt ggttggttcg
    27001 caaaatggga ggcggcccca ttatctgatt cgcactttgc tgccattgta tatgccaacg
    27061 acagagagac agttatcaat cgggtgttaa ttcccaagaa gaatggcaca gtcgctttaa
    27121 ttaatgatat tgccgatacc gttagagccg ctgtgagtcg tagtgataaa tcccgtagta
    27181 gaacttttcc tctgcaaacg gggaaaaaat atacaaccac agggagcgtt acgatttatc
    27241 cagatggccg aattgtgcag attttccact taaaaaatat taaagcggcg tggtttgatt
    27301 atgaggcaag tgcggtagga gataggcata gagttgtcaa tatccctctt tggactgcga
    27361 tgccaaataa aatttttgat gtcgatgtta aaactgttcg cccctcaaat aatgcctcaa
    27421 cttactacat agaagcggct gaatggctga gtgcgtggca gatttacggt aatgacacga
    27481 acaaatcaag tgtcaatatt aatctatctc gattcagagg tggaaaggat gaagatatgg
    27541 acttgtatgt aacagttgag ggatattaaa tggcatattt tgtgaatgtg attgatgagc
    27601 aaggcaatta tgagctaatt gatgatgagt ttattgggct gtatccggat ttggatttta
    27661 acacattacc caaactcacg gataagcaat atcagaccta ccttgccaaa gcaaacggca
    27721 aagagcgatt tgtaaatggc gaatttgtgt atgagcaaat taaggtggat atgcaagcgg
    27781 tcatttccgc tgaaaaatct gcaaagttag cagagattaa ccaaaaagca caagccttta
    27841 tcaatgattt agccaaatac aacgaaacgc ctaagtttga gcgtgatact tggcttgagc
    27901 aagcgaaaga ggcaaaagcg tgggtggctg acccaaccgt acaaacgcca acccttgagt
    27961 taattgcgca aatgcgaggc ataccgctcg acacgctacg ccaaaaagcc tacgaaaaag
    28021 cgatggcgta tcaaacggtg gctgctattg tagcagggca acggcaagga tacgaagacc
    28081 gcctagaaca agcggaaacc ttagagcaaa tacaggcgat tgagccgatg tatcaattac
    28141 cgcaaggagc aaacaatgag caaactgact aaattaaaat cgtggagcta ccacgtctta
    28201 attgcaatag atcaactctt taacgctctc accggtggag cagcggacga aacattttct
    28261 agccgttgct accgtggtgc agtgcttgcg gaaaatccga aaaaacgttg gcgtttttgg
    28321 cactcttttt tgaattgctt atttttagac ccaaagcact gctacgccgc ttataaagcg
    28381 gaggtacacc gcaagcagta tccgaaggca tttagacttg gggggattta atgaaaaagc
    28441 aaaacttaaa attagtgcgg ggcgatgatg tgagttttag attcagcatt aaagacagca
    28501 ccggacaacc tcttgcgtta aaggatttgt ggtttgattt gcacttagtc agctatcaag
    28561 gtgaggtgct gattgctctc tctactgatg atggcagtat tgagacagca gaggctggtc
    28621 agatggtgtt acattttagt caccagcaaa ctgctcgagc tgaatggaca agtgccaatt
    28681 atgacttgca actcacgcac gactatacaa gagtctagga ggtggagatg acctctatca
    28741 ttgaactaga cctgactgat gacctcatca ttgaggtgca gttagatagc acaatcatta
    28801 ccggcgatag ctttttagcc aacctgccgg atttactcca aatttacaac caagcaaagt
    28861 cagatagcag taaggagctt aacaatgact aaacacaaaa accacgaaaa ccacccgatt
    28921 gctataacat tctaccaact tggcaaagat gtcggcgaca ttaaccgccg gctagcggtt
    28981 attgagcaac gtgagcaatc agcacagcca agccaaccac aagctgaggc ggttacaatg
    29041 ccacagcaag atgctgttgc cattaataac atcaatgccg ttttggaggc ggtcgaaaaa
    29101 tacaaaactt ttgaaaaata caacactcag tggcaagagc gttttgaaaa attcctgtct
    29161 cgtaacccga atgattacga gttaagtgaa gagcaacgcc aaaaacttta ccacacgatg
    29221 tgccagcatt tgtggcaggt gaactttact gaaatcaata gtaaacagta tgaattaccg
    29281 atcccgcaac aattccaggg taagtttggc tatattgtca aaacctcggg cggtagcaca
    29341 gaaattagtt ttgagttgct atctgaaact cacagcactt atctttatcc ggatagctat
    29401 attcccgagg gcggtggcga tgtaatgctc aagccggctt atatttattt agtgattccg
    29461 gacttagtgg caatgcgtga gccggaggtg gtgggggttt caccgctgaa actgaacatt
    29521 ctgcagaaac acctgctgac acctcagaaa ctacaggagc agaagccctt gaacacgaag
    29581 gcaaactgat tgatggcgta tggcattttg agcgagagcc ggtaaatcca ccgagagatc
    29641 agaattatta tgtggcaggt aacctgttct acaacggcat accggattga taaattgatg
    29701 tttcagtaaa cctaattagg ggggaatccc ccttttttat tattataagg aaagaaaatg
    29761 aataaatctt tagtagcgtt agctgttgca gcgatggcat cgaaagcaca aactaaacag
    29821 caagcaagca agcaagcaag caagcaagca agcaagcaag caagcattgt gagatagaga
    29881 aagtatttaa acaagctcct ttaccctttt cagggcaaaa acggatgttt ttatcccatt
    29941 tcaaacaggt gttaaatgca aatattgaag cagacgggaa agattggact attatagatg
    30001 tttttggtgg gagtgggttg cttgcacata ccgcaaagcg tgagaaaccg ttagcaagag
    30061 tgatttataa tgattttgat aattacgccg aacggctaaa ccatatcaaa gagacaaatc
    30121 aacttcgcca agaaatctac caaattgttg atgaaattat accaaaaaat aagagaatta
    30181 gcaatgaaat taaagctaaa atcatcaata aaatcaatga ttttgagggg tttaaagacc
    30241 tcaaatgctt aagttcttgg ttattgttta gcggtgagca agttgcaact ttagatgagt
    30301 tatttaagca cgatttttgg cactgtgtgc ggcaaagtga ctatcctgaa gcaacgggtt
    30361 atcttgatga tattgaggtg gttagtgagt cctttcatca attattgccg agatttcacg
    30421 acaaagagaa agtattattg attcttgacc caccttatct ttgcacaaga caggaaagct
    30481 ataagcagga aaattacttt gatttaattg atttcttacg gttgatagac cttactaaac
    30541 caccttatat cttctttagc tcaaccaaaa gcgagtttat tcgctttatt cactatatgg
    30601 ttcaaaacag aaaagaaaac tggcaagcgt ttgagggagc ggaaagaata gtggttaatg
    30661 cctcggcaag ttataacggc aaatatgagg ataatatggt gtataagttc taaaaattta
    30721 aacgcccttt gatagtgatt taaagggcgt taaaaaacca ttaaaattaa gaaagtaaag
    30781 ctcctgtttt ctttcgtagt tttcgtggtt gcgtttcgca gttttgttgg ctcgctacaa
    30841 ttactgttca ttgtaatgtt taatcgacca ttggttttgc taggatcagt ttcaccaaaa
    30901 taaccgttaa aaccttggac ggtgccttct gctgctttga ttttttcagc aagtatttgt
    30961 tgctttgcag cactttcatc tgttaccttg agtacttcaa agtattcgtt ttcacgaatg
    31021 agaccagtag caaagtctaa atcgatgaaa actttacgcg cattaaaaat agctgtgatc
    31081 tctgcaacgc ttaaaggttt tttcaaacgg ataaaattag ttggcaagtg tggaaaacgt
    31141 tgatatgtga aaatatcttt gtccaaatga cgagaaacct gatctggact agtaattgct
    31201 tgaactttca cttggtcaat tgttggacta actatgccgg ttagtgtaat gtttgctgtt
    31261 tgggctgtat tatgattgac aaccatcgct ccttcatcgc tattctgaat acggcggaac
    31321 gtgagatcat tgccgttgac atctaagcgc ccaccacgat aaccaaaata gatattgtta
    31381 ggatccattt gatctgatga attgaggatt acggtaggtc tgccactcac aatacctagc
    31441 tctgaaaatg cagatttttt gttattttca tccgcttgtt gatttaatat aacagtgccg
    31501 tcaccaacgc taacggagcc tttgttttct cctttgccgt tgatagttag tgtcccttgt
    31561 ccgatttttg ataatctgtc accagcaggg ttactgattt tccagatcac atttttatct
    31621 ttatcaatat caacaccggc tcctaaccaa gtaatgcctg ctttcatacc ttccacagtg
    31681 gtattaccat gaaaatggat tgctcctgca ccttggttga tattctctgt gagacttagc
    31741 gtattgtttt cacccaaaat atggaatgtt ttaccgtgtt ggagttgagg attccaaggg
    31801 ttatcgcctg tattaccatt atgaccttga agtgttggta atgaagtatc tgctaaatta
    31861 actgtaagag gagcattccc tcctacgatt gagctggtat tgccagaagg tgtccaagtg
    31921 agtctagcac catttgcatt aatagcgcct gcattatttt ctttttctaa agcacgtaca
    31981 taatgtgggt ggtgatagtt ccagtaagat ttataaacat ctcccccaag cgtattattc
    32041 tctgagaaat agtcactata tacacctaac acaacccatt ttttggtacg aacatcataa
    32101 ccaaaaagag cggagccact atcgccaggt aaaccgagag ttgttaaggg accgtagccg
    32161 tggtctttaa atacatcgtt tatggtatta ttttcagttt ttgctactaa aatacggctg
    32221 ttaaaatcgc tgcctggaac gcttggatcg ccattagtaa caggcagaac gctacctcct
    32281 gtcaaaaaag gaccgttacc gacttcaata cgcccgttgt ttaagcgatc tctttcgttg
    32341 ttaaccactg cttgtctacc agaaccggca cgaataaaca tggggaaaat aaaagggtcg
    32401 ctaaatacac tataaaaatc ttgtacattt tcggtagtgc gttcaatctc attagctgga
    32461 gcgacttcag ttactaattt cgataaccta ggtgcgtggt agtcccagcg gggcgttggg
    32521 ttacctgaac catctaaaat cagtttttct ccttcgtcat tacgttcacg tttttctatg
    32581 cctttcccga gatctgttct ttctttattt ggatcaggca tatagttatt acggcgcacc
    32641 acactataat tgtaatgatg gtcgtcggct ttttcgctag atgaatcacc aaattgaatg
    32701 tcccgatagc cttggttgtg gtttacacta ataacgtatt gtggattaac taatgttgca
    32761 atccctgttt gacgagtaat ggaagagaag tcaatcattg gaatagacat agtctcacct
    32821 gttactgttt caaaaacagg tagatcatta gagtcttcat cacctccacc atagagaaat
    32881 tcataacaac cgggtaaact ttcattatca aagcattcag ataggcttac attcggctta
    32941 ggtgaaatat ttgattccac ttcaacctgc ttagttggtg taacctgtaa aaaagtaccg
    33001 atgtttttgc ccgttttatc aataactgga atattggttg ccccaacaaa aaatttgcct
    33061 ttattttctg ctaaatcacg aaaatattga taatcgacat caccacgtac aatagatgcc
    33121 agtaatgttg gtgaaagaga aatagcaatt gatgttgcta gaagagagag cttgaaagta
    33181 tgcttcatta ttatttgaaa cctgtataaa tatgtaagta gatcagattt gagcgctatt
    33241 aaaaagatta tttaaatcga ttaaatattc atttaaatac cacacaatta ttcagcgcga
    33301 ttatcttgtt cggcataaat ctgctcaata cccaaataag gtaataatta aaataatagg
    33361 ggatatttag tagtaacata gagaagagaa aagagtcttt attatgttat ttagagaata
    33421 attttgcgat tattactttt gcaaagtttt tcactttttc gaccgcttgt taaataaaaa
    33481 gggcgaaaaa tgtttcgccc ctaccgatta ctcttgtgga attgtacgga ttgctaactc
    33541 ttccaacgct ttcggattcg catagcttgg tgcttctgtc attaaacacg ctgcagcggt
    33601 ggttttcggg aaagcgatga catcacgaat gttatcagtt cctgtaatca acatcgttaa
    33661 gcggtctaaa ccgaaggcta agcctgcgtg tggcggagta ccgaatttta acgcatctaa
    33721 taagaaaccg aatttctctt tttgctcttc ttcgttaatg cctaaaatgc tgaacacggt
    33781 ttgttgcatc tgctggctga aaatacgtac cgagccaccg cccacttcgt agccgttaat
    33841 taccatatcg taagcgtttg ccaccgcatt ttccggatct tgcactaatt cttccggcga
    33901 taattctttc ggtgaagtga acgggtggtg cattgccgat aagttgcctt catcatcacg
    33961 ttcaaacatt gggaaatcaa tcacccataa cggtttccac gctgtggtat cggttaagcc
    34021 taaatcgttc cccactttta agcgtaacgc accgatggcg ttagtcgcaa cgtgccagtt
    34081 atccgcaccg aagaatacaa tgtcgtcttt ttgcaagttt aagcgtttaa ctaaggcttt
    34141 tagcacttct tcatttaaga attttgcaac cgggctttga atgccttcta aacctgtgtt
    34201 catatcattc acttttaacc aagccaagcc ttttgcccca taaatgccga caaattgggt
    34261 gtagtcatca atatttttac gggttagagc tgcaccgttt ggcacacgaa gtgccactac
    34321 acgccctttc ggatcattcg ccggaccgct aaatactttg aaatcaaccg attttaaaat
    34381 atctgccaca tcaaccattt ccagtgggtt acgcaaatcc ggtttgtctg aaccgaaacg
    34441 ggtcattgct tcattccacg tcatcattgg gaatttaccg agatcaacgc ctaaggtctc
    34501 tttccataag ccgtggatca tcgcttccat taatgcacgc acttcttcgg cagtcataaa
    34561 gctggtttcc acgtctattt gggtaaattc cggctggcgg tcggcacgca aatcttcatc
    34621 acggaaacat ttcacgattt ggtaataacg gtcgaagccc gacatcatta gcaactgttt
    34681 aaatagctga ggtgattgtg gcagagcata gaatttgcct ttatgcacac ggcttggcac
    34741 gaggtaatct ctcgcacctt caggagtagc tttggtcagc atcggggttt caatgtctaa
    34801 gaaaccgtta tcgtccataa aacggcggac aaaactggtg attttagcac gggttttgag
    34861 cttttctgcc atttcagggc ggcgtaaatc caaatagcgg tattttaaac gctgttcttc
    34921 ggtattgttt tgattgaagt ctaacggcaa tacttcagcg ttgttataca ccactaaatt
    34981 ttttactaac acttcaattt caccggttgc catctcttta ttgatttgcg attcatcacg
    35041 ggcaatcact tcaccttgaa tttgcacgca cgcctcagaa cgtaaggccg atgcttgctt
    35101 gaaaagtgct tcatctttct catcgaaaaa cacctgcaca atgccttcac gatcacgaat
    35161 ttgcataaaa ataaaacgac caaggttacg aacacgatga acccaaccgc ttaaggtaac
    35221 tgtttgtcca aggtgtgagc ggtttaatgc accgcagtag tgagaacgca tcataaaatt
    35281 atccttttga aaataaatat cccaagtttc ggggaaaact taaggattat agcggaaaat
    35341 tcagcgaaga tggataaata aaagcaaaca agcggtgatt tatccttcca gcccaataaa
    35401 aacggctaat aacaatggag cggctaaatt aacaataaaa ccgaagctga ttgccagcgg
    35461 cacaatttga ataccgcccg atttttgaat aatagggagc atacaatcta atgaagtcgc
    35521 tccgccaatg ccgactgcgg tggacggaaa ttgacgcata aacagtggta ctaaaaacag
    35581 gcataaaatt tcacgcgaga tgtcgttaaa aaaggcaata ctgccgtaaa tcgggcccca
    35641 agcatcgttt accaatacgc ttgaaaggga ataccaaccg aatgcagagg caaaggttaa
    35701 gcctttagca agggataaat ctaaggtgaa tgccgaaatc acgccaccaa tcagggaact
    35761 tgccaccatt acaatcgagg tataaatccc ccgcttgtta aagaacactt cacgcagggg
    35821 aataccgctg tttcgcagtt gaatccccac cccgaaaatc atcacttcta acacataggt
    35881 gctggcgtgc agagggaaat ccaccacgcc tttggtgaaa tagccgatga tcccgcctaa
    35941 taaggtaatg ccgattaatt taaaggaatc aatcaacaaa tgcaggcggg agggaagttg
    36001 atcttgattg actttgtctc ttttcatcgg ttgtaatttg tcgtaaatca ccaagccgat
    36061 aatgtttgaa aggagtaaaa tcaccactaa actaaacgcc gtaccgccaa tctgtggcag
    36121 ttcggtgaga atgttatcaa tttgtccgag agaaatcccc atcactaata aaatcaagta
    36181 aaggcagagg ctgaccactc tgtttactat tgccatatgg cggtggtttt tgagggttat
    36241 taagtaaccg agaaaaagtg gaatcagcac aatggctaaa ccgtagagca ttttttatcc
    36301 tttttatcgc tatttttaaa cttgaaattc taacaataag ggcataaaat aaaactgttt
    36361 ttatatacag ttatttgtgt tgcaagcggt cgtttttggg gaaaatattg caaatgtcga
    36421 ttcaagctaa acataagcga aaaattatcc atattgatat ggattgtttt tatgcagcgg
    36481 tcgaaatgcg ggaaaacccg gcgttggtcg gtaagccggt ggcggtgggc ggcaatgcta
    36541 atcaacgagg tgtgctgaca acctgtaatt acgaggctcg aaaattcggc ttacacagtg
    36601 caatgccaac ggcaactgcg ttgaagaaat gcccgaattt aattttattg ccggtgaata
    36661 tggcgttgta taaatcggtt tccgctcaaa ttcacgaaat ttttcatcgc tatacggatg
    36721 tgattgaagc cttgtcgctt gatgaagcct atttagatgt aaccgaatgc gaacgctatt
    36781 ttggctccgc cacttggatt gctcaagcaa tccgcaatga tattttcaat gaattgcatt
    36841 taactgcctc ggcaggagtt gctccgctta aatttttagc aaaaattacc tccgatcaaa
    36901 acaaacctaa cggacaatgt gtgattacgc ctgatgatgt gcaaaatttt gtgaaaaatc
    36961 taccgcttgc aaaaattccg ggtgtgggga aagtaaccaa tgaaaaatta aaacagcttg
    37021 gctttgaaac ctgtggtgat attcagcaag cagaaaaagc ggttatttac cgagcgtttg
    37081 gcaaattcgg gcaacggctt tgggatttta gccacggtat tgatgaacga gcggtagagc
    37141 cttatcgtga aagaaaatcg ctggcggtgg aaaatacgct gttgcacgat atttcaaccc
    37201 ttgagcaagc ggaaaagatt gtggcagatt tattcgacaa actggttttt cggttgcaac
    37261 gaaactgggg cgatacgcca ttaactgagt ttaaaaagtt aggcattaaa ctcaagtttg
    37321 atgattttag ccaaaccacg cttgaacgaa ccaccgatgg ctttgcgtat gagcgatttg
    37381 gcgagttgct acagcaaatt tttacccgaa gaaaggaacg aaaggtgcga ttaatcggtc
    37441 taagtgttca ctttcccgag aaaaaagtga ataaacagtt aaatttgtgg gaataattgt
    37501 aaataatgac ttgaaattaa ggctaaagtc attatcttat tcgtgcaatc attgcatcta
    37561 tatttttgga gattgaaaac attatggcaa aacgtgtcat tctattttta ttaactaact
    37621 tagcgattac ctttgtttta gggatcgtat taaaccttat ttttaaagtg accggcattc
    37681 aagggcaaag cactgccggt attttggtgc tttcgttagt cttcggtttc agtgggtctt
    37741 taatttcgct atttatgtcg aaatcaatgg cattgcgttc ggttggggca gaggtgatta
    37801 cacagcctcg taacgaagcg gagcaatggt tattcaacac tgtacaacgt caggctcagc
    37861 aagcgaatat cccaatgccg gacattgcga tttaccattc ggctgatgta aatgcattcg
    37921 ctacaggagc aacgaaaagt aattctttag ttgcagtcag caccggcttg ctgaattcaa
    37981 tgactaaaga cgaagctgaa gcggtagtag cacacgaagt ggcgcacatt gcgaatggcg
    38041 atatggttac aatgacttta ttacaaggcg tgttaaatac tttcgtcatt ttcttagctc
    38101 gtattatttc gacaatggcg gcaagttcac gtgacgaaaa tggcaattca agcaccaata
    38161 cgctggtgtt ctgggtagta gatattgtgt tacagatggt gtttggtgtg ttagcaacaa
    38221 tgattgcaat gtggttctct cgccaacgtg aatttcgtgc agatgcaggc tctgctcaat
    38281 tagtcggtaa agagaaaatg attgcggcat tacaacgctt gcaacgtgtt cacgaaccgc
    38341 aagaaatgga aggctctctt gctgccttta tgattaacgg tagccgtggt aaagagttgt
    38401 ttatgagcca ccctccgtta gaaaaacgta ttgaagcgtt aagaaactta taaagcacaa
    38461 gcggttgttt ttgtaaaatt ttttgcaaaa cagccgcttt tgttttctat aaaatatgcg
    38521 gtaacaccga atagagagtt gccagcaaaa acagataacg taacaatttc ccaatcacaa
    38581 taaagagaat gctttgccaa aggctaaacc gtagccagcc ggcaatgcca cagaaaatat
    38641 cgcctacaat cggtaaccaa ctaaaaagca agactaacac gccatatttt tcacttttgg
    38701 ctaatgccca ttgtgaataa cgattggtag tattctgtgg gcgagggagt aatagcccta
    38761 tcgcataagt ggttatgcta cctaaactat tacctaaggt tgcaaccaag agtaaattga
    38821 acagtgaaaa tgaggataaa gagccataag tgatgagatg ttggcttgct aaggtagtga
    38881 agataatttc agaatttccg ggtaagaggg tagcgcttag aaatccactc agaaacatag
    38941 taaagagttg attttgttcg gaaaagaata aactgaaaaa ggaagtgaga tattctgtca
    39001 taaaattgta gttggtttgt tattaaaatg tagttataaa ttttcttgaa tgttgtgttt
    39061 tttatggatt ttgttctata tcaaaa
//
LOCUS       DANLZD010000002        37064 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.002, whole genome shotgun sequence.
ACCESSION   DANLZD010000002 DANLZD010000000
VERSION     DANLZD010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 37064)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37064)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37064
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.002"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            120..986
                     /gene="prmC"
                     /locus_tag="PXE26_000051"
     CDS             120..986
                     /gene="prmC"
                     /locus_tag="PXE26_000051"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDL5592682.1"
                     /translation="MDYREWLTFAEQKLLENSGADPYLNAKFDANLLLQAVTKRSKSA
                     IFAFSETLLSESELAELAEKLARRAKGEPMAYILGYREFWSLPLKVSPATLIPRPDTE
                     RLVELALEYANKRLGNQKMLQILDLGTGTGAIALALASELGEKAQIIGVDFQNEAVQL
                     AEENRRNLGLNQVTFLQSDWFSSLANQQFDLIVSNPPYIDESDENLTVGDVRFEPLTA
                     LVADNKGLSDLQKIIENAPLHLKPQGALMLEHGWKQGNLVRDLFDLHLWEQVETAQDY
                     AGNDRVTKAILK"
     gene            995..1861
                     /locus_tag="PXE26_000052"
     CDS             995..1861
                     /locus_tag="PXE26_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB1 family protein"
                     /protein_id="HDL5592683.1"
                     /translation="MDDIIEELLKELEDPKVTISETELKKFLYREILRLTTLIDKNVS
                     EQQVFGQMSALVKKARYNVNGEGDEERINQLLHLVYREWGFHCYYEDYFHTENLLLNQ
                     VIRKRRGMPVSLGAVALYLSAVLDLPLYPVNFPTQLVLRAEIHQPNGATKVRFINPWN
                     GEFLTIEMLNKWLEGEMGFGVEVTPDLLRRAEPQELLERVETVFKMALTREGKYEETL
                     RLIEYRLAFSPEDPYEIRDRGMVLASMDCYQAALEDINYFIDQCPEDPSAEILKMEVK
                     GLQQKSQESVVH"
     gene            1951..2805
                     /gene="kdsA"
                     /locus_tag="PXE26_000053"
     CDS             1951..2805
                     /gene="kdsA"
                     /locus_tag="PXE26_000053"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HDL5592684.1"
                     /translation="MTDKIVKVGNIEVANHKPFTLFGGMNVLESRDMALRVCEQYVEV
                     TQKLNVPYVFKASFDKANRSSIHSYRGPGMEEGLKIFQELKQTFGVNIITDVHEIYQC
                     KPVAEVVDVIQLPAFLARQTDLVEAMARTGAVINVKKPQFLSPGQMGNIVEKIAECGN
                     DQVILCDRGTNFGYDNLVVDMLGFGIMKKVSKGCPVIFDVTHSLQCRDPFGAASGGRR
                     DQVTELARSGMAIGLAGLFLEAHPDPNSAKCDGPSALPLSKLEAFVSQMKAIDELVKS
                     FEEIDTSK"
     gene            3026..3973
                     /locus_tag="PXE26_000054"
     CDS             3026..3973
                     /locus_tag="PXE26_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HDL5592685.1"
                     /translation="MLNIVFLDRTGIPATHDIPRPNFPHTWTEYATTSADQTFERVKE
                     ADIIITSKVLLQRDLLAKLPKLKLIAITATGTNNVDLAAAKELGIAVKNVTGYSSVTV
                     PEHVIGMIYSLKHRLADYHRDLITSDRWATCGQFCYVDYPIHDVRGSTLGIFGKGNIG
                     AEVARLAQAVGMQVIFAEHQGATEIREGYTAFEEVFKQADIISLHCPLTEQTQNLINA
                     ETLALMKPTAYIINTGRGPLIDEQALLEALEQGKIAGAALDVLVKEPPEKDNPLMLAA
                     KRLPNLLITPHVAWASDSAVTTLVNKVTQNMEEFVATGM"
     gene            4071..5243
                     /locus_tag="PXE26_000055"
     CDS             4071..5243
                     /locus_tag="PXE26_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HDL5592686.1"
                     /translation="MNLTPFFIAFRYFRSKSADRFGRLVTNLASLGIVLGVMALVIVL
                     SVMNGLENMQKTNLLSTLPHAIITPQEGHFAKGEKLALPEFAKQSVVINRANVIIQSS
                     QGINAGQLIGVENATDDPLLVAENIPALLPSGEFKVVIGSRLANKLNVTVGDKLRLMI
                     TENSQYTPLGRVPVQRLFEISGVYQSNREASEFTLFANLADVGRLLRISEDQVQGVRL
                     YLQDPFQVTELSQYFDAERYQISDWREQKGEFFQAVKMEKNMMGLLISLIIVVAISNI
                     VTSLSLMVVDKQGEIAILQTQGLTKKQVMQIFVFQGAIVGVIGSIIGGLLGVLIAYNL
                     DQIILLLNPSIHLPTLISGTQIAVIVGVSMLLSLLCTLYPAYRASKIEPAQALRYE"
     gene            5260..5943
                     /gene="lolD"
                     /locus_tag="PXE26_000056"
     CDS             5260..5943
                     /gene="lolD"
                     /locus_tag="PXE26_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HDL5592687.1"
                     /translation="MTELLRCEHISKFYDEGEQKVQVLKEVSFSMNEGELVAIVGSSG
                     SGKSTLLHTLGGLDQPSTGEVWIRGQSLQQLSSDKLALLRNQNLGFVYQFHHLMADFT
                     ALENVMMPMLIGKQNKTEAANRAEKMLQAVGLAHRMTHRPSALSGGERQRVAIARALV
                     NNPALVLADEPTGNLDQKTTESIFELIQQLNQEQNIAFLLVTHDLNLANKLSRSLVMR
                     DGVLSEGSL"
     gene            5940..7205
                     /gene="lolE"
                     /locus_tag="PXE26_000057"
     CDS             5940..7205
                     /gene="lolE"
                     /locus_tag="PXE26_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolE"
                     /protein_id="HDL5592688.1"
                     /translation="MSTPFFISWRYQRGKQKNKLVSLIALFSNIGIALGVAVLIIGLS
                     AMNGFERELNNRVLSVVPHAELVSFQGNQPQPIFDSKKLEALIKKSQNVTASSPFVSF
                     TALIENGAQLKIAQVRGVDPKKQDQASQLSQFIPPEQWQAFNQQFQADEDGLILGAGI
                     AKALEVEAGDEVTLLIPQPTEDGKLAQPLRFNLNVTGILRLDGQLDHSYALIPLNKAQ
                     ELMEYQANEVSGLEISLANPFDVQQLEMPQLNGYTQPLYLNTWIDKFGYMYNDIQLIR
                     TVMYIAMVLVIGVACFNIISTLIMAVKDKQGDIAILRTLGANNGFIRRIFLWYGLISG
                     MKGALFGLILGVILSLNLTAIIKAIEAFFEVKLLSDGVYFVDFLPSELHWQDVVYVLA
                     ATIILSLFASLYPANRAAKLEPAKVLSGH"
     gene            complement(7280..9211)
                     /gene="thrS"
                     /locus_tag="PXE26_000058"
     CDS             complement(7280..9211)
                     /gene="thrS"
                     /locus_tag="PXE26_000058"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HDL5592689.1"
                     /translation="MPIITLPDGSQRSFDNPVSVMEVAQSIGAGLAKATIAGRVNGER
                     RDASDIISQDSTLEIITAKDEDGLEIIRHSTAHLLGHSIKQLFPDVKMAIGPTIENGF
                     YYDIDLDRSLTQEDLDALEKRMLELAKTNYDVVKRPVSWQEARDTFEKRGEPYKMAIL
                     DENIERTATPALYHHEEYIDMCRGPHVPNMRFCHHFKLQKVAGAYWRGDSKNKMLQRI
                     YGTAWADKKQLAEYLQRLEEAAKRDHRRIGKALDLYHMQEEAPGMVFWHNDGWTIFRE
                     LETFVRTKLKEYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSENREYAIKPMNC
                     PGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ
                     IESEVISCIKMVYDIYSTFGFTNIAVKLSTRPENRIGDDAMWDRAEKGLANALRNNGL
                     EYEIQEGEGAFYGPKIEFALRDCLGREWQCGTVQLDFALPGRLAASYVAEDNGRRTPV
                     MIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNITDSQADYVQQVVKQLSDAG
                     IRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTRKGADLGTYLVSDL
                     VEILKNQIKARELKLLGEE"
     gene            complement(9378..10727)
                     /locus_tag="PXE26_000059"
     CDS             complement(9378..10727)
                     /locus_tag="PXE26_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5592690.1"
                     /translation="MNSTKFYSLYSGIFFLFFGYGLFLNSAGIKLAEMGITDIIIGLL
                     NAAFFIGAALSTIFAHRIVSSVGHIRSFSVFCAVFAIAALGHIMIDTLWIWGVLRIIL
                     GFCHYSLLLLVESWLSEKTNVDTRGKVLATYNIIFYLAFILGVSLLSLELSSRNIFIL
                     STILVVMSMIPIALTKMVQPDIPARERISIPKLFAISPLALATSFISGMLVNGFFTMA
                     SVFLLKFSFSLSEISLYLMISMIGGFISQMPMAILSNRIGRRNAILACSVIATLTALA
                     GLFAIFQENLTAWGQYIIAFFFGCSLFSLYALSIARANDELPNNMNTVEVSRGLLFCY
                     GVGALVAPPLIGFAMSLSAEYGFYALFGLFSLSLFICAFRTKSIPKAERAEMQYATPI
                     ATASPLEEIEVVEDALIPFDEEAVQEYQAQLEILEQDPQTENENIELDEGAAENSKV"
     gene            complement(11002..11493)
                     /locus_tag="PXE26_000060"
     CDS             complement(11002..11493)
                     /locus_tag="PXE26_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HDL5592691.1"
                     /translation="MFTTQLIQTKRWLEANSITTFWLKTFIGATLLAIFAQISVPMYP
                     VPITGQTLALTVVGFAMGRKAATAAVLLYLFEGAIGLPVFAGGASGFHHFFGPTGGYL
                     LGYIPTAYFLGYYSDKGVLNSFWKSLFVALIASVITFAFGLAQLSLYQKAQYYKRAYI
                     HLF"
     gene            11574..12341
                     /locus_tag="PXE26_000061"
     CDS             11574..12341
                     /locus_tag="PXE26_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--protein ligase"
                     /protein_id="HDL5592692.1"
                     /translation="MVKPVYIYCDEGSSEIGVQSLLLAVKQHLQRPAYLINAKQIIQS
                     KFSDGCLLIMPGGADLPYCKKLNGEGNRRIRQFIEQGGAYLGICAGAYYGCAELNFVG
                     RDYSVNGNRELALFNGIAGIAKGSLPQFTNGQLYDKNIGSKAIVEVTLAEGGKMPFYY
                     HGGCCFEPNSTTVIYNPLAYYPDGSVAMIEGELGRGYYLLSGVHFELQAVVYWQKIVN
                     CCENLDIKTQEEAICSNFNVNYGSQIWQHLKQRLNQA"
     gene            complement(12332..13126)
                     /locus_tag="PXE26_000062"
     CDS             complement(12332..13126)
                     /locus_tag="PXE26_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HDL5592693.1"
                     /translation="MRFFDTHTHLDYLAESLNLSIPELVENAKQHQVECILIVAVFAK
                     NFAKVTACAKQKPENLVYGLGLHPLYIQQHQQQDLILLENLLSQQDPQCTAIAEIGLE
                     KAVSEVSTPELWKKQCEFLEAQLSLAKKFNLPVNLHSRKSHDQLFVFLKKAQLTKTGV
                     VHGFAGSYEQAKRFVDLGYKIGVGGTITYERANKTREAIRKLPLESLLLETDSPDMPV
                     FGFQGQPNRPERLLVTFNSLCELRTESPNLIAETIWQNSERLFFYA"
     gene            complement(13187..14773)
                     /locus_tag="PXE26_000063"
     CDS             complement(13187..14773)
                     /locus_tag="PXE26_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005667512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HDL5592694.1"
                     /translation="MLWFFFCVAVLVLGYFTYGKIIEKIFVINPKRATPAYAMNDGVD
                     YMPMSKTKIWLIQLLNIAGTGPIFGPILGALYGPVAMLWIVIGCIFAGAVHDYFCGML
                     SIRNGGATMPNLAGKFLGRPVKLFINVMALILLLLVGVVFVASPAQLLSTITMDIAGA
                     TQSAMELGDVEAIKESVASGGVTVWGMDKATVISVWTLIIFAYYILATLLPVDKIIGR
                     IYPFFGALLLFMSVGMVYGLVSAHLSATDPIDFFRTVNADGQGLTWEKFTQNFQVKGD
                     VPIWPLLFLTISCGALSGFHATQTPLMARCAQNEKEGRFIFYGAMITEGVIALVWCAV
                     GLSFYENPQALQDAISAGSPSKVVYDSSLHFLGFIGGIFAVLGVVVLPITSGDTAFRA
                     ARLQLAEIFGLEQRTLVKRLYIAVPLFVLGFIVSKVDFSVLWRYFTWANQMTAMVMLW
                     TAAGYLYRYKKFHWVCSIPAWFITTVCATYLANNKIGFGLDYELSVYIGFAITVVCVI
                     CFFAFLKPSEARDEDAYVTN"
     gene            complement(14959..16812)
                     /gene="dxs"
                     /locus_tag="PXE26_000064"
     CDS             complement(14959..16812)
                     /gene="dxs"
                     /locus_tag="PXE26_000064"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HDL5592695.1"
                     /translation="MEKKYPLLSEINSPEDLRLLSKDQLQTVVDELRAYLLESVSQTS
                     GHLASGLGVVELTVALHYVYQTPFDQLIWDVGHQAYPHKILTGRRDQMHTIRQKDGIH
                     PFPWREESPYDVLSVGHSSTSISAGLGIAVAAEKENAGRKTVCVIGDGAITAGMAFEA
                     LNHAGALHTDMLVILNDNEMSISENVGALNNHLARIFSGSLYTSVRDGSKKILDKVPT
                     IKNFMKKSEEHMKGVIFSPESTLFEELGFNYIGPIDGHNIDELVKTLSNMRELKGPQF
                     LHIRTKKGKGYTPAENDPIGYHGVPKFDPTAAELPKSKAAPTYSNIFGDWLCEMAERD
                     PKIIGITPAMREGSGMVEFSKRFPEQYFDVAIAEQHAVTFGAGLAIAGYKPVVAIYSS
                     FLQRAYDQLIHDVAIQNLPVIFAIDRAGIVGADGQTHQGAFDLSFMRCIPNMTIMAPS
                     DENEMRKMLYTAYTMNTPSAIRYPRGNAKGVKLEPMQRLEVGKGNIIREGKKVAILNF
                     GALLDEAKIVAEKHNYTLVDMRFIKPLDEALLQKVADSHELLVTLEENAIQGGAGSFV
                     NEYLQNIGKIKPLVMLGIPDFFVPQSTQAEAYADLGLDAQGIEAKIQKFDI"
     gene            complement(16857..17669)
                     /gene="suhB"
                     /locus_tag="PXE26_000065"
     CDS             complement(16857..17669)
                     /gene="suhB"
                     /locus_tag="PXE26_000065"
                     /EC_number="3.1.3.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-1-monophosphatase"
                     /protein_id="HDL5592696.1"
                     /translation="MNPMLNIAIRAARKAGNIIAKGYEQSPQDTQVLQKNTNDYVTEI
                     DKAAEAAIIDVIRKSYPEHSIVTEESGVLNGSNENVQWVIDPLDGTTNFVKRLPHFAV
                     SIAVRENGRTTVGVVYDPIRNELFTAVRGEGAKLNEFRLRIDAERRDLKGTVIATGFP
                     FKVIRHRDAHLNMLEGLMNNGVADFRRTGSAALDLAYVAAGRVDGFFEIGLKPWDFAA
                     GELIAREAGAIVTNFVGGTDYLKTGNLVVGNGRVVKEILNSIQPTLTEELKA"
     gene            17850..18884
                     /locus_tag="PXE26_000066"
     CDS             17850..18884
                     /locus_tag="PXE26_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA methyltransferase"
                     /protein_id="HDL5592697.1"
                     /translation="MQFKENNQPRFKHREERRSDECSPRFSDKGKMRGNEGKSDRPHK
                     LHFKRDEAYSRSEQIYPAEGKKASGEGSVQIWVKGGNSSVKEKKNGPLSPRAPEKIKK
                     NRLEEMKVYGENACISLFQQRPESIVRLWATVEGAKKLGDLMSYLAQHKKAYHVIDRE
                     EMERVTGTEHHGDMCLLVKKTASFVLEGYLQVPKKQDCLVLLDGVNNAQNVGGIIRTC
                     AFYGVKGIITENVDSLNSSAAARVAEGGLEFVRALETKNKHIALVQLRQAGYQIVHLT
                     RHKQAPSLTKIKLAEKVVFVLSEIPASDVAYAEDTTIQLSFNNPLNSGLNVAVNAGIL
                     LNQWYQTHIL"
     gene            18894..19778
                     /locus_tag="PXE26_000067"
     CDS             18894..19778
                     /locus_tag="PXE26_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HDL5592698.1"
                     /translation="MNQQKPFEVIAIVGTPRHDSAFETHLAVYNWLKDRDYQILVETE
                     VATQLQLKESYSLDQIGQRAELVIVIGGDGNMLGIARALAKYRVPLIGINRGNLGFLT
                     DIAPQTAFEQLYSCLVKNEYVIEERFLLEAFIERNGKIIAANNALNEIVVHPTQVARI
                     IEFEVYIDGKFAFSQRADGLIVATPTGSTAYSLSAGGPILTPNMNAMALVPMHPHTLS
                     SRPLVVDGDSQISLRFAKYNTPDLEVICDGQVNMHFTPEDRVLVRKSPDKLQLLHLKD
                     YSYFTVLGSKLGWASKLF"
     gene            19917..20894
                     /locus_tag="PXE26_000068"
     CDS             19917..20894
                     /locus_tag="PXE26_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1852 domain-containing protein"
                     /protein_id="HDL5592699.1"
                     /translation="MTTNFKCQVHTIEFNEDYQPEQSTRLTTNFANLARGENRKQNLQ
                     NAIAMINNRFNDLANWDNPNADRYSVKLDIVSLDIDVEGKGEFFPAIEWLKTYVIDYK
                     TGKTIDGIIGNNFSSFVRDYDFSVLLLDHNKDKPQFSVPEGYGELHGKLFKHLLASPE
                     YTAKYKKPPVICLSVATTRTYTRTTNVHPILGVEYLQDSYSLTDAYFAKMGLKVRYFM
                     PPKSVAPYAFYFDENADLLNDYTNLELISTIATMEAFQKIYRPEIYNANSVAGQVYKG
                     SLTYQDYSVTKVEYDREERTQLAIKQGKYTEEHFIKRYQAILEAWATEE"
     gene            20982..22013
                     /locus_tag="PXE26_000069"
     CDS             20982..22013
                     /locus_tag="PXE26_000069"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HDL5592700.1"
                     /translation="MSNILLPTSTAGSLPKPSWLAEPEKLWSPWKFEGEELLQAKRDA
                     LLVSLAEQIAAGIDIVSDGEQTRQHFVTTFIEHLEGVDFSKREIVRIRNRYDASVPSV
                     VGAVSRPKSVFVDDAKFLRAHTDKPIKWALPGPMTMIDTLYDGHYKSREKLAWEFAKI
                     LNEEAKELEAAGVDIIQFDEPAFNVFFDELNDWGVAALERAAEGLKCETAVHICYGYG
                     IKANTDWKQTLGNEWRQYEESFPKLQQSKIDIISLECQNSRVPMDLIELVRGKKVMLG
                     AIDVATNIIETPEQVADTLRKALQFVDADKLYPSTNCGMAPLSRQVAQGKLQALSQGA
                     AILRAEFAK"
     gene            22101..22322
                     /locus_tag="PXE26_000070"
     CDS             22101..22322
                     /locus_tag="PXE26_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592701.1"
                     /translation="MLNLFKKPIKKSSFEAWAKLMDDVAKVAILAIPVILYGEYSLLM
                     KFTHSITLFAVVYFLLATARLFRETAEEM"
     gene            22598..23860
                     /locus_tag="PXE26_000071"
     CDS             22598..23860
                     /locus_tag="PXE26_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000919159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HDL5592702.1"
                     /translation="MLKRDMNIADYDAVLWQAIQDEDRRQEEHIELIASENYASPRVM
                     QAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKALFGADYANVQPHSGSQAN
                     AAVYMALLNPGDTILGMSLAHGGHLTHGASVSFSGKIYKAEQYGITDEGLIDYEALRK
                     QAQEVKPKMIVAGFSAYSQVMDWAKMREIADEVGAYLFVDMAHVAGLIAAGVYPNPLP
                     HAHVVTTTTHKTLAGPRGGLILSASGDEEMYKKLQSAVFPAGQGGPLMHVIAAKAVCF
                     KEALEPEFKAYQQQVVKNAKAMVEVFKQRGFDVVSNGTENHLFLVSFVKQGLTGKAAD
                     AALGAANITVNKNSVPNDPQKPFVTSGIRVGTPSVTRRGFKEAEVTALAGWMCDVLDS
                     IGKDNHEQVIAETKAKVLDICKRLPVYA"
     gene            24018..24854
                     /locus_tag="PXE26_000072"
     CDS             24018..24854
                     /locus_tag="PXE26_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HDL5592703.1"
                     /translation="MLPRISSFLASLFMAFFLLGCSVSTQSLNEQNVDSIGQIIDLNT
                     NQTISFTELLSRLSSQDYVLVGEEHTQLIHHQIELYLFNQLTKKAKLHLIALEMLNVD
                     QQPAIDRIQFNRPVNLSATDLREAIQWQKWDWKMYQDLVVESLGSNSRVIATNLTDKE
                     VEILLNGAEPLKGSVSTSSEVKQKIAQLLLSMNHGMPYPMENMVAVQQFRDRRMAEKL
                     VKNALSTSLLIAGNHHVRKDLGVPLHIAEYDRTKKVAVLMLKTEREEITSSQADYLWV
                     TQ"
     gene            24908..27065
                     /locus_tag="PXE26_000073"
                     /pseudo
     CDS             24908..27065
                     /locus_tag="PXE26_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484758.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            27172..27810
                     /gene="purN"
                     /locus_tag="PXE26_000074"
     CDS             27172..27810
                     /gene="purN"
                     /locus_tag="PXE26_000074"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HDL5592704.1"
                     /translation="MKKFVVLISGNGSNLQAMIDAQKSADTSGQICGVICNKADAYGL
                     IRAKQAGIPTFVFSRKDYQSNVEMDLAIAEQIEQLGAELIVLAGYMKILTPEFTQHFA
                     GKILNIHPSLLPKYPGLNTYQRAIEAGESEHGTTIHFVNEEVDAGAVVLQAKVPIYPE
                     DEIEDVMARVVEQEHRYYPLVIEWFCSGRLVSQHGKAYLDGKLLPACGYAED"
     gene            complement(27831..28637)
                     /locus_tag="PXE26_000075"
     CDS             complement(27831..28637)
                     /locus_tag="PXE26_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5592705.1"
                     /translation="MSNLLTCQNLSIVHQQKKLLEIQEIAFEQGKFTAIIGPNGAGKT
                     TLLKALSGNNAQTNSAVFYQHQRLTDLNGYALAQKRAMLSQQSQIAFPLKVEELVQLG
                     REPYRQSEFAKFNEKITAWAMETMSLTALKERSSIQLSGGEQHRAHIARVLAQLVPEP
                     NADLSGSWLLLDEPTNHLDIHHQYQLFSLLQKLKQQGLTIIAILHDPALAINQADHIL
                     MLKNGEKFAEMSAKAIAESCLLDELYEMKMGCRYCPHSGQYYLCPALAES"
     gene            complement(28637..29623)
                     /locus_tag="PXE26_000076"
     CDS             complement(28637..29623)
                     /locus_tag="PXE26_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5592706.1"
                     /translation="MKLHLTLIFTLIISLVICTHLGAMSLPLSAWHCNNAECESAAYI
                     LWQIRLPRLLGALFIGAALAISGATMQGLFRNPLVDPGIIGVSSGAALAAALYIVVIQ
                     PLLPESISYYALPIAAFLGGWLVTFMLYLLSQRNGQLHIAIMLLIGIALAAFSGALTG
                     ILIYVADDNQLRSLTFWSMGSLAGMNWQMVAMMAAVVFICSPLIWREHRALNALTLGE
                     EDAQYIGFDIAKVKRRLVFYVALLTGTSVACVGAIGFVGLVIPHLMRLLGGSNHRHLL
                     LNSLVCGAILLMIADTLARTLAAPAEIPIGIFTALFGAPFLAVMVWKSGKHI"
     gene            complement(29634..30500)
                     /locus_tag="PXE26_000077"
     CDS             complement(29634..30500)
                     /locus_tag="PXE26_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5592707.1"
                     /translation="MEYKMRTLLFSFIALSMCLNTTKAAEKIVSTAGYASEIVAALGK
                     ADKLVGVDTTSVKPQTIMEKKPKIGYRRQLSAEGILSLTPDLIILAPDAGPNAVIEQI
                     KASGIPLLHLGEKPSLAGIREDIQQIAKAIGAESEAKQLTETILADEKKLADIRSQHS
                     TDKEVLVLIDTASQGIFGLGKKSVGDHFLTLLNLNNSFNAEGNKPLANEALAASNADV
                     ILLASRNQAKESATISKLAESSPQYAQLTNTQAGKKGCVFAINILDALGFGPYTAQYA
                     HQILTTIQPCLK"
     gene            30607..32766
                     /locus_tag="PXE26_000078"
     CDS             30607..32766
                     /locus_tag="PXE26_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
                     /protein_id="HDL5592708.1"
                     /translation="MQIKQTVLAIAITPFISQLSLAQETKISSIELDTIEVNEQQENL
                     LKQQAVMSNEDLVRYSTDMGVPQTGRFGPQGFNIRGVEGNQVAVTVDGISQAASNNYA
                     TFSRYSYYNKSRPEIDTELMSDVTIEKGSSTKVGNGALGGSVNYKTKTVSDILMKGRQ
                     FGGMLKYTYNGQNKENIETAGIAADGQYADALVMYSHRQGHETQTTSKGPDIMGSGRG
                     LPNPYKNNQYSYLAKLGLKWNDENRLELKTSKQRSKNAGQELSYSTVTLRDFLDVQEI
                     ETYGVTYLYTPKNSILENIKVAVTKQDTEISGINDQITIARGTKTDNTKRAFNTKNVE
                     GSLGVTFKPVDLGNTEHKLSTELGYGVSDFSFDMQTYTAGITPTDQNMQSPAKTKSFH
                     ILMGDSILLTQNLSAHLNARYEQSKLHSDDNSLSDKTFNNWAGDIGLNYQLSPVWQIG
                     YKLSRGFRTPTASEMFFNREVQGRGASQTFLANTNLKPETSLGNEISLVGNGSLGSLS
                     VAAYHTHYRNLIDLATIGNNIYQSQNVNRAKIKGVDINGTLDLNTAWNAIPQGFELNG
                     GFGYARGKRNDGTDLLTVQPLKALFGIGYRAVNNDWAIHLNGTYTQGKKAKYAQQYAI
                     LANTGYLSYDKSLTTYPYLSNSATVFDLVAHKKFGERAIVKVGVYNLFNKKYWTWDSL
                     RTIGITSPGVANSITGEGLNRYLAPERYVMASVEFKF"
     gene            complement(32976..33371)
                     /locus_tag="PXE26_000079"
     CDS             complement(32976..33371)
                     /locus_tag="PXE26_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5592709.1"
                     /translation="MKKLMIFATTAMIVSNLAHAAGEQSDAREAHESTVKTSTVKYSC
                     QNGKKLSVKYGFNKQGIPTYAEAKLSGKKRFMPINLYTTDATGTNFGDENNFSLYGDP
                     MEFTNHRKASVNIQSPASEILYKGCTPQK"
     gene            complement(33551..35146)
                     /locus_tag="PXE26_000080"
     CDS             complement(33551..35146)
                     /locus_tag="PXE26_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5592710.1"
                     /translation="MELLAVNNLDVYLKTDEELVHAVRNVSFSIEKGQTLAIVGESGS
                     GKSVTSMAIMQLLPKNIVSFGERSSIIFEEQNLLTLSEKAMQTVRGDRIGMIFQEPMT
                     SLNPYMPIGKQVAETVQTHNPQISNAEAEKMVLETLQKVKIPDAEKKMICYPHEFSGG
                     QLQRIMIAMAIINKPDLLIADEPTTALDVTTQAEILDLMHDLQRDMGMAIILISHDLR
                     LVHKYSDLVCVMQNGEIIERGETETVFTNPQHPYTVELLTPIPTNLKGELPPNAPTLL
                     QGEHIKVDYILKRSLFGKPKKVFNALKDISLHLKTGETLGIVGESGSGKSTLGRAIMQ
                     ILDYRGNITFAGKTLANLNKAERQALKKDMQMVFQDPFNSLSPRLTVGEIIAEGLTVH
                     CPQMSKTERREKVMKMLEEVNLNPAMINRYPHEFSGGQRQRIAIARAIILEPKFVLLD
                     EPTSALDRSTQITVIELLNRLQKKYGLSYIFISHDLAVIKALSDRVIVMSQGEIVESG
                     DVTQIFENPQQEYTKRLILASNL"
     gene            complement(35156..36055)
                     /gene="oppC"
                     /locus_tag="PXE26_000081"
     CDS             complement(35156..36055)
                     /gene="oppC"
                     /locus_tag="PXE26_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppC"
                     /protein_id="HDL5592711.1"
                     /translation="MQNSSKNQPLVEVTSTIQGRSLWQDARRRFFRNKAAVASLIILC
                     CIILFITFAPMLMPFSYEDTDWNMMGIAPDFESQHYFGTDSSGRDLLVRVAIGGRISL
                     MVGIAGALIAVLIGTIYGAISGYFGGKVDMVMMRFLEILSSFPFMFFVILLVTFFGQN
                     IFLIFIAIGMVAWLNLARIVRGQTLSLKNKEFVEAAIVCGVSRRQIIWRHIVPNVLGL
                     VVVYASLEVPSLILFESFLSFLGLGTQEPMSSWGALLSDGAAQMETSPWLLAFPAFFL
                     CLTLFCFNFIGDGLRDALDPKDK"
     gene            complement(36070..36993)
                     /gene="oppB"
                     /locus_tag="PXE26_000082"
     CDS             complement(36070..36993)
                     /gene="oppB"
                     /locus_tag="PXE26_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppB"
                     /protein_id="HDL5592712.1"
                     /translation="MLKFIFKRLLEAIPTLLILITFSFFLMRLAPGSPFTSEKAYPPK
                     VMANIEAKYHLNEPLYKQYFLYMENLSKGDFGPSFKYKDQSVNNLIASAFPVSIKLGI
                     TAFIFAVLIGLTAGTIAALKQNSKWDYLVMGFSMTGIIMPSFVFAPLLVLMFAIYLKW
                     LPAGGWNGGQLYYMVLPVLSLTISYVAGIARITRGSMIEVLHSNFIRTAKAKGLPMRK
                     IIFKHALRPALLPVITYLGPAFVGIITGSMVIESVFGLPGIGQLFVNGALNRDYSLVL
                     SLTILVGTLTILFNAIVDILYAVIDPKIRYS"
BASE COUNT        11281 a         7396 c         7925 g        10462 t
ORIGIN      
        1 ggtcattcaa gaatggcgat tcagcaaaat atgggagaca aagtttattc aggtggttgt
       61 gtaacagctg ataaagcaga agagtattta gatatcctaa aaaatagaaa ttctaaataa
      121 tggattaccg agagtggctc acttttgctg agcaaaaatt acttgaaaat agcggggcag
      181 atccatacct aaacgcaaaa tttgatgcaa atttgctatt gcaagcagtc acaaaacgtt
      241 caaaatcggc catttttgct ttttcggaaa ccctactttc tgaaagcgag cttgcagaat
      301 tagcggaaaa attagctcgg cgtgccaaag gtgaaccaat ggcatatatt ttaggctatc
      361 gggaattttg gtcgttgccg ttaaaggttt caccggcaac gctgattcct cgccctgata
      421 cggaacgact ggttgagttg gcgttggaat atgctaacaa gcggttagga aatcagaaaa
      481 tgttgcaaat tctggatctc ggtaccggca cgggggcgat tgcgttggca ctggcgagtg
      541 aattaggcga gaaagcccaa attatcgggg tggatttcca aaatgaggcg gtgcaactgg
      601 cagaagaaaa tcgccgaaac ttaggcttaa atcaagttac atttttacaa agcgattggt
      661 tcagttcgct tgcaaatcaa caatttgatt taattgtctc aaatccgcct tatattgatg
      721 aatcggacga aaatttgacg gtgggagacg tacgttttga acctttaacc gcattagttg
      781 ccgataataa ggggttgagc gatttgcaaa aaatcatcga aaatgcaccg cttcacttaa
      841 aaccgcaagg ggcgttaatg ctggaacacg gctggaaaca aggtaacttg gttcgagatt
      901 tatttgattt acacttgtgg gaacaggtag aaactgctca agattatgcc ggcaatgacc
      961 gagtaaccaa agcgatttta aaataaggca gaaaatggac gatattattg aagaattgtt
     1021 aaaagagttg gaagatccga aagtaaccat cagcgaaacc gagctgaaaa agtttcttta
     1081 tcgtgaaatt ttacgattaa ctacgctcat tgataagaat gtaagtgagc aacaagtgtt
     1141 tggtcagatg tctgcgttgg tgaaaaaagc tcgctataac gtgaatggcg aaggcgatga
     1201 agagagaatt aaccaattac ttcatttagt ctatcgtgaa tggggctttc attgctacta
     1261 tgaagactat ttccacaccg aaaatttgtt gctaaatcaa gtaattcgca aacggcgtgg
     1321 aatgccggtt tcacttgggg cggtggcgct ttatttatcc gccgtattgg atttgccgct
     1381 ttacccggtt aattttccga ctcagcttgt gttacgggct gaaatacacc agccgaacgg
     1441 ggcaaccaaa gtgcgtttta tcaacccgtg gaacggtgaa tttctcacca tcgaaatgct
     1501 gaataaatgg ctggaaggag aaatgggctt tggcgtagaa gttacccctg atttgttaag
     1561 acgagcagaa ccacaagagt tgctggaaag ggtcgaaact gtgtttaaaa tggcacttac
     1621 ccgtgaaggc aaatatgaag aaaccttacg cttgattgaa taccgcttgg catttagccc
     1681 ggaagatccg tacgaaatca gagaccgagg aatggtactg gcaagtatgg attgctacca
     1741 agcagcatta gaagatatta attatttcat tgaccaatgc cctgaagatc cttctgccga
     1801 aattttaaaa atggaagtga aaggactgca acaaaaaagc caagaaagtg tggtgcatta
     1861 agctgagaag tagccccaaa ggggctgagc tatgattaac ctagtacggc tctgccgtgc
     1921 taggcagaaa ataagaaaca aggactccct atgacagata aaattgtaaa agttggcaat
     1981 attgaagtgg ctaatcacaa accgtttacg ctttttggtg gtatgaatgt gctggaaagc
     2041 cgtgatatgg cacttagagt atgtgagcaa tatgttgaag tcacgcaaaa actaaatgtg
     2101 ccttatgtgt tcaaagcctc atttgacaaa gcaaaccgtt cttcaatcca ctcttaccgt
     2161 ggaccgggaa tggaagaagg cttaaagatt ttccaagaat taaaacaaac ctttggcgtg
     2221 aacatcatta ccgatgttca cgaaatttac caatgtaaac ctgtggcaga agtagttgat
     2281 gtgattcaac taccagcatt tttggctcgc caaaccgatt tagtggaagc aatggctcgt
     2341 accggtgcgg ttattaacgt taaaaagccg caatttttaa gcccgggtca aatggggaat
     2401 atcgtagaaa agattgctga atgcggcaac gatcaagtga ttttgtgcga ccgtggcact
     2461 aactttggct acgataatct agttgtggat atgcttggtt tcggcattat gaaaaaagtg
     2521 tcgaaaggtt gcccggtgat ttttgatgtg actcactcat tacaatgccg tgatccattc
     2581 ggtgcggctt ccggtggtcg cagagatcaa gtaaccgaac tggcacgctc cggtatggcg
     2641 attggtttag ccggcttgtt cttagaagct cacccggatc caaactcggc gaaatgtgat
     2701 ggtccatctg cattaccgct gtcaaaatta gaagcctttg tttcacagat gaaagcgatt
     2761 gatgagttgg ttaagagctt tgaagaaatt gatacttcca aataaacttt ctccgcatta
     2821 aatcctttcc tactttcttt gcttcgccaa agaaagtagg caaagaaagg cgaccctact
     2881 tcgctacttt tcttcgctta gtgtgaatgg gcttaacgaa aaatttacat tcgcttcgct
     2941 cagagtaaat tttcctaccc attaaaacac gctcaggtag ctcagaaggg agttagaaag
     3001 gtaaaagaca gaataggaga aaaaaatgct aaatattgtt tttcttgacc gtaccggtat
     3061 tcctgccact cacgatattc ctcgtccgaa ttttccacat acttggacgg aatatgccac
     3121 cacctctgcc gatcaaactt ttgagcgggt aaaagaagcg gatattatca ttaccagcaa
     3181 agtgttactc cagcgtgact tgctggctaa attaccaaag ctgaaattaa ttgcgatcac
     3241 agcaaccggc acgaacaatg tggacttagc ggcagcaaaa gagttaggga ttgcagtgaa
     3301 aaatgtaacc ggctattcca gcgttaccgt gccggaacac gtcattggta tgatttactc
     3361 cctgaaacat cgtttagccg attatcaccg tgatttaatt acgtctgacc gctgggcaac
     3421 ttgcggccaa ttttgctatg tagattaccc gatccacgat gtgcgaggct caaccttagg
     3481 cattttcggt aaagggaaca tcggggctga agtggcacgg ctggcacaag cggtcggaat
     3541 gcaggttatt tttgcagaac atcaaggcgc aactgaaatt cgagaaggct acaccgcctt
     3601 tgaagaggta ttcaaacaag cagatattat ttcactacac tgccctttaa ccgagcagac
     3661 tcaaaacctg attaatgcag aaaccttagc cttaatgaag ccgaccgctt atattatcaa
     3721 tacgggtcga ggcccactga ttgatgaaca ggcattgctt gaggcattag agcaaggcaa
     3781 gattgccggc gctgcgttag atgttttagt gaaagagccg cctgaaaaag acaacccttt
     3841 aatgttagcc gcaaaacgtt taccgaattt actgattacc ccacacgttg cgtgggcaag
     3901 cgattctgcg gttacaacac tagtgaataa agtgacacaa aatatggaag agtttgtagc
     3961 aacgggtatg tagcttgaag taggggctgg tcctgtgcca gccctaatat taatagaatg
     4021 agagggcggg tataaaaccc gcccctacca atatcatttt agaaaaacag atgaatttaa
     4081 cccctttttt tattgctttt cgctatttta gatcgaaaag tgctgaccgt ttcgggcggt
     4141 tagtcaccaa tcttgccagc cttggcattg tgctgggcgt aatggcattg gtgattgtgc
     4201 tgtcggttat gaacggtttg gaaaatatgc agaaaaccaa tctgctatcc accttgccgc
     4261 acgctatcat cacccctcaa gaggggcatt ttgccaaagg tgaaaaactg gctctacctg
     4321 aatttgccaa gcaaagtgtg gtgattaacc gtgcgaatgt gattatccaa agttcacaag
     4381 gcattaacgc cggtcagtta atcggcgtgg aaaatgccac agacgatccg ttgttagtgg
     4441 cggaaaatat ccccgcatta ttgcctagcg gtgaatttaa ggtagtaatt ggctctcgtt
     4501 tagccaataa attgaacgtt acggtaggcg ataagctccg cttaatgatc actgaaaaca
     4561 gccaatatac gccacttggg cgagtgccgg tacagcgttt gtttgaaatt tcgggcgttt
     4621 atcaatctaa tcgtgaagcg agcgaattta ccctctttgc taatttagct gatgtcgggc
     4681 gtttgcttcg catcagcgaa gatcaagtac aaggcgtgcg tttatatttg caagatcctt
     4741 tccaagttac cgaacttagc caatatttcg atgcagaacg ctaccaaatc agtgattggc
     4801 gtgagcaaaa aggcgaattt ttccaagcgg tgaaaatgga aaaaaatatg atgggcttac
     4861 tcatcagcct gattattgtg gttgcaattt ccaacattgt gacttcactc agtttgatgg
     4921 tggtagacaa acagggcgaa attgcaattt tacaaaccca aggcttaacc aaaaaacaag
     4981 tgatgcagat ttttgtgttc caaggggcga ttgtcggagt aattggctcg attattggtg
     5041 gtttgctcgg cgtattgatc gcctacaatt tagatcagat tatcctgcta ttaaacccga
     5101 gcatccatct gcctacccta atttcaggca cgcaaattgc ggtcattgta ggggtgtcga
     5161 tgttgctttc actcctttgc acgctttacc cggcataccg agcctcaaaa attgagccgg
     5221 cacaggcatt gagatatgaa taataagaac ggaaataaaa tgacagaatt acttcgctgt
     5281 gaacatatca gcaaatttta cgatgagggc gaacagaaag ttcaggtgct aaaagaggtg
     5341 tcattttcga tgaacgaagg tgagctggta gcgattgtcg gtagttcagg ttccggcaaa
     5401 agcaccctat tgcacacatt aggcgggcta gatcagccaa gcaccggtga agtctggatt
     5461 cgagggcaat ctctgcaaca gctcagttca gacaaattag cgttattgcg taaccaaaac
     5521 ttaggctttg tgtaccaatt tcatcactta atggcagact ttaccgccct tgaaaatgtg
     5581 atgatgccga tgctgatcgg caaacagaac aaaactgaag ctgccaatcg tgccgagaaa
     5641 atgctacaag cggtcggatt agctcatcga atgacacatc gcccatcagc actttcaggc
     5701 ggcgaacgcc aacgggtggc gattgcccga gcgttggtta ataatccggc tctggtactt
     5761 gccgatgaac cgaccggtaa tttagaccaa aaaaccactg aaagcatttt tgagctgatt
     5821 caacagctca accaagagca gaacattgcg tttttattag taacgcatga tttaaatcta
     5881 gcgaataaac tttcacgtag tcttgtaatg cgagatggcg tgttaagcga ggggagctta
     5941 tgagtacgcc gtttttcatt agctggcgtt accaacgggg caaacagaaa aacaaactgg
     6001 tttcactgat tgctctcttt tccaacatcg gtattgccct tggggttgcg gtattaatta
     6061 tcgggctaag tgcaatgaac ggctttgagc gagagctgaa taatcgtgtg ctttcggttg
     6121 tgccacacgc tgaactggtt tcgtttcaag gcaatcagcc tcaaccaatt tttgatagca
     6181 aaaaattaga ggcattgata aaaaaatcgc aaaatgtgac cgctagttcg ccttttgtca
     6241 gctttaccgc cttaattgaa aatggggctc agcttaaaat cgcccaggtg cgaggggttg
     6301 atcctaaaaa gcaagatcag gccagccaat taagccaatt tattccaccc gagcaatggc
     6361 aagcgttcaa tcagcaattt caagccgatg aagatggctt gattttagga gccggtattg
     6421 ccaaagcgtt agaagttgag gcaggagacg aagttacgct tttaattcct cagccaacag
     6481 aagacggcaa attagcccag cccttgcgtt ttaacctaaa cgtaaccggc attttgcggc
     6541 tagatgggca gctggatcac agttatgcct taattccact gaataaagct caagagctga
     6601 tggaatacca agcgaatgaa gtgtcagggc ttgaaatcag ccttgccaat ccgtttgatg
     6661 tacaacagct tgaaatgcca caacttaacg gctataccca accgctttat ttgaatacgt
     6721 ggattgataa attcggttat atgtataacg atattcaact gattcgcacc gtgatgtaca
     6781 ttgcaatggt tctcgtgatt ggcgttgcct gttttaatat tatttccacc ttgattatgg
     6841 cagtgaaaga caaacaaggc gatatcgcga ttttacggac actgggggca aataacggtt
     6901 ttatccgccg cattttctta tggtatggct taatttcagg tatgaaaggg gcgttattcg
     6961 ggctgatttt aggtgtaatt ttatcgctaa atttaaccgc tattatcaaa gcgattgaag
     7021 cattctttga ggtgaaattg ctttcagacg gggtttattt tgttgatttc ttaccaagtg
     7081 aattacattg gcaagatgtc gtctatgtat tggcagccac gattatccta agcctttttg
     7141 ccagcttata ccctgccaac cgagccgcta aattagaacc ggcaaaagtg ttaagtgggc
     7201 attaatcatt ttcctattct aataaaaaag cagctacccc tcgattatgt cagaaaggta
     7261 gctgctttta tttatgttat tactcttcgc ctaataattt caactcacga gccttaattt
     7321 ggttttttag aatttcaact aagtctgaaa cgaggtaagt acctaagtct gcacctttac
     7381 gggtacgcac agacacttta ccttcggcga tttctttatc accgcaaacc aacatataag
     7441 gcacacggcg taaggtgtgc tcacgcactt tgaagccgac tttttcgttg cgtaagtctg
     7501 ctttcacacg aatgcctgca tcagaaagct gtttcaccac ttgttgcaca taatctgctt
     7561 ggctgtcggt aatgttcatt accactgctt gggttggggc aagccaagtt gggaagaaac
     7621 cggcatattc ttcggtgata atcccgatga aacgttcgat cgagcctaaa atcgcacggt
     7681 gaatcattac cggtgtgcgg cgaccattat cttctgctac ataagaggct gctaaacgac
     7741 ccggtagagc gaagtcaagt tgcactgtgc cacattgcca ttcacgtcct aagcaatcac
     7801 gcaatgcaaa ctcaattttc ggcccgtaga atgcaccttc gccttcttga atttcatatt
     7861 caagtccgtt gttgcgtaag gcgttggcta agcctttttc tgctctgtcc cacattgcat
     7921 catcaccgat acggttttcc ggacgggttg aaagttttac tgcaatgtta gtaaaaccga
     7981 aggtgctgta aatgtcgtac accattttga tacagctgat tacttctgac tcgatttgtt
     8041 cttcagtaca gaaaatatgg gcatcatctt gggtaaaacc acgcacacgc attaagccgt
     8101 gtaatgaacc ggacggctcg ttacggtgac acgaaccaaa ttccgccata cggatcggta
     8161 aatcacggta agatttcaag ccttgattaa agatttgaac gtgacccggg cagttcatcg
     8221 gcttaattgc atattcacgg ttttccgatt gggtagtgaa cattaaatct gcgtagtttt
     8281 gccagtgtcc ggttttttcc caaagcacac gatccatcat aaacggacct tttacttctt
     8341 ggtaatcgta ctctttcaat ttggtacgca caaaagtttc aagttcacgg aaaatcgtcc
     8401 agccgtcatt gtgccagaac accatacccg gtgcttcttc ttgcatatgg tataaatcta
     8461 acgctttacc gatacggcgg tggtcacgtt ttgccgcttc ttccaaacgt tgtaaatatt
     8521 cggctaattg ttttttatca gcccaagctg taccgtaaat acgttgtagc attttatttt
     8581 tgctgtcgcc acgccagtaa gcacccgcta ctttttgtaa tttgaagtgg tggcagaaac
     8641 gcatatttgg tacgtgtgga ccacggcaca tatcaatata ttcttcgtgg tgatataacg
     8701 caggcgttgc cgtacgttca atattttcat ctaaaatcgc cattttgtat ggctcaccac
     8761 gtttctcaaa ggtatctcga gcttcttgcc agcttaccgg gcgttttacc acgtcatagt
     8821 tggtttttgc cagctctaac atacgctttt caagagcgtc taaatcttct tgagtcaaag
     8881 agcggtctaa atcgatatcg tagtagaaac cgttttcgat agtcgggccg atagccattt
     8941 taacgtctgg gaataattgc ttgatggagt gacctaacaa gtgagcggtt gagtggcgaa
     9001 tgatctctaa accatcttcg tctttggcag taatgatttc aagtgtgctg tcttggctga
     9061 tgatatcaga cgcatcacgg cgttcaccgt ttacacgacc ggcaatggtg gctttcgcta
     9121 aacctgcccc gatagattgg gcaacttcca ttacagaaac tgggttgtca aatgaacgtt
     9181 gtgaaccgtc cggtaaagta ataattggca taataaatcc ttacagtggt aatccatacg
     9241 agagattact tgtgttgttt gaatgaaaaa accgcctaca agcggtcttt tttgattaaa
     9301 attttgcaat ttgcttatta tttcccttac aagtggggaa taaaagcact gaaattctag
     9361 cataaaacaa agaaaaatta aactttgctg ttttcagcgg ccccttcatc aagctcaata
     9421 ttttcatttt ctgtttgtgg atcttgttca agtatttcaa gctgagcctg gtactcttgt
     9481 accgcttctt catcaaatgg aataagtgcg tcctcaacaa cttcaatttc ttcaagtggg
     9541 cttgcggttg caattggggt agcatattgc atctctgctc gttccgcttt cggaattgat
     9601 ttggtgcgga aagcacaaat aaataaacta agtgagaaca gtccaaaaag tgcataaaag
     9661 ccatattcag cggaaaggct catcgcaaaa ccgataagcg gtggagcaac taacgccccc
     9721 acaccatagc aaaacagtaa acccctgctt acttcaaccg tgttcatatt attcggcaat
     9781 tcatcgttgg cacgggcaat gctcaaagca tataagctaa acagactaca gccaaagaaa
     9841 aaggcgataa tatactgtcc ccaggcggtc aaattttctt ggaaaattgc aaataatccg
     9901 gcaagtgcgg ttaaagtggc aatcactgaa caagctaaaa tggcgttacg tctgccaata
     9961 cgattcgata atatcgccat cggcatttgg ctgataaaac caccgatcat cgagatcatc
    10021 aaataaagcg agatttcact taatgaaaag ctaaacttca gcagaaagac tgacgccatt
    10081 gtaaaaaagc cgtttaccaa cattccgcta ataaagctgg ttgctaaggc taacggtgaa
    10141 atcgcaaata gtttaggaat actaatgcgc tctcgagccg gaatatcagg ctgaaccatt
    10201 ttagttaaag caattgggat catcgacatc acaaccaaaa tggtagataa gataaaaatg
    10261 tttcggctac taagttctaa acttaataaa cttacgccta aaataaaggc gagatagaag
    10321 ataatgttat aagtggcaag cactttgcct ctggtatcga cattggtttt ttcgcttaac
    10381 caactttcga ctaaaagcag caagctataa tgacagaatc ccaaaataat tcgtaacacg
    10441 ccccagatcc acaaagtatc aatcataata tgaccgagag cggcgatagc aaaaacagca
    10501 cagaaaacgc taaatgaacg gatatgccca acacttgata caatgcggtg agcaaaaata
    10561 gtgcttaatg ccgccccaat aaagaaagca gcgttaagta aaccgatgat gatgtccgtt
    10621 atccccattt ctgccagttt gatccctgct gaatttagaa ataaaccgta gccgaaaaac
    10681 agaaaaaaga tacctgaata aagggagtaa aatttagtgc tattcatcaa tgctccttca
    10741 aacattctgc cagtattaaa tcattgtacc gatttaatac cttttaggca aaaaagttat
    10801 tattagcgtt gagaaaataa cttttggcta ttttgattaa aaaatcaaat gaaggtgatt
    10861 ttgaaatgta gtaaaaaata gagcaatcag aattgaaaaa gggtttgccg taacaaagcc
    10921 tttagaaaga ttagagtttc gagaagaatt tgtagcttgg gctaaccaaa acacttgcta
    10981 ggagtgcttt aagcacacca cctaaaataa atggatataa gcccgcttgt aatactgtgc
    11041 cttctggtac aaagaaagtt gagccaagcc gaaagcaaag gtgatcacac ttgcaattaa
    11101 ggcgacaaat aaacttttcc aaaaagagtt taatacgcct ttatcgctat aatagcctaa
    11161 gaaataggcg gttggaatat agcctaataa gtatccgcct gttggaccaa agaaatgatg
    11221 gaaacctgaa gcaccgccgg caaagacagg taaaccaatc gccccttcaa aaagataaag
    11281 taatactgca gcagttgcgg ctttacgacc cattgcaaaa ccaaccacag ttaaagcaag
    11341 tgtttgccct gtaatgggta cagggtacat cggcacagaa atttgtgcaa aaatagcaag
    11401 cagtgttgct ccaataaaag ttttcaacca aaatgtagtt atactattgg cttctagcca
    11461 acgtttagtt tgaattaatt gcgtagtgaa cataatcctc tcctttaata tggttaaaat
    11521 gttctcaacc gattatataa gaagatgtct tttagggtaa gagtgaattt aaaatggtaa
    11581 aaccagttta tatttattgt gatgaaggta gcagtgaaat tggtgttcaa tcactgttat
    11641 tggcagtaaa acagcattta cagcgtccgg cttatctcat caatgccaaa caaattattc
    11701 aaagcaagtt ttccgatggc tgtttattaa tcatgcccgg tggagccgat ttaccttact
    11761 gcaaaaaatt aaacggagaa ggcaatcgta gaatccgcca atttattgaa caaggtggag
    11821 cttatctcgg tatctgtgcc ggagcttatt atggctgtgc tgaattgaat tttgtagggc
    11881 gtgactatag cgtaaatggt aatcgagaac tagctttatt taatggcatt gcgggcattg
    11941 cgaaaggcag tctgccgcag tttaccaacg ggcaacttta cgataaaaac attggtagca
    12001 aagcgatagt tgaagtaaca cttgcagagg gtggaaaaat gccgttttat tatcacggtg
    12061 gttgctgttt tgaaccaaat tcaacaacag tgatttacaa cccgttggct tattatcctg
    12121 atggctcagt agcaatgata gagggagagc tagggcgagg ttactatctg ttgtcgggtg
    12181 tacattttga attacaagcg gtcgtttatt ggcaaaaaat tgtaaattgc tgtgaaaatc
    12241 ttgacataaa aacacaagaa gaagcaattt gctctaattt taatgtaaat tatggctcgc
    12301 aaatttggca acatctaaag caacgactaa atcaagcgta aaaaaataac ctttcgctat
    12361 tctgccaaat ggtttctgca atcagatttg gtgattctgt tcttaattca catagactat
    12421 tgaaagtcac taaaagccgt tccggtcggt tcggctggcc ttgaaagcca aacaccggca
    12481 tatcgggcga gtcggtttcc agtagtaaac tttcaagagg tagtttgcgg atagcctcac
    12541 gggttttgtt agcacgttca taggtaatag ttccccccac accaatttta taaccgagat
    12601 cgacaaaacg ttttgcctgt tcatagctgc cggcaaagcc gtgaaccaca ccggttttgg
    12661 ttagttgggc ttttttgagg aacacaaaaa gttgatcgtg gcttttacgt gaatgaagat
    12721 taacgggtaa attaaatttt ttcgcaaggg aaagttgtgc ctctaaaaat tcacattgct
    12781 ttttccataa ttcaggggta gaaacttcac ttaccgcttt ttccaaaccg atttcggcaa
    12841 tagcggtaca ctgtggatct tgttggctta gcaaattttc caataagatt aaatcttgtt
    12901 gttggtgctg ttgaatatac agtggatgca accctaatcc atacaccaaa ttttccggtt
    12961 tttgtttggc acaagcggtc acttttgcaa aattttttgc aaatacggca acgataagaa
    13021 tgcattcaac ctgatgctgt ttggcattct caaccaattc cggaatgctt aaattcaggc
    13081 tttctgcgag atagtcgagg tgagtatgag tgtcaaaaaa tcgcataata aaaccaataa
    13141 aaacggggac tagattgtcc ccatttttag cattttacgc aagcaattag tttgttacat
    13201 aagcatcttc atcacgagcc tcagatggct tgaggaaagc aaagaagcaa ataacacaaa
    13261 ctaccgtaat cgcaaaaccg atataaactg ataattcata atctaaaccg aagccgattt
    13321 tgttgttcgc aaggtaagtt gcacacacgg tagtgataaa ccatgcagga atcgagcata
    13381 cccagtggaa ttttttatag cggtataagt aacctgcggc agtccataac ataaccattg
    13441 cagtcatttg gtttgcccaa gtgaagtaac gccataatac gctgaaatca acttttgaga
    13501 caatgaaacc aagtacgaat aatggtacgg caatatacaa acgttttact aaggtacgtt
    13561 gttctaaacc aaagatttcc gctagttgta aacgagcggc tcggaatgca gtgtcacctg
    13621 aggtgattgg taatactaca acgcctaata cggcaaaaat accaccgata aaccctaaga
    13681 agtgtaacga gctgtcatat accactttag acggtgaacc ggcagagatc gcatcttgta
    13741 aggcttgtgg gttttcatag aatgaaagac ctactgcaca ccatactaat gcaattaccc
    13801 cttcagtaat cattgcaccg tagaaaataa aacgaccttc tttctcattt tgcgcacagc
    13861 gagccattaa tggggtttgg gttgcgtgga aaccggataa tgctccgcaa gaaatagtta
    13921 agaatagtaa tggccaaatt ggaacatcac ctttcacttg gaagttttgg gtgaattttt
    13981 cccacgttaa gccttgaccg tctgcattca ctgtacggaa gaagtcgata ggatcagtcg
    14041 cacttaagtg agcgctgact agaccatata ccatacctac agacataaag agtaataatg
    14101 ctccgaagaa aggataaatt cgaccgatga ttttatcaac aggtagtaat gtagcaagaa
    14161 tatagtaagc aaaaatgatt aacgtccaca cagaaatcac ggttgcttta tccatacccc
    14221 aaacggttac gccacctgat gctacagatt ctttaattgc ttcaacatca cctaattcca
    14281 ttgcactttg ggttgcacct gcaatatcca tggtgatggt agagagtaac tgagcagggc
    14341 ttgcaacgaa aactacgcct actaataaaa gcaagatgag cgccattacg ttgatgaata
    14401 acttgactgg acgacccaag aatttccctg ccagatttgg catcgttgcg ccaccgttgc
    14461 ggatacttaa cataccacag aagtagtcgt gtactgcacc ggcaaaaata caaccaatca
    14521 caatccaaag cattgcaact ggtccgtata aggcaccaag tattggtcca aaaatagggc
    14581 cggtaccggc aatgtttaat aattgaatca gccaaatctt ggttttagac attggcatat
    14641 agtcaacacc gtcgttcatt gcataagccg gcgttgctct tttcgggtta atcacgaaga
    14701 ttttttcaat gatttttccg taagtaaagt agccaagaac aagcacggct acacagaaaa
    14761 agaaccacaa catagtagaa atcctataaa ttgagataaa tgatcatttt tagcagaact
    14821 gataaaggcg tgccattgta agtgaggagt gaggataaag taaaatgaat tgttagattt
    14881 gtgtgaataa tttactgaaa atgtgaggtt catcaaaaaa tccctttgtt ctgcgtcaat
    14941 caaagggact ttttaaagtt aaatatcgaa tttttgaatt ttcgcttcaa tgccttgggc
    15001 atctaatcca agatcggcat aagcttcagc ttgagtagat tggggaacga aaaagtcagg
    15061 aataccaagc attacaagcg gtttgatttt gccgatattt tgcaaatatt cattcacaaa
    15121 actacctgcg ccaccttgaa tagcattttc ttcaagcgta actaacaact cgtgtgaatc
    15181 cgccactttt tgaagtaatg cttcatctaa tggtttaatg aaacgcatat ctaccaacgt
    15241 gtagttatgt ttttcagcca caatctttgc ttcatcaagc aaagcaccaa aatttaaaat
    15301 cgcaactttt ttaccttcac gaataatgtt tcctttacct acttcaagtc tttgcattgg
    15361 ctcaagtttt acccctttag cattgcctcg agggtaacga atagcacttg gcgtattcat
    15421 cgtgtaagcg gtataaagca tttttcgcat ttcattttca tcgctcggtg ccataatggt
    15481 catattggga atacaacgca taaaacttaa atcaaatgca ccttggtgag tttgcccgtc
    15541 agcgccgaca attccggctc ggtcaatcgc aaaaatcacc ggcaggtttt gaatagcaac
    15601 atcgtgaatt aattggtcat aagctcgctg caagaagctg gaataaattg cgactaccgg
    15661 tttgtaacct gcgattgcta agcctgcccc gaaagtcact gcgtgttgtt cggcaatcgc
    15721 cacatcaaaa tattgttcag ggaaacgttt ggaaaattct accattcccg agccttcacg
    15781 cattgccggc gtaatgccga taattttcgg atcacgctct gccatttcac atagccaatc
    15841 gccaaaaata ttggaataag taggtgctgc ttttgatttt ggtaactcgg ctgcggtagg
    15901 gtcaaatttc ggaacgccat ggtagccaat cggatcattt tccgcaggtg tgtagccttt
    15961 gccttttttc gtgcgaatat gcagaaattg agggcctttc agctcacgca tattgctcaa
    16021 ggttttgact aactcgtcaa tattatgtcc atcaatcggg ccgatataat taaagcctaa
    16081 ctcttcaaac aaagtgcttt caggggagaa aatcacccct ttcatatgct cttcgctttt
    16141 tttcataaag tttttgatgg taggcacttt atctaaaatt ttcttactgc cgtcacgcac
    16201 tgaagtatag agcgaaccag aaaaaatgcg ggcaaggtgg ttgtttaatg ccccgacatt
    16261 ttcagagatt gacatttcat tatcatttaa gataaccaac atatcggtat gcaatgcacc
    16321 tgcgtggttt aatgcttcaa atgccattcc ggcagtgatt gcaccatcac cgattacaca
    16381 gacggtttta cggccggcat tttctttttc tgctgccacc gcaatgccaa gtccggcact
    16441 gatcgaagta gaagaatgcc caacgcttaa cacatcgtaa gggctttctt cacgccaagg
    16501 gaaggggtga ataccatctt tttggcggat agtgtgcatt tgatctcggc gcccagtaag
    16561 gattttatgt gggtaagctt gatgaccaac gtcccaaatt aattggtcga aaggcgtttg
    16621 ataaacataa tgcaaagcta ccgtaagctc tactacccct aagccagagg ctaaatgtcc
    16681 gctagtttga ctgactgatt ccaataaata ggctcgcagt tcatcaacta cggtttgaag
    16741 ctggtcttta gaaagtaaac gtaaatcttc cggtgagttg atttcgctta acagaggata
    16801 cttcttttcc ataatgtttt attacccaca accatcaaat aatagatgat attaaattaa
    16861 gctttgagtt cttcggtcaa agtaggctga atgctattta aaatttcttt aaccacacgg
    16921 ccgttaccaa caaccagatt acctgttttc aagtaatctg ttccgccaac aaagttagtc
    16981 acaattgcac cggcttcacg ggcaataagt tcaccggcgg cgaaatccca cggttttaag
    17041 ccgatttcaa agaaaccatc aacacgaccc gctgcaacat aggcaagatc taaagcggca
    17101 gaaccggtac ggcggaaatc agctactccg ttattcatta agccttcaag catatttaaa
    17161 tgtgcatcac gatgtctgat gactttgaaa ggaaaaccgg ttgcaattac agtgcctttt
    17221 aaatcacggc gttctgcatc aatgcgtaaa cggaactcgt ttaatttagc cccttcgcca
    17281 cgcaccgcag tgaaaagctc gttacggata ggatcgtaaa ctacccctac tgttgtacgt
    17341 ccgttttcac gcacggcaat cgacacagca aaatgaggta agcgttttac gaaattggtt
    17401 gtaccatcta atggatcgat cacccattgt acattttcat tgctaccgtt taacacgccg
    17461 gactcttcgg tcacgatcga gtgttcaggg taagatttac ggatcacatc aataattgcc
    17521 gcttccgctg ctttatcgat ttcagtcaca taatcattcg tatttttttg taaaacttgt
    17581 gtatcttgag gcgattgttc atagcctttg gcaataatat tgcctgcttt tcgtgccgca
    17641 cgaatagcaa tgtttaacat tgggttcata tttccaccag attttaaaga acataataaa
    17701 gcacgaatta taaagaatgt agcgaaataa agaaacaaca agcggtctaa tctgtgaaaa
    17761 attttgcaaa aaaatggctt tttctaaccg cttggagttt ggattcgtta taatacctcc
    17821 cattcaagcc acccatttag gtactaaaaa tgcaatttaa agaaaataac caacctcgtt
    17881 ttaaacacag agaagaacgc cgttcagatg agtgttcccc ccgtttttca gataaaggca
    17941 aaatgcgagg aaatgaaggt aaaagtgaca gaccgcataa gctacatttt aagcgtgacg
    18001 aggcttattc acgctctgag cagatttatc cagcagaagg caaaaaagcc agtggtgaag
    18061 gtagtgtgca aatttgggta aaaggtggga atagctcagt taaagagaaa aaaaacggcc
    18121 cgctttcacc gagagcgcct gagaaaatta agaaaaatcg cttggaagag atgaaagtct
    18181 atggcgaaaa tgcctgtatc agtttgttcc aacaacgtcc tgaatctatt gtacgtttat
    18241 gggcaacagt ggagggggca aaaaaattag gcgatttaat gagctatttg gctcagcaca
    18301 aaaaagccta tcacgttatt gaccgtgaag agatggagcg agtcaccggt actgaacatc
    18361 acggcgatat gtgcttattg gtgaaaaaaa cggcttcatt tgtgctagag ggctatttac
    18421 aagtgccgaa aaaacaagat tgcttggtac tgttagatgg tgtaaacaat gctcagaatg
    18481 tggggggaat catcagaacg tgtgcttttt atggtgtgaa aggcattatt actgaaaatg
    18541 tggatagctt aaactccagt gctgcagctc gtgtcgcaga gggtggtttg gaatttgtgc
    18601 gagcgttaga aactaaaaac aagcatattg ctttggtaca actccgccaa gccggttatc
    18661 aaattgtcca cctcacacgc cataagcaag ccccttcttt aaccaaaatt aagctggcgg
    18721 aaaaggtggt ttttgtatta agtgagattc ctgcaagtga tgtggcttac gcagaagaca
    18781 caacaataca gctttccttt aataatccgt taaatagtgg tttaaatgtg gcggtaaacg
    18841 caggtattct acttaatcaa tggtatcaaa cccacattct ttaaggaatt gaaatgaatc
    18901 agcaaaaacc gtttgaagtg attgcgattg ttggcacacc tcgccacgac agtgcatttg
    18961 aaacacatct tgccgtttat aattggttaa aagatcgtga ttatcaaatt ttagtggaaa
    19021 cagaggttgc cactcagtta cagcttaagg aaagctacag tttagatcag attgggcagc
    19081 gcgcagagtt ggtgattgtg ataggtggcg atggtaatat gcttggcatc gcccgagctt
    19141 tggctaaata ccgagtgcca ctgataggca ttaaccgtgg caatctgggt tttttaaccg
    19201 atatcgcacc tcaaacggct tttgaacagc tttatagttg cttagtcaaa aatgagtatg
    19261 tgattgaaga gcgattcctg ttagaggctt tcattgagcg caacggtaaa attattgccg
    19321 caaataatgc cttgaatgaa attgtggttc acccaaccca agtggctcga attattgaat
    19381 ttgaagttta tattgacgga aaattcgctt tttcacaacg tgcagatggc ttgattgtgg
    19441 caacgcctac aggctcaacc gcctattcac tttctgctgg tggcccgatt ttaaccccga
    19501 atatgaatgc aatggcatta gtgccgatgc accctcacac tctttcttct cgtcctttgg
    19561 tggttgatgg cgatagtcaa atttcgcttc gttttgccaa atataatacc cctgatttag
    19621 aagtgatttg tgacgggcag gtgaatatgc actttacgcc tgaagataga gtcttggtgc
    19681 gtaaaagccc ggataaatta cagctgctcc atttaaaaga ttatagctac tttactgtat
    19741 taggttctaa attaggctgg gcaagtaagt tgttttaaac acaagcggtg ttttttctga
    19801 ttaaatttgc aaatgcaata tgaattgatt tcatatacat ttcaaaaata tatcattttt
    19861 attcaataaa aatttgtggt tcaataagct atctgaaaaa taaaggggac aataaaatga
    19921 caacaaattt taaatgccaa gtgcatacta ttgaatttaa tgaagattac caaccggagc
    19981 aaagcacccg tttaaccacc aactttgcca accttgcccg tggcgaaaac cgcaaacaga
    20041 acctgcaaaa tgcgattgcg atgatcaata accgttttaa cgatttagcg aactgggata
    20101 acccgaatgc ggatcgttat tcggtgaaat tggatattgt ctcactggat attgatgtgg
    20161 aaggcaaagg cgagtttttc cctgcgattg agtggctgaa aacctatgtt atcgactaca
    20221 aaaccggcaa aaccattgat ggcattatcg gtaataactt ctcttctttt gtgcgtgatt
    20281 acgatttcag cgtattgttg ttagatcaca ataaagacaa accgcaattt agcgtgccgg
    20341 aaggctatgg cgagttacac ggcaagctgt ttaagcattt attggcatcg cctgaatata
    20401 ccgcaaaata taaaaaacca ccggtgatct gtttaagcgt ggcaaccacc cgtacctaca
    20461 caagaaccac taacgttcac ccaattttag gtgtggaata tctgcaagat agttattcat
    20521 taactgatgc ctattttgcg aaaatgggct taaaagtacg ttactttatg ccgccaaaat
    20581 ccgttgcacc ctatgcgttc tactttgatg agaatgcaga tttactcaat gattacacta
    20641 acttagagct aatcagcacg attgccacaa tggaagcgtt ccaaaaaatt taccgtccgg
    20701 aaatttacaa tgccaattcg gtcgcagggc aggtctataa aggcagcctg acttaccaag
    20761 attattccgt caccaaagtg gaatatgacc gtgaagaacg cacccagttg gcgatcaaac
    20821 agggtaaata caccgaagag cattttatta aacgttacca agcgatttta gaggcttggg
    20881 cgacggagga ataaacgtag ggtgggcgta agcccaccat aaaatgagat ataaccaatg
    20941 gtgggcttac gcccacccta ctttttatag gaaaattcaa aatgagcaac attcttctcc
    21001 caacctctac cgccggcagc ctaccaaaac cttcgtggct tgccgagccg gaaaaactgt
    21061 ggtcaccttg gaaatttgaa ggcgaggaac tacttcaagc caaacgtgat gccctccttg
    21121 tttcccttgc cgaacaaatt gcggcaggga ttgatattgt tagtgatggc gaacagaccc
    21181 gccagcactt tgtgaccacc tttatcgagc atttggaagg ggtggatttt agcaagcgtg
    21241 aaatcgtgcg cattcgtaac cgttacgatg ccagcgtgcc gagcgtggtg ggggcagttt
    21301 cccgcccgaa atcggtgttt gtggacgatg ccaaattctt gcgtgcgcat accgacaaac
    21361 caatcaaatg ggcattaccc ggcccgatga caatgatcga cactctctat gacggtcatt
    21421 acaaaagccg tgaaaaattg gcgtgggaat ttgccaaaat tctcaacgaa gaagccaaag
    21481 agttggaagc ggcaggggtg gatattattc aatttgacga accggcattt aacgtcttct
    21541 tcgatgagct gaacgactgg ggcgtggcgg cgttagagcg tgcggcggaa ggcttaaaat
    21601 gcgaaacggc ggtgcatatc tgctacggct acggcattaa agccaatacc gactggaaac
    21661 agaccctcgg caacgaatgg cgtcaatacg aagagagttt cccgaaactg caacaatcaa
    21721 aaatcgacat tatctcgtta gagtgccaaa actcccgtgt gccaatggac ttaatcgaat
    21781 tagtgcgtgg caaaaaagta atgctgggag cgattgatgt ggctaccaac attatcgaaa
    21841 caccggaaca agtggcagat acgttacgca aagcattaca atttgtcgat gcggataaac
    21901 tttatccaag caccaactgc ggaatggcac cactttcacg ccaagtcgca caaggtaaat
    21961 tacaggcact cagccaaggg gcagcgatat tgcgtgcgga attcgcaaaa taattttgcg
    22021 atctgcatcg aaaatatcaa ctttgctttt tgctcgtttc cagattttct tccaaaataa
    22081 caggaaatga cggaggcact atgctaaatc tatttaaaaa gccaattaag aaaagctcct
    22141 ttgaggcttg ggcaaaacta atggacgatg tggcaaaagt tgcaatttta gcaattcctg
    22201 ttattctcta tggagaatat tcactgctaa tgaaatttac acactcaatt accttatttg
    22261 cagtagttta ttttttgtta gcaacggcaa gattgtttcg agaaacagca gaggagatgt
    22321 aaatggacgg attgacaatc ggattatttc ttttgcttgc attttcattt gctgcatacc
    22381 aatgggcaaa gcatttaaaa gatcataatc attaattcaa tgaataatac taagcggtca
    22441 tatttggtaa attttttaca aaatgtgacc gcttgttttt ctttcactcg aagttaattt
    22501 ttatataaat aatactatct atgaaactaa aaaatgcgta aaataacgtg aaatcaactt
    22561 acgcaaacgt ttacttaagc ttattaggag tccaaaaatg ttaaaacgtg atatgaatat
    22621 cgctgattac gatgcagtat tatggcaagc cattcaagat gaagatcgcc gtcaagaaga
    22681 acatattgaa ttaattgcat ctgaaaacta tgcaagccca cgtgtaatgc aggctcaagg
    22741 ctcacaatta accaataaat atgcagaagg ttatccgggt aaacgttact atgggggttg
    22801 tgagtatgtg gatattgtag aacaacttgc gattgaccgt gcgaaagcat tgttcggggc
    22861 agattatgcc aacgttcaac cgcattcagg ctcacaagcg aatgcagccg tatatatggc
    22921 gttgcttaat ccgggtgaca ctattttagg tatgagttta gcgcacggcg ggcatttaac
    22981 ccacggtgct tcagttagct tctctggtaa aatttataaa gcagaacaat acggcattac
    23041 tgatgaaggc ttaattgatt atgaagcatt acgcaaacaa gcccaagaag tgaaaccgaa
    23101 aatgattgtt gctggtttct ctgcttattc tcaagttatg gattgggcaa aaatgcgtga
    23161 gattgccgat gaagttgggg catatttatt tgtggatatg gctcacgttg caggcttaat
    23221 tgcggcggga gtttatccaa atccgcttcc tcacgctcac gtcgtgacga caacaaccca
    23281 taaaacctta gccggccctc gaggtggttt gattttatct gcatctggcg atgaagaaat
    23341 gtataagaaa ctgcaatctg ccgtattccc tgctggtcaa ggtggaccat tgatgcacgt
    23401 tattgcggca aaagcggttt gttttaaaga agctttagag ccggaattta aggcatatca
    23461 gcaacaagtt gtaaaaaatg caaaagcaat ggttgaggta tttaagcaac gtggttttga
    23521 tgtggtttca aacggtacgg aaaaccattt attccttgtt agctttgtaa aacaaggttt
    23581 aaccggcaaa gcggcagatg ctgcattagg agctgcgaac attaccgtga ataaaaactc
    23641 ggtgccgaac gaccctcaaa aaccattcgt gacttcaggt attcgtgtgg gtacgccttc
    23701 tgtgacccgc cgtggtttta aagaagcaga ggtgacagca ttagccggct ggatgtgcga
    23761 tgtgctagat agcattggta aggataatca cgaacaggtg attgcagaga ctaaagcgaa
    23821 agttttagac atttgtaaac gtttaccagt gtacgcataa tctcaacttt acactttttc
    23881 aagcggtaat attttttaga aatattaccg ctttttgttt tatcaatcat tttctttatc
    23941 tgttttctga aaatggattg atttttcttt ttttacataa cataatgata ataattctca
    24001 ttaatttatt ttttgttatg ttacctcgta tttcctcttt tttagctagc ctttttatgg
    24061 ctttttttct tttaggctgc tcggtttcaa cgcaatccct taatgaacaa aacgtggact
    24121 ctatcggcca aattattgat ctgaatacca atcaaacgat ttcatttact gaactacttt
    24181 cccgtctatc ttctcaagat tacgttttag ttggtgagga gcatactcag ttaattcacc
    24241 accaaattga attgtattta tttaatcaac ttacgaagaa agccaagtta catttaattg
    24301 cgttggagat gttaaatgtg gatcagcagc ctgcgattga tcgcattcag tttaaccgac
    24361 cggttaattt atcagccacg gatttaagag aggcaattca atggcaaaaa tgggattgga
    24421 agatgtatca agatttagtg gtagagagct taggttcaaa tagtcgtgtt atagccacta
    24481 acttaacaga taaagaggtt gaaattttat taaatggggc ggagccatta aaaggttctg
    24541 tatccacttc ctctgaagtt aagcaaaaga tcgcacaact gttgctgtca atgaatcacg
    24601 gaatgcctta cccgatggaa aatatggtgg cagtacaaca attccgtgat cgcagaatgg
    24661 cagaaaaatt agtaaaaaat gcgttatcga ctagcttgct gattgcaggt aaccaccacg
    24721 ttcgcaaaga tcttggcgtt ccgttgcata ttgcggaata tgaccgaaca aaaaaagtag
    24781 cggtgctaat gcttaaaaca gagagagaag aaattacttc ttcacaggca gattatcttt
    24841 gggtcactca ataaggagaa ttatgaaatt taatataatc acacgcattt tgtttccggt
    24901 tttgtgtatg ggaggatcgc aaactgcatt ggcagaggaa aaggcgaaaa atattgcgga
    24961 gcttgatact gtgacggttt atggcactgt ggaaaaccct aattttgaga atttcagtaa
    25021 agccggctcg gtgagttctc gagcaatgaa tgtgaatgca atgcaaagtt tagatagtat
    25081 tgtccgttct gtcgcaggtg gctataccca aattgacccg gggcaagggg gcgtgagtgt
    25141 gaatattcgt aatatgagtg gtcttggtcg ggtaaatacc ttagttgatg gcgtgccaca
    25201 aacacagctt ggtacatcag caaacggagg tggtaagttc cacactgatg gtaacgggcc
    25261 aatgagccaa ttcagcactt taattgatca aaatttttta acccgagttg atattgcgaa
    25321 aggctacaac aatggtgcag ccggattgaa tgctttagcc ggtagtgcta attttaaaac
    25381 gattgatgtc gaagatattc tactagaaca acataaagtc ggcgtattaa gccgttttaa
    25441 ttatggcaat aatgatctgg gaaaaaacgg aatgcttgca ctagccggaa aagttgatgt
    25501 gctggaaagt ggttctcttg gcagtttatt ggcttttagc aaaagtagta tcagtcaaaa
    25561 ttatcgccga ggtaatggca caatggcaac ggattctgct tatatgcaag ggttaaaaaa
    25621 tcaccctgaa tcttatatgg gaaaaattgc ctttaagcca aatcaagatt cagagtttaa
    25681 attgtccgga cgtcaatata aaaatagctt agtggggcgt aatattgata gtgtgaccta
    25741 ttccttagaa tccagttacc agcctcaatc tgattggatt gatctgaaat tcctaacagc
    25801 agtaacagaa actaagcaag atttccacga tgatgcaaaa ctatggacat tagaagatgc
    25861 ctcaaccaaa aacaaaatgt ggatgtttga tttgaataac accagccgtt ttgagtcagg
    25921 gaaataaata ttcccgtgat ttaccggaaa gtaagaataa tgatggagcg attagcaatg
    25981 ccgcttttgg gccggcaggt aagcaaaata ttgattccct ttacctagac accgaatgga
    26041 aatacggcat tgtcacttta aattcaagtc ttcactattc acgctatcag ttaaaaggat
    26101 ataagccaga atgcgatagc gatgatatgg attattgttt cccttctttt gggtttgatg
    26161 ttaataaaaa acattataag ttgaatcctt ctgccacttt agcatttcag gttgctgatt
    26221 ggtttcaacc ttttgtcagt tacaaacaaa cctcccgttc gcctaatgtg caagaaatgt
    26281 ttaataccag tcgaaatggc ttgagtgtga acccgttttt gaaaccagaa agtgcgaaaa
    26341 cctatgagat tgggtttaat attcatcaag ataatgtatt actcaataat gatatcttgg
    26401 ggctaaaagc ggtatatttt aactcacgca ttaaagacta tttgtataac ctctcgttgt
    26461 atggttgtgg gccaacagta tgtcgaaatt caagtgatgc taccaatgct atacagttcc
    26521 aaatttatgt gaatcaccct gaaaaggtta aaaatcgagg ttgggaagtt gagctggctt
    26581 acgattccga tgcttttttt gtcaatggta gttatacccg aactgaaagc acagcaccca
    26641 cttcaaaagg tgcgactatt ctttatggat ttggcactga agcttatacc cagctaccaa
    26701 aagattatgc gactttggag ctaggggcta aattgctgga taaaaaatta acactgtcta
    26761 gcatttttaa atatacaggc aaagcgaaac gtgtcggtat tgatttagac gaagatggca
    26821 acattattca cgagcagtta ccgaatattc cggtgattat cgatttatat gcaaattaca
    26881 aagtgaataa acatttaacc ttaaaagccg gggtacaaaa tgtgatgaac cgaaattatc
    26941 ttgatgcctt aaatgcgtat aactcttcca ccgcagaaga gtatgactat gatacagaca
    27001 cctatcgttt cacaaatagt gccagaggtc gaacttacac actaggggca gaggtgcgtt
    27061 tctagcttga aagtggctta ttttaaccaa tacgcccttt ttctttcctg tactgatgtt
    27121 gagattcaag gcataatatc cagaacgatg aatattcagc cggtgtgtaa tatgaaaaaa
    27181 tttgtggttt taatttcagg gaatggttct aacctacaag caatgattga tgcgcaaaaa
    27241 tctgcggata caagcggtca aatttgcggt gtaatttgca ataaggcaga tgcctatggg
    27301 ctgattcgag ctaaacaggc gggaatcccg acatttgtat tttctcgtaa agattaccaa
    27361 agcaatgtgg aaatggatct tgcgattgcc gaacaaattg agcagttagg agctgagtta
    27421 attgtattag ccggctatat gaaaatttta acgcctgaat ttacgcaaca ttttgctggc
    27481 aaaatactca atattcaccc ttccttatta cctaaatacc cagggctaaa cacttatcaa
    27541 agagcgatag aggctgggga aagtgaacac ggcacgacta ttcatttcgt gaatgaagaa
    27601 gtggatgctg gtgcggtggt attacaagct aaagtgccga tttatcctga agatgagatt
    27661 gaagatgtaa tggctcgagt ggttgagcaa gaacatcgat attatccgtt ggtgattgag
    27721 tggttctgtt cgggtagatt agtttctcag cacggcaaag cgtatttaga cggtaaacta
    27781 ctgcctgctt gtggatatgc agaagattaa acgatagggt gcatcgcacc ctaactttca
    27841 gctaatgcag ggcaaagata atattgcccg ctgtgagggc aatagcgaca gcccattttc
    27901 atttcataca gctcatctaa taaacaactt tctgcaatgg ctttagcgga catttcagca
    27961 aatttttctc cattttttag cattaagata tgatcggctt gatttattgc caatgcagga
    28021 tcgtgcaaaa tcgcaatgat agttaagcct tgttgtttca gcttttgtag taaggaaaaa
    28081 agctgatatt ggtgatgaat atccaaatgg ttggtgggtt catcaagcaa aagccagctt
    28141 ccgcttaaat cggcattcgg ttcaggaacg agttgagcca gcactcgagc aatatgcgct
    28201 cgatgttgtt ctccaccgga aagttgtatg ctacttcttt cttttaatgc ggttaaagac
    28261 attgtttcca tagcccaagc ggttattttt tcattaaatt ttgcaaattc actttggcga
    28321 tatggctctc ttccgagttg taccaattct tctactttta agggaaaggc aatttggctc
    28381 tgttggctga gcattgcccg tttttgagcc agagcatatc cgtttaagtc tgttaagcgt
    28441 tgatgttgat aaaatacggc actgttagtt tgtgcattat taccgcttaa ggctttgagc
    28501 aaggttgttt tgccggctcc gtttggaccg atgatggcgg taaattttcc ttgttcaaag
    28561 gcaatttctt gaatctccag caactttttt tgttgatgaa cgatgcttaa attttggcaa
    28621 gttaataaat tgctcattag atatgtttcc cacttttcca taccattact gcaaggaatg
    28681 gcgcaccaaa taaggcggta aaaataccaa tcgggatttc tgccggggcg gctagggttc
    28741 tggcaagagt atctgcaatc attaataaga ttgcaccgca aaccaaacta ttgagtaata
    28801 aatggcggtg gttactgcct cccagtaaac gcattaaatg tggaataacc agcccgacaa
    28861 agccgatagc cccaacacag gcaacgcttg tgccggttaa taaggcaacg taaaacacaa
    28921 gacgacgttt gacttttgca atgtcaaaac caatgtattg tgcatcttct tcacctaatg
    28981 ttaaggcgtt taacgcacgg tgttcccgcc aaataagtgg gctacaaatg aagacaaccg
    29041 cagccatcat tgccaccatt tgccaattca tacctgctaa agatcccata ctccaaaagg
    29101 ttaaactacg aagttggtta tcatcggcaa cataaatcag tatgccggtt aaagcgccac
    29161 taaatgcagc tagagcaata ccaattaata gcataatggc gatatgtagt tgcccgttac
    29221 gttgagaaag taaatagagc ataaaagtca ccagccagcc ccctaaaaag gcggcaatag
    29281 gtagagcata atagctgatt gattccggca gtagtggctg aatcaccaca atatataatg
    29341 ccgcagccaa tgcagcacct gaagagacac caataatccc cggatctact aacggattgc
    29401 gaaacagccc ttgcattgtt gctccgctaa tagcgagggc tgccccgatg aataatgccc
    29461 ctagtaatcg aggcaggcgg atttgccata aaatataggc tgcactttcg cattcagcgt
    29521 tgttgcagtg ccaagcggat aggggtaatg acatcgcccc taaatgggta caaatcacta
    29581 agctgataat taaagtgaaa attaaggtta aatgcagttt caaagcgtat ccgttatttt
    29641 aaacaaggtt gaatagtggt gagaatttgg tgtgcatatt gagcagtgta aggcccaaag
    29701 cccaaggcat ctaaaatatt gattgcaaaa acacagcctt ttttgcccgc ttgtgtattt
    29761 gtgagttggg cgtattgtgg gctggattct gctaatttac tgatcgttgc agattctttt
    29821 gcctgattac gggaggctaa taaaataaca tcggcattgc ttgcagctaa agcctcattg
    29881 gcgagtggct tattgccctc agcattgaaa ctattgttta gatttaacaa ggttaagaaa
    29941 tgatcaccca cactcttttt ccctagccca aagatacctt gcgatgcagt gtcaatcagc
    30001 actaagactt ctttgtcagt agaatgttgg ctacgaatgt cggctaattt tttttcatct
    30061 gccagaatgg tttctgttaa ttgttttgcc tctgattctg caccaatcgc cttggcaatt
    30121 tgctgaatat cctcacgaat ccctgctaag ctcggtttct ctcctaagtg aagtaatgga
    30181 ataccgctgg ctttaatttg ctcaataact gcgttagggc cggcatcagg ggctaaaata
    30241 atcaaatctg gggttaaaga gagaatacct tcagcagaaa gctggcgacg ataaccgatt
    30301 ttaggttttt tctccattat cgtttgaggt ttaactgaag tggtatccac accgactaac
    30361 ttatcagctt ttcctagtgc tgcgacaatt tcggaagcat agcccgcagt tgaaacaatt
    30421 ttttctgccg cctttgtggt atttaaacac attgataggg caatgaaaga aaaaagtaag
    30481 gttctcattt tatactccat ttgattttta tctaaactta aataataata attattattt
    30541 caattttcaa ttaaaatgat atagtgttaa cattaaacgg attaaactaa ctagaggatc
    30601 taaaatatgc aaataaagca aactgtatta gcaatagcga ttactccctt tatttctcaa
    30661 ctctccttag ctcaagaaac aaagattagt agcattgaac tagatactat tgaagtaaat
    30721 gagcagcagg agaacctact taaacagcaa gcggtgatga gcaatgaaga tttagtacgt
    30781 tatagtactg atatgggcgt tccgcaaaca ggccgctttg gcccacaagg gtttaatatc
    30841 cgtggtgttg aaggtaatca agtggcagta acagttgatg gcatatcgca agcagcatca
    30901 aataactatg ccacctttag tcgctatagt tactacaata aatctcgccc tgaaatcgat
    30961 actgaattaa tgagcgatgt aaccattgaa aaaggctcaa gcacaaaagt aggcaatggg
    31021 gcattaggcg gctctgtgaa ctataaaact aaaaccgtaa gtgatatttt aatgaaaggt
    31081 cgccaatttg gtgggatgtt gaaatatacc tataacggtc aaaataaaga gaatattgag
    31141 acggcaggta ttgctgcgga tggtcaatat gcggatgctt tggttatgta tagccaccgt
    31201 caaggacacg aaacacaaac aacgtctaaa ggtccggata ttatgggaag tggtcgtggt
    31261 ttaccaaatc cttacaaaaa taatcaatac agctacttgg caaaattagg gctaaaatgg
    31321 aatgatgaaa atcgccttga attaaaaact tctaagcaac gcagtaaaaa cgccggtcaa
    31381 gagctttctt attctaccgt cacattacgt gattttttgg atgtgcagga aattgaaact
    31441 tatggcgtta cttatttata cactccaaaa aacagtattc ttgaaaatat taaagttgcg
    31501 gtaaccaaac aggatactga aatttcaggt attaacgatc aaatcactat tgcccgtggt
    31561 acaaaaacag ataataccaa acgggctttt aatactaaaa atgttgaagg tagcttaggt
    31621 gttacattca agcctgttga tctaggtaat accgaacata aattgtcaac ggaattaggc
    31681 tatggtgtat ctgatttcag ttttgatatg caaacctata cagcaggtat tacgccaacc
    31741 gatcaaaata tgcagtctcc ggcaaaaacc aagtctttcc atattttgat gggagactct
    31801 attttactga cacaaaatct atctgctcat ttaaatgctc gatatgagca gtcgaaatta
    31861 cattctgatg ataatagttt gtcagataaa acctttaaca attgggcggg agatattggt
    31921 ttaaattatc agctctctcc tgtatggcaa attggctata aactcagccg tggttttaga
    31981 acacctaccg caagtgaaat gttctttaac cgtgaagttc aagggcgtgg agcaagccaa
    32041 actttcttag caaatactaa cttaaaaccg gaaacaagct taggtaatga aatttcactg
    32101 gtaggtaatg gttcattagg tagcttgagc gtagccgctt accataccca ctatagaaat
    32161 ctgattgatc ttgccactat tggtaacaat atttaccaat cgcaaaatgt taaccgagct
    32221 aaaatcaaag gtgttgatat taacggaact ttagacttaa acacagcgtg gaatgcaatt
    32281 ccacaaggct ttgagcttaa tggtggattt ggttatgctc gtggcaaacg taatgatggt
    32341 accgacttac tcacggttca accgttaaaa gcattgttcg gcataggtta tcgagctgtg
    32401 aacaatgact gggcgataca cctaaacggc acatacacac aaggcaaaaa agcaaaatat
    32461 gcacaacagt atgctatttt agccaatact gggtatttaa gttacgataa atcattaacc
    32521 acttacccat acttaagtaa ttcagccacc gtatttgact tagttgcaca caaaaagttt
    32581 ggagaaagag cgattgttaa agttggggtt tataatctct ttaataaaaa atattggact
    32641 tgggatagtt taagaactat tggtataact agtcctggag ttgccaacag tataactggc
    32701 gaaggcttaa atcgttacct tgctccagag cgctatgtaa tggcatcagt ggagtttaaa
    32761 ttttagagat aagcattaaa tgtaagagtt aatttttacg tacttatttc tttatagtaa
    32821 taaacaagcg gttaattttg gcccattttt tgtaaaaaat taaacaaatt taaccgcttg
    32881 tttctggata gtagataaaa acaaaatgct ttcctatctg caataaacag ctattaaaaa
    32941 gccacttatc agagcggact cattttactt tttatctatt tttgaggtgt gcaaccttta
    33001 tataaaattt cacttgcggg gctttggata tttactgatg ctttacggtg gttggtaaat
    33061 tccattggat caccgtaaag gctgaaattg ttttcgtcac caaagttagt gccggttgca
    33121 tctgtcgtgt ataggttgat cggcataaaa cgttttttac cgcttaattt tgcctcagca
    33181 taggttggaa tgccttgttt attgaagccg tatttcacgc ttaatttttt gccgttttgg
    33241 cagctatact taacagttga ggtttttacg gtgctttcgt gggcttctct tgcatcactt
    33301 tgttcacctg ctgcatgggc taaattgctt acaatcatgg cagttgttgc gaatatcatc
    33361 aattttttca tatattttcc tttaaataag cgttatctta gttcagataa cgtattgttt
    33421 agaaagtgag ttttatataa agttccatat tttttcaaaa aattgaaata aaatatcaaa
    33481 attacaatgt tttgctagca taaaatgaca aggtcttgtt ttttggtaga ataagacctt
    33541 gtggaagggg ttacaaatta gaggctaaaa tcaaccgctt ggtgtattct tgttgtggat
    33601 tttcaaaaat ttgagtgaca tcaccgcttt ctacaatctc accttggctc attacaatca
    33661 ctcggtcgct aagtgccttg atgaccgcca aatcgtggct gatgaaaata taacttaagc
    33721 cgtatttttt ctgtaagcgg ttaagcaatt caattacagt gatctgagta gagcggtcaa
    33781 gtgctgaggt tggctcatca agcaatacaa atttcggctc taaaatgatt gcccttgcaa
    33841 tcgcaatccg ctggcgttgt ccgcccgaaa attcgtgcgg atagcggtta atcattgcag
    33901 ggttgagatt aacctcttcc aacattttca ttactttttc ccgccgttcg gttttgctca
    33961 tttgagggca atgtacggtt aagccctcag caataatttc cccaactgtt aagcgaggag
    34021 aaagtgagtt gaacgggtct tggaacacca tttgcatatc ttttttcagg gcttgacgtt
    34081 cggctttatt cagattagcc agtgtcttac ctgcaaatgt aatattgccg cgataatcta
    34141 aaatctgcat aatggcacgc ccaagggtag atttcccgga gccggattcg cctacaatgc
    34201 cgagcgtttc gccggttttc aagtgcaatg aaatatcttt taacgcatta aacacctttt
    34261 tcggcttacc gaatagcgag cgttttaaaa tataatctac cttaatatgc tcaccctgaa
    34321 gcaaggttgg tgcatttggc ggtaattccc cttttaaatt agttggaatc ggggtaagta
    34381 gctccaccgt ataaggatgt tgcggattgg tgaacacagt ttccgtttcg cctcgctcaa
    34441 taatttcgcc gttttgcatt acgcagacta agtcactgta tttatgcacc aagcgtaaat
    34501 cgtgggaaat taagataatc gccattccca tatcacgctg taagtcgtgc attaaatcca
    34561 aaatttccgc ttgggttgtg acatccaggg cggtggtcgg ctcatcggca atcaataaat
    34621 cgggtttgtt gataattgcc attgcaatca taattcgttg tagctgaccg ccggaaaact
    34681 cgtgcggata gcaaatcatt ttcttttccg catcgggaat ttttactttt tgcaaagttt
    34741 ccaacaccat tttttccgct tcggcattgc tgatttgcgg attatgggtt tgaaccgtct
    34801 cagcaacctg cttgccaatc ggcatataag gattgagtga ggtcattggc tcttggaaaa
    34861 tcataccgat gcgatcacct cgaactgttt gcattgcttt ttcagataga gtaagcaagt
    34921 tttgttcttc aaaaatgatg cttgagcgtt caccgaatga gacgatattt ttaggcaata
    34981 actgcataat tgccattgaa gtaacggatt tacccgaacc cgattccccc acaatcgcaa
    35041 gggtttgccc tttttcaatc gagaacgaga cattacgcac tgcgtgaact aattcttcgt
    35101 ccgtttttaa ataaacatcg agattattta ctgctaataa ttccattcta aacctctatt
    35161 tatcttttgg atcgagggca tcacgcaagc catcaccaat aaaattaaaa caaaacagtg
    35221 ttaaacataa gaaaaaggca gggaaagcca gtagccaagg cgaggtttcc atttgtgccg
    35281 ctccgtcgct taataatgcc ccccaactgc tcatcggctc ttgtgtacca agccctaaga
    35341 aacttaagaa cgattcaaac aaaatcagag atggtacttc aagggaggca taaaccacca
    35401 ctaagcctaa aacgttaggc acaatgtgtc gccaaataat ttgacggcgg gaaacgccac
    35461 acacaatcgc tgcttccaca aactctttat ttttaagcga aagagtttga ccacgtacaa
    35521 tacgggcaag gttcagccac gctaccatac cgattgcaat gaaaatcagg aaaatattct
    35581 gcccgaagaa cgtaaccagc aaaattacga agaacataaa tgggaatgag cttaaaattt
    35641 ccagaaaacg catcatcacc atatcgactt taccgccgaa ataaccggaa attgctccat
    35701 agattgtacc gataagcacc gcaattaatg caccggcaat ccctaccatt aacgaaatgc
    35761 gtccaccgat tgcaactcga accagcaaat cacgccctga agaatcagta ccgaaatagt
    35821 gttgagattc aaaatccgga gcaatcccca tcatattcca atcggtatct tcatagctaa
    35881 acggcattag cattggggca aaggtaataa aaagaataat acaacaaaga ataatcaaac
    35941 ttgccacagc cgccttattt cggaaaaaac ggcggcgtgc atcttgccat aaacttcgtc
    36001 cttgaatggt tgaggtaacc tcaacaagcg gttgattttt tgaagaattt tgcattttcc
    36061 gctttactcc tatgaataac gaattttcgg gtcgatgacc gcatataaaa tatcaacaat
    36121 cgcattaaat aaaatggtga gcgtacctac caaaatggtt aggcttaata ctaatgaata
    36181 gtcacgattt aatgctccgt ttacgaacaa ctgcccgatt cccggtaagc caaacacgct
    36241 ttcaattacc atcgagccgg taataatgcc aacaaaagcc gggcctaaat aagtgatcac
    36301 aggcaacaat gccggacgca aagcgtgttt gaaaataatt ttacgcattg gcaagccttt
    36361 tgccttagcg gtgcgaataa aattagagtg caacacctca atcattgaac cacgagtaat
    36421 acgggcaatg ccggcaacat agctaatggt taaagagaga acaggtaaaa ccatatagta
    36481 gagctgacca ccgttccaac caccggcagg caaccatttg agataaatcg caaacatgag
    36541 taccaacagc ggagcaaaga caaagctcgg cataataata cccgtcattg aaaagcccat
    36601 cactaaataa tcccatttac tattttgctt aagtgcagcg atagttcctg cggttaaacc
    36661 gataagcacc gcaaaaataa aggcagtaat gcccagtttt atcgaaacag gaaacgcaga
    36721 agcaatcaga ttatttaccg attgatcttt atatttaaaa gatggaccga aatcgccttt
    36781 tgacagattt tccatataaa gaaaatactg cttatacagc ggttcattca ggtgatattt
    36841 tgcctcgata tttgccatta ctttcggcgg ataggctttc tcactggtaa atgggctacc
    36901 cggggcaagc cgcatcagga aaaaggaaaa ggtaatcaga attagtaggg ttggaatcgc
    36961 ctcaagaaga cgtttaaaaa taaacttcag cataagcacc actcttttta gttatattgg
    37021 taggcaatta atagcgtaaa ttaacggctt tgtaaagata ttga
//
LOCUS       DANLZD010000003        33832 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.003, whole genome shotgun sequence.
ACCESSION   DANLZD010000003 DANLZD010000000
VERSION     DANLZD010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 33832)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33832)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33832
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.003"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(35..2086)
                     /locus_tag="PXE26_000083"
     CDS             complement(35..2086)
                     /locus_tag="PXE26_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HDL5592713.1"
                     /translation="MKLFICEKPSQARDLASVLGATSKGDGLLATNDKSIIVTWGFGH
                     LVEQYQPEDYDEVWKRWAFETLPIIPAQWKMAPKKESKKQYNVVIGLIKKASLVVIAT
                     DADREGEMIARELLDLAGYRGQIQRCWLSALDDASIRKALQTLKSGKETEALYYAGMG
                     RSRSDWLIGMNFSRLFTLMAQAKGYSGKPLSVGRVQSPTLALVVNRDREIANFVPKAH
                     YSLAVQLATASDETFVAGLSIPEQYLDESGLCLDSRVIQQAEAQIKQVGIAKVITVET
                     KREKKAPPLLYALSDLQGECNRLFGFGAQQVLDIAQSLYEEHKITTYPRTDCGYLPES
                     QLTEVPMVIRSLVAADSELQTLLPRLNLQQKSRAWDDKKITAHHGIIPTIKKADLSKL
                     SEEEMKVYDLIRRRYLAQFLPHLETDKTIATLQSSGHTLIARGNVIVSQGWRILFGKN
                     ADEDVGSDDEKQGLPALTANQQCRVTHSEVRTLQTKPPAHYTEGTLLEAMKNAARFVT
                     DPRLKQRLRETEGLGTEATRAGLIQGLIDKGFLIKKKKSLMASAEAIALIDSLPDLLK
                     NPGLTALWEQALNQIAEGSMTLDDFMQRQETFVRQLIGNCMQQGMSLGNIEIRKCPEC
                     GKPMRKINHAKGTFWGCTGYPDCQHKEADKKVKSTSNKSTKKNSSLNVLDQLNKLRSQ
                     L"
     gene            complement(2247..2765)
                     /locus_tag="PXE26_000084"
     CDS             complement(2247..2765)
                     /locus_tag="PXE26_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5592714.1"
                     /translation="MRYIKYSLLLISTMIMSGCAELSAINDKVGDWAGQMNQTLYGSK
                     ESSVEQHNGRQVYIKTRNGKYVYQDSGTLQLKQNIDEVFLKVRREFGFRPTNADSDAR
                     KVYHTVQGTFYHVSGYFKSDVDNDGVDLGENYLEVIIEKGSKGTVNVEWKATGSTRWL
                     DSTKQRLLNTLK"
     gene            2874..3077
                     /locus_tag="PXE26_000085"
     CDS             2874..3077
                     /locus_tag="PXE26_000085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592715.1"
                     /translation="MELRKFPHHIIFIEQAKYGLQNYLLFELLTRTGQAVYFKHPIFH
                     TPNKEMRIVFVQDHKFLSLWQNK"
     gene            complement(3193..3393)
                     /locus_tag="PXE26_000086"
     CDS             complement(3193..3393)
                     /locus_tag="PXE26_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592716.1"
                     /translation="MANVKMKFSVEIDGEVIIQHEIEEQAEKRSYFSQERKLAKEIIN
                     KMNEFYSDRWIDAKPWIASDDK"
     gene            complement(3499..4008)
                     /locus_tag="PXE26_000087"
     CDS             complement(3499..4008)
                     /locus_tag="PXE26_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3158 family protein"
                     /protein_id="HDL5592717.1"
                     /translation="MNLISDEIYRQLVKDSGLNASLKQLFSHFDTVSDYAVLQEQIQQ
                     ARAYFMNAQDGMVQYVRSEFSPLAVYMIKDKASSSGGTFLRWRSMQNARTGGTVWQPI
                     VDDESVPVDVRQKVVAVEKDRILINMQISVFNHILRQLVDCTEKLKEVDNAVAKSGLY
                     PLKNPVCNP"
     gene            complement(4017..4775)
                     /locus_tag="PXE26_000088"
     CDS             complement(4017..4775)
                     /locus_tag="PXE26_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03761 family integrating conjugative element
                     protein"
                     /protein_id="HDL5592718.1"
                     /translation="MTTPLDLQLGPLRSEITFTLHTQYAHKLWMGRPMIRNEEGKVTQ
                     SSIISVPNCFAMLTQIQRAASEDDPYADDYLIQFEESVINYRKEIQKLTNDIVTLYAK
                     MLPEGISIERCANISPISYPIYVNSQLGYQLLYLLGDFDSLCRSVMTAAHIAIINRAE
                     AQDWIEAGARLIRKCFGIVERYKNSGITRRDYQENNARYQAAVKRMGYTLSDAVLTGE
                     HRAEFAPFIKQNGIVEEEQPVETHITTQANESQE"
     gene            complement(5315..6500)
                     /locus_tag="PXE26_000089"
                     /pseudo
     CDS             complement(5315..6500)
                     /locus_tag="PXE26_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252650.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(6659..7216)
                     /locus_tag="PXE26_000090"
     CDS             complement(6659..7216)
                     /locus_tag="PXE26_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2857 domain-containing protein"
                     /protein_id="HDL5592719.1"
                     /translation="MIKPITVNEALIGNALLNIKEGNIHPCLKMGFSEEQLKAINNLS
                     IDEIMDISNSVVSFAKVEINHETFWKLLAIAQTNTQQRQIIDRALLLGASIEMLHQYF
                     GLSTSEVSARRQLLGIEEKMGRKAAASDEESTHIWEIWQRYKQRMESLDSQEGLELLC
                     LIAEEGNMNLTVVWKLVSEWYSKHK"
     gene            complement(7209..8858)
                     /locus_tag="PXE26_000091"
     CDS             complement(7209..8858)
                     /locus_tag="PXE26_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL5592720.1"
                     /translation="MTKDEKRLAAIAKGLNVSPISNTAPSYQTATPAHYSSDEEYITV
                     TLDKLRPYEHNPRKTRNPNFEMIKESIRRRGLDHKPNITRRPGEDFYIIADGGNTRIQ
                     ALKELFTETKDPKFWSISCQYKPWQGDTADSVEAELNLLIGHLIENDTRADLSFIEKA
                     LGILQAKEYYEKKLNKSLSARELATELEGDGYIIHYTLANKMERCVLYLYPHIPEVLF
                     KGLGHTQIDKLLAIRNNAEEVWAAHQFDTDITFESLWSENLSKFNEATPFQAKEFQSE
                     LITAMVEALDGKVSFETLYLDIDLDEQKFKKIAAKQQEIDNLVEKTVDQINTRQEQQA
                     AKFEPVIKNENKSVATESAKNVIDDVIDDNESDNEQNNAITDLSQLDAPLLDSQDNQT
                     EDYLSQIAHNFGLTPGMSIQEQREQRAESNGLTFACEGRQPVEDIWLIHPARQYRSEA
                     YSLALDIAESVGIDHLVEHVVKQPVDYTYAMKPTDSELSPSVLTLYSFLSMLQTAKHK
                     DENNCVLDSNFLFELDDITLVKLFRLIRVSRHIHQQGGEND"
     gene            complement(8867..10231)
                     /gene="dnaB"
                     /locus_tag="PXE26_000092"
     CDS             complement(8867..10231)
                     /gene="dnaB"
                     /locus_tag="PXE26_000092"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL5592721.1"
                     /translation="MSNPNKPTTHLYSAEAEAAVIGGLLLDNTLFDDVIGKINSADFY
                     FGVHQALFKGITDLIEVGKPADILTLDEYLKQKNLLKEIGGFAYLAEVSKNTPSAANV
                     GAYADVVLLHSKHRQLLKLGQFIVDQTQTVKTPEKLESVIDEVEKKMTEFSLSDNTKS
                     ATDLSDIFASMLSRMELSAKNGDPVTGTPTGIQGIDEATTGGQPGDLIVIGARPSMGK
                     TAFSQTIAYHTLEKFESAPVFYHSMEMPADQILQRFLAMRARVGLQNIRQADRLDDEE
                     WAKLTAAMGYILEHWKNRLVIDDEGSLTPQKLRTKVRQNARKYGKPSAIFIDYIQLMQ
                     TSQRYENRNLEIANISRSLKLLAKEMDCPVYALSQLNRSLEQRANKRPINSDLRESGS
                     LEQDADVILFIYRDEIYDEDSAFKGTAEIIIGKQRNGPLTSVMTNFRSEFALFENRAS
                     TASH"
     gene            complement(10243..11067)
                     /locus_tag="PXE26_000093"
     CDS             complement(10243..11067)
                     /locus_tag="PXE26_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HDL5592722.1"
                     /translation="MKPLQNGTNKPFTITIASTKGGSAKSTNAANIGAFCAEHGLRTL
                     LIDTDTQPTLSSYYELEYQAPGGTYEFLHFKDVDPTHIISRTAIPNLDLIQSNDPSNK
                     ISPMLRDSPDGALRFSLLLQKIEGYDVIIIDTRGTRDITVDMSVLAADVLFCPILPHI
                     LSAKEFIRGTIGMYQDLETFTAFGFTLPPLKAMINCVDHTKDVKLVSDYLHTLFQNEF
                     DENKTLLEFSVPDRVAYREAATFSKPVYRQSQAEYETIRQLCALLMPQFAQSHFSE"
     gene            complement(11161..11246)
                     /locus_tag="PXE26_000094"
     tRNA            complement(11161..11246)
                     /locus_tag="PXE26_000094"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11210..11212),aa:Leu,seq:caa)
     gene            complement(11558..13018)
                     /gene="xseA"
                     /locus_tag="PXE26_000095"
     CDS             complement(11558..13018)
                     /gene="xseA"
                     /locus_tag="PXE26_000095"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HDL5592723.1"
                     /translation="MSNILTVTQLNYSVRHLLEMEMSHIWLTGEISNFSQPVSGHWYL
                     TLKDDKAQVRCAMFKMKNVRVNFRPQNGMQVLVRASVTLYEPRGDYQLIIESMQPAGE
                     GLLQQQFEQLKAKLSAQGLFAQEHKKPIPTFVKTVGIITSSSGAALQDILHILQRRDP
                     SLSVVIYPALVQGKEATQDIVNMIELANRRNECDVLIVGRGGGSLEDLWCFNEESVAY
                     AIYHSQIPIISAVGHETDVTIADFVADLRAPTPSAAAELVSRDQNELKRQLQHQFDKV
                     NLAFDRVWNHKFNRFQQLPLRLNAQHPSKQIQSQQQRFDYMEYRLEQAIYALVAAKKQ
                     VGKELNVRLIHQHPQKQIERQSQMLKQLELKLHWQMEQQLSKKQQKWKNITQRFERNP
                     LPYQLYQQQTMVAKMSQRLAYSIEKIMLKEQRHFQELCTKLDGLSPLKILTRGYSITQ
                     TKDGKTLTSTENIERGEAIITQLKTGKIISQVVDFL"
     gene            complement(13169..13245)
                     /locus_tag="PXE26_000096"
     tRNA            complement(13169..13245)
                     /locus_tag="PXE26_000096"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13209..13211),aa:Met,seq:cat)
     gene            13455..14561
                     /gene="mltA"
                     /locus_tag="PXE26_000097"
     CDS             13455..14561
                     /gene="mltA"
                     /locus_tag="PXE26_000097"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HDL5592724.1"
                     /translation="MNWKAYKKAIAAASVVAIATVLVACSSSGQKGKTTSYDAEKAKF
                     GAKYNGRHFMPYGTHFQAGRLGLNAAPVNQLDFLQQLSNVRAYSSLADSYAIAYGKIS
                     RWISSGGNINDLAKYGISTRLMRGEDGYQNVLMTGYYSPVIKARRTPQGQYQHPIYAM
                     PSSKRFSRAEIYAGALQGQGLELAYSNSMLDNFLLGVQGSGYVDFGDGRLNYFAYAGQ
                     NGFKYASVGRLLVEDGEIPKEKMSVQAIREWGQRNPSRVQGLLERNPSYVFFKNDPTG
                     QVKGSAGVPLVPLASVASDRSIVPSGSVLLVEMPLIDSKGNWTGKHEMRLMVALDVGG
                     AVKGHHFDLYQGIGDKAGHIAGLMKHYGRVWVLN"
     gene            14574..15023
                     /locus_tag="PXE26_000098"
     CDS             14574..15023
                     /locus_tag="PXE26_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592725.1"
                     /translation="MLKKLSAIFLLLPSAVLANNLQNITASTEPKYKISEIDVRILIR
                     QLNNIEQCIYPELAKPGYQQIYANWNLAENLTMQYFEYQLLKELLGEENQKLMQNDTL
                     STEYFHLLHSRLNHQKANVDPEKCDTFKPRYKEIYKSMENALTKKNQ"
     gene            complement(15057..16574)
                     /gene="purF"
                     /locus_tag="PXE26_000099"
     CDS             complement(15057..16574)
                     /gene="purF"
                     /locus_tag="PXE26_000099"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDL5592726.1"
                     /translation="MCGIVGIIGNSPVNQAIYDGLTLLQHRGQDAAGIVTIDDENRFR
                     LRKANGLVSDVFQQEHMVRLQGNVGIGHVRYPTAGSSSVSEAQPFYVNSPFGITLVHN
                     GNLTNNAELKARLYNEARRHVNTNSDSESLLNIFAYFLDLYSTQHLSPDNIFETVRKT
                     NDSIRGAYACIAMIIGHGMVAFRDPFGIRPLVLGKREIEGKTEYMFASESVALDVVGF
                     EFVRDVLPGEAIYVTFDGQLHSQICADNPKLNPCIFEYVYFARPDSVIDGVSVYSARV
                     HMGELLGEKIKREWGRIIDDIDVVIPIPETSNDIAVRIANMLYKPYRQGFVKNRYVAR
                     TFIMPGQAQRKSSVRRKLNAIASEFKGKSVLLVDDSIVRGTTSEQIVEMARAAGAKRV
                     YFASAAPEIRYPNVYGIDMPTCEELVAYDRSVEEVAQMIGVDKLIFQDLEALYKSIQL
                     ENPTIHRFDDSVFTGEYITGDVDKCYLDSIARSRNDKAKAEAAKQATNLEIHNER"
     gene            complement(16589..17092)
                     /locus_tag="PXE26_000100"
     CDS             complement(16589..17092)
                     /locus_tag="PXE26_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HDL5592727.1"
                     /translation="MVDLIVIGIIAFSVLISLWRGFTNEALSLLGWVIAFFVASSFYP
                     YLSGYLTQINSVYLQNSEFLRNGIAAAILFILTLIVCGVINGLLGKVIDLSGMSITDR
                     ILGGAFGALRGILIVSAILFFLDTFTQASQTELWKSSLLIPHFDFIVKWFFEQLQANS
                     SFLNTTK"
     gene            complement(17238..17699)
                     /gene="rnhA"
                     /locus_tag="PXE26_000101"
     CDS             complement(17238..17699)
                     /gene="rnhA"
                     /locus_tag="PXE26_000101"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HDL5592728.1"
                     /translation="MKLVEIFTDGSCLGNPGKGGIGILLRYNGYEKTVSKGYFQTTNN
                     RMELRAVIEALAMLKEPCKVQLNSDSQYMKNGIQKWIFNWKKNDWKTSDKKPVKNKDL
                     WVALDQEIQRHQIEWSWVKGHSGHRENEICDELAKQGANNPTLDDVGYIAD"
     gene            complement(17792..19123)
                     /gene="argG"
                     /locus_tag="PXE26_000102"
     CDS             complement(17792..19123)
                     /gene="argG"
                     /locus_tag="PXE26_000102"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005722481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HDL5592729.1"
                     /translation="MSATILEALPLGQKVGIAFSGGLDTSAALLWMRKKGAVPYAYTA
                     NLGQPDEDDYNAIPKKAMEYGAENARLIDCRQQLAHEGIAAIQCGAFHISTGGIPYFN
                     TTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPKLKIYKPWLD
                     QLFIDELGGRLEMSKFLIENGFDYKMSVEKAYSTDSNMLGATHEAKDLEELSTGMKIV
                     KPIMGVAFWDESVEIKAETVSVTFEEGVPVALNGKRIDDAVELIMEANRIGGRHGLGM
                     SDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRINGLRLGRLLYQ
                     GRWFDPQALMLRETAQRWVAKAITGTVTLELRRGNDFTILNTESPNLTYEAERLSMEK
                     VEDAPFTPADRIGQLTMRNLDIVDTRGKLAVYTDAGLLAANNSVIPQLGKK"
     gene            19307..20347
                     /locus_tag="PXE26_000103"
     CDS             19307..20347
                     /locus_tag="PXE26_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5592730.1"
                     /translation="MKKLLVIRNDKIGDFMVCFPAFAMLKQSMPNVEITALVPSYTAP
                     LAELCPSIDKIIIDTANKKDKNEFNRILQAVKNEQFDAVICFVSDWHNAKLTWQSGIK
                     YRLAPATKLFQFLYNHRLTQRRSQSAKAESEYNLDLARAFLSKHNIPIVEPHTPYLSV
                     EQQTVQAQKAKLCEQLNITTVKKWVFVHSSTGGSANNLSIEQYAELIQGILAEFDCYV
                     VLTAGKGESEKAQQLAQQINHNNVVVYDKNEGLQDFTHSLACADLFIAGSTGPLHISG
                     ALNIPTIGFYPSRLSAIPRRWKPINDANKHIAFCPPSDKASQMNLTLISISEALKTIV
                     PFIRRMWNTPSL"
     gene            complement(20412..21170)
                     /locus_tag="PXE26_000104"
     CDS             complement(20412..21170)
                     /locus_tag="PXE26_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL5592731.1"
                     /translation="MPTLSVAMIVKNEAQDLRACLDTVKDWVDEIVILDSGSTDETPQ
                     IAAEYNARFYTNTDWQGFGKQRQLAQQYVTSDYVLWLDADERVTAELKQSILQAVKND
                     EKNTVYKISRLSEVFGKQIRHSGWYPDCVVRLYRTEFAKYGDELVHEKVHYPKEAKIQ
                     KLQGDLLHFTYKDIHHYLVKSASYAKAWAIQRANAGKTASLFDGVTHAIGCFVKMYLL
                     KAGFLDGKQGFLLAVLSAHSTFVKYADLWNRTRK"
     gene            21297..21611
                     /gene="yhbY"
                     /locus_tag="PXE26_000105"
     CDS             21297..21611
                     /gene="yhbY"
                     /locus_tag="PXE26_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010786380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HDL5592732.1"
                     /translation="MSITLTTKQKQFLKGLAHHLSPVVMLGGNGLTEGVLAEIDNALD
                     HHELIKVKVAGADRETKQLIIDAILRETKAAEVQTIGHILVLYRQSEEKKISLPKATK
                     AI"
     gene            21672..22394
                     /locus_tag="PXE26_000106"
     CDS             21672..22394
                     /locus_tag="PXE26_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HDL5592733.1"
                     /translation="MFKKFSLYTLAMLLIPVVTWLANWHWSLAIQYAEFDFDYFLYLI
                     TETGSVPYAIITCVVFALLLARVVRKRYSLIFVITVCVASMVATQAIKTAMKSTFQEP
                     RPFVTALFQDKTDDFYQLTREQRGLAVMEKIGANQNFVTAHQAKEVGYSFPSGHTIFA
                     VSWLLLVVGFCRNMRGQAVVLAHFFAISWAALMLISRLRLGMHYPIDLFTSSLIAFLI
                     NLALFVWFVPWLESKKWFAKKP"
     gene            22463..22624
                     /locus_tag="PXE26_000107"
     CDS             22463..22624
                     /locus_tag="PXE26_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592734.1"
                     /translation="MEMSIEKIAELLSDKEKDDYPFSIEERQFAAQASADTWEAILNN
                     TIQPFDFKK"
     gene            22632..22994
                     /locus_tag="PXE26_000108"
     CDS             22632..22994
                     /locus_tag="PXE26_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592735.1"
                     /translation="MYQVFIAEPKDPNLEKGLLKHFIKSYLTQEELDFLHKILTNLPN
                     IRPFWGDTGYKYIVIDNVYFLYEVSESETKVILLGTKFNNKRKTFNFANTKTQQKSMK
                     KWINDLAIYKPHKINQSQ"
     gene            23007..23924
                     /gene="nagK"
                     /locus_tag="PXE26_000109"
     CDS             23007..23924
                     /gene="nagK"
                     /locus_tag="PXE26_000109"
                     /EC_number="2.7.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
                     /protein_id="HDL5592736.1"
                     /translation="MAIYYGLDVGGTKIELAAFNEKLEKLHSERVPTPQTNYQDWLTA
                     IKTLVETADTKFDEKGTVGLGIPGFVNRETGIAEITNIRVADGKTILKDLAECLGREV
                     RAENDANCFALSEAWDESNKPYSTVLGLIIGTGFGGGFVFDGKIHSGRIGMAGEVGHM
                     QLNYHALKLLDWDKAPIYECGCGNQACLDTYISGRGFELLFNDLVGEKISAKAIIERF
                     YQQETKVVAFVEKYIELMAISISNLITILDPDMIVFGGGLSNFDYIYQALPKALPKHL
                     MRSAKVPVIKKAIHGDSGGTRGAAALFLK"
     gene            complement(23995..25944)
                     /locus_tag="PXE26_000110"
     CDS             complement(23995..25944)
                     /locus_tag="PXE26_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HDL5592737.1"
                     /translation="MYQRSQSRTVLFPILLFVGINLVILTLSRLVLGVWQSDRVSAVD
                     GWIPLILQGIRIDISSLCWLFGLPALFSVLCFHKNVLGSIWQTVLRIWLTVGSVFILF
                     MEVATPNFIETFDLRPNRLFIEYLVHPREVFTMLINGHLWAVICGIGIAMISLIIYWK
                     LSGWATKNLHFPSWKMRPLLALLVAAIVFVGGRSSFAHRGINPAMVAFSSDPLVNSLV
                     LNSGYSVLYAVQQLKDEDKSSEQYGKMSVEEMFNIVKQVRNRPASDYISDEIPTLTQN
                     KATYQGKPKNIVIILEESLGAQFVGSLGGKNLTPNLDKLSEQGWYFTNLYATGTRSVR
                     GIEAVTAGFTPTPARSVVKLTKSQTNFFSIAELLKRQGYHTSFIYGGEKHFDNMASFF
                     YGNGFQQIIDEKDYKNPKFTATWGVSDEDLFDKANETFNQLHKSGKPFFSLVFSSSNH
                     DPFEFPDGKIELYEQPKQTRHNAAKYADYAIGHFFELAKKSEYWQDTVFLVIADHDSR
                     AVGEHLVPIQHFHIPALLLGEHIQPRTDNRLVSQLDMPTTLLSVAGISGQYPMIGYDL
                     TQDIDPNRAFMQYDATQAMMRGNDVVVMRPNLPIEGFSYDKANYKLTPKEQPESFKKE
                     ALAHALLGSYLYKNQLYKLPEETKQ"
     gene            complement(25977..26765)
                     /locus_tag="PXE26_000111"
     CDS             complement(25977..26765)
                     /locus_tag="PXE26_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HDL5592738.1"
                     /translation="MQVTELNIYPIKSTQAIQVSQAFVEPKGLNFDREFMLAEPNGKF
                     ITARKDPELYRLAAFPIATGVMITHTSGQKCVALYQDFVEEQSSEVWGTHFNAKVAAE
                     AVNQWLSEIFGRAVQLRWLGSQSQRIVANFADHPMSFADSNPVSLMSLKSLEQVQQWS
                     PIPLEMARFRPNIVIDGNVAFEEEQWQQVQIGEVLFTKAALCTRCILITRDLNTLELD
                     PKSEPFRTLKEKHCDEKGKPVFGIHLVPQNSGVIKVGDPVIIQL"
     gene            26890..27120
                     /gene="xseB"
                     /locus_tag="PXE26_000112"
     CDS             26890..27120
                     /gene="xseB"
                     /locus_tag="PXE26_000112"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HDL5592739.1"
                     /translation="MAKKPTQDFESTLKELEAIVTHLESGDLPLEEALNEFETAIKLV
                     QQGQERLQKAEQRIQILLNKNDTAPLSDYERE"
     gene            27126..28019
                     /gene="ispA"
                     /locus_tag="PXE26_000113"
     CDS             27126..28019
                     /gene="ispA"
                     /locus_tag="PXE26_000113"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl diphosphate synthase"
                     /protein_id="HDL5592740.1"
                     /translation="MSYLLATDLTHLQQRINHFLAEKLKTTDSVGSPLVEAMAYAVLL
                     GGKRVRPFLIYATGRMLGVPLEKLDHSAAAMEAIHAYSLVHDDLPAMDDDRLRRGKPT
                     CHIAFDEATAILAGDALQSFAFELLATDPHLTDREKVVQVTELATASGAKGMCLGQSL
                     DLIAENKAVSLEELELIHRNKTGALILSSVMMGLNLSEYSQNVAIKQPLVNYAKAIGL
                     AFQVQDDILDVIGETDKIGKIVGSDEHLNKSTYPKLLGLDGAKQKAEMLYQTALHSLE
                     QLPFDTTALKELANFIVKREN"
     gene            complement(28054..28854)
                     /locus_tag="PXE26_000114"
     CDS             complement(28054..28854)
                     /locus_tag="PXE26_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HDL5592741.1"
                     /translation="MCQLLGMNCNTPTDITFSFDGFRRRGGLTDHHTDGFGIAFFEGK
                     GVRVFRDNRPGASSPMAEAISQYQIKSLNVIAHIRKATRGDVNLENTHPFIRELWGEN
                     WVFAHNGTVEGVGVCEECHYQPIGTTDSEAAFCRIVSELKEMYPAKPSEKEIFDAVVQ
                     ITSRIAEHGVFNFVLSNGHWMIARCTTNLHYVCRKAPFGKALRDDDVSIDFSQYTKIT
                     DKVTIIATQPLTKNENWTKMKNGGYVFFKDGDVVYEIEGTLPEAQPHV"
     gene            complement(28979..29764)
                     /gene="znuB"
                     /locus_tag="PXE26_000115"
     CDS             complement(28979..29764)
                     /gene="znuB"
                     /locus_tag="PXE26_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter permease subunit ZnuB"
                     /protein_id="HDL5592742.1"
                     /translation="MFDILFPAWLAGVLLAFITAPLGAFVVWRKMAYFGDTLSHSALL
                     GVALGIFLELDPYLAVIGMTILLALLLVWLEQKTNYSVDTVLGIIAHTSLSLGVITIS
                     LLDNVRVDLMSYLFGDLLAINFSDVVFIGIGATLICLILMLFWKRLLSITISPELAQI
                     EGLNVARLRLLLMILTALTIALSMKFVGALIITSLLIIPSATARRFAKTPEKMVLIAI
                     FFSIIAVSGGLLLSSWKDTPAGPSVVICAGLIFLLSLFKKEYH"
     gene            complement(29851..31188)
                     /locus_tag="PXE26_000116"
     CDS             complement(29851..31188)
                     /locus_tag="PXE26_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HDL5592743.1"
                     /translation="MSSLSFDFSEDFRPLAAKMRPRNLAEYVGQSHLIGEGKPLRRAI
                     EAGHSHSMIFWGPPGTGKTTLAEIIAHHLDAEVERISAVTSGVKEIREVIEQAKLNRQ
                     AGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARIYI
                     LKPLQAVEILKILQMAIADTERGLGNETLVLEDDVLALLADYVNGDARFALNCLELMV
                     DMAQDSAKGKVLNKSLLTEVLGERQARFDKGGDRYYDLISALHKSIRGSSADGALYWY
                     ARILTAGGDPLYVARRLLAIASEDIGNADPRAMQIAIVAWDCFTRVGAYEGERAIAQA
                     IIYLAVAPKSNAVYQAFNEAKRLAKEAKDYDVPAHLRNAPTQLMKSLGYGEEYRYAHN
                     EPNAYAAGENYFPPELKDTEFYFPSERGMEKQIKEKMAWLKAQDQASPIQRYK"
     gene            complement(31198..31686)
                     /gene="mreD"
                     /locus_tag="PXE26_000117"
     CDS             complement(31198..31686)
                     /gene="mreD"
                     /locus_tag="PXE26_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HDL5592744.1"
                     /translation="MRTNPIFQILVIIAIFVVAFVLEIMPWPVGFQGLRPTWVVLVLI
                     YWALALPDKMSVGTAFIAGIVWDLILGSILGIHALVLSVAIYFVAKYHLILRNLSLWL
                     QSLLVMAYIVLIRFFIFVIEYILHSAEFNSQELLGAVISGVLWSWIFLLMRHIRRQLR
                     LR"
     gene            complement(31686..32741)
                     /gene="mreC"
                     /locus_tag="PXE26_000118"
     CDS             complement(31686..32741)
                     /gene="mreC"
                     /locus_tag="PXE26_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HDL5592745.1"
                     /translation="MKPIFAKAPSLGMRLIIAVIFSIMLIISDGRSSLMIQARNLLET
                     AVSGLYYFANTPRSILDGVSGNFIDNNKLQLENNLLKEQLREKSADLLLLDQLKVENQ
                     RLRLLLSSPLRQDEYKKIAEVLAAEMDAYRQQVVINQGRLDGAFVGQPIIDERGVVGQ
                     VISVGEKSSRVLLLSDITHAIPVQVLRNDVRGIASGTGVNNELVIDNLPRSIDVVKGD
                     VLVTSGLGGRFPEGYPVAIVETVENDTKSQFARIVARPLASFDRLRYLLLLWPTAEEK
                     NYSQSLSPAQVREVVEERRNSVNPFERLKQMSNKKTEVQLEAKEEQIENDEINENPAA
                     QPEAENEQNYHTEEGAE"
     gene            complement(32843..>33832)
                     /locus_tag="PXE26_000119"
     CDS             complement(32843..>33832)
                     /locus_tag="PXE26_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HDL5592746.1"
                     /translation="TLVYVKGQGIVLDEPSVVAVRQDRMGSLKSIAAVGSHAKLMLGR
                     TPKSIMAIRPMKDGVIADFFVTEKMLQHFIKQVHSNNFMRPSPRVLVCVPAGATQVER
                     RAIKESAIGAGAREVYLIEEPMAAAIGAGLPVHEAMGSMVIDIGGGTTEVAVLSLNGI
                     VYSTSVRIGGDKLDEAIIAYVRRHFGSAIGEATAERIKQEIASAKIESDDDVKTMEVH
                     GHNLAEGAPRTFELNSRHVLEAIEQPLNGIVEAVKSVLEQCPPELAADIFERGMVLTG
                     GGALLHNLDRLLSDSTGVQVVVAEDPLTCVARGGGKALEMIDMHGGDVFSIDD"
BASE COUNT         9971 a         7179 c         6438 g        10244 t
ORIGIN      
        1 tttgcacttt gataatacca taatctgctt agatttataa ctggcttctt aatttattca
       61 gctgatctag cacatttaag ctactatttt tcttggtaga tttatttgaa gtcgatttga
      121 cttttttatc tgcttcttta tgttggcaat ccggatatcc tgtacaaccc cagaatgtac
      181 ctttagcgtg attgattttc cgcattggct taccacactc cgggcatttt cgaatttcaa
      241 tattacccaa tgacatacct tgttgcatac aatttccgat aagttgtcgt acaaaggttt
      301 cttgtcgttg cataaagtca tcaagggtca tactgccttc agcaatttga ttaagtgcct
      361 gttcccaaag agccgttaaa ccgggatttt ttaataaatc cggtaggcta tcaataaggg
      421 caatcgcttc agcagaagcc attagggatt ttttcttctt aattaaaaaa cctttgtcaa
      481 tgagcccttg aatcaatccg gcacgagttg cctctgtacc caatccctcc gtttcacgca
      541 accgttgttt aagtcttgga tcagtcacaa agcgagctgc atttttcatt gcttcgagta
      601 gtgttccttc agtatagtgt gccggtggtt tggtttgtaa tgtccggact tctgaatgtg
      661 taacacggca ttgctgattt gccgtcaatg caggtaagcc ttgtttctca tcatcactac
      721 caacatcttc atctgcattt ttaccaaaca ggatacgcca accttgagaa acgatcacat
      781 ttcctctagc aatcagagtg tgtccagagg actgcaaggt ggctatagtt ttatctgttt
      841 ctaagtgcgg taagaattga gcgagatagc gacggcgaat gagatcatag accttcatct
      901 cctcctcact taacttgctt aaatctgctt ttttgatagt ggggataata ccgtggtgag
      961 cagtaatttt tttatcatcc caagcccgac ttttttgttg tagatttaat cgaggcaata
     1021 gagtttgtaa ctctgaatca gcggcgacta atgaacgaat taccatcggt acttcagtaa
     1081 gctgagattc aggtagatag ccgcaatcgg tacggggata agtagtaatt ttatgctcct
     1141 cataaagtga ttgagcaata tcaagtactt gttgagcccc aaaaccaaac aagcggttac
     1201 attccccttg taaatcactt aatgcataaa gcaacggcgg tgcctttttc tctcgtttgg
     1261 tttcaaccgt tatcactttg gctatgccta cttgtttaat ttgagcttca gcttgttgta
     1321 tgacccgact atcaaggcaa agccctgatt catctaaata ctgttcaggt attgaaagcc
     1381 cggcaacaaa ggtttcatca gacgctgttg ctaattgaac tgctaaggag taatgagctt
     1441 taggcacgaa atttgcaatc tctctgtctc gattgaccac aagagctagt gttgggcttt
     1501 gcactcgacc aacgcttaat ggcttaccgg aatagccttt tgcttgggcc attaaggtaa
     1561 atagacggga gaagttcatt ccaatcagcc agtccgagcg gctacgtccc ataccagcgt
     1621 agtaaagtgc ctcggtttct ttacctgatt tgagtgtttg gagagctttt cggatactgg
     1681 catcatcgag agctgatagc cagcaacgct gtatttgtcc tcggtatccg gctaaatcta
     1741 acagttcacg agcaatcatt tcaccttctc tgtctgcatc ggttgcaatc acaaccaaag
     1801 aggctttctt aattaatccg atgactacat tgtattgttt cttggactct tttttaggag
     1861 ccattttcca ttgagcagga atgatcggca atgtttcaaa tgcccagcgt ttccaaactt
     1921 catcataatc ctcgggttgg tattgctcaa caagatgacc aaatccccaa gttacaataa
     1981 tagacttatc attagttgcc aatagtccat cccctttcga tgtagcacct aatacacttg
     2041 caagatctcg ggcttgagag ggcttttcac aaataaacag tttcatacta ttttccaaaa
     2101 tcaatacgga taggcaatag taatgtgctg attaaatagc attcaacgac ttattatctt
     2161 gtagaatgca ataaattgag agatgagaac gataaaaaaa tcccagtgtt tccactggga
     2221 agaggttcta ggagcgatat gagttcttat tttaatgtat taagtaaacg ttgtttggta
     2281 ctatctagcc atcttgtact acctgtggct ttccattcaa cattcaccgt gcctttactg
     2341 cctttttcaa tgataacctc taagtagttt tcacctaaat ccacgccgtc gttatctaca
     2401 tcagatttga aataaccgga aacgtggtaa aaggtacctt gtaccgtatg ataaacctta
     2461 cgtgcatcgc tatctgcatt ggttggacgg aagccaaatt ctcggcgaac ttttaggaag
     2521 acttcatcaa tattctgttt caactgtaat gtgccggaat cttgatagac atacttgcca
     2581 tttcgagttt taatataaac ctgtcgccca ttatgctgtt caactgagct ttctttagaa
     2641 ccatagagag tctggttcat ctgtcctgcc caatctccaa ccttatcatt aattgcagaa
     2701 agttcggcac aacctgacat aatcatagta gaaatgagaa gtaagctata tttgatgtaa
     2761 cgcatggaat tctccttaca agcgggttat ctgcattcat tttttgcaaa agtgcggtta
     2821 aaatctactt aaaattcttt taggtagtaa gagagaaaat gctagggact attatggaat
     2881 taagaaaatt tcctcaccac attatcttta ttgagcaagc taaatacgga ttacagaatt
     2941 acttactctt tgaactatta acaagaacag gacaagcggt ttactttaag catccgatat
     3001 tccatacccc taacaaagag atgagaattg tctttgttca agatcataaa tttttatccc
     3061 tatggcaaaa caaataacct tattaaagaa tgggataaat cgtcctacac tcaggaagat
     3121 tttattgcta ttaagttaaa taccttagcg aaatcaattt atgaaacctg taatcgatga
     3181 tgctcattgc ttttatttat cgtcagaagc aatccaaggt tttgcatcaa tccatctgtc
     3241 agaataaaat tcattcattt tatttataat ctctttggcc aatttacgct cttgcgaaaa
     3301 gtaagagcgt ttttcggctt gctcttcaat ctcatgttga atgataactt caccatctat
     3361 ttcaacactg aatttcattt ttacatttgc cattgtttac tccgaaataa taaaggcatt
     3421 ttcttcgtga aaggtaaggg ggcttgtccc cttaccttta aaaggccttt taatgcaggc
     3481 tttacaaacc ttactttttc agggattaca aactggattt ttcaggggat acaaacctga
     3541 ttttgcaacc gcattatcca cttcttttag tttttcagta caatcaacca actgtcgcaa
     3601 aatatggtta aacacggaaa tctgcatatt gatcaaaatt ctgtcttttt ccactgcgac
     3661 aactttttgt ctcacatcga ccgggactga ttcatcatct acaatcggtt gccaaactgt
     3721 gccaccggtt ctggcattct gcatactgcg ccagcgtaaa aacgtaccac cggaagaaga
     3781 agccttatct ttaatcatat agaccgcaag gggagagaat tcgctacgaa catactgaac
     3841 cataccatcc tgtgcattca taaaataagc ccgtgcttgc tgtatttgct cctgcaatac
     3901 agcatagtct gagacagtat caaaatggct aaatagctgt ttcagagatg catttaaccc
     3961 ggagtctttg actaattgcc gataaatttc atcagaaatg aggttcatat cactccttat
     4021 tcttgagatt catttgcttg tgtcgtgata tgggtttcta cgggttgttc ttcttcaaca
     4081 atgccgtttt gcttgatgaa aggagcaaat tcagcacgat gctcaccggt aagtacagca
     4141 tctgacaatg tatagcccat tcgttttaca gcagcttgat agcgagcatt attttcttgg
     4201 tagtctcggc gagtaatacc ggaattttta taacgttcaa caatcccaaa acatttacga
     4261 attaatcttg cacctgcttc aatccaatct tgagcttctg cacgattgat aatggcaata
     4321 tgagcagctg tcattactga gcgacaaaga ctgtcaaaat caccaagtaa gtaaagcaac
     4381 tgatagccta actgtgaatt aacataaatc gggtaagaaa tcggggaaat attggcacag
     4441 cgttcaatag aaattccctc cggcaacatt ttggcgtaga gcgtgacaat atcgttggtg
     4501 agtttttgaa tttccttccg ataattgatc acactttcct cgaattgaat aaggtaatca
     4561 tcagcataag gatcatcttc tgatgcagcc cgttgaattt gggttagcat tgcaaagcaa
     4621 tttggtacgc tgataatgga ggattgagtt actttgcctt cctcattacg aatcattggt
     4681 ctccccatcc ataatttatg ggcatattgg gtatgtagcg taaacgtgat ctcactacga
     4741 agtggaccta attgtaagtc taatggtgtg gtcatatatg ctccttgttt atttgattgt
     4801 tttttagcct ttggaaaggg gctttccatt gtctattttt ttaacctttg tagacactgt
     4861 ctactctgtt tattttttaa tcagtgtgta ccccctacac actgattgtt ttttgctcat
     4921 tgtagagtcc ctacacactg attgtttttt gctcattgta gagtccctct acactgatta
     4981 ttttttactc actgtagaac ccctctacac tgattatttt ttaatcactg tgtaccccct
     5041 acacactgat tgttttttgc tcattgtaga gtccctacac actgattgtt ttttgctcat
     5101 tgtagagtcc ctctacactg attatttttt actcactgta gaacccctct acactgattg
     5161 ttttttaatc attgtaaaca gtgtttacag tgattatttt ttagcctttg aagcgggccg
     5221 cttcactgat tatttttcac tcactgtgta atccctacac gctgtctgtt ttttgctcgc
     5281 tgttaagccc cttaacagtg attgtttttt aaccttattg taaaagtaat tcagctctaa
     5341 acttctgcat acggctcgcc atttgctctc tgtctgctgg agttaatacc ggtttctcag
     5401 taggctgctc agtcagtttt tgtatagaat gagcagaatt attgttagtc tgattttgtg
     5461 agggaagatt ttttcctaat tcaaaatagt agggtttaaa ttcaccctgc ttcgcccgct
     5521 ggataagcgt atagagataa cctttcggtt ttttcacatc ctgcttttga ataatgcgtt
     5581 gttgtgcttc cagcaaaata gcttggcata aaccgagatc gaatcctttc attgcctgtg
     5641 cagtgagttt ttgttcaagt gaggttagtg ggatttcttg tggccaagta atttcgctag
     5701 gttccccagt acagtactta ttaatatata aagtactgta catctgactt ccttaatgga
     5761 agtaagtcta aaatcaatga cttatcttca tttttagccc taacttcctt attggaagtc
     5821 tggttttttg aggatttttt cctgacttcc tcatcaaaat ccctaacttc catagtggaa
     5881 gtcaggatat tttgttgaat tttgcttaat tcttgttctg tttgcgatgg ctgtttatct
     5941 ttcaccagct gctgttgctg gtatgtttga taacgacttt gcaaacagtc taaatgagag
     6001 acataatgcc atttggtttt gtctgtcatt agactttcaa caatatgatt tgccacacca
     6061 ttaataaggc tatctttatg tttggtgcat ttatctaaaa aagagagata gtcgctattt
     6121 aattgaattg catctaaaat tggcacaggt tcatcgtgca ggatatacac attaccttgt
     6181 acataacctc gctcatcacg cactgtttca cataaagtaa gccagcgagt aagacggagt
     6241 aaatagagtg tttgagtcac gactttttcc gataatttag cctccgcata aggtctatcg
     6301 gataacattt tgctgagcgt ctcataagag ggaaataatc ctccttgaaa ggcctgaaca
     6361 ttgcacttaa tgagctgcca agcaaacttt gctcttggtg taaggcaggg atcttgtaat
     6421 aatcgagtag ggactgtttc gtgttggttg ccaaaaaata gtaatccatg ccctgttggc
     6481 ttattcgtac tgctaaacat tgtttctctc cactaggata aaagagtttt tctcttgcta
     6541 ttctccctcc tatgactata atgcacggga cttcggcaaa gtccttgtaa ttcataggat
     6601 agatatacaa gacccaatat cgaatgcccc aaagctccaa cttcggggca tttgtttttt
     6661 acttatgttt tgaataccat tcggaaacta gtttccaaac aacagttaga ttcatattac
     6721 cttcctcagc aatcaggcaa agaagctcta acccttcttg tgaatctagg ctttccattc
     6781 gttgtttata tcgttgccaa atctcccaaa tatgagtgga ttcctcatca cttgctgcgg
     6841 ctttccgtcc catcttctct tcaatgccga gtaattgacg gcgtgctgaa acctctgatg
     6901 tcgataaacc gaaatactgg tgcagcatct caatagaggc tcccagtaat aaagcccggt
     6961 ctataatttg tcgctgttga gtattagttt gtgcaattgc cagtaatttc caaaaagtct
     7021 cgtggttaat ctctactttt gcaaaagaca ctacggagtt gctaatatcc ataatttcat
     7081 caatactgag attattgatt gcttttagtt gctcttcaga aaatcccatt tttaaacaag
     7141 gatggatatt tccttcttta atattgagca gggcgttacc aatcaatgct tcatttacgg
     7201 taattggctt aatcattttc tcctccttgt tgatgaatat ggcgactgac ccgaatgaga
     7261 cggaaaagtt tgactaaggt aatatcatca agctcaaaca ggaagttgga atctaggaca
     7321 cagttatttt catccttatg tttagctgtc tgtaacattg aaaggaatga atagagtgtt
     7381 agaacagacg gtgaaagttc actatctgtc ggtttcattg cataagtgta atccacaggc
     7441 tgtttcacaa catgttcaac caagtggtca atgcccacac tctctgcaat atctaaggca
     7501 agggaatacg cctctgaacg atattgacga gcaggatgaa tcaaccaaat atcttcaacc
     7561 ggctggcgac cttcgcaagc gaaagtgagc ccattggatt ctgctcgttg ctctcgctgt
     7621 tcttgaatgc tcattcccgg tgttagtccg aagttatgag caatttggga gagataatcc
     7681 tcagtttgat tatcttggct atctaacaat ggagcatcta gctgagataa gtcagtaatg
     7741 gcgttattct gctcattgtc actttcgtta tcatctatta catcatcaat aacattttta
     7801 gctgattctg tggcaacaga tttattttca tttttgataa ctggttcaaa ttttgctgct
     7861 tgttgttcct gtctggtatt gatttgatcg actgtttttt caactaaatt atcaatttct
     7921 tgttgtttag ccgctatttt tttgaatttt tgttcatcta agtcaatatc tagataaagt
     7981 gtttcaaaac tcacttttcc atctaaagct tcaaccattg ccgtaatcaa ttcactttgg
     8041 aattcttttg cttgaaatgg tgtagcttca ttaaatttgg ataaattttc tgaccagagc
     8101 gattcaaaag taatatcagt atcaaattga tgggctgccc atacctcttc ggcattatta
     8161 cgaatagcta ataacttatc gatttgagta tgccctaaac ctttaaatag aacttctgga
     8221 atatggggat atagataaag tacacatcgc tccattttat tagccaacgt atagtggata
     8281 atatagccat caccctctaa ctcagtagct aattcccttg ctgaaagtga tttattcaat
     8341 ttcttctcgt aatattcttt cgcctgtaaa ataccaagag ctttttcaat aaatgacaaa
     8401 tccgcacggg tatcattttc gatcaaatgc ccgataagta aattgagttc ggcttcgaca
     8461 ctgtcggcag tatcaccttg ccaaggctta tattggcaac tgatagacca gaatttcgga
     8521 tctttggtct cagtaaacaa ttctttaagt gcctgaatac gagtattacc gccgtcagcg
     8581 ataatgtaaa aatcttctcc cggacggcgg gtaatattag gtttatgatc taacccacga
     8641 cgccggattg actctttgat catctcaaag ttaggattac gggtttttct agggttatgt
     8701 tcatacggcc gtaacttatc taatgtcacc gtaatatatt cctcatcact actgtaatga
     8761 gccggtgtcg cagtctgata ggagggtgcc gtatttgaaa taggtgaaac atttagcccc
     8821 ttcgctatag ctgctaatct tttttcatct tttgtcataa tctgtcctaa tgtgatgctg
     8881 tgcttgctct attctcaaaa agtgcaaact cacttctaaa attggtcatt actgaagtca
     8941 gcggtccgtt tcgttgttta ccgataataa tttcagcagt gcctttgaag gcggaatctt
     9001 catcataaat ttcatctcga tagatgaata aaatgacatc ggcatcttgc tcaagtgagc
     9061 cggattctcg taaatcagag ttgatagggc gtttattggc ccgctgttcc aatgagcggt
     9121 tcagctgaga taaagcataa acagggcaat ccatctcttt ggctaacaac ttaagtgagc
     9181 gagaaatatt cgcaatctcc aaattgcggt tttcatagcg ttgcgaagtc tgcataagct
     9241 gaatatagtc aataaaaatg gctgacggtt ttccatactt acgggcattt tggcgaacct
     9301 tagttcttaa tttttgagga gtcagactac cttcatcatc aataactaag cgatttttcc
     9361 agtgttcaag gatatacccc attgcagctg tcaattttgc ccattcctca tcgtccaagc
     9421 ggtctgcttg tcgaatattt tgcaatccga ctcgggcacg catagcaaga aaacgttgta
     9481 aaatctgatc tgccggcatt tccatactgt gatagaacac aggagccgac tcgaattttt
     9541 caagtgtatg gtaggcaata gtttgagaaa atgcggtttt tcccatcgaa ggacgggcac
     9601 caatcacaat taaatcaccc ggttgcccac cggtagtcgc ttcatcgatg ccttgaatac
     9661 ctgtcggtgt tccagtcaca ggatcaccat ttttagccga aagctccata cgagagagca
     9721 tactggcaaa aatatcactt aaatctgttg cagatttggt attgtcagaa aggctgaatt
     9781 cagtcatttt tttctcaact tcatcaataa ctgattcaag tttttccggt gttttcacag
     9841 tctgtgtctg atcgacaata aactgcccca gttttaaaag ttgccggtgt ttactgtgta
     9901 acagaaccac atcagcataa gcccccacat tggccgccga aggggtgttt tttgaaactt
     9961 ctgcaagata ggcaaaaccg ccgatttcct tcaacagatt tttctgtttt aggtattcat
    10021 ctaatgtgag aatatctgca ggtttcccca cctcaattaa atccgtaatc cccttgaata
    10081 aggcttgatg cacaccaaaa taaaagtcag ccgaattaat cttgccaatg acatcgtcaa
    10141 agagagtgtt atctaataac aatcccccga tgacagcggc ttcagcttct gctgaataga
    10201 gatgggtggt tggtttattt gggttagaca taaatccccc aactactcag aaaaatgtga
    10261 ttgtgcaaac tgtggcatca gtaatgcaca aagctgacga atggtttcat attcagcttg
    10321 gctctggcga tagacaggtt ttgaaaaagt tgccgcttct cggtatgcca cacgatcagg
    10381 cacagaaaat tccagtaatg ttttgttttc atcaaactca ttttggaaga gagtatgcag
    10441 gtagtcggaa accaatttga catctttggt atgatcaaca cagttaatca ttgcttttaa
    10501 cggtggcagg gtaaaaccaa aggctgtaaa agtttctaga tcttgataca taccaattgt
    10561 gccacgaata aattctttag ctgacaagat atgaggaaga atcgggcaga aaagaacatc
    10621 agcagccaat accgacatat ctacagtaat atctcgagtg ccacgggtat caatgataat
    10681 gacatcatag ccttcaattt tctggagcag taaactaaaa cgtaaagccc cgtccggtga
    10741 gtctcttagc attgggctga ttttatttga cgggtcatta gactggatca agtcaagatt
    10801 tgggatagcc gttctagaaa taatgtgggt aggatctaca tctttaaaat gcagaaattc
    10861 ataagttcca ccgggagctt gatattccaa ctcataataa gagcttaatg tgggttgagt
    10921 atcggtatca ataagaaggg ttcttagacc gtgttctgca cagaatgcac caatgttagc
    10981 ggcattcgta ctcttggcag agcctccttt ggtcgaagca atagtaatgg taaaaggttt
    11041 gtttgtaccg ttttgtaatg gtttcataat ttactctctt aacaaagttg aagttaagga
    11101 gtattggcat tataaactgt atatttagag tgagtattat ttgaaaggaa cgcagttgaa
    11161 tggtgcctga ggtcggactc gaaccgacac ggttattcac caatggattt tgaatccatc
    11221 atgtctacca atttcatcac tcaggctgag agtgtttttt attcaatcgc cagtatttcc
    11281 tattagtcta cgcaaaagat tttgaatccg ctgcgtctac cgatttcgcc acactggctt
    11341 aatttttgca cgattatagg gaaatatgac cgcttgtgca agcgtaaaaa tgccttttga
    11401 aatcggttga tttaaaaatc agcactcaat tcatctttac aaaaatagtt atgcacatca
    11461 cctgtggata actaagtgaa caaccctgtt tataaatatt taacctactg attttactat
    11521 aaataatttt aaaaattggc agcgttcaaa atttccccta caaaaaatcc actacttgac
    11581 ttattatttt tcctgttttt agttgggtga taatagcctc accacgttca atattttctg
    11641 ttgaagtaag cgttttaccg tctttagttt gggtaattga gtagcctctg gtcaagattt
    11701 tcaatgggct aagtccatca agtttagtgc ataactcttg aaaatgtcgc tgctctttca
    11761 gcattatttt ttcgatagaa taagccaagc gttgcgacat ttttgccacc atcgtttgtt
    11821 gctgataaag ttgataaggt agcgggttgc gttcaaaccg ttgcgtaatg tttttccatt
    11881 tttgctgttt tttgctgagt tgctgctcca tttgccaatg gagtttcagc tccaattgct
    11941 taagcatttg ggattggcgt tcaatctgct tttgcggatg ttggtgaatt aaacggacat
    12001 ttagctcttt ccccacctgc tttttggctg caacaagtgc ataaattgcc tgctcgaggc
    12061 ggtattccat ataatcaaaa cgttgctgtt gcgattgaat ttgtttgctt ggatgctgag
    12121 cattcaggcg taaggggagt tgttggaaac ggttaaattt atggttccaa actcggtcaa
    12181 aggctaaatt cactttatca aactgatgtt gtaattggcg tttcaattca ttttgatctc
    12241 tgctgactaa ttccgcagca gccgaaggcg ttggtgcgcg caaatctgca acaaaatcag
    12301 caatggtcac atcggtttcg tgtcccaccg cactgataat cgggatttgt gaatgataaa
    12361 tggcataagc gacactctct tcgttgaaac accataaatc ctctaatgaa ccgccacctc
    12421 gcccgacaat taatacatca cactcattgc ggcggtttgc cagttcaatc atattcacaa
    12481 tatcttgcgt tgcttctttg ccttgcacga gagccgggta aataaccact gataagctcg
    12541 gatctcgtcg ttgcaaaata tgtaaaatat cttgtaatgc ggctccgctt gaggaggtaa
    12601 taataccaac ggttttaaca aaagtaggaa ttggcttttt atgctcttga gcaaacaagc
    12661 cttgagctga aagttttgct ttaagttgct caaattgctg ctgtaacaag ccttcgcccg
    12721 ccggttgcat actctcaata atgagctgat agtcacctcg tggctcatag agtgtaacac
    12781 ttgcccgcac cagcacctgc ataccgtttt gtgggcgaaa attcactctt acatttttca
    12841 ttttaaacat cgcacaacgc acttgtgctt tgtcatcttt taaagtgaga taccaatgcc
    12901 ccgaaactgg ttggctgaaa tttgagattt cgccggttag ccaaatatgg ctcatttcca
    12961 tttcgagcaa atggcggacg gaatagttga gttgggtaac agttaaaata ttgctcataa
    13021 taatcaaaaa agcgtaaatg tagtagaagt gtaacgagaa atgaaagcga gaggaagctt
    13081 ttgcagtcaa caagcggtta ttttttgctg ttttttggca aataaaacga aaaccctcga
    13141 tgtgattcac tatcgagggt ttggaatgtg gttgcggggg ccggatttga accagcgacc
    13201 ttcgggttat gagcccgacg agctaccaag ctgctccacc ccgcgtctga tgaggctata
    13261 atatatcaat ttgacataat gacaagtaaa atcatacaaa attgctctaa gtgatgtaaa
    13321 ttacaacaga tatagtatca aaatacgctt attgttgtaa aaacaatcaa attatattct
    13381 ggttttattt tgtcgctgtt tttgctattc ttctgtttat ttttcacatt ttattaacga
    13441 tataaggata ttcgatgaat tggaaagcat ataaaaaagc tattgcggca gctagcgtgg
    13501 tagcgattgc aacggtatta gtggcgtgtt cgtcttcagg ccaaaaaggc aaaacaacct
    13561 cttatgatgc ggaaaaagct aaatttggag caaaatataa tggtcgtcac tttatgcctt
    13621 atggcacaca ttttcaagct ggacgtttag gattaaatgc tgctcctgtt aatcaactag
    13681 actttttaca gcagctttct aatgtcagag cctatagtag cttggcagat tcttatgcta
    13741 tcgcttacgg aaaaatcagt cgttggatct catcgggcgg taatattaat gatttagcaa
    13801 aatatggtat tagtactcgt ttaatgcgtg gcgaagatgg ctaccagaat gtgttaatga
    13861 cagggtatta ctcgccggtt atcaaagccc gtagaacgcc tcaggggcaa taccaacacc
    13921 cgatttatgc gatgccgtct agcaaacgtt tttcacgggc ggaaatttac gcaggagcat
    13981 tgcaaggtca gggcttagaa ctggcttata gtaattcaat gctcgataac ttcttattag
    14041 gtgttcaagg tagcggttac gttgactttg gtgatggtcg cttaaactat tttgcttatg
    14101 cagggcaaaa tggctttaaa tatgccagcg ttgggcgttt attagtagaa gatggcgaaa
    14161 ttccgaaaga gaaaatgtca gtgcaggcta tccgtgaatg ggggcaacgt aaccctagcc
    14221 gtgttcaagg tttgttggag cgtaatccat cgtatgtttt ctttaaaaac gatcctaccg
    14281 gtcaggtaaa aggctctgcc ggtgtgccgt tagtaccact tgcatctgtt gcatcagatc
    14341 gtagcattgt gccatcaggt agcgtgttgt tggtcgaaat gccgttgatt gatagcaaag
    14401 gaaattggac cggcaaacac gaaatgcgtt taatggtggc tcttgatgtt ggcggtgcag
    14461 tgaaaggcca tcacttcgat ttatatcaag ggattggcga taaagcaggc catatcgcag
    14521 gtttaatgaa acattacggc cgtgtttggg tattaaatta atacagggta actatgttaa
    14581 aaaaactatc tgccatattc ttacttctac cgagcgccgt gcttgcaaat aatttgcaaa
    14641 atataaccgc ttcaactgag cctaaatata aaatctcaga aatagatgtc agaattttga
    14701 tacgccagct caataatatt gagcaatgta tctatcctga gttagctaaa cccggttacc
    14761 agcaaatcta cgcaaattgg aatctggctg aaaatttaac gatgcaatat tttgaatatc
    14821 agcttctaaa agagttgctc ggagaggaaa atcagaaact gatgcaaaat gatacgcttt
    14881 ctaccgagta tttccattta ctgcattctc gtttaaatca ccaaaaagca aatgtagatc
    14941 ccgaaaaatg cgatacattt aaacctagat ataaagagat ttataaaagt atggaaaatg
    15001 cactcactaa gaaaaatcaa tagtaaaaaa ctcgcagttt tcactgcgag tttcttttat
    15061 ctttcgttat gaatttctaa attggtggct tgttttgccg cctctgcttt tgctttatcg
    15121 tttcgagatc ttgctatact gtctaaatag catttatcta catcacctgt aatatattct
    15181 cctgtaaata cagagtcatc aaagcgatga atagtcggat tttccagttg aatagactta
    15241 taaagtgctt caaggtcttg gaaaatcaat ttatccaccc ctatcatctg tgcaacctct
    15301 tccactgagc gatcataagc cactaattct tcacaagtcg gcatatcaat gccatacaca
    15361 ttcgggtagc gaatttccgg tgcggcagag gcaaaataaa cccgttttgc accagctgct
    15421 cgtgccattt ccacgatttg ttcagacgtt gtacctcgta caatagaatc atcaaccagt
    15481 aacacgcttt tgcctttaaa ttcagaggca atcgcattta atttacggcg aaccgagctt
    15541 ttacgctgtg cttgccccgg cataataaaa gttcgagcta catagcggtt tttaacaaac
    15601 ccttgacgat agggtttata caacatatta gcaatacgta ccgcaatatc atttgaggtt
    15661 tcaggaatcg ggatcaccac atcaatatca tcgataattc gtccccattc acgtttaatt
    15721 ttctcaccta ataattcgcc catatgcact cgtgcagaat atacagaaac gccatcaatg
    15781 acggaatcag gacgggcaaa ataaacatat tcaaaaatac aaggattcag ttttggatta
    15841 tcggcacaaa tttgcgaatg taattgccca tcaaaggtaa cataaatcgc ttcacccggc
    15901 agcacatctc gcacaaattc aaaccccact acatcaagag ccacactttc cgaagcaaac
    15961 atatattcgg ttttaccctc gatttcacgt ttacccagca ctaacgggcg aataccgaat
    16021 gggtcacgga aagcaaccat accgtgtccg ataatcatcg caatgcaagc ataagcacca
    16081 cgaatgctat cattggtttt acgaaccgtt tcaaagatat tgtctgggct taaatgctga
    16141 gtggaataga gatctaaaaa gtaagcaaaa atattaagaa gggattcaga atcagaatta
    16201 gtgttcacat ggcggcgggc ttcgttgtat aagcgagctt taagttccgc attattagtt
    16261 aaattaccgt tgtgaactaa ggtaataccg aaaggtgaat tgacataaaa tggctgggct
    16321 tcagacacac ttgagctacc tgctgttggg tagcgaacgt gaccaattcc aacattgcct
    16381 tgtaatctca ccatatgctc ttgctggaaa acatcgctga ctaagccgtt agctttgcgt
    16441 aagcggaaac gattttcatc gtctatggtg acgatacctg cggcatcttg tcctcggtgt
    16501 tgaagtaatg ttaaaccatc ataaatcgcc tgattcaccg gcgaattccc aataataccg
    16561 acaatgccgc acatatagaa aaacctcttt atttagtcgt gtttaaaaaa ctggaatttg
    16621 cttgtaactg ttcaaagaac cacttcacaa taaagtcaaa atgcggaatt aatagcgatg
    16681 atttccataa ttccgtttgg cttgcttggg taaaggtatc taagaaaaat aaaatagccg
    16741 acacaattaa aataccacgc aatgccccaa aagcaccgcc taaaatacgg tcggtgatag
    16801 acattccgct caaatcaatc actttgccta ataaaccgtt gatcacacca caaacaatta
    16861 aagtcaaaat gaacagaatc gccgctgcaa taccattgcg taaaaattct gaattttgca
    16921 aataaaccga attaatttgt gtgagataac cgcttaaata aggataaaac gagcttgcca
    16981 caaaaaaggc gattacccaa ccaagtagcg ataatgcttc attggtaaaa cctcgccata
    17041 aactgataag cactgaaaaa gcaatgattc cgataacaat taaatcaacc ataacacacc
    17101 ttaaagcgta aagctctcct attctacaaa aaaagaaaac gtttgcgtag cactatttcg
    17161 ctaaaaataa gtgctttatg caaatacaag cggttaaatt cggtaaaaaa tttacacaat
    17221 ccgaccgctt gtaaaaccta gtctgcaata taaccaacat cgtccaacgt tggattattt
    17281 gctccttgtt tagccagctc atcgcaaatc tcattttcac gatgtcctga atgccctttc
    17341 acccaactcc attcaatttg gtggcgttga atttcttggt ctaaagcaac ccataaatct
    17401 ttatttttaa ctggcttttt atcgctggtt ttccagtcat ttttcttcca gttaaaaatc
    17461 catttttgga tcccgttttt catatattgg ctgtcactat tgagttgcac cttacaaggc
    17521 tcttttagca ttgctaaagc ctcaatcacc gcccgcaatt ccattcggtt attggtggtt
    17581 tgaaaatagc ctttgctcac ggttttttcg tacccgttat aacgcagcaa aataccaatc
    17641 ccccctttgc cggggttgcc taaacaagaa ccgtctgtaa aaatttcaac taatttcatc
    17701 atcacgcttt gaaaataaaa gccccaaagc attaactttg gggcagcttt taggctaaat
    17761 tctaaaagtt atcagaatgg agatcaactg attatttttt tccaagttgt ggaatcacgc
    17821 tattattagc cgccaataaa cctgcatcgg tataaactgc taatttacca cgggtatcga
    17881 caatatctaa gttacgcatt gttaattgac cgatacgatc tgccggcgta aacggtgcat
    17941 cttctacttt ttccatactt aaacgttctg cttcgtaggt taagtttggc gattcagtgt
    18001 taagaatagt gaaatcgtta ccacggcgta actcaagcgt gaccgtaccg gtaatcgctt
    18061 ttgccaccca acgttgagcc gtttcacgca acattaaagc ttgcgggtca aaccagcggc
    18121 cttgatacaa taaacgccct aaacgtaatc cgttaatgcg atattgctca atcgtatctt
    18181 cgttgtgaat accggtaact aaacgctcgt aagcgatgtg taataatgcc attcccggtg
    18241 cttcataaat accacgagat ttcgcttcga taatacggtt ttcgatttgg tctgacattc
    18301 ccaaaccatg tctgccacca atgcggttag cctccataat taattcaacg gcatcatcaa
    18361 tacgtttacc gtttaacgcc accggcacac cttcttcaaa ggtaacagaa acagtttccg
    18421 ctttaatttc aactgattcg tcccagaatg ccacgcccat aatcggtttt acgatcttca
    18481 taccggtgct taattcttct aaatctttcg cttcgtgggt tgcacctaac atattcgagt
    18541 ctgtagagta ggctttttcc accgacattt tatagtcaaa accgttttcg attaagaatt
    18601 tagacatttc caagcgaccg cctaattcat caatgaatag ttggtctaac cacggcttat
    18661 aaatttttaa ttttggattg gttaataaac cgtaacgata gaaacgctca atatcgttac
    18721 ctttaaaggt tgaaccatcg ccccagatat tcacatcatc ttctttcatt gccgcaacca
    18781 acattgtgcc ggttaccgca cgaccaagtg gcgtggtgtt gaaatacgga ataccgccgg
    18841 ttgaaatatg gaaagcaccg cattgaattg cggcaatgcc ttcgtgagct aactgttggc
    18901 gacagtcgat taatcgtgca ttttcagccc catattccat cgcttttttc ggaattgcgt
    18961 tgtaatcatc ttcatccggc tgacctaaat ttgcggtgta cgcataaggc actgcccctt
    19021 ttttacgcat ccataacagt gctgctgagg tatctaaacc gcctgaaaag gcgataccca
    19081 ctttctgccc taaaggtaaa gcttctaaaa ttgttgctga catacgaatt cctataaatt
    19141 ttgaaagtaa aaatattcaa acgcaaacgc ttacgttcaa gcaaaatatt ctagctgaaa
    19201 agtagtaaaa attcatctaa aatttagccc gatgatttgc aaattttttg tgaaatttga
    19261 ccgcttataa tttactgaaa acctaaaagc aatagagaaa atcagaatga aaaaactact
    19321 cgtaatccgt aatgataaaa ttggggactt tatggtctgc tttccggcat ttgctatgtt
    19381 gaagcaatca atgccgaatg tggaaattac cgctcttgtg ccaagttata ctgctccact
    19441 tgccgagctt tgcccttcta ttgataagat tattattgat acggcgaata aaaaagataa
    19501 aaatgaattt aaccgtattt tacaagcggt taaaaatgag caatttgatg cggttatttg
    19561 ttttgtttca gactggcata atgccaaact cacctggcaa agtgggatta aataccgcct
    19621 cgctccagca actaaattat tccaattttt atataaccac cgtttaaccc aacgccgttc
    19681 tcaatcagca aaagcggaat ccgaatataa tttggattta gcccgtgctt ttttaagcaa
    19741 acacaatata ccgattgttg aacctcacac gccatactta agtgttgaac agcaaaccgt
    19801 ccaggcacaa aaagcaaaat tatgcgaaca actcaatatt accaccgtta aaaagtgggt
    19861 atttgtgcat agttcaaccg gtggttcggc aaataattta tctatagaac agtatgcaga
    19921 gttaattcaa ggtattttgg cagaatttga ttgctatgtg gtactcaccg cagggaaagg
    19981 cgaaagcgaa aaagctcagc agttagctca acaaatcaat cacaacaacg tggtggttta
    20041 tgataaaaat gaggggttac aagattttac acattcgctt gcgtgtgcag atttgtttat
    20101 tgccggctca accggtccgt tacatattag tggggcgtta aatattccaa ctattggctt
    20161 ctacccgagc cgactttctg ccattccacg ccgttggaaa ccgattaatg atgcgaataa
    20221 acacattgca ttttgcccac cgtctgataa agcctcacaa atgaatttaa ctttaatttc
    20281 tatttctgag gcattaaaaa cgatagtacc gtttattcgg agaatgtgga atactccctc
    20341 tctctgataa aattgctaaa cgcaatttta tctatctctc tcccactaga gggagagagt
    20401 actgaaaagc atcatttccg agtacgattc cacaaatccg catattttac gaaagtagaa
    20461 tgtgccgaaa gaactgccaa taaaaatcct tgcttgccat ctaaaaaacc ggcttttaat
    20521 agatacattt tcacaaaaca gccgatggcg tgagtcacgc catcaaataa gctggctgtt
    20581 ttgcctgcat ttgcccgttg gattgcccac gctttagcgt aacttgccga ttttaccaaa
    20641 tagtggtgaa tatctttata ggtgaaatgc agcaaatcgc cttgtagttt ctggattttt
    20701 gcctcttttg ggtaatgtac tttttcgtga accaattcat caccatattt ggcaaattcc
    20761 gtgcgataca atctcaccac acaatccgga taccaacccg agtggcgaat ttgtttgcca
    20821 aatacttcac ttaagcggct gattttgtaa acggtatttt tttcatcatt tttgaccgct
    20881 tgtaaaatag attgcttcag ttcggctgtc actcgctcat ctgcatcaag ccaaagtaca
    20941 taatcactgg tcacatattg ttgagctaac tgacgctgtt taccaaagcc ttgccaatcg
    21001 gtgttagtgt agaaccttgc gttgtattca gcagcaattt gtggtgtttc atcagtactg
    21061 ccactatcta aaatcacaat ttcatctacc caatctttta ctgtgtcaag gcaagcccgt
    21121 aaatcttgag cttcattttt gacaatcatc gcaacactta atgtcggcat agtttatcct
    21181 tctctctttt tgtcgtgtgt ttttctgcta ttcgttgcat tttactttaa aaatagtggt
    21241 ttttgtgcta ttttctacgc caaattttat caacaaaaca aattaacgga aaaagaatgt
    21301 caattacatt aacaaccaaa caaaaacaat tcctaaaagg cttggctcat catttaagcc
    21361 cagtggtgat gctggggggt aacggcttaa cagaaggcgt gttagctgaa atcgataacg
    21421 ccttagacca ccacgaactg attaaagtta aagttgccgg ggctgatcgt gaaaccaaac
    21481 aattaattat tgatgccatt ctgcgtgaaa ctaaagcggc tgaagtacaa accattgggc
    21541 acattttagt gctttaccgc caaagcgaag agaaaaaaat cagcttgcca aaagcaacta
    21601 aagcgatcta attgcaaaaa tatgtttaaa ttcaaccgct tgtattcaag cggtttttta
    21661 taggactttc tatgtttaaa aaattctctc tttataccct tgcaatgttg ctcattcctg
    21721 tggtgacttg gctggcaaat tggcactggt ctctggcaat tcaatacgct gaatttgatt
    21781 tcgactactt tttatattta atcaccgaaa ccggctccgt accttatgcc atcatcacct
    21841 gtgtggtttt cgccttatta ctggcgaggg tggttcgcaa acgctactct ttaatttttg
    21901 tgattaccgt gtgtgtcgct tcaatggtag ccactcaagc aatcaaaaca gcgatgaaat
    21961 caacctttca agagcctcgt ccatttgtca ctgctctttt ccaagataaa acagacgatt
    22021 tttatcaatt aacacgcgag caacgtgggc ttgccgtaat ggaaaaaatc ggtgcaaatc
    22081 aaaattttgt taccgctcac caagccaaag aagtgggcta ttctttccca tcaggccaca
    22141 ctatttttgc ggtttcttgg ctattattgg tggtaggttt ctgccgtaat atgcgaggac
    22201 aagcggtcgt tttggctcat ttttttgcaa tcagttgggc ggcgttaatg ctgattagcc
    22261 gcttgcgttt aggtatgcac tacccgattg atttattcac cagtagttta attgcgtttc
    22321 taatcaattt agccttattt gtgtggtttg tgccttggtt ggaaagtaaa aaatggtttg
    22381 ctaaaaagcc ttaattggca atttagccaa atcaatatac aatacaaatt attgaataag
    22441 tacctaaaat aaggagctta gaatggaaat gtcgatagaa aaaatagctg aactattaag
    22501 cgataaagaa aaagatgact atccgtttag tattgaggaa agacaatttg ccgcccaggc
    22561 tagtgctgat acttgggagg caatcttaaa taacactatt caaccttttg acttcaaaaa
    22621 ataggcttgc tatgtatcaa gtttttattg cagaaccaaa agacccaaac ttagagaaag
    22681 gcttattgaa acacttcatt aagtcttatc ttactcaaga agaactcgat ttcctgcata
    22741 aaattctcac taatttaccc aacatcagac ctttttgggg cgataccggt tacaaatata
    22801 tcgtcattga taatgtttac ttcttgtatg aagtttccga aagtgaaacg aaagtcattc
    22861 tacttggcac caaatttaat aataaacgga aaacttttaa ttttgcgaat acgaaaaccc
    22921 agcaaaaatc aatgaagaaa tggattaatg atttagcaat ttataaaccg cataaaatca
    22981 atcaatcgca ataagagagc gtaattatgg caatttatta tggcttagat gtgggcggca
    23041 caaaaattga attagccgct tttaatgaaa aactagaaaa actacacagc gaacgtgtgc
    23101 cgacaccgca gacaaattat caagattggc tgacggcaat taaaacgctg gttgagactg
    23161 ccgatacaaa atttgacgaa aaaggcactg tcgggctggg cattccgggc tttgtaaacc
    23221 gtgaaaccgg cattgcggaa attaccaata ttcgagtggc tgacggcaaa acgattctga
    23281 aagatttagc cgaatgttta gggcgtgaag tgcgtgccga aaacgatgct aactgctttg
    23341 ccctgtctga agcgtgggac gaaagtaata agccttattc caccgtatta gggttgatta
    23401 tcggcaccgg ttttggcggt ggttttgtgt ttgacggtaa aattcattca ggcagaatcg
    23461 gaatggcagg cgaagttggg catatgcaac ttaactacca cgcacttaaa ttgctcgact
    23521 gggataaagc cccaatttat gaatgtggtt gtggcaacca agcctgttta gacacctata
    23581 tttcagggcg gggttttgag ttactgttta atgatttagt aggagaaaaa atctcggcga
    23641 aagcgattat cgaacgcttc taccaacaag aaaccaaagt ggtggcattt gtcgaaaaat
    23701 atattgagct aatggcaatc agtatcagca atctgattac gattttagat ccggatatga
    23761 ttgtattcgg tggcggttta tccaactttg attatatcta ccaagctcta ccaaaagcat
    23821 taccaaaaca cttaatgcgt tcagcgaaag tgccggtcat caaaaaagca attcacggcg
    23881 actcaggtgg cactcgtggt gcagcagcat tattcttaaa gtaatgaaca aatttgagag
    23941 agggcaagcg gtcattttta ataaaaatat tgcagccctc tcttttaatt tgccttactg
    24001 cttagtttct tccggtaatt tatataactg atttttatat aaataactgc caagcaatgc
    24061 gtgtgctaac gcctcttttt taaacgattc cggctgttct ttaggggtga gtttatagtt
    24121 agctttatcg tagctaaatc cttctatcgg taaatttggt cgcattacca ccacatcatt
    24181 tccccgcatc atcgcctgtg tcgcatcata ttgcataaag gcacggtttg ggtcaatgtc
    24241 ttgcgttaaa tcatacccta tcatcggata ttgaccactt attcccgcca cagaaagtaa
    24301 tgttgtcggc atatcgagct gactcactaa acggttatcc gttcttggct gaatgtgttc
    24361 gcctaataaa agtgccggaa tatggaagtg ttgaattggc actaaatgct cgccaacggc
    24421 tcttgaatcg tgatctgcaa tcactaaaaa caccgtatct tgccagtact ctgatttttt
    24481 cgctaactca aagaaatgcc cgatagcata atcggcatat tttgccgcat tatggcgagt
    24541 ctgcttcggt tgttcataga gttcaatttt gccgtccgga aattcaaacg gatcgtggtt
    24601 actggaactg aataccaaac taaaaaacgg tttacctgat ttgtgcagtt gattaaaagt
    24661 ttcatttgcc ttatcaaaca gatcttcatc actcacgccc caagttgcgg taaatttagg
    24721 gtttttataa tctttttcat cgataatttg ctggaaacca ttaccgtaga aaaagctcgc
    24781 catattatca aaatgcttct ccccaccata aataaaggaa gtatggtatc cttgacgttt
    24841 taataattcg gcaatactaa aaaagttagt ttggcttttc gtcagtttta ccacagatct
    24901 tgccggtgtt ggtgtaaaac cagccgttac cgcttcaatt cctctcaccg aacgagtacc
    24961 tgttgcataa agattggtaa aataccagcc ttgttctgaa agtttatcta aatttggagt
    25021 gagatttttc cctcctagcg aaccgacaaa ttgagcccct aaactttctt ctaagataat
    25081 cacaatgttt ttaggctttc cttgataagt cgctttattt tgcgtgaggg tgggaatttc
    25141 atctgaaata taatctgaag ctggtcgatt acgaacctgc ttaacaatgt tgaacatttc
    25201 ctccacagac atttttccat actgttcgga agatttatct tcatctttca attgctgaac
    25261 cgcataaagc acggaataac ctgaatttag caccagtgaa ttgacaagcg gatcgcttga
    25321 aaatgccacc attgccggat taatccctcg atgggcaaaa ctggaacgcc caccaacaaa
    25381 aactattgca gcaaccaata aagccagtag cggacgcatt ttccagctcg ggaaatgcaa
    25441 atttttggtt gcccaacccg ataatttcca ataaatgatg agagaaatca tcgcaatgcc
    25501 aatcccacaa ataacagccc ataaatgtcc gttaatcagc attgtgaaca cttctctcgg
    25561 atggaccaaa tactcaatga aaagacgatt tgggcgaagg tcaaaggttt caataaaatt
    25621 cggtgtggcg acttccataa aaagaataaa tacactaccg acagttagcc aaattcttaa
    25681 aacagtctgc caaatcgaac ccagtacatt tttatgaaaa cacaacacgc taaataatgc
    25741 cggtaagcca aatagccaac atagcgaaga tatatcaatg cgaatacctt gtagtattaa
    25801 tggtatccat ccatcaacag cggatactcg atcagattgc caaacgccta acactaaacg
    25861 ggataaggtg aggataacta aattaatccc aacaaatagt aggattggaa atagcacagt
    25921 tcttgattga ctgcgttggt acattttgaa tctcctttta aaaaaatatc ggcatattat
    25981 aattgaataa tgacaggatc gcctactttt atcacaccac tgttttgtgg cacaaggtga
    26041 ataccgaaca ccggcttacc tttttcatcg caatgctttt cttttaaggt tctaaacggc
    26101 tccgatttgg ggtctaactc aagcgtgttt aaatcccgtg taatcaaaat gcaacgagta
    26161 cataatgccg ctttggtaaa tagcacttcg ccaatttgaa cttgttgcca ctgctcttct
    26221 tcaaatgcca cattgccatc aatcacaata ttcgggcgaa aacgagccat ttcgagtgga
    26281 atcggcgacc attgttgcac ttgctcaagc gattttagag acatcaaact caccgggttg
    26341 ctatctgcaa aactcattgg gtgatcggca aaattcgcaa caattcgttg gctttgcgag
    26401 ccaagccaac gtagttgcac agccctacca aaaatttcac tcagccattg attgaccgct
    26461 tctgccgcca ctttggcatt aaaatgtgtt ccccacactt cactactctg ctcttccaca
    26521 aaatcttggt aaagtgcaac gcatttttga ccgcttgtat gggtaatcat tacccctgtc
    26581 gcaatcggga aagccgctag acggtataat tccggatctt tacgggcagt aataaatttg
    26641 ccgttaggct cggctagcat aaattcacgg tcaaaattta agcctttcgg ttcaacaaat
    26701 gcctgtgaaa cttgaatagc ttgagttgat tttatcgggt aaatattgag ctcggtaact
    26761 tgcatagaaa atcctccatt tggaaatagg ataacaatac ctgcaagcgg tcgaaaagta
    26821 aaaggaattt gcaaatccct tgtgagaacg gtaaacttga gcaactttta cagcaatagg
    26881 tcagcaacaa tggcaaagaa acccactcaa gattttgaaa gcacacttaa agaattagaa
    26941 gcaatcgtta cccatttgga atccggtgat ttaccgcttg aagaagccct caacgaattt
    27001 gaaactgcaa tcaaattagt gcaacaaggg caagaacggt tacaaaaagc cgagcaacgt
    27061 attcaaatct tattaaataa aaacgatact gccccactta gcgattacga aagagaataa
    27121 tcacaatgag ctatctatta gcaaccgatc tgactcacct gcaacaacgg attaaccatt
    27181 ttctcgctga aaaattaaaa acaacggata gcgttggttc gcctttagta gaagcaatgg
    27241 cttatgcggt attgctaggc ggtaaacggg tgcgaccgtt tttaatctat gccaccggca
    27301 gaatgcttgg tgtgccgttg gaaaaattag atcatagtgc ggcggcaatg gaggctattc
    27361 acgcttactc gctggttcac gatgatttac cggcaatgga cgatgataga ttacgccgtg
    27421 gcaagccaac ctgccatatt gcctttgatg aagctaccgc tattttagcc ggtgatgcgt
    27481 tacaaagttt tgcgtttgaa ctgctggcaa ccgatccgca tttgaccgac cgagaaaaag
    27541 ttgttcaagt tacagaattg gcaaccgctt ccggtgcaaa aggaatgtgc ttagggcaaa
    27601 gtttggattt gattgcggaa aataaagcgg tgagcttgga agagcttgaa ttaattcatc
    27661 gcaacaaaac cggggcattg attctatcat ccgtgatgat gggattaaac ctttccgaat
    27721 attcgcaaaa tgtagccata aaacaaccgc ttgtaaacta tgccaaagcg attggcttag
    27781 cctttcaggt gcaagatgat attttagatg tcattggcga aacagataaa atcggcaaaa
    27841 tagtgggttc agatgaacac ttaaataaaa gcacataccc gaaattgttg ggcttagacg
    27901 gggcaaaaca aaaagccgaa atgctttatc aaaccgctct ccattcgctg gaacagttgc
    27961 ctttcgatac caccgcatta aaagagttag ctaattttat tgttaagcgt gaaaactaag
    28021 aaaaaaccta gccgaagcta ggttttttag tgattaaacg tgaggctgag cttccggcaa
    28081 tgtgccttca atttcatata ccacatcgcc gtctttaaag aaaacatagc caccgttttt
    28141 cattttggtc cagttttcat ttttggtaag tggctgagtg gcaataatcg tcactttatc
    28201 ggtaattttg gtatattgac taaaatcaat cgacacatca tcatcacgca aggctttgcc
    28261 aaacggtgct ttacggcaaa cgtaatgcag attagttgta caacgggcaa tcatccaatg
    28321 accgttggat aaaacaaaat taaatacccc gtgttccgca attcttgagg tgatttgcac
    28381 cacggcatca aaaatctctt tttcgcttgg tttagccgga tacatctctt ttaattccga
    28441 cacaatacgg caaaatgccg cttcggaatc ggttgtacca atcggctggt agtggcactc
    28501 ctcgcatacc ccaacacctt ccactgtgcc gttatgggca aacacccagt tctcgcccca
    28561 taattcacga atgaaggggt gggtattttc caaattcaca tcaccacgcg tagctttacg
    28621 aatatgtgca ataacattga gcgatttaat ttgatattgg ctgattgctt ctgccatcgg
    28681 cgatgatgct cccgggcggt tatcacgaaa aacccgaacc cctttgcctt caaaaaaggc
    28741 aattccaaac ccatcagtat ggtgatccgt cagcccaccc cgacggcgaa atccatcaaa
    28801 agaaaaagta atatcggttg gcgtattaca attcattcca agtaattgac acataatttg
    28861 cttcttaaaa ccaaataatt tacaacaaaa aataattgtt acatttaaac agattgatta
    28921 gaaaattcaa tgctctttac ataaaaatct tatgctttat tttcatacat tatgctgttt
    28981 aatggtattc ttttttgaat agcgataata gaaaaatcaa gccggcacaa atgactaccg
    29041 aaggccctgc tggtgtatct ttccaactgg ataacaataa accgccactg actgcaataa
    29101 tactgaagaa aatcgcaatc aacaccattt tttcaggcgt tttagcaaag cgtcttgccg
    29161 tagcagacgg aataatcagc agtgaggtaa taattaaagc accgacaaat ttcatactta
    29221 atgcgatagt taatgcggtt aaaatcatca gcaataaacg taagcgagcc acatttaatc
    29281 cttcaatttg agcaagttcc gggctgatgg taatcgacaa caaccgcttc caaaacagca
    29341 ttaaaatcaa acaaattagg gttgctccga ttccgataaa caccacatca gaaaaattaa
    29401 ttgccagtaa atcgccgaat aagtaagaca tcaaatccac tcgtacatta tccaacaaac
    29461 taatggtaat taccccgaga gaaaggctag tatgggcgat aatccccaac acggtatcca
    29521 ccgaataatt ggttttttgc tccaaccaaa ccagcaataa tgcaagaaga atagtcattc
    29581 caattacagc aagatacgga tcgagttcta aaaaaatccc taatgccacg ccgagcaatg
    29641 cagagtgcga aagtgtgtcg ccgaaatacg ccatttttcg ccacaccaca aaagccccta
    29701 gaggtgcggt aataaaggct aacaaaacac cggcaagcca agccggaaat aaaatatcaa
    29761 acatattggt tctcaaaggc aagtaaaaca agcggttatt ttttcggaaa aatttgcaaa
    29821 ttttttgctg atttagaccg cttgtcatat ttatttataa cgttgaatcg ggctggcttg
    29881 atcctgtgct ttcagccacg ccattttttc tttaatctgt ttttccattc cccgctcact
    29941 tgggaagtag aattcggtat ctttcagctc aggcgggaaa taattctccc cggcggcata
    30001 agcgtttggc tcattgtggg catagcgata ctcttcgcca tagcctaaag atttcattaa
    30061 ttgagtggga gcattacgca aatgcgccgg cacatcgtag tcttttgcct ctttagcgag
    30121 gcgctttgct tcattaaaag cttgatagac cgcattgctc tttggggcaa ctgccaaata
    30181 aatgatcgct tgggcaatcg ctctttcacc ttcataagcc cccactcggg taaagcaatc
    30241 ccaagccaca atcgcaattt gcattgctcg agggtcggca ttaccaatat cttcagaagc
    30301 aatcgcaagc agccttcttg ccacataaag cggatcacca ccggcggtta aaattcgggc
    30361 ataccagtat aatgctccat cagccgatga gcctcgaatg gatttatgta acgcagaaat
    30421 gagatcatag taacgatcac cgcctttatc aaaacgagct tgtcgttcgc ctaacacttc
    30481 ggtcagcaaa cttttattca gcactttccc tttagctgaa tcttgtgcca tatctaccat
    30541 taattccaaa cagttcaagg caaaacgggc atcaccatta acataatcag caagcaatgc
    30601 cagtacatca tcttcaagta ccaaagtttc attgcctaaa ccacgttcgg tatcggctat
    30661 cgccatttgc aaaattttta gaatttcgac cgcttgtaac ggctttaaaa tataaattct
    30721 ggctcgggaa agcagtgcgt tatttagctc aaaagaggga ttttcggtag tcgcaccaat
    30781 aaaaataata gtgccgtcct caatatgcgg taaaaacgca tcttgctggc ttttgttaaa
    30841 gcggtgaact tcatccacaa aaagcaacgt tcgtctgccg gcttggcggt ttaatttggc
    30901 ttgttcaatc acctctcgga tctcttttac accgctggtc acagcggaaa tacgttcaac
    30961 ttccgcatca agatgatggg cgataatttc agctagggtc gtttttccgg tgccgggcgg
    31021 tccccaaaaa atcatagaat gactatgtcc ggcttcaatc gctctgcgta acggtttgcc
    31081 ttcgccaatt aaatgagatt gcccgacata ttcagccaag tttcgaggtc gcattttggc
    31141 tgcaagcggt cgaaaatctt cactaaaatc aaaagacaaa ctactcattt taacctctta
    31201 acgtaaccgc agttggcgac gaatatgacg cattaataag aaaatccaag accaaagcac
    31261 accactgatt acagcaccta acaattcctg tgaattaaat tcggcactgt gtaaaatgta
    31321 ttcaatcacg aaaataaaga aacggatcag cacaatatat gccattacta ataggctttg
    31381 tagccatagc gataagtttc gcagaatcag atggtatttc gcaacaaaat aaatcgccac
    31441 cgataacact aaggcgtgga tgcctaaaat cgagccaaga atcagatccc agacgatgcc
    31501 ggcaataaaa gccgtcccca cactcatttt atcaggtaat gccaatgccc aataaattaa
    31561 caccaaaacg acccaagtag ggcgtagccc ttggaatcct accggccaag gcataatctc
    31621 aagtacaaaa gcaaccacaa aaatcgcaat tatcacaagg atctgaaaaa tcgggtttgt
    31681 tctcattatt ccgctccttc ttccgtatga tagttttgtt cattttccgc ttctggttgt
    31741 gctgccggat tctcatttat ctcatcattc tctatttgtt cttcttttgc ctctagctgc
    31801 acttcagttt tcttgttaga catctgtttt aaacgttcaa atggattcac gctattacgt
    31861 ctttcttcaa caacttcacg tacttgcgct ggcgacaagc tttgggagta gtttttctct
    31921 tccgccgtcg gccaaagcag taataagtaa cgtaagcgat caaatgaggc taacggacga
    31981 gcaacaattc tggcaaattg acttttggta tcattttcaa ccgtttctac aatcgccacc
    32041 ggatatccct cagggaaacg tccacctaag cctgaagtca ccagcacatc accttttacc
    32101 acatcaatag aacgaggcaa gttatcaatg accaattcat tattcacccc tgtaccactg
    32161 gcaatgccac gtacatcatt gcgtagcact tgaacaggaa tagcatgagt aatatcagag
    32221 agcaataaaa cacggctaga tttttcccct acagaaataa cttgtccaac aacacctctt
    32281 tcatcaataa taggttgccc gacaaaagca ccgtctaaac gcccttgatt aatcactact
    32341 tgctgacgat aagcatccat ctcagcagct aatacttcag caattttttt atactcatct
    32401 tgccgaagcg gagaactcaa taacaatctt aaacgctgat tttcaacctt tagctgatca
    32461 agcaataata aatcggcact tttttctctt agctgctctt ttaataaatt attctcaagc
    32521 tgtaatttat tattatcaat aaaattgcca cttaccccat ctaaaattga acggggggta
    32581 ttagcaaaat aatataatcc acttaccgcg gtttctaata gattacgcgc ttgaatcatt
    32641 aaagagctac gcccatcgga aataatcagc ataatagaaa atatcactgc gataatcagg
    32701 cgcatcccta aagagggagc tttagcaaaa ataggtttca ttagagaaat atatgtgaat
    32761 ttattgggaa tctataacga aaattgacaa tagaatcaat ccattgccaa cctccattta
    32821 aacagctgct aagagaaatg tattaatcat caatactaaa tacatcacca ccgtgcatat
    32881 cgatcatttc taatgcttta ccaccaccac gagctacaca agttaatgga tcttctgcta
    32941 ctacgacttg cacgccagtt gaatcagaaa gtaaacgatc taaattatgt aataatgcac
    33001 cacctcctgt taacaccata ccgcgctcaa aaatgtctgc tgccaattca ggtgggcatt
    33061 gctctaagac tgatttaact gcctctacaa taccatttaa tggttgttca attgcttcta
    33121 atacatgtct tgagttaagc tcgaaagtac gaggagcgcc ttcagctaaa ttgtgtccgt
    33181 gtacttccat tgttttaaca tcatcatcgg attcaatctt agcactagca atttcttgtt
    33241 taattcgctc tgccgttgct tcaccaatag cagaaccaaa atgacgacgt acataagcaa
    33301 taatagcttc atctaactta tcaccaccaa tacgcacaga agttgaatac acaatgccgt
    33361 ttaaagaaag cactgccact tcggttgtac cgccaccaat gtcaattacc attgacccca
    33421 ttgcttcgtg aaccggcaaa cctgcaccga ttgcagccgc cattggctct tcaattaaat
    33481 agacttcacg cgctcctgct ccaattgcag attctttaat tgcacggcgt tccacttgtg
    33541 ttgcacctgc tggcacgcac actaatacac gagggcttgg gcgcataaag ttattactat
    33601 gtacttgttt aataaagtgt tgcaacattt tttctgttac aaaaaaatcc gcaatgacac
    33661 catctttcat tggacgaatc gccattatgc tttttggtgt acggcctagc attaattttg
    33721 catgtgagcc taccgccgca atacttttta gcgatcccat acgatcttga cgtacagcaa
    33781 ccactgaggg ttcatctagc acaatacctt gacctttaac ataaaccagt gt
//
LOCUS       DANLZD010000004        33820 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.004, whole genome shotgun sequence.
ACCESSION   DANLZD010000004 DANLZD010000000
VERSION     DANLZD010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 33820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33820
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.004"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            166..1134
                     /gene="mdh"
                     /locus_tag="PXE26_000120"
     CDS             166..1134
                     /gene="mdh"
                     /locus_tag="PXE26_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDL5592747.1"
                     /translation="MCQSKKVALLGAAGGIGQSLALLLKLNLPAKSELSLYDISPVTP
                     GIAVDLSHIPTDVKVTGFAGEDPTEALKDADVVVISAGVARKPGMTRADLFNTNATIV
                     HNLVEKAAKVCPKACIAIITNPVNTIIPIAAEVLKKAGVYDKNKLFGVTTLDVIRANT
                     FVAEAKDVNVKYVRVPVIGGHSGTTILPLLSQATVNGLKLEFTQEQIEQLTHRIQNAG
                     TEVVEAKAGGGSATLSMAQAGAEFALGLVRALIGEDVIRYAYVDNANGETSPAFFAYP
                     IRLGTNGVEKVLPIGNLSEFEKDQLEQLIPVLNDEIQLGQTFNKNA"
     gene            1211..1507
                     /locus_tag="PXE26_000121"
     CDS             1211..1507
                     /locus_tag="PXE26_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592748.1"
                     /translation="MKKHHIIILTLASASVVACSSNTPVQVVNGDKNIDYSQPKTIYI
                     SETNTQPPALTKQEKIKPSNATALCFNGSYSTDIQNPCKKDGGVKQYFAHHHAN"
     gene            complement(1555..1731)
                     /locus_tag="PXE26_000122"
     CDS             complement(1555..1731)
                     /locus_tag="PXE26_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5363 domain-containing protein"
                     /protein_id="HDL5592749.1"
                     /translation="MMSEQTEKKGWFKKALEKYDAFCDELGVNQGACRGCVPVVKFDP
                     EPEKEQPEKSENKT"
     gene            complement(1816..2307)
                     /locus_tag="PXE26_000123"
     CDS             complement(1816..2307)
                     /locus_tag="PXE26_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HDL5592750.1"
                     /translation="MPSFDIVSEITMHEVRNAVENANRVLSTRYDFRGVEAVIELNEK
                     NESIKLTTESDFQLEQLIEILIGSCVKRGIEHSSLDIPTESEHHGKLYSKEIKLKQGI
                     ESDMAKKITKLIKDSKIKVQAQIQGEQVRVTGKSRDDLQAAIQLVKGADLGQPFQFNN
                     FRD"
     gene            complement(2323..3186)
                     /gene="serB"
                     /locus_tag="PXE26_000124"
     CDS             complement(2323..3186)
                     /gene="serB"
                     /locus_tag="PXE26_000124"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HDL5592751.1"
                     /translation="MTNTIFIYSKTLNEREIEQFSQQTAAILLKQAVYLDYKIAFFST
                     NLTACELRETAQKINADISDLTIIPTLNQGGLLLMDMDSTAIKIECIDDIAKLAGTGE
                     VVSAITASAMRGELDFEQSLRKRVGTLENASESILQKVRENLPLMDGFEQMVAILKEH
                     GWKLAIVSGGFDYFADYLKQKYGLNFAVSNQLEIIDGKLTGKVLGKVVDAQHKADTLQ
                     NLATTFNIPPNQWVAVGDGANDLPMLKTASLGVALHAKPKVQAQADFVVNFGDLTALC
                     LLLNANHLFQH"
     gene            3272..3931
                     /locus_tag="PXE26_000125"
     CDS             3272..3931
                     /locus_tag="PXE26_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtjB family periplasmic protein"
                     /protein_id="HDL5592752.1"
                     /translation="MYISREKITKTLLLAGITLLCCGIVAVILMGVNQFKLGSQLASI
                     NQVSNLSHLLVRQQANIFSFLLVKNAKTDELVDALDSFAKEDFIIDANIYSPNGVLLA
                     QSQNAKDLKVLLDSEQSAKTQQIVEPIFSQQALVGFLRVTFDAEYGQTTKARVEQQFH
                     QLYGEIIILLLTGILLASSINYYFRRKIHHVQISPKPLMSQVKTQTQRFHSRRRWIKR
                     K"
     gene            4041..4259
                     /gene="infA"
                     /locus_tag="PXE26_000126"
     CDS             4041..4259
                     /gene="infA"
                     /locus_tag="PXE26_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HDL5592753.1"
                     /translation="MAKEDCIEMQGTILETLPNTMFRVELENGHIVTAHISGKMRKNY
                     IRILTGDKVTVEMTPYDLSKARIIFRAR"
     gene            complement(4330..5523)
                     /locus_tag="PXE26_000127"
                     /pseudo
     CDS             complement(4330..5523)
                     /locus_tag="PXE26_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252099.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
     gene            complement(5523..5891)
                     /locus_tag="PXE26_000128"
     CDS             complement(5523..5891)
                     /locus_tag="PXE26_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/DsrF/TusD sulfur relay family protein"
                     /protein_id="HDL5592754.1"
                     /translation="MSNSVQKLLFIINSAPYGNETFFSALRLALQIQEQHKANTEIKL
                     FLMSDAVTAGLAKQNPAEGYHIQQMLEILTAQGANVKLCKTCTNARGITDLPLADGVE
                     IGTLIELADWTIQADKVLNF"
     gene            complement(6011..7306)
                     /locus_tag="PXE26_000129"
     CDS             complement(6011..7306)
                     /locus_tag="PXE26_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDL5592755.1"
                     /translation="MLEKLFQLKAKGSNVKTEIIAGITTFFTMVYIVFVNPSILGVAG
                     MDTQVVFVTTCLIAAFGTIAMGLFSNLPIALAPAMGLNAFFAFVVVQKLGYSWQVGMG
                     AIFLGSVGLFLLTVLQVRYWFMSAIPLGLRVGIGAGIGLFIALIGFKNMGLVVPNPAT
                     LVALGDLHDPKVLMGILGFFIIVVLAAKGIHSGVLISIVIVTALALAFDPAVSFNGIM
                     SMPPSLGAVVGQVDIAGAFDVALLGMIFSFMLVNLFDSSGTLIAVTTKAGFADEQGRF
                     PKMKQALLVDSTAAMAGSYMGTSAISTYIESGSGVSVGGRTGLTAVVVGILFLLTIFF
                     SPLAGLVPAYATAGALVFVGILMASSLIEVKWDDLTEATPAFITTAMMPFTYSITEGI
                     AFGFISYCVMKAFTGRWKEINLSVLVVSLLFIAKFVWVG"
     gene            complement(7403..8389)
                     /locus_tag="PXE26_000130"
     CDS             complement(7403..8389)
                     /locus_tag="PXE26_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDL5592756.1"
                     /translation="MSNIHLAIAADFTLAEKLLEALANQDLGIENISAVELEPFGEEQ
                     NLRFGAKAVAQYALDEVNWAEFSHVLFAGKMAQAEVLAEAVKAGCVILDLYGITALIG
                     DVPVVVPSVNDENVANLRERNIVALANPQISQLALALKPLLNEPLKQVWVTSLLPSAY
                     FGDEKVKELAGQTARLLNGIPFDENAERIAFDVVPANVQGEEKSLPFSKAFELQIAKV
                     LPNLTACTTFHSVQVPVFYGVSQMVSVQSEYQLDANALSEAWKAENWLNFNENSVITA
                     VKNGENEEQNALEISQLLAKSEQEVQFWTVADEQRFSLAFLAVKLLKLVLAY"
     gene            8630..8905
                     /gene="ybfE"
                     /locus_tag="PXE26_000131"
     CDS             8630..8905
                     /gene="ybfE"
                     /locus_tag="PXE26_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA regulated protein"
                     /protein_id="HDL5592757.1"
                     /translation="MAKQDSDCITLDLFATVPKVGRPRTNPLDREQQLRINKRNQLKR
                     DKSSGLKRVELKLHSNLVKLLEEQASEQGVSRGQLIETILNNYLTNR"
     gene            8911..9435
                     /gene="fldA"
                     /locus_tag="PXE26_000132"
     CDS             8911..9435
                     /gene="fldA"
                     /locus_tag="PXE26_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HDL5592758.1"
                     /translation="MAVVGLFYGSDTGNTENISKMIQKKLGAELIDIRDIAKSTKEDI
                     EAYDFLMFGIPTWYYGESQADWDDFMPTLKEIDFNGKVVAIFGCGDQEDYAEYFCDAM
                     GTVRDVVEPNGGVIVGHWPTAGYTFEVSQALVDDDTFVGLCIDEDRQPELTTERVNKW
                     CEQLKEEMCLDQLA"
     gene            9471..9911
                     /gene="fur"
                     /locus_tag="PXE26_000133"
     CDS             9471..9911
                     /gene="fur"
                     /locus_tag="PXE26_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HDL5592759.1"
                     /translation="MSEANIKRLKEVGLKVTEPRLTILALMQDIRDEMQHFAAEDIYK
                     ILLEKGSDIGLATVYRVLNQFEEAGILTRHNFDANKAVFELNMNHEHDHIICMDCGKV
                     FEFKDPDMERRQREISEKHGMELTNHSLYLYGKCSNLTNCDEKK"
     gene            9994..12660
                     /locus_tag="PXE26_000134"
     CDS             9994..12660
                     /locus_tag="PXE26_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HDL5592760.1"
                     /translation="MTMEENTHTVVDAQIRQPRKISPFWLLPIVAFIIGALLFFQILK
                     EQGETITIRFSKGDGITAGKTAIRYQGLQIGQVKRVYFVDNLKEVEVQAEINPEAKSI
                     LRKQTKFWLVQPSASLAGVSGLDAIVSGNYITLLPGEGDFVDEFIAEEDPPAITVSDG
                     DLLIRLISDDIGSITVGASVYFRKVPVGNIADYRFTKDQKKIEIDVVINQKYAHLVKK
                     ESRFWNISGISADVNLQGIKINMDSLASVVQGAVAFDSPDNMEIAEQGQKFELYPDLK
                     SAKRGIEINVKLPLTHNLKINETGVFHQNVQIGMLSQLKLPQVKDNGVPQQESGQHKQ
                     IDGVLLIDPSYENLLRSQTKILLKEPKFSLNTEQLTKVGELLRGVYFEVHPGEGEPQS
                     EFVVQNEADYLLSLPNLLSFSLIAPQAYGVDTNQGIYYSDVQIGEIVKRSLELDKVRF
                     DVIIYPPYRNLIGSNSKFVAISNIDMSVGLDGLRVHAGSPSEWLKGGVRLINGKNDGS
                     PKKQYALYKDIESAESGMATLDKKATTTLSADSLSGISEGSLVLYRDFQVGEVLKITP
                     KQQKFEVELFIQPNYRHLLTEKSRFWIEPATSVDVSLKGVNITTAPLMRTLKGAISFD
                     DGGSKGNKTLYASKEKATSGNTYLTLIAKDASKLSEGMDIKYMGLTVGQIEKLELQNA
                     KKQIKATAYIQRKYYPLIAKAGSKFNVISPEISTSGFKNLDAALQNYITVDVGSGQAQ
                     NQFVLADTDTVKTTYANGFPIIVETTNANGIQPEAPVLYRGMQVGIVSRLGLSELGDR
                     VLIYVNIQDKYKHLVRTNTQFWQASGYTMDVSLQGVSMNSGTMSQLLNGGIEFSTPYT
                     KVVKPQAQPNRRFFLQRKLPDEAPAWDQGIAE"
     gene            12678..13187
                     /gene="luxS"
                     /locus_tag="PXE26_000135"
     CDS             12678..13187
                     /gene="luxS"
                     /locus_tag="PXE26_000135"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005706864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HDL5592761.1"
                     /translation="MPLLDSFKVDHTKMNAPAVRVAKTMTTPKGDTITVFDLRFCRPN
                     IDILPVRGIHTMEHLFAGFMRDHLNSEQVEIIDISPMGCRTGFYMSLIGSPSAEEVVK
                     AWTASMEDALHKIPDVSAIPELNEYQCGSYKEHSLKEAHQIARNVLAAGIGINRNEDL
                     ALDEKLLNP"
     gene            13256..15103
                     /locus_tag="PXE26_000136"
     CDS             13256..15103
                     /locus_tag="PXE26_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5592762.1"
                     /translation="MFEKLFKWFEARVETYPNEMPKTPKSGLIPFIYDATKGMRFYIL
                     LLTVLVAAVGIIEAVLFRFMGDLVDWVNKYSPTELWAEKGWTIIGMFFIALLAVVFVY
                     LASSIRFQSLQGVFPMRLRWNFHRLMLGQSLGFYQDEFAGRVSAKVMQTALSVRDVIM
                     TCADMLVYVLVYFTTSSVILLQLDGWLFVPFILWVISLAATIIYFVPKLAQAAQEQSD
                     ARSLMTGRITDAYANIATVKLFSHGNRESAYAKESMEGFMVTVHKQMRLVTVIETVTN
                     LTSMALIISTAGIGLWLWGSSVVTAGAIATSTALALRIKGLSQWIMWEFARLFENLGT
                     VQDGMITLSKPHNVVDKIDAKPLNVTKGEIKFENVDFAYDPKKPLLKDFDLTIKPGEK
                     VGLVGRSGAGKSTLTNLLLRFYDIQDGSITIDGQNIRDITQESLRSQIGLVTQDTSLL
                     HRSVRENLMYGRPNATEEEMIKAVEQAAASEFIPNLQDAKGRTGFDAHVGERGVKLSG
                     GQRQRIAIARVMLKDAPILLLDEATSALDSEVEVAIQENLTQLMEGKTVVAIAHRLST
                     IMAMDRLIVLDKGEIVEQGTHEELLAQNGVYARLWAHQSGGFLPENTDI"
     gene            15290..16639
                     /gene="dnaA"
                     /locus_tag="PXE26_000137"
     CDS             15290..16639
                     /gene="dnaA"
                     /locus_tag="PXE26_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HDL5592763.1"
                     /translation="MEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQASSENGELTLY
                     AQNQFVENWVKDKFLSEITELARFLAKNDNLVVTLKVGIKPTEQPKVSPNLKNESSEF
                     SNTGFKTGLNPNQTFDNFVQGRSNQLAKLVAQQVVDNLGESHCNPLSFYAGTGLGKTH
                     LLHAIGNELVKRTPGTRVLYIHLERFYRDIIKAINSSNNDAEKIKKFYRSLDVLMIDD
                     IQFLANKPKVQEEFLHLLNALFEQRKQIILTSDVLPKNIDKIDTAIKSRLSGGISATI
                     EPPELETRVAILRQKALERGADLQEDAAYLMGQKLRTNVRELEGALNRVIAWQKLTLR
                     PITVDAVRETLQDLFASFDYLITIENIQRIVAEYYGIKVADIKSKSRARSIARPRQMA
                     MALAKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTESGIQEDYIHLTRKLSS"
     gene            16658..17761
                     /gene="dnaN"
                     /locus_tag="PXE26_000138"
     CDS             16658..17761
                     /gene="dnaN"
                     /locus_tag="PXE26_000138"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HDL5592764.1"
                     /translation="MQITITREQLLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSL
                     TGTDLEVELTTQAQLLQAVDFAGKFTIPAKKFLDISKSLPDDSVISVQFEEDKAIIKA
                     GRSKFSLATLPASDYPNLMDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMK
                     FETEGNLLRTVATDGHRLAVCTMVLNQELLTHSVIVPRKAVLELSRLVASNDETVRLE
                     IGSSNIRITMNGIVFTSKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSN
                     EKFRGVRLTLSNNLLKITANNPEQEEAEEIIDVAYDSPEMEVGFNVSYVLDVLNTLKC
                     QRVRFSLVDSSSSCLIEDCDNSSAEYVIMPMRL"
     gene            complement(17824..18444)
                     /locus_tag="PXE26_000139"
     CDS             complement(17824..18444)
                     /locus_tag="PXE26_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDL5592765.1"
                     /translation="MSNEYLNKTEEQQFEDAKNWFKENGTPILVAIILACAATAGWNF
                     WKNHQLETAQKTSASYQSVMESYLQNPSKNQPLVEKFIADNKDSSYAAFAQFEVAKQA
                     VEKGNFSAAKTALQSVLTYSDSTLQSIARFRLAQIDFQLKSYDEALASLAQIQDKAWE
                     LRKQILTGDILAAKGDIPAAKSAYEQAKTTANPQEQTLIDVRLNNL"
     gene            complement(18454..19725)
                     /gene="hisS"
                     /locus_tag="PXE26_000140"
     CDS             complement(18454..19725)
                     /gene="hisS"
                     /locus_tag="PXE26_000140"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HDL5592766.1"
                     /translation="MAKTIQAIRGMNDCSPSESPLWQWVEQKVRNVLASYGYSEVRMP
                     IVESTPLFARAIGEVTDVVSKEMYTFWDNDEQLTLRPEGTAGCVRAAIERGWIYNNEQ
                     RLWYMGPMFRHERPQKGRYRQFHQAGVEVFGIANPEIDAELIILTARLWKELGIDQHV
                     SLQLNSIGSLEARANYRSALVKFLENHTALMNEEEKERLVKNPLRILDTKNEALQNVL
                     NDAPKLLDYLDDDSREHFTQLCALLDAMGIRYEVNPKLVRGLDYYNKTVFEWVTSALG
                     SQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERLVLLVQEVNKEIDLPKTVDVYIVF
                     SGEGATLNAFQLAEQIRSELPHVGVMTHCSGGKFQKQFKRADKVEAQIALVIGESEVA
                     EKQVVIKDLRSGAEQITIAQSELIAELSKRF"
     gene            complement(19731..20843)
                     /gene="ispG"
                     /locus_tag="PXE26_000141"
                     /gene_synonym="gcpE"
     CDS             complement(19731..20843)
                     /gene="ispG"
                     /locus_tag="PXE26_000141"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HDL5592767.1"
                     /translation="MIHQSPIKRRVSKKIYVGNVPVGGDAPITVQSMTNTRTTDVEAT
                     VAQIKSLERVGADIVRVSVPTMDAAEAFKAIKQQVSVPLVADIHFDYRIALKVAEYGV
                     DCLRINPGNIGNEERIRTVVDCARDKNIPIRIGVNAGSLERDLQEKYGEPTPQALLES
                     ALRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARAGSV
                     KSAVGLGLLLAEGIGDTLRVSLAADPVEEVKVGFDILKSLRIRSRGINFIACPTCSRQ
                     EIDVIATVNELEQRLEDIITPMDVSIIGCVVNGPGEALVSDLGVTGSNKMSGFYLDGV
                     RQKERFDNAKLIDQLEAKIRARVAQQHNRIDIEQIG"
     gene            complement(20944..21942)
                     /locus_tag="PXE26_000142"
     CDS             complement(20944..21942)
                     /locus_tag="PXE26_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4115 domain-containing protein"
                     /protein_id="HDL5592768.1"
                     /translation="MTESVNSTQAGTALSLGQQLKAAREALNLSITDVAQKTNLKKSH
                     IESLENDIFILQNVAPTFVRGYVRNYVKFLRLPESLISSVNYGEVTIPKEVTKVSSVK
                     PSSNSQGKTLKYLTVLVLLAALGMTLLWWWQGYQKEQENREQFVSSAPVAEVANTATN
                     NDASAQTSVPVQQPIQVSEQPAQVAETVVAAEPALTEKVEPTQAASSPVTQEDVKVVE
                     EVKQADATTAQVEAVNVLQQSQSEQAPTEQPVAVTNDELRIEITGSQSWITVRGAKNK
                     RLAEKLYNNGETLSFNENEQYRLTIGAPANVKVYYKGQEVPLKIDGRVARIHLPLQ"
     gene            complement(22110..23489)
                     /gene="argH"
                     /locus_tag="PXE26_000143"
     CDS             complement(22110..23489)
                     /gene="argH"
                     /locus_tag="PXE26_000143"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HDL5592769.1"
                     /translation="MALWGGRFTQQADAKFKYFNDSLRFDYRLAIQDIEGSIGWAKAI
                     TSVGILTVAELEQLIAALKEVRAEVESNLTIILKDDAEDIHSWVESKLIEKVGDLGKK
                     LHTGRSRNDQVAVDIKMWCKVQAVALQERIRALQERLVSVAEENQESVMPGYTHLQRA
                     QPVTFAHWCMAYYEMLERDFSRLSDANKRMSTCPLGSGALAGTAYGIDRDLLARDLGF
                     EEATRNSLDSVSDRDHILELLSTASISMMHLSRFAEDLIIFNSGESGFLEMSDRVTSG
                     SSLMPQKKNPDACELIRGKSGRVFGALNGLLTTLKGLPLAYNKDMQEDKEGIFDALET
                     WQACLEIAELVLVDIQVNTERTREAAQQGYANATELADYLVAKGVPFREAHHIVGEAV
                     VYAISKKEPLEALSINEFQQFHHSIGDDVYPILSLESCLEKRCAKGGVNPQRVAEAIA
                     VAKANLASK"
     gene            complement(23606..24769)
                     /gene="mnmA"
                     /locus_tag="PXE26_000144"
     CDS             complement(23606..24769)
                     /gene="mnmA"
                     /locus_tag="PXE26_000144"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HDL5592770.1"
                     /translation="MTTQLTSKTYDTHFPKLTPEQLAENSKKKVIIGMSGGVDSSVSA
                     FILQQQGYQVEGLFMKNWEEDDDTDYCTAAAELADAQAVADKLGMKLHKINFAAEYWD
                     NVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADYIATGHYVRRTSDDQD
                     AKLLRGLDENKDQSYFLYALNKKQIGQSLFPVGEIEKPIVRAIAEDLGLATAKKKDST
                     GICFIGERKFKDFLARFLPAQPGEIRTVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGL
                     SEDPFYVVEKDLINNVLIVAQGHDNSALLSSGLIAKQLTWVDMQPLRENLRCTVKTRY
                     RQADIACEIQVIDDETIRVMFDEPQIAVTPGQSAVFYLGEVCLGGGIIESQLK"
     gene            complement(24880..25191)
                     /locus_tag="PXE26_000145"
     CDS             complement(24880..25191)
                     /locus_tag="PXE26_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HDL5592771.1"
                     /translation="MPNFGLSERATKTITDILAKYPEVEQAIIYGSRAKGNYREGSDV
                     DLTFKGKDLTYDIVKRIWGDLDDSDSPYLFDLSIYHQLTNANFIEHIDRVGKVFYQRE
                     L"
     gene            complement(25173..25589)
                     /locus_tag="PXE26_000146"
     CDS             complement(25173..25589)
                     /locus_tag="PXE26_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
                     /protein_id="HDL5592772.1"
                     /translation="MNRDIRWKQRFDNYKKSVSYLQAEAEKYADTDIDVIKKGIIQSF
                     EITHELAWKLMQDILKWEGEVDIYGSKTASRLAFNRGLITQGEVWLEMIKSRNITVHT
                     DDETILTEEFNKIIKAYLPLFIEFEQRVETLCQTLD"
     gene            complement(25591..25836)
                     /gene="nqrM"
                     /locus_tag="PXE26_000147"
     CDS             complement(25591..25836)
                     /gene="nqrM"
                     /locus_tag="PXE26_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Na+)-NQR maturation NqrM"
                     /protein_id="HDL5592773.1"
                     /translation="METVLLTFGFFVAVIFAMSIGFIVKGKTIKGSCGGITALGMKKM
                     CDCEEPCDNLKSKIADGTADPEEVARFNKEPQFYEVK"
     gene            complement(25849..26883)
                     /locus_tag="PXE26_000148"
     CDS             complement(25849..26883)
                     /locus_tag="PXE26_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HDL5592774.1"
                     /translation="MKKFFLLLIAFFTLSACEKAPEQITLSGKTMGTTYTVKYIDNGE
                     VENLISPEKMKNELDGLLIEVNNQMSTYQQDSEISRFNQAKQANQAVEISQDFAKVVQ
                     EAIRLNKVTEGALDVTVGPLVNLWGFGPDKRLNKVPSDEQIAERSAYVGIDKILLEMS
                     SKPKLTKSAANLYLDLSSIAKGFGVDKLAEHLETIGVSNYLVEIGGELRGKGKNLQGL
                     DWRIAIEKPVMTQGQAAQITVPLHNLAMATSGNYRNYFEDEKGNRLSHIIDPKQLRPV
                     NHNLASITVFAPTTMTADGLSTGLFVLGAEKALAVAEREKLAIFLIVKNGDKFETQMS
                     SEFSKLIQSQ"
     gene            complement(26932..27225)
                     /locus_tag="PXE26_000149"
     CDS             complement(26932..27225)
                     /locus_tag="PXE26_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HDL5592775.1"
                     /translation="MIDLTESQRQQVLDIFKKYLPDTPVWVFGSRIKGTAKAYSDLDL
                     ALITKQPLTIRQQTELELAFTDSDLPFTVDLIDWASCNESFKQIILQRYEVLI"
     gene            complement(27218..27652)
                     /locus_tag="PXE26_000150"
     CDS             complement(27218..27652)
                     /locus_tag="PXE26_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
                     /protein_id="HDL5592776.1"
                     /translation="MEQLDITVLENAFNSLEKTIVSLENQAWFNRQEAIIQDTLIAGA
                     IQKFEFVYELSIKMLKRQLKNIESNDTDIDSTEFRDILRMAAQYGLIESPEVWLDYRK
                     MRNITSHTYDQNKAQQVYNGISNFLESTYFLVKQLQKRNSYD"
     gene            complement(27764..28993)
                     /gene="nqrF"
                     /locus_tag="PXE26_000151"
     CDS             complement(27764..28993)
                     /gene="nqrF"
                     /locus_tag="PXE26_000151"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit F"
                     /protein_id="HDL5592777.1"
                     /translation="MDSNFIFGIIAFTALVLVLAVIILFAKSKLVDSGDITISINNDP
                     EKGITLPAGGKLLGALASKGIFVSSACGGGGSCGQCKVQVKSGGGEILPTELSHISKK
                     EAKEGWRLACQVNVKSSMDVELPEEIFGVKKWECTVISNDNKATFIKELKLQIPEGEE
                     VPFRAGGYIQIEAEPHTVHYKDFDIPKEYHEDWDKFDLWRYTSKVDEHIIRAYSMASY
                     PEEKGIIMLNVRIATPPPRNPDVPPGQMSSYIWSLKPGDKVTISGPFGEFFAKDTDAE
                     MVFIGGGAGMAPMRSHIFDQLKRLKSKRKMSFWYGARSEREMFYVEDFDGLQAENDNF
                     KWYVALSDPLPGDREDYFRGFIHNVLYENYLKNHEAPEDCEYYMCGPPVMNAAVIGML
                     KSLGVEDENILLDDFGG"
     gene            complement(29004..29600)
                     /gene="nqrE"
                     /locus_tag="PXE26_000152"
     CDS             complement(29004..29600)
                     /gene="nqrE"
                     /locus_tag="PXE26_000152"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005529392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit E"
                     /protein_id="HDL5592778.1"
                     /translation="MEHLLSIFVKSIFIENMALSFFLGMCTFLAVSKKVSTAFGLGIA
                     VIVVLGIAVPANQLVYTHVLKEGALVEGVDLSFLNFITFIGVIAALVQILEMILDKFF
                     PALYSALGIFLPLITVNCAIFGGVSFMVQREYNFVESVVYGVGAGTGWMLAIVALAGL
                     TEKMKYSDVPAGLRGLGITFITVGLMALGFMSFSGIQL"
     gene            complement(29602..30228)
                     /locus_tag="PXE26_000153"
     CDS             complement(29602..30228)
                     /locus_tag="PXE26_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005717817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit D"
                     /protein_id="HDL5592779.1"
                     /translation="MADNNNLKKLLLSPIVDNNPIALQILGICSALAVTTQLQTAVVM
                     AIAVSLVTAFSSMFISMIRNYIPNSIRIIVQMAIIASLVILVDQILRAYAYDLSKQLS
                     VFVGLIITNCIVMGRAEAFAMKSGPVESFVDGIGNGLGYGAMLIIVAFLRELIGSGKI
                     FGITILETVQNGGWYQANGLFLLAPSAFFIIGFVIWAIRTWKPEQVEK"
     gene            complement(30228..31001)
                     /locus_tag="PXE26_000154"
     CDS             complement(30228..31001)
                     /locus_tag="PXE26_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit C"
                     /protein_id="HDL5592780.1"
                     /translation="MAKFNKDSVGGTLTVVVLLSLICSLIVAGAAVMLKPTQDIQKQL
                     DKQKNILQAAGLLQKDTNVQETYTKFIEPKIVDLATGDYVEGVTGFDARAAAKDPAQN
                     VVIAPEDDKANIKTRAKYAEVYLVKDESGKTTQVVLPMHGNGLWSIMYGFVAVQPDAN
                     TVNGITYYEQGETAGLGGEIANPNWQKNFVGKKLYNEQNQVALRVGKGASADKDHGVD
                     GLSGATLTSNGVDGSFKYWFGQNGFGPYLAKFKAAAGAN"
     gene            complement(30994..32229)
                     /locus_tag="PXE26_000155"
     CDS             complement(30994..32229)
                     /locus_tag="PXE26_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit B"
                     /protein_id="HDL5592781.1"
                     /translation="MGLKNLFEKMEPAFHKGGKYEKWYTLFEAAYTIFYTPGTVTRKD
                     AHVRDAIDSKRMMLIVWLALFPAMFYGMYNVGAQGILAALKMGTLTDLVANNWHYSLA
                     DSLGSVADAGWGTKMLLGATYFLPIYLTVFAVGGFWEVVFAMVRKHEINEGFFVTSIL
                     LALIVPPTLPLWQAALATTFGVVVAKEVFGGVGKNFMNPALAGRAFLFFAYPGQISGD
                     AVWVAADGFSGATALSQWAVGGQGALQHVATGETITWMDAFLGNIPGSIGETSTLMLI
                     IGAAIIVFARIASWRIIAGVMIGMAATATLFNVIGSDTNPLFSMPWHWHLVLGGFAIG
                     MFFMATDPVSAAFTNKGKWAYGILIGFMCVLIRVVNPAYPEGMMLAILFANLFAPIFD
                     YLVVQGNIKRRLARVANNG"
     gene            complement(32232..33590)
                     /locus_tag="PXE26_000156"
     CDS             complement(32232..33590)
                     /locus_tag="PXE26_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit A"
                     /protein_id="HDL5592782.1"
                     /translation="MITIKKGLDLPIAGKPEQVIHNGNTVTEVAMLGEEYVGMRPSMK
                     VREGDVVKKGQVLFEDKKNPGVVFTAPASGTVTAINRGEKRVLQSVVIKVEGDEQITF
                     ARYEASQLASLTSEQVKQNLVESGLWTAFRTRPFSKVPALDAEPSSIFVNAMDTNPLA
                     ANPEVIIAEHQQAFFDGLTVLSRLFESKKVIHLCGSADSNILNAAQSRQINNVETNRF
                     KGPHPAGLSGTHIHFIDPVGATKQVWYLNYQDVIAIGKLFTTGELFTDRVVALAGPQV
                     KNPRLVRTRLGANLSQLTANELNAGENRVISGSVLSGAIATGVHDYLGRYALQVSALL
                     EGREKAFFGMIAPYSDKYSITRTTLGHFAKKLFNFTTAVHGSERAMVPTGAYERVMPL
                     DIIPTLLLRDLAAGDTDSAQALGCLELDEEDLALCTFVCSGKNNWGPLLRQALDKIEK
                     DG"
BASE COUNT        10038 a         7350 c         6507 g         9925 t
ORIGIN      
        1 atattcataa ttcttgctta tttatgcaaa taaatcaata aaacccataa aaatcagcta
       61 aaaatttgct ctatgtctca aaaatgagat ttgccgtttg aatcgcccaa aaaattggct
      121 tagactaaat tggtctaaac ttccataaca tttaggagaa attttatgtg tcaaagtaaa
      181 aaagttgccc ttttaggtgc tgcaggtgga atcggtcaat cactcgcctt attattaaaa
      241 ctcaatttac cggctaaatc tgaattatct ctttacgata tttcccctgt tactccagga
      301 attgcagtgg atttaagcca tattccaact gatgtaaaag taaccggttt tgcaggtgaa
      361 gatccgactg aggcactaaa agatgccgat gtggtcgtta tttctgctgg tgttgcccgt
      421 aagccgggga tgacacgtgc cgatttattc aatacgaatg ccactatcgt gcataactta
      481 gtcgaaaaag cagcgaaagt ttgccctaaa gcttgcattg caattattac taacccggta
      541 aacaccatta ttccgattgc ggcagaagta ttgaaaaaag ccggtgtgta tgacaaaaat
      601 aaacttttcg gtgttacaac attagatgtt attcgagcga atacctttgt ggctgaagcg
      661 aaagacgtaa atgtgaaata tgtaagagtg cctgtgattg gcggacattc cggcacaact
      721 attcttccac tgctttcaca agcaacagta aatggcttaa aacttgagtt cactcaagaa
      781 caaatcgagc aattaactca tcgtatccaa aacgccggta ctgaagtggt tgaggcaaaa
      841 gcaggtggtg gctcagcaac cttatctatg gctcaagcag gagcagaatt tgcacttggt
      901 ttagtgagag ccttaatcgg ggaagatgtc attcgttatg cttatgtaga taatgccaat
      961 ggcgaaacct ctccggcatt ctttgcttac ccgattcgtt taggtacaaa tggtgtggaa
     1021 aaagttctac ctatcggcaa tctcagcgaa tttgaaaaag atcaactaga gcagttaatt
     1081 cctgtattaa atgatgaaat tcagttagga caaactttta ataaaaatgc ttaaggcata
     1141 actttaaggg ttgagaaatc agcccttttt aacattctct caattaaaaa tataaaaacg
     1201 gaaattaccc atgaaaaaac accatatcat tatacttaca ttggcttcag catcggttgt
     1261 agcttgcagc tcgaacaccc ccgttcaagt cgtaaatggc gacaaaaata tagactattc
     1321 tcaacctaaa acgatctata ttagtgaaac caatactcaa ccgccagccc taactaaaca
     1381 ggaaaagatt aaaccatcga atgctactgc tctttgtttt aacggtagtt actctactga
     1441 tattcagaat ccttgcaaga aagatggcgg agttaagcaa tattttgccc atcatcacgc
     1501 caattaaaaa tcctataaaa aatgcacaat gtatcttacc attgtgcatt ttttctatgt
     1561 tttattttct gatttttctg gctgctcttt ttccggttca gggtcaaact tcaccacagg
     1621 gacacaacct cggcaagcac cttgatttac ccctagctca tcgcaaaagg catcatattt
     1681 ctcaagggct tttttaaacc agcctttctt ttctgtttgc tcgctcatca tctcttcctt
     1741 ttatgttgaa ttattaatgc aagcggtcaa attttgctga atttttccac ttgtcatcat
     1801 taattgcagg aattgctaat cacggaaatt attaaattgg aatggctgcc ctaaatctgc
     1861 ccctttcact agctgaattg cggcttgtaa atcatcacga gatttgcccg ttacacgcac
     1921 ttgctcgcct tgaatttggg cttgaacctt gattttagaa tccttaatca gcttggtaat
     1981 tttcttcgcc atatctgact caatcccttg cttgagctta atttctttgg aatagagttt
     2041 accgtgatgc tcactttctg tagggatatc taatgaacta tgctcgatcc cacgttttac
     2101 acaagagccg attaaaatct caattaactg ctctaattgg aaatccgatt cggtcgtgag
     2161 cttaatgctt tcattttttt catttaactc aataacggct tccaccccac ggaaatcgta
     2221 gcgggtgctt aatacacgat tggcattttc taccgcatta cgcacttcgt gcatcgtgat
     2281 ttcagataca atatcaaatg atggcattgt tgttcctctc aattaatgtt gaaataaatg
     2341 attggcatta agtaataaac ataatgccgt taagtccccg aagtttacca caaaatcagc
     2401 ttgtgcttgc acttttggtt tagcgtgcaa agcaacgcct aaactggcgg tttttaacat
     2461 tggtaagtca tttgccccat cgccgactgc cacccattga tttggtggaa tattaaaggt
     2521 tgtcgctaaa ttctgtaagg tatcggcttt atgttgagca tccactactt tgcctaacac
     2581 cttgccggtt aatttaccgt caataatttc cagttggtta gagaccgcaa aattcaaccc
     2641 gtatttttgt tttaagtaat cggcgaagta atcaaatcca ccggacacaa tcgctaattt
     2701 ccagccgtgt tccttaagaa tagcaaccat ctgctcaaag ccgtccataa gcggtagatt
     2761 ttcccgcact ttttgcaaaa tgctttccga tgcattttcc aacgtgccga ctcgcttgcg
     2821 taaactttgc tcgaaatcca gctcgccccg cattgcactg gcagtaatgg cggacaccac
     2881 ctcgccggtg ccggcaagtt tggcaatatc atcaatacat tcaattttaa tagcggtgga
     2941 atccatatcc attaatagca aaccgccttg gtttaaggtt ggaataatag tgagatcgct
     3001 aatatccgca ttgattttct gtgccgtttc acgcagctcg caagcggtta aatttgtgga
     3061 aaaaaatgca attttgtagt ctaaatagac cgcttgtttc agcaaaattg ctgccgtttg
     3121 ttgtgaaaac tgttcaattt cacgctcgtt taaggttttt gaatagataa aaattgtgtt
     3181 tgtcattgtc ttattttagg ttgtttaaat ttactgcact aatctaacag aaaagcgtgc
     3241 tacaatcacg catcattttg agggaatttc gatgtacatt agtcgtgaaa aaataacgaa
     3301 aacgcttttg ctggcaggga ttacgctact ctgctgtggg atcgtggcgg ttattttaat
     3361 gggcgtaaac caatttaagc taggctcaca attggccagc attaatcaag tatcaaacct
     3421 ttcacaccta ttggttcgcc agcaagcaaa tattttttcg tttttgttag ttaaaaatgc
     3481 caaaaccgat gagctggttg atgcgttgga tagttttgcc aaagaagatt ttattattga
     3541 tgccaatatc tattcaccaa atggcgtgct actggctcaa agccaaaatg cgaaagattt
     3601 aaaagtattg ctcgattcag agcaatctgc caaaactcag caaattgttg agccaatatt
     3661 ttctcaacag gcgttggttg gctttttacg cgtcacgttt gatgcagaat atgggcaaac
     3721 tactaaagca cgagtagagc aacaatttca tcaactttat ggggaaataa ttattttgct
     3781 actcacaggt atattgttgg caagtagcat taactactat tttcgtcgta aaattcatca
     3841 tgtacagata agcccaaaac cacttatgag tcaagtaaaa acccaaaccc agcgttttca
     3901 ctcacgtcgc cgttggatta agcgtaaata gtttacactc aaatggataa acgattgtaa
     3961 tttgagcgaa taagcgtata atatccgccg tttttcgccg aatggcatca tataaaaatt
     4021 aaaactttaa agaggaataa atggctaaag aagattgcat tgagatgcaa ggtacgattt
     4081 tagaaacctt accaaataca atgttccgtg tggaattaga aaacggtcat attgttaccg
     4141 cacatatttc aggcaaaatg cgtaaaaact acattcgtat tttaaccggt gataaagtaa
     4201 cggttgaaat gactccatac gatttaagca aagcacgcat tattttccgt gcaagataat
     4261 tcagcataaa ataaggcgaa caattgtgtt cgcctttttg tttggttttt tagttatttg
     4321 cttttttagt tatttgcttt tttcaataat cccttctgca caggcaaaag cagatgacca
     4381 cgcccattgg aaattataac caccaagcca gccggtaaca tccagcactt cgccgataaa
     4441 ataaagccct gctgtatttt tcgcttccat cgttttagat gaaatatagt cggtatcaac
     4501 accgcctttg gttacttccg ctgtacgata gccttccgtg ccgtttggca agaaatgcca
     4561 atggtggata aattgctcta ataaggtcag atctttttta ctcaaatcgg caatcacttt
     4621 atcggtcagc aatttctgtt ccagccaaac ttcaaccaat tttttaggta aataacgaga
     4681 taatacggtt tttagctgta atttcggcga agattggcgt agttcgctca atatatcggt
     4741 aatggactgc gaaggtagca gatcaatctc taccgtttcc cccaattccc aataattgga
     4801 aatctgcaaa attgccgggc cggataagcc tctgtgcgta aacaacatct gattgctaaa
     4861 acttttgcca ttggcggaaa cagtaatcgg cagtgcaatg ccggaaagct cggcaaaata
     4921 tttatcgctc tctttccaag taaaaggcac aaggcttgca cgtggtggca caacaggaat
     4981 accaaactgc tcggcaagtt aatagccaaa agggcttgcc ccgagagccg gcattgaaag
     5041 ccctccggtt gcaatcacta agtgttcgga ttggaacttg ccacaagcgg tcgaaatttc
     5101 aaaaaaattt gcaacttttt ccacagaaat gaccgcttgc cgtaacagaa tctcaacctt
     5161 gcctttgttg cattctgctt gtagtaaatc gacaatttgt tgcgagcttt catcacaaaa
     5221 caactgccct agctcttttt cgtgatagct aatgccatag tggctgacaa gcgaaataaa
     5281 atcccattgg gtataacgtg aaagggcgga tttcacaaaa tggcggtttt ggctaaggta
     5341 atttccggca cttacgtcta aattcgtaaa attgcaaaaa ccaccgccag acattaaaat
     5401 tttacgtccg actttcttac cgctgtctaa caccaccact tttttgccag cttgccccag
     5461 ttgggcagca caaaacagcc ctgccgcacc ggcaccaatc accacaacat caatattttg
     5521 cattaaaaat tcagtacctt atctgcttga attgtccaat ctgccagttc aattaatgtg
     5581 ccaatctcta ccccatcggc taaaggcaaa tctgtaatcc ctcgagcatt agtacaggtt
     5641 ttgcataatt ttacgtttgc cccttgggcg gttaaaattt ccagcatttg ctgaatatga
     5701 taaccctctg ccggattttg ctttgccagc cctgcggtga ctgcatccga cattaagaaa
     5761 agtttaattt ccgtattggc tttatgttgt tcttgaattt gtaatgccaa acgcaacgca
     5821 ctgaaaaacg tttcattgcc gtaaggagca gaattgatga taaaaagaag tttttgaact
     5881 gaattagaca ttgttttacc tcggaataca cgaaacacat agataatgaa tcaaataccc
     5941 tctccccttt gtgggagagg gatagatttt tcttcgttta gaagaaaaat cagggagagg
     6001 ggggtagagc ttaacccacc cacacaaatt tagcaataaa gagaagtgaa accactaaaa
     6061 cagaaaggtt gatttctttc caacgccctg taaaggcttt cattacgcag tagctgataa
     6121 agccgaatgc aatcccttca gtgatggagt aagtaaacgg catcattgcg gtagtaataa
     6181 atgccggcgt agcttcagtt aaatcgtccc attttacttc aattaagcta gatgccatta
     6241 aaattcctac aaataccaat gcccccgcag ttgcataggc aggtactaac cctgcaagtg
     6301 gtgagaagaa aatggttaat aggaataaga tcccaactac caccgcagtt aagccggtac
     6361 gaccgccaac tgaaacgccg gagccacttt caatataggt agaaatcgct gaagttccca
     6421 tataagagcc tgccattgca gcggtactat ctactagcag agcttgtttc attttcggga
     6481 aacgcccttg ttcatccgca aagcctgctt tggtagtcac cgcaattaag gtgccggaag
     6541 agtcaaacag gtttaccaac ataaaggaga aaatcatccc gagtaaggca acatcaaaag
     6601 caccggcaat atcaacctgc cccacaactg ccccaaggct tggtggcata gacattatgc
     6661 cgttaaagct caccgccggg tcaaaggcta aggcaagagc ggtaacaatc acaattgaaa
     6721 ttaacacgcc tgagtgaata cctttcgccg ctaatacaac aatgatgaaa aagcctaaaa
     6781 tccccattaa cactttcggg tcgtgcaaat cacctagtgc cacaagcgtt gccggatttg
     6841 gcaccaccaa gcccatattt ttaaaaccga ttagggcaat gaataaaccg ataccggcac
     6901 caatacctac acgtaaacca agtggaatcg cagacataaa ccagtaacga acttgtaata
     6961 cagttaatag gaataagccg acagagccta agaaaatcgc ccccataccc acttgccacg
     7021 agtaacctaa tttttgcacc actacgaatg caaaaaaggc atttaagccc attgccggtg
     7081 caagagcaat cggtaaatta ctgaataacc ccattgcgat agtaccaaaa gcggcaatta
     7141 aacaagtagt cacgaacact acttgggtgt ccattcccgc cacgcctaaa atagacggat
     7201 tgacgaaaac aatataaacc attgtgaaaa aggtagtaat accggcgata atttcggttt
     7261 ttacattact gccttttgct ttgagctgaa ataatttttc taacataaga ccttcggtgt
     7321 ttaaacaaaa tgacaacgcc caagcaatcg gttgctcggg cgttgacgat ttttatcacg
     7381 gaataaatac ttttgcaagc acttaatacg ctaaaactaa ttttagtaat ttcaccgcta
     7441 aaaatgccag actgaaacgc tgttcatcgg cgaccgtcca gaactgcact tcctgttcgg
     7501 atttcgccaa taactgactg atttctaacg cattttgctc ttcgttttcg ccatttttca
     7561 ccgctgtaat cactgaattt tcattaaaat tcagccaatt ttcggctttc caagcttcac
     7621 ttaacgcatt agcatctaac tgatattcag actgcaccga caccatttgg gaaaccccat
     7681 aaaagaccgg cacttgcacg ctgtggaagg tagtacaagc ggtcaaattt ggtaaaactt
     7741 ttgcaatttg cagttcaaag gcttttgaga acggcagact tttctcttct ccttgcacat
     7801 tagccggcac aacatcaaag gcaatgcgtt ccgcattttc atcaaacgga atgccgttta
     7861 acaaacgggc agtttgtccg gcaagctcct tgactttttc atcgccaaaa taggcagacg
     7921 gtaaaagtga ggttacccac acctgtttta acggctcgtt caacaatggc tttaaggcta
     7981 acgccagttg tgaaatttgc ggattggcta aagcaacgat atttcgctca cgcaaatttg
     8041 cgacattttc atcatttaca cttggcacaa ctaccggtac atcgccgatg agtgcggtaa
     8101 tgccgtataa atctaaaatc acacagccgg ctttcaccgc ttctgccaac acttccgctt
     8161 gtgccatttt gccggcaaat agaacatggc taaattccgc ccaatttact tcatctaacg
     8221 catattgtgc gactgctttt gccccaaagc gtaaattctg ctcttcacca aacggctcaa
     8281 gctcaacggc tgaaatattt tcaatcccta aatcttgatt tgctaatgct tcaagtaatt
     8341 tttctgccag cgtaaaatca gcggcaatcg ctaaatggat attcgacaca ctatctcctt
     8401 tttcataacg ttattcggtt tcattataag ctaatttcac gcttcagaaa aatcataact
     8461 cataatgtgt aatttatggt ttttgcaaat tttaaaccta aaaacaccgc ttgttttgcc
     8521 tgtaatttac ttttcaaatg attgaacttt tgatatagtt cacactttaa aagtagctta
     8581 tcattctcat taaaactgag gattagctaa agcccaatag taaaacaaaa tggcaaaaca
     8641 agattcagat tgtataacct tagatctgtt tgcgactgta ccaaaagttg ggcgtcctcg
     8701 tacaaatcct cttgatagag aacaacaact tcgaatcaat aaacgtaacc aactaaaacg
     8761 agataaatct tccggtttaa aacgggtaga attaaaactg cattcgaatt tagtaaagtt
     8821 attagaggaa caggcgtctg aacaaggtgt ttcacgcggg cagttaattg aaacaattct
     8881 aaataattat ctcacaaata ggtagtagca atggcagttg taggtttatt ttacggtagc
     8941 gatacaggca atacagaaaa tatttcaaaa atgattcaga aaaaattagg ggctgaatta
     9001 attgatattc gagacattgc caaaagcaca aaagaagata ttgaagcata cgattttctg
     9061 atgtttggga tcccaacttg gtattatggt gaatcgcaag ccgattggga cgattttatg
     9121 cctaccctaa aagagattga ttttaacggc aaagtcgttg caatttttgg ttgcggtgat
     9181 caggaagatt atgcagaata tttctgtgat gcaatgggta ctgtgcgtga tgtggtagag
     9241 ccaaatggtg gtgtgattgt tggtcattgg ccaactgccg gttacacttt cgaggtttct
     9301 caggccttag ttgatgatga tacttttgtc ggcttatgta ttgatgaaga tcgtcagcct
     9361 gaattaacca ctgaacgtgt taataaatgg tgcgagcagt tgaaagaaga aatgtgctta
     9421 gaccaactcg cataataact attttggata aagataaata agtggcatat atgtctgaag
     9481 caaatattaa acgtttaaaa gaggtaggct taaaagtaac cgagcctcgt ttgactatcc
     9541 ttgcattaat gcaagatatt cgtgatgaaa tgcaacattt tgcagcagaa gatatttata
     9601 agattctgtt agaaaaaggc tcagacattg gtttagcaac ggtttatcgt gtcttaaacc
     9661 aatttgaaga agccggcatt ttaacccgcc ataatttcga tgcgaataaa gcagtattcg
     9721 aattaaatat gaaccacgaa cacgaccata ttatttgtat ggattgtggt aaggtgttcg
     9781 aatttaaaga tcctgatatg gagcgtcgcc aacgtgaaat cagtgaaaaa cacggaatgg
     9841 aattgactaa ccacagttta tatctgtatg gtaaatgcag taatttaacc aactgtgatg
     9901 agaaaaaata atatttctta ttttgactta tttctattac cgaagtccct ttgggtcttc
     9961 ggtattgttc tatataggtt tccctaattt aaaatgacga tggaagaaaa tacccacact
    10021 gttgtagatg cccaaatccg gcagcctcgc aaaatttctc ctttttggct gttaccaata
    10081 gttgctttta ttattggtgc tttgctattt ttccaaattt taaaagagca aggtgaaaca
    10141 atcacgattc gatttagtaa aggtgatggc attactgccg gaaaaaccgc tattcgttac
    10201 caaggcttgc agattggtca ggttaagcgt gtttattttg tcgataattt aaaagaagtg
    10261 gaagtgcaag cagaaataaa ccctgaagcc aaaagtattt tacgcaaaca gactaaattt
    10321 tggttagtgc aaccaagtgc ttctttggct ggcgtttcag gcttagatgc gattgtttct
    10381 ggtaactata ttaccctact tcccggtgaa ggcgatttcg ttgatgaatt tattgcagaa
    10441 gaagatcctc cggctattac cgtgagcgat ggcgatttac tgatccgttt aatctctgat
    10501 gacataggct ctattactgt cggagcgagt gtttatttcc gtaaagtgcc agtgggtaat
    10561 attgccgatt atcgttttac caaagaccag aaaaaaatcg aaattgatgt cgtcattaat
    10621 caaaaatacg ctcatttagt aaaaaaagag agccgatttt ggaatattag cggtattagc
    10681 gctgatgtaa atttacaagg tattaaaatc aatatggaca gccttgcctc ggtagtacaa
    10741 ggtgcggttg cttttgattc gcctgataat atggaaattg ccgagcaagg acagaaattt
    10801 gagctatatc cggatttgaa atcagctaaa cgtggaattg aaatcaacgt aaaactaccg
    10861 cttacacata atttaaaaat taatgagact ggtgtttttc accaaaatgt gcaaattggt
    10921 atgctttcgc agctaaaatt accgcaagta aaagacaacg gtgtgccaca gcaagaatca
    10981 gggcagcata aacagattga tggggtttta ttaattgacc caagttatga aaatttacta
    11041 cgttcccaaa ctaaaatctt gctcaaagag ccgaaattct ccttaaacac agagcagctg
    11101 acgaaagtag gtgagctgct gcgtggtgtc tattttgagg ttcacccggg ggaaggagaa
    11161 cctcaatcgg aatttgtggt acaaaacgaa gccgattatc tattaagttt accgaattta
    11221 cttagcttta gcttaattgc tcctcaagcc tatggggtag ataccaatca ggggatttac
    11281 tatagcgatg tgcaaatcgg agaaatcgtc aaacgtagcc tagagttaga caaagtacgt
    11341 tttgatgtca ttatttatcc gccttatcgc aacctgattg ggagtaacag caaatttgtt
    11401 gcgatatcca acattgatat gtcggtgggg ctagatgggt taagagttca cgccggttca
    11461 ccatctgaat ggttaaaagg cggtgttcgc ttaattaacg gtaaaaatga cggtagcccg
    11521 aaaaaacaat atgcacttta taaagatata gaaagtgcgg aatcaggcat ggctacctta
    11581 gataaaaaag ccaccactac cctttcggca gattcattat ctggtatcag cgaaggctct
    11641 ttggtgctat atcgtgattt tcaggtcggc gaggtgttaa aaataacccc gaaacaacaa
    11701 aaatttgagg ttgagctatt tatccagcca aattatcgtc atctattaac cgagaaaagc
    11761 cgtttctgga ttgagccggc aacgagtgtt gatgtgtcac tcaaaggcgt gaatatcact
    11821 acagctccat taatgcgtac cttaaaaggg gcgatcagct ttgatgatgg cggttcaaaa
    11881 ggcaataaaa cgctttatgc aagtaaggag aaagccactt cgggcaatac ttatctcacg
    11941 ctgattgcaa aagatgcgag taagttaagc gaaggaatgg acattaaata tatgggctta
    12001 accgtaggtc aaattgaaaa acttgagcta caaaatgcaa aaaaacagat aaaagcgacc
    12061 gcttacattc aaaggaaata ctatccgtta attgcaaaag ccggcagtaa atttaatgtt
    12121 atctcgcctg aaatcagtac ctccggcttt aaaaatttag atgcagcact acaaaattac
    12181 attacggttg atgtcggttc agggcaagct caaaaccaat ttgttcttgc agataccgat
    12241 acggtaaaaa ccacctatgc caacggtttc cccattattg tcgaaaccac caatgctaac
    12301 ggtattcagc cggaagcacc ggtgctttac cgtggaatgc aggtgggaat agtcagccgt
    12361 ttagggctaa gtgagttagg cgatcgagtg cttatttatg tcaatattca agataaatac
    12421 aagcacttag tcagaaccaa tacccaattc tggcaagctt caggttacac tatggacgtg
    12481 agcctgcaag gtgtaagtat gaactccggc acaatgtcgc agttattaaa tggcggtatt
    12541 gagttctcta ccccttacac taaagtggtg aagcctcaag cccagccaaa cagacgattt
    12601 ttcttacagc gcaaactacc tgatgaagcc ccggcttggg atcaaggaat tgcggaataa
    12661 tattgatgga gtaaaaaatg cctttattag atagttttaa agtagatcac accaaaatga
    12721 acgcaccagc cgtgcgtgtt gcaaaaacaa tgaccacacc gaaaggcgat accattaccg
    12781 tgttcgatct ccgtttctgt cgtccgaata ttgatattct accggtgcgt gggattcaca
    12841 cgatggaaca tctttttgcc ggttttatgc gtgatcacct caatagcgaa caagtggaga
    12901 tcattgatat ttcaccaatg ggttgtcgta ccggttttta tatgtcactg attggatcgc
    12961 cttcagcaga agaagttgtc aaagcttgga cggcatcaat ggaagatgcg ttacataaaa
    13021 ttcctgatgt atcggcaatc cctgagctga atgaatatca atgtggctct tacaaagagc
    13081 attctttaaa agaagcacat caaattgccc gcaacgtatt agctgccggc attggtataa
    13141 atcgcaacga agatttagcc ttagacgaaa aattacttaa tccataattt tttcacattt
    13201 tttcgggggc aaatggctat ttgcccctgc atttttattc ggaaatcaca aatttatgtt
    13261 tgaaaaactg tttaaatggt ttgaggcaag ggtggaaacc tatccaaatg aaatgccgaa
    13321 aactccaaaa tcaggtctca ttccttttat ttacgatgcc actaaaggaa tgcggtttta
    13381 tatcttacta ctgaccgtat tagttgcagc tgtcggtatt atcgaagcgg ttctgtttcg
    13441 ctttatgggc gatttagtcg attgggtcaa taaatactcg ccaacagaac tttgggcaga
    13501 aaaaggctgg acgattatcg gtatgttttt tattgcccta cttgcagtgg tgtttgttta
    13561 ccttgccagc agcattcgct ttcaatctct gcaaggggta tttccaatgc gtttgcgttg
    13621 gaacttccac cgcttaatgc ttgggcaaag tttaggtttc tatcaagacg aatttgcagg
    13681 aagagtgtct gcaaaagtaa tgcaaaccgc cctttccgtg cgtgatgtga ttatgacttg
    13741 tgccgatatg ttggtgtatg tgctggttta cttcaccacc tccagcgtga ttttattaca
    13801 acttgacggc tggttattcg tgccgtttat tttatgggtc atctcattag cggcaaccat
    13861 tatctacttt gtcccgaaat tagcccaagc tgctcaagag caatcggatg ccagaagttt
    13921 aatgaccggt cgaattaccg atgcttacgc taacattgcc accgtcaaac tcttctcgca
    13981 cggcaaccgt gaatctgcct atgcgaaaga gtcgatggaa ggatttatgg tgacagtgca
    14041 taaacagatg cgtttagtga ctgtaattga aaccgtaact aatctaacct cgatggcatt
    14101 aataatttca actgcgggta tcggtttatg gctttggggt tcaagcgtag taactgcagg
    14161 ggcgattgcc acctcaaccg ctttggcttt acgcattaaa ggcttatcac aatggattat
    14221 gtgggaattt gctcgtctat ttgaaaattt aggtacggta caagacggta tgattacgct
    14281 ttccaaacca cacaatgtgg tagataaaat cgatgcgaaa ccgttaaatg taaccaaagg
    14341 cgaaattaaa tttgagaatg tggattttgc ctacgatccg aaaaaaccgc tactgaaaga
    14401 ttttgacctc actataaaac cgggggaaaa agtcggctta gtcgggcgta gtggtgcagg
    14461 taaatcaacg ctcaccaatt tattattgcg tttttacgat attcaagacg gttcaatcac
    14521 gattgacggg caaaatatcc gtgatattac ccaagaaagc cttcgctcac aaattggttt
    14581 agtaactcaa gacacctcgc tgttacaccg ctctgtgcgt gaaaacttga tgtacggtcg
    14641 cccaaacgcc actgaagaag agatgatcaa agccgttgaa caagctgccg ccagtgaatt
    14701 tattccaaac ctgcaagatg ccaaaggcag aaccggtttt gatgcacacg ttggcgaacg
    14761 aggggtaaaa ctttccggcg gacaacgcca acggattgcg attgcccgag tgatgctaaa
    14821 agacgctccg attttattac tcgatgaggc aaccagtgcg ttagactctg aagtagaagt
    14881 ggcaattcaa gaaaatctca cgcaattaat ggaaggtaaa accgtggttg cgattgccca
    14941 ccgcctctct accattatgg caatggacag acttatcgtg ttagataaag gcgaaatcgt
    15001 tgaacaaggc acgcacgaag aattgcttgc tcaaaacggt gtttacgcca gactttgggc
    15061 tcaccaaagc ggtgggttct tgccggagaa tacggatatt taatcaactc catcacacat
    15121 catactaagc aagcggtcat tttttgttag caatttgcaa gatttcaaca aaaaacgacc
    15181 gcttgttcgc caattaaaat cgcttccaag cccccataaa atctctcaaa aatttgcaag
    15241 atttctcccc ttttttcagg tatcattatg acctttaata acaataattt tggagcaaat
    15301 tgtgtcttcc ctttggtctg attgccttaa tcacttacaa acgaaagtct caccaactga
    15361 ttacagcact tggctgcgtc ctctgcaagc gagttctgag aatggggaac ttacacttta
    15421 tgcacaaaat caatttgttg aaaactgggt aaaagataaa tttttatcgg aaattaccga
    15481 gcttgcccgt tttttggcga aaaatgataa tttggtggtt acgttaaaag ttgggattaa
    15541 accgacagaa cagccaaagg tcagcccaaa tctaaaaaac gagagttcag aattcagcaa
    15601 taccggcttt aaaaccgggc taaatccaaa tcaaaccttt gataattttg tacaaggtcg
    15661 ctcaaaccaa ttagctaaat tagtggctca acaagtggtg gataatttag gcgaaagcca
    15721 ttgcaaccca ctctcgtttt atgccggcac cggtttgggc aaaacccact tattacacgc
    15781 tatcggcaat gaattagtta aacgcacacc gggtactcgg gtgctatata ttcatttgga
    15841 acgtttttat cgtgatatta ttaaggcgat caacagttcc aataacgatg cggaaaaaat
    15901 caaaaaattc taccgctcgc ttgatgtgtt aatgattgac gatattcaat ttcttgccaa
    15961 taaaccgaaa gtacaagaag agtttttaca tctactcaat gctttatttg agcagagaaa
    16021 gcagattatt ctaacctctg acgttttgcc aaaaaatatc gataaaattg acacagcgat
    16081 taaatcccgt ttaagcggcg gtattagtgc gaccattgag ccacctgaat tggaaacccg
    16141 agtggcaatt cttcgccaaa aagccttaga acgtggagca gatttgcaag aagatgccgc
    16201 ctatttaatg gggcaaaaac tccgaaccaa tgtgcgtgaa ttggagggag cattaaaccg
    16261 tgtgattgcg tggcaaaaat tgacccttcg cccgattacg gttgatgcgg tgcgtgaaac
    16321 cttgcaagat ctgtttgcct cttttgatta cttgattacg attgaaaata ttcaacgcat
    16381 tgtggccgaa tattacggca taaaagttgc cgatattaaa tcgaaaagtc gggcaagaag
    16441 cattgcccgt cctcgccaaa tggcaatggc actggcaaaa gagctaacca accacagctt
    16501 gccggaaatt ggtcgggaat ttggcggtcg ggatcatact accgtgatgc acgcctgcaa
    16561 aaccattaat gaattacgcg ataccgaaag cggtatccaa gaagattata tccatttaac
    16621 acgcaaatta tcatcttagc ccgatgaagg aatgattatg caaattacca ttaccagaga
    16681 acaattactt aagcctttac aacaggtgtg tggcgtatta agtagccgtc cgactttgcc
    16741 tgttattaac aatcttttat tagaaattga aggtaatcgt ctatctttaa ccggtaccga
    16801 tttagaagtg gaattaacca cccaagcaca actgctacaa gcggtcgatt ttgccggaaa
    16861 atttaccatt ccagctaaaa aattcctaga tatcagtaaa agcctacctg atgacagcgt
    16921 gatttcggta caatttgaag aagataaagc cattatcaaa gcaggacgta gtaaatttag
    16981 tttagctaca ttaccggcaa gtgattaccc gaatttgatg gattggaaac cggaagtgga
    17041 tttctcgatt gatcaatcta cccttgcccg tctgattgat gccacccaat tctcaatggc
    17101 aaaccaagac gcccgttatt tcttaaacgg aatgaaattt gaaaccgaag gcaatttatt
    17161 acgcaccgtt gccacagatg ggcaccgttt agcggtttgc acaatggtgc taaatcaaga
    17221 gcttttgact cattcggtta tcgtgccacg caaagccgta cttgagcttt cccgcttggt
    17281 tgccagcaac gatgaaaccg tgcgtttgga aatcggttca agcaatatcc gtattacaat
    17341 gaacggcatt gtatttacct ctaaactgat tgatggcaga ttcccggatt accgccgagt
    17401 tctgcctcgc aatgcagatc gcattctaga agcggaaacc gaaaccctta aacgggcatt
    17461 aatgcgtgca gcgattcttt ctaatgagaa atttagaggg gtgcgtttaa ccttaagcaa
    17521 taatttactc aaaattaccg caaacaatcc ggagcaagaa gaggcggaag agatcattga
    17581 tgttgcctac gacagcccgg aaatggaagt cggctttaac gttagctatg tattagatgt
    17641 gttaaacacc ttaaaatgcc aacgtgtgcg ttttagctta gttgattcaa gttctagttg
    17701 cttaattgaa gattgcgaca acagctctgc cgaatatgtg attatgccaa tgcgtttata
    17761 attcacagca acactaaacc aacaaaaaag cctgattgat tttatttcaa tcaggctttg
    17821 tttttataag ttattcaaac gtacatcaat taaggtttgt tcctgaggat ttgcggtcgt
    17881 tttagcttgc tcataagcac ttttcgccgc aggaatatcg ccttttgctg caagaatatc
    17941 gcctgttaga atttgcttac gcaattccca cgctttatct tgaatttgag ccagacttgc
    18001 cagtgcttca tcgtaagatt ttagttggaa gtcaatttga gccaaacgaa aacgagcgat
    18061 agattgtaag gttgaatccg aataagtcaa aactgactgt aacgctgttt ttgccgcaga
    18121 aaaattccct ttttcgaccg cttgtttagc tacttcaaat tgggcaaaag cggcatagct
    18181 tgaatcttta ttatcggcaa taaatttctc aacaagcggt tgatttttgc ttggattttg
    18241 caaataactc tccatcacgc tttggtatga agcggatgtt ttttgtgccg tttcaagctg
    18301 gtgatttttc caaaaattcc agccggcagt tgccgcacaa gctaaaataa tcgccaccaa
    18361 aatcggtgtc ccgttctctt taaaccaatt tttggcatct tcaaattgct gctcttcggt
    18421 tttatttaaa tattcgttac tcatcttttt ctcctaaaat cgtttagata gctcagcaat
    18481 cagctctgat tgagcaatcg tgatttgttc tgctcctgaa cgtaaatctt tgataacaac
    18541 ttgcttttca gccacttcgc tttcgccaat cactaacgca atttgcgctt ctactttatc
    18601 tgcacgctta aattgttttt ggaatttacc gccggaacag tgtgtcatta cgccaacgtg
    18661 tggcaattcg ctacgaatct gctctgcaag ttggaaggca tttagtgttg ccccttcacc
    18721 ggagaatacg atatacacat ccaccgtttt tggtaaatca atctctttat tcacctcttg
    18781 taccaacagc actaaacgct ctaagcccat tgcaaagcca acgccttggg ttgcgtgtcc
    18841 accgagttgt tcgactaagc cgtcataacg cccaccgcca catacggtgc cttgtgagcc
    18901 taaggctgaa gtgacccatt caaacacggt tttattgtaa tagtctaaac cacgcaccaa
    18961 ttttggattg acttcgtaac ggattcccat tgcatcaagt aaggcacaaa gttgggtaaa
    19021 atgttcacgg ctgtcatcat ctaaataatc gagcagtttt ggggcatcgt ttaatacatt
    19081 ttgtagtgct tcgtttttgg tatctaaaat ccgtagcggg tttttcacca aacgctcttt
    19141 ctcttcttcg ttcattaaag cggtgtgatt ttctaaaaat tttactaatg ctgagcgata
    19201 atttgcacga gcttctaacg agccgataga gttaagttgc aaagaaacat gttgatcgat
    19261 gcctaactct ttccataggc gtgcggtgag aataatcaac tccgcatcaa tttccggatt
    19321 tgcaatgcca aacacttcaa caccggcttg gtggaattgg cggtaacgcc ctttctgtgg
    19381 acgttcgtgg cggaacatcg gccccatata ccataagcgt tgctcattat tgtagatcca
    19441 accacgctca atcgctgcac gcacacaacc ggctgtacct tccgggcgga gcgttaattg
    19501 ctcatcgtta tcccagaacg tgtacatctc tttcgacacc acatcggtta cttcgccaat
    19561 ggcacgggca aataacggag tgctttctac aatcggcata cgtacttccg aatagccgta
    19621 acttgccagc acattacgca ctttctgttc aacccattgc cataatggag actcacttgg
    19681 tgagcagtcg ttcattcctc gaattgcttg aattgttttt gccactatat ttatcctatt
    19741 tgttcaatat ctatacgatt atgttgttgt gcaactctgg cacgaatttt agcttctaat
    19801 tggtcgatta attttgcgtt gtcaaaacgc tctttttgac gaacgccatc taaataaaag
    19861 ccgctcattt tattgctgcc ggttacccct aaatcagaca ccaacgcctc tcctggaccg
    19921 tttaccacac agccgataat cgaaacgtcc atcggcgtga taatgtcttc taaacgttgt
    19981 tctagctcgt ttaccgtcgc aatcacatca atttcttggc gggagcaggt tgggcaagca
    20041 ataaagttga tcccacgaga gcgaatacgc agcgatttca aaatatcaaa accgactttc
    20101 acctcttcaa caggatcagc cgctaatgac acacgcaagg tatcaccaat cccttccgct
    20161 agcaacagac ctaagcctac cgccgatttc accgaaccgg ctctcgctcc gcctgcttca
    20221 gtaataccta aatgcagggg ctgatcaatc tgttttgcaa gaagtcggta agattcaacc
    20281 gctagaaata catctgaggc tttcacgctg actttgaatt gatcaaagtt aaggcgatct
    20341 aagtgatcaa cgtggcgtaa tgccgattct aataatgcct gtggtgtcgg ctcgccatat
    20401 ttttcctgca aatcacgctc taatgatccg gcatttaccc cgattcggat cggaatgttt
    20461 ttatctctgg cacaatctac caccgtgcgg atccgctctt cattcccgat attacccggg
    20521 ttaatccgca agcaatccac cccatattcg gcaactttca acgcaatgcg gtaatcgaag
    20581 tggatatccg ccaccaatgg cacactcact tgttgtttaa tcgctttaaa tgcctcagca
    20641 gcgtccattg tcggcacaga cacacgcaca atatcagccc cgacccgttc cagcgattta
    20701 atttgagcaa cggtggcttc cacatcggtt gtgcgggtgt tggtcattga ctgaaccgta
    20761 atcggtgcat cgccgcctac aggcacatta cccacataga ttttcttcga tacccgacgt
    20821 ttaataggtg attgatgtat catattttta gctaattgtg aaaatttata aaaacagaaa
    20881 acgctcgtaa agacagctat cgttaaatgc tagctttacg tgcgtttcat cgttaaatca
    20941 agcttactgt aacggtaaat gaatacgagc tacacgccca tcaattttca atggtacttc
    21001 ttgaccttta tagtacactt ttacattggc aggcgcacca atggttaaac gatattgctc
    21061 attctcattg aaacttaaag tctcaccatt gttatataat ttttctgcta aacgtttatt
    21121 tttagcaccc cgcactgtaa tccagctttg tgaaccggta atttcgatac gaagctcatc
    21181 attcgttacc gcaacaggct gttctgtagg ggcttgttcc gattgagatt gctgtaaaac
    21241 attaactgcc tcaacctgtg cagtggtggc atcagcttgt ttaacttctt ctaccacttt
    21301 aacatcttct tgtgttacag gtgatgatgc tgcttgtgta ggctctactt tttcagttaa
    21361 tgccggttct gctgcaacta ccgtttctgc tacttgagca ggctgctctg aaacctgaat
    21421 aggttgctga acaggcacgg aagtttgtgc tgaagcatca ttatttgtag cggtattcgc
    21481 cacttcagca actggtgcag agctaacaaa ttgctcgcga ttttcctgtt ctttttgata
    21541 cccttgccac caccaaagta atgtcattcc taatgccgca agcaatacta ataccgttaa
    21601 atactttaag gttttacctt gtgaatttga tgaaggtttt actgaagaaa ctttagtgac
    21661 ttcttttgga atagtgactt caccataatt aacgctcgaa ataagggatt caggtaaacg
    21721 caaaaatttc acataattac gcacatagcc acgcacaaaa gttggggcaa cattttgtag
    21781 aataaagata tcattttcaa gtgattcaat atgtgatttt tttaagttgg ttttttgagc
    21841 aacatctgta atagagagat ttaacgcttc acgagccgct tttaattgtt gccctaaaga
    21901 aagtgctgta ccagcttgag tagaattaac tgattccgtc atataaaact ctttaaagaa
    21961 agtagtagaa ataaaattca aaaattattc ggaagtttaa agaggtaatg cctattttgc
    22021 aatcttaatg cgtaaaaaat tgaaaattta atcggcaagc ggtcatattt ttcaattttt
    22081 ttgcaaaata tgaccgcttg tatccggttt tactttgaag ctaaattggc tttggctacc
    22141 gcaatcgcct ctgccacacg ttgtgggttc actccacctt tggcacaacg tttttctaag
    22201 caagattcta acgagagaat tgggtaaaca tcatcgccaa tcgaatgatg gaattgctgg
    22261 aattcgttaa tgcttaatgc ttcaagtggc tcttttttgc tgattgcgta aaccaccgct
    22321 tcgccaacaa tatgatgagc ttcacggaat ggcacgcctt tcgccactaa ataatctgcc
    22381 aactcggtcg cattcgcata accttgctga gcggcttctc gggtgcgttc ggtattcact
    22441 tgaatatcaa ccagtacaag ttctgcaatt tctaaacaag cctgccaagt ttccaacgca
    22501 tcaaaaatac cctctttgtc ctcttgcata tctttattat aagcaagtgg taaccctttg
    22561 agtgtagtta ataaaccgtt taatgcccca aatacccgac cggatttccc acgaatcagc
    22621 tcacaagcat cagggttttt cttctgtggc ataagtgatg agcctgaggt cacacgatcc
    22681 gacatttcaa ggaagcctga ttcgccacta ttaaaaatga ttaaatcttc agcaaagcga
    22741 gagaggtgca tcatactgat cgaggcagta gagagcagct ctaaaatatg gtcacgatct
    22801 gacacgctgt ctaaactgtt gcgtgtggct tcttcaaagc ctaaatcacg ggctaataag
    22861 tcacgatcaa tgccgtaagc cgtaccagcc aatgcccctg aaccaagcgg gcaagtgctc
    22921 atacgtttat tagcatcact caaacggctg aaatcccgtt ctagcatttc ataatacgcc
    22981 atacaccaat gagcgaaggt cacaggctga gctcgttgta aatgggtata gcccggcatc
    23041 accgactctt gattttcttc ggcaacggaa accaaacgct cttgcaaagc tcggattctt
    23101 tcttgcaatg ccaccgcttg caccttgcac cacattttaa tatccaccgc tacttggtca
    23161 ttacggctac gcccggtgtg caatttttta cctaaatcgc ccactttttc aatcagctta
    23221 gattcaaccc agctgtgaat gtcttccgca tcatctttta agatgatggt aaggttagat
    23281 tctacctctg ctctcacctc ttttaatgct gcgattagtt gttctaattc tgctaccgtt
    23341 aaaataccta ccgaagtaat ggcttttgcc cagccgattg agccttcaat atcttgaatc
    23401 gccaagcggt aatcaaaacg taatgaatcg ttaaaatatt taaattttgc gtctgcttgt
    23461 tgtgtaaagc gtccacccca aagtgccaca gtctgttcct tgtatattat tctttgtatc
    23521 gatcaaaatg aaaaaggcgt tttaccgcct taacttttcg cttattttgc ataaatatgc
    23581 aaaatatttc aatatttatt tataactatt ttaattgtga ctcaataatg ccaccgccta
    23641 agcaaacttc acctaagtaa aacacggcag actgccccgg cgtcacggca atttgcggtt
    23701 catcaaacat cactcgaatg gtttcatcat caatcacttg gatttcacac gcaatatctg
    23761 cttgacgata acgggttttt accgtgcagc gtaaattttc acgcaacggc tgcatatcca
    23821 cccaagtgag ctgtttcgca attaagccac ttgaaagcag ggctgaatta tcgtgtcctt
    23881 gtgccacaat caatacattg ttaattaagt ctttctccac cacataaaac ggatcttcac
    23941 ttagcccttt caccccaccg atacccaagc ctttgcgttg cccaagcgtg tgatacatca
    24001 gcccatcatg gcgaccgact aatttgccct caacggtgcg gatttccccc ggttgagccg
    24061 gtagaaaacg agctaagaaa tctttaaatt tacgctcacc gataaaacaa atgccggtag
    24121 aatctttttt ctttgcggtt gctaatccta ggtcttcggc aatggctcgc acaatcggct
    24181 tctcaatttc acccactggg aataaactct gcccgatctg ctttttattt aacgcatata
    24241 aaaagtaact ctgatctttg ttttcatcta agccacgcaa aagtttcgca tcttgatcat
    24301 cgctcgtacg gcggacgtaa tgcccggtcg caatataatc cgcaccaaga tcttctgccg
    24361 catattccaa aaaggcttta aatttgatct ctttattaca caaaatatcc ggatttggcg
    24421 ttcttcctgc cttgtattct gccaagaaat attcaaatac attatcccaa tattccgctg
    24481 caaaattaat tttatgcagt ttcataccca gtttatcggc aaccgcttga gcatcggcaa
    24541 gctcggcggc ggcggtacaa taatccgtat catcatcttc ttcccagttt ttcataaaca
    24601 agccttccac ttggtagccc tgctgttgaa gaataaaagc ggaaaccgag gaatccaccc
    24661 caccggacat accgataatg acttttttct tgctgttttc agcaagttgt tctggggtta
    24721 atttagggaa atgagtgtcg taggtttttg aggttaattg agttgtcata aatctcccgt
    24781 aacttcggtt aaggcgaagc acattggtta ataataaaaa caacaagcgg tgaaatttgc
    24841 aaaaaatttt gcaaaatgaa ccgcttgcct attaagaaat tagagttctc tttggtaaaa
    24901 gacttttcct actctatcaa tatgttcaat aaagttggca ttggttaatt gatgataaat
    24961 cgacaagtca aataaatagg gcgagtcgga atcgtctaaa tcaccccaaa tgcgtttgac
    25021 aatatcgtaa gtaagatctt ttcctttaaa agtaagatct acatctgagc cttcacgata
    25081 attaccttta gcacgcgagc cgtaaataat ggcttgctcc acttcagggt atttcgcaag
    25141 aatatcggta atagttttcg tcgctcgttc gcttagtcca aagtttggca tagtgtttct
    25201 actcgctgtt caaattcaat aaataaaggc agatacgcct tgataatttt attaaattct
    25261 tcagttaaaa tagtttcatc gtcagtatga actgttatat tgcggctttt tatcatttct
    25321 agccaaactt cgccctgagt gattagccca cgattaaaag ccaaacgaga agccgttttt
    25381 gaaccataaa tatcaacttc accttcccat tttaaaatat cttgcattaa cttccacgct
    25441 aactcgtgtg taatctcaaa actctggata attccttttt taattacatc aatgtcggta
    25501 tcagcgtatt tttctgcttc tgcttgaagg taacttactg attttttata gttatcaaac
    25561 cgctgtttcc agcgaatatc tctattcata ttatttcact tcataaaatt gtggctcttt
    25621 attaaaacgt gccacttctt cagggtcggc tgtgccgtct gcgattttag attttaggtt
    25681 atcgcaaggt tcttcgcagt cgcacatttt tttcatacct aaagcggtga taccgccaca
    25741 gctgcctttg atggttttgc ctttcacgat aaaaccaatc gacatcgcaa aaattacggc
    25801 tacaaaaaag ccaaaggtta ataatacagt ttccattttt cactccaact attgtgattg
    25861 aataagtttg ctaaattcgc tcgacatttg tgtctcaaat ttatcgccgt ttttaacaat
    25921 taaaaaaata gctaattttt cacgctctgc cactgctaat gctttttccg ctcctaaaac
    25981 aaataaaccg gttgataagc cgtctgccgt cattgtagtt ggggcaaata cggtgataga
    26041 ggctaaatta tggtttaccg gacgtaactg ttttgggtcg ataatatgtg aaagacggtt
    26101 gcctttttca tcttcaaaat aattacgata attgcccgaa gttgccatcg ccaaattgtg
    26161 caacggcacg gtaatttgtg cggcttgacc ttgtgtcatt accggcttct cgattgcaat
    26221 ccgccaatct aagccttgta aattttttcc tttgcctcgt aattcgccac caatttcaac
    26281 taaatagttg ctcacaccta tagtttcaag atgctcggct aatttatcta caccgaaacc
    26341 ctttgcaata gacgataaat ctagataaag attagctgct gacttggtga gcttgggttt
    26401 actactcatt tcaagcaaaa ttttatcaat gccgacataa gcagaacgct ctgcaatttg
    26461 ttcatcagac ggcactttat ttaagcgttt atccggcccg aagccccaca agttcaccaa
    26521 tggaccaacg gttacatcta aagccccttc ggttacttta tttaaacgga ttgcctcttg
    26581 taccactttt gcaaaatcct gcgaaatttc gaccgcttga tttgcctgct ttgcttgatt
    26641 aaaacggcta atttccgaat cttgttggta ggtggacatc tgattattca cctcaatcaa
    26701 taagccatcc agctcatttt tcattttttc aggcgaaatc aaattctcca cttcaccatt
    26761 atcaatatat tttacggtgt aagtcgttcc catggttttg cctgacagcg taatttgctc
    26821 aggggctttt tcacaagcac ttaaagtaaa aaaagcaatt aaaagaagaa aaaatttttt
    26881 cattggtgtc acaaaagtta aaaattgggg aaattatagc atatttagcg attaaataag
    26941 cacttcatat cgctgtaaaa taatttgttt aaacgattcg ttgcaacttg cccagtcaat
    27001 cagatctact gtgaaaggta ggtcagaatc cgtaaacgca agctctaact ctgtttgttg
    27061 ccgaattgtg agcggttgtt tggtgattaa tgctaaatca agatccgaat aggctttggc
    27121 tgtgccttta atgcgagagc caaaaaccca aacgggtgta tcaggcaagt attttttgaa
    27181 aatatccaac acctgttggc gttgtgactc agttaaatca atcatagcta ttgcgttttt
    27241 ggagctgttt aactaaaaaa tacgtacttt ccagaaagtt tgaaattccg ttataaacct
    27301 gctgtgcttt attttgatca taagtatgcg aagtaatatt tcgcattttg cgataatcca
    27361 gccaaacttc cggtgattca atcagcccat attgagcagc cattcgcaaa atatcacgga
    27421 actcggtgct atcaatatca gtgtcatttg actcaatgtt tttgagctga cgcttgagca
    27481 tttttatcga caattcgtaa acaaattcaa atttttggat tgctcctgca atcaaagtgt
    27541 cttgaataat tgcttcttgc cggttaaacc acgcttgatt ctcaaggctg acaatcgttt
    27601 tctcaaggga attgaaggca ttttcaagta ccgtaatatc cagttgttcc atttgcttcc
    27661 ccttaaaatt cacattatta aattaccaaa acttaataat ataaattaaa tcaagcggtc
    27721 aattttgcaa atttgaccgc ttgtagtcag aagttaaggt ttatcaacca ccaaagtcat
    27781 ctaataagat gttttcgtct tctacaccta aactcttcag cataccgatt accgcagcat
    27841 tcatcaccgg tggaccacac atatagtatt cgcagtcttc aggtgcttcg tggtttttga
    27901 ggtagttctc ataaagcacg ttatgaataa agccacggaa gtaatcttct ctgtcgcccg
    27961 gtaatggatc agaaagtgcc acataccatt tgaagttatc gttttctgct tgaagaccat
    28021 caaaatcttc cacatagaac atttcacgct cagaacgagc accataccag aatgacattt
    28081 tacgtttaga ttttaaacgt tttaattggt cgaagatatg tgaacgcatt ggtgccatac
    28141 ctgcaccacc accgataaag accatttccg catcggtatc tttagcgaag aactcaccga
    28201 atggacctga aattgttact ttatcacccg gttttaatga ccaaatgtag gaagacattt
    28261 gacccggcgg tacgtccgga ttgcgtggtg gaggtgtagc aatacgcacg ttaagcataa
    28321 taatgccttt ctcttccgga tatgaagcca ttgagtatgc acgaataata tgctcgtcca
    28381 cttttgaagt ataacgccat aagtcaaatt tatcccagtc ttcgtggtac tcttttggaa
    28441 tatcgaagtc tttataatga acggtatgag gttcagcttc aatttggata taaccacccg
    28501 cacggaacgg tacttcttcg ccttcaggaa tttgaagttt aagctctttg atgaaggttg
    28561 ctttgttatc gtttgagata acggtacatt cccatttttt cacaccaaag atctcttccg
    28621 gaagttcaac gtccattgaa gatttcacgt ttacctgaca agctaaacgc cagccttctt
    28681 tcgcttcttt cttagaaatg tgcgataact cagttggaag aatttcacca ccgcctgatt
    28741 tcacttgtac tttacattga ccgcaagagc caccgccccc acaagctgac gaaacgaaaa
    28801 tccctttact tgctaaagca ccgagtaatt ttccaccagc cggtagcgta atgccttttt
    28861 ccggatcgtt gttgattgag atggtaatat cacctgaatc aactaatttt gatttagcga
    28921 aaagaatgat caccgcaagc actaatacca gagccgtaaa tgcgataata ccgaaaataa
    28981 aattactatc cacgatatgc tccttataat tgaatgcctg agaatgacat aaagcctaac
    29041 gccattaagc ctaccgtaat aaaggtaata cctaaaccac gtaagcctgc cggcacgtcg
    29101 gaatatttca ttttctcggt taaacctgca agggcaacga tggctaacat ccagcctgta
    29161 cctgcaccta cgccataaac cacagattct acaaagttat actcacgttg taccataaac
    29221 gatacaccac caaaaatcgc acagtttacg gtgataagtg gtaagaagat acctaatgca
    29281 ctataaagtg ccgggaaaaa cttgtctaaa atcatttcca gaatttgaac aagtgccgca
    29341 ataaccccga tgaaagtgat aaagtttaag aagcttaaat ccacaccttc tactaatgca
    29401 ccctctttta atacgtgggt ataaactaat tggttagctg gaactgcaat gccaagtact
    29461 acaattaccg caatacctaa accaaaagca gttgaaactt tcttagacac cgcaaggaat
    29521 gtacacatac caaggaagaa agaaagtgcc atattttcaa taaatatgga cttaacaaag
    29581 atactcagaa gatgttccat cttatttctc cacttgttcc ggtttccacg ttctaatcgc
    29641 ccagatcaca aatccgataa taaagaacgc acttggtgct aataagaata aaccgtttgc
    29701 ttgataccaa ccgccatttt gaacagtttc aagaatggtg ataccgaaaa ttttacctga
    29761 accgataagt tcacgtaaaa aggcaacgat aattaacatt gcaccgtagc ctaaaccgtt
    29821 accgatacca tcaacaaaac tttcaaccgg gcctgatttc atcgcgaatg cttctgcacg
    29881 ccccattacg atacagttgg taataataag gcctacgaat accgataatt gttttgacag
    29941 atcgtaagca taagcgcgta agatttggtc aaccaaaatt actaatgatg caataatcgc
    30001 catttgcaca atgatacgga tactatttgg aatatagtta cgaatcattg aaatgaacat
    30061 acttgagaat gcagtaacta aacttaccgc aatcgccatt actactgctg tttgtaattg
    30121 agtcgttacc gctaacgcag aacaaatacc taagatctgt aatgcgatcg ggttgttatc
    30181 gacaattggc gataacaata attttttaag attgttattg tctgccatta gttagctcct
    30241 gccgctgctt taaattttgc taaatatgga ccaaaaccat tttgaccaaa ccagtatttg
    30301 aatgaaccat caacaccgtt cgaggttaat gttgcaccag ataaaccatc aacaccgtga
    30361 tctttatctg cagatgcccc tttacccact cttaacgcaa cttggttttg ctcgttatac
    30421 agttttttac ctacaaagtt tttctgccag ttcgggtttg caatttcgcc acctaagcct
    30481 gccgtttcac cttgttcata gtaagtaata ccgttaacgg tatttgcatc aggttgtacc
    30541 gcaacgaaac cgtacataat tgaccataag ccgttaccgt gcattggtaa tactacttga
    30601 gtcgttttgc cagattcatc ttttactaaa taaacttcag catatttagc acgcgttttg
    30661 atattcgcct tatcatcttc aggtgcgata actacatttt gagcaggatc tttagctgct
    30721 gcacgagcat caaaaccggt tacaccctca acgtaatcac ctgttgctaa atcgacaatt
    30781 ttcggctcaa taaatttggt ataggtttct tgcacattgg tatctttttg caataaaccg
    30841 gccgcttgta agatgttttt ctgtttatca agttgtttct gaatatcttg tgttggttta
    30901 agcattactg ccgcacctgc cacaatcaaa gaacaaatta aacttaataa aactacaacg
    30961 gttagcgttc cgccaacgct atctttatta aatttagcca ttgtttgcta ccctcgctaa
    31021 tctgcgtttg atattccctt gaactactaa atagtcaaag attggagcaa ataagttagc
    31081 aaataagatc gctaacatca taccttcagg gtatgctggg tttaccacac ggattaatac
    31141 acacataaag ccgattaaga taccgtatgc ccatttacct ttgttggtaa atgcagctga
    31201 taccgggtcg gttgccataa agaacatacc gatcgcaaaa ccgcctaata ctaaatgcca
    31261 atgccaaggc atagagaata atgggttggt atcagaaccg attacattaa ataatgtcgc
    31321 agttgccgcc ataccaatca ttacaccggc aataattcgc caagaagcaa ttcgggcaaa
    31381 tacaatgatt gcagcaccaa taatcaacat taaggtagag gtctcgccga tagaacccgg
    31441 aatattacct aagaacgcat ccatccaagt aatggtttca ccggttgcaa cgtgctgtaa
    31501 tgcaccttga ccaccaactg cccattgaga aagtgcagtt gcacctgaga agccgtctgc
    31561 ggcaacccat actgcatcac ctgaaatttg acccgggtaa gcaaagaaca agaaagcacg
    31621 accggctaac gcagggttca taaagttttt acccacgcca ccgaacactt cttttgcgac
    31681 cacaacacca aaggtagttg caagggctgc ttgccataac ggtaatgttg gaggaacaat
    31741 taatgctagt aagatagagg ttacaaagaa accttcgttg atctcgtgct tacgcaccat
    31801 tgcaaacacc acttcccaga aaccgcccac tgcaaatact gttaagtaga ttggtaggaa
    31861 ataggttgcc cccagcaaca ttttagttcc ccagcctgca tcagctacag agcctaaact
    31921 atcggctaag ctgtagtgcc agttgttagc aactaaatcc gttaatgttc ccattttgag
    31981 tgccgctaga ataccctgtg caccaacatt gtacattccg tagaacatcg cagggaataa
    32041 cgctaaccat acaattaaca tcatacgctt agagtcaatc gcatcacgca cgtgagcatc
    32101 tttacgagtg accgtacccg gtgtatagaa aatcgtatag gcagcttcaa atagcgtgta
    32161 ccatttctca tactttccac ctttatggaa agcgggttcc attttttcaa aaagattttt
    32221 caaacccatt tttaaccgtc cttctcgatc ttatctaacg cttgacgtaa taatggtccc
    32281 cagttgtttt taccggaaca cacaaaagta cataacgcta aatcttcttc gtctaactct
    32341 aagcagccta aagcttgagc ggagtctgta tctccagctg ctaaatcacg caataagagt
    32401 gttggaatga tatccaacgg cattacacgc tcataagccc ctgttggtac cattgcacgc
    32461 tcactaccgt gaactgctgt tgtgaagtta aataatttct tcgcaaaatg ccctaaagta
    32521 gtacgcgtaa ttgaatactt atcagagtaa ggagcaatca taccgaagaa cgctttctca
    32581 cgcccttcta ataaagcaga cacttgtaat gcgtaacgac ctaaatagtc gtgtactccc
    32641 gttgcgatag caccacttaa cacagaacct gaaatgacac ggttttcacc cgcatttaat
    32701 tcgttggctg ttaattgtga aagattcgcc cctaaacgag tacgcaccaa acgtggattt
    32761 ttcacttgtg gcccggctaa tgcgactaca cggtcagtaa atagctcacc ggtcgtaaat
    32821 aatttaccga tagcaattac atcttggtaa tttaaatacc aaacttgttt agttgcacct
    32881 accgggtcaa taaagtgaat atgcgtacca gaaagacctg cagggtgcgg acctttaaag
    32941 cggttagttt ccacattatt gatctgacgg ctttgtgccg catttaaaat atttgagtct
    33001 gcactgccac agagatgaat cactttttta ctttcaaata aacgacttaa tacagttaag
    33061 ccatcaaaga aagcttgttg gtgttctgca ataatcactt ccggatttgc tgcaagtgga
    33121 ttggtatcca tcgcattgac aaaaatagag gaaggttctg catctaatgc aggcactttg
    33181 ctaaacggac gtgtacggaa agccgtccat aagcctgact ctacaaggtt ttgttttact
    33241 tgctctgaag ttaatgaagc taattggctg gcttcataac gagcaaaggt aatttgctca
    33301 tcaccctcaa ctttaattac taccgattga agaacacgct tctcgccacg gttaattgcc
    33361 gttacggtac cacttgcagg ggcagtaaat accacgcccg gattcttttt atcttcaaaa
    33421 agaacctgac ctttctttac tacatcgcct tcacgcactt tcattgaagg acgcataccc
    33481 acatattctt caccaagcat agcaacttca gtaacggtat taccgttatg gattacttgc
    33541 tcaggttttc ccgcaatcgg aagatctaag ccttttttga ttgtaatcat attgtttgca
    33601 ctacttttct tttgggttaa aaaatatgat tgcgctaacg caatcgcttc tattgagccg
    33661 cagctttact taaaaataaa caatggtccc ccacctattt ttaaaagcca cattaagttc
    33721 tcaaatctgt gatcaacctt tatcttttct taacaaaagg ttaactaaaa ataatcttct
    33781 tattttacct aaaaagctcc ccttctggct aggaaaaccc
//
LOCUS       DANLZD010000005        31510 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.005, whole genome shotgun sequence.
ACCESSION   DANLZD010000005 DANLZD010000000
VERSION     DANLZD010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 31510)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31510)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31510
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.005"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            540..1268
                     /gene="ttrB"
                     /locus_tag="PXE26_000157"
     CDS             540..1268
                     /gene="ttrB"
                     /locus_tag="PXE26_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrB"
                     /protein_id="HDL5592783.1"
                     /translation="MDLSKRSFLKELSALTVGASFVPLQSAQAFMPAWREGDENKRYA
                     MLIDLRKCIGCQACTVSCSVENATPLHSFRTTVRQYEITNGTQVVNNVVLPRLCNHCD
                     QPPCVPVCPVQATFQRKDGVVVINNEQCIGCGYCVQACPYDARFINEETKTADKCTFC
                     THRLEVGLLPACVESCVGGARVIGDLNDPKSQISQLYQAHKDDLKVLKPEAGTVPHVF
                     YVGLDDDAFVSKIDGQPMLWTGEA"
     gene            1270..2301
                     /gene="nrfD"
                     /locus_tag="PXE26_000158"
     CDS             1270..2301
                     /gene="nrfD"
                     /locus_tag="PXE26_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysulfide reductase NrfD"
                     /protein_id="HDL5592784.1"
                     /translation="MIREVLVEPQHIVWLPWIVHYFFFVGVAATAVFTAVLFAKKSLK
                     PTACELAAVTVALIGSIVAPVALTADLHQPSRILHFYTDFAWRSPMAWGAIILPLFSV
                     AVAGYFVLALAHHTRPNLPKWLAWLQLPILQNQGLLWAFRLFATLTAIGIIGYTVLET
                     YQTGTRTLWHSAWLLPIMLFSAWAVALGLTQAVCKMLFHTQTNTGLWTKLCLILTALS
                     LVGLAFSSPQATQDFAQLFNGSITAYLVGIFWLIALICNFSAKNHRLQWLGVLALIAF
                     GWLLRWVLVIQVQTIAKTNALQNPYHFDWTAVDGGLGIVSIFGLTVLVSIVVWQLILI
                     ICGGRKGEQ"
     gene            2291..5386
                     /gene="ttrA"
                     /locus_tag="PXE26_000159"
     CDS             2291..5386
                     /gene="ttrA"
                     /locus_tag="PXE26_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrA"
                     /protein_id="HDL5592785.1"
                     /translation="MNNKRRNLLKGGLALGGAAAFGAGYSPKVSEIAKGVMHGTSGEK
                     TRDAIHGNSLTPEYQVKDGKLLSNPEQIVCNTQCMGCWTQCGIRARVDLNTNQVIRIS
                     GNPYHPLSSDKTLPFGMPIAKAELLLAGESGIENRSTACARGAAFLEGVNSPYRITQP
                     LKRVGKRGEGKWQTISFEQLVEEIINGGNLFGEGEVEGLKTIRNLVDPINPKQPDLGM
                     KANQLLVTFAGPEGRQPILQRFAQKSFGTINFSNHGAYCGAAYRAGSGAFMKDFDNQQ
                     HAKPDWDHAEFILFIGTSPAQSGNPFKRQARQLAKRRPDDNFSYVVVSPRLEMTSSLA
                     TQNNHWVPIKPEGDLALVMGMLRWIIENERFNADYLSRPSLAAMENAGHVSYANASHL
                     IICEPNHPKFGQALRISDLQDVQLDPEEKVEENLIVVKDQASGELISAKDCLQAVIFV
                     EQIAKLLDGSEVLVKSSMQLLKEATQEKTLAEYSDICGVPVQTIENLAKKFTSHGHKA
                     NAITHGGTMHSTGFYTSWAILLLNAMVGNLNKKGGMAVAAGKFKDFGDGPRYNLANFP
                     NEVKPKGTNLARSKKAYQNSSEFKQKVTKGENPYPAQGAWYPFTGGQTTEMFTSMVQG
                     YPYFAKAWINHMANPVYGLTAMNPIALEKLKDPKILPLFVSIDAFMNETTALTDYIVP
                     DTHNFESWGFSTAWGGVPQRTSTARHPIVPSKNAKTAEGDTICMENFVIAVAKKMGLP
                     GFGENAIADLEGNRYPLHRTEDYFLRAAANIAFAGEKPAPDASEQDLLLTGVQRIMPK
                     IEQTLKAEERLKVANVYCKGGRFAPHESAWKEENMEFQWKNCLQIWNENVYKAQHHSN
                     GEHYWGCPRYMSPRFADGSTLEQHYPQSEWGFKLISFKSNIMSSITAPLLRLLSIKPE
                     GLVAMNRLDAEEKGIKHGDVVKLSTPTAGLTVQIVVLDGIARGTIGIEHGYGHKQIGA
                     SSYTIDGVEIPANPMIAKGINLNDLGIIDHTKAVKSPWVDWVCGSAVRNGIPAKVEKL
                     A"
     gene            5527..6372
                     /locus_tag="PXE26_000160"
     CDS             5527..6372
                     /locus_tag="PXE26_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5592786.1"
                     /translation="MTFVKKTALSLIATALFATSSFAAEQSQYQHIRNATAKIEYAGK
                     TFLVDPYLAEKDRYLPPNAKKRNPTLDMTVSIDEVLNGVDAVIVTHTHHAHWDDVAQQ
                     RVPKNLPIFVQNAGDARLIRSQGFTDVRVVGKDTPFEGVTLTRTRGQHGTDAMYANPK
                     IAEMVGDAMDVVMKAEGKPTVYLVGDTIWNHEIEHSFNTYKPDFVVLNAGCAKLPNFE
                     GSPIMCTEDVSKAHKIAPQAKILTVHMDALPQTSISSDQMRDYVQKEGLNRVTVPKNG
                     DVIKF"
     gene            complement(6485..7882)
                     /locus_tag="PXE26_000161"
     CDS             complement(6485..7882)
                     /locus_tag="PXE26_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDL5592787.1"
                     /translation="MKLSKLAFSVALALTVTACTTGNMSNDGTLQQAQQTYQSYDEIT
                     KQYQINEQWWQGYTDAELNRVVDLAIKNNLDLAKSGIAVNKALYNANLVGANLVPTFS
                     GSGSVSAAKGLGSASSNNVSTGVSTTAAQAAFNLSYTVDLWRRLADTASAAEWTHKAT
                     IEDLKATRLSIINAVVTTYYQLAYYRDAIRITEESIRHYEQISRILTNKMNAGAIDSL
                     AVDQAQQAVLNARNSVIDLKTNQKIAEQTLRNLLNVQPNTPLNIRYPNIMSVKLQGVD
                     LNVPVSAIANRPDVVGSLQRLQSAFKTLTATEKSWFPTLTIGGSITGSATNIGNVADN
                     PVGNGLIKLDLPFLDWNRVKNNVKISETDYVTARLNYEQKITSALNEIDRYYYSYTQS
                     RSSLKILQDTNAKNKRISSYYKNRYEQGVSEFREWITALNTELNSQLAILNAKYAILT
                     NENAVYQAMAGKYRR"
     gene            complement(7972..8595)
                     /gene="gmk"
                     /locus_tag="PXE26_000162"
     CDS             complement(7972..8595)
                     /gene="gmk"
                     /locus_tag="PXE26_000162"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDL5592788.1"
                     /translation="MSLGNLYIISAPSGAGKSSLINALLADLPRSEVQLSISHTTRQP
                     RPAEQDGVHYYFTSHDEFKQLIEQGYFLEWAEVFGNYYGTSLPMIERSLEQGIDVFLD
                     IDWQGARQIREKVPNVKTVFILPPSKTELEKRLIGRGQDSAETIAKRMAEAVSEMNHY
                     NEFDYVIINDDFQQALAELKAILIAERLSLGSQQIRHQHLITDLLNN"
     gene            complement(8708..9181)
                     /gene="gpt"
                     /locus_tag="PXE26_000163"
     CDS             complement(8708..9181)
                     /gene="gpt"
                     /locus_tag="PXE26_000163"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDL5592789.1"
                     /translation="MSEKYTNEKYVVTWDMFHMHARKLAENLLPATQWKGIIAVSRGG
                     LFPAAVLARELGIRHVETVCIASYDHDSQGELNVLHAADTDGEGFIVVDDLVDTGNTA
                     KEIRRMYPKARFVTVFAKPHGAPLVDDYVIDIPQETWIEQPWDLGITFVQPLARR"
     gene            complement(9327..10736)
                     /locus_tag="PXE26_000164"
     CDS             complement(9327..10736)
                     /locus_tag="PXE26_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5592790.1"
                     /translation="MKKYPLLFSLFSPVVWAEKVIEHNTDPISFERQPQAVKFEQNVV
                     KNSQKPTAYQPAYSVNQNVEQQINQAILSQDWATLEPLLSRYPQTENFDPLLWHYAQA
                     ALAYAKKDHQTAVFHYRQLLAKPPSLVYPRFDLALILAEDQQFRAAEQEFKAIQAHLP
                     PELAKIARNTQVQIAENEAWQPDFYLQYTQTDNVNNASSSPIVNVNGRIFRKNADSLP
                     QSAKGVRYGLGLSKLHNVKGNHFVGLTLNYSGIYYWDNRDYREQSVSVSPNYSYRTVA
                     YWLTFSPFIEQNWLGSSRYNVQFGATLNGLRYLNSQWLVSGSFTHLQKRYFEELTASR
                     YNSYQHQLSGGVQWQAVKNGRFFANLDGVREIAREKAQSSNKWLARVGAVFQGERWAT
                     QASIGFGKRYFADKHYLFGYKRLDTEYQANLAVWNRTWHWQGIVPKLNFRYQKIDSNI
                     ADFYSRQNKEVFFTLEKLF"
     gene            complement(10932..12062)
                     /locus_tag="PXE26_000165"
     CDS             complement(10932..12062)
                     /locus_tag="PXE26_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL5592791.1"
                     /translation="MSIKKVTLASLILLGLTACSSGGSGSSSNNVAKPNTKPQTTQQQ
                     TDKAAAEKAAKDKAAKEKAEAERLAAEKAAKEKAEAERLAAEKAAKEKAEAERLAAEK
                     AAKEKAEAERLAAEKAAKEKAEAERLAAEKAAKEKAEAERLAAEKAAKEKAEAERLAA
                     EKAAKEKAEAERLAAEKEVDPIAIIKAKGIDDTNYGLKLGNSKETIEGKVTVRTQSYL
                     YNQPYSVVTAQAVQRNGWENGNYIDKVDGTVTVKGLKTEKLPTEGTATYSGKAFNHDG
                     AKGFNGGDLTYNVNFSKRTGSGRVEGEFGNLIVLEEGTINNTQISSTVHGNNPLNLSG
                     KYTVEFFGKNAEEIAGEIQTKANLTGEVSNFGLAGTRGDIQK"
     gene            12265..13719
                     /locus_tag="PXE26_000166"
     CDS             12265..13719
                     /locus_tag="PXE26_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-histidine dipeptidase"
                     /protein_id="HDL5592792.1"
                     /translation="MSEISTLAPQLLWQWFDKACAIPHPSYHENELAEFIVNWAKSKN
                     FFVERDEVGNVLIRKPATKGMENRQTVALQAHLDMVPQANTGTVHDFTKDPIQPYIDG
                     EWVKAKGTTLGADNGIGLASCLAVLDSDDLAHPTIEVLLTMTEEAGMEGAIGLRPNWL
                     TADIMINTDTEENGEIYIGCAGGENVNVTLPIFLVPHQQDSAVTVTLKGLNGGHSGCD
                     IHTTRANAIKVFARILEQAHNEVEFQIAEIQGGSVRNAIPREAHATLVFSAKNQQKLT
                     ACLSQTAEQVKAELKIAEPNFQFLIEEAQLPEQAFDLASTARVIHFLNVMPNGVVRNS
                     DVVENVVETSLSIGVLNTEASEVKATILARSLIEGGKEEIRSKIRSLTALVGAEVEFS
                     GNYPGWEPNPNSKITPLTKAIYDEILGYESQIKVIHAGLECGLINKIYPNMDFVSIGP
                     TILNAHSPDEKVHIPAVEIYWKLLTKLLEQAPEK"
     gene            complement(13794..15083)
                     /locus_tag="PXE26_000167"
     CDS             complement(13794..15083)
                     /locus_tag="PXE26_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5592793.1"
                     /translation="MDIRQKIAHNKMTSFQWLVVGLTVLLNMLDGFDLMALAFTAKSI
                     REELQLDGAAIGSLMSAGLFGMAIGSLFLSPLADKFGRRPLLLIGTGLATLGMLLTYF
                     ATSAFEIGVWRVLTGLGVAAILTGTNVLVSEYSSQKWRGLAIAIYASGFGIGAMLGGM
                     SAVLLQGEYGWRAVFLVGSILTGAVFVLLFFVLPESVEFLISKHPVNAKARLNQIAVK
                     LGLGNGWELPEIEAKSKSKVAITRLFEPEYRRNTLLIWLAFIAISASFYFISSWTPAL
                     LEEAGMPKTQSQTVGMAISVGGTIGSLIFGFLVSRWAAKHILQAFSILAASAVVAFVF
                     AGNLGLAITLAILVGGLINGCITGLYTINPTLYAPDFRSTGVGTAIGVGRLGSIVSPT
                     LAGILLDAGWKKNELYLGAAVVLLIAAFTVHFLKQRK"
     gene            complement(15287..15622)
                     /locus_tag="PXE26_000168"
     CDS             complement(15287..15622)
                     /locus_tag="PXE26_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HDL5592794.1"
                     /translation="MVSEQRQNPEEQKSEEQKINVEVLYAYPDKYFLKKLQVPQNATI
                     QTIILLSGVLEKYTEIDLRENKVGIFSRPAKLNETVEEGDRIEIYRPLIADPKEIRRK
                     RAAEQAEKK"
     gene            complement(15612..16046)
                     /locus_tag="PXE26_000169"
     CDS             complement(15612..16046)
                     /locus_tag="PXE26_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HDL5592795.1"
                     /translation="MPIVNQSALVPYSAEQMYQLVNQYEKYPEFLSGCVSTKTLSTGE
                     NELKAELHIQKLGISQTFSTHNKMTPPYKIEMALIEGPFRHLHGAWTFTPFDEQSCKI
                     ALQLNFEFSSPIVAMVFGKVFNELTLKMVNAFKQRAKEVYGV"
     gene            complement(16101..17156)
                     /gene="modC"
                     /locus_tag="PXE26_000170"
     CDS             complement(16101..17156)
                     /gene="modC"
                     /locus_tag="PXE26_000170"
                     /EC_number="7.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter ATP-binding protein
                     ModC"
                     /protein_id="HDL5592796.1"
                     /translation="MLKLKLLQQLGNLTLNVNLDLPNKGITAIFGRSGAGKSSLINLI
                     AGLSTAQAGFIELNGQVLFDSQNGINLPPEKRNIGYVFQEHRLFPHYSVEKNLKYGYK
                     RSDSADFLQIVELLGIAPLLNRYPASLSGGEKQRVAIGRALLSSPNILLMDEPLSALD
                     LPRKQELLDYLDKLSARLEIPILYVSHSLEEVVRLADHLVLLENGKVTAFDTLSAVWH
                     SSAFSAWQPNHQRISLLELPVEETLPHYNMLGLSLNAQRLWVNQLPRHQIGEKLRVTI
                     ASKEVSISLQKPTQSSIRNVLKGNVRKIETHLDRVDLAIQVENQQIWSTISLWSFNEL
                     AIQPEQEVYLQIKSVSL"
     gene            complement(17143..17835)
                     /gene="modB"
                     /locus_tag="PXE26_000171"
     CDS             complement(17143..17835)
                     /gene="modB"
                     /locus_tag="PXE26_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDL5592797.1"
                     /translation="MLNFTPQELNAIVLSLKVASIAVVLALPLAVWVAWLLARKQFWG
                     KNLLNGIMHLPLVLPPVVIGYLLLISMAKRGVIGQYLWEWFHFSLSFSWKGAVLASMV
                     MAFPLMVRSIRLAFEAVDPKLEQAARTLGAIPLKVFFTLTLPLSFSGIIAGGVLGFAR
                     SLGEFGATITFVSNIPNQTQTIPAALFTFIETPDGEMAAARLCLVAILISLIALFCSE
                     WLAERQKRYAQT"
     gene            complement(18019..18774)
                     /gene="modA"
                     /locus_tag="PXE26_000172"
     CDS             complement(18019..18774)
                     /gene="modA"
                     /locus_tag="PXE26_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5592798.1"
                     /translation="MKALKKLAITMALTLSGTAFSQEITVFAAASMTNVLQDIQQDFE
                     KAYPQDKITFSFASSSVLAKQIEQDAPADIFISADQKWMDYVAEKQPEKVKHRRNLVR
                     NELVLIAPTESNIEPKAIQAVDFAKELANSYLSVGDPNHVPAGKYAKKALSHYQLWES
                     VEPRLARAKNVRDALSFVERGESPLGIVYSTDAKVSNKVKVVAVFPPESYGEIVYPAA
                     AVSEKASAATFLDFLKTPKAKAKFEAAGFYPVN"
     gene            complement(18795..19556)
                     /locus_tag="PXE26_000173"
     CDS             complement(18795..19556)
                     /locus_tag="PXE26_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5592799.1"
                     /translation="MNLIGFYTLAYKECRRILRIWRQTLVPPVITTTLYFLIFGTLIG
                     GRIGEMNGVGYTQFIAPGLIMMTAITASYVNTASSFFLSKFTRDFEEMLISPLSTHNI
                     IWGYVTGSILRAGLAATLVMCVAMVFVSFEIYSVAIIVLTLLLTIIAFALGGVINAVF
                     ARSFDDVGLIPTFVLTPLTYLGGVFYSISLLPEFWQTVSKFNPIVYMINGLRYGFLGI
                     SDVPLGYTFAVLTSLCIGLYIIAYSLIQRGVGLRS"
     gene            complement(19558..20466)
                     /locus_tag="PXE26_000174"
     CDS             complement(19558..20466)
                     /locus_tag="PXE26_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5592800.1"
                     /translation="MKALELIDLVKTYPTGVKAVKGINLVVEQGDFYALLGHNGAGKS
                     TTIGIISSLVNKTSGSVKVFGYDLDTQKVELKHQIGLVPQEFNFNQFEKVIDVLVQQA
                     GFYGIPRSEALVRAEKWLKLLDLWEKRTHLTRELSGGMKRRVMIARALMHNPKLLILD
                     EPTAGVDIELRRSLWDFLRDLNNQGTTIILTTHYLEEAETLCRHIGIIQHGELIENTS
                     MKALLAKLESEVFVLDLQNSEQNQPLVIQNYPHKWLDENTLEVNVKRQQGLTNLFSQI
                     SAQGAEVLSMRNKSNRLEELFINMAQ"
     gene            complement(20472..22529)
                     /gene="dnaX"
                     /locus_tag="PXE26_000175"
     CDS             complement(20472..22529)
                     /gene="dnaX"
                     /locus_tag="PXE26_000175"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HDL5592801.1"
                     /translation="MSYQVLARKWRPQRFSEVVGQQHVLSALENSLREDRLHHAYLFS
                     GTRGVGKTSIARLFAKGLNCVNGITAEPCGECANCKAIEEGHFIDLIEIDAASRTKVE
                     DTRELLDNVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQ
                     KLPITILSRCMQFHLRALEQSQIARHLEFILNAENIPFEPLALEKLAKAAQGSIRDSL
                     SLTDQAIAMSNANITLAIVSQMLGLIDDNQPLELVQATAQADGEKAMAIIEQIAAKGV
                     DWQQLLSDVAEVLHKIAMLQLVKTPTTEETLVHFLAKQIPPEDVQFFYQLILNSKKEL
                     PFAPEQRAGVEMAILRALAFHPKQAEKIATVAVEKVTQPNHSVSAVTTAKPQNQISQL
                     RENFEQNQQKTVTVANTTTAVESIAQPPQAVDTAISPSAPATLSPAMAALEARKKLQA
                     QQANLAQTEKKKPELKAPQVIAKKSANQTASLQERFISLAENQHKAVLQVSKKTESAP
                     KSVEDEDYRWTWLNPELENQADSAKPSDIKQAILQERTPELVAKTIHLSCQQDKWCDI
                     ANSLNLGGFSRQIALNSYLAEQNEQHLALVLKPNMAHLDNPESRKNLEAALAEKGYSY
                     ELTIGDNSEQQTPLEIRRAIFKQLTEAAKSALLNDEKLMLLRNAFDAQIDESTIRAVA
                     ETE"
     gene            complement(22620..23159)
                     /gene="apt"
                     /locus_tag="PXE26_000176"
     CDS             complement(22620..23159)
                     /gene="apt"
                     /locus_tag="PXE26_000176"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HDL5592802.1"
                     /translation="MNQLDLIKSSIKSIPDYPKAGIIFRDITSLLEVPTAFQATIDAI
                     VAEFKDKGITKIVGTESRGFIFGAPVALALGVPFVLVRKPKKLPREVISQSYTLEYGE
                     DTLEIHKDAVSANDNVLVIDDLLATGGTIDATAKLIRRLGGNVEHAAFVIWLPELGGK
                     ERLEKEGVKSFSLVSFEGH"
     gene            complement(23287..24237)
                     /gene="lpxM"
                     /locus_tag="PXE26_000177"
                     /gene_synonym="msbB"
     CDS             complement(23287..24237)
                     /gene="lpxM"
                     /locus_tag="PXE26_000177"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249087.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HDL5592803.1"
                     /translation="MTRITAQDGYTHKFLWSFLHPKYWGVWLGVLGLVILAYVPVRIR
                     DKLSAFVGKMAYRYLKQKNKKGYHRAKVNLRYCFPDWSEKKREEVVEKMFITVAQTML
                     AIGETAIRPASYLQKRCEFTGFENVVKAKESGKNVIMLVPHTWSIDMAGVAMFSLGYP
                     MTSMYNPHRNALVDWLWNITRERLGGRMHTRQNGIKAFLADVRKGDVGYFLPDEDFGE
                     ELSVYADFFATEKATLPGLNKMARVANAEVIPMFSIYNAEKAKYEMEILPPLEFSGDP
                     IQSAREMNRVIEYFVEKNPEQYVWILRLLKTRRNREDIYL"
     gene            complement(24678..25361)
                     /locus_tag="PXE26_000178"
     CDS             complement(24678..25361)
                     /locus_tag="PXE26_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit E"
                     /protein_id="HDL5592804.1"
                     /translation="MEREQQIPVTNIDVAPKQSSVWKTIFADGVWKNNGALVQLLGLC
                     PLLAVSNSVTNALGLGLATMFVLICTNITVSLFRKITPHDIRIPIYVMVIATVVTAVQ
                     LLMNAFAFPVYQSLGIFIPLIVTNCIVIGRAEAYASKNEVKFSAFDGFSMGLGMTFSL
                     VVLGALREIIGNGTLFSGLDLLLGDWAKALRIDVLHIDSGLLLAILPPGAFIGLGVIL
                     AVKNIIDKR"
     gene            complement(25370..26002)
                     /gene="rsxG"
                     /locus_tag="PXE26_000179"
     CDS             complement(25370..26002)
                     /gene="rsxG"
                     /locus_tag="PXE26_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxG"
                     /protein_id="HDL5592805.1"
                     /translation="MNTSKITLNYALILGFIALLCTAVSTGVYLLTKGKIDDVTAMQQ
                     RKLLEEVVPKSHFDNDVLATCKLVQLENAPYLNRIYVAKKSENLTAYLVQGTAPDGYS
                     GDIVLLMGIEPNGNILGVRTLEHKETPGLGDKIETRVSDWILSFTNQLFSLENEADWN
                     VKKDGGKFDQFTGATITPRAVVNHIRQSAKWVVTELAQNPTMFNQFKACK"
     gene            complement(26002..27057)
                     /gene="rsxD"
                     /locus_tag="PXE26_000180"
     CDS             complement(26002..27057)
                     /gene="rsxD"
                     /locus_tag="PXE26_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxD"
                     /protein_id="HDL5592806.1"
                     /translation="MFKMVSSPHTHSSNLTANFMLWVIAMMLPAFGVQLYYFGYGVLI
                     QTLLAVSLAIVIEIGIAKLRKKTTAFYLADLSGILTALILAMSIPPYAPYWLVLIGVI
                     VALLLAKHSYGGLGQNLFNPAMVGYALLLVSFPVQMTAWIVPIELLSEPPTFRDAISL
                     IFYGVTSDGFSIHQLVNSVDGIAQATPLDSMKSSLAKSGFDAVMNTPIFNGLFATGWL
                     QLNLAFLFGGLVLIYKRIIHWQIPVAMLATFAFFSGFTELFSQQSHLHFVSHFFSGAM
                     MFGAFFIATDPVTASITPRGKLIFGGLVGLLVYLIRYYGNYPDAIAFSVLLANICVPL
                     IDHYTQPRLYGTKLDNR"
     gene            complement(27103..27738)
                     /locus_tag="PXE26_000181"
     CDS             complement(27103..27738)
                     /locus_tag="PXE26_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HDL5592807.1"
                     /translation="MFSELIPALPWSFLFIQDLIGTIVFAISGAIAARQHKMDIFGMF
                     ILAFVTGVGGGTLRDMMIGSTPVFWMKQPIYVLMITLAVVITAIFRNQISRKSWQTGL
                     LVFDAIGLGVFTVIGVQKGLDFGLHPLICVALGGVTGCFGGLIRDILRNEVPIILQKE
                     VYVTASLIGGVIFVAANSVGLESDWVYLATVFTVIIIRLLAIRFNLNLPRL"
     gene            complement(27731..30025)
                     /gene="rsxC"
                     /locus_tag="PXE26_000182"
     CDS             complement(27731..30025)
                     /gene="rsxC"
                     /locus_tag="PXE26_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxC"
                     /protein_id="HDL5592808.1"
                     /translation="MSNPNLVIERIRQNKETGKLWDFPGGIHPMENKSQSNSKPIRTL
                     NLPKFFYVPLVQHSGWAGELLVKVGDVVLKGQPLTKGDHFRQLPVHSPTSGRVIGIEP
                     YVSAHASGLPEITVIIETDGKDKWVERQPIEDFLSLTSDQIIQKVYQYGIAGLGGAVF
                     PTATKLSLADKRCKLLVINGAECEPYITCDDRLMQDFTADLIEGIRILRYVLRPEEVV
                     IAIEDNKPHAIQALETALKGSNDMFVRAIPTKYPSGASDQLIQVLTGLEIPAGKRTIE
                     MGIVMHNVGTAFAVKRAIIDDEPLIERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD
                     YQADKRFPVFLGGPMMGFILPALQAPITKTANCLIAPDHFEYAPPEPERSCIRCSSCS
                     DACPVGLLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCPSYIPLIQYFRQEKAK
                     IEEIEEKARKAEEAKIRFEAREARLQKERDARTARISQAAEKRREEVANAGGVDPVKA
                     ALERLKAKKAVETVQEIPAEVQVKPNGEPDNSDLMAQRRARRLAKQAEQAVEKSENVT
                     NALIGANNDLPLQSMNETASDKSVGANNYSPEAESEDPRKAAVAAALARAKAKKQAQQ
                     AVEKSENITNAVIGVNNDLPLQSMNETVSDKSVGANNHSPETESEDPRKAAVAAAIAR
                     AKAKKQAQQAVEKPEDIANAVIGVNNDLPLQSMNETTSDKSVGANNHSPKTESEDPRK
                     AAVAAAIARAKAKKAAQQEKSNNV"
     gene            complement(30012..30629)
                     /gene="rsxB"
                     /locus_tag="PXE26_000183"
     CDS             complement(30012..30629)
                     /gene="rsxB"
                     /locus_tag="PXE26_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxB"
                     /protein_id="HDL5592809.1"
                     /translation="MLDLPIIAYILIAIAVIALIFGAVLGYSSIKLKVESDPIVDQID
                     ALLPQSQCGQCGYPGCKPYAEAIANGDVITKCVPGGQPLVVNLAELLGVEVPPMEGMA
                     EPEMKVAFVIEDLCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTNC
                     IEMRPIKPTTQSWNWKFDQDLIIPIVNTTELQRKLVTGGGKNEQS"
     gene            complement(30629..31210)
                     /gene="rsxA"
                     /locus_tag="PXE26_000184"
     CDS             complement(30629..31210)
                     /gene="rsxA"
                     /locus_tag="PXE26_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxA"
                     /protein_id="HDL5592810.1"
                     /translation="MVDYILLVISTALINNFVLVKFLGLCPFMGVSKKVETAIGMGLA
                     TTFVLTVASLSAYLMETYLLEPLNAQFLRTLVFILVIAVIVQLTEMIVHKTSPTLYRL
                     LGIYLPLITTNCAVLGVALLNVNLANNLVESVLYGFGAAAGFSLVLVLFAALRERLAA
                     ADVPRPFQGASIALITAGLMSLAFMGFTGLVKL"
BASE COUNT         8761 a         7241 c         6807 g         8701 t
ORIGIN      
        1 cttcatagaa tctgacagat ttgcggaatg gattcttgaa aaggcttgtg ttcgctctaa
       61 aacattaacc agcttttatg gcgacaagtc tgttataagg gccgttccac cattggattg
      121 gtcaggaaaa tataaatata ccaaaatagg atttagatta tgctacgatt tgtaggggga
      181 tatatgaaga aatacagtaa tgattctctt ataaatagta ttgttatatc taaattaaaa
      241 gcaggatgga aaattagaaa aggaaagaaa cataatatat taattgcccc aaattctagg
      301 agattagcga tacctagtac cccgagtgat attaatgcgt ataaaaactt tagatctaaa
      361 ctaaaccatc ttattgcttt ttaattagta tcaatgccct attatctact tgtatagggc
      421 atttcccttc atccttgacc caaatcaact ttccccttga tatgtggaaa accacaatac
      481 cttgccgttc cctctccgcc ttagaatacc tttgttattt ttaaatttgt gggggaaata
      541 tggatttaag caaacgttcc tttttgaaag agctttccgc cttgacggtg ggggcgagtt
      601 ttgtgccgtt gcaatcggcc caggcgttta tgccggcttg gcgtgagggc gatgagaaca
      661 aacgctatgc gatgctgatt gatttgcgta aatgtatcgg ctgtcaagcg tgtaccgtga
      721 gctgttcggt ggagaacgcc acgccgttgc acagtttccg caccacggtg cgtcaatatg
      781 aaatcaccaa cggcacgcag gtggtgaaca atgtggtgtt gcctcgtttg tgtaaccatt
      841 gcgatcaacc gccgtgtgtg ccggtctgcc cggtgcaggc aacctttcaa cgtaaagacg
      901 gtgtggtggt gattaacaat gagcagtgca tcggctgtgg ttactgcgtg caagcctgcc
      961 cgtatgatgc ccgttttatc aatgaagaga ccaaaaccgc cgataaatgc accttctgca
     1021 ctcaccgttt ggaggtaggt ctgctgccgg cgtgcgtgga aagttgcgtg ggcggggcaa
     1081 gggtgattgg cgatttgaac gacccgaaaa gtcaaatttc ccaactttat caagcccaca
     1141 aagatgattt gaaagtcctg aaaccggagg ccggcaccgt gccacacgtt ttctatgtgg
     1201 ggctagacga tgatgccttt gtgagcaaaa ttgacgggca accaatgctc tggacggggg
     1261 aggcgtaaaa tgattcgtga agtattagtg gaaccgcaac atatcgtctg gttgccgtgg
     1321 attgtgcatt atttcttctt cgtaggcgtg gcggcaacgg cagtgtttac cgccgtgctg
     1381 tttgcaaaaa aatcactgaa accgaccgct tgcgagctgg cggcggtgac ggtagccttg
     1441 attggctcga ttgtcgcccc tgtggcattg actgccgacc tgcaccaacc gagccgtatt
     1501 ctgcatttct acaccgattt tgcgtggcga tctccaatgg cgtggggagc gattatcctg
     1561 cccctgttca gcgtggcggt agcgggttat tttgtgctgg cattggctca ccatacccgg
     1621 ccgaacctgc cgaaatggtt agcgtggcta cagttgccga tactgcaaaa tcaaggcttg
     1681 ctttgggcat tccgcctgtt tgccacactc accgctatcg gcattatcgg ctacaccgtg
     1741 cttgaaacct accaaaccgg cacaagaacc ttatggcaca gtgcgtggct gctgccgatt
     1801 atgctctttt ctgcgtgggc ggtggcattg gggcttaccc aagcggtctg caaaatgctg
     1861 ttccacaccc aaaccaacac ggggctatgg acaaaactct gcctgatttt aaccgcactt
     1921 tcgcttgtcg gactagcatt cagtagtcca caagccacac aagattttgc ccagctcttc
     1981 aatggctcaa tcaccgctta ccttgtcggc attttctggc taattgccct catttgcaat
     2041 ttttctgcca aaaaccaccg cttgcaatgg ctcggcgtgc ttgccctcat cgctttcggc
     2101 tggctactcc gctgggtact ggtgatccaa gtccaaacca ttgccaaaac caatgccttg
     2161 caaaatccat atcatttcga ttggacagcc gtcgatggtg gtttggggat tgtctcgatt
     2221 tttgggctaa cggtgctagt aagtatcgtg gtatggcaac tgattttaat aatttgtggg
     2281 ggaagaaaag gtgaacaata aacgcagaaa tctgttgaaa ggcgggctgg cacttggtgg
     2341 ggcggcggcg tttggggccg ggtattcgcc gaaggtgtcg gagattgcca aaggggtgat
     2401 gcacggcaca tcgggcgaga aaacccgtga tgcaattcac ggtaattcgc tcacgccgga
     2461 gtatcaggta aaagacggca aactgctcag caatcctgag caaattgtgt gcaatacaca
     2521 gtgtatgggc tgttggacgc agtgtggcat tcgggcgagg gtggatttga acaccaacca
     2581 agtgattcgc atttcgggca atccgtatca cccgctttcc tccgacaaaa ccctgccgtt
     2641 cggtatgccg attgccaagg cggaactgtt gctggcgggc gaaagtggca ttgaaaatcg
     2701 ctccaccgcc tgtgctagag gggcggcgtt cttggagggg gtgaacagcc cgtatcggat
     2761 tacccaaccg ttgaaacggg tcggaaaacg gggcgaaggc aagtggcaga ccatcagctt
     2821 tgagcagttg gtggaggaaa tcatcaatgg tggcaaccta tttggtgaag gcgaagtgga
     2881 gggcttgaag acgatccgca atctggtcga tccgattaac ccgaaacagc ctgatttggg
     2941 aatgaaagca aaccagcttt tagttacttt tgccggcccc gaaggtcgtc agccgatttt
     3001 gcaacgcttt gcccaaaaga gcttcggcac gatcaacttt tccaaccacg gggcttattg
     3061 tggcgctgcg taccgtgccg gttcgggtgc ctttatgaaa gattttgaca accaacaaca
     3121 cgccaagccg gactgggatc acgctgaatt tattctgttt atcggcacgt ctccggcaca
     3181 gtcgggcaat ccgtttaagc gtcaggctcg ccagcttgcc aaacgccgcc ctgatgacaa
     3241 tttcagctat gtggtggttt cccctcgttt ggagatgacc tcctccctcg ccacccaaaa
     3301 caaccattgg gtgccgatta agcccgaggg cgatttggcg ttggtaatgg gaatgttgcg
     3361 ttggattatc gaaaacgagc gtttcaatgc tgactacctc tcccgcccaa gtctggcagc
     3421 gatggaaaat gccggccacg tcagctatgc caatgcgtca catctgatta tttgcgaacc
     3481 gaaccacccg aaattcgggc aggcgttgcg gattagcgat ctgcaagatg tgcaactcga
     3541 ccccgaagag aaagtggaag aaaacctgat tgtggtaaaa gatcaggcaa gcggcgaact
     3601 catttcagca aaagattgct tacaagcggt catttttgtc gaacaaattg caaaactgct
     3661 tgatggctcg gaagtgttgg tgaaatcctc aatgcagttg ctgaaagagg cgacacaaga
     3721 gaaaaccctt gccgaatata gcgacatttg tggcgtgccg gtgcaaacca ttgaaaactt
     3781 agcgaaaaaa ttcacttcgc acggtcataa agccaatgcc atcactcacg gcggcacgat
     3841 gcacagcacc ggtttttata ccagttgggc gattttgttg ctgaatgcaa tggtcggtaa
     3901 cctcaacaaa aaaggcggaa tggcagtagc cgcaggcaaa ttcaaagatt tcggggacgg
     3961 gcctcgctac aatttagcga acttcccgaa tgaagtgaag ccaaaaggca cgaaccttgc
     4021 ccgcagtaaa aaggcgtacc aaaattcaag cgaatttaag cagaaagtga cgaagggcga
     4081 aaatccgtat ccggcacaag gggcgtggta tccgttcacc ggcgggcaaa ctaccgagat
     4141 gtttacctca atggtgcagg gctatccata ctttgcgaaa gcgtggatca accatatggc
     4201 gaaccccgtt tacggcttaa ccgctatgaa cccgattgcg ttggagaaat taaaagatcc
     4261 gaaaattcta ccgctctttg tctctattga tgcttttatg aacgaaacca ctgcactgac
     4321 ggactacatc gtgccggaca cccacaactt tgagagctgg ggcttttcaa cggcgtgggg
     4381 cggtgtgcct caacgcacca gcaccgcacg ccacccgatt gtgccgtcca aaaacgccaa
     4441 aactgccgaa ggcgacacca tctgtatgga gaatttcgtg attgcggtgg cgaaaaaaat
     4501 gggcttgccg ggctttggcg aaaatgcgat tgccgattta gaaggcaacc gctatccgct
     4561 ccaccgtacc gaagattact tcctacgggc ggcagcgaac attgcctttg ccggtgagaa
     4621 acctgcaccg gacgccagcg agcaagatct gctgctcacc ggcgtgcaac ggattatgcc
     4681 gaaaattgaa caaacgctaa aagccgaaga gcgattaaaa gtggcgaatg tgtattgcaa
     4741 aggcggacgt tttgccccac acgaaagtgc gtggaaagag gagaatatgg agttccagtg
     4801 gaaaaactgc ctgcaaattt ggaacgaaaa cgtgtataaa gcccagcacc acagcaacgg
     4861 tgaacactat tggggctgcc ctcgttatat gtcgccacgt tttgcggacg gctccacgct
     4921 ggagcagcac tatccgcagt cggaatgggg ctttaaactg atttcgttta aatcgaacat
     4981 tatgagcagt attaccgccc cactgttgcg tctgctctcg atcaagcctg agggcttagt
     5041 ggcgatgaac cgtttagatg cggaagaaaa aggcattaaa cacggcgatg tggtgaaact
     5101 cagcacccca accgccggct tgacggtgca gattgtggtg ttggacggta tcgcccgagg
     5161 cacaatcggc atcgaacacg gctacggtca taaacagatt ggggcaagtt cctacaccat
     5221 tgacggcgtg gaaattccag ccaacccgat gatcgccaaa gggattaacc tcaacgacct
     5281 cggcattatc gaccacacca aagcggtcaa atccccgtgg gtagattggg tctgtggctc
     5341 agcggtgaga aatggcattc cggcgaaggt agagaaatta gcctagccga acaagcggtt
     5401 ggttttgcag aaaaatgtgc aaaatcgacc gcttttattg atgtaaggga cactgttcct
     5461 tatgcaaacc agcattgcag agcgtaaaaa atcatactct gcattttaat ttattttgga
     5521 gaacctatga cttttgtcaa aaaaacagca ctgagcctga ttgcaacggc acttttcgct
     5581 acatcaagtt ttgccgctga gcagagccaa taccaacata ttcgtaatgc aacggcgaaa
     5641 attgaatatg ccggcaagac gtttttggtt gatccgtatt tagcggagaa agatcgctac
     5701 ttaccgccga atgcgaaaaa acgtaatccg accttggata tgactgtgag cattgatgaa
     5761 gtgttaaatg gcgtggatgc ggtgatcgta actcacactc accacgctca ctgggacgat
     5821 gtagcacaac aacgtgtgcc gaaaaatctg ccgatttttg tgcagaatgc cggtgatgcc
     5881 cgtttaatcc gttcacaagg ctttaccgat gtgcgtgtgg tcggcaaaga taccccgttt
     5941 gaaggcgtaa ccttaacccg aactcgtggc cagcacggca ccgatgcgat gtatgcgaac
     6001 ccgaaaattg ccgaaatggt cggcgatgcg atggacgtag tgatgaaagc ggaaggcaaa
     6061 ccgaccgtct atttggtggg agataccatt tggaaccacg aaatcgaaca ttcgttcaac
     6121 acttacaaac cagactttgt ggtgctgaat gccggctgtg ccaaactacc aaactttgaa
     6181 ggcagcccga ttatgtgtac cgaagatgtt tccaaagcac acaaaatcgc tccacaagcg
     6241 aaaatcttaa ctgtgcatat ggacgccctg ccacaaacct caatcagcag tgatcagatg
     6301 cgtgattatg tacaaaaaga gggattaaat cgtgtaactg tgccgaaaaa cggtgatgtg
     6361 attaagttct agtagctaaa ctaacattac caaaatggtt taagtagcaa taaatagcga
     6421 agcgggttaa gccatcaagc cttaacccac ttttaccaac catagtatat agttttagat
     6481 ataattatct tctgtattta cctgccattg cttggtaaac cgcattctcg ttggtcaaaa
     6541 tcgcatattt tgcatttaaa atcgccaact gagaattaag ctcggtattc agtgcggtaa
     6601 tccactcacg gaactccgac accccttgtt cataacggtt tttatagtat gaactgatac
     6661 gtttattttt cgcattggta tcttgaagga tttttaacga gcttctcgac tgcgtataac
     6721 tgtaataata acggtcaatt tcatttaagg ctgaggtaat tttttgctca tagtttaaac
     6781 gggcagtcac ataatccgtt tcagaaattt ttacgttatt tttaacccga ttccaatcta
     6841 agaacggtaa atccaattta attaagccgt tacccacagg gttatctgcc acattgccga
     6901 tattggttgc actaccggta atagaaccac cgatggttaa ggttgggaac cagcttttct
     6961 cggttgcggt taaggtttta aatgcacttt gtaagcgttg taacgagcct actacatcag
     7021 ggcgattagc aatggctgac actggcacat ttaaatctac cccttgcaat ttcacgctca
     7081 taatattcgg gtaacgaatg ttaagcggag tatttggctg aacatttaac aaattgcgta
     7141 atgtttgctc ggcaattttt tggttggttt tcagatcaat tacactattt ctggcgttta
     7201 agaccgcttg ttgagcctga tcaaccgcta aactatcaat cgcaccggca ttcattttgt
     7261 tagttaaaat acggctgatt tgctcataat ggcgaatgct ctcttcggta atacgaatcg
     7321 catcacgata gtaagctaac tggtagtaag tagtcacaac cgcattaata atagataaac
     7381 gggtagcttt taagtcttca atggtggctt tatgcgtcca ttctgccgca ctggcggtat
     7441 cggctaaacg tcgccataaa tccacagtat aacttaaatt aaatgcagct tgagctgcgg
     7501 ttgttgaaac accggtcgaa acattatttg aagaagccga acctaaacct ttagccgcag
     7561 aaacagaacc tgaaccacta aaggttggca ctaaatttgc ccctactaaa ttagcgttat
     7621 acaaggcttt attgactgca attccgcttt tggctaaatc aaggttattt ttgatggcta
     7681 aatcaaccac acggtttaat tccgcatccg tatagccttg ccaccattgc tcgttaattt
     7741 gatattgttt ggtaatttca tcatagcttt gataggtttg ctgtgcttgt tgcaaagtcc
     7801 cgtcattgct catattccct gtggtacaag ccgttacggt tagagccaac gccacagaaa
     7861 atgctaattt tgaaagtttc attacatttc cttttgaaaa taaagagggg aaaatgggcg
     7921 tattctaccc aaaaacagat tgcctttcca gttaaatgaa caactgttca tttaattatt
     7981 taacaaatca gtaatcaaat gctgatgacg aatttgttgc gaacctaagc tcaaacgctc
     8041 ggcaattaaa atcgctttta gctctgccaa tgcctgttgg aaatcatcat taataatcac
     8101 ataatcgaac tcattgtaat ggttcatttc cgacaccgcc tctgccatac gtttggcaat
     8161 ggtttcagcg gaatcttgcc cacgcccgat taaacgtttt tccaattctg tttttgacgg
     8221 tggcaaaata aaaacggttt tcacattcgg cactttttcc cgaatttgtc tagccccttg
     8281 ccagtcaata tccaaaaaga catcaatgcc ctgctctagg ctacgttcaa tcatcggcaa
     8341 tgatgtgccg taataattgc caaacacctc cgcccattct aaaaaatacc cttgctcaat
     8401 cagctgctta aactcatcgt gcgaagtgaa ataataatgc acgccgtcct gttctgccgg
     8461 acgaggctga cgggtagtgt gtgaaatcga aagctgtact tccgaacggg gtaaatccgc
     8521 caacaaggcg ttaattaagg aagattttcc tgctccactt ggggcagaaa taatataaag
     8581 attgcctaaa ctcattattt gtatatacct atttgatttt gggaataggg cgaatgatga
     8641 ttcgccccta catttcatag gaataaataa aaaataatgg acaactttca ttgtccatta
     8701 cacaaaatta tctacgtgcc aaaggctgaa cgaaggtaat gcctaaatcc caaggctgct
     8761 caatccacgt ttcttgtgga atatcaatca cataatcatc aaccaacggt gcaccgtgcg
     8821 gtttcgcaaa cacggttaca aaacgagctt tcgggtacat tctgcgaatt tcttttgccg
     8881 tgttgccggt atccactaaa tcatctacca caataaagcc ttcgccatcg gtatcggctg
     8941 cgtgtaacac atttaactca ccttggctat cgtgatcgta gctggcaatg cacactgttt
     9001 ctacgtggcg aatacccaac tcacgtgcta aaacggctgc cggaaacaag ccgccacggc
     9061 tcaccgcaat aatccctttc cactgtgtgg caggtaataa attttctgcc aacttgcgag
     9121 cgtgcatatg gaacatatcc cacgtcacga catatttttc atttgtgtat ttttcactca
     9181 tagaaacaac ctaatataaa attgggggct accccgatat aaaaaattgc actaggataa
     9241 cccgaaaatg cttttttcgc catcatttca tttatttttt tgtgccggca gctacgcaat
     9301 cgtatgctta gcacaaaaaa ccaacactaa aatagctttt ctaaagtgaa aaagacttcc
     9361 ttgttttggc gagagtaaaa atcagcaata ttgctgtcaa ttttttgata acggaaattc
     9421 agcttcggca caatgccctg ccaatgccaa gtgcggttcc aaaccgctaa attggcttga
     9481 tattccgtgt ctaaccgctt atagccaaac aaatagtgct tgtcggcaaa atatcgcttg
     9541 ccaaagccga tacttgcctg cgttgcccag cgttcgcctt gaaaaaccgc ccccactcga
     9601 gccagccact tattcgagct ttgtgctttt tcccgtgcaa tttcacgcac gccgtctaaa
     9661 tttgcaaaaa accgcccatt tttgaccgct tgccactgca caccgccact gagttggtgc
     9721 tgatagctgt tataacggct tgcggttagc tcctcaaaat accgtttttg caaatgggta
     9781 aaactccccg acaccaacca ttgcgaatta aggtaacgca aaccgttgag tgttgcccca
     9841 aattgaacat tataacggct actccccagc caattttgct caataaaagg cgaaaaagtc
     9901 agccaataag cgacggtgcg gtagctataa ttcggcgaaa cggatacgga ttgctcacgg
     9961 taatctcggt tatcccaata gtaaatcccg ctataattga gcgttaaacc gacaaaatga
    10021 ttgcctttca cgttgtgcaa tttactcaac cctaagccat aacgcacgcc ttttgctgat
    10081 tgtggcaaac tgtctgcatt tttgcggaaa atccgcccat ttacattcac aatcggcgaa
    10141 gatgaggcat tattcacgtt atctgtttgg gtatattgca gataaaaatc gggctgccac
    10201 gcctcatttt cagcaatttg gacttgagta ttgcgggcaa ttttagcaag ttccggcggt
    10261 aaatgggctt gaatagcctt aaattcctgc tctgccgcac gaaattgctg atcttctgcc
    10321 aaaatcaacg ccaaatcaaa acgagggtaa accaaactcg ggggcttagc taacagttgg
    10381 cgatagtgaa aaactgcggt ttgatgatct tttttcgcat aggcaagtgc ggcttgcgca
    10441 tagtgccaca acaacgggtc aaaattttca gtttgcggat aacggcttaa aagcggttca
    10501 agcgttgccc aatcttggct gagaatcgct tggttaattt gctgttcaac attctgattg
    10561 actgaatacg caggctgata agcggtcggt ttttgtgaat tttttacaac attttgctca
    10621 aatttaaccg cttgcggctg acgctcaaag gaaatcgggt cagtgttgtg ttcaatcacc
    10681 ttttctgccc atacaacggg gctgaacagc gaaaataaaa ggggatattt tttcataaag
    10741 ataaagaaaa ttggtagggg cggacctata tgttcgcctc tacgggattt atcactctct
    10801 ccccttgtgg gagagggtta ttagaagctg taaattgaaa tctaaactat tgtgtcttat
    10861 ggtatctaca agcaatatca agacaaatgc cgtttaattt ttcgttaaac ggcattgaac
    10921 gttagaaaag gttatttttg gatatcgcca cgagtgccgg caagtccaaa attactcact
    10981 tccccagtaa gatttgcttt tgtctgaatt tcaccggcaa tttcctctgc atttttaccg
    11041 aaaaattcga ctgtatattt tccagaaagg tttaaaggat tattgccatg tactgttgaa
    11101 gaaatctgag tattattaat cgtcccctct tctaatacga ttaagtttcc aaattctccc
    11161 tcaactctac ctgaaccggt acgcttagag aaattaacat tataggttag atcaccacca
    11221 ttaaaacctt tagctccatc gtggttaaat gcttttcctg aatatgttgc agtaccctct
    11281 gttggtaatt tctctgtttt caatccttta actgtaactg ttccatcaac tttatcaata
    11341 taattaccgt tttcccagcc atttctttga actgcttgtg ctgttactac agaatatggc
    11401 tgattatata aataactctg tgttctgact gtgactttac cctcaatagt ttctttacta
    11461 ttaccaagtt ttaagccgta atttgtatca tcaatacctt ttgctttaat aatagctata
    11521 ggatctactt ctttttctgc tgctaaacgc tccgcttccg ctttctcttt cgccgctttt
    11581 tccgccgcta aacgttctgc ttcggctttt tctttcgctg ctttttccgc cgctaaacgc
    11641 tccgcttccg ctttctcttt cgccgctttt tctgccgcta aacgttctgc ttccgctttc
    11701 tctttcgccg ctttttccgc cgctaaacgt tctgcttcgg ctttttcttt cgctgctttt
    11761 tccgccgcta aacgttccgc ttcggctttt tctttcgctg ctttttccgc cgctaaacgt
    11821 tctgcttccg ctttctcttt agctgctttt tctgctgcta aacgttctgc ttctgctttc
    11881 tctttcgctg ccttgtcttt tgctgctttt tctgctgccg ctttatcggt ttgttgctga
    11941 gtagtttgcg gtttagtatt cggttttgcc acattgtttg agctactgcc cgaaccacca
    12001 ctactacacg ccgttaaacc caataaaatc aaactggcta aagttacttt tttgatagac
    12061 ataaaatgtt ccttttgtaa gataaacaaa aatagatgtg tataaaacac acgcatattg
    12121 tacaaaaaaa aaacaactcg tcatcaagta ctttttaaga tttttttgtt aaatttctcc
    12181 taaatattct acaatgtcag aggtctatat cagcttgaat acaagcggtt attttttctt
    12241 aaaattttac aaaaggggct tattatgtct gaaatctcaa cgctcgcacc gcagctactt
    12301 tggcagtggt ttgataaagc ctgtgctatt ccgcacccgt cttaccacga aaatgaactg
    12361 gctgaattta ttgtgaattg ggcaaaatcg aaaaatttct ttgttgaacg tgatgaagtg
    12421 ggtaatgtgt taatccgtaa accggcaact aaaggtatgg aaaaccgcca aactgtcgct
    12481 ctgcaagccc atcttgatat ggtgccacaa gccaataccg gcacggttca cgatttcact
    12541 aaagatccga ttcagcctta tattgacggc gaatgggtaa aagccaaagg cacaacattg
    12601 ggggcagata acggcattgg attggcttcg tgcttggcgg tgttggatag cgatgattta
    12661 gcccacccaa ccattgaagt gttgctcaca atgaccgaag aagccggtat ggaaggggcg
    12721 attggtttac gcccgaactg gctaaccgcc gatattatga ttaacaccga caccgaagaa
    12781 aacggggaaa tttacatcgg ctgtgcaggt ggggaaaatg tgaatgtgac actgccaatt
    12841 ttcttggtgc ctcatcagca agatagtgca gtaaccgtta cgcttaaagg cctaaacggc
    12901 gggcattcgg gctgtgatat tcacaccacc cgagcgaatg cgattaaagt gttcgcccgc
    12961 attttggaac aagcccacaa cgaagtggaa ttccaaattg cagaaattca aggcggttcg
    13021 gtgcggaatg ccattccacg agaagcccac gcaaccttgg ttttctctgc aaaaaatcag
    13081 caaaaattaa ccgcttgttt aagccaaacc gccgaacaag taaaagcaga actcaaaatt
    13141 gccgagccaa acttccaatt tttaattgaa gaagctcaac tgcctgagca agcctttgac
    13201 cttgccagca ctgctcgagt aatccatttc ttaaatgtga tgccaaatgg tgtggtgcgt
    13261 aatagcgatg tggtggaaaa tgtggtggaa acctcactca gtattggtgt gcttaacacc
    13321 gaagcgagtg aggtgaaagc gaccattctt gcccgctcat taattgaggg cggaaaagag
    13381 gaaattcgca gtaaaatccg ctcattaacc gcattagtgg gagcagaagt ggaattttcg
    13441 ggcaactacc cgggctggga gccaaaccca aattccaaaa tcacgccatt aaccaaagcg
    13501 atttatgatg aaattttagg ttatgaatct caaattaaag tgattcacgc agggctagaa
    13561 tgtggcttaa tcaacaaaat ctacccgaat atggattttg tctcgattgg accaactatt
    13621 ctcaacgccc attctccgga cgaaaaagtg catattccgg cagtggagat ttattggaaa
    13681 ctcctaacca aactacttga acaagcacct gagaaataaa tttaatcaaa aaaattatat
    13741 aatcttgccc cgtaattaat tgaataaaac ctcaattaat tacggggtag ctcttatttt
    13801 ctctgtttta aaaaatgtac cgtgaaagca gcaattaata agacgactgc tgcacctaaa
    13861 taaagctcgt tctttttcca gccggcgtct aataaaatac ctgcaagagt tggggaaaca
    13921 attgagccta aacgccctac accgatggcg gtgcctacgc ccgtgctgcg gaaatccggt
    13981 gcgtataggg ttgggttaat ggtataaagc ccggtaatgc agccgttaat taatccgcca
    14041 accaaaatgg ctagtgttat cgcaagccct aaattgccgg caaacacaaa ggcaaccaca
    14101 gcagatgcag ccagaatact gaatgcctgc aaaatatgtt ttgccgccca gcgactgact
    14161 aaaaagccga aaattaacga gccgattgta ccaccaactg aaattgccat tcccacagtt
    14221 tggctttggg ttttaggcat tccggcttct tctaatagtg ccggagtcca agagctgata
    14281 aagtaaaatg aggctgaaat tgcaataaag gcaagccaaa ttagcaacgt attgcggcga
    14341 tattcaggct cgaataaacg ggtaattgcc actttgcttt tactttttgc ctcaatttca
    14401 ggaagttccc agccgtttcc taagcctaat ttaacggcaa tttgatttaa acgagcttta
    14461 gcattcaccg ggtgttttga aattaaaaat tccaccgatt cgggcaatac aaagaataat
    14521 aaaacgaata ccgcaccggt taaaatcgac ccaacgagga aaaccgcacg ccagccatat
    14581 tctccttgca ataacaccgc agacattccg cccagcattg caccaatccc aaagcctgag
    14641 gcataaattg caatcgctaa gccacgccat ttttggctgg agtattcact cactagcaca
    14701 ttagtgccgg ttaaaatggc ggctacgcct aaaccggtta aaacacgcca tacaccaatt
    14761 tcaaacgcag aagtagcgaa ataagttagg agcattccta acgtggctaa gcctgtgccg
    14821 attaaaagca acgggcggcg accaaattta tcagcaagtg gtgaaagaaa gagtgagcct
    14881 atcgccatac cgaataaacc ggcactcatt aagctgccga tggctgcacc gtctaactgc
    14941 aattcttctc ggatgctttt ggcggtaaag gcgagtgcca ttaaatcaaa gccgtccagc
    15001 atattaagta acaccgtaag cccaaccact aaccattgga atgaagtcat tttgttatga
    15061 gcaatttttt gacgaatatc cataagctcc ctctgcatca aaattgataa aattttattt
    15121 agagtgaact atagaaagtt gattaaatat aatcaaactc aaaatttaca taaaatttat
    15181 gaaagatttt catatttaat caaaggaggg aatttatagc aggaatggcg agggagaaaa
    15241 tagatagggc gaataattat tcacccctag attgaatagg agaaagctat ttcttctccg
    15301 cttgctcagc cgctcttttg cgtctgattt ctttcggatc agcaattaac gggcgataga
    15361 tctcaattct gtcgccttct tccaccgttt cattcagttt tgccgggcgg ctaaaaatac
    15421 cgactttgtt ttcacgcaag tcaatttcgg tatatttttc caacacgccg gagagcaaaa
    15481 taatagtttg aatggtcgcg ttttgcggta cttgcagttt tttcagaaaa tatttatcag
    15541 ggtaagcata aagcacctca acattaattt tctgttcttc acttttttgt tcttctggat
    15601 tttgacgttg ttcagacacc atacacctct tttgcacgtt gtttgaaagc atttaccatt
    15661 tttaaagtta attcgttgaa caccttgccg aacaccattg ctacaattgg gctggaaaat
    15721 tcaaaattta attgcagggc aattttgcaa ctttgctcat caaagggggt gaatgtccaa
    15781 gctccgtgta aatggcggaa aggcccttca attaatgcca tctcgatttt atagggcggc
    15841 gtcattttat tgtgggtact gaaagtttgg ctaatgccta atttctgaat gtgtaactct
    15901 gcctttaatt cattttcgcc ggtgctaagg gttttggtac tcacgcagcc ggataaaaat
    15961 tcggggtatt tttcatactg attaacaagt tgatacattt gctcggcact ataaggcacg
    16021 agggcagatt gattaacgat tggcataatg tctcttttgg gaattaacaa gcggtcatat
    16081 tttagcgtaa atttgcaagc ctataaagaa acgcttttga tttgaagata gacctcttgc
    16141 tccggttgaa tcgctaattc attaaaagac caaaggctga tcgtactcca aatttgctga
    16201 ttttcgactt gaattgccag atcaacccga tctaaatgcg tttctatttt ccgaacattg
    16261 ccttttaaca cattacgaat tgagctttga gtcggttttt gtaagctgat tgaaacctct
    16321 ttgctggcaa tagttaccct tagcttctcg cctatttgat ggcgggggag ttggttcacc
    16381 cataatcgct gtgcgttcaa gctcaagcca agcatattat agtggggaag tgtttcttcc
    16441 accggtaatt caagcaggct aattcgctga tgatttggct gccaagcgga aaatgccgag
    16501 ctgtgccaaa ccgctgaaag ggtatcaaat gcggttactt tgccgttttc caacagcaca
    16561 agatgatctg ccaatcgaac tacttcctct aaactgtggc tgacatacag aatcggtatt
    16621 tcaagccgag cggataattt atctaaatag tccagtagct cttgcttacg agggagatcg
    16681 agggcagata atggttcgtc catcagcaaa atattcggtg agcttaataa cgcccgccca
    16741 atcgccacac gttgtttttc gccaccggaa aggcttgccg gatagcgatt aagcaaaggg
    16801 gcaatgccta acagttccac aatttgcaaa aaatccgcag aatccgaccg cttgtagcca
    16861 tattttaagt ttttttccac cgaataatga gggaaaaggc gatgctcttg aaacacatag
    16921 ccaatgttgc gtttttcagg tggtaaattg atgccgtttt ggctgtcaaa cagcacctga
    16981 ccgtttaatt cgataaagcc ggcttgagcg gttgaaagcc ccgcaattaa attaatcagg
    17041 ctggatttac cggcaccgga acgcccgaaa atagcggtga ttcctttatt cggcaaatcg
    17101 agattgacat tgagcgtcag attgccgagt tgctgaagaa gtttaagttt gagcatagcg
    17161 tttttgcctt tctgccagcc attccgaaca gaacagggca atgagtgaaa tcagaatcgc
    17221 caccaagcac aaacgggcgg cagccatttc gccatcgggg gtttcaataa aggtgaaaag
    17281 ggcggcagga atggtttggg tttggttggg aatgttggag acaaaggtga tggttgcccc
    17341 aaactccccc aaagagcggg caaaacccag cacgccaccg gcaataatgc ctgaaaaaga
    17401 gagcggtaaa gtgagcgtga aaaacacttt taacggtatt gctccaagcg ttctggcggc
    17461 ttgctccaat ttaggatcaa ctgcctcaaa ggctaaacgg atagaacgca ccattagcgg
    17521 aaacgccatc accattgagg caagcactgc tcctttccac gaaaaactca agctgaaatg
    17581 aaaccattcc cacaaatatt gcccgattac ccctcgtttc gccatcgaaa taagcaataa
    17641 atagccaatg acaaccggcg gtaacaccag agggagatgc ataataccat tgagcagatt
    17701 ttttccccaa aactgtttgc gggcaagcag ccacgccacc cacacggcaa gcggtaatgc
    17761 aagcactaca gcaatggagg caacttttag gcttagaaca atcgcattga gttcttgtgg
    17821 ggtgaaatta agcataatct aaaactattt ggttataagc ttaccctcgc cccttgtggg
    17881 agagggatag atttttcttc gttcagaaga aaaatcaggg agagggggaa tattttaaac
    17941 gctatttgcc ctctctctga aaaatatgtc tgaacgacat atttttctgt ctctctccca
    18001 caaggggaga gagtaaattt aatttacagg ataaaaccca gctgcctcaa atttcgcttt
    18061 tgctttcggg gttttgagaa aatctaaaaa tgtggcggca gaggcttttt cactgactgc
    18121 cgcagcaggg taaacaattt cgccgtagct ttccggtggg aaaacggcaa ccactttgac
    18181 tttattcgac actttagcat cggtggaata gacaatccca agtggggatt cgcctcgctc
    18241 gacaaaagag agggcatctc gtacattttt tgccctcgct aaacgaggtt caacactttc
    18301 ccataattgg taatgactaa gggctttttt ggcatatttg ccggcaggaa cgtggtttgg
    18361 gtctcccacc gataaatagc tgtttgctaa ttctttggca aaatcgaccg cttgtatcgc
    18421 ttttggctca atgttacttt cggtaggtgc aattaatact aactcgtttc tgactaaatt
    18481 gcggcgatgt ttaactttct caggttgttt ttcggcaaca taatccatcc acttttggtc
    18541 ggcggaaata aaaatatctg ccggtgcatc ttgctcaatc tgctttgcta ataccgatga
    18601 tgaagcgaag gagaacgtga ttttatcctg tggataggct ttttcaaaat cctgctgaat
    18661 atcttgtaac acatttgtca ttgaagcggc agcaaacacg gtaatctctt gtgaaaaggc
    18721 tgtgcctgat aacgttaatg ccattgtaat tgctagtttt tttaatgctt tcattttcat
    18781 aacctcacaa ttagttaaga acgcagccca acccctcgtt gaattaagga ataggcaata
    18841 atatacaagc cgatgcaaag tgaagtaagc actgcaaaag tataacctaa cggcacatcg
    18901 ctgataccga gaaagccata tcttaagccg ttaatcatat aaacgatcgg gttgaattta
    18961 gacaccgttt gccaaaattc aggcagtaat gaaatagagt aaaatacgcc gcctaagtaa
    19021 gttaagggag taagcacaaa ggttggaatc agccccacat catcaaagga gcgggcgaac
    19081 accgcattaa ttacgccacc taacgcaaag gcaatgattg tcagcaacag ggttaagacg
    19141 ataatcgcaa ccgagtagat ttcaaacgag acaaacacca ttgccacgca cattactaag
    19201 gttgcggcta aacctgcacg caaaatactg ccggtgacat aaccccaaat aatattatgg
    19261 gtagagagtg gcgaaatcag catctcttca aaatctcggg taaatttact caagaaaaat
    19321 gaagaggcgg tattcacata agaggcggtg atggcggtca tcataattaa gccgggtgca
    19381 ataaattggg tgtaacccac gccattcatt tccccgattc gcccaccaat cagcgtgccg
    19441 aagattaaaa aatagagcgt ggtagtaatc accggtggca ctaaagtttg tcgccaaatc
    19501 cgcaaaatgc ggcggcactc tttgtaagct aaggtataaa atccgattaa attcatttta
    19561 ctgagccata ttgataaata gttcttccaa gcggtttgat ttgtttcgca tacttagcac
    19621 ctcagcccct tgggcggaaa tttgcgaaaa cagattggtt agcccttgct ggcgttttac
    19681 attcacttca agggtgtttt catcaagcca tttatgcggg taattttgaa tcacaagcgg
    19741 ttgattttgc tcagaatttt gcaaatctaa cacaaatacc tcactttcca atttggcaag
    19801 caaggctttc attgaggtgt tttcaattaa ttcgccgtgt tgaataatgc cgatgtgacg
    19861 gcatagggtt tccgcctctt ctaaatagtg ggtagtgaga ataatagttg tgccttgatt
    19921 gtttagatcc cgcaagaaat cccacaatga gcggcggagt tcaatatcca cccctgcggt
    19981 aggttcatct aaaatcagta gttttggatt gtgcattaag gctcgggcaa tcatcacccg
    20041 acgtttcatt ccaccagaaa gctcacgggt gaggtgggtg cgtttttccc ataggtcgag
    20101 caatttcagc cacttttcgg cacgtactaa ggcttcactg cgaggaatgc cgtaaaaccc
    20161 ggcttgttgc actagcacat caatcacttt ttcaaactga ttgaaattaa actcttgtgg
    20221 cactaagccg atttgatgct ttaattcgac tttttgggtg tctaaatcat agccaaacac
    20281 tttcacgctg ccgctggttt tatttaccag tgagctgata atgccaatag tagtagattt
    20341 acctgccccg ttatgcccaa gtagggcata gaaatcacct tgctcgacca caagattaat
    20401 gcctttaacg gcttttacac ctgttgggta ggtttttacc aaatcaatta attctaatgc
    20461 tttcatttgt tttactcagt ttccgccacc gctcgaatgg tcgattcatc aatttgtgca
    20521 tcaaaagcgt tgcgaagtaa cattaatttt tcatcgttaa gcagagctga ttttgctgcc
    20581 tcagttaatt gtttgaaaat ggctcgccga atttcaagcg gagtttgctg ttcgctattg
    20641 tcaccaatgg tcaattcgta tgaatagcct ttttcggcaa gggcagcttc taaattttta
    20701 cgtgattccg gattatctaa gtgagccata ttcggcttta acaccaatgc gaggtgctgt
    20761 tcattttgtt ccgctaaata gctatttaag gcgatctgac gggaaaatcc gcctaaattg
    20821 agtgagttgg cgatgtcaca ccatttatcc tgctgacaag ataaatgaat ggtttttgcc
    20881 actaattcag gggtgcgttc ttgcaaaatc gcttgtttaa tatcagaagg tttggcactg
    20941 tctgcttgat tttctaattc aggattgagc cacgtccagc gataatcttc atcttccaca
    21001 cttttagggg cggattcggt tttctttgaa acttgcagta cggctttgtg ctgattttcc
    21061 gccaagctga taaaccgctc ttgcaatgaa gcggtctgat ttgccgattt ttttgcaata
    21121 acttgagggg cttttagctc aggctttttt ttttcggttt gagctaaatt tgcctgctgt
    21181 gcttgtagct ttttgcgggc ttcgagggct gccattgccg gtgaaagagt cgcaggagca
    21241 gacggcgaaa tagcggtatc tactgcctgt ggcggttgag caatgctttc aaccgctgtg
    21301 gtagtattgg caacagtaac cgttttttgc tgattttgct caaaattttc tcttagctgg
    21361 ctaatttgat tttgtggttt tgctgtcgta accgctgaaa ccgaatggtt tggttgtgta
    21421 accttttcca ctgcaactgt tgctattttt tctgcctgtt tagggtggaa agccaacgca
    21481 cgcaaaatcg ccatttcaac accggcacgt tgctccggtg caaaaggcaa ctctttttta
    21541 ctgttgagga ttaattgata gaaaaattgc acgtcttcgg gcggaatttg ttttgccaga
    21601 aaatgcacta atgtttcttc ggttgtaggt gttttcacta attgcaacat tgcaattttg
    21661 tgtaacactt ctgccacatc gcttaataat tgttgccaat caacgccttt cgctgcaatt
    21721 tgctcgatga tcgccattgc tttttcaccg tcggcttggg cggttgcttg cactaattct
    21781 agtggttgat tatcgtcaat caaccctagc atttggctga ctatcgcaag cgtaatattg
    21841 gcattactca ttgcaatggc ttgatcggtg aggctgagag agtctcggat actaccttgt
    21901 gctgcttttg ccaacttttc tagtgccaaa ggctcaaacg gaatgttctc tgcatttaga
    21961 ataaattcaa gatgacgggc aatttgcgat tgctctaatg cccgcagatg aaattgcata
    22021 cagcgagaga ggatcgtaat cggcagtttt tgcggatcag tggtagccag caagaatttg
    22081 acatattcag gcggctcttc aagggttttt agtaaggcgt tgaaactatg acgagagagc
    22141 atatgcactt cgtcaattaa ataaacctta aaacgcccaa cggtgggttt gtattgaacg
    22201 ttatcaagta gctcacgggt gtcttccact ttagtacgag aagcagcatc aatttcaatg
    22261 agatcgataa aatgcccttc ttcaatcgct ttacaattcg cacattcacc gcaaggctcg
    22321 gcggtgatcc cgtttacaca gtttaagcct ttggcgaata aacgggcaat agaggtttta
    22381 cccacaccac gagtgcctga aaacaggtaa gcgtggtgca gtctatcttc tcttaagctg
    22441 ttttcaagag cagataaaac gtgttgctga ccaactactt ccgagaagcg ttgcggtctc
    22501 catttacggg ctaaaacttg ataactcatt gatttttcta ttcaatttgg aaatcacaag
    22561 cggtcatctt tccgaaaaat tttgcaaaat tttagcaaaa agccaccgct tgttccccat
    22621 taatgacctt caaagctgac taggctaaag gatttaaccc cttctttttc caaacgctct
    22681 ttaccaccta actcaggcag ccaaatcaca aaggcagcgt gttctacgtt accacctaag
    22741 cgacgaatta gttttgcagt tgcatcaata gtaccaccgg ttgcgagtaa atcgtcgatg
    22801 accaatacat tatcattagc actcactgcg tctttatgaa tttctagcgt gtcttcacca
    22861 tattcaagcg tgtaagattg cgaaatcact tcacgtggta attttttcgg tttacgaacc
    22921 aacacaaaag gcacgcctaa cgctaatgca acaggggcac caaaaataaa cccgcgagat
    22981 tctgtgccga caattttagt aatacctttg tctttaaatt ctgcaacgat ggcatcaatg
    23041 gtggcttgga atgcagttgg cacttctaaa agtgaagtga tatcacggaa gataatccct
    23101 gctttcggat aatctggaat ggatttgata gaagatttaa ttaaatctaa ttggttcatt
    23161 gtttgaccta cgtgtaataa aaaaataact ggaaaactct atagaaaaac agcagaaatt
    23221 tcaaggagaa attgataacc ttacgtttga tagtacagct tacttttcag tttccttttc
    23281 cctatattat agataaatat cttccctgtt tcgtctggtt ttaagcaaac gtaaaatcca
    23341 aacatactgc tcggggtttt tctccacaaa atattcaatt actcggttca tttctcgggc
    23401 ggattgaatt gggtctcctg aaaattcaag cggtggcaaa atttccattt catattttgc
    23461 tttttccgca ttataaatcg agaacattgg gatcacttcc gcatttgcca ctcttgccat
    23521 tttatttaag cccggcaaag tggctttttc ggtggcaaaa aagtcggcat acacacttag
    23581 ctcttcgccg aaatcttcat cgggcagaaa ataaccaaca tcacctttac gcacatcggc
    23641 taaaaacgct ttaatcccat tttgacgagt gtgcattcgc ccacctaaac gctcacgggt
    23701 aatattccac agccagtcca ccaacgcatt acggtgtgga ttgtacattg atgtcatcgg
    23761 ataaccgagc gagaacatcg ccacccccgc catatcaatc gaccaagtat gtggcactaa
    23821 cataatcacg tttttaccgc tctctttggc tttcaccaca ttttcaaagc cggtaaattc
    23881 acaccgtttt tgtaaataag aggccgggcg gattgcagtt tcgccaatcg ccaacatggt
    23941 ttgtgctacc gtgataaaca ttttctcgac cacttcttca cgctttttct cactccaatc
    24001 gggaaaacag taacgcaaat tcactttagc acggtggtag ccttttttat ttttctgctt
    24061 gagatagcga tacgccatct tacccacaaa agcggataat ttatccctaa ttcgcaccgg
    24121 cacataggct aaaatcacta atcctaatac acctaaccat acgccccaat atttcgggtg
    24181 tagaaaagac cataggaatt tgtgcgtata gccgtcttgg gcggtaattc gtgtcattct
    24241 ataattcctc attatttgtc actttctttg cttcgccaaa gaaagtaacc aaagaaaggc
    24301 aaccctactt caccgctatc ttcgcttggt ttgaatttgc ttaacgaaaa aattccaaac
    24361 tcgccgcttc gctgctcaaa caaggaattt ttcctacaaa ttcaaagtcg ttcgggcggt
    24421 tcagaaggga acccggcaga gcatcatttt gcaaaatttt ccaaaaaaat caccgcttgt
    24481 atggtcggat cgggttccct tctgagttgc ccgaacgact tgaaattttt aggaaaataa
    24541 ctcgagcgag agcgaagcga acatcagggt tatttttcgt taagaaaatt tcaaccaagt
    24601 gaggatagca acaaagcagg gtgtgctttc ttttggttac ttttctttgc acaagcaaag
    24661 aaaagtgaca taacacatca tctcttatca ataatattct tcaccgccaa tatcacccca
    24721 agtccaataa aagcccccgg aggtaaaatt gccagtagta aacctgaatc aatatgcaat
    24781 acatcaatgc gtagggcttt tgcccaatcg ccaaggagta gatctaagcc tgaaaacagc
    24841 gtgccgttgc caataatttc acgcaacgcg cctagcacca caaggctaaa agtcattccc
    24901 agccccattg aaaagccgtc aaaagccgag aatttgacct cattttttga ggcataggct
    24961 tctgctcgtc caatcacgat acagttggtt acaatcagcg gaataaaaat cccgagcgat
    25021 tggtaaacag ggaaagcaaa agcattcatt aaaagctgta ctgccgttac caccgttgca
    25081 attaccatca cataaatcgg aatccgaata tcgtgtggag tgattttccg aaacagggaa
    25141 accgtgatat tggtgcaaat tagcacaaac attgttgcca agcctagtcc aagtgcattg
    25201 gttacgctgt ttgaaaccgc cagtagtggg caaagcccta ataattgcac caaagcacca
    25261 ttatttttcc acacaccatc agcgaaaatc gttttccaaa cgctggattg tttcggggca
    25321 acgtcaatat tcgtcacagg gatttgttgt tctctttcca tttctccccc tatttgcacg
    25381 ctttaaattg attaaacatt gtcgggtttt gagccagctc tgtcaccacc catttcgcac
    25441 tttggcggat atgattgacc accgcacgag gtgtaatagt tgcaccggta aattggtcga
    25501 acttgccgcc atcttttttt acattccaat ccgcttcgtt ttctaaacta aaaagttgat
    25561 tggtaaaaga taagatccaa tccgacactc gggtctcaat tttatctccc agccccggag
    25621 tttctttatg ctcaagggtg cgaacgccta aaatgttgcc gttcggctca atccccatca
    25681 atagcacaat atcgccggaa tagccgtccg gagccgttcc ttgaactagg taagcggtca
    25741 gattttccga tttttttgca acataaatac ggttcaaata aggggcattt tcgagctgaa
    25801 ccagtttgca agtcgccaac acatcattat caaaatggct tttcggcaca acctcttcca
    25861 ataatttgcg ttgttgcatt gcggttacat catcaatctt gcctttggta agcaggtaca
    25921 caccggttga aacagcggtg caaagcaagg caataaagcc taaaattaag gcgtaattta
    25981 aggtaatttt tgaggtgttc attatctgtt atccaatttt gtgccgtata atctcggctg
    26041 cgtataatgg tcgattaacg gtacgcaaat gtttgccaat aacactgaaa atgcaatcgc
    26101 atcagggtaa tttccgtagt agcggattag ataaaccaat aatcccacca agccaccgaa
    26161 aatcagtttt cctcttgggg taatggaggc tgttaccggg tcggtcgcaa taaaaaatgc
    26221 cccgaacatc atcgcaccgc taaagaaatg gctcacaaaa tgcaagtgcg attgttggct
    26281 aaacagctcg gtgaatccac taaaaaaggc aaaagttgcc aacattgcta ccggaatttg
    26341 ccaatggata atccgtttat aaatcaacac caaaccgccg aataagaacg caaggttcag
    26401 ttgtagccaa ccggtcgcaa acagcccgtt gaaaatcggc gtattcatta ccgcgtcaaa
    26461 acctgatttt gcaaggctgc ttttcatact atcaagcggg gtagcttgtg caatgccatc
    26521 aacactatta actagctgat gaatactaaa accatcgcta gttaccccgt aaaaaatcaa
    26581 cgaaatcgca tcacgaaatg tcggtggttc acttaataac tcaatcggca ctatccacgc
    26641 cgtcatttgc accgggaaag aaaccaacaa caacgcatag ccaaccattg ccgggttaaa
    26701 tagattctgc cccaagccac cataactgtg ttttgccaat aataacgcca caatcacgcc
    26761 aatcaacaca agccaataag gagcataagg cggaatcgac atcgccaaaa tcaaggcggt
    26821 taaaatacct gataagtcag ccaaatagaa agcggttgtt tttttgcgta attttgcaat
    26881 cccgatttca atcacaatcg caaggctaac ggcaagcaac gtttgaatca gcacaccata
    26941 gccgaaataa taaagctgaa ccccaaaagc aggtaacatc atcgcaatca cccacagcat
    27001 aaaattcgca gtgagattgc tcgaatgagt gtggggggaa ctgaccattt taaacatcta
    27061 taaaaccttt ttagtaaaaa attgcaaaaa aatgaccgct tattaaagtc tcggcaaatt
    27121 caaattaaag cgtattgcca gcaggcggat aataattacg gtgaacacgg tggcaaggta
    27181 aacccaatcg ctttcgagcc caactgagtt tgcagccaca aaaatcacac caccgataag
    27241 gctggcggtc acatacactt ctttttgcaa aatgatcggc acttcgttgc gtaaaatatc
    27301 acggattaag ccaccaaaac agcctgtcac accgcccaga gccacacaga tcagtgggtg
    27361 caagccgaaa tccaagcctt tttgcacgcc aatcacggta aatacgccaa gcccgatggc
    27421 atcaaacacc agcaagccgg tttgccaact tttgcgggaa atttggttgc ggaaaatagc
    27481 ggtaatcacc actgcaaggg taatcatcag cacatagatc ggttgtttca tccaaaacac
    27541 cggcgtggag ccaatcatca tatcccttag cgtaccgccc ccgaccccgg tcacaaacgc
    27601 taaaataaac ataccgaaaa tgtccatttt gtgctggcgg gcagcaattg cccccgaaat
    27661 cgcaaacacg atagtgccga ttaagtcctg aataaacagg aacgaccacg gcaatgccgg
    27721 aattagctcg ctaaacattg ttgcttttct cctgctgagc ggcttttttc gctttagctc
    27781 tggcgatggc ggccgcaacg gcggctttgc gtgggtcttc gctttccgtt ttgggcgaat
    27841 ggttattcgc ccctacagat ttatccgatg tagtttcgtt cattgattgt aggggcaaat
    27901 cattatttac cccaatcaca gcattggcaa tatcttccgg tttttcgacc gcttgttgag
    27961 cttgtttttt cgctttagct ctagcgatag ctgctgcaac ggcggctttg cgtgggtctt
    28021 cgctttctgt ttcgggcgaa tggttattcg cccctacaga tttatccgat accgtttcgt
    28081 tcattgattg taggggcaaa tcattattta ccccaatcac ggcattggta atattttctg
    28141 atttttcgac cgcttgctgt gcctgttttt tggctttggc tcgggcaagg gcagccgcaa
    28201 cggcggcttt gcgtgggtct tcgctttctg cttcgggcga atagttattc gcccctacag
    28261 atttatccga tgcagtttcg ttcattgatt gtagaggcaa atcattattt gccccaatca
    28321 aggcatttgt aacattttcc gatttttcga ccgcttgttc tgcctgtttg gctaaacgtc
    28381 tggctctgcg ttgtgccatt aaatcgctgt tatcaggctc gccgttaggt tttacctgta
    28441 cttctgccgg tatttcttgg actgtttcaa ccgctttttt cgctttcagg cgttcaagag
    28501 ccgcttttac aggatcaaca ccacctgcat ttgccacttc ttcacggcgt ttttccgccg
    28561 cttggctaat gcgagcagtt ctggcatctc gttctttttg taagcgagct tctctcgcct
    28621 caaagcggat tttagcctct tccgctttgc gggctttttc ctcaatttcc tcgatttttg
    28681 ctttttcttg gcggaaatat tggattaacg gaatgtagct tgggcaaacg taagcacaaa
    28741 cgccacactc aatgcaggca tctaaatggt attctttcga tttatcgtga tcttctgcac
    28801 gggcaaacca ataaagttgc tgtggcaata accccaccgg gcaagcatcg gaacagcttg
    28861 aacagcggat acaactacgc tccggttcag gtggtgcata ttcaaaatga tcaggggcaa
    28921 tcaagcagtt cgcagttttg gtaatcgggg cttgcaatgc aggcaaaata aagcccatca
    28981 tcggtccgcc taaaaacacc ggaaagcgtt tatcggcttg ataatctacc tgctccaaca
    29041 agtgctgaat tggcgtgcct aatcttgccc acacgttccc cttgttgcga attttatcgc
    29101 ctgtcagcgt cactacccgt tcaatcaaag gttcatcatc aataattgcc cgtttaaccg
    29161 caaacgccgt gccgacattg tgcatcacaa tgcccatttc aatagtgcgt ttgccagccg
    29221 gaatctcaag tccggtcaac acttgaatca gctgatcaga agctccggag ggatatttag
    29281 tcgggatcgc ccgcacaaac atatcgttcg agccttttaa agcggtttct aaagcttgaa
    29341 tagcgtgcgg tttgttgtct tcaatcgcaa tcaccacttc ttccgggcga agcacataac
    29401 gcagaatgcg aataccttcg ataagatccg cagtgaaatc ttgcattaag cgatcgtcac
    29461 aggtgatgta aggctcacat tctgccccgt taatcaccag taatttacag cgtttatccg
    29521 ccaaacttaa ttttgttgcg gttgggaata ccgcaccgcc taaaccggca atgccatatt
    29581 ggtaaacttt ttggataatt tgatcgcttg ttaggcttaa aaaatcctca atcggctggc
    29641 gttccaccca tttatcttta ccatcggttt caataatcac cgttatttcg ggcaaacctg
    29701 aggcgtgagc ggaaacataa ggctcaatcc caatcacccg cccggaggtt gggctgtgta
    29761 cgggcagttg acggaagtga tcgcctttcg tgagcggctg ccctttcaat accacatcgc
    29821 cgactttgac taataattcc cctgcccagc cagaatgttg aaccagtggc acatagaaaa
    29881 acttcggtaa atttaaggtg cgaattggct tgctgtttga ttgggattta ttttccatcg
    29941 ggtgaatacc gcccgggaaa tcccacagtt tacccgtttc tttattttgg cggattcgct
    30001 caatcactaa attaggattg ctcatttttg cctccgccgg taactaattt tctctgcaat
    30061 tcagtggtat tcacaatcgg aataattaaa tcttggtcaa atttccagtt ccaagattgg
    30121 gttgtcggtt taattggtcg catttcaata cagttggtcg ggcaaggggc gacacaaagt
    30181 tcacagccgg tgcaaagatc cggaataatg gtgtgcattg ctttattcgt gccgataatc
    30241 gcatcaaccg ggcaagcctg aatgcactta gtacagccaa tgcagagatc ttcaatcaca
    30301 aaagccactt tcatctcagg ctctgccata ccttccattg gcggcacttc taccccaagc
    30361 aattcggcaa gattcaccac taaaggttgt ccacccggca cacatttagt gatcacatca
    30421 ccattagcaa tcgcctcagc ataaggctta cagcccgggt agccacattg accgcattgg
    30481 ctttgtggta aaagggcatc aatttgatcg acaatcgggt cggattcaac tttcagttta
    30541 atcgaggaat agcctaaaac cgccccgaaa atcagtgcga tcacagcaat agcgataaga
    30601 atataagcga taattggcaa atcaagcatt agagtttcac caatcctgta aagcccataa
    30661 aggcaagcga catcaagcct gcggtaatca gagcaattga tgctccttgg aacggacgag
    30721 gcacatcagc ggcagccaaa cgctcacgca gagccgcaaa taaaactaac accagcgaga
    30781 aaccggcagc ggctccaaaa ccataaagaa cagattccac caagttattg gctaaattca
    30841 cgtttaataa tgccacccct aatacggcac agttggtggt aatcagcggt aaatagatcc
    30901 caagcaagcg ataaagtgtc gggctggttt tatgcacaat catttccgtt aattgcacga
    30961 tcaccgcaat cactaaaata aacaccaagg tacgcaaaaa ttgagcgttt aacggctcaa
    31021 gcaaataggt ttccatcaaa taagcagaga gcgaggcaac cgtcagcaca aaggttgtcg
    31081 ccaaccccat accaatagca gtttccacct ttttcgacac tcccataaac ggacaaagcc
    31141 ctagaaattt aactaagaca aagttattaa taagggcggt gctgatgacc aacagaatat
    31201 aatcgaccat aaattccaca aaattaaata tacaagcggt caaaaacgca ttttattttg
    31261 caaaaaacag agaaaatctg accgtttgtt aaagcatctc attaaaaata aacgttatat
    31321 tatctcttgt tttcggctca ttcacaataa gaaatcggag gtacttctag taaacatacc
    31381 atatcaaata tgatcttgtt acctttgttt ctatctctgg tagaatggag aatgtgggga
    31441 ctaagctata cagcatgaaa ggtgaaagga gcttgatttt ctaagttaat cctaaaaagt
    31501 ctcactcctt
//
LOCUS       DANLZD010000006        31444 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.006, whole genome shotgun sequence.
ACCESSION   DANLZD010000006 DANLZD010000000
VERSION     DANLZD010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 31444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31444
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.006"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(196..378)
                     /locus_tag="PXE26_000185"
     CDS             complement(196..378)
                     /locus_tag="PXE26_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592811.1"
                     /translation="MYQFGYLRTKIGTDTQRAMLWNCPTYVLIIPFLLNTSVKKQYHA
                     FWQKYHQHNNDVSFPY"
     gene            528..1568
                     /gene="selD"
                     /locus_tag="PXE26_000186"
     CDS             528..1568
                     /gene="selD"
                     /locus_tag="PXE26_000186"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020909986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:573..575,aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HDL5592812.1"
                     /translation="MSEPIKLTQFSHGAGUGCKISPKVLGTILQTQLEQFVDPNLLVG
                     NETADDAAVYDLGNGQAIISTTDFFMPIVDAPFDFGRIAAANAISDIYAMGGKPIMAI
                     AILGFPVNKLPAEVAQQIVEGGRFACQQAGIALAGGHSIDSPDPIFGLAVTGIVPTER
                     VKRNASAVAGCELFLTKPLGIGILTTAEKKGLLKPEHQHLASEVMCQINLIGSAFSEL
                     PEVTAMTDVTGFGLLGHLSEVCQGSGLRAEVDFEDIQVLDGTKEYIALGAVPGGTNRN
                     FDSYGHLISAMTDEQKAILCDPQTSGGLLVAVLPQAVEKVQQIANRANVPLFHVGRLL
                     EMEQGKPRIEVI"
     gene            1568..2041
                     /locus_tag="PXE26_000187"
     CDS             1568..2041
                     /locus_tag="PXE26_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HDL5592813.1"
                     /translation="MFKPNVTMACVVHCKGKFLFVEEIEYGKRTLNQPAGHLEKDETL
                     LEGASRELFEETGIRAEMANLVKIYQWQAPRSQTDFLRFLFSVELEEWLEPNPQDADI
                     TQALWLTLAEFEDYIQQQGQCARSPLVVQSVKDYLSGERYPLSLLNAFEWARNGK"
     gene            2031..3239
                     /gene="ubiH"
                     /locus_tag="PXE26_000188"
                     /gene_synonym="visB"
     CDS             2031..3239
                     /gene="ubiH"
                     /locus_tag="PXE26_000188"
                     /gene_synonym="visB"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HDL5592814.1"
                     /translation="MENKTTTQFDVVIVGGAVTGSVLALALSSFTHHKISIAIVEKSL
                     PDYEQQGGFDARSIALAEGSLQKMGQIRPLAGSSLGEMISEIGTPIQQIQVADKGHFG
                     KTTLKASEQNVAQLGMVVELAKFGRKLTACLAQQANITLFCPNQVVGIERSQQHCGLS
                     LKNGEKLSCSLLVAADGIQSQIAKQCGVETVKVRDYAQSAIIANVELSESHQNQAFEY
                     FTPQGPFALLPLSGNMMSLVWCVKEPNELIQLSDSEFLARLQQQFGWKLGQFVRVSKR
                     FVYPLILQKAQSHIHHRLAVVGNAAQMLHPVAGQGFNLGLRDLTTLAELVALAFNQGK
                     DIGEFSLLSTFENERTQDQARMINATSGLISLFCCEMLPVQVVRNLGLLTVSHSKIAR
                     DFVANQALGW"
     gene            3502..4734
                     /locus_tag="PXE26_000189"
     CDS             3502..4734
                     /locus_tag="PXE26_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-xanthine permease"
                     /protein_id="HDL5592815.1"
                     /translation="MTTENMSTPKQAFIGLQMLFVAFGALVLVPLITGLDPNVALLTA
                     GVGTLIFQICTKRQVPVFLASSFAFIAPIQFGVQQWGIPVTMGALLCSGFIYMALSAL
                     VKAKGVNILHKYFPPIVIGPVIMVIGLGLAPVAVDMATGKSANIAYNTAIIVSMITLV
                     TTLIVAVFAKGLLKLVPILAGLTVGYILSVFMGLVDFTKVVEAPWFSLPKVSAPEFKL
                     DAILYLLPIALAPAVEHLGDVMAISQVAGKDFMKKPGLHRTLLGDGLATSAAAALGGP
                     PNTTYSEVTGAVMLTKNFNPKIMTWAACWAIAFSFCGKIGAFLATIPTFVMGGIMMLL
                     FGAVAVVGINTLIKAKVDLSIPRNLCIASVVMTFGIGGMLINIGEFSLKGISLCALVA
                     IVLNIVLPKEKVEDSAAH"
     gene            4801..5787
                     /locus_tag="PXE26_000190"
     CDS             4801..5787
                     /locus_tag="PXE26_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDL5592816.1"
                     /translation="MQKLTFSPPLLNTPCPWCSELESLRELYACEYTGAVTTRTSMPQ
                     PYPHDWAKNQYVLFDSNAQKTASVNTQDATSLQTASLNTIGLSPNNLDTTISFVRTIS
                     NELTAPSSKPFIISVFGSPEEVGECYEKIVAFQTEVKMPLAMEINISCPNIPGEISPA
                     YSAEELSHYLHALQTSLKKLAQGDNTLPIGIKIPPFTYQNQYDELIKGLLQAVENGEN
                     LPISFITSTNTLGSSLVLNAGKAVLNSEVGTGVGGMAGTAIHALSLGNVYTIRQMLDQ
                     EPKLKHLQIIGVGGVNDKAGFERMKSVGADFVGLATALGVKGIGVFKEILSE"
     gene            complement(5828..6238)
                     /locus_tag="PXE26_000191"
     CDS             complement(5828..6238)
                     /locus_tag="PXE26_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="HDL5592817.1"
                     /translation="MLYSVLTAHILLNEPYRNGAHSTQHEHLVVMFEIDEESGYFYAM
                     DLHQTEQPVVDSLFVFRVSDIEQNSLKEPRRLEICWSEDGYQAFLLINGYPHAVFDFR
                     QFVGYNHTKFPMPELGSMWVHKETTNELVEKWLG"
     gene            complement(6304..7614)
                     /gene="eno"
                     /locus_tag="PXE26_000192"
     CDS             complement(6304..7614)
                     /gene="eno"
                     /locus_tag="PXE26_000192"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HDL5592818.1"
                     /translation="MAKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTG
                     SREALELRDGDKGRFLGKGVLKAVSAVNNEIANALVGKDGSAQAEIDQIMIDLDGTEN
                     KSKFGANAILAVSLATAKAAAASKGLPLYAYIAELNGTPGVYSMPLPMMNIINGGEHA
                     DNNVDIQEFMIQPVGASTLKEALRIGAEVFHNLAKVLKAKGLNTAVGDEGGFAPNLAS
                     NADALACIKEAVEKAGYVLGKDVTLAMDCASSEFYDKERNVYDMKGEGKTFTSQEFTH
                     YLEGLCKEYPIVSIEDGQDESDWEGFAYQTKVLGDKVQLVGDDLFVTNTKILKNGIEK
                     GIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQ
                     IKTGSMSRSDRVAKYNQLIRIEEALERAGTPAPFNGRKEIKGQA"
     gene            complement(7805..8983)
                     /gene="rlmC"
                     /locus_tag="PXE26_000193"
     CDS             complement(7805..8983)
                     /gene="rlmC"
                     /locus_tag="PXE26_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(747)-C(5))-methyltransferase
                     RlmC"
                     /protein_id="HDL5592819.1"
                     /translation="MSSLLHCSHFERGDCTSCQWIEKPYSTQLAAKEADLKRLILPFI
                     LQNKTEILPLVGSPISQFRNKAKMVVSGSVERPILGILKDQNDAQSGVDLTDCLLYPS
                     SFHRLFPILKDFIARAGLVPYNISKKKGELKYILITESQYNQSFMLRFVVRSEAKRAL
                     VERELPELLEKLPPNSVVSLNIQPQHAALLEGETEIFLTEQKVLEEHFNGIPLFIRPQ
                     GFFQTNPVVASQLYHTAQSWIEHLPIAKLWDLFCGVGGFGLHCANALQAKNSNVELTG
                     IEISASAIASATKSAEKLGLKQVKFASLDSAQFALNEAGSPPDLVIVNPPRRGIGKLL
                     AEFLNQLGSPYLIYSSCNAVSMANDFTFLTNYELHKVQLFDMFAHTAHYETLTFLVKK
                     "
     gene            complement(8976..10013)
                     /gene="nagZ"
                     /locus_tag="PXE26_000194"
     CDS             complement(8976..10013)
                     /gene="nagZ"
                     /locus_tag="PXE26_000194"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HDL5592820.1"
                     /translation="MLLIDIKDKELTQEEVEMLEHPLVSGLILFTRNFYDKAQIQALV
                     KSIRQRVKKPLLITVDQEGGRVQRFREGFTKLPAMQSFNQLATTPEQAMQLAKETGWL
                     MAAEMFALDIDLSFAPVLDLGHECKAIGDRSFGQEPAAILPVAEAFIDGMREIGMATT
                     GKHFPGHGHVLADSHLETPFDDRPKERIFNHDILPFKQLIAKGKLSAIMPAHVVYTQC
                     DSQPASGSSYWLKEVLRKQLNFNGVIFSDDLGMKGAGFMGNFVERSEKAIQAGCDLLL
                     LCNEPEGLVQVLDGLKYQPTQAQKERRLSLMKRKTVTWRELENSSRYQQTQAELTALQ
                     NNWLEWKEANV"
     gene            complement(10139..10870)
                     /locus_tag="PXE26_000195"
     CDS             complement(10139..10870)
                     /locus_tag="PXE26_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HDL5592821.1"
                     /translation="MFDWITNPEAWVALFTLTGLEIVLGIDNIIVISILVSRLPIEQR
                     QSARIIGLGLAMGTRILLLLSLAWMMRLVEPLFTIGNNPISGRDLILLIGGLFLIVKS
                     AMELKESISAESHEEKSESIKKASFFMVLIQIAIFDIIFSLDSVITAVAMADDIPVMV
                     IAIIIAVAVMMLAAKTIGDFVDNNPTIKNLALAFLILIGIVLVGEGFDIHIPKAAVYT
                     AMGFSVVVEMLNIKMRRNQAKLEQA"
     gene            complement(10959..11639)
                     /gene="mutH"
                     /locus_tag="PXE26_000196"
     CDS             complement(10959..11639)
                     /gene="mutH"
                     /locus_tag="PXE26_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutH"
                     /protein_id="HDL5592822.1"
                     /translation="MQLSTFSPTEQALLSKAEWLAGFTLGEIAEMLHIPIPADLKRDK
                     GWVGTLIETALGAKAGSKAEQDFAHLGIELKTIPVNQKGLPLETTFVSLAPLTQNNGI
                     IWETSHVKHKLSRVLWIPVEGERKIPLAERHIGQPILWSPTITQESRLQQDWEELMEL
                     IVLGELHKINATLGEVLQLRPKGRNNRSITSAINAKGEIVQSLPLGFYLRKHFTAEIL
                     QNFLHCPL"
     gene            complement(11731..12366)
                     /gene="lexA"
                     /locus_tag="PXE26_000197"
     CDS             complement(11731..12366)
                     /gene="lexA"
                     /locus_tag="PXE26_000197"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="repressor LexA"
                     /protein_id="HDL5592823.1"
                     /translation="MRKHLTARQQEIFDFVKNHIETTGMPPTRVEIAREIGFKSPNAA
                     EEHLKALARKGYIEMLSGTSRGIRILVEDENQAANDEDEGLPLIGKVAAGTPILAVEH
                     VENHYPVNGAMFNPSADYLLKVNGNSMEKIGILDGDLLAVHKTNTARNGQVVVARVND
                     EVTVKRLEKKGELIYLHPENDELKPIVVNPAQEYIEIEGIAVGVIRSNAWM"
     gene            12533..14968
                     /gene="plsB"
                     /locus_tag="PXE26_000198"
     CDS             12533..14968
                     /gene="plsB"
                     /locus_tag="PXE26_000198"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsB"
                     /protein_id="HDL5592824.1"
                     /translation="MSGLLNFYRAFLNLPLSLLVKSRSIPTHPVAELELNLEQPIVYV
                     LPYTSQTDLLILQKNCLALNLPDPLQENVIEGQTLLRFVFLDEGRRFFKSKGAKSETE
                     SIFYRYLDLHRANAELDVQLVPVSVLWGRAPGKEDARHLQVLTSFQRFLSMVWFGRDN
                     FVRFSPAVSLRYMVTEYGADEKIAQKIARVAKMHFAKLRYSAMGPRLPNRDAMFNKIL
                     NSEVIQAAIAEEAKKSSPEKARKEAEKIINEIAADVKHESLRVADRVLSWLWNKLYQG
                     INVQNADRVRKLALEGHEIVYVPCHRSHMDYLLLSYLLYHQGLVPPHIAAGINLNFWP
                     AGPIFRSWGAFFIRRTFKGNRLYSTIFREYLAELFYRGYSVEYFIEGGRSRTGRLLEP
                     KTGMMSMSLQALQRGLNRSLSIVPVYIGYEHVLEVDTYAKELRGAAKEKENAGLVLRV
                     LKKLKNLGQGYVNFGEPILVNNYLNQYFPEWKEPSEDGRPKWLNEAVDNISHQVMVNI
                     NKAAAVNAKNLVGSALLASRQRALTREQLIEQLGSYIQLFRNVPYSKDMTLPTESAEV
                     MLNHVIHLPRSGVLIEKDNFGELVRLERESAVLMTYYRNNVQHLFVLPSLVASMVLHH
                     EAVSKDVVIKSVNRIYPFLQAELFLHFKQEELKAHIEAIIAELSRQGVIKNESDMLMI
                     NRSHIRTLQLHSAGVREILQRYYISLSVLLEQPNISRGYLEKESSSIAQRLSVLHGIN
                     APEFFDKAIFSTFTSSLKAQGYFDGDDNLAIAKVKETESLLRSLISIEVQQTIQGAMA
                     KVAESVENPNIAG"
     gene            complement(15073..15636)
                     /locus_tag="PXE26_000199"
     CDS             complement(15073..15636)
                     /locus_tag="PXE26_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HDL5592825.1"
                     /translation="MSAPNSGTNPAPLGLCGFALTTFLLSLINNGTFSGENVGLVLAM
                     GFAFGGTSQMIAGMFEFAKGNTFGFTAFTSYGAFWWSFALFKVFFAANVSAEFVGWYL
                     VAWGTFTLMMFIGTLAKARALQAIFLSLTITFYLLAAGDFTHNTTLTNIGGNFGLLTA
                     FLAFYLAAADIINESFGKTVLPIGEPK"
     gene            complement(15834..16730)
                     /locus_tag="PXE26_000200"
     CDS             complement(15834..16730)
                     /locus_tag="PXE26_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5592826.1"
                     /translation="MDILDRLLAFAQISAGISVKCQLQGDWQLENPHQTGQAIAHIIS
                     YGQAYLQHNGKTHHLKQGDIVFFPRFADHTLRSQIQPLTSKNAVNPEQLGAFTLTQAG
                     LSQSECDMFCLHFYYDHQAELMESLPEMIVFQVAETPLKAMLDILKQEAETPNLAVKS
                     VVNSLAVVILTMILREHLVNHNNQLFGILKGWQDLHLRPLIKAILLNPEHEWQVDDMA
                     AFIHLSRAQLVRLFNKHLCISPHAFVHKIRLQKAAMLLKSQAGSVLSIALSCGFQSES
                     HFITAFKKQYCVTPSQYRQLNP"
     gene            16866..17207
                     /locus_tag="PXE26_000201"
     CDS             16866..17207
                     /locus_tag="PXE26_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDL5592827.1"
                     /translation="MSSFQNWTEHTAHVKQSFGKLGQKHPKMLEAYKALGTAAAAEAL
                     DHKTRELIALAVAITTRCESCISVHAEEAAKAGATESEIAGALATAIALNAGAAYTYA
                     LRALEAVEEQK"
     gene            17218..17571
                     /locus_tag="PXE26_000202"
     CDS             17218..17571
                     /locus_tag="PXE26_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDL5592828.1"
                     /translation="MKKLAWILGFAAMMPMMSSAKQASVQQVQAEKAAGIWIDVRSAE
                     EFQQGHLNGAINVTHTEIAQRIAEVAPDKNQPIHLYCRSGHRAEAALNELKKLGYSNV
                     TNHGGYDDLIKAGLK"
     gene            17631..18269
                     /locus_tag="PXE26_000203"
     CDS             17631..18269
                     /locus_tag="PXE26_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgB family protein"
                     /protein_id="HDL5592829.1"
                     /translation="MSAFNNFVNFVANIVAPMQRQFINFVRIAICIVMVWIGGLKVCQ
                     YEADGIAHFVSNSPFFSYMYKKGPNLVDDGTGKMVMEYTLHKNPEGKMVAKNIEWHKE
                     NGTYTASYIIGATIVTVGLLTLSGIWFPVSGMAGGLLTFGMSIVTLSFMITTPEIWVP
                     NLGGDMPTPAHGFPYLSAVGRLIVKDVIMMAGGLVAAAECANRILARRKAIA"
     gene            18404..19585
                     /gene="purT"
                     /locus_tag="PXE26_000204"
     CDS             18404..19585
                     /gene="purT"
                     /locus_tag="PXE26_000204"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HDL5592830.1"
                     /translation="MTTIGTPLRTNATKVMMLGSGELGKEVVIELQRLGVEVIAVDRY
                     DNAPAQQVAHRAYTISMLDGNALRDLVEKEKPDFIVPEVEAIATATLVELEQEGYNVI
                     PTAKATQLTMNREGIRRLAAEELGLKTSPYRFVDNFEQFQQAIQEIGIPCVVKPIMSS
                     SGHGQSVIKSEADIQQAWDYSQQGGRAGGGRVIVEGFIKFDYEITQLTVRHIHGTSFL
                     APIGHIQVDGDYRESWQPQQMSDIALKKAQETAEKITSALGGRGIFGVELFVCGDEII
                     FNEVSPRPHDTGIVTMASQELSQFALHARAILGLPIPEIYRISPAASKAIVVEGKSDN
                     VRFGGVDKVLAEIGTNIRLFGKGEVNGHRRLGVILARDENTVRALEKARRAYDKLDIQ
                     L"
     gene            complement(19677..21170)
                     /locus_tag="PXE26_000205"
     CDS             complement(19677..21170)
                     /locus_tag="PXE26_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005556599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDL5592831.1"
                     /translation="MFKQLQQVGKAFMLPIAILPAAGLLLGIGGALSNKATVQAYPIL
                     DNPTLQGIFQIMASAGSVVFGNLALLLCIGLGIGLAKRDKGVAALAAVVGYLIMTGTI
                     SALIPLFPPETKGIDTGVIGSLVMGLITVKLHNKYHNIQLPQILGFFGGSRFVPIVTA
                     FAAIFVGAVFFLIWPAFQQWLVSAGQGIAEMGEIGTFFYGFLMRLSGAVGLHHMIYPL
                     FWYTELGGTEVVNGETIIGAQKIFFAQLADPTHQGLFTEGTRFFAGRFDTMMFGLPAA
                     CLAMYHAVPKARRGAISGLFLGAALTSFITGITEPIEFMFLFVAPWLYVFHAFLDGVS
                     FYIADLLNISIGNTFSGGVIDFTLFGILQGNENTNWLRVIIVGLPWAALYYFSFLFLI
                     KKFNVMTPGRAEESEEVVEQQTSSLTENAHKIIAALGSANNIENVDACITRLRVAVKE
                     VKAVDKATLKKLGAIDVLEVGGGVQAVFGAKAVLYKSEVNQILGKED"
     gene            21371..23218
                     /gene="ilvD"
                     /locus_tag="PXE26_000206"
     CDS             21371..23218
                     /gene="ilvD"
                     /locus_tag="PXE26_000206"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012055207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HDL5592832.1"
                     /translation="MPILRSATSTQGRNMAGARALWRATGMKENDFGKPIIAVVNSFT
                     QFVPGHVHLKDMGQLVAAEIEKAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRDLIAD
                     SVEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPTIFVSGGPMEAGKTKLSDQLI
                     RLDLVDAMIESADPNVSDERIDAIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGN
                     GSMLATHADRKELFLRAGREIVELCRKYYQQDDESVLPRSIATFDAFENAMSLDIAMG
                     GSSNTVLHLLATAQEAGVDFKMEDIDRLSRVVPCLSKIAPNTNKYHMEDVHRAGGIMG
                     LLGELDRAGLIHRHVKTVLGLTIEEQLNQYDIIRNKDEDLHKFFRAGPAGIRTTKAFS
                     QDCRWDTVDDDRVNGCIRNVENAVTKEGGLAVLFGNIAEDGCIVKTAGVDESIWKFTG
                     TAIVFESQEDAVAGILGGKVKEGHIVIIRYEGPKGGPGMQEMLYPTSYLKSMGLGKKC
                     ALLTDGRFSGGTSGLSIGHASPEAASGGAIALINDGDTVAIDIPNRSINLMVSDEELA
                     ARRAEMEARGDKAWQPLKREREVSFALKVFGHFATSADKGAVRDKSLLK"
     gene            complement(23352..23702)
                     /locus_tag="PXE26_000207"
     CDS             complement(23352..23702)
                     /locus_tag="PXE26_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TusE/DsrC/DsvC family sulfur relay protein"
                     /protein_id="HDL5592833.1"
                     /translation="MWHFYLMTIELNNIQYPTDASGYLTNLNDWSVELAEKIAEKEQI
                     SLTAEHWEIIYLVRDFYQEYKTSPAIRMLVKTMAQKFGEEKGNSRYLQRLFPDGPAKQ
                     ATKIAGLPKPAKCL"
     gene            complement(23731..24396)
                     /locus_tag="PXE26_000208"
     CDS             complement(23731..24396)
                     /locus_tag="PXE26_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BAX inhibitor protein"
                     /protein_id="HDL5592834.1"
                     /translation="MENRLAHSYSTGESLISTHKVLRNTYMLLAMTLTFSAVVAFVAI
                     QMNAPAMPWWGLLVGFYGLLFLTNATSNSSAGILSVFALTGFLGYTLGPILNRYIGAG
                     LGDIVALAFGATALVFFACSAYVLTTKKDMSFISGMMVALFVVLLVGIIANIFLAIPA
                     LSLALSSLFVIFSSGAILLATSNIIHGGETNYIRATVDLYVSIYNLFVSFLQIFGVLG
                     SDD"
     gene            24602..25150
                     /gene="pgsA"
                     /locus_tag="PXE26_000209"
     CDS             24602..25150
                     /gene="pgsA"
                     /locus_tag="PXE26_000209"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HDL5592835.1"
                     /translation="MKLNFPTYLTLFRVGLTPLFIVAFYLPTKYAPEISTLIFFIASI
                     TDAFDGYLARKWNQTTRLGAFLDPVADKVLVAVAFVCVAEYYHTWWITIPICIMIARE
                     IIISALREWMAELGERASVAVSIWGKVKTTAQMLALGGMLWRQNQLMEILAFILLYIA
                     VGLTIWSMMQYLNASKNSLLKS"
     gene            25228..27066
                     /gene="uvrC"
                     /locus_tag="PXE26_000210"
     CDS             25228..27066
                     /gene="uvrC"
                     /locus_tag="PXE26_000210"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HDL5592836.1"
                     /translation="MSEFNAKSFLLNVPHQPGVYRMYDSKGTIIYVGKAKDLKKRLAS
                     YFRSQLSSKKTEALVANLANIETTITHSETEALLLEHNYIKENQPKYNVLLRDDKSYP
                     YILLTKHKHPRLTAFRGSKKIAGEYFGPYPNVTAVRETLNLLQKIFPIRQCEDTYYKN
                     RSRPCLQYQIGRCLAPCVEGCYSPVEYDQQVNLVRLFLQGKDHQVVEHLVQKMEDAAE
                     ALDFEGAARFRDQIQSVRAVQEKQFVSNDRLDDLDIISIVYQNGIACVHILFVRQGKV
                     LGNRSYFPKVPSNTDLTELADTFVGQFYLQMNQHRTIPNQIVIDHQLSESKALSEILS
                     EQAGHKVSILDNAIRGDKQRYLALARTNAMAALVLQLKQESHIQSRYQALKEMLKMSE
                     IKRMECFDISHTMGNQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALLKR
                     YNRELPPEKIPDIIFIDGGKGQLNRALDVFAKLDVEWDKSKPLLIGVAKGVERKAGLE
                     TLIISKWDKEIHLPPDSLALHLIQHIRDESHQHAISGHRKKRQKAFTESGLESIAGVG
                     AKRRQALLKYLGGMQGVKSATLEEIQSVPGISKALAEVIFDTLKNS"
     gene            complement(27071..27346)
                     /locus_tag="PXE26_000211"
     CDS             complement(27071..27346)
                     /locus_tag="PXE26_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592837.1"
                     /translation="MKKLILLGLSVALTACSTPQQQSTVPMDMQAVQDYHQRVINKQT
                     VDKNTKQHDEPLNQSDKRSESINLPIHPIIYPSIGVGYHYGWKRYRY"
     gene            complement(27471..27824)
                     /gene="rplT"
                     /locus_tag="PXE26_000212"
     CDS             complement(27471..27824)
                     /gene="rplT"
                     /locus_tag="PXE26_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009635878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HDL5592838.1"
                     /translation="MARVKRGVIARARHKKVLKAAKGYYGARSRVYRVAFQAVVKAAQ
                     YAYRDRRQRKRQFRQLWIARINAAARQNGLSYSKFINGLKKASVEIDRKILADIAVFD
                     KVAFAALVEKAKSAL"
     gene            complement(27933..28130)
                     /gene="rpmI"
                     /locus_tag="PXE26_000213"
     CDS             complement(27933..28130)
                     /gene="rpmI"
                     /locus_tag="PXE26_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HDL5592839.1"
                     /translation="MPKIKTVRGAAKRFKKTASGGFKRKQSHLRHILTKKTTKRKRQL
                     RHKSMVAKADQVLVVACLPYA"
     gene            complement(28394..28936)
                     /gene="infC"
                     /locus_tag="PXE26_000214"
     CDS             complement(28394..28936)
                     /gene="infC"
                     /locus_tag="PXE26_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015871208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HDL5592840.1"
                     /translation="MKPVKRVQSNRAHRLNDEIRGVKEVRLTDENGEQVGIVSLQDAL
                     NRAEEAELDLVEISPNAEPPVCRIMNYGKFIYEKEKAAKEQKKKQKVVQVKEIKFRPG
                     TDDGDYQVKLRSIIRFLEDGDKVKITVRFRGREMAHQEIGMDVLERVKADTAEIAMVE
                     SAPGKLEGRQVVMVIAPKKK"
     gene            complement(29095..30894)
                     /gene="recQ"
                     /locus_tag="PXE26_000215"
     CDS             complement(29095..30894)
                     /gene="recQ"
                     /locus_tag="PXE26_000215"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HDL5592841.1"
                     /translation="MNTTAISVLNNIFGYQKFRDGQEEVINAVLENRDCLVIMTTGGG
                     KSLCYQVPALCLDGITLVISPLISLMKDQVDQLITNGIEAAYLNSTQTLEEQQLVEQK
                     ALSGQLKLLYLSPEKVMTQGFFHFISLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGL
                     RNTFPNVPLMALTATADLTTRSDILHHLRLNSPHIYLGSFDRPNIRYTVQEKFKPLEQ
                     LIKFISKQQGKSGIVYCNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQR
                     DDIQIVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDP
                     SDYAWLQKILLEEPESEQRNIKQHKLQAIGDFAESQTCRRLVLLNYFGEHRQEQCKNC
                     DICLDPPQQYDGLLDAQKVMSVIYRTGQIFGQHHIIAVLRGMNNLKIREHQHDQLSVY
                     GIGKEQSQHYWQNVVRQLIHLGLIIQNIANHSALQLTESARPFLRGEKQLQLALPRLG
                     ISATAFVQKQASHRYDKDLFARLRFLRKQIADLENIPPYIVFNDATLQEMAEFLPTSK
                     VEMLEINGVGERKFERFGQAFMSLIKEYQNNRK"
     gene            complement(31003..31308)
                     /gene="cyaY"
                     /locus_tag="PXE26_000216"
     CDS             complement(31003..31308)
                     /gene="cyaY"
                     /locus_tag="PXE26_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HDL5592842.1"
                     /translation="MNTAQFHQAVEQVWQQIEEKIYDEGLSVDTEIQGAVCTLTFDDE
                     SQVIINKQEAMLELWLASKLGGFHFKNVEGEWVTDEGRSFWQHLEEAFARHGESVSF"
BASE COUNT         8997 a         6140 c         6927 g         9380 t
ORIGIN      
        1 gactgtcaga tcaagtctga tcttctacaa ctaagccttc tcagaataaa taaattttca
       61 caagcggtgc aactttgcaa aaacttcggt attatgtagc agttgcacaa aaccccaaat
      121 tcattaaaac cgcttaaaaa tgaaatgccc taaactgatt tttcagtcta gggcatttat
      181 tatcacatat tatggttaat agggaaaact cacatcattg ttatgctggt gatatttttg
      241 ccaaaatgcg tgatattgtt ttttcaccga tgtgtttaat aaaaacggga ttatcaagac
      301 ataggtcggg caattccata gcattgcacg ttgtgtatcc gtgccgattt tggtgcgtaa
      361 gtaaccaaac tgatacatta gacccaatcc aaccgtcacc tattctaata gcataataac
      421 taaggtcgca tcattaaatt aaaagctcat tttttgcaaa aaatttccca aattccaccg
      481 cttgttggcg tacaataggc ataattttga tttacgatgg aggcagaatg tctgaaccga
      541 taaaacttac gcagttcagc cacggggcgg gttgaggctg taaaatttcg cctaaggtgt
      601 tagggacaat tttacaaact caattagaac aatttgtcga tccgaattta ttggtaggca
      661 atgaaacggc ggacgatgct gccgtctatg atttagggaa cgggcaggcc attatcagca
      721 ccaccgattt ctttatgccg attgtggacg ccccgtttga tttcgggcga attgctgctg
      781 ccaatgcgat tagcgatatt tatgcgatgg gtggcaagcc gattatggcg attgcgattc
      841 tgggctttcc ggtgaataaa ttgccggctg aagtggctca acaaattgtc gaaggtgggc
      901 gttttgcgtg ccagcaagcc ggtattgcct tggcgggcgg gcattcgatt gattcgcccg
      961 atccgatttt cggcttggct gttaccggca ttgtgccgac cgaacgggtg aaacgcaatg
     1021 cctctgcggt ggctgggtgt gagctgtttt taaccaagcc tttggggatt ggcattctaa
     1081 ccacggcaga gaaaaaaggt ttgttgaagc ctgaacatca acatctggca agcgaggtaa
     1141 tgtgccaaat caacttgatt ggttcagcgt tttccgaact gcctgaagtc acggcaatga
     1201 ctgatgtaac cggttttggc ttactcgggc atttaagcga ggtgtgtcaa ggctcgggct
     1261 tacgggcgga ggttgatttt gaggatattc aagtccttga tggcactaag gagtatattg
     1321 cattgggagc agttccgggt gggacaaatc gcaatttcga cagctatggg catttgattt
     1381 cggcaatgac ggacgagcaa aaagcgattt tgtgcgatcc gcaaacctct ggcggtttat
     1441 tagtggcggt gctgccacaa gcggtcgaaa aagtgcaaca aattgcaaat cgggcaaatg
     1501 tgccgttatt ccacgttggc agattgctgg aaatggaaca gggcaaacca cggattgagg
     1561 taatttgatg tttaaaccaa atgtaacaat ggcttgcgtg gtgcattgta agggaaagtt
     1621 tctgtttgtg gaagaaattg aatatggcaa acgtaccctt aaccagccgg cagggcattt
     1681 agaaaaagat gaaaccttgc tggagggggc aagccgtgag ctgtttgagg aaaccggtat
     1741 tcgggcagaa atggcaaatt tggtgaaaat ttatcaatgg caagcccctc gttcacaaac
     1801 cgatttcttg cgttttctgt tttcggtgga actggaagag tggctggagc cgaatccgca
     1861 agatgcggat attacccaag ccctttggct tactttagca gaatttgaag actacattca
     1921 gcaacaaggg caatgtgcca gaagcccgtt ggtggttcaa tcggtcaaag attatttaag
     1981 cggtgagcgt tatccattaa gtttgttgaa tgcgtttgaa tgggcgagaa atggaaaata
     2041 aaacaacaac ccaatttgat gtggtgattg tgggcggggc agtgaccggc tcggtgctgg
     2101 cattggcgtt aagtagtttt actcatcaca aaatctcgat tgcgatagtg gaaaaatcgc
     2161 tgccggacta tgaacagcaa ggcggttttg atgctcgcag tattgcctta gccgaaggca
     2221 gtttgcaaaa aatggggcaa atcagaccgc ttgcaggctc aagtttaggc gagatgatta
     2281 gcgaaatcgg cacgccgatt cagcaaattc aagtagcgga taaagggcat tttggtaaaa
     2341 cgaccttgaa agcaagcgag cagaatgtgg ctcaactggg tatggtggtg gaacttgcaa
     2401 aattcggcag aaaattgacc gcttgtcttg cacagcaagc taatattacg cttttttgcc
     2461 cgaatcaagt ggttggcatt gagcgttccc aacaacattg tggattgagc ttgaaaaatg
     2521 gtgagaaact aagctgttcc ttgctggtgg cggcagatgg tattcaatct cagattgcaa
     2581 aacagtgcgg tgtggaaacc gtaaaagtaa gggattatgc acaatcggca attatcgcca
     2641 atgtggaact gagtgaatct caccaaaatc aagcctttga atattttacg cctcaaggcc
     2701 cttttgcttt attgcctttg agcggaaata tgatgtcgtt ggtgtggtgt gtgaaagagc
     2761 cgaacgagtt aatccaactt tcagacagtg aatttttagc ccgtttgcaa caacaatttg
     2821 gttggaagtt agggcaattt gttcgagtga gcaagcggtt tgtttatccg ctcattttgc
     2881 aaaaagccca gtcgcatatt caccaccgct tagcagttgt cggcaatgcc gcacaaatgc
     2941 ttcacccggt tgctgggcaa ggtttcaact taggcttgcg tgatttgact accttagcgg
     3001 aattagtggc tttggcgttt aatcaaggga aagatatagg cgaattttcg ctcttatcaa
     3061 cttttgagaa tgagagaacg caagatcaag ccagaatgat aaatgctaca agcggtctga
     3121 tttcgctttt ttgttgcgaa atgttaccag ttcaggttgt gaggaattta gggttattaa
     3181 cggtttccca ttcaaaaata gccagagatt ttgttgctaa tcaggcatta ggttggtaaa
     3241 aaacacaaaa gcagcaattt tctatttgac actgttttta aaaaggcgta ttatccaacc
     3301 cgtttaaaaa tctcaccaaa gccttgaatg caaattcaag gctttttcct ttttagtgaa
     3361 agcctatgaa ttttgtttgc cgtaaaatcg gcaaaaaaat tttgcctaaa attcgcaatc
     3421 gtttgcgaaa taggtttata gcgttgtttt catctgggta actgcaatgg ttacatcgca
     3481 atacatcaaa gagagtaaaa aatgaccaca gaaaatatga gtacgccaaa gcaggcgttt
     3541 atcgggctgc aaatgctgtt tgttgcattt ggggcgttag tattagttcc gctgattacc
     3601 ggtttagatc ctaatgttgc ccttcttacc gccggtgtcg gtacgttaat cttccaaatt
     3661 tgtactaaac gtcaagttcc tgttttcctc gcatcgagtt tcgcttttat cgctccaatc
     3721 caattcggtg ttcaacaatg gggaattccc gtcacaatgg gagcattgct ctgttccggt
     3781 tttatttata tggcattatc tgctttagtg aaagcgaaag gggtgaatat tctgcataaa
     3841 tacttccctc caatcgtgat tggaccggta attatggtga ttggtttagg tcttgctcct
     3901 gttgcggtgg atatggcaac gggtaaatcg gcgaatattg cctataacac cgctattatt
     3961 gtttcaatga taacgctggt aactacgctg attgtggcgg tgtttgcgaa agggctatta
     4021 aagctcgtgc caatattagc aggtttaacg gtgggatata tcttgtctgt ttttatggga
     4081 ttggtggatt ttactaaagt ggttgaagct ccttggttta gtctaccgaa agtttccgca
     4141 ccggaattca aattagatgc aatcttgtat ttattaccta tcgcacttgc tccggcagtc
     4201 gaacacttag gcgatgtaat ggcaatcagc caagttgccg gtaaagattt tatgaaaaaa
     4261 ccggggttac accgcacgct tttaggtgat ggtttagcaa cttcagcagc tgcggcatta
     4321 ggtggcccac caaatacgac ttactctgaa gtaaccggtg cggtaatgct aaccaaaaac
     4381 ttcaatccga aaattatgac ttgggctgcg tgctgggcta tcgctttctc attctgcgga
     4441 aaaatcgggg cattccttgc cactatccct acttttgtga tgggcggtat tatgatgttg
     4501 ctgttcggtg cagttgcggt tgtggggatc aatactctaa ttaaagctaa agttgattta
     4561 agcattccac gtaatctttg tattgcttct gtagtaatga cattcggtat tggcggtatg
     4621 ttaattaaca tcggcgaatt ctcattaaaa gggatcagct tgtgtgcatt agtcgctatt
     4681 gtacttaaca ttgtattacc aaaagaaaaa gtagaagatt ctgctgctca ttaatcaaag
     4741 gacgctgtgg cgtccttttt gctaataacc ctctatttgt aaataaaaag gaataacact
     4801 atgcaaaaac tcacattttc accaccactt ttaaatacgc cttgcccttg gtgttcggag
     4861 ttagagagct tgcgtgaact ttatgcgtgt gaatataccg gtgcggtaac aacccgtact
     4921 tcaatgcctc aaccatatcc acacgattgg gcgaagaacc aatatgtact ctttgattcc
     4981 aacgcacaga aaacagcaag tgtgaatact caagatgcaa ctagcttaca aacagcaagc
     5041 cttaacacca tcggtttaag cccaaataat ctggatacca ccatcagctt tgtacgcacc
     5101 atttcaaatg agctgacagc gccatcaagc aaaccattta ttatttcggt gtttggttca
     5161 cccgaagagg tgggggaatg ttatgaaaaa attgttgctt tccaaactga agtgaaaatg
     5221 cctttggcaa tggagattaa tatctcttgc ccgaatattc cgggtgaaat ttcgcctgct
     5281 tattccgcag aagaattatc acattacttg cacgcactac aaacttcgct aaaaaaactg
     5341 gctcaaggtg ataatacttt accaatcggg attaaaattc caccttttac ttaccaaaat
     5401 caatatgatg aattaatcaa aggcttatta caagcggtcg aaaatggcga aaatttacca
     5461 atttccttta ttacttcaac caatacgctt ggctcatcgc ttgtcttaaa tgctggcaaa
     5521 gcggtattaa attcagaagt gggaacgggc gtaggcggaa tggcaggaac ggcaatccat
     5581 gcactttctt tggggaatgt ttacacgatt cgccaaatgt tagatcaaga gcctaagctc
     5641 aaacatcttc aaattattgg tgtgggcggc gtgaatgata aagccggctt tgagcgaatg
     5701 aaatcggttg gggcagactt tgtggggtta gctaccgcat taggggtgaa aggaatcggc
     5761 gtttttaaag agattctgtc tgaataatga agaggagggc gtgcattgca cgcccgaata
     5821 aatgaaatta gcctaaccat ttctccacta attcattagt ggtttcttta tgtacccaca
     5881 tactgccaag ttccggcatt gggaatttgg tgtggttgta gccgacaaat tggcggaaat
     5941 caaacacggc gtgcgggtag ccgttgatca gtaaaaaggc ttgatagccg tcttcactcc
     6001 agcaaatttc taaacggcga ggttctttta atgaattttg ctcaatatcg ctgacccgaa
     6061 acacaaataa actatccact accggctgtt cggtttggtg taagtccatt gcataaaagt
     6121 agccgctttc ttcatcaatt tcaaacatca ctactaaatg ttcgtgctgg gttgaatgag
     6181 cgccattacg gtaaggttcg ttcagtagaa tatgagcagt taaaacagag tagagcatta
     6241 aattatcctt ataagtaaaa tgccaccgat ttctcagtgg catttaaata tttaatcagg
     6301 caattacgct tgacctttaa tctctttacg gccgttgaac ggagccggtg taccagcacg
     6361 ctctaacgct tcttcgatac ggattaactg gttgtatttc gctacacggt ctgaacggct
     6421 cattgaaccg gttttgattt gacctgctgc tgtacctact gctaaatctg caatggttgc
     6481 atcttcagtt tcgcctgaac ggtgagagat aactgcggtg taacctgcat ctttcgccat
     6541 tttgattgca gctaaagttt cagttaaaga accgatttgg ttgaatttga ttaagattga
     6601 gtttgcgata cctttctcaa taccgttttt caagattttg gtattggtta cgaataagtc
     6661 atcaccaact aattgtactt tgtcgcctaa tactttagtt tggtatgcga aaccttccca
     6721 gtcagattcg tcttgaccat cttcgataga cacgattggg tactctttgc ataagccttc
     6781 taagtagtga gtgaactctt gtgaagtaaa ggttttgcct tcgcctttca tatcgtacac
     6841 attgcgttct ttgtcgtaga attcagatga tgcacagtcc atcgctaaag ttacgtcttt
     6901 acctaacaca tagcctgctt tttctaccgc ttctttaatg cacgctaatg cgtctgcgtt
     6961 tgaagccaag tttggtgcga aaccaccttc gtcacctaca gcagtattta agcctttcgc
     7021 ttttaatact tttgcaagat tgtggaatac ttcagcaccg atacgaagag cttcttttaa
     7081 tgtagaagca cctaccggtt gaatcataaa ttcttgaatg tccacgttgt tgtcagcgtg
     7141 ttcaccacca ttgatgatgt tcatcattgg taatggcatt gagtaaacac ccggtgtgcc
     7201 gtttaattca gcaatgtatg cgtaaagcgg taagcctttt gaagcggctg ctgcttttgc
     7261 tgttgctaaa gaaaccgcta agatagcgtt tgcaccgaat tttgatttgt tttctgtgcc
     7321 atctaaatcg atcataattt ggtcgatttc agcttgtgca gaaccgtctt tgcctactaa
     7381 tgcgtttgca atttcgttat ttacggcaga aaccgctttt aatacacctt tacctaagaa
     7441 acgacctttg tcgccatcac gtaattctaa tgcttcacgt gaaccggtag aagcacctga
     7501 tggagcggct gctaagccta caaaaccacc ttctaagtga acttctgctt ctacagttgg
     7561 gttaccacga gagtcgatga tttcacgacc gattacttta acaattttag ccattgttga
     7621 tgtcctctaa tatacgagtt aatagaaaaa agaataggta tatagtaaag cgattttctg
     7681 cttttgtctt ggaaaaactg attgagtggc agaaaatttg ccactaattt gatctaagac
     7741 tatattcgcc tgagattata gcaacctttg caaaaaacgg caaaaatttg cccgcttgta
     7801 atgcttattt tttgactaaa aaagtcaagg tttcataatg tgctgtgtga gcaaacatat
     7861 caaacagctg cactttgtgt agttcgtaat ttgtcaaaaa tgtaaaatcg ttcgccattg
     7921 agacggcatt acaactggag taaatcaaat aaggtgagcc taattgattt aaaaattctg
     7981 ctaatagttt gccgatacca cgtcgaggtg ggttcacaat cactaaatcg ggtggagaac
     8041 cagcttcatt taaagcaaat tgtgcagaat ctaatgaggc aaattttacc tgctttaggc
     8101 cgagtttttc agccgatttg gtcgcacttg caatagctga ggctgaaatc tcaatgcctg
     8161 tcagctccac gttcgagttc ttcgcttgca aggcgttggc acaatgtaag ccgaaaccac
     8221 cgacaccgca gaacaagtcc cacaatttag caataggtaa atgctcaatc cagctttgtg
     8281 ctgtgtggta aagctggctt gctaccacag ggttagtttg gaaaaagccc tgagggcgaa
     8341 taaatagcgg tatgccgtta aaatgttctt ccagcacttt ttgttcggtg aggaaaatct
     8401 cagtttcgcc ttctaaaaga gcagcgtgtt ggggctgaat attcagacta actactgagt
     8461 tgggtggcag tttttccaac agttcgggca attcccgttc aaccaatgca cgctttgctt
     8521 cactacgaac cacaaaacgg agcataaatg attgattata ttggctttcg gtaatcagaa
     8581 tatattttag ctcacctttt ttcttactga tgttatacgg cactaaacca gctcgagcga
     8641 taaaatcttt caaaatcgga aaaagtctat gaaatgagga cgggtagagc agacagtcgg
     8701 ttaaatccac cccgctttga gcatcatttt gatcttttaa aatgcctaaa atcgggcgtt
     8761 ctacactgcc ggagaccacc attttcgctt tgttacgaaa ttgcgaaatt ggcgagccga
     8821 caagcggtaa gatttccgtt ttattttgca aaataaacgg caaaatcaac cgcttgagat
     8881 cggcctcttt ggcggctaat tgcgtgctgt atggcttttc aatccactgg cacgaagtac
     8941 agtcgccacg ctcaaaatgc gaacaatgca acaagctaga cattcgcttc cttccattcc
     9001 agccagttgt tttgtaaggc cgttaattca gcctgagttt gttggtagcg agagctgttt
     9061 tccagctctc gccaagtcac ggttttgcgt ttcattaaag aaaggcgacg ttctttttgt
     9121 gcttgagtcg gctgatattt cagcccgtct aacacttgca ccaggccttc aggctcgtta
     9181 caaaggagca ataaatcaca gccggcttgg attgcttttt cagaacgctc gacaaaattg
     9241 cccataaagc ccgcaccttt cattcccaaa tcgtcagaga atatcacacc gttaaagttc
     9301 agctgtttac gcaatacctc tttaagccaa tagcttgaac cgcttgccgg ctggctatca
     9361 cattgggtgt aaacgacgtg ggcaggcata atggcagaga gttttccttt ggcaataagc
     9421 tgtttgaacg gcagaatatc gtgattaaaa atccgctctt tcgggcgatc atcaaacggg
     9481 gtttctaaat gcgaatcggc taaaacgtgt ccatgaccgg ggaagtgttt gccggtggtc
     9541 gccataccga tttcacgcat tccgtcaata aaggcttcgg caacaggcaa aatcgctgct
     9601 ggctcttgcc cgaatgagcg atcgccaatc gctttgcatt cgtgtcctaa atccagtacc
     9661 ggagcgaaac tgaggtctat atcgagggca aacatttctg ctgccatcaa ccagccggtt
     9721 tctttcgcta attgcattgc ttgctctggc gttgtggcaa gttggttaaa agattgcatt
     9781 gccggcagtt tagtaaagcc ttcacgaaag cgttgcaccc gaccgccttc ttggtcgaca
     9841 gtaataagca acggtttttt cacccgctgg cgaatggatt tcactaatgc ctgaatttgt
     9901 gctttgtcgt agaaattacg ggtgaataaa attagcccgg aaactaaagg gtgttccagc
     9961 atttcgactt cttcttgagt cagttcttta tctttaatat caatcagtaa cataattttc
    10021 gttgagctat ttgcaaaaaa atgagcagat atgaccgctt gttgtgccta ttctacatta
    10081 aaaagccctt gatgttgatc aagggcgaat gattaagggc ataaatgaga cagagcaatt
    10141 atgcttgttc taatttagct tggttacgac gcatttttat gttgagcatt tcaaccacaa
    10201 ccgagaagcc cattgccgta taaaccgctg cttttggaat atgaatatca aaaccttcgc
    10261 cgactagtac aataccgatt aaaatcaaga acgctaaagc gagattttta atggttgggt
    10321 tgttatctac aaagtcccca atggttttcg ctgctaacat cattaccgca actgcaatga
    10381 taatcgcaat aaccattacc ggaatatcat ctgccattgc cacagcagta atgactgaat
    10441 caagggagaa aataatatca aaaattgcaa tttgaattaa caccataaaa aagctggctt
    10501 ttttaatgga ttcgcttttt tcttcgtgag attcggcaga aatggattct ttcagctcca
    10561 ttgcactttt aacaatcagg aataatccac cgatgagtag aatgagatct ctacctgaaa
    10621 ttggattgtt gccaatagtg aaaagaggct cgaccaaacg catcatccaa gcaagcgaga
    10681 gaagcaataa aatacgggtt cccattgcca gccccaagcc gataattcgg gcagattggc
    10741 gttgttcaat aggtaaacgg gaaacgagaa tactgatgac gatgatgtta tcaatgccta
    10801 atacgatttc aagcccggta agtgtaaaga gcgcaaccca agcttcagga tttgtgatcc
    10861 agtcaaacat aaaaatgtcc ttttaaaaat aagggattaa gtgatatttt ctatcaaata
    10921 gaattaaagc cgacatctta tagagtgtga ggacaaattt aaagggggca atgcaaaaag
    10981 ttttgtaaaa tttcggcggt aaaatgttta cgcaaataga aaccaagagg gagagattga
    11041 acaatctccc ctttagcgtt gatagcagag gtgatagagc ggttatttct acctttgggt
    11101 ctgagttgta acacttcgcc taaggttgca ttaattttat gcagttcacc taacacaatc
    11161 aactccatta attcctccca atcttgctgt aggcgggatt cttgtgtgat agtcggagac
    11221 cataaaatcg gctgaccgat atggcgttcg gcaaggggta tctttcgttc cccttcaacc
    11281 ggaatccaaa gcacacggga aagcttatgt ttaacgtggg aggtttccca aataataccg
    11341 ttgttttggg ttaaaggagc aaggctgacg aatgtggttt ccagcggtaa tcctttctga
    11401 ttgaccggaa tggttttcag ctcaatgcct aaatgtgcaa aatcctgttc ggctttactg
    11461 ccggctttcg cacctaaagc ggtttcaatc agagtaccga cccagccttt atctcgtttc
    11521 agatctgctg gtatcggaat atgaagcatc tcggcaattt cacctaaagt gaaccctgcc
    11581 agccattccg ctttgcttaa taatgcctgc tcggttggag agaatgtaga taattgcatt
    11641 gcacttagtt aattagacta aactggcaag cggtcaaatt taggcagaaa tttgcaaaaa
    11701 attactaaaa aataaccgct tgtgaggaaa ttacatccaa gcattactgc gaataacgcc
    11761 tactgcaatg ccttcaattt caatatattc ttgagcaggg tttactacaa tcggttttaa
    11821 ttcatcgttt tcagggtgta agtaaattaa ttcacctttc ttctctaagc gtttaacagt
    11881 cacttcatca tttacccgag caaccaccac ttgcccgtta cgagcggtat tggttttatg
    11941 aacggctaat aggtcaccgt ctaaaatacc gattttttcc attgaattgc catttacttt
    12001 gagtaaataa tcagcacttg gattaaacat cgcaccattc accgggtaat ggttttcaac
    12061 gtgttcaacc gctaaaatag gtgtgccagc agctactttg ccaatcaacg gtaagccttc
    12121 atcttcatcg ttggcagctt ggttttcgtc ttcgactaaa atgcgaattc cacgagatgt
    12181 acctgataac atttcaatat agcctttacg agcaagggct tttaagtgtt cttctgccgc
    12241 attaggtgat ttaaagccga tttcacgggc tatttctact cgggttggtg gcataccggt
    12301 ggtttcaata tggtttttga cgaaatcaaa aatttcttgc tgacgggcag ttagatgttt
    12361 acgcatttta agttaatcct cactgtcttt atatacagaa aatattgata gtatatacag
    12421 tatttttgat tttgtaacta ataatttcac gaaattccat aaaaatttat ggtagaatgg
    12481 aagaaattag aggttagacc tccaacaata acgattctaa aaggatattt atatgtctgg
    12541 cttattaaat ttttatcgag ctttcctaaa cttaccactt tcacttttag taaaatctcg
    12601 ctctattccg actcatccgg tggctgaact ggaactaaat cttgaacagc cgattgtcta
    12661 tgttctacct tatacctcgc aaaccgattt attaatttta caaaaaaact gcttggcttt
    12721 gaatttgccc gatccgttgc aagaaaatgt gattgaaggg caaacattgc ttcgttttgt
    12781 atttttagat gaaggtcgcc gtttttttaa atctaaaggg gcgaaaagtg agacagagtc
    12841 gattttttat cgttatttag atttacatcg tgctaatgct gaattagacg tccaattagt
    12901 gccggtttcg gtattatggg ggcgggctcc gggcaaagaa gatgcccgcc atttacaggt
    12961 gcttacctca ttccaacgtt ttttatccat ggtttggttt gggcgtgata attttgtacg
    13021 tttctcccct gcagtatcgt tacgctatat ggtaactgaa tatggtgcag atgaaaaaat
    13081 cgctcaaaaa atcgcgcgtg tggcgaaaat gcactttgca aaattgcgtt attcagcaat
    13141 ggggcctcgt ttaccaaatc gtgatgcgat gtttaataaa atcctgaatt cagaggtgat
    13201 tcaagctgcg attgcggaag aagcgaagaa atcatcgcct gaaaaggctc gcaaagaagc
    13261 cgagaaaatc attaatgaaa ttgccgctga tgtaaaacac gagagtttgc gtgtagcaga
    13321 tcgagttctg agctggcttt ggaataagct ttatcaaggg atcaacgtgc aaaatgcaga
    13381 ccgtgtgcgt aaattggcat tagaaggtca cgagatcgtt tatgtgcctt gccaccgtag
    13441 ccatatggac tatttgctcc tatcttatct actttaccat caaggattag taccgccaca
    13501 tattgccgct gggatcaatt taaatttctg gccggcaggc ccgattttcc gtagttgggg
    13561 agcatttttc attcgccgta cctttaaagg aaatcgcctc tattccacca ttttccgtga
    13621 atatttagcg gaattattct atcgtggtta ttcggtcgaa tattttattg aaggcgggcg
    13681 ttcacgcaca ggtcgtttat tagagcctaa aaccggtatg atgtcgatga gcctacaagc
    13741 cttacagcga gggctgaata gatctttaag tattgtgcct gtttatatcg gttatgaaca
    13801 cgtcttagaa gtcgatactt acgctaaaga gttgagaggt gcggcaaaag agaaagaaaa
    13861 tgcgggcttg gtgctacgag tgctgaaaaa actgaaaaat ttaggtcaag gatatgtgaa
    13921 tttcggtgag ccaattttgg tgaataatta cttaaatcaa tatttccctg agtggaaaga
    13981 gccttccgaa gatggacgac ctaagtggtt aaatgaagcc gtggataata tttcacatca
    14041 agtaatggtg aatatcaata aagcggcagc agttaatgcg aaaaacttag tggggtcagc
    14101 attattggca tctcgccagc gtgcattaac ccgtgaacaa ctcattgaac aacttggaag
    14161 ttatattcag ttatttcgta atgtacctta ttctaaagat atgacattac caactgaaag
    14221 tgcagaagtg atgttgaatc atgttattca tttacctcgt tcgggcgttt taattgaaaa
    14281 agataatttt ggtgaactgg ttcgtttaga acgagaatct gctgtgttaa tgacatatta
    14341 cagaaataat gtgcagcatt tatttgtgtt gccttcactt gttgcaagta tggtacttca
    14401 tcatgaggct gtttcgaaag atgttgtgat taagtcggtt aatcgtattt atccattctt
    14461 gcaagcagag ttattcttac actttaagca agaagaatta aaagcacata ttgaagcaat
    14521 tattgcggaa ctaagtcggc agggggtgat taaaaacgaa agtgatatgt taatgatcaa
    14581 tcgctcacat attcgtacct tgcaattaca ttcagctggt gtgcgtgaaa tccttcaacg
    14641 ttattatatt agcctaagtg tcttgttgga gcagccaaat attagtcgtg gctatttaga
    14701 aaaagagagt agttcaattg ctcagcgttt atcagtcttg catggtatta atgcgccgga
    14761 gttttttgat aaggcgattt tctctacctt tacatcaagt ctaaaagcac aagggtattt
    14821 tgatggtgat gataatttag cgattgcaaa agttaaagaa acggaatcgt tgttacgtag
    14881 tttgatttcg attgaagttc aacagaccat tcaaggtgcg atggctaaag tcgcagaatc
    14941 tgtagagaat cctaatatcg caggataata aatcaaagaa gggcgctaac aagcgctcgt
    15001 ttcttgcaat tttgttgcca aaaataaaag ctgaatgcgc gaccacattc agctttttta
    15061 cttcctatat aattattttg gttcaccgat tggtaaaaca gtcttaccaa aactttcatt
    15121 aataatatcc gcagcggcta agtagaacgc taagaatgcg gttaataaac cgaagttacc
    15181 accaatgtta gttagggtgg tgttatgggt aaaatcacct gcggctaaaa ggtagaaagt
    15241 aatggttaaa cttaagaaaa tagcttgtaa tgcacgggct tttgctagtg tgccgatgaa
    15301 catcataagt gtgaatgttc cccaagctac taagtaccaa ccaacgaatt ctgccgatac
    15361 attcgcagca aagaacactt taaataatgc aaaagaccac cagaatgcac catagctggt
    15421 aaacgcagta aagccgaacg tgttaccttt agcaaattca aacatacctg caatcatttg
    15481 tgatgtgcca ccgaaagcaa atcccattgc taaaactaaa cctacgtttt caccgctgaa
    15541 tgtaccgtta ttgattaggc ttagtaaaaa tgtagtaagt gcaaaaccgc ataaaccgag
    15601 cggagccggg ttagttcctg aatttggagc tgacattgaa aacctctgtt atattgttac
    15661 accataagtg tggtaattgt ttatttacgc cgataaatca gacgttatgt gcctaaaatt
    15721 tagggcgata aagtatagcg attttgcagt aaattgacta gaaatttccg agacaagcgg
    15781 tgagattttt gcaaaatttt gccaaaaaat gaccgcttgt tgttgtcatt tagctatgga
    15841 tttaactgcc gatattggct gggtgttacg caatattgct ttttaaaggc ggtaataaaa
    15901 tgcgactcgg attggaagcc gcaagataag gcgatactta ataccgaccc agcttggctt
    15961 ttgagcagca ttgctgcttt ttgtagccta attttgtgta caaaagcatg tgggctaata
    16021 cataaatgtt tgttaaataa gcggactaac tgggcacgag aaaggtggat aaatgccgcc
    16081 atatcatcga cttgccattc gtgttcggga ttaagcaaaa tagctttgat caaaggtctt
    16141 aagtgtaagt cttgccaacc ttttaaaata ccgaataact gattgttatg gttaactaga
    16201 tgttctcgta agatcatagt taaaataaca acagcaagcg agttaaccac agattttacg
    16261 gctaaattag gtgtttctgc ttcttgtttt agaatatcta acattgcttt taatggtgtc
    16321 tcggcaactt gaaatacgat catttcaggt aagctttcca ttaattcggc ttgatggtca
    16381 taataaaaat ggaggcagaa catatcgcat tctgattgag aaagtcctgc ttgggtgagt
    16441 gtaaatgcac ccaattgttc agggtttacc gcatttttgc tggtcaaagg ctgtatttga
    16501 ctacgtaatg tatgatcggc aaatctgggg aaaaatacaa tatctccctg tttaaggtga
    16561 tgggttttcc cattatgttg tagataagct tgcccatagc tgatgatatg agcgattgct
    16621 tgtccggttt gatgcggatt ctcaagttgc caatctccct gtaactgaca tttcacactg
    16681 attccggctg agatttgagc gaaagctaga agcctatcta atatatccat tgttcattcc
    16741 ttatatttcc accttaaatt gcgattattt cattataata tgagctgatt tgataataaa
    16801 gtttatcaga taaacgcaat aataaatgcg ttttttcata ttattcactt taggaggaaa
    16861 tcaatatgtc ttcattccaa aattggacag aacacacagc tcacgttaag caatcttttg
    16921 gtaaattagg gcaaaaacac cctaaaatgc ttgaagctta taaagcatta ggtacagcgg
    16981 ccgcagcgga agcattagat cacaaaactc gtgaattaat tgcattagca gtagcgatta
    17041 caacacgttg tgaaagttgc atcagtgtac acgcagaaga agcggcaaaa gcaggtgcaa
    17101 ccgaaagcga aattgccggt gcattagcga ctgcgattgc attaaatgcc ggtgcggcat
    17161 atacctatgc tttacgtgca ttagaagcgg tggaagagca aaaataagga gcaataaatg
    17221 aagaaattgg cttggatttt aggctttgca gctatgatgc caatgatgtc tagtgctaaa
    17281 caagcatcag ttcagcaagt gcaggctgaa aaagcagcgg gcatttggat tgatgtacgt
    17341 tctgctgaag aatttcagca agggcattta aatggtgcaa ttaatgtaac gcatactgaa
    17401 attgcacaac gtatcgcaga agttgctcca gataaaaatc agccgattca tctttattgc
    17461 cgctcgggtc atcgagctga agcggcgctt aatgagctaa aaaaattagg ttacagcaat
    17521 gtaactaatc atggtggtta tgacgatctg attaaagccg ggttgaaata actgttttga
    17581 gtgccaagca tttgcttggc acttttcgtt tatatctgag gttaaaaatt atgagtgctt
    17641 ttaacaattt tgttaatttt gttgcaaata ttgttgctcc aatgcaacgc caattcatta
    17701 actttgtacg tattgccatt tgtatcgtga tggtttggat tggtggttta aaagtctgcc
    17761 aatatgaagc agacggtatt gcccattttg tgtctaatag cccgttcttt agttatatgt
    17821 acaaaaaagg cccgaattta gttgatgacg gcacaggtaa aatggtgatg gaatataccc
    17881 ttcacaaaaa ccctgaaggt aaaatggtgg caaaaaacat cgaatggcat aaagaaaacg
    17941 gcacttatac tgcatcttat atcatcggtg caaccattgt gacggttggt ttattgacgt
    18001 tatccggtat ttggttcccg gtttccggta tggcgggggg cttactcacc tttggtatgt
    18061 cgattgttac actctctttt atgatcacca cccctgaaat ttgggtgccg aatttaggtg
    18121 gggatatgcc aaccccagcg catggtttcc catatctgtc agcagtcggt cgtttaattg
    18181 tgaaagatgt gattatgatg gcaggcggct tggttgccgc agcggaatgt gcaaatcgca
    18241 ttttagccag acgtaaagcg attgcttaat tgatagtggt aatgcaagcg gtcattttct
    18301 tgtaaaattt tgcaataaaa tgaccgcttg ttttttgtca atttgccata atttcaagta
    18361 taattcaatt acgtaatcgt ttgcttttat ggagaggaat aaaatgacaa caatcggtac
    18421 accgttaaga acgaacgcta caaaagtgat gatgttaggt tcgggcgagt tggggaaaga
    18481 agtggtaata gagctgcaac gcttaggcgt agaagtgatt gcggtggatc gttatgacaa
    18541 tgcacctgca cagcaagtgg ctcaccgtgc ttatacgatt tcgatgttag acgggaatgc
    18601 attgcgagat ttggtggaga aagaaaaacc ggattttatt gtgcccgaag tagaagccat
    18661 cgcaactgca accttggttg agttagagca agagggatat aacgtaatcc caacggcaaa
    18721 agcaacgcaa ttaacaatga atcgagaagg cattcgccga ttggcggcag aagagttggg
    18781 cttaaaaacg tcgccttatc gttttgtgga taattttgaa cagttccagc aagcgattca
    18841 agaaatcggc attccgtgtg tggtcaaacc gattatgtct tcttccggac acgggcaatc
    18901 agtaattaaa tctgaagcgg atattcaaca ggcttgggat tattcgcaac agggcggacg
    18961 tgccggcggt gggcgtgtga ttgtagaggg ttttatcaaa ttcgattatg aaattaccca
    19021 gcttaccgtt cgccatattc acggcacgtc gtttttagct cccatcgggc atattcaggt
    19081 tgatggcgat tatcgtgaat cttggcaacc gcagcaaatg tcggacattg cattgaaaaa
    19141 agctcaagaa accgcagaaa aaattacctc tgcactgggc ggaagaggga ttttcggcgt
    19201 ggaacttttt gtctgtggcg atgagattat ttttaacgaa gtctccccac gtccacacga
    19261 taccggaata gtaacaatgg catcacaaga gctttctcaa tttgctctgc acgcccgtgc
    19321 gattttgggc ttaccgattc cggaaattta ccgcatcagc ccggcagctt ctaaagcgat
    19381 tgtggttgaa gggaaatcgg ataatgtgcg ttttggcggt gtagataagg tattagccga
    19441 aatcgggacg aatatccgct tattcggtaa aggcgaagta aacggacacc gccgattagg
    19501 ggtaattctt gctcgtgatg aaaatacagt gagagcatta gaaaaagctc ggcgagctta
    19561 tgataagtta gatattcaat tataaagtca ggattttgat attcgttgat agtaggcatt
    19621 ttatgcctac tatcctatag gcctctaatc aaattggatg aaaaagttga agattgttaa
    19681 tcctctttgc cgagaatttg gttcacttcg ctcttataca atactgcttt tgctccaaat
    19741 acggcttgta caccgccacc gacttccagc acgtcaatcg caccgagttt tttcagtgtt
    19801 gctttatcca cggctttcac ctctttcact gccacacgca gacgggtaat acaagcatcc
    19861 acattttcga tattatttgc agagccaaga gcggcgataa ttttatgggc attttcagtc
    19921 agtgagctgg tttgttgttc gactacctct tcactctctt ccgcacgtcc cggtgtcatt
    19981 acgttgaatt ttttgatcag gaataggaac gagaagtagt aaagtgccgc ccacggcaag
    20041 ccgactatga tcactcgaag ccagttagtg ttctcgttgc cttgcaaaat gccaaacagg
    20101 gtgaagtcga tcacgccacc ggagaaggtg ttaccaatcg agatgttgag taagtctgca
    20161 atgtagaacg acacgccgtc taaaaaagcg tggaacacat agagccacgg ggcaacaaac
    20221 aggaacataa attcaatcgg ctcggtaatg ccggtgataa aagaggtgag cgctgcacct
    20281 aagaacagac cgctaatcgc accacggcgg gctttcggca cagcgtgata catcgctaaa
    20341 caggcggcag gtaagccaaa catcatcgta tcgaaacgtc cagcgaagaa acgtgtacct
    20401 tcggtaaata agccttgatg ggttggatcg gcgagttggg cgaagaagat tttttgcgcc
    20461 ccgataatgg tttcaccatt taccacttct gttccgccca attcggtgta ccaaaacagc
    20521 gggtagatca tatggtgtaa gccgaccgca ccgcttaacc gcattaagaa accgtagaaa
    20581 aaggtgccga tttcgcccat ttccgcaatc ccttgccctg ctgaaaccaa ccactgttgg
    20641 aaagccggcc agatcaaaaa gaacactgcc ccgacaaaaa tcgcagcaaa ggcggtcaca
    20701 atcggcacaa accgagagcc gccaaagaag ccgagaattt gcggcagctg aatgttgtgg
    20761 tatttgttat gcagtttcac cgtaatcaag cccattacca gcgagccgat cacaccggta
    20821 tcaatccctt tggtttcagg aggaaacagc ggaatgaggg cagaaatcgt gcctgtcata
    20881 atcaaataac cgaccactgc tgccagtgcc gctacgcctt tatctcgttt tgctaatcca
    20941 atgcctaaac cgatacacag taataatgca aggttgccaa acaccacact gcctgccgat
    21001 gccataatct ggaaaatgcc ctgtaaagtc gggttatcca gtatcgggta ggcttgcacc
    21061 gttgccttat tcgacaaagc tccgccaatc cctaacagca aaccggctgc cggtaaaatc
    21121 gcaatcggca gcataaaagc ttttccgact tgttgcagtt gtttgaacat aaaatttctc
    21181 cttttttatg gttgtatttg atggtttata gcatactgaa atttagccgt atgaggtgtg
    21241 atataactca cagatttgca aaatttttag caaattcgac cgcttgtaaa aaaattaccg
    21301 cttgcggaaa aattgaagta gaattaagca tttttttagc aaacacaaca taaaaaattt
    21361 ggagaagatt atgcctattt tacgttcagc aacttccact cagggtcgta atatggcggg
    21421 ggctcgtgca ttatggcgtg caaccggtat gaaagaaaat gattttggta agccgattat
    21481 tgcagtggtg aactcattca cccaatttgt gccggggcac gtccacttaa aagatatggg
    21541 gcagttggtt gcggcagaaa ttgaaaaagc cggtggggtg gcaaaagaat tcaacaccat
    21601 tgcggttgat gacggcattg caatgggaca cggcggaatg ctttattctt taccaagccg
    21661 tgatttaatt gcagacagtg tggaatatat ggtgaatgct cactgtgctg atgcgatggt
    21721 gtgtatctct aactgcgata aaatcacccc gggaatgtta atggcagcaa tgcggttaaa
    21781 tattccgact atttttgtct ctggtggccc gatggaagcc ggaaaaacta aactttccga
    21841 tcaattaatt cgcttggatt tagtcgatgc aatgatcgaa agtgccgacc cgaatgtgtc
    21901 tgatgaacgt attgatgcga ttgaacgtag tgcttgcccg acttgtggtt cttgttcagg
    21961 tatgttcacc gcaaactcaa tgaactgttt aactgaagct ttaggcttaa gtttaccggg
    22021 caatggttca atgttggcaa ctcatgctga ccgtaaagag cttttcctaa gagcaggtcg
    22081 tgaaattgtg gaactttgcc gtaaatatta ccaacaagac gatgagagcg tgttacctcg
    22141 ctcaatcgct accttcgatg catttgaaaa tgcaatgagc cttgatattg caatgggtgg
    22201 ttcaagtaat accgtgcttc atttactagc gactgctcaa gaagccggcg ttgattttaa
    22261 aatggaagat attgaccgcc tctctcgtgt cgtgccgtgc ttaagtaaaa ttgccccgaa
    22321 taccaataaa taccatatgg aagacgtaca ccgtgccggt gggattatgg gcttgctggg
    22381 cgaattagat cgtgcaggtt taatccatcg ccacgttaaa acagtgctag gtttaacgat
    22441 agaagagcaa ctgaatcaat acgatattat tcgtaataaa gatgaagatt tacacaaatt
    22501 cttccgtgca ggtccggcag gaattcgtac tactaaggct ttctcgcaag attgccgttg
    22561 ggacactgtt gatgatgacc gtgtaaacgg ctgtattcgc aatgtggaaa atgctgtgac
    22621 caaagagggc gggttagcgg tattatttgg gaatattgca gaagatggat gtattgttaa
    22681 aaccgcaggg gtagatgagt ctatttggaa attcactggc accgcaatcg tgtttgaaag
    22741 ccaagaagat gcggtagcag gtattttagg cggaaaagtg aaagaagggc atattgtgat
    22801 tatccgctat gaaggtccga aaggcggccc gggtatgcaa gaaatgcttt atccaactag
    22861 ttatttgaaa tcaatgggct taggcaaaaa atgtgcttta ttaactgacg gtcgtttctc
    22921 tggcggtacc tcagggttat ctatcggaca cgcttcaccg gaagccgctt caggaggagc
    22981 gattgcctta attaatgatg gcgatacggt ggcgattgat attccgaatc gttcgattaa
    23041 cttaatggtt tcagatgaag aacttgctgc tcgccgtgca gaaatggaag cccgtggcga
    23101 taaagcgtgg cagccgctaa aacgtgagcg agaagtgtcg tttgcactaa aagtgtttgg
    23161 acattttgcc acctctgctg ataaaggtgc ggtgagggat aaatcgctgt taaagtaaat
    23221 aaattagaaa aaagaagcat ttcaataata tattgatctg ctctttattc agctgaatat
    23281 ttaatctagc tgaatggaga gcagatcgat agcctaattt acatcttttt gttttgatac
    23341 agggaaatgt attacaagca ttttgccggt tttggcagac ctgcaatttt agtggcttgt
    23401 tttgcaggac catcaggaaa caagcgttgt aaataacggc tgttgccttt ttcttcaccg
    23461 aatttttgtg ccattgtctt taccagcatt cgaattgctg gtgaagtttt gtattcttgg
    23521 tagaaatccc gcaccagata aataatttcc caatgttctg cggttaagct aatttgctct
    23581 ttttcggcga ttttttctgc taattctaca gaccaatcat ttaaattagt taaatagcct
    23641 gaagcatcgg ttgggtattg gatattattt aattcaatcg tcatcaaata aaaatgccac
    23701 ataatgtggc attcctctta aactaaaacg ctagtcgtca ctacctagca caccgaagat
    23761 ttgtaagaag cttacaaata ggttgtagat agacacatat aaatcaacgg ttgcacgaat
    23821 gtagttggtt tcgccaccgt gaataatgtt gctggttgcc agtaaaatcg caccgcttga
    23881 gaaaatgaca aacaagctgc ttagggctaa acttaatgcc ggaattgcta agaagatatt
    23941 ggcaataata ccgactaata ataccacaaa cagggcaacc atcattccgc tgataaagct
    24001 catatctttt ttggtggtta atacataagc tgaacaagcg aagaaaacca atgcggttgc
    24061 accgaatgca agggcgacaa tatcccctaa acccgcaccg atgtaacggt ttaaaatagg
    24121 acctaaggta tagcctaaga agccggttaa agcaaatacg cttaagatac ccgcactgct
    24181 gtttgaggtg gcattcgtca agaaaagtaa gccgtaaaag ccgaccaata atccccacca
    24241 cggcatagcc ggtgcgttca tttgaattgc aacaaaagca acaactgcgg agaaagtcag
    24301 ggtcattgcc aataacatat aggtattgcg aagcactttg tgggtgctaa ttagagattc
    24361 accagttgaa tagctgtgag ctaaacgatt ttccataaaa attccttctg tttttgtgtt
    24421 taaatcggaa catccgatgg attaatatct atggataaat ttccataaat caagaagtaa
    24481 ggtagccgta atttattgta aagtcaatgc gattttgtaa cagaagagta aaaaaaaaca
    24541 tttagttgtg ttacacttaa taccactcta ctttatattc cttttcatcg atgaattcgc
    24601 tatgaagctc aatttcccaa cttatttaac cttatttcgg gtaggattaa ccccactttt
    24661 tattgtggct ttttatctgc cgacaaaata tgcgcctgaa atttcaacac ttattttttt
    24721 tattgcatcg attaccgatg cctttgacgg ctatttagca cgcaaatgga atcaaaccac
    24781 ccgacttggt gcatttttag atcctgttgc ggataaagtc ttggtagctg ttgcgtttgt
    24841 ctgcgtggcg gagtattacc atacttggtg gattactatt ccaatctgca ttatgattgc
    24901 ccgtgaaatt attatttcgg ctttgcgtga atggatggcg gagcttgggg aaagggccag
    24961 tgttgccgtt tcgatttggg ggaaagtaaa aacgactgct caaatgctcg cattaggtgg
    25021 aatgttatgg agacagaacc aactaatgga gattttagcc tttattctgc tttatattgc
    25081 agtgggttta acgatctggt ctatgatgca gtatttaaat gcttcaaaga atagtctatt
    25141 gaagtcataa gcggtcatat ttttattctt ttttgcaatt tgtagagtgg aaatatcgct
    25201 ctacaatttt caattttatc aactctaatg tctgaattta acgctaaatc cttcctgtta
    25261 aatgtgcctc accaaccggg tgtttatcgt atgtatgata gtaaaggcac gataatctat
    25321 gtgggtaaag ccaaagattt aaaaaagcgt ttagccagct attttcgtag ccaactttcc
    25381 agtaaaaaaa cggaagcctt ggtggcaaat cttgctaata ttgaaacgac gatcactcat
    25441 tctgaaacag aggcgttact ccttgaacat aattatatta aggaaaatca gccgaaatat
    25501 aatgtgttgc tcagagatga caaatcttat ccttatattc tgttaactaa acataagcat
    25561 cctcgtttaa cagcatttcg tggtagtaaa aagatcgccg gtgaatattt tgggccttat
    25621 ccgaatgtta cggcagttcg ggaaacactg aatttattgc aaaaaatttt tcctattcgt
    25681 cagtgtgaag atacttatta taaaaaccgt tcacgacctt gcttacagta tcagatcgga
    25741 cgctgtttag ccccttgtgt agagggctgt tattcacccg ttgaatacga tcagcaggtt
    25801 aatttggttc gtttgttttt acagggaaaa gatcaccaag tagtcgagca tctggtacag
    25861 aaaatggaag atgcggcgga ggctttggat tttgaaggtg cggcacgttt tcgggatcaa
    25921 attcaatcag taagagcggt gcaagaaaaa caattcgtct ctaatgatag gctagatgat
    25981 cttgatatta tctcgatcgt ttatcaaaat gggattgcct gtgtgcatat cttatttgtt
    26041 aggcaaggta aggtactagg caatcgttct tactttccaa aagtgccaag taatacagat
    26101 ttaaccgagc tcgcagatac ctttgtcggt cagttttatt tacaaatgaa ccagcaccgc
    26161 accataccta accaaattgt aattgatcat caattaagtg aatctaaggc actcagtgaa
    26221 attttaagtg agcaagcagg gcataaagtc agcattttag ataatgccat cagaggtgat
    26281 aaacagcgtt atttagcttt agcgagaact aatgcaatgg cagcattagt tttacaactt
    26341 aagcaagaat cccatattca aagccgttat caggcattga aagaaatgtt gaaaatgtca
    26401 gagattaaaa gaatggagtg ctttgacatc agtcatacaa tgggcaacca aacagtggct
    26461 tcttgcgtgg tgtttgatga aaatgggccg ctaaaatcgg attaccgccg ttttaacatt
    26521 gaggggatta ccggaggtga tgattatgca gcaatggagc aggctctctt gaaacgctat
    26581 aatcgagaat taccgccaga aaagatccct gatattattt ttattgatgg tggcaaaggg
    26641 cagttgaacc gagcgttaga tgtcttcgct aaacttgatg tggaatggga taaatcgaaa
    26701 ccgcttttaa ttggtgtggc aaaaggcgta gaacgtaaag ctgggctgga aactttaatt
    26761 atcagcaaat gggataaaga aattcactta ccgccagata gtcttgcctt gcatttaatt
    26821 cagcatattc gagatgaatc ccaccagcat gccattagtg ggcatcgtaa aaaacgccaa
    26881 aaggccttta ccgaaagtgg attagaatct attgccggtg tcggtgcaaa acgccgacaa
    26941 gcgttgctaa aatatttagg cggaatgcag ggggtgaagt ctgcaacctt ggaagagatt
    27001 caatcagttc cgggaatttc taaagcgttg gcagaggtta tttttgatac attaaaaaat
    27061 agttaaatta tcaatagcga tatcgcttcc agccgtaatg gtagcccact cctatgcttg
    27121 ggtaaattat agggtgaatt ggcagattta tgctttctga gcgtttatcg ctttggttta
    27181 atggctcatc atgttgcttt gtatttttat caacagtttg cttattgatt actcgttgat
    27241 ggtaatcctg aactgcttgc atatccattg gtactgtgct ttgttgttgg ggtgtcgaac
    27301 aggcggttag tgcaacgctc aatccgagta aaattaattt tttcatatca tttccttata
    27361 ttgcaaaata ttttgctttt ttgaccgctt attttgctat taattcttaa aaagattatt
    27421 ttatccataa aaaaggacgc actaggcgtc ctcatttcta ttctttaaaa ttaaagagca
    27481 gattttgctt tttcaactaa agctgcgaaa gcaactttgt caaatactgc gatgtcagct
    27541 aagatcttac ggtcgatttc aacagatgct tttttcaagc cgttgatgaa tttgctgtaa
    27601 gataaaccgt tttgacgagc tgctgcgtta atacgagcaa tccataattg acggaattga
    27661 cgtttacgtt gacggcggtc acggtaagca tattgagcag ctttaactac tgcttggaaa
    27721 gcaacgcgat acacgcgtga acgtgcacca taataacctt tagcagcctt aagaactttc
    27781 ttatggcgtg ctcttgcaat aacaccacgt tttacacgag ccattattta atctcctaat
    27841 tgtctatttt gattggtggt cgtcatcacg acctttacta agaattctat ccgtacgtcc
    27901 gtactttact acactacgct aacctaaaag gcttatgcgt atggtaagca cgctactact
    27961 aaaacttggt cagctttcgc taccattgat ttgtgacgta attgacgttt acgtttagtg
    28021 gttttcttag tcaaaatgtg acgtaagtga gattgtttac gtttaaaacc gccggaagct
    28081 gtttttttga aacgcttagc agcaccacgt actgttttaa ttttaggcat tgttaaaaaa
    28141 ctccgcattg tttgttagat attatgaaaa taaggcgaat tttgtgaaca aaattacttg
    28201 gaagcactta ttctccgcta tacgattttc atcgttaaaa agtcaagcag gctgctgagt
    28261 ttgcctgttg agcattttct ctttcttggc taggcaaaaa agcttgcgaa ttttagcgaa
    28321 aatataaccg ctatgcaagc caatttaagc tttatcaaga aaaaagcaca ttaaaacaat
    28381 gtgcttatcg aaattatttc ttcttaggtg cgatcaccat cacaacttgg cgaccttcca
    28441 atttgcctgg ggctgactct accattgcaa tttctgcagt atctgctttg acacgttcta
    28501 aaacgtccat accgatttct tggtgagcca tttcacgacc acggaaacgc actgtgattt
    28561 ttactttatc cccatcttct aagaaacgga taatgctacg aagtttaact tgataatcgc
    28621 catcatcagt tcccggacgg aatttgatct ctttaacttg aacaactttt tgttttttct
    28681 tttgttcttt tgctgctttc tctttttcgt agatgaactt accatagttc ataatacgac
    28741 aaactggtgg ttcagcattt gggctgattt ccactaaatc caattcagct tcttctgctc
    28801 tatttagagc atcttgaagt gatacaatac caacttgttc gccgttttca tcggttaagc
    28861 gaacttcttt tacgccacga atttcgtcat taagacgatg tgcacgattt gattgaacac
    28921 gttttacagg tttaatagcc ttattccttc tagtaaattt ttgcttaaat tttaccgctt
    28981 gagagcgtat aaatatttta gattgcttgt tttaagtgat taaaaaacag ctaaacgtgc
    29041 ggattctata agattttcag tgcttatgca ataataaagc ccttatttaa ctgcctattt
    29101 tcggttattt tgatattctt tgattaaact cataaatgct tgcccaaatc gttcaaattt
    29161 tcgttcacca acaccattaa tttctaacat ttccactttt gaagtcggga gaaattctgc
    29221 catttcttgc aaggtggcat cgttaaagac gatataaggt ggaatatttt cgaggtcagc
    29281 tatctgcttg cgtaaaaaac gtaagcgtgc gaataggtct ttgtcatagc gatgacttgc
    29341 ttgtttttgc acaaatgcag tcgcagatat acctaaacgt ggcaatgcaa gctgaagttg
    29401 cttttctcca cgcaaaaatg gtctggcact ttcggttaat tgcagagcgg aatggttagc
    29461 aatattttga ataatcaacc ctaaatgaat cagttgccgc accacatttt gccaataatg
    29521 ttggctttgt tcttttccga taccataaac ggaaagttga tcgtgttgat gttcacgaat
    29581 tttgagattg ttcattcctc gcaataccgc aataatatgg tgctgaccga aaatttgacc
    29641 ggtgcggtaa atcaccgaca tcactttttg ggcatcaagt aagccatcgt attgttgcgg
    29701 tggatctaaa caaatatcgc agtttttgca ttgctcttgg cgatgttccc caaagtagtt
    29761 gagtaagact aaacggcggc aagtctgtga ttcggcgaaa tcgccaattg cctgtaattt
    29821 atgctgttta atatttctct gttcgctttc cggctcttcc aataatattt tttgtaacca
    29881 agcataatcg ctaggatcat aaaaaagcac ggcttcagaa gggagatcat ctcgcccggc
    29941 tcgtccggtt tcttgatagt aagattcgat agagcgaggt aaatcgaaat gtaccacaaa
    30001 acgtacgttg gatttgttga tccccatacc aaacgcaata gtggcaacca caatttgaat
    30061 atcatcacgc tgaaaggcat tctgcactcg ttctctctgt tcaaaactca taccggcgtg
    30121 atagcccatc acgctgattt tacgggctga gagtttctcg gtgatttctt ccactttttt
    30181 gcgactgttg cagtaaacaa taccgctttt gccttgctgt ttgctgatga atttaatgag
    30241 ctgttcaagc ggtttaaatt tttcctgcac ggtgtagcga atattggggc gatcaaagct
    30301 gcctaaatag atatgtgggc tatttaagcg taaatgatgc agaatatcgg agcgggttgt
    30361 tagatctgcc gtggcggtga gtgccatcaa cggcacattc gggaaagtgt ttcgtaagcc
    30421 acctagcagg gtatattcag ggcggaaatc gtgcccccat tgggaaacac aatgggcttc
    30481 atcaaccgca ataaagctga ttttacatag cgaaataaag tggaaaaagc cttgagtcat
    30541 taccttttca ggggaaagat agagtaattt taattgaccg gataaggctt tttgttccac
    30601 aagttgctgc tcttcgagcg tttgagtgga gttaagataa gctgcttcaa tgccgttggt
    30661 gataagttga tccacctggt ctttcatcaa cgaaataagc ggcgaaatca ccaaagtgat
    30721 gccgtctagg cacaaagccg gcacttggta gcaaagggat ttgccaccgc ctgttgtcat
    30781 aatcacgagg caatcacgat tttccaacac ggcattgata acttcttctt gcccgtctcg
    30841 gaatttttga tagccaaaaa tattatttaa aacagaaatt gcggtggtgt tcattggtag
    30901 ttggttgcta cttatgatag tactcgtctt ctgagagtat cttttaaaat gaaaataaag
    30961 cactcatcaa agacgagtgc tgtcttagtt aacaattagg cattagaaag aaacgctttc
    31021 tccgtgtcga gcaaaagctt cttctaaatg ttgccagaac gagcgacctt catctgttac
    31081 ccattcgcct tctacatttt taaagtggaa accacccaat ttgctggcaa gccataattc
    31141 cagcattgcc tcttgtttat taatgataac ttgcgattca tcatcaaagg ttaaggtgca
    31201 gaccgctcct tggatttcag tatcgactga taatccttcg tcataaattt tttcttcaat
    31261 ttgttgccat acttgctcta cggcttggtg gaattgtgct gtgttcattg gtgtatcctt
    31321 atttgaatgt tatataagta gtaaatactt tttgttttag ctgtttaaat ggtctgtaaa
    31381 gttctttttg tatttttgtt aagaaataat taggcttttt aagtttagct tgatttttta
    31441 tttt
//
LOCUS       DANLZD010000007        30635 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.007, whole genome shotgun sequence.
ACCESSION   DANLZD010000007 DANLZD010000000
VERSION     DANLZD010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 30635)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30635)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30635
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.007"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            1..507
                     /locus_tag="PXE26_000217"
     CDS             1..507
                     /locus_tag="PXE26_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HDL5592843.1"
                     /translation="MAMSNIGLDKEIAKKLADELNGLLATYQVFYTNVRGYHWNVRGV
                     NFFELHAKFEEIYDDLVTKVDEIAERILTLGHTPQNAFSQYLTKSQIQEHIGVSAAQE
                     CLRGTLNGFKTLLGQQREILALANDANDEGTASQMSDYIKEQEKLVWMFTAACAECSD
                     YAQGCSCN"
     gene            566..1279
                     /locus_tag="PXE26_000218"
     CDS             566..1279
                     /locus_tag="PXE26_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HDL5592844.1"
                     /translation="MAMSQGFQFKQFFIRHDRCAMKVNTDGILLGAIAHIKDCQNILD
                     LGIGSGLVALMLAQRTDDCCHITALELEPNAYQQAVENAQNSAWANRISVLQGDVMQQ
                     AFEQKFDLIVSNPPYFADSLAARTTERDLARSISHYSHLNWLAKAKPWLAENGKITLI
                     LPIAAAEKLVDQSEQIGLYCVEQWLIFTKSGKLAKRSIVSFSLNKQKREHKELIIYDL
                     DNCYTTEFKRLTQDFYLNF"
     gene            complement(1390..2394)
                     /locus_tag="PXE26_000219"
     CDS             complement(1390..2394)
                     /locus_tag="PXE26_000219"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005651072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDL5592845.1"
                     /translation="MAFNLKNRHLLSLVNHTEREIRFLLDLARDLKRAKYAGTEQQKL
                     KGKNIALIFEKTSTRTRCAFEVAAYDQGAHVTYIDPNSSQIGHKESMKDTARVLGRMY
                     DAIQYRGFKQSVVQELADYAGVPVFNGLTDEFHPTQMLADVLTMIENCEKPLSQISYV
                     YIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEDAFVKMCEKFAAESGARMTVTED
                     IETAIKGVDFVHTDVWVSMGEPLESWTERIDLLMPYRVTPELMQATDNPKVKFMHCLP
                     AFHNSETKVGKEIAEKYPALANGIEVTEEVFESPMNVAFEQAENRMHTIKAVMVASLA
                     "
     gene            complement(2482..3321)
                     /locus_tag="PXE26_000220"
     CDS             complement(2482..3321)
                     /locus_tag="PXE26_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HDL5592846.1"
                     /translation="MQSYPYLLVNVFATSHFGGNPLAVFYEADGLTDLQMQLIARQFN
                     LSEVVFIQSSTDSQAVKKLKIFTPDYEMPFAGHPTVGAAFVLHSAFDFPTTYRLQTNA
                     GLVAIQHQHNVTTFALTNGVNLENTPLSRAECASILGLNVADIASEPCYVNTGVEQLL
                     VELASQQAVEKCKINANLAEKAFLKDSVYVWCREGNEAKVRLFFQSQGSIVEDPGTGS
                     AAANLGGWHIAQGKIPIQLQISQGDEIQRPNRLLLKVDQNGKIFVGGEVILVGKGEFY
                     LPE"
     gene            3511..4845
                     /locus_tag="PXE26_000221"
     CDS             3511..4845
                     /locus_tag="PXE26_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL5592847.1"
                     /translation="MLYAEFLLLLAFLYAGSRYGGIGLGVVSGIGLFVEVFFLGMPLS
                     APPISVMLVILAVVTCASILEAAGGLKFMLQVAERILRSNPKRITFLGPLVTYLMTLM
                     LGTGHSVYSIMPIIGDIALKNKIRPERPMAAASVASQLGITGSPLSAAVAYYLTEIVK
                     LPGFEGVTLLNVVGVTITATFCGVIAMSLYSLRRGKELEDDPEYQRRMQDPELRKQIE
                     QTSATSLDEKLPASAKNSVYLFLAAIATIVIIAMIPAIKPTVAATGKVAGMDQIIQIV
                     MLTFGGLILILTKTDPKKVPNGIVFKSGMVATIAIFGIAWMSDTYFTHAMPAFKEGVT
                     EMVRAQPWTFAFALFAVSVVVNSQAVTAKMLLPVGIAMGLPAPLLVGLMPATYAYFFI
                     PNYPSDIATVNFDVTGTTKIGKYYFNHSFMAPGLVGVITACIVGIAVANVLI"
     gene            complement(4925..5335)
                     /locus_tag="PXE26_000222"
     CDS             complement(4925..5335)
                     /locus_tag="PXE26_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDL5592848.1"
                     /translation="MNSTLTNLQPLAFLITRVVAGYMFLLHGTAKFFEFPMSMTNGNG
                     SVPLASIYGVGGILEIVGGIFFILGLFTRQTAFILSGMMAYAFFIAHGAQGNVLLPLL
                     NGGELAGVYSVLFLTYIFIGGGKYSLDAKLFNKA"
     gene            complement(5458..6135)
                     /locus_tag="PXE26_000223"
     CDS             complement(5458..6135)
                     /locus_tag="PXE26_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDL5592849.1"
                     /translation="MNLFGFRCFHCNHPLAIGVQGICSHCQKLLKPTPYCRHCGMSAV
                     EFRNACGYCLKNEPKWHKLVRVNEYRAPLSHWVHQFKFQQQYWWDQALARQLLLAIKQ
                     AQREQVLSLPEVIMPVPLFWHRHWKRGFNQSELLCDWLSKWLQIPLDTQSLQRVRATV
                     SQRELTAAERRKNLRGAFFYQPLKAYKRVAIVDDVLTTGSTLNVICAELLKAGVVEIQ
                     VWVLARA"
     gene            6253..7065
                     /locus_tag="PXE26_000224"
     CDS             6253..7065
                     /locus_tag="PXE26_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDL5592850.1"
                     /translation="MKSLQKPIKIVFFDIDDTLYVKHKAYIPKSITEQVLPRLKAKGI
                     IPAIATGRNHGCFPEALKPYLNPEIGFELFVTINGQYNFYKDQIISDYSLSREQIERI
                     IEKANALGILYAFITPMTIAVSETNPIVHEAVLPITPNYLIDPHYYEKEKIVQMLLFY
                     TEEQKQAVENSGIFANDLKEARWHPNAVDILRKENSKARGIQDVLATLNIEIESAMAF
                     GDGINDLEMLPTVGVGVAMGNGVPELKAVADFITKPLEEDGILYALETLEVI"
     gene            complement(7113..7382)
                     /locus_tag="PXE26_000225"
     CDS             complement(7113..7382)
                     /locus_tag="PXE26_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL5592851.1"
                     /translation="MGLLYLLLLNTLIGYGSYGEALNHWDTSKVSIVTTMLPIFTMIF
                     SNLSYYFYPHIFAKPDMNWISYLGALVVVSGAILAIAGDKLFRRN"
     gene            complement(7355..8032)
                     /locus_tag="PXE26_000226"
     CDS             complement(7355..8032)
                     /locus_tag="PXE26_000226"
                     /inference="COORDINATES: protein motif:HMM:NF013088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5592852.1"
                     /translation="MKQRPLLGFSLALTAAMTWGTLPIAAQQVLKVIDAQTLVWVRFV
                     VASVGLLLILGFAKRLPKLTACSKKELGLILLGVCGLSANFFLFAEALHYVSPTINQV
                     LWQLAPFSMILLGVLLFKEKFGLFQKIGFVLLIAGLVAFFNDKFAEILQLNTYALGVL
                     LSAGASLIWVLYGVAQKLLLAKFNSQQVLFIIYIGCSLLMLPFASPAQLGNLEDGFLW
                     GCFIYCC"
     gene            complement(8134..8391)
                     /gene="rpmA"
                     /locus_tag="PXE26_000227"
     CDS             complement(8134..8391)
                     /gene="rpmA"
                     /locus_tag="PXE26_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007369914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HDL5592853.1"
                     /translation="MATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK
                     FHAGSNVGMGKDHTLFATADGKVKFEVKGEKSRKYVSIIAD"
     gene            complement(8412..8723)
                     /gene="rplU"
                     /locus_tag="PXE26_000228"
     CDS             complement(8412..8723)
                     /gene="rplU"
                     /locus_tag="PXE26_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015960603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HDL5592854.1"
                     /translation="MYAVFQSGGKQHRVSEGQVVRLEKLELATGEKVEFDSVLMVVNG
                     EDVKIGAPVVAGAKVVAEVVAQGRGEKVKIVKFRRRKHSRKQQGHRQWFTEVKITGIQ
                     A"
     gene            9001..9999
                     /gene="ispB"
                     /locus_tag="PXE26_000229"
     CDS             9001..9999
                     /gene="ispB"
                     /locus_tag="PXE26_000229"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HDL5592855.1"
                     /translation="MAVQLFSLEQIQALANEDMQAVNAEILAQLNSEVLLINQLGHYI
                     IAGGGKRIRPLIAVLAARALGYRGKKHITAAAFIEFVHTATLLHDDVVDESDMRRGRP
                     TANAHFGNAASVLVGDFIYTRSFQMMTDLDSLRVLKVMSAATNALAEGEVQQLMNVND
                     PNTTEANYMRVIYNKTARLFEAATQCVAIAADASEEIETALKNYGCYLGTAFQLIDDI
                     LDYSAQSESLGKNVGDDFVEGKPTLPLLHAMHAADKAGKTTQAELIRNAIENGGELEQ
                     IPQVLAIMQEHQSLDYAMQKAREEAQKAVDSLGVLPESEYKQALVSLAYLSVDRSY"
     gene            10102..10848
                     /locus_tag="PXE26_000230"
     CDS             10102..10848
                     /locus_tag="PXE26_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HDL5592856.1"
                     /translation="MTEQNQRPQEHIESVRARRRAQNQKKGPNAPFVREKLTLPNGHN
                     KLLLHSCCAPCSGEVMEAIHASGIEFTIYFYNPNIHPLKEYLIRKEENIRFAEKWGIP
                     FIDLDDDYENDRKEWFKKAKGMEWEPERGIRCTMCFDMRFEKAAEYAHNNGFPVFTSC
                     LGISRWKDMNQINDCGHRAAAKFDDVVYWDYNWRKGGGSQRMIEISKRERFYQQEYCG
                     CVYSLRDSNKWRLETGRQRIEIGKLYYSPD"
     gene            11265..12200
                     /gene="fabD"
                     /locus_tag="PXE26_000231"
     CDS             11265..12200
                     /gene="fabD"
                     /locus_tag="PXE26_000231"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HDL5592857.1"
                     /translation="MSKFAMVFPGQGSQAVGMLADLAPQYPIVEETFKQASDVLGYDL
                     WDLVQNGTAEELGQTHRTQPALLASSVALFRIWQQKFPEQKPAVMAGHSLGEYSALVC
                     AGVLDFQDAIKLVELRGRAMQEAVPAGSGAMFAIIGLDNESIIKACEQAASETGEIVS
                     AVNFNSPGQVVIAGTKAAAEKAGELCKAAGAKRALPLAVSVPSHCALMKPAAEKLAEA
                     LQNIELNQPLVPVINNVDVAVETDADTIRNALVRQLYSPVRWTETVEKMAQDGITTLY
                     EIGPNKVLTGLAGRIVKELSAKAVNDVASFEAVEA"
     gene            12217..12681
                     /locus_tag="PXE26_000232"
     CDS             12217..12681
                     /locus_tag="PXE26_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592858.1"
                     /translation="MSKETLFMLISALIALVILPLAYTVGIAKETLGGNMGMLSIAAG
                     CSFLAYFLSLNPKIRHAFIGGSAITAAAIQAWVLYGVLLSENDPKSAVVLFQIYLFSS
                     LGPLFFSAIWAFTRPRWIYPKQGSAVKYALFGGLTTVINYLITLFIFYILTL"
     gene            12702..13424
                     /gene="fabG"
                     /locus_tag="PXE26_000233"
     CDS             12702..13424
                     /gene="fabG"
                     /locus_tag="PXE26_000233"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDL5592859.1"
                     /translation="MSKIALVTGATRGIGKAIAEELVAKGYIVVGTATSEKGAESISA
                     YLGENGKGLVLNVADAESIESVLKQIKETFGDVDVLVNNAGITRDGLLMRMKDEDWFD
                     IIQTNLTSVYRLSKAVLRPMMKKGGRIITIGSVVGSMGNPGQTNYCAAKAGLVGFSKS
                     LAKEVASRGITVNVVAPGFIATDMTDELTEDQKNAILSQIPAGELGSPQDIAKAVAFL
                     ASDDARYINGETIHVNGGLYMS"
     gene            13543..14841
                     /gene="brnQ"
                     /locus_tag="PXE26_000234"
     CDS             13543..14841
                     /gene="brnQ"
                     /locus_tag="PXE26_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transport system II
                     carrier protein"
                     /protein_id="HDL5592860.1"
                     /translation="MTRNTLVVGFLLFAIFFGAGNLIFPPKLGYESSTEFFSAISGFV
                     LTGVGLPLLGIIVSAFYNGGYKSALDKIHPWFSLAFLTSIYLAIGPFFAGPRTAATAY
                     EMAIMPFLGDSSQVSMLIFTLIYFAFTLWLALNPNKMVDRIGAILTPILLITIIGLVI
                     RAGFILDTDPQITTPNTNEQSYFFKGMVDGYLTMDALASLAYSVIVLNAIRGKGVSQA
                     ALQRQTVSAGLVAAVALAVIYISLGWIGNNMPISANTLSMLSERKLDLGTYILNTVTT
                     QAFGELGRSVLGVIVSLACLTTAVGLAVSVSEYFNEIFPKISYKVYAILFTVISFTVA
                     NQGLKEVISKSIPVLLVLYPIAMTVILMLLINLVIKLPLSAQRLSLLLVTIVAIASVA
                     GVGFTENLPLKSYSMEWLPFAIIGAIIGAIIHPLTGRKHK"
     gene            14887..15711
                     /gene="mutM"
                     /locus_tag="PXE26_000235"
     CDS             14887..15711
                     /gene="mutM"
                     /locus_tag="PXE26_000235"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HDL5592861.1"
                     /translation="MPELPEVETSVRGVSPYLVGQTIEQIIVRQPKLRWTVSPELSQM
                     AGAKITAVERRAKYLIIRTDKGDILVHLGMSGSLGILQERQQKEIGKHDHVDLITQNG
                     TILRYNDPRKFGCWLWAEKAEDHELLRKLGPEPLSNDFTADYLFAKSRKKTTACKTFI
                     MTNEVVVGVGNIYACESLFMAGIHPELAAQNLTKKQCERLVKTIKEVLTKAIIQGGTT
                     LKDFIQPDGKPGYFAQVLQVYGRKGETCNDCGKPIETKVIGQRNTYFCPKCQRLPK"
     gene            complement(15794..16228)
                     /gene="dtd"
                     /locus_tag="PXE26_000236"
     CDS             complement(15794..16228)
                     /gene="dtd"
                     /locus_tag="PXE26_000236"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HDL5592862.1"
                     /translation="MIGLIQRVKFAKVEVEGQVVGEIASGLLVLLGVEKDDDEAKADK
                     LLEKVLNYRVFSDSEGKMNLNVQQAGGSLLVVSQFTLAADTNKGLRPSFSKGASPVDA
                     ERLYAYFHQQAATKIHTQTGQFAADMQVSLQNDGPVTFWLQV"
     gene            complement(16203..17048)
                     /locus_tag="PXE26_000237"
     CDS             complement(16203..17048)
                     /locus_tag="PXE26_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor BrkB family protein"
                     /protein_id="HDL5592863.1"
                     /translation="MLNRLWRFIKLFAKRYNENNIAISAGYLTYSTMLAIVPFIVVLF
                     SIFTFFPIFHEANEQLKAFIYDNFAPSASEMVSEYIELFVSNAKQMGLVSFIGLFVVT
                     IMLIKSIDEALNTIWHDNRQRPMWFSFLLYFLILLFGPLLAGASIAISTYVMSLSIFN
                     GNGALSLGQHLLELMPFLLIWLLFTLVYKFIPIRKVKFQHAAIGALMAAIFFTLGKKA
                     FIWYITAFPSYQAIYGALAVLPIMLLWIQLSWQVVLLGGQFAAVLDEMETDKGSINDR
                     LNSAG"
     gene            complement(17050..18288)
                     /gene="proA"
                     /locus_tag="PXE26_000238"
     CDS             complement(17050..18288)
                     /gene="proA"
                     /locus_tag="PXE26_000238"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HDL5592864.1"
                     /translation="MQMIELAQQAKQASFELAQFGNLQKNQALLTIADSLEQRAEEIL
                     YANAKDIEFAQAQGISLAIIDRLLLNEDRLKDIANDVRNVAKLADPVGQVMDGGVLDS
                     GLKIERQRVPLGVILTIYEARPNVTIDVASLCLKTGNAVILRGGKETKFTNAVLVDVV
                     QDALEKAGLPKLAVQAVTDPDRALLLELLKLDRYIDMVIPRGGAGLHQFCKENSTIPV
                     IVGGIGVCHLFVEKTADQEKSLEVIANAKTQRPSTCNTLETLLVEKAIAVEFLPKLVA
                     KMQQLGVTIHSNDLQKIEGIEPLDQAKLSQEWLSLDLNVVVVNDLQQAVEHIRHYGSQ
                     HSEGILTSDYQLARQFVQQVDAAAVYINASTRFTDGGEFGLGAEVAVSTQKLHARGPM
                     GLEALTTYKWVCEGDYLVRG"
     gene            18572..20455
                     /gene="mutL"
                     /locus_tag="PXE26_000239"
     CDS             18572..20455
                     /gene="mutL"
                     /locus_tag="PXE26_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HDL5592865.1"
                     /translation="MINTTPKQLIHILPPQLANQIAAGEVVERPASVVKELVENSLDA
                     GANTIQIDIEKGGSQLIRIRDNGCGISKQDLPLALARHATSKISSLEDLEAILSLGFR
                     GEALASISSVSRLTLTSRTAEQTEAWQAYAQGREMAVEIQPASHPIGTTIEVANLFFN
                     TPARRKFLRTDKTEFAHIDEVVRRIALAKPNISFSLSHNGKIVRQYRKVQDNSVEQQQ
                     KRVAAICGDEFIQHSTYIDRQHGDLHLHGWVGSPALARLQNDLCYSYVNGRMMRDKTI
                     NHAIRQAYGDSIASGYYPAFVIFLDLDPTMVDVNVHPAKHEVRFHQGRLVHDFILQGV
                     LNSLQQTQPTLELRNEVNEPLPSYVQDTNRQAAGQNIFVSQTAPQAAEFTQKNASRSS
                     YTPKFERSNSVSSSAQKWYKELVGGDLHQTTPTIKTQSTLVEPKTEPQTEHKTEAVSQ
                     KITQIAPLASHHSQALAIVKNQAVLIKEEENFYLLPLATLAELKLKLQLEKGQSQALL
                     IPLNLSLDQQQTERWQQTKEELTKLGFSISEKQWQAQTRLTVLSVPQAVREQNLQQLL
                     FALFNQTQAVNLAEFFAKKCEKPTACTLSDVIALLSEIELYANGKKELEGIRKEVDFS
                     KFL"
     gene            complement(20474..20743)
                     /locus_tag="PXE26_000240"
     CDS             complement(20474..20743)
                     /locus_tag="PXE26_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="HDL5592866.1"
                     /translation="MREIEYSNAFKRDYKKCAVESLSSSLIEALYFLINDKPLPEKYC
                     DHALTGEWKGFRDCHIQPDLVLIYRKVEDDKLELLRIGSHSHLFG"
     gene            complement(20730..20996)
                     /locus_tag="PXE26_000241"
     CDS             complement(20730..20996)
                     /locus_tag="PXE26_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HDL5592867.1"
                     /translation="MANSALVSVRISPEIKEQASEVLAGIGLTVSDVMRMTLAKIATE
                     KRFQFDYQPNFETAEVLRAVKNGEEKLHSANSIADLMEQLNARD"
     gene            21436..22389
                     /gene="miaA"
                     /locus_tag="PXE26_000242"
     CDS             21436..22389
                     /gene="miaA"
                     /locus_tag="PXE26_000242"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HDL5592868.1"
                     /translation="MNKKPLALFLMGPTASGKTDLAIALRQELPVEVISVDSALIYKG
                     MDIGTAKPSKEELALAPHRLIDILDPAESYSAMNFHADALREMADITSQGKIPLLVGG
                     TMLYYKALLEGLSPLPSADPAIRAEIESRAAQHGWATLHQELVKIDPIAGARINPNDS
                     QRINRALEVFYITGKTMTELTAQQGEALPYNILQFAIAPQDRAVLHQRIEQRFHKMIE
                     LGFEEEVKRLFLRKDLHINLPSIRCVGYRQMWEYLQGDISLDEAIFKGICATRQLAKR
                     QITWLRGWQGELTWLDSLAPTSSKAKMVEKIDHYLKNCDNI"
     gene            22458..22730
                     /gene="hfq"
                     /locus_tag="PXE26_000243"
     CDS             22458..22730
                     /gene="hfq"
                     /locus_tag="PXE26_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HDL5592869.1"
                     /translation="MAKGQSLQDPYLNALRRERIPVSIYLVNGIKLQGQIESFDQFVI
                     LLKNTVSQMVYKHAISTVVPARALSHNNNNQAQHAQPAAEVTEQAE"
     gene            22750..24135
                     /gene="hflX"
                     /locus_tag="PXE26_000244"
     CDS             22750..24135
                     /gene="hflX"
                     /locus_tag="PXE26_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HDL5592870.1"
                     /translation="MLNESLPNSEENSAFGFALSEASQTTEAASPTDPENQDKAILVH
                     LYLGQHKDVENLLEFKTLAESAGVEVLATLTTSRQSSHIKYYVGQGKAEGIAEAVERL
                     GATVVLVNHQLSPAQTRNLQSLCGCRVVDRTGLILDIFAQRARSHEGKLQVELAQLRH
                     LSTRLVRRVTNQDQQKGGAVGLRGPGETQLETDRRLIKVRIQQLLNRLEKVSKQRNQN
                     RKTRQKADIPTVSLVGYTNAGKSTLFNAITQAGVYAADQLFATLDPTLRRIQVQDVGT
                     TILADTVGFIRFLPHDLVSAFKSTLQETTEATLLLHVIDGSDERKNENIDAVNQVLDE
                     IGALDIPTLLVFNKIDKLEGVEPHIERNADGTPVAVYLSAQENSGIELLFQAIQERLR
                     SNLVCENLLLPVTAGAIYAQFKAENCIKTEHFNEFGERIISIEINEVQWNKWVKQFPD
                     LAEYIELAKWG"
     gene            complement(24357..30428)
                     /locus_tag="PXE26_000245"
     CDS             complement(24357..30428)
                     /locus_tag="PXE26_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL5592871.1"
                     /translation="MNKIFKVIFNQTTQKMEVVSELARSQGKAASSTDKRGTIKLAAA
                     SILGGATLISGMAAFMLSATPAEAAVIIDRIEVQQKAPKKVVNGGIDIYTNTSLATDS
                     ITNPYNYFNPGSLSYADRTKLQESNNSVNKEKDSRLLYKSNTTSAIVIGHNAVALDNN
                     RKSRGKPKASGIAIGDYSYSGGGLSIAIGSFSRTASIGSVALGTSARAEGFNSFAAMR
                     QSAAIADYSTAIGSTSWANATASFAIGASATALGDRSFAIGSGTPQTVDGSYGHENRR
                     SIYDGQNNTLAFGTDAFSIGTKAKTNGNHSFAIGTNAWSGGFKLENSNISELGQVINP
                     DTAKVANNAFALGTNTRANSNDTLAFSTNASATGDGSIAFGVNSNTTGIGAIAFGNAS
                     KAWKSNAISIGWNANSHAEKVISIGSHSNASKDGAMAIGDTANSSGNNSVAIGYSANV
                     SKANATAVGTRANITHEGGTAIGFEAKSKGNYATAIAYNSTAKGKNSIAAGVNSTVSG
                     IRAAALGYNNTVSGKDTFVLGSNVTVKTKGSVILGSDSTEATATKEDTATVGTLKYSS
                     FAGDENVVDGDYVSVGNATNARQIKFVAPGKIASNSTDAINGSQLYAVADTLVKTGFN
                     ITADHSGLGGGAKEDNVKLGETVKYTSTDKNVVTTVTNNTIDFGLSDNISVGGKPGKD
                     GSVGVKGADGKDGVTIKPEAIVFHGVDGVNGKDGKDGKASIKVEKGAKGLDGNDGKDG
                     ESKTRIVYEKPNGDKEEVATLNDGLKFGANDGKVHDAKLNTQVDIKGATTNTDWAKFD
                     AGKNIMTQVVGNTITVALAKDLAGLDSATFGTQGDSTVINKDGVTIAKKDPNDATKSN
                     VTLTEDGLSNGGNQITNVDSGLKGKDGQPVKLTEAAGDVLNNAVNVGDLKNTVTETVT
                     EVTTDAFGLKDENNKEFKQNLGTTAKIIGDGNVKTNVVEKDGGHALEVSLVNNITVGK
                     DGEPGKVGIAGKDGKDAIALDGKDGAITVGRPGKDGIDGTIGVNGKDGSAVVLNGKDG
                     SIGLNGTNGKDGLTIKGTEGKPGLVGKDGLPGKDGVTRIQYQPTDGNGDPIGEPEQVA
                     TLNDGLHFKGDDATLVSKKLNETLEIIGGADKDKLTANNIGVNSKDGKLSVQLAKDLK
                     DLNSATFKPQDGENGQEGKGPTTVVNNNGVTITPKDGTDGKAVKLTEDGLDNGGNQIV
                     NVKSGIDGLAGKDGINGKDGKPITSVNDLTDDQLKEVGTNAANINDVVNASNDIIEKG
                     FSIAADNGETDHVKLGETVKYTSKDKNIITTVSDNVIDFTLNNDFTIGGPGKDGSIGV
                     KGADGTVGVTLNGKDGSIGLTGPKGADGKDGASATISVKDGAKGLDGNDGKDGESKTR
                     IVYEKPDGTTEEVATLNDGLRFVGDDGKEIVKKLNETLKISGGDTDLTNLSDNNIGVV
                     NNNGALTVKLAKDIDLTKDGSVTIGDTTVNNDGLTIKDGPSVTKAGINAGDKKIINVQ
                     DGEISATSKDAVNGSQLYQVQEVANAGWNLTANGKDKGNVKPGATVDLNNKDGNIIIT
                     KEGNNVTFGLKNNLTIGGKDGKDGQIGIAGKDGKDGVTIKGDGTITAGRDGKDGVDGS
                     IGATGKDGASVVLNGKDGSIGLTGPKGADGKDGASANIAVKDGAEGVDGTNGKDGLPG
                     ENGKTRIVYETKDKDGKTVTEQVATLNDGLIFSGNNEDVKNRQKLNTEVKVKGEGVDK
                     TASENFKSASGNINVKANGTDTLEVQLAKAIDLTEDGSVTTGDTTVNNNGLTIKDGPS
                     VTKGGIDAKGTKITNVKDGDVTATSKDVVSGSQLYNAMQNTGWYLTVDGNVAETSEKG
                     AQRVNNNGKVAVSGGKNIVVSRKGSTVEVATSSNLEFDSVKVGGTTISSTVAKDGVNE
                     LNIAGSKNAQTRITNVAPGVKGTDAVNVNQLKGAENRLNNRISNVDKDLRAGIAGALA
                     AGNLYHVTQPGKSMVSAGVGAYRGQGAIAVGYSRLSDNGKVGIKFSVNSNSRGDTGAA
                     ASVGYQW"
BASE COUNT         8961 a         6819 c         5989 g         8866 t
ORIGIN      
        1 atggcaatgt caaatatcgg tttagataaa gaaatcgcaa aaaaattagc agatgagtta
       61 aatggtttat tagctactta ccaagtgttt tacactaatg tacgtggcta ccattggaat
      121 gtacgtggtg tgaacttctt tgaattacat gcaaaatttg aagaaatcta cgatgattta
      181 gtgacaaaag tagatgaaat tgcagaacgt attttaacct taggtcacac acctcaaaat
      241 gcgttcagcc aatatttaac caagtcacaa attcaagaac atattggtgt ttcagctgca
      301 caagaatgtt tacgtggtac tttaaatggt ttcaaaacat tactgggaca acaacgtgaa
      361 attcttgctc tagcaaatga tgcaaacgat gaaggtactg cttctcaaat gagtgattac
      421 atcaaagaac aagaaaaatt agtatggatg ttcactgcag cttgtgctga atgttcagac
      481 tacgcacaag gttgttcttg taactaagtt gcaataatat aattaacccc cgataatgaa
      541 agattatcgg gggttacttt ttcagatagc tatgtcgcaa ggatttcaat ttaaacagtt
      601 ttttattcgg cacgacagat gtgcaatgaa agtcaataca gatggtattc tattgggagc
      661 gattgctcac ataaaagatt gtcagaatat tttagatctg ggtataggtt ctggtttagt
      721 agcacttatg cttgctcaga gaacagatga ttgttgtcac attactgcgt tggaacttga
      781 accaaatgcc taccaacaag cggtcgaaaa tgcccaaaat tctgcatggg caaatcggat
      841 ttccgttttg caaggtgatg tgatgcagca ggcatttgaa cagaaatttg acttgattgt
      901 tagtaaccca ccttattttg cagattcact tgcagctcga accacagaga gagatttagc
      961 tcgctcaatt agccattaca gccacttgaa ttggctggca aaagcaaaac catggttagc
     1021 agagaacggg aaaattacac tgattttacc tatagcagct gcagaaaaat tagttgacca
     1081 aagtgaacaa attggattgt attgtgttga acaatggtta atttttacca agagcggcaa
     1141 attggctaaa cgcagtatag tgagttttag tttaaacaag caaaagcgtg aacataaaga
     1201 gctgatcatc tatgatctag ataattgtta cactactgag tttaaaagac ttacccaaga
     1261 tttttatttg aatttttaat ttactccccg ggttagtgtt ttccacaaat cttcttcagc
     1321 tacgatgatc tagccttaag ctaaaaagca gattaccacc caagataatc cgctttttag
     1381 acttagctat tatgccaaac ttgctaccat taccgcttta atagtgtgca ttcgattttc
     1441 tgcttgctcg aatgccacat tcattggcga ttcaaacacc tcttcggtta cttcaatgcc
     1501 gtttgccagt gccggatatt tttcggcgat ctctttaccg actttagttt cactgttgtg
     1561 gaacgccggt aagcagtgca taaatttcac tttcgggttg tcggttgctt gcattaattc
     1621 aggcgttact cggtaaggca ttaataaatc tatacgttca gtccagctct ctagcggttc
     1681 acccattgaa acccaaacat cagtatgcac aaaatcgaca cctttaattg cagtctcaat
     1741 atcttcggtt accgtcattc ttgcccccga ttcagctgca aatttttcac acattttcac
     1801 gaatgcatct tccggtaata aggctttcgg ggcacaaatt cgcacgtcca tccccaattt
     1861 cgccccaatc aacaggagtg aattacccat attattgcga gcatcgccga tatagacata
     1921 actgatttgg ctaagcggtt tttcgcaatt ttcgatcatc gttagcacgt cagccaacat
     1981 ttgggttggg tggaattcat cggttaagcc gttaaacacc ggcacgccgg cataatcggc
     2041 aagctcttgt actaccgatt gtttaaagcc gcgatattga atcgcatcat acattctgcc
     2101 tagcactcgg gcggtatctt tcattgattc tttatgcccg atttgcgagg agttcgggtc
     2161 aatataggta acgtgagccc cttgatcgta agctgctact tcaaaggcac aacgagtacg
     2221 ggtcgaggtt ttctcaaaaa ttaaggcaat atttttgccc tttaattttt gctgctcagt
     2281 gccggcatat ttcgcccgtt ttaaatctct tgctaaatcc aacaaaaagc gaatttcacg
     2341 ctcagtgtgg tttactaaac tgagtaaatg tctgtttttt aagttaaatg ccattttgtt
     2401 tctccctgta aacattaaaa tttattttat gcaaaataat tgcataaaaa ttcacttata
     2461 gcaaacagaa tttgcttacc ctcattcggg taaataaaac tcgcctttgc cgactaaaat
     2521 aacctctccg ccaacaaaaa tcttcccgtt ttgatcgact tttaataaca ggcgattcgg
     2581 ccgttgaatt tcatcacctt gtgagatctg aagctggatt ggtattttgc cttgtgcaat
     2641 gtgccaaccg cctaaatttg ccgctgccga accggtgccg gggtcttcga caatcgaacc
     2701 ttgcgattga aaaaacagtc gcactttcgc ctcatttccc tcacgacacc aaacatatac
     2761 actgtctttc aaaaatgctt tttcagccag atttgcattt attttgcact tttcgaccgc
     2821 ttgttgagaa gctaactcaa ccaataactg ctccacgccg gtgtttacat aacaaggctc
     2881 ggacgcaata tccgcaacat tcagccccaa tattgaggca cattctgcac ggcttagcgg
     2941 tgtgttttcc aggttcacac cattggttaa agcaaaagta gtcacattat gttgatgttg
     3001 aatcgctacc aatccggcat tagtttgcaa gcgataggtt gttggaaaat caaaggcgga
     3061 atgcaacaca aaagccgctc caacagttgg gtggccggcg aacggcattt cataatcagg
     3121 cgtaaaaatt ttgagttttt tgaccgcttg tgaatcggtg gaagattgaa taaataccac
     3181 ttcagaaagg ttaaattggc gagcaataag ttgcatttgt aagtcggtta atccgtccgc
     3241 ttcataaaat actgcaagcg ggttgccgcc aaaatggctt gttgcaaaca cattcaccag
     3301 caaataagga tagctctgca tttatcactc cttacataaa cttaaagcca cattgggcga
     3361 aaattctacc attttggtgg cgaatcgtaa aattggaaaa tttatcggta tccctcttta
     3421 gagttaacta tttttgattt atctcaaagt tttaaaaaaa agattaggtc atacttcttt
     3481 ctagtgatta ttttttaatt tgaggttctt atgctttatg cagaattttt acttttatta
     3541 gcctttttat atgcaggtag ccgttacggt ggcatcggtt taggtgtggt ttccggcatc
     3601 ggcttatttg ttgaagtgtt cttcttagga atgccgcttt ccgctccgcc aattagcgtg
     3661 atgctcgtga ttttggctgt agttacttgt gcctccattc tagaagccgc tggcggtttg
     3721 aaatttatgt tgcaagttgc cgaacgcatt ttgcgtagca acccaaaacg tattaccttt
     3781 cttggcccac ttgtcactta tctgatgacc ttaatgctcg gcacagggca ttcggtttac
     3841 tctattatgc cgattatcgg tgatattgcc ttaaaaaata aaattcgccc ggaacgcccg
     3901 atggcagcag cctctgttgc ttcacaatta ggtattaccg gtagcccact ttctgctgca
     3961 gttgcctatt acttaaccga aatcgttaaa ttaccgggct ttgaaggggt gactttattg
     4021 aatgtagtcg gcgtaaccat caccgcaacc ttctgtggtg tgattgcgat gtcattatat
     4081 agcttacgtc gtggtaaaga gttggaagac gatcctgagt atcaacgccg tatgcaagac
     4141 cctgagctac gcaaacaaat cgagcaaacg agtgcaacgt ctttagacga aaaactaccg
     4201 gcaagtgcga aaaactcggt ttatctgttc ctagccgcta ttgcaaccat tgtgattatt
     4261 gcaatgattc cggctattaa accaacggtt gctgctacag gaaaagttgc cggtatggat
     4321 caaatcattc aaatcgtgat gctaactttc gggggtttaa tcttaatttt aactaaaacc
     4381 gacccgaaaa aagtaccaaa cggcatcgtt ttcaaatccg gtatggtagc aaccattgcg
     4441 attttcggga ttgcttggat gagtgatact tacttcaccc atgcaatgcc agcgttcaaa
     4501 gaaggggtaa cagaaatggt tcgagcccaa ccttggacat tcgccttcgc cttgtttgcg
     4561 gtatctgtag tagtaaacag ccaagccgta accgcaaaaa tgttattacc ggtaggcatt
     4621 gcaatgggct tgcctgctcc attattagtt ggtttaatgc cggcaactta tgcttacttc
     4681 tttattccga attatccgtc tgatatcgca accgttaact ttgacgtaac cggtacaact
     4741 aaaatcggta aatattactt caaccacagc tttatggctc cgggtttagt tggcgtaatt
     4801 actgcctgta ttgtcggtat cgccgttgca aatgtgctaa tttaatttta acaaaaaaac
     4861 aagcggtcag attaagtaaa ttttttacca aatctgaccg cttgattatt tactgcaaaa
     4921 ccaattaggc tttgttaaag agttttgcat ctaacgagta ttttccgcca ccgataaaaa
     4981 tataggttaa gaataatacc gaatacacgc ctgctaattc accgccgttt aataaaggta
     5041 atagcacatt gccttgagct ccgtgagcaa taaagaacgc gtatgccatc atacctgaaa
     5101 ggataaacgc tgtttggcgg gtaaatagac ctaaaataaa gaaaattccg cccacaattt
     5161 ccaaaatacc gcctacacca taaatggagg caaggggtac actgccgttt ccgttggtca
     5221 tcgacattgg aaattcaaaa aatttcgctg tgccgtgtaa taaaaacata taaccggcaa
     5281 caacacgggt gattaaaaac gctaaaggtt gtaaatttgt taaagtagag ttcatttgct
     5341 ttccttaaaa taaattgtga tataaaggtc aattgattga ggcaggcatt ctattttaaa
     5401 aacctatact tcacaatcca gccgtcatga aatagattat ttaccattaa taaacaatta
     5461 ggctctcgct aacacccaaa cctgaatttc tactactcca gctttgagta actcggcaca
     5521 aattacattt aaggtggaac ctgtggtgag cacatcatca acaatcgcca ctcgtttata
     5581 ggcttttaac ggttgataga aaaatgcccc acgcagattt ttccgccgtt cagcagcggt
     5641 caattctctt tgtgagacgg ttgctctcac acgttgtaaa ctctgggtat ccagcggaat
     5701 ctgtaaccac ttcgataacc aatcacacaa taattcgctt tgattaaacc ctcttttcca
     5761 atgtctgtgc caaaaaagtg gtacaggcat aatcacttca ggcaagctca gaacctgttc
     5821 cctttgagct tgtttgattg ccagcagcaa ttgtcgggca agggcttgat cccaccaata
     5881 ttgctgctgg aacttaaatt gatgtaccca atgtgaaagt ggcgctcggt attcatttac
     5941 cctcactaat ttatgccact tcggttcatt tttcaaacaa tagccacaag cgtttcgaaa
     6001 ctccaccgca ctcattccac aatgacgaca ataaggggtt ggttttagca atttttggca
     6061 atggctgcaa atgccttgca cgccaatagc gagtggatga ttacaatgaa agcaacggaa
     6121 gccgaataaa ttcacatttc ctccttttat ttgcagatta tcaaatttag ccttattttt
     6181 tccggctatt tttgtgacat cgctcgaaaa aagagtaaaa tctcattatc agtaaataaa
     6241 aaggaaaccg agatgaaatc cctccaaaaa ccgatcaaaa ttgtcttttt cgatattgat
     6301 gacaccctct atgtaaaaca taaagcctat attccaaaat caattaccga gcaggtatta
     6361 cctcgtttaa aagccaaagg cattattccg gccattgcca ccggcagaaa tcacggctgt
     6421 tttcctgaag ctctcaaacc ttatttaaac cctgaaatcg gttttgagct gtttgttacc
     6481 attaacgggc aatataattt ctataaagat caaataatta gtgattattc gttaagccgt
     6541 gagcaaattg aacgtattat cgaaaaagcg aatgctttgg gtattctgta tgcctttatt
     6601 acgccaatga cgattgcagt ttccgaaacc aatccgattg tgcacgaagc ggttttaccg
     6661 atcacaccga attatttgat cgatccacac tactacgaaa aagagaaaat tgtgcaaatg
     6721 ttactgttct acaccgaaga gcagaaacaa gcggtcgaaa atagtggcat ttttgcaaat
     6781 gatttaaaag aggctcgctg gcaccccaat gcggtagata ttctgcgaaa agaaaattcg
     6841 aaagctcgtg gcattcaaga tgtattagca accttgaata ttgagattga aagtgcgatg
     6901 gcatttggcg atggtattaa cgacttggaa atgctcccga ccgtaggtgt tggtgtggca
     6961 atgggtaatg gcgtgccgga attaaaagcg gtggcagatt tcatcaccaa gccgcttgag
     7021 gaagacggca ttctatacgc tcttgaaact cttgaggtga tttaaaagca agcggttgta
     7081 agtttttctc catttacaac cgcttgtagt ttctaattac gcctaaatag cttatcgcct
     7141 gcaatcgcta aaatcgcccc actgacgacc accaacgccc caagataact gatccaattc
     7201 atatccggct tggcaaaaat atgcggataa aaatagtagc taaggttgga aaagatcatc
     7261 gtaaaaatcg gcaacatcgt ggttacaatg ctaacctttg aagtatccca atgattcaac
     7321 gcctcaccgt atgaaccgta gccaattaag gtgttcaaca gcaataaata aagcaacccc
     7381 acagaaaacc atcctcaaga ttgcctaact gtgccggtga ggcaaacggt aacatcagca
     7441 gagaacagcc gatgtaaata ataaacagca cttgctgaga gttaaatttc gctaataata
     7501 atttttgagc cacgccgtat agcacccaaa tcaagctggc tccggcactc aataacactc
     7561 cgagagcgta ggtgttgagc tgtaaaattt cagcaaattt atcgttaaaa aatgcgacaa
     7621 gccctgcaat caataacaca aatccaatct tttgaaacaa gccgaacttt tccttaaaca
     7681 ataatacgcc tagtagaatc atcgaaaatg gagctaactg ccacaatact tggttaatgg
     7741 tgggcgaaac atagtgtaga gcctctgcaa acaaaaagaa atttgccgac agaccacaca
     7801 cccctaacaa aattaaaccg agttcttttt tgctacaagc ggtcaatttg ggtaaacgtt
     7861 ttgcaaatcc tagaatcagc aatagcccta ctgatgccac aacgaaccta acccaaacta
     7921 aagtttgggc atctatcact ttcaatactt gctgggcggc aatcggtagc gttccccagg
     7981 tcattgctgc ggttaatgca agtgaaaagc caagtaaggg gcgttgtttc atcgtggaaa
     8041 ttcctttttc tattctatgt ttctatattt tagaaagatt gagatacaaa aaaaccccgc
     8101 cattggcgag gtctcttatt gattttgaaa tgattagtca gcaatgatgc ttacatattt
     8161 acggcttttc tcgcctttca cttcaaattt aactttaccg tcagcagttg caaataaagt
     8221 gtggtcttta cccataccta catttgaacc tgcgtggaat ttagtaccac gttgacgaac
     8281 gataatgcta cctgctaata cagattcacc accgaaacgt ttaacaccaa ggcgtttagc
     8341 ttcagaatca cgaccgttac gagttgaacc accagctttt ttagttgcca tcttctagat
     8401 ctcctctgaa attatgcttg aatcccagtg attttcactt ctgtgaacca ctgacgatga
     8461 ccttgttgtt tacggctgtg tttacgacga cggaacttaa cgattttaac tttctcgcca
     8521 cgaccttgtg ctacaacttc agccactact tttgcacctg ctacaaccgg tgcaccgatt
     8581 ttaacatctt caccgttaac gaccattaac actgagtcaa attcaacttt ctcaccagtt
     8641 gcaagttcaa gtttttctaa acgaactact tgaccttcac ttactcggtg ttgtttgccg
     8701 ccactttgga aaactgcgta catatttact ccgctatgtg ccaactgctt ttgcttttag
     8761 gcactaaatt aattcataaa aatagggttg caattctacg gaaaaagatt cgaaagagca
     8821 agagcgattt tgagaatttt ttgaaatttg caaaaaatgg taaaaatact accgcttgtt
     8881 tcaactgcga ctaaaaaaca atagactgct ccgattttac aacaaaatca taattctttt
     8941 ttgaacacag gctaaattaa ggtagaatct actcaatttt cgtcttactt tatggattcg
     9001 atggctgtgc aacttttttc tttagaacaa attcaagccc ttgcgaatga agatatgcaa
     9061 gcggtaaatg ccgaaatttt agctcaactt aattccgaag tgctactgat taaccagctc
     9121 ggacattata tcatcgcagg cggtgggaaa cgtattcgcc cgttaattgc ggtgcttgcg
     9181 gctcgtgcct tgggttatcg tggtaaaaag catatcacgg cggctgcttt tattgagttt
     9241 gtgcatactg ctacactttt gcacgatgat gtagtcgatg aatccgatat gcgtcgtggc
     9301 agaccaaccg caaacgccca ttttggcaat gcggctagtg tattggtagg ggatttcatc
     9361 tatacccgtt cgttccagat gatgacggat ttagactctc tgcgtgtgtt aaaagtgatg
     9421 tctgccgcca ccaatgcgtt ggcagaaggg gaagttcagc aattaatgaa cgtgaacgac
     9481 ccaaacacca ctgaagcgaa ctatatgcgg gtcatttaca ataaaaccgc ccgcttgttt
     9541 gaagccgcca ctcaatgcgt ggcgattgcg gctgatgctt ctgaggaaat tgaaaccgca
     9601 ttaaaaaatt acggttgcta cttaggcacg gcattccagc tgattgacga tattttagac
     9661 tactccgctc aaagcgaaag tttaggcaaa aacgtaggcg atgactttgt ggaaggtaag
     9721 ccaaccttgc cattgctcca cgcaatgcac gctgccgaca aagcaggcaa aactactcaa
     9781 gcagagctga ttcgcaatgc tatcgaaaac ggcggcgaat tggaacaaat tccacaagta
     9841 ttggcaatta tgcaagaaca tcaatctctg gattatgcca tgcaaaaagc ccgtgaagaa
     9901 gcccaaaaag cggtggattc attaggggtt ttaccggaaa gcgagtacaa acaagccttg
     9961 gtttcattgg cgtatttatc ggtggatcgc tcttattaat ttgcaaaaaa tcatataaat
    10021 ttaaccactt gtaggggcaa atgatatttg ccccataacc tataattctt ttgggcaaat
    10081 gttatttgcc ccaacataac aatgactgaa caaaaccaac gaccccaaga acatattgaa
    10141 agcgtacgag cgagacgccg tgctcaaaat cagaaaaaag gcccgaatgc cccgtttgtg
    10201 cgtgagaaat taacgctgcc aaacggacat aacaaattac tgctgcactc ttgctgtgcc
    10261 ccttgctcgg gtgaggtaat ggaggctatt cacgcctccg gcattgagtt tacgatctat
    10321 ttttataacc cgaacattca cccgctgaaa gagtatttga tccgcaagga agagaatatt
    10381 cgctttgccg aaaagtgggg tattccgttt atcgatttag acgatgacta cgaaaacgac
    10441 cgcaaagagt ggttcaaaaa agccaaagga atggaatggg agccggaacg aggcattcgt
    10501 tgcacaatgt gctttgatat gcggtttgaa aaagcagcgg aatacgctca caacaacggt
    10561 ttccctgtat ttaccagttg cttaggcatt tcccgatgga aagatatgaa ccaaatcaac
    10621 gactgtggtc accgtgcagc agccaaattt gatgacgtgg tttactggga ctacaactgg
    10681 cgtaaaggcg gcggctcaca acgaatgatc gaaatcagca aacgtgaacg tttctaccag
    10741 caagaatact gcggttgcgt ctattcgtta agagatagca acaaatggcg gttggaaaca
    10801 gggcgtcagc ggattgaaat cggtaagctc tattactcac ccgattaaat gttacttttc
    10861 tttgcttcgc caaagaaaag taaccaaaag aaaggcgacc cgaacttcgc ttagttacga
    10921 tttccttaac ggaaaatttg taaactcgct acgctcaaac agtacaaatt ttcctagaaa
    10981 tcgcaagtcg ctcagacggg acaagcggta cattattcaa aattttttac aaaatatagt
    11041 gatgtactct tcccttctga accgcccgaa cgtgtttgaa ttggtaggaa aatttactct
    11101 gagcgaagcg aatgtaaatt ttccgtgaaa ccaattcaaa ctaagtgagg ataagcggtg
    11161 aagtaggggt gtttctttgg ttactttctt tgcacatgca aagaaagtaa cgaaaactca
    11221 gatatagatt tcaacttaaa aatttacaga aggaataata acaaatgtca aaattcgcta
    11281 tggttttccc cggtcaaggc tcacaagcgg ttggaatgct tgccgacctt gcgccacaat
    11341 atccaatcgt ggaagaaacc ttcaaacaag caagtgatgt gcttggctat gacttatggg
    11401 atttagtgca aaacggtact gccgaagagt tagggcaaac ccaccgcact caacctgcgt
    11461 tgcttgcctc aagcgtggca cttttccgca tttggcaaca aaaattccct gagcaaaaac
    11521 cagccgtgat ggcagggcat agtttgggtg aatactcagc gttggtgtgt gccggtgtgt
    11581 tggatttcca agatgcgatt aaattggtcg agttgcgtgg tcgtgcaatg caagaagccg
    11641 tgccggcagg cagcggtgcg atgtttgcga ttatcggttt agataacgaa agcattatta
    11701 aagcgtgcga gcaagcagca agcgagaccg gtgaaattgt ctctgcggta aactttaaca
    11761 gcccggggca agttgtgatt gccggcacaa aagcagcggc agaaaaagca ggagaattgt
    11821 gtaaagccgc aggtgcaaaa cgtgcgttac cattagcggt gagcgtacct tcacactgtg
    11881 ctttaatgaa accggcggca gaaaaattag ccgaagcctt gcaaaatatt gagctaaatc
    11941 aaccgcttgt ccctgttatc aacaacgtgg atgtggcagt ggaaacagat gccgatacca
    12001 ttcgtaatgc acttgttcgc caactttaca gccctgttcg ttggacggaa accgttgaaa
    12061 aaatggcaca agatggcatc actactttat atgaaatcgg gccaaacaaa gtcctaaccg
    12121 gtttagcagg tcgtattgta aaagaattat cagccaaagc ggtaaatgat gttgccagct
    12181 ttgaggcggt tgaggcttaa ttttcgggag cgtaaaatga gtaaagaaac cctatttatg
    12241 ctaataagtg cattgattgc cttagtgatt ttacctttag cttatactgt tggtatcgct
    12301 aaagaaacat taggcggaaa tatgggaatg ttatccattg ctgccggttg ctcattttta
    12361 gcctattttt taagtctaaa cccgaaaatt cgccacgcct ttatcggagg ttcagctatt
    12421 acagctgctg ctattcaagc ttgggtatta tatggtgtgc tattaagcga aaatgacccc
    12481 aaaagtgcgg tcgttttatt tcaaatttat ctgtttagta gtttagggcc actgtttttt
    12541 tcagctattt gggcatttac tcgcccacgt tggatttacc ctaaacaagg tagtgcggtg
    12601 aaatatgcct tatttggtgg cttaacgacc gtgataaact acttgattac cctttttatt
    12661 ttttatattc tgacgttata acgtcatact aaggagaatt tatgagcaaa atcgcattag
    12721 ttacaggggc aacccgtgga atcggcaaag cgattgccga agaattggta gcaaaaggct
    12781 acatcgtagt cggcaccgca acctctgaaa aaggggcgga atctatttca gcttatttag
    12841 gcgagaacgg caaaggctta gtgctaaatg ttgccgatgc agagtcgatt gagagcgtat
    12901 taaagcagat caaagagacc tttggcgatg tggacgtgtt agtcaataac gccggcatta
    12961 cccgtgacgg cttattaatg cgtatgaaag atgaggattg gttcgacatc attcaaacta
    13021 acttaacttc ggtttatcgt ttatccaaag cggtattacg cccgatgatg aaaaaaggcg
    13081 gacgcattat cacgatcggt tctgtggtcg gctcaatggg caacccgggg caaaccaact
    13141 actgtgctgc caaagcaggc ttagttggtt tttctaaatc tttagcgaaa gaagtagcaa
    13201 gccgcggcat tacggtaaac gtggttgctc cgggctttat cgccactgat atgaccgatg
    13261 agctaaccga agatcagaaa aatgcgattt taagccaaat tcctgccggt gaactcggtt
    13321 ctccacaaga tattgccaaa gcagtcgctt tcttagccag cgatgatgcc cgttatatca
    13381 acggtgaaac cattcacgtt aatggcggtt tatatatgag ctaatccgct acaagcggtc
    13441 ttttttcaac cgagctttgt aaattcagag ttcggttttg ttatttgtta ttttgtgtta
    13501 tcacctgctt tataggtata ggtgaaaaag tgtgaatatg ttatgactag aaatacatta
    13561 gtagtaggct ttttattgtt tgctattttc tttggtgccg gcaatctgat tttcccacca
    13621 aaattaggtt atgaaagtag tacagaattt ttctcagcca tttcaggctt tgttttaact
    13681 ggagtagggc ttcctctact cggtattatc gtcagtgcat tttataatgg aggctataaa
    13741 tctgcattag acaaaatcca cccttggttt tctttagcat tcctaacttc tatctattta
    13801 gcgatcggtc cattctttgc cggtccgcgc acggcagcaa ctgcctatga aatggcgata
    13861 atgccgtttt taggggattc cagccaagtg tcaatgttaa tttttacctt aatttacttt
    13921 gcctttaccc tatggttagc gctaaatcca aataaaatgg ttgatcgcat tggtgcaatt
    13981 cttaccccga tcttgcttat aaccatcatt ggattagtta ttcgagccgg ctttatttta
    14041 gataccgatc cacaaatcac tacgcctaat acgaatgaac aatcttactt ttttaaaggt
    14101 atggttgatg gctatctaac tatggatgca cttgcttcgt tagcctattc ggtaattgta
    14161 ttaaatgcta ttcgtgggaa aggggtaagc caagccgcat tacaacgcca aacagtttct
    14221 gccggcttag ttgcagcagt tgctctagct gtaatttata tttcattggg ttggattggt
    14281 aataatatgc caattagtgc aaacacactt tcgatgttat cagaaagaaa attggatcta
    14341 ggtacttaca ttcttaacac tgtgactacc caagccttcg gtgaactcgg acgtagtgtc
    14401 ttaggagtga ttgtttcact tgcctgttta accactgctg tcggtttagc cgtatcagtc
    14461 agtgaatact ttaatgaaat tttcccgaaa atttcatata aagtttatgc tatcttattt
    14521 actgtgatta gttttactgt tgctaaccaa ggattaaaag aagttattag caaatccatt
    14581 ccggtattat tagttctcta cccaatagca atgactgtca ttttaatgtt gctgattaat
    14641 ttagtgatta aacttccgtt gtctgcacaa cgtctatcac tcctattagt gacaattgta
    14701 gcgatagctt cagttgccgg tgtcgggttt accgaaaact tgcctctaaa atcctactcg
    14761 atggaatggc tacctttcgc tatcattgga gctattattg gagcaattat ccacccgctt
    14821 accggtcgaa agcataaata aagtaaaggc agtgagcatt cactgcctct tttttaggag
    14881 agaataatgc ctgaattacc cgaagttgaa accagcgttc gtggtgtatc gccctatttg
    14941 gttgggcaaa ctattgaaca aatcatcgtt cgtcagccaa agttacgttg gacggtgagt
    15001 cctgaattaa gccaaatggc aggggcaaaa attaccgcag tagaaagacg tgccaaatat
    15061 ctgattatcc gcaccgacaa aggcgatatt ttggtgcatc tgggaatgtc cggctcgctc
    15121 gggattttgc aagaacgtca acaaaaagaa attggcaaac acgaccacgt cgatcttatt
    15181 acccaaaacg gcacaatttt acgctataac gaccctcgca aattcggctg ttggctatgg
    15241 gcagaaaaag cagaagatca cgaactgttg cgtaaactcg ggcctgaacc gctttcaaac
    15301 gatttcacag cagattactt atttgcaaaa agccgcaaaa aaacgaccgc ttgtaaaacc
    15361 tttattatga ccaatgaagt ggttgttggg gtggggaata tctatgcgtg cgaaagttta
    15421 tttatggcag gcattcaccc tgagcttgca gcacaaaacc tgactaaaaa acagtgcgaa
    15481 cgtttagtaa aaaccatcaa agaagtgctg actaaagcga ttattcaagg cggcacaaca
    15541 ctgaaagatt ttatccaacc tgacggcaaa ccaggctatt ttgctcaagt gttgcaagtg
    15601 tatggaagaa aaggggaaac ctgtaatgac tgcggaaagc cgattgaaac taaagtaatc
    15661 gggcaacgta atacctattt ttgcccgaag tgtcagagat tgccgaagta atctaataat
    15721 aaactctctc cccctgaggg agagagacag cttgttgaaa cgttaagtga aacaagcaga
    15781 gagagggtaa aacctaaacc tgcaaccaaa aggtaacagg cccgtcattt tgtaggctga
    15841 cttgcatatc ggctgcaaat tgcccggttt gggtatgaat cttagtggcg gcttgttgat
    15901 gaaagtaggc atacaaacgt tcggcatcaa ccgggcttgc tccttttgag aaactaggac
    15961 gcaagccttt attggtatcc gccgcaaggg taaactgtga aaccactaac aaactgccac
    16021 ctgcttgctg tacgtttaag ttcattttcc cctcgctatc cgaaaacacc cgataattca
    16081 gcactttttc cagtagctta tctgctttcg cttcatcatc gtctttttcc acaccgagca
    16141 gcaccaacaa accgcttgca atttcgccaa cgacttgccc ttcaacctcc acttttgcga
    16201 atttaacccg ctgaattaag cctatcatta atgctcccct tgtctgtttc catttcgtct
    16261 aaaaccgccg caaattgccc gccaagtaat accacctgcc aacttaactg aatccataac
    16321 agcataatcg gtaacaccgc taatgctcca taaattgcct gataagacgg gaaggcagta
    16381 atataccaaa taaaggcttt cttccctaaa gtaaagaaaa tcgctgccat taatgccccg
    16441 atagcagcgt gttgaaattt tacctttcta attggaataa atttatacac taaggtaaaa
    16501 agtagccaaa ttagcaaaaa cggcatcaat tctaataaat gctgcccgag cgataacgct
    16561 ccatttccat taaaaataga aagcgacatt acataggtgc taatcgcaat gctagcaccg
    16621 gcaagcagcg ggccaaacag caaaatgaga aagtaaagca agaaagagaa ccacatcgga
    16681 cgctgacgat tatcgtgcca aatggtattc aatgcctcat caatactctt aatcagcata
    16741 atagtaacca caaataagcc gataaaactt accagcccca tttgtttggc attactgaca
    16801 aacaactcaa tgtattccga caccatctcg ctcgcactcg gggcaaagtt gtcataaatg
    16861 aacgctttta actgctcgtt tgcttcgtgg aaaatcggaa aaaaggtaaa aatggaaaac
    16921 agcacgacaa taaacggcac tatcgccagc attgtgctat aagtgagata accggctgaa
    16981 atcgcaatgt tattttcatt gtaacgcttg gcaaagagct taataaatct ccacagtcga
    17041 tttaacatct taacctctca ccaaataatc gccttcacac acccatttgt aggtggttaa
    17101 ggcttctaat cccatcgggc ctcgtgcgtg taatttctgc gtgctaactg ccacttctgc
    17161 ccctaaacca aactcaccac catcggtaaa acgggtgctg gcattaatat aaaccgccgc
    17221 ggcatcaacc tgttgtacaa attgacgggc aagttgataa tcggaggtta aaatcccctc
    17281 tgaatgctgc gaaccataat ggcggatatg ctctaccgct tgttgcaggt cattcaccac
    17341 caccacgtta agatcaagcg ataaccactc ttggctcaat tttgcttgat caagcggttc
    17401 aattccttca attttttgca aatcgttact gtgaatagta acgccaagct gttgcatttt
    17461 ggcgaccaat ttcggcaaaa attccaccgc aatcgctttt tccaccaaca gcgtttccag
    17521 cgtattgcaa gtgcttgggc gttgcgtttt ggcattagcg atgacctcta gagatttctc
    17581 ctgatccgct gttttttcca caaacagatg acaaacccca atccccccca caatcaccgg
    17641 aatggtcgaa ttttctttac agaattgatg taaacctgca ccgcctcgag ggatcaccat
    17701 atcaatgtag cgatctagct tcaatagttc caataataag gctcgatccg gatccgtcac
    17761 cgcttgcact gccaatttcg gcaagccggc tttttctaac gcatcttgca ctacatcaac
    17821 caacacagca ttggtaaatt tggtctcttt accgccacgc aaaatcactg cattgccggt
    17881 ttttaggcat aatgatgcca catcaatggt cacattcggg cgagcttcgt aaatggttaa
    17941 aatcaccccg agcggcacac gctggcgttc gattttcaaa ccgctgtcta acacgccacc
    18001 gtccatcacc tgccccaccg gatccgctaa tttggcaaca tttcgcacat cgttagcaat
    18061 gtcttttagc cgatcttcat tcaataataa gcggtcaata atcgccaatg aaatcccttg
    18121 tgcttgagca aattcaatat ctttggcatt agcgtataaa atttcttctg cacgttgctc
    18181 aaggctatcg gcaatcgtga gtaaggcttg gtttttctgt aggttgccaa attgagccag
    18241 ctcaaaacta gcttgtttgg cttgctgggc aagttctatc atctgcataa attaggtctc
    18301 atttaatcaa tattctccat aatctaacac gttcttttat gtgaagaaat atgcaaaagc
    18361 caagaaaatt ggataaaatg ggggaatttt aaaacattac gcaattcccc tctccctgat
    18421 ttttctcctg aacggagaaa aatctatccc tctcctacaa ggggagaggg tagaatttaa
    18481 ctctctcccc ttgtgggaga gagaccgcct acagattcgt tcagaatctg taggcagaga
    18541 gaggggtaaa aacagataaa acttaaacaa aatgataaac actaccccta aacagctaat
    18601 ccacattctt ccgcctcaac tggcaaacca aattgctgcc ggcgaggtgg tggaacgccc
    18661 tgcgtctgtg gtaaaggagc tagtggaaaa cagtttagat gccggagcca atactattca
    18721 aatcgacatt gaaaaaggcg gctctcagct tatccgcatt cgagataacg gttgtggtat
    18781 cagcaagcaa gatttaccgc tggcacttgc tcgccacgct acgagcaaaa tcagcagctt
    18841 ggaagattta gaagccattt taagtttagg ctttcggggc gaagcattgg caagtatcag
    18901 ctcggtttca cgtttaacac tgacctctcg taccgcagag caaaccgaag catggcaagc
    18961 ctatgcacaa gggcgggaaa tggcggtgga aattcagcct gcctcacacc cgattggcac
    19021 aaccattgaa gtagcaaatc tgttttttaa cacaccggca cggcgtaaat ttctacgcac
    19081 cgataaaacc gaatttgccc atattgacga ggtggttcgc cgcattgccc ttgccaagcc
    19141 gaatatcagt ttcagcttaa gccataatgg taaaatcgtc cgccaatatc gcaaagtgca
    19201 agacaattcg gtagagcagc aacaaaaacg ggttgcagcc atttgcggtg atgagtttat
    19261 tcaacattca acttatattg acaggcaaca cggggatctg cacctacacg gctgggttgg
    19321 ctcaccggct cttgcccgtc tgcaaaacga cctttgctac agctatgtga acgggcgaat
    19381 gatgcgggat aaaaccatca atcacgccat tcgccaagcc tacggcgaca gcattgcaag
    19441 tggttactat ccggcttttg tgatcttttt ggatttagat ccgacaatgg ttgatgtaaa
    19501 cgttcacccg gctaaacacg aggtgcgctt tcatcaagga agactggtac acgactttat
    19561 tttgcaaggc gtactcaaca gcctgcaaca aacccaacct acgcttgaac tgcgaaatga
    19621 agtgaacgag ccgttaccga gctatgttca agacactaac cgccaagctg cggggcaaaa
    19681 tatttttgtg tcgcaaaccg ctccacaagc ggccgaattt acgcaaaaaa atgcaagtcg
    19741 atcaagctat acgcctaaat ttgaacgaag caacagtgtg agttcgtccg ctcaaaaatg
    19801 gtataaggaa ttggttggtg gcgatttgca ccaaacaacg ccaactatca aaacgcaaag
    19861 cacgcttgtt gagccaaaaa cagaacccca aactgaacat aaaacagaag ccgtttcgca
    19921 aaaaattacg caaattgcac cgcttgcaag ccaccattca caagccttag cgattgtaaa
    19981 aaaccaagcg gtgttaatta aagaagagga aaatttttac ctgcttccac tggcaacatt
    20041 agccgagctt aaactcaagc tacaactgga aaaagggcaa tctcaagcgt tgttgatccc
    20101 actgaatctc agtttagatc aacaacaaac cgaacgctgg caacaaacca aagaagaact
    20161 aactaagctt ggcttttcga tcagcgaaaa acagtggcaa gcccaaacac ggctcacagt
    20221 gctttccgta ccacaggctg tcagagaaca aaacctgcaa cagcttttat ttgctctgtt
    20281 caaccaaaca caagcggtca atttagccga attttttgca aaaaaatgcg aaaaacccac
    20341 cgcttgtacg ctaagtgacg tgattgctct actctcagaa attgagcttt atgccaatgg
    20401 gaaaaaagag ctggagggaa taaggaagga agtggatttt tccaagtttt tatagtctaa
    20461 agggcaatac cctttagcca aataaatgag agtggctgcc aattcgcagc agctctagct
    20521 tatcatcttc cacttttcga tagataagaa ccaaatcagg ttggatatgg caatccctaa
    20581 agcctttcca ttcgccggtt aaagcgtgat cgcagtattt ctcaggtaat ggcttgtcat
    20641 taatcagaaa atacaacgcc tcaattaatg aagaggataa agactcaacc gcacattttt
    20701 tatagtcacg tttaaaagca ttactatact caatctctcg cattgagttg ctccattaaa
    20761 tccgcaatac tatttgctga atgtagcttt tcctcgccat tcttaacagc ccttaatact
    20821 tctgctgtct caaaattagg ctgataatca aactgaaaac gtttttctgt tgcgattttc
    20881 gctaatgtca ttcgcatcac atcagagaca gtcaagccga taccggctaa cacctcactt
    20941 gcttgctctt taatttcagg gctgattctt acgcttacta atgcactatt tgccatcaaa
    21001 aactcctttt gtatatcaaa tgatatacaa aataacattt aacaaaaaat tgtgcaataa
    21061 aaaagaaatt caaagaaaag aaatgaatag ttaaaattag ctcgttacaa gaaatcattg
    21121 agttactcaa gaaatcaagg taatataaag aagtctgggc ggaacacgaa cccgccccta
    21181 gcatctagcc gcttacaaga acagatagat tagttgaaag agcgtgaaaa tttcaactgc
    21241 tgcacacaga aacccaagtg caactaaaat caatagtagt tctttcattg taagcctcct
    21301 tagtgctact aaggatgatt taggctcagg ctactgcgaa tagccctaac gagcctacca
    21361 gtagcacaat caggattgta acaaaaaagc tgtgaatttc acggcttttt ttgtatctat
    21421 atacagtata ttaatatgaa taaaaaaccc cttgcccttt ttttaatggg gccgactgcc
    21481 tccgggaaaa ccgatttagc tattgcttta cgccaagaat tgccggttga ggtaatcagt
    21541 gttgattctg ccttaattta caaaggaatg gatattggca cggcaaagcc aagcaaggaa
    21601 gagcttgccc ttgcaccgca tcgcttgatt gatattttag accctgccga gagctattcg
    21661 gcgatgaatt tccacgctga tgcgttgcgt gaaatggcag atattacctc acagggtaaa
    21721 attccgctct tggtgggtgg cacaatgctt tattacaagg cattgcttga agggttatct
    21781 cccctgccct ctgccgatcc agccattcgg gctgaaatcg aaagccgagc ggcacaacac
    21841 ggctgggcaa cattgcatca agaattagtg aaaatcgacc cgattgccgg tgcaagaatt
    21901 aacccaaatg acagccaacg gatcaaccga gcgttagaag ttttttacat taccggcaaa
    21961 acgatgaccg aactcactgc tcagcaaggt gaggctctac cttataatat cttacaattt
    22021 gcaatcgctc ctcaagatcg tgcagttcta caccaacgga ttgaacaacg ctttcacaaa
    22081 atgattgagc taggctttga agaggaggtc aagcggttat ttttacgcaa agatttgcat
    22141 attaatttgc cctcgattcg ctgtgtgggc taccgccaaa tgtgggaata tttgcaaggc
    22201 gatatttcgc tcgatgaggc gatctttaaa ggcatttgtg ccacccgcca gctggcaaaa
    22261 cggcagatta cttggctgcg tggctggcaa ggcgaactga cttggttaga tagtttagct
    22321 ccgaccagtt ctaaagcaaa aatggtggaa aagatcgatc attatttaaa gaattgtgat
    22381 aatatctaaa cgcctttggc acttatcgca ttatttggtg tcttaaaaat cacacaacta
    22441 taaaaaggaa aataacaatg gcaaaaggtc aatctttaca agatccatat ttgaatgcac
    22501 ttcgtcgtga gcgtattcct gtttcaattt atttagttaa cggcattaaa ttacaaggtc
    22561 agatcgagtc gttcgaccaa tttgtgattt tattaaaaaa cactgtaagc caaatggtgt
    22621 ataaacacgc tatttcaacg gttgttcctg cccgtgcgtt atcgcataac aataacaacc
    22681 aagcccaaca cgctcagcct gctgccgaag taactgaaca agcggaataa taacattatt
    22741 actcaaccaa tgttaaacga atcattgcca aactcagaag aaaattctgc gtttggcttt
    22801 gctttatctg aagcaagcca aactacagaa gccgcctcgc ctaccgatcc agaaaatcaa
    22861 gataaagcca ttttggtgca tctctatctc gggcaacata aagatgttga aaatttgctg
    22921 gaatttaaaa cgctagcaga atctgccggt gtcgaagtgc tggcaacgct taccaccagc
    22981 cgccaaagtt cgcatatcaa atattatgtg gggcaaggca aagcggaggg aattgccgaa
    23041 gcggtagaac gactcggggc aacagtagtg ctggtgaacc atcaacttag cccggctcag
    23101 acccgtaatt tgcaatcgtt atgcggctgc cgtgtggtgg atagaaccgg cttgattttg
    23161 gatattttcg ctcaacgggc aagatcgcac gaaggcaaac tacaagtcga gctggcacaa
    23221 cttcgccatt tatcgacccg tttggttcgc cgagttacta atcaagacca acaaaaaggc
    23281 ggagcagttg gcttgcgtgg tccaggtgaa acacagctcg aaaccgatcg ccgtttgatt
    23341 aaagtgcgaa tccaacagtt actcaaccgc ttggaaaaag tcagcaagca acgcaatcaa
    23401 aatcgaaaaa ccagacaaaa agccgatatt ccaacagtat ccttagtggg ctataccaat
    23461 gccggcaaat ctaccctgtt taatgcgatt acccaagctg gtgtttatgc tgccgatcaa
    23521 ctttttgcga cccttgaccc gactttacgc cggattcagg tgcaagatgt cggcacgaca
    23581 attcttgccg atacggtagg ttttatccgt tttctaccgc acgatttagt ttcagccttt
    23641 aaatctaccc tgcaagaaac caccgaagct actttactgc tccacgtcat tgacggctca
    23701 gacgaacgca aaaacgaaaa tattgatgcg gtaaatcaag tgttggacga aatcggagcg
    23761 ttagatattc ctactttatt ggtattcaat aaaattgata aattagaagg tgtagaaccg
    23821 catattgaac gcaatgccga tggcacgcca gttgccgtgt atctttccgc ccaagaaaat
    23881 agcggcattg agctgttatt ccaagccatt caagaaaggc ttcgcagtaa cttagtgtgt
    23941 gaaaacttgc tcctcccggt tactgccggt gcaatttacg cacaatttaa agcagaaaac
    24001 tgcattaaaa ccgagcattt taatgagttc ggtgaacgga ttatctctat tgaaattaac
    24061 gaagtgcaat ggaacaaatg ggtgaaacaa tttccggatc tagccgaata tattgagctg
    24121 gcaaaatggg ggtaattaat ctcacttctg agtaagttat atttaaatta tgcaagcggt
    24181 caattcttta cgtttttttg caaaaaagtg taaagaattg accgcttgtt ttatccatta
    24241 aatccaattt agccaataaa aaaatccctc aaataaacca gatttccccg ttctatttga
    24301 aggattttat ttattcttcc ccaaaagtgg ggaagaaaag cttaatcaag cagttactac
    24361 cactgataac ctacgcttgc agcagcacct gtatcaccac ggctgttaga gttaacactg
    24421 aatttgatac ccactttacc attatctgat aaacgagaat aacctacagc aatagctcct
    24481 tgaccacggt aagcacctac accggctgaa accatcgatt taccaggttg tgttacgtga
    24541 tataaattac ctgcggctaa tgcacctgca atacctgcac gtaagtcttt atctacgtta
    24601 ctgatacgat tgttcagacg attttctgca cctttcaact gattcacatt aacagcatca
    24661 gtgcctttca cacccggagc aacgttcgta atacgtgttt gcgcattctt gctacctgca
    24721 atgttaagct catttacgcc atcttttgca acagttgaac tgatagttgt accaccaact
    24781 ttcactgaat caaattcaag attgcttgag gttgccactt caacagttga acctttacgt
    24841 gaaacaacga tgtttttgcc acctgaaacg gccactttac cattgttatt aacacgttga
    24901 gcacctttct ctgaagtttc agctacatta ccatcaacag tgagatacca gcctgtattc
    24961 tgcattgcat tatacaactg gctaccgctc acaacatctt tacttgttgc cgttacatca
    25021 ccatctttaa cgttagtgat cttcgtgcct ttcgcatcaa taccgccttt agttacactt
    25081 gggccgtctt taatggttaa accattgtta tttacggttg tgtcgccagt tgttacagaa
    25141 ccatcttccg ttaaatcaat tgctttcgct aattgtacct ctaatgtgtc tgtaccattc
    25201 gctttcacat tgatgttgcc tgatgctgac ttaaagtttt cagaagctgt tttatccaca
    25261 ccttcacctt tcactttaac ttcagtattc agtttctgac ggttcttcac atcttcattg
    25321 ttaccagaga agattaaacc atcatttaag gttgcaactt gttctgtgac agttttaccg
    25381 tctttatctt tggtctcata aacgatacga gtcttaccgt tctcacccgg taatccatct
    25441 ttaccatttg taccatcaac accttcagca ccatctttca ctgcaatatt tgcacttgca
    25501 ccatctttac cgtcagcgcc tttcggaccg gttaagccga tagagccatc tttaccgttt
    25561 aatacaacag aagcgccatc tttacctgta gctccaattg aaccatcaac accgtcttta
    25621 ccgtcacggc ctgcagtaat tgtgccgtca cctttaatgg ttacgccatc tttaccgtct
    25681 ttgccagcaa taccgatttg accgtcttta ccatctttac caccaatggt taagttgttt
    25741 ttcaagccga aggtcacgtt attaccttct ttagtaataa taatgttacc gtctttgttg
    25801 tttagatcaa ctgttgctcc tggtttaacg ttgcctttgt ctttaccatt tgctgttaag
    25861 ttccaacctg cgttagcaac ttcttgcact tgatataact ggctaccatt taccgcatct
    25921 ttgctggttg cagaaatttc accgtcttga acgttaatga ttttcttatc gcctgcattg
    25981 ataccggctt tagttacact tgggccatct ttgatagtta aaccatcatt atttaccgta
    26041 gtatcaccaa tagttacaga accatctttc gttaaatcaa tgtctttcgc taatttaact
    26101 gttaacgcac cattgttgtt tacaacaccg atattgttat cggacaggtt cgttaaatca
    26161 gtatcaccgc ctgagatttt taacgtctca ttaagtttct taacgatttc tttaccgtca
    26221 tcacctacga atcttaagcc atcgttcagt gttgcaactt cctcagttgt accgtctggt
    26281 ttctcataaa cgatacgggt tttgctttcg ccatctttac cgtcgttacc gtcaaggcct
    26341 ttagcaccgt cttttacaga gatagttgca cttgcaccat ctttaccgtc agcgcctttc
    26401 ggaccggtta agccgataga gccatcttta ccgtttaaag taacaccaac tgtaccatct
    26461 gcacctttaa caccgattga accatcttta cctggaccgc caatggtaaa atcgttattt
    26521 aacgtaaagt caatcacatt atcacttact gttgtgatga tgtttttgtc tttagaggtg
    26581 tacttaacag tttcacctag tttaacgtga tcagtttcac cattatccgc tgcaatgcta
    26641 aagcctttct cgataatatc gttgcttgca tttacaacat cattaatatt cgcagcgtta
    26701 gtaccaactt cttttaattg atcgtctgtt aagtcgttca ctgaagtgat tggcttacca
    26761 tctttaccgt taatgccgtc tttacctgct aaaccgtcaa taccgctctt cacgttaaca
    26821 atttggttgc cgccattgtc tagaccgtct tcagtaagct taactgcttt accatctgtg
    26881 ccatcttttg gcgtgatagt tacgccatta ttatttacta ctgttgttgg acctttacct
    26941 tcttgaccat tctctccatc ttgtggtttg aatgtagctg agttcaagtc tttaagatct
    27001 ttagctaatt gaacagataa tttaccatct ttgctgttta cgccgatgtt atttgcagtt
    27061 agcttatctt tatcagctcc accaatgatt tctaaggttt cattcaattt cttagatact
    27121 agtgttgcat catcaccttt aaagtgtaaa ccatcattta aagtagctac ttgctctggt
    27181 tcacctatag gatcaccatt gccatctgtt ggctgatatt ggatacgagt tacaccatct
    27241 ttacctggta aaccatcttt accaacaagc cctggtttgc cctcagtacc tttaatggtt
    27301 aaaccatctt taccatttgt accgttcaag ccgattgaac catctttacc gttaagaaca
    27361 actgcagaac cgtctttacc gtttacaccg atagtaccat caataccatc tttgccaggg
    27421 cgacctacag tgatagctcc atctttacca tctaaagcaa tagcatcttt accgtcttta
    27481 ccagcaatac caactttacc tggttcacca tctttaccaa cagtaatatt attcactagg
    27541 ctaacttcta atgcatggcc accatctttc tcaacaacgt ttgttttaac attgccatca
    27601 ccaatgatct tagctgtcgt acctaagttt tgcttaaact ccttgttgtt ctcatctttt
    27661 agaccaaacg catctgttgt cacctcagta acagtctcag taacagtatt tttcaagtca
    27721 ccgacgttaa ccgcattgtt aagaacatca cctgctgcct cagtaagttt aacaggttga
    27781 ccatctttac cttttaagcc gctatcaaca ttggtgattt ggttaccacc gttgcttaag
    27841 ccatcctctg ttaaggtaac attagattta gttgcatcat taggatcttt cttagcaatc
    27901 gttacaccat ctttattgat aactgtagaa tcaccttgtg tgccgaatgt tgcactatct
    27961 aagcctgcta gatcttttgc taacgccaca gtaatggtat tgccaacaac ctgtgtcatg
    28021 atatttttac cagcatcaaa cttagcccaa tcagtgtttg ttgtagcacc tttaatatcc
    28081 acctgcgtat ttaatttcgc atcgtgaact ttgccatcat tcgcaccgaa ttttaagcca
    28141 tcgttaagtg ttgcaacttc ttctttatca ccatttggtt tttcgtaaac aatacgagtt
    28201 ttgctttcgc cgtctttacc gtcgttgccg tcaagacctt tagcaccttt ctcaacttta
    28261 attgatgctt taccatcttt tccatctttt ccatttacgc catcaacgcc gtggaatacg
    28321 atggcttctg gtttaattgt tacaccatct ttaccatcag cacctttaac accaactgaa
    28381 ccatctttac ctggtttacc accaacagag atgttatcgg ataagccaaa atcgatggta
    28441 ttatttgtta cggttgtaac aacattctta tcggttgagg tgtacttaac agtttcacct
    28501 aacttcacat tgtcttcttt agcaccacct cctaagccag agtgatccgc tgtaatgtta
    28561 aagccagttt taactaaagt gtcagctact gcgtaaagtt gtgaaccgtt aatcgcatct
    28621 gttgaattgg aagcaatttt acccggtgca acaaacttaa tttggcgagc attggttgca
    28681 ttacccacac tcacataatc accatcaaca acattttcat cgccagcaaa gctgctatat
    28741 tttaatgtgc caacagttgc agtatcttct ttagttgcgg ttgcttcagt agagtcagaa
    28801 cctagaatta cagaaccctt tgtcttaaca gtaacattag aacctaatac gaaagtatct
    28861 ttacctgaaa ctgtattgtt ataacctaaa gccgcagcac gaatacccga aacagtacta
    28921 tttacaccgg ctgcaattga gtttttaccc tttgcggttg agttgtaagc aatagcagtt
    28981 gcataattac cttttgattt ggcctcaaaa ccaattgctg tgccaccttc atgcgtaata
    29041 ttggcacgtg tacctactgc tgtcgcattc gccttactta cattagcact ataacctatc
    29101 gcaacagaat tattaccact tgaattagcc gtatcaccaa ttgccattgc accatctttg
    29161 ctcgcgttag aatgcgaacc aatactgatc actttttctg catgagagtt tgcattccaa
    29221 ccaatgctaa tagcattact tttccaggct ttagaagcat taccaaaagc aatcgcaccg
    29281 attcctgttg tattcgaatt tacaccaaag gcgatagaac catcacctgt tgcacttgca
    29341 tttgttgaaa acgccaaagt atcattcgaa tttgcacgag tattcgtacc caaagcaaat
    29401 gcattatttg ctactttcgc tgtatcagga ttaattacct gtcctaattc agaaatattt
    29461 gaattctcta atttaaagcc accggaccaa gcgttagtac caatggcaaa tgaatggtta
    29521 ccattagttt tcgctttagt accgattgag aatgcatctg ttccaaatgc taaagtatta
    29581 ttttgcccat cataaattga acgtctattt tcatgaccgt aacttccatc cactgtctgt
    29641 ggagtaccac taccaatcgc aaaagaacgg tcacctagcg ctgtagccga agcaccaatg
    29701 gcgaagctag ctgtagcatt tgcccaagat gttgaaccaa ttgcagtaga ataatctgca
    29761 attgcagcag attgacgcat tgcagcaaat gagttaaatc cttccgcacg tgcagaggta
    29821 cctaatgcta cagaaccaat acttgcagta cgagaaaaag aaccaattgc aatagacaat
    29881 ccccctccag aatatgaata atcaccaatg gctatgcctg acgctttcgg ttttcctcta
    29941 ctttttctgt tattgtctaa agctacagca ttgtgtccaa ttacaattgc tgaggtagta
    30001 ttagacttat acaataatct agaatccttc tccttattaa cagagttatt agattcttga
    30061 agcttagttc tgtctgcata ggataagcta cctgggttaa agtagttata tggattcgta
    30121 atagaatctg tagccaaact agtgtttgta taaatatcta taccaccatt aacaactttt
    30181 tttggtgctt tttgttgtac ttctattcta tcaataatca ccgccgcttc tgccggtgta
    30241 gcagaaagca taaaggctgc cattccactg ataagggttg ctccccctag aatgctagcc
    30301 gctgctaatt taatagtacc gcgcttatca gtagaagaag cggctttacc ttgcgatcga
    30361 gcaagttcag acacaacttc cattttttgc gtcgtttggt taaaaataac cttaaatatt
    30421 ttgttcataa ttttatacct ttagaattat tataaagctt acttcgtaaa taattcggca
    30481 attacaaccc accgaataaa caaccttact actcttaatt tagtaagagg aaagtcatat
    30541 cgataatagt aagattttca cttcaaaagt gaaacaagct tttcacttct ttacaattct
    30601 cttattatca agataataaa attaacaaaa cccct
//
LOCUS       DANLZD010000008        29999 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.008, whole genome shotgun sequence.
ACCESSION   DANLZD010000008 DANLZD010000000
VERSION     DANLZD010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 29999)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29999)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29999
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.008"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(231..1241)
                     /gene="iolG"
                     /locus_tag="PXE26_000246"
     CDS             complement(231..1241)
                     /gene="iolG"
                     /locus_tag="PXE26_000246"
                     /EC_number="1.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005537901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol 2-dehydrogenase"
                     /protein_id="HDL5592872.1"
                     /translation="MLKVGIIGAGRIGRVHSESISKYVKGAEIKAISDVKITEELTAW
                     AKSMGIPEVYDDYKKILQDPEIDAVLVCSSTNTHAPISIEAAQAGKHVFCEKPVDADP
                     AKIREVLSAVEKAGVKFQVGFNRRFDHNFKAIKDRVAAGDIGEPHVIRVTSRDPEAPP
                     IEYVKVSGGMFFDMTIHDFDMIRYLSGSEVEEVFAVGTVLVNPEIGKAGDIDTAVITL
                     KLKNGAIGVIDNSRKAAYGYDQRAEVFGSKGAIHITNDTGSTAVFSGENGVVAEKPKY
                     FFLERYMQSFADEISCFVDSVVNDKPTLVNGNDGLQPVLIALAAKKSLEENRPVKLSE
                     VA"
     gene            complement(1243..2139)
                     /gene="iolE"
                     /locus_tag="PXE26_000247"
     CDS             complement(1243..2139)
                     /gene="iolE"
                     /locus_tag="PXE26_000247"
                     /EC_number="4.2.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011817366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="myo-inosose-2 dehydratase"
                     /protein_id="HDL5592873.1"
                     /translation="MKAENIQLGIAPIGWTNDDLPELGAENTFEQCVSEMALAGYTGC
                     EVGNKYPRDVAVLKHKLDVRGIQICNAWFSTFFVDGKREETIAEFIKHRDFLHAMGAK
                     VIGCSEQSRSIQGTTKSVFKEKPIFNDEDWKRMAEGYNELAKLAAEKGMKVCLHHHMG
                     TGIQTPEEVDRYMAEVNDDVYLLFDSGHLYYSEGCQKAMLGVLEKYIDRIIHVHLKDV
                     RDEVMAEVKAKDLSFLEGVKKGTFTVPGDGVIDFRPIFDILEKHDYKGWMVVEAEQDP
                     ALANPFEYALKGRKYIRETAGV"
     gene            complement(2266..4200)
                     /gene="iolD"
                     /locus_tag="PXE26_000248"
     CDS             complement(2266..4200)
                     /gene="iolD"
                     /locus_tag="PXE26_000248"
                     /EC_number="3.7.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3D-(3,5/4)-trihydroxycyclohexane-1,2-dione
                     acylhydrolase (decyclizing)"
                     /protein_id="HDL5592874.1"
                     /translation="MQTTRLTVAQALVQFLDNQYLDVDGKEIKFVHGVAAIFGHGNVL
                     GIGQALAQNAGGLTLYQGRNEQGMAHLAMGFAKQNLRQRIIACTSSVGPGAANMVTAA
                     ATATANRIPLLLLPGDVFATRQPDPVLQQIEQPYDLSISTNDAFRAVSKYWDRVQRPE
                     QLMSACINAFRVLTDPAETGAVTIALPQDVQAESFDFPNSFLQKRVHRLERTPPTTAM
                     IKQAVTLIQTKKKPLIVCGGGVRYSQAGQILQKFAKQFGIPFAETQAGKSAVVSDHAL
                     NVGGVGETGCLAANRLAKEADLVIGIGTRYTDFTTSSKWIFQNPNVQFLNINVARFDA
                     YKLDGVQLVADAKTALEALSQAIPTDYQAQWENEISQAKADFADEIQRLRAVQYHPDF
                     TPEINDNLDHKAVHNEFIQLTGSQLTQTQVLGIVNETIDNNAIIVAAAGSLPGDLQRT
                     WLSKGEETYHLEYGYSCMGYEVSAAVGVKIARPEQEVYALLGDGSYLMAHTELVTSIQ
                     EGKKINVVLFDNMANGCINNLQIGNGMDSFGTEFRFRNGETNQLNGGLVPIDFAKNAE
                     AYGCKTYRVTNEAELRAALDDAKKQTVSTLIDIKVLPKTMAHGYGCWWHVGVAEVSES
                     ERIQQARQRSEEQLAKARKY"
     gene            4468..6384
                     /gene="iolC"
                     /locus_tag="PXE26_000249"
     CDS             4468..6384
                     /gene="iolC"
                     /locus_tag="PXE26_000249"
                     /EC_number="2.7.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-2-deoxygluconokinase"
                     /protein_id="HDL5592875.1"
                     /translation="MATVNHQDRPLDLICLGRVAVDFYGQQIGSRLEEMTTFSKYLGG
                     SSGNVAYGTAVQGLRSSMLARVGDEHMGRFLREELQSVGVDTSHLITDKERLTALVIL
                     GIKDKETFPLIFYRDNCADMAITKDDFSEAYIASSRCLAITGTHLSNPKTREAVLTAL
                     EYAGRNEVKRALDIDYRPVLWGLTSLGDGETRYIDSAEVTKSLQEVLHHFDLIVGTEE
                     EFHIAGGSTDTLTALKNVRKVSNAVLVCKRGALGCSVFEGELPNDLDGGLNVYGVRVE
                     VLNVLGAGDAFMSGLLRGYLNNEGWEQACHYANACGALVVSRHGCSPAMPTKRELDDY
                     LTRAESVPRPDLDERLNHLHRVTTRKKQWENLCIFAFDHRKQLVDMANKVGADLARIP
                     KLKQLLLKAMEQTATQSGLPQNQAGILADTTFGQDVLNEITGKDYWIARPIEEPSSRP
                     LELEYGDLGSQLASFPRDHVIKCLAFYHPNDESGLKARQDRKLKEVYQACCRTGHELL
                     LEIILPADMPQSEAFYNQAIAHFYQLGIKPEWWKLPDVSRAQWQAISATIEANDPDCR
                     GILILGLDAPLEVFKDTFEQAKGCEKVKGFAVGRTIFGEPSEKWLAGELDDNTLISAV
                     SEKYRTLIDLWQQR"
     gene            6673..8013
                     /locus_tag="PXE26_000250"
     CDS             6673..8013
                     /locus_tag="PXE26_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HDL5592876.1"
                     /translation="MSCNTSPKRFHASWESIKQHQVPEWYEDAKFGIFIHWGIYSVPA
                     FAPPTCQLGEIDIDEQWFCNNPYAEWYFNSINVKKGPTYEHHIKTYGESFAYNDFLPL
                     WKAEKWQPAEWAKLFAKAGAKYVVLTTKHHDGFCLYPSKYTDFNCMQAGPKRDLMGEL
                     TENVREQGLKMGAYYSGIIDWTYSSAPIFTESQNFSNACPTYEYADYAYKQVVELIDR
                     YKPDVLWNDIGWPKVGEHMLPHLFAHYYNSVQEGVVDDRWNKLWCDFTSKEYKHGVAS
                     RDKKWEMCRGMGLSFGYNQVEDESHLISVKDLISLLVETVADNGNLLLNIGPKADGTI
                     PQEQVERLLALGSWLEINGEGIYKSRCSQHQTEQIGDVTYRYTKVGADLYLYIDGLTE
                     AQISLPLSVYGELQALNTELKFTIENTAQGRVLHIQNYQPDWYVLGFKIADGEK"
     gene            8016..9356
                     /locus_tag="PXE26_000251"
     CDS             8016..9356
                     /locus_tag="PXE26_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDL5592877.1"
                     /translation="MSVSQRFIDFMNAHVAPVARRMENQPHISAIRDGFIVVLPFLIV
                     GSFIMILLIPPFDENTQNAFGQAWWRFANWASPYGWNFFQMSFNAISLFTSASIAYNL
                     AKAYKREPLPAAFLSVMAFLLVAAPVKDGMMDIKFFGGIGLFSAIFIAIYSVEMTRLL
                     EFLKIKIRLPKEVPHAVAESLNIVIPILAILLTLYPFAIWVESATGRNIPQLIMDFMA
                     PLIAVSDSLGAICLFVIATHLLWFLGINGSLVLMQLWTPFLLQNMAANLAAFQAGEPL
                     PFIITNSFWDFYIVHGASGGVIALAFLLVRSKSAHLRSIGKIGLVPSFFSIGEPIVYG
                     VPMVVNPLFFIPLIFAPLANAVIAYLILDFNLIHRVYLMAPWTTPAPIGAYLVSAGDI
                     WAPILSIALIILDIVIYYPFFKMYEKVCVEKEKAQNLDEKAQQELLEKARMAAQ"
     gene            9494..10318
                     /locus_tag="PXE26_000252"
     CDS             9494..10318
                     /locus_tag="PXE26_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDL5592878.1"
                     /translation="MNGPTQLAHFQEQIRKEYDGLSKRLKQVAQYVLDNGNSVVFDTV
                     STIAERADVPPSTLIRFANAFGFSGFNEIKQLYRQDMMEGTSRYTERVQLFRQIEPLD
                     EQNSELNHILDVFVQGNTQALQQLSTQVSEEQLAQTVDILHNAKRIFIVGLKRSFSIA
                     NYLNYALHHLDYDVFMIDGSGGMFDEQLSRIREGDAVIAVSFSPYANETLNVVTATAR
                     PGVKHIAITDSQLSPLLSFSDVSFIIKEAQVSGFRSQCATMTLAQTIAVSLALKKA"
     gene            complement(10362..10604)
                     /locus_tag="PXE26_000253"
     CDS             complement(10362..10604)
                     /locus_tag="PXE26_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL5592879.1"
                     /translation="MSDKSIILEIINALGNKENIKQVEACLTRLRVVLHNNGLLNKSA
                     LKKLGAVDVIKVGDTQQIIFGAKAGQYRDEINALIG"
     gene            10869..11117
                     /gene="rpsP"
                     /locus_tag="PXE26_000254"
     CDS             10869..11117
                     /gene="rpsP"
                     /locus_tag="PXE26_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HDL5592880.1"
                     /translation="MVTIRLTRGGAKKRPFYQIVVVDSRSPRDGRFIERIGFFNPLAA
                     GQAERLRLDVAKVDAWVAKGADLSDRVASLVKEARKAA"
     gene            11150..11677
                     /gene="rimM"
                     /locus_tag="PXE26_000255"
     CDS             11150..11677
                     /gene="rimM"
                     /locus_tag="PXE26_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005626427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HDL5592881.1"
                     /translation="MSEQKIEVVGKLGSTYGIRGWLRLYSSTEQTESIFDYQPWFLKI
                     KGQWQQVELESWRYHSNDLIVKLKGTEDREAAQLLTNAEIGVDLSVFPELEEGDYYWH
                     DLIGCSVVNLEGYTMGTVAEMMETGSNDVLVVRNNGKDAFGKQERLIPFLYEQVVKRV
                     DLATKTITVEWDAGF"
     gene            11722..12477
                     /gene="trmD"
                     /locus_tag="PXE26_000256"
     CDS             11722..12477
                     /gene="trmD"
                     /locus_tag="PXE26_000256"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HDL5592882.1"
                     /translation="MWIGIISLFPEMFKAITDFGVTGRAVKQNLLQVECWNPRDFTFD
                     KHKTVDDRPYGGGPGMLMMVQPLRDAIHAAKKAALAVEGGEAKVIYLSPQGRKLDQNG
                     VQTLASNQKLILICGRYEGVDERLIQTEVDEEWSIGDYVLTGGELPAMTLIDAVARFV
                     PGVLGKQASALEDSFAEGLLDCPHYTRPEVLDGMPVPEVLMSGHHEQIRKWRLEQSLE
                     RTWLRRPELLDSLALTDEQRVLLAKIKKQHKIS"
     gene            12504..12854
                     /gene="rplS"
                     /locus_tag="PXE26_000257"
     CDS             12504..12854
                     /gene="rplS"
                     /locus_tag="PXE26_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HDL5592883.1"
                     /translation="MSNIIKQLEQEQLKQDLPSFRPGDTLEVKVWVVEGSKKRLQAFE
                     GVVIAIRNRGLHSAFTLRKVSNGVGVERVFQTHSPVIDSISVKRKGAVRKAKLYYLRE
                     RSGKSARIKERLGD"
     gene            13010..13366
                     /locus_tag="PXE26_000258"
     CDS             13010..13366
                     /locus_tag="PXE26_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592884.1"
                     /translation="MKQLSIRLPDDEFTFIKTFASAHKLTLQNFVMSAIQAKVAEMSA
                     KNKISEESNIHQPLSKDEKIMLNEAKVFYSARSHLKAENVILPSDFMEQIKSGCGAEK
                     MAEMMGYTKEDWESMK"
     gene            13368..13691
                     /locus_tag="PXE26_000259"
     CDS             13368..13691
                     /locus_tag="PXE26_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592885.1"
                     /translation="MGQITFSNIFTKVIFENVLSASTKEKIKQMLFQSVVALPPLHSE
                     RKMILQLKKQKITIFYQVIEEQSVQILAYQFGGTDKLTGVSKAHFKTLDAIFQMTDEE
                     KEGKF"
     gene            complement(13701..14033)
                     /locus_tag="PXE26_000260"
     CDS             complement(13701..14033)
                     /locus_tag="PXE26_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL5592886.1"
                     /translation="MQIEQYQQWVRQFYQQQGWYERSPFMRVTYLAEEIGEVACAVRA
                     IEIGRERPDETEASQQQKRDNLIEELGDVMDNLFVLADKYGISMTEVLERHQAKFEKR
                     YLQKNMEK"
     gene            complement(14126..15322)
                     /locus_tag="PXE26_000261"
     CDS             complement(14126..15322)
                     /locus_tag="PXE26_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDL5592887.1"
                     /translation="MNIPFCLPENISPETFLREYWQKRPLLIRNGLPQIVGLFEPEDI
                     LELALEEEVTARLIQCENEKWSVKSSPLVEEDLEELPVQWSVMVQNLEQWSPELGELW
                     QAFGFIPQWQRDDIMVSCSPLNGTVGKHYDEYDVFLVQGYGQRRWQLGKWCDPSTEFK
                     PNQPIRIFDDMGELVMDEVMNPGDVLYVPSRMAHYGVSESEQGLTFSFGLRYPNATDL
                     LENLCKTIEQQADNINSSEFHLPFRLTPNEQPNALLDPKMVKMFKHQLIDLLQNSEQF
                     DELLTHSVATAASSRRYELLQTDNEYYPDEVQEILEAGGWLQQDANVKILYTENPQRV
                     YVNGEWIDELNEAEMALLIRIANGDSISWNKLASKVQDQAELELMLDTICDWLDSGWI
                     ILSEAE"
     gene            complement(15471..16814)
                     /gene="accC"
                     /locus_tag="PXE26_000262"
     CDS             complement(15471..16814)
                     /gene="accC"
                     /locus_tag="PXE26_000262"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HDL5592888.1"
                     /translation="MLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRELKHVKL
                     ADETICIGPAPSVKSYLNIPMIIAAAEVTNADAIHPGYGFLSENANFAEQVEKSGFIF
                     IGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDGPVGNDPKKNKEIAKRIGYPVIIKA
                     SGGGGGRGMRVVHHEKDLEESIAMTKAEAKAAFNNDMVYMEKYLENPRHIEIQVLADT
                     HGNAVYLAERDCSMQRRHQKVVEEAPAQGITPELRQFIGERCANACREIGYRGAGTFE
                     FLYENGEFYFIEMNTRLQVEHPVTEMITGVDLVKEQLRVAAGLPLSITQDDIKVKGHA
                     IECRINAEDPNTFLPSPGKITRLHVPGGLGVRWDSHIYSGYSVPPHYDSMIGKLITFA
                     ENRDIAIRRMENALSETIVEGIKTNIPLHTQILADKEFRKGGTNIHYLEKKLGLK"
     gene            complement(16886..17353)
                     /locus_tag="PXE26_000263"
     CDS             complement(16886..17353)
                     /locus_tag="PXE26_000263"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HDL5592889.1"
                     /translation="MDIRKIKKLIELVEESGITELEVSEEEGTVRISRAAPAVAPAAV
                     QYAAAPVVAPAAPQVASTVPVAAPAEAPKAAETSGHAVLSPMVGTFYRSPSPDAKPFV
                     EVGQTVKIGDTLCIVEAMKMMNRIESDKAGVVKEILVNDGEPVEFDQKLFIIE"
     gene            complement(17606..18388)
                     /locus_tag="PXE26_000264"
     CDS             complement(17606..18388)
                     /locus_tag="PXE26_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDL5592890.1"
                     /translation="MAVKNEQFIVICNGVFRLFGNIVKILSYPFHALFPKKRFTIPEY
                     SPAKIQSSIPSKITKTIWQTNYSNKVTLPMYANYLFNRLMSLSYDYRYVSTEEREAYI
                     KANADERTFNAYSKLTDGAAQADFWRIFTLLREGGIYIDIDGHLVYPLSKIIGENDSE
                     VLIKRRDKYTNFFLASEAGNWILKDTLELIISNIENRRIEGGVFVMTGPDTLNNAIGD
                     KEVNFRRDKVTCAQGTFTNEYFQYIDKPGSKWNYKKNEDLLK"
     gene            complement(18398..18835)
                     /gene="aroQ"
                     /locus_tag="PXE26_000265"
     CDS             complement(18398..18835)
                     /gene="aroQ"
                     /locus_tag="PXE26_000265"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HDL5592891.1"
                     /translation="MKKILLLNGPNLNMLGKREPQIYGSQTLADIENHLKKLAAAQDV
                     ELESFQANGEEPIINRIHQAFQHTDFIIINPGAFTHTSVAIRDALLSVSIPFVEVHLS
                     NVHSREPFRHHSYLSDIAKGVICGLGAKGYEYALDFAISHLKA"
     gene            complement(18921..19289)
                     /locus_tag="PXE26_000266"
     CDS             complement(18921..19289)
                     /locus_tag="PXE26_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5592892.1"
                     /translation="MAFTIRKMVEQDTHQVFPLMQKLAVFEHYIDSFAITPEVVMESG
                     FRKSPPDFYCLVAENASNIIGILVYYFLPYTAQNRPAIYMKELYVDETARNQKVGEAL
                     MQALKNEAKAHHCKTIKSLE"
     gene            complement(19349..20173)
                     /gene="dapD"
                     /locus_tag="PXE26_000267"
     CDS             complement(19349..20173)
                     /gene="dapD"
                     /locus_tag="PXE26_000267"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HDL5592893.1"
                     /translation="MSLQAIIEAAFERRAEITPKTVDAETKAAVEEVIAGLDNGSLRV
                     AEKKDGEWVVNQWVKKAVLLSFRIADNEIIDGAETKFYDKVPTKYGNYTEEQFKADGI
                     RAVPGAVVRKGSHIEKNVVLMPSFVNIGAYVGEGTMVDTWVTVGSCAQIGKNVHLSGG
                     VGIGGVLEPLQANPTIIGDNCFIGARSEIVEGVIVEDNCVISMGVFIGQSTKIYDRET
                     GEVHYGRVPAGSVVVSGSLPSKDGSHNLYCAVIVKKVDEKTLSKVGLNDLLRSIDE"
     gene            20321..20983
                     /locus_tag="PXE26_000268"
     CDS             20321..20983
                     /locus_tag="PXE26_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HDL5592894.1"
                     /translation="MENFANLLTGKTREHLVPLPNALSDKHYLQPQVVEAFLTLQHAA
                     KQAGFNLQPASTFRDFERQKGIWNAKFRGERKVHDDNGVAIDMAALSDLEKCKAMLRW
                     SAVPGASRHHWGTEIDIFDPDLLPENTPLLLEPWEYLEGGYFADLTKWLHVNAETFGF
                     YFPFDGKHSRVGFEPWHISYRPISNEYEQRFNDEILKAAWQDEEVAGKECLLEHFEEL
                     LK"
     gene            20980..21732
                     /locus_tag="PXE26_000269"
     CDS             20980..21732
                     /locus_tag="PXE26_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5592895.1"
                     /translation="MIQLINETQQHDKFRQICDKWQLVEDKSSPLALVLTEERLELRK
                     LDEPKLGAIAVNFVDGTMAHRRKFGGGRGEAVAKAVGIKGDYLPTVIDATAGLGRDAF
                     VLAAVGCKVLLVERNPIVAALLEDGLNRAYQDVEIGSFMQERMILADVRDISQLDPQS
                     QMAEVVYLDPMYPHKQKSALVKKEMRVFQHLVGADLDSDSFFLPAKGLAKKRVVVKRP
                     DYAPFLAEQKPDFSHTTKNHRFDVYLSHLKND"
     gene            21823..22659
                     /gene="ftsN"
                     /locus_tag="PXE26_000270"
     CDS             21823..22659
                     /gene="ftsN"
                     /locus_tag="PXE26_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HDL5592896.1"
                     /translation="MPQRDYVARSNEKKSKKNQKESNVKKILMRIIGVILFFGIGLWF
                     LKSSAPVPTVPSAPQPANSQTKSELPSRPEETWSYIRDLETRTVITDNSQTSQERLAQ
                     LTAEQKQQIEERRKQEEARLAAEQAQQKPATDVSATELAPKTEEVKSLTEEELAAKKA
                     QEQALAQKQAEEKRRQAELKKQQEAKKEQPAKIVASAATLADKAANQAGKFGLQCGAF
                     KNKAQAENMQARLAMAGFNARIASSADWNRVFVGPIGDRAATSRAQSNARSVAECVIV
                     AM"
     gene            complement(22701..23882)
                     /locus_tag="PXE26_000271"
     CDS             complement(22701..23882)
                     /locus_tag="PXE26_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDL5592897.1"
                     /translation="MKTELDMIVIGGGMIGAATALGLAKQGLRLALLEKNPLPTFNPD
                     SDYDLRISAISMGSIQLLEKLGVWEQIVAMRSTPYTQLETWEIDGFNTLFSAADLGLE
                     KLGDMVENNVIQIALWEQLKQYPNCLQAVGFEQIFANKAGEYWEVTVDGNTFAAPLLI
                     AADGANSQVRQWAGIGLTAWQYRQHCLLATVTTEKPAPSGTWQQFYPTGPRAFLPLSG
                     NHGCVVWYDSPQKIAELKMLPAEKLGVAIEQHFPSRLNAELGNIQVQASGAFPLTRQH
                     AQHYVQNGVVLVGDAAHTINPLAGQGVNLGFKDVKTLLEVIEQAVKKGKNFASEQVLQ
                     RYEQKRKPDNLLMQTGMDVFYKAFKTDLLPLKIARNVGLVLADKVSPIKKQALKYAIG
                     I"
     gene            23989..24327
                     /locus_tag="PXE26_000272"
     CDS             23989..24327
                     /locus_tag="PXE26_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592898.1"
                     /translation="MSCKTHANHEHEHGEGCGHTAIKHNDHIDYLHDGHLHHNKHGDH
                     YDEHVLEVNETNPADCNAAHCCGDHVHGEVCGHEAVPHGDHIDYIVNGRLHHQHGDHC
                     DDHGPVEIVK"
     gene            24459..25328
                     /locus_tag="PXE26_000273"
     CDS             24459..25328
                     /locus_tag="PXE26_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HDL5592899.1"
                     /translation="MTLAIVYSRASIGVEAPLVTIEVHISNGQPKLTIVGLPEATVKE
                     AGDRVRSALLNANFIYPPQRITINLAPADLPKEGGRFDLPIAIGILAASGQIDSDLLT
                     QFEFLGELALTGHLRGVHGTIPAVISADKAKRQMILAKQNANEASLVSNATTYFAGSL
                     LEVVNMLNKRDKLPICQHISQHSAEIRPLVSRDLTDIIGQQHAKRALMIAAAGQHNLL
                     FLGPPGTGKTMLASRLADLLPEMTDEEAIETASVTSLVQNELNFQNWKQRPFRSPHHS
                     ASMVALVGGGCEN"
     gene            25420..27231
                     /locus_tag="PXE26_000274"
     CDS             25420..27231
                     /locus_tag="PXE26_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592900.1"
                     /translation="MFYLNNDNFKREPYRGYCPSHLEKLFTKPHLDIRGNGYYYPDNE
                     YVVAWYESDFIFKSRKAQAHAKVKLVNLTCPKYTGKNSAEYLSVLYISVPLNYLHYFT
                     IGSIWKGGVAKEQFALEEFYITVEAENQDGKRENLSIVSFGESEENGLEKPFDYTIYT
                     IPTEYHNYGDDLNRLLSISYQNQKFIIHPLHIFMMHYGYSTDIKRILATYPLDEVRER
                     LFIDKVVENFDVERYVVLPKYFVKKDAIFLYHFKYDEETTGTRVKKLVSQFRLNIHNQ
                     THPIEIDFWHTQKVELKIRGVRLGNAVLCAEIIGLNQPEGEDITLVLSQSKREKSGNK
                     TEEQNNEVNNVPITRVYTREPELDELPLTDNSPDNRTVEYNKRQFELLGRQRQIRALK
                     KAREESNQKMKALTPDEIDSLGVGESDGRNGKVGLAFCFLDDTPVGKSSKLYKLWQHA
                     KAVAEWNHGEAHWYTPNLGFRNDDELLPVSLETNKCFDYPEIAIIIRLQIYGETFFLI
                     DFSMKQRDISIRGLGYKPDPNEDFLYESDMSKSELSELLSAVHHHEHLPKEYIEKKNK
                     EKTKLTTFNHSEAESSNWAYNAVQKLTSRAITKPTYF"
     gene            27240..>29999
                     /locus_tag="PXE26_000275"
     CDS             27240..>29999
                     /locus_tag="PXE26_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HDL5592901.1"
                     /translation="MNAEQRVIVTPTFWGKFFGKIKSVELQQNKVIVTDKKNNITEHD
                     LGKTFDFPAIQKSFFGTKLFFKDDSTEVVLSKLAKKQTDSLLLEIEKVVASNIKVKVK
                     EGFQHFANLAENQYLRDSDIPTLNDRVRLSVLSYGDNKEHFQKYFDESLVKKIQYISS
                     LFPVNAINAQTIRREYEQHVLNHRKHFFDVIESNPLTEQQRLSVIRNNDINMVLAAAG
                     TGKTSVMVAKALDLIDSGACKSEDILILAYNRDAATELSERLQERAREANLDLENSPS
                     ISTFHALGRRIIKECGKSVHLSKFAEDPMKLDRWFNKWLEDYIKEDPDNLAKFIQLAY
                     QPIDPFQFKTKDEYDRYVNDNDYRTLQGERVRGYQELLIANWLFSHSVEYEYEPRYVS
                     KRRIEIGFDYKPDFSLGDGVYLEHFGIDRQGRTRADINAQEYNANIQRKRELHAEHNT
                     TLLETYHYNWVENTLYKRLEQLMNEQFIPLKPKSQQEILDALNESGIFKENKNRYLKC
                     LQAIRTERLDYQQILKRLTDAKIVYAKEYATLLMRIHDAYVKELRSANEIDFDDMILL
                     ATQLVKTGEFKPKWKHILVDEFQDISMARLELLKEIYTKGPRPIWTVVGDDWQSIYRF
                     SGGKLEVTTRFNDMVGSHTLSKLEKTYRYNNSIADTAGQFIMQNPEQYQKNVVTHTKV
                     ADSCVHLYDSHVVKDEKSEANISLKASAILKLIRQKAPEATVAILARYRYLLEDAKSV
                     IKDKNVKFWTFHGSKGLEADYCILLGFFQGKVGFPNQNKEEAVVEALLPMLDSFPHSE
                     ERRLFYVALTRAKKESYLIADANAPSEFINELLSPKYKIDIVSKRFQERYRTIFKCNE
                     CSTGYFVMKQGKFGQFYSCTSGEVCRSSPRICEKCGRPMKLREGKFGQFWGCSGYGIK
                     GDQCTN"
BASE COUNT         8690 a         6298 c         6454 g         8557 t
ORIGIN      
        1 ttttattggt attgtattaa ctcttttgat aattccagcc ttctatttat ttaaacaatc
       61 aataaaaatt gagcacgatt atatttattt cccaaaagat aataaataaa aactcaaacg
      121 gtcagtttta caaatttttc tgcaaaatgc ttgcgtttga acatcggcta tgccgatggc
      181 acgaagtgcg agtgtagcga gtaaaaccga ccgcttgtat ttatgatcaa ttacgccact
      241 tcactcaatt tcactggtcg gttttcttcc agtgattttt tcgcagctaa ggcaataagt
      301 accggttgta agccgtcatt gccgtttact aacgttggtt tgtcgtttac cacagaatct
      361 acgaaacagc tgatttcatc ggcgaaagat tgcatataac gttctaagaa gaagtatttt
      421 ggtttttccg ccaccacgcc gttttcacct gagaatacgg cagttgagcc ggtatcatta
      481 gtgatatgga ttgccccttt cgagccgaac acttccgcac gttggtcgta gccgtaggca
      541 gctttgcgac tgttgtcgat tacgccgatt gctccgtttt tcagtttcaa cgtgataacg
      601 gcagtatcaa tatcgcccgc tttgccgatt tcagggttta ctaatacggt gccgactgca
      661 aacacttctt ccacttcgct gccggataaa taacgaatca tatcgaagtc gtgaatggtc
      721 atatcaaaga acattccgcc ggagactttc acatattcga ttggcggggc ttccggatca
      781 cgagaggtta ctcggataac gtgcggttcg ccgatgtcgc ctgccgccac acggtcttta
      841 atcgccttga agttgtggtc gaagcggcgg ttaaagccca cttggaattt tacaccggct
      901 ttttcgactg cactcaatac ttcacggatt ttagctgggt ctgcatctac cggtttttca
      961 cagaaaacgt gtttgccagc ctgtgctgcc tcaatcgaaa tcggagcgtg agtgttggtg
     1021 gaagagcaga ccaatacagc atcaatttcc ggatcttgca ggattttttt atagtcatca
     1081 taaacttccg gaatacccat cgattttgcc caagcggtca attcttcggt aatttttaca
     1141 tcagagattg ctttgatttc agcacctttg acatatttgc taatactttc agaatgcaca
     1201 cgtccaatac ggcctgcacc aataatacct acttttaaca tattaaactc ctgcggtttc
     1261 acggatatat tttctgcctt tgagggcgta ttcaaacggg ttggcaagtg ccggatcttg
     1321 ttcggcttct acaaccatcc agcctttgta gtcgtgtttt tctaaaatat cgaaaatcgg
     1381 acggaaatca atgacaccat cgcccggtac agtaaaggtg ccttttttca cgccttctaa
     1441 aaagcttaaa tcttttgctt ttacttccgc catgacttca tcacgcacat cttttaagtg
     1501 aacgtggata atacggtcga tatatttttc cagtacgccg agcatcgctt tttggcagcc
     1561 ttcggaatag tacaaatgcc ctgaatcgaa caacagatag acatcgtcat tcacttctgc
     1621 catatagcga tcgacctctt cgggtgtttg aataccggtt cccatatggt gatgcaggca
     1681 gactttcatt cctttttcgg cggcaagttt cgccaattcg ttatagcctt ctgccatacg
     1741 tttccaatct tcatcgttga aaatcggttt ttctttgaac acagatttgg ttgtgccttg
     1801 aatactacgg ctctgttcgg aacagccgat cacttttgcc cccattgcat gcaagaaatc
     1861 acgatgtttg atgaactcgg caatggtctc ttcccgttta ccgtccacaa agaaggtgct
     1921 gaaccacgca ttacagattt gaatgccacg cacgtccagt ttgtgtttta acacggcaac
     1981 atcacgcgga tatttattac ccacttcaca gcccgtgtag ccggcaagtg ccatctcact
     2041 cacacactgc tcgaaagtgt tttccgctcc cagttccggc aggtcatcgt tcgtccaacc
     2101 gattggggca atgcctaatt gaatgttttc agctttcata gagaaacctc gtttgattta
     2161 tagagataaa tttggatgca agcggttatt tttatcaaaa attttgcaaa tttgaccgct
     2221 tgatattctc ccctcgtagc tcaaagtggg gagttgtttt tttaactaat acttccgagc
     2281 cttagctaac tgctcttcgg agcgttggcg ggcttgttga atacgctcgc tctctgacac
     2341 ttccgcgaca ccaacgtgcc accagcagcc atagccgtga gccattgttt tcggcaacac
     2401 tttaatatcg attaaggtag aaacggtctg ttttttcgca tcatcaaggg cggcacgcaa
     2461 ttcggcttcg ttagttaccc gataggtttt gcagccgtat gcttcggcgt ttttggcaaa
     2521 atcaatcggc actaaaccgc cgttgagttg gttagtttcg ccattgcgga agcggaattc
     2581 cgtaccgaaa ctgtccatac cgttgccgat ttgcaggttg ttgatacagc cgtttgccat
     2641 attgtcgaac agcaccacgt tgattttttt gccctcttga attgaggtca ctaattcggt
     2701 gtgtgccatt aagtaagagc cgtcccccag caaggcatag acctcttgtt cggggcgggc
     2761 aattttcacg ccgactgccg cactcacttc atagcccata caggagtagc catattcaag
     2821 gtggtaagtc tcttcacctt tacttaacca agtgcgttgt aaatcacccg gcaaacttcc
     2881 ggcggcggca acaataatcg cattgttatc aatggtttca ttcacaatac ccagcacttg
     2941 ggtttgggtg agctgggaac cggtgagctg aataaattca ttgtgaaccg ctttatgatc
     3001 aagattatcg ttaatttcag gggtgaaatc agggtgatat tgcacagcgc gcaggcgttg
     3061 aatttcatca gcaaaatccg ctttcgcctg tgaaatttca ttctcccatt gagcttgata
     3121 atcagtagga atggcttggc ttaacgcctc taatgcagtt tttgcatcgg caaccagttg
     3181 cacgccgtct aatttgtacg catcaaaacg tgccacatta atgttcaaaa actgcacgtt
     3241 tgggttttgg aaaatccatt tggaagaagt cgtgaagtcg gtgtagcgtg taccaatgcc
     3301 aatcactaaa tccgcttctt ttgccagacg gtttgccgct aaacaaccgg tttctcccac
     3361 tccgcctaca ttcaatgcgt gatcggacac caccgcactt ttacccgctt gggtttcagc
     3421 aaatggaatg ccgaactgtt tagcaaattt ttgcagaatt tgacccgctt gcgagtagcg
     3481 aacaccgcca ccgcagacaa tcagcggttt tttcttggtt tgaattaatg ttaccgcttg
     3541 cttaatcatc gctgttgtcg gcggtgtacg ctctaagcga tgcactcgtt tttgcaggaa
     3601 gctgttcggg aaatcaaaac tctccgcttg tacatcttgc ggcagagcaa tggtgacagc
     3661 accggtttca gcagggtcgg tcagcacacg aaacgcattg atacaagcac tcattaactg
     3721 ctcagggcgt tgcactctat cccaatattt actgacggca cggaacgcat cgttagtgct
     3781 aatgcttaaa tcgtaaggtt gttcgatttg ttgcagtacc ggatccggct ggcgggtcgc
     3841 aaacacatcg cccggtaata aaagaagagg aatacggttc gctgttgccg ttgccgcagc
     3901 cgtaaccata tttgccgccc ccggcccgac cgaggaagta caggcaataa ttctttgacg
     3961 cagattttgc ttagcaaagc ccatcgccaa atgtgccata ccttgctcat ttctgccttg
     4021 gtagagcgtt aaaccaccgg cattttgagc aagcgcctga cctattccca gcacattgcc
     4081 gtggccgaaa atagcggcaa caccgtgaac gaatttaatc tctttgccgt ccacgtctaa
     4141 atattgatta tccaaaaatt gcactaacgc ctgtgcaacc gttaaacgag tagtctgcat
     4201 aaagcctcct ctggcttaca tcgcttttgc aagcggtcgg ttttctactg atttttacaa
     4261 atgaaaaatt tatttcattt ataatagcaa ggaaatcgaa aaaaagatgt gatccagttc
     4321 tcatttctgc gaagttattg ccttattttt caaagtgaga gctagatcac agaaatgata
     4381 atttaaatag aataaatttg aaataaaaat ttcatttttg tatgatgtat agtgtgtatt
     4441 caaatttact tgttgtaagg agcggttatg gcaacagtta atcatcaaga tcgtccattg
     4501 gatcttatct gtttagggcg tgtggcggtg gacttttatg ggcaacaaat cggttcccgt
     4561 ttggaagaga tgaccacatt ttcaaaatac ctcggcggct cgtcaggcaa tgtggcttac
     4621 ggtacggcgg tgcaaggttt acgttcttca atgctggcaa gggtcggtga cgaacatatg
     4681 gggcgttttc tacgtgaaga gctacaaagc gtaggcgtgg acaccagcca tttaattacc
     4741 gataaagaac gcttaactgc actggttatt ctcggcatta aagataaaga gacttttccg
     4801 ctgattttct atcgtgataa ctgtgcggat atggcaatca ccaaagacga ttttagcgaa
     4861 gcctatattg cttccagccg ttgcttagca attaccggca cgcacctgtc aaaccctaaa
     4921 acccgtgaag ctgtgctgac cgcactcgaa tatgcgggta gaaatgaggt aaaacgagcg
     4981 ttagatattg attatcgccc tgtgttatgg ggattaacct cactcggtga tggcgaaacc
     5041 cgttatatag acagtgccga agtcaccaaa tcgctacaag aagtattgca ccatttcgat
     5101 ctgattgtcg gcacagagga agaatttcat atcgcaggcg gttcgaccga tactctcact
     5161 gcactcaaaa atgtgcgtaa agtctctaat gccgtattag tgtgcaaacg tggggcatta
     5221 gggtgttcag tatttgaagg cgagctgccg aatgatttag acggtggctt gaatgtgtac
     5281 ggcgtgcgtg tagaagtgct gaatgtgctg ggtgcaggcg atgcttttat gtcgggctta
     5341 ctgcgtggct acttaaataa cgaaggttgg gaacaagcgt gccactatgc caatgcgtgc
     5401 ggagcgttag tggtatctcg tcacggctgt tcaccggcaa tgccgaccaa acgtgaactt
     5461 gacgattatt taacccgtgc agagagtgta ccacgtccgg atttagatga gcgtttaaac
     5521 cacttacacc gtgtcaccac ccgcaaaaaa cagtgggaaa atctctgtat ttttgctttt
     5581 gatcaccgca aacagttggt ggatatggca aataaagtcg gtgcagatct tgctcgcata
     5641 ccgaaactga aacagctgct attaaaagcg atggaacaaa ccgcaactca atccggctta
     5701 ccacaaaatc aagcagggat cctagccgat accactttcg ggcaagatgt acttaatgag
     5761 attaccggca aagattactg gattgcccgc ccgattgaag agccgtcttc ccgcccgctg
     5821 gaattagagt atggagattt aggctctcag ctagcatcat tcccacgcga tcacgtcatc
     5881 aaatgcttgg cattttacca cccgaatgat gaaagcggtt taaaagcccg ccaagatcgc
     5941 aagttaaaag aggtgtatca agcctgttgc cgtaccggtc acgagctatt gttggaaatt
     6001 attctgcctg ctgatatgcc acagagtgag gctttctata accaagcgat agcacatttc
     6061 taccaacttg gcattaagcc ggaatggtgg aaattgccgg atgtttctcg cgcacaatgg
     6121 caagcgattt ccgccaccat tgaggcaaac gatccggact gtcgtggtat tttaatttta
     6181 ggtttagatg ccccgttaga ggtgtttaaa gacacctttg aacaggcaaa aggctgtgag
     6241 aaagtgaaag gctttgcagt cggccgcacc attttcggtg aaccgtccga aaaatggctt
     6301 gccggtgaat tggacgacaa taccttgatt tctgcggtat cggagaaata tcgcacttta
     6361 atcgatctct ggcaacaacg ttaatcatat tgctttaagt gaaaacccct tagcttatga
     6421 tattaagcaa ggggttttgt tttgcaaaaa atccggctaa acagaccgct tgctagccgt
     6481 aaaaatgccc gaattttcct aaaaaagcga atatcgggca ttcctcaatc tgcttatcac
     6541 aaaataagtg tgatgaagtt cacatttcat acataaaccc cccccttttt atcgaaacaa
     6601 attgttttat ttttatcaaa atggaaaatg tatttcagtt tagttctatt tagattcaat
     6661 aggagtctgt gtatgagttg caacacttca ccaaaacgtt tccacgccag ttgggagtcg
     6721 atcaaacagc accaagtacc agagtggtat gaagatgcta agtttgggat ttttattcac
     6781 tgggggattt actccgtacc cgcctttgcc ccaccgacct gtcagttagg tgaaattgat
     6841 attgatgaac agtggttctg taataaccct tatgcagaat ggtattttaa ttccatcaat
     6901 gtcaaaaaag gcccgaccta cgaacatcat atcaaaactt atggcgaatc ctttgcctat
     6961 aacgacttcc tgccactatg gaaagcggaa aaatggcaac cagcagaatg ggcgaaactg
     7021 tttgccaaag ctggcgccaa atatgtggta ttaaccacca aacatcacga tggtttctgt
     7081 ctctatccaa gtaaatatac cgatttcaac tgtatgcaag ccggaccgaa gcgggattta
     7141 atgggcgagc tgactgaaaa tgtgcgggag caaggcttaa aaatgggcgc ttactactcg
     7201 ggcattatcg attggactta ttcctctgcc ccgattttca ccgaaagtca aaacttctca
     7261 aacgcttgcc cgacttacga atacgctgac tacgcctata aacaagtggt agagctgatc
     7321 gaccgctata aaccagatgt attgtggaat gatattggct ggccaaaagt gggcgagcat
     7381 atgttaccac acctatttgc tcattattac aacagcgttc aagagggcgt agtggacgac
     7441 cgctggaaca aactatggtg cgatttcacc tccaaagaat acaaacacgg cgtggcttcc
     7501 cgtgataaga aatgggaaat gtgccgtggt atgggcttat cgttcggcta taaccaggta
     7561 gaagacgaaa gccatttgat ttcggtgaaa gacttgattt ccctattggt agaaaccgta
     7621 gccgacaacg gcaatttatt gctgaatatc ggcccgaaag cagatggcac tattccgcaa
     7681 gagcaagttg aacgcttatt agcactgggg agctggctgg aaataaatgg agagggaatc
     7741 tataaatccc gttgtagcca acaccaaacc gagcaaatcg gtgatgtaac ctatcgttat
     7801 accaaagttg gggcggatct ctatctttac attgatggct taaccgaagc ccaaatcagc
     7861 ttgccactgt cagtttatgg tgagctacaa gcactcaata ccgagctgaa atttaccatt
     7921 gaaaacaccg cacaaggcag agtgttacat attcaaaact accagccgga ttggtatgta
     7981 ttaggcttta aaattgcaga tggggagaaa taggtatgtc cgtttcacaa cgttttattg
     8041 actttatgaa tgcccacgtt gctccagtag cacgtcgaat ggaaaatcaa ccgcatattt
     8101 ccgctattcg agacggtttt attgtagtgt taccattctt aattgtcggc agctttatta
     8161 tgattttgct aattccgcca tttgatgaaa atacccaaaa tgctttcggg caagcttggt
     8221 ggcgttttgc gaattgggca agcccttacg gttggaattt cttccaaatg tcgtttaatg
     8281 cgatttcatt atttacctct gccagtatcg cctacaacct tgccaaagcc tataaaagag
     8341 agcccctgcc agcggcattt ctctcggtaa tggcattttt gttagtggct gcaccggtca
     8401 aagacggaat gatggatatt aaattctttg gcggtattgg gctattctct gcgattttta
     8461 ttgccattta ttcggtagaa atgacccgct tgttggagtt cttaaaaatt aaaatccgct
     8521 taccgaaaga agtgccgcac gctgtagcag aatctctgaa tatcgtgatt ccaattttag
     8581 cgattttact gactctctat ccgtttgcca tttgggtgga aagtgccaca ggtcgtaata
     8641 ttccacaact aattatggac tttatggcgc cattgattgc tgtgagtgac tcgctagggg
     8701 caatttgctt gttcgttatt gctacccatt tgctctggtt cttaggcatt aacggctcat
     8761 tggtactaat gcaactttgg acaccattcc tactgcaaaa tatggcggca aacttagcag
     8821 cattccaagc tggtgaaccg ctccccttta tcatcaccaa ttccttctgg gatttctata
     8881 tcgtacacgg ggcaagtggt ggtgtaatag ccttggcatt cctgctggta cgcagtaaat
     8941 cggcacactt acgctctatc ggtaaaatcg gcttggttcc gtccttcttc tctatcggtg
     9001 aaccaattgt gtatggtgtg ccaatggtgg ttaatccgct gttctttatc ccgctgattt
     9061 tcgcaccact agcgaatgcg gttattgcct acctgatttt agattttaac cttattcacc
     9121 gtgtttactt gatggcaccg tggacaacac cggcaccgat tggggcatat ctggtttctg
     9181 ccggtgatat ttgggcacca attttaagta ttgcactgat tattttggat attgtgatct
     9241 actatccatt cttcaaaatg tatgaaaaag tctgcgtcga gaaagaaaaa gcacaaaatc
     9301 tagatgaaaa agcacaacag gagttgctag aaaaagcacg aatggcagca caataacact
     9361 tatttctagc gtaattgaga ggggctaatc gaaagattag cccttatttt tgcaaaaaat
     9421 tgacaaaatt tatccgcttg taaacaagaa aagcgtataa tgaaataaaa aattcaagca
     9481 gagataattt gaaatgaatg gacctactca attagcacat tttcaagaac aaatccgaaa
     9541 agagtatgac ggactaagta aacgtttaaa acaagtggca cagtatgtgc tggataatgg
     9601 caacagcgtg gtgtttgata cggtttctac cattgctgaa cgagctgatg ttcccccttc
     9661 aaccttaatc cgttttgcga atgcgtttgg atttagcggt tttaatgaaa ttaaacagct
     9721 ttatcgccaa gatatgatgg aaggcacatc acgttacacc gaacgtgtgc aactttttcg
     9781 tcaaattgaa ccgcttgatg agcaaaacag tgagctcaat catattttag atgtgttcgt
     9841 acagggtaat acgcaggcac tgcaacagtt atcgacacaa gtcagcgaag agcagttagc
     9901 acaaacggta gatattttac acaatgccaa acgcattttt attgtgggtt taaaacgctc
     9961 attcagcatt gcgaactacc taaactatgc gttgcaccat ttggactatg atgtctttat
    10021 gatcgatggt tcgggcggta tgtttgacga gcaattaagc cgaatccgtg aaggtgatgc
    10081 ggtgattgcc gtgagctttt ccccgtatgc gaatgaaaca ctcaacgtgg tgacagcaac
    10141 tgccagaccg ggggtaaaac atattgcgat cactgatagc caacttagcc cactcctttc
    10201 atttagcgat gtgtcgttta ttattaaaga agcacaggtg agtggttttc gatcccagtg
    10261 tgccacaatg acgctcgcac aaacgattgc cgtttcactg gcgttgaaaa aagcctagat
    10321 taagaaagtg aaagacctgc gtaaatacag gtctttgtct attaaccgat taaagcgtta
    10381 atttcatcac gatactgccc ggcttttgca ccaaaaataa tttgttgcgt atcaccgact
    10441 ttaatgacat caaccgcccc aagctttttc agtgccgact tatttaataa accgttgtta
    10501 tgtaacacca cacgtaaacg ggttaaacaa gcttcaactt gcttgatatt ctctttgttt
    10561 cctaaagcat taataatttc tagaatgata gatttatcag acatatttcc tccataccta
    10621 tttatattta aaactcttat tatgatattt taaacatttt ctgatggtta gaacaatttt
    10681 tattagtaat ttgtataaaa aaacgctaaa tgtatctttc tttaaaagag tcatatcaat
    10741 gaatctccct tgtctttccg caaaaaatct gtataatttg accgcttgtt ttctcttttg
    10801 aaacaagttc gttaccctca cctcgaacga gggtttattt tttactatca acatttagag
    10861 gaaaggttat ggtaaccatt cgtttaactc gtggcggagc taaaaaacgc ccattttacc
    10921 aaatcgtggt agtggacagc cgttcacctc gtgatggtcg ctttatcgag cgtatcggtt
    10981 tcttcaaccc attagcagca ggtcaagctg agcgtttacg cttagatgtg gctaaagtag
    11041 atgcttgggt tgctaaaggt gctgatttat cagaccgtgt tgcttcttta gtaaaagaag
    11101 ctcgcaaagc agcttaattt ttaagccaaa attaaataag taggtgagta tgagcgaaca
    11161 aaagatcgaa gttgtcggaa aattaggttc aacctatggt atccgtggtt ggttgcgtct
    11221 ctattcatcg acagaacaaa ctgagagcat tttcgactac cagccgtggt ttttaaaaat
    11281 taaaggtcag tggcagcagg tcgaattaga aagctggcgt tatcatagca atgatttgat
    11341 tgttaaattg aaaggcactg aagaccgtga agccgcacag ttattaacca acgctgaaat
    11401 tggcgtggat ttgtctgtgt ttcctgaatt ggaagaggga gattactatt ggcacgattt
    11461 gatcggctgt tcggtagtaa acttagaggg ctacacaatg ggaacagttg ccgaaatgat
    11521 ggaaacaggt tcaaatgatg tgcttgtggt gcgtaataac ggcaaagatg ctttcggtaa
    11581 acaagaacga ttaattccgt ttttgtatga acaagtagtt aaaagagtag atctcgccac
    11641 caaaaccatt acggtggagt gggacgctgg tttctaacct caggtatgcg gtgagctttg
    11701 gaaaacattt aaggcgttaa aatgtggatt ggtattattt cactgtttcc tgaaatgttt
    11761 aaagcaatta ccgatttcgg ggtgacagga cgtgcagtta aacaaaatct actgcaagtt
    11821 gaatgttgga atcctcgtga ttttacattc gataaacata aaactgtaga tgatcgccct
    11881 tatggcggtg gtccgggaat gttgatgatg gtgcaacctt tgcgtgatgc gattcacgca
    11941 gcgaaaaagg cggcattagc agtagaaggc ggtgaagcta aagtgattta tctttcgccg
    12001 caaggacgta aactcgatca aaacggtgtg caaacactgg cttcaaatca gaaactgatt
    12061 ttaatttgtg gacgatatga aggcgtggac gagcgattga ttcaaacaga agttgatgaa
    12121 gaatggtcaa tcggtgatta cgttctcaca gggggggaat tacctgcaat gacattaatt
    12181 gatgcagttg caaggtttgt tcccggggta ttaggcaaac aggcttccgc gttagaggat
    12241 tctttcgcag agggattatt agattgccca cattataccc gccctgaagt attagacggt
    12301 atgcctgttc cggaagtgct gatgtctgga caccatgaac aaattcgtaa atggcggttg
    12361 gaacaatcgc tggaacgaac gtggttaaga cgccctgagc tattggatag cctagctctg
    12421 actgacgaac agcgtgtgtt gttagctaaa attaaaaaac agcacaaaat cagttaattc
    12481 taggattata gaaggttttt aaaatgagta acatcatcaa acaacttgaa caagaacagt
    12541 taaaacaaga cttacctagc ttccgtccgg gtgacacatt agaagttaag gtatgggtag
    12601 tagaaggtag taaaaaacgt ttgcaagcgt tcgaaggcgt ggttattgca attcgtaacc
    12661 gtggcttgca ctctgcattc actctacgta aagtttcaaa tggcgtaggc gttgagcgtg
    12721 tattccaaac tcactcacct gtaattgaca gcatttctgt taaacgtaaa ggtgcggtac
    12781 gtaaagctaa actttactac ttacgtgagc gttctggtaa atctgcacgt atcaaagagc
    12841 gtcttggcga ctaattgcta caaaacagtg aaatgcacaa aagccttgag gaaactcaag
    12901 gcttttgctt tttgtactta caagcagtta tttttcctca atgatttaca aatcttgctt
    12961 tcttttttgt tataatgtta acaagataac attaatgata ggtgtcgata tgaaacaatt
    13021 aagtattaga ttgccagacg atgaatttac ttttattaaa acatttgctt ctgctcataa
    13081 actgacttta caaaattttg tgatgtccgc aatccaagct aaagttgcag aaatgtctgc
    13141 taaaaataaa atatctgaag aaagtaacat tcatcaacct ctttctaaag atgaaaaaat
    13201 aatgctaaat gaggcaaaag tattttattc tgctcgttcg catttaaagg cagaaaatgt
    13261 gattcttccg agtgatttta tggagcaaat taaatcaggc tgtggagcag aaaaaatggc
    13321 agaaatgatg ggatatacca aagaagattg ggagtcaatg aagtaatatg gggcagatta
    13381 catttagtaa tattttcaca aaagtgattt ttgagaatgt gctttctgct tcaactaaag
    13441 agaaaataaa acaaatgctt tttcagtctg tggttgcatt acctcctctc cattcagaaa
    13501 gaaaaatgat tttacagttg aaaaagcaaa aaattaccat tttttatcaa gttattgagg
    13561 aacaatctgt gcaaatcctc gcttatcaat ttggtggaac tgataaattg acaggtgtgt
    13621 ctaaagctca ctttaaaaca ctagatgcca tttttcaaat gacggatgaa gagaaagaag
    13681 gaaaattcta atgtaagcgg ttatttttcc atattttttt gcaaataacg tttctcaaat
    13741 tttgcttgat ggcgttcaag cacttccgtc atcgaaatgc catatttatc ggctaataca
    13801 aaaagattat ccatcacatc gcctaactct tcgattaagt tatctcgttt ttgctgttgt
    13861 gaagcttcgg tttcgtccgg tcgttcacgc ccgatttcaa tcgctcttac tgcacaagcc
    13921 acttcgccga tttcttctgc tagataagtc acccgcataa aagggcttcg ttcataccaa
    13981 ccttgttgtt ggtaaaactg gcgaacccat tgttgatatt gttcaatttg cattttattt
    14041 ctgattcaaa aagtagggac gaaaaatttt tcgccctttt ataagaaaat gtatcagggc
    14101 aaatgatgat ttgcccctag gagtgttact ctgcctcaga gagaataatc cagccactat
    14161 ccagccagtc gcaaatggtg tctagcatta gctccagctc cgcttggtct tgcactttgg
    14221 aggcaagttt gttccacgaa atcgaatctc cattggcgat acgaatcagt aatgccattt
    14281 ctgcttcgtt taactcatca atccactcgc catttacata aacccgttga gggttctcgg
    14341 tgtagaggat ttttacattt gcatcttgct gtaaccagcc gccggcttcg agaatttctt
    14401 gcacttcgtc agggtaatat tcattgtcag tttgcaataa ttcataacgg cgggagcttg
    14461 ccgcagtggc aacactgtga gtgagtaact catcgaactg ttcggaattt tggagcaagt
    14521 cgattaactg atgtttaaac attttcacca ttttcggatc aagcaacgca ttcggctgtt
    14581 cattcggcgt taagcggaac ggaagatgaa attccgatga attaatgttg tcggcttgtt
    14641 gttcgatggt tttgcagaga ttttccagta aatcggtcgc atttggataa cgtaaaccaa
    14701 aagagaaagt taaaccttgc tcgctttcgg aaacaccata gtgagccatt cgagacggca
    14761 cataaagcac atcacccggg ttcattacct cgtccattac cagttcgccc atatcatcaa
    14821 aaatgcggat cggttggttt ggtttgaatt cggtgcttgg atcgcaccat ttgcctaatt
    14881 gccaacgacg ttgcccatag ccttgcacca agaacacatc gtactcatca taatgtttgc
    14941 cgacagtgcc gttgagcggt gagcaagaaa ccataatgtc atcacgttgc cattgcggga
    15001 taaaaccaaa agcctgccaa agctcgccta gctcaggaga ccattgctcg aggttttgca
    15061 ccattacaga ccattgtaca ggtaactctt ccaaatcttc ctcaacaagc gggctggatt
    15121 taacagacca tttctcgttt tcgcattgaa tcaggcgtgc agtgacttct tcctctaatg
    15181 ccagttctaa aatatcttcc ggctcaaaca atccgacaat ttggggtaag ccgttacgaa
    15241 ttaatagcgg tcgtttttgc caatattctc gcaaaaaggt ttcagggctg atattttcag
    15301 gtaagcagaa tggaatgttc ataatggctc cttgctacgt gcttctttga gattactgat
    15361 attctacccg agaaatcagg aaaaacggga aattttttat gatttagcga catcattcac
    15421 attttgaaga ggaaataatg aaaaaggcga acattgttcg cctttgaaat ttattttaaa
    15481 ccgagttttt tctcgagata gtggatattg gtgccacctt tgcggaattc tttatccgca
    15541 agaatttgag tatgtaaagg aatattggtt ttaatgcctt ccacaatggt ttcggaaagg
    15601 gcattttcca tccggcgaat cgcaatatca cgattttcag caaaggtaat caatttacca
    15661 atcattgaat cgtaatgtgg cggcacgcta tagcctgagt aaatatgtga atcccaacgc
    15721 acacctaaac cacccggaac gtgtaaacgg gtaattttac ccggcgatgg caagaaggtg
    15781 tttggatctt ctgcgttgat acggcactca atggcgtgac ctttcacttt aatatcatct
    15841 tgtgtgatcg aaagtggtaa gccggctgcc acacgcagtt gctcttttac caagtccaca
    15901 ccggtaatca tttcggttac agggtgttct acctgtaagc gggtgttcat ttcaatgaag
    15961 taaaactcgc cgttttcata taagaactca aaagtacctg caccacggta gccaatttca
    16021 cggcaggcat tggcacaacg ctccccaata aattgacgca attcaggtgt aataccctga
    16081 gcaggtgctt cttccaccac tttttggtgg cgacgttgca ttgaacagtc acgctctgct
    16141 aaataaaccg cattaccgtg agtatcggca agtacttgga tttcaatatg gcgtggattt
    16201 tctaaatatt tctccatata caccatatcg ttattaaatg ccgctttcgc ttcggctttc
    16261 gtcattgcga tagattcttc caaatctttc tcgtgatgaa ccacacgcat accacgaccg
    16321 ccaccaccac ctgatgcttt gatgatcacc gggtagccga tacgtttagc gatttcttta
    16381 tttttcttcg gatcgttacc aaccggaccg tcagaacccg gtacgcaagg cacgccggct
    16441 tttttcattg cattgatagc agagacttta tcgcccatta agcgaatcac atcagccgtt
    16501 ggaccaataa agataaagcc tgatttctca acttgttcgg caaagtttgc gttttcagat
    16561 aagaaaccgt agcccggatg aatagcatcg gcattcgtta cttcggcagc ggcaataatc
    16621 atcgggatat ttaaatagct ttttaccgat ggagcaggac cgatacaaat ggtttcatcg
    16681 gctaatttaa cgtgttttaa ttcacggtcg gcagttgaat gcactgcaac cgttttaatg
    16741 cccaattctt tacaagcacg caaaatacgc agggcaattt caccacggtt tgcgataaca
    16801 actttttcta acatagggaa attccttgtg ttctagaaaa tgtagggcgt gttgcacacg
    16861 cccgttggat aatttaagga agagcttatt caatgatgaa taatttttgg tcgaattcta
    16921 ccggttcgcc atcattaact aagatttctt ttaccacacc ggctttgtct gactcgatac
    16981 ggttcatcat tttcattgct tctacaatac ataacgtatc accgattttc acggtttgac
    17041 ccacttcaac gaacggtttt gcatctgggc ttgggctacg gtagaaagtc cccaccattg
    17101 gtgaaagcac tgcgtggcca ctcgtttctg cggcttttgg tgcttcagcc ggagctgcaa
    17161 caggtactgt cgaagctact tgaggtgccg ctggtgcaac aacaggagct gctgcatatt
    17221 gaactgcagc tggtgcaaca gctggagcag cacggctaat acgcaccgta ccttcttctt
    17281 cagacacttc taactcggta atgccagatt cttcaactaa ttcaataagt tttttgattt
    17341 tgcgaatatc cataataaga ttccgtatgt gattaaataa aataaaaaag agaactccac
    17401 atttggggta taaattcaaa tgtagagtta aaaaatgctg ggcgtagaat acctgaattt
    17461 cgctaatttt gcgaataaaa tctgataatt ttggcgaaaa tggacgattt tagcattcat
    17521 cgtaccagtt aggatttttg gaaaatggtg actcacaagc gattgaaaat tgccaatttt
    17581 ttgtaaaaaa caaccgcttg tcagattatt tcaataaatc ttcatttttc ttgtaattcc
    17641 acttgctacc gggcttgtcg atatactgaa aatattcgtt ggtaaaagta ccttgagcac
    17701 aagttacttt gtctcggcgg aaatttactt ctttatcacc aatggcatta tttagggtgt
    17761 caggaccggt cataacaaac acgccacctt caatccgacg attctcaata ttgctgataa
    17821 tcagctcaag ggtgtctttt agaatccaat ttccagcttc cgaagccaag aaaaagttgg
    17881 tgtatttatc acggcgttta attaacactt cgctatcatt ttcgccaata attttagaga
    17941 gtgggtaaac caaatgcccg tcaatatcaa tataaatgcc accttctcgg agcaaagtaa
    18001 aaattcgcca aaaatcagct tgtgccgcac catcggttaa tttgctatag gcgttaaagg
    18061 tgcgttcatc ggcgttggcc ttgatgtatg cctctcgttc ttctgtgcta acgtagcgat
    18121 aatcgtagct caatgacatt aggcggttaa acagataatt cgcatacatt ggcaaggtga
    18181 ctttgttaga ataattcgtt tgccaaatgg ttttggtaat tttgctcgga atgcttgatt
    18241 ggatttttgc cgggctatat tccggaatgg tgaaacgttt tttcggaaaa agtgcatgga
    18301 acggataact caatattttg acgatattac cgaataaacg gaagactccg ttacagatca
    18361 caataaattg ttcattttta acagccattt tattacctta tgcttttaag tgtgaaattg
    18421 caaaatccaa cgcatattca tagccttttg cccctaaacc gcaaataacg ccttttgcaa
    18481 tatcacttag ataggagtga tggcgaaaag gttcacggct atgaacgtta gacaaatgca
    18541 cctcaacaaa cggaatcgac acactcaata acgcatcacg aattgccacg ctggtgtgag
    18601 taaatgcccc ggggttaata ataataaaat cggtatgctg aaaggcttgg tgaatacggt
    18661 tgataatcgg ctcttcaccg ttggcttgaa agctctccag ctcaacatct tgggccgcag
    18721 ccaatttttt taagtggttt tcaatatccg ccaaagtttg cgaaccgtaa atttgtggct
    18781 cacgtttgcc caacatattt aaattcgggc cgttaaggag aaggattttt ttcatattta
    18841 cttattcaac ttgtaattca taattaagcc attcacggtt ttctttcgcc cccaagcgtt
    18901 gataaaaacg aataccaccg tcattccaag gattttattg tcttacaatg atgtgccttc
    18961 gcctcatttt tcaaggcttg cattaacgcc tctcccactt tctgattccg agcagtttca
    19021 tcaacataaa gctctttcat ataaatagcg gggcggtttt gggcagtgta aggaagaaaa
    19081 taataaacca atatgccgat aatgttagac gcattttcag ccactaaaca gtaaaaatcg
    19141 ggtgggcttt tgcgaaagcc ggattccatt acaacttcag gagtaatcgc aaaagaatcg
    19201 atatagtgct caaacacagc cagtttttgc atcagaggga acacttggtg ggtatcttgt
    19261 tcgaccattt tgcggattgt aaatgccata aaattcctta caagcggtaa aaaaatccct
    19321 cacttttgca aagcgaggga ggttttaatt attcgtcaat agaacgtaat aagtcgttta
    19381 agcccacttt gcttaaggtt ttctcatcca cttttttcac aatcaccgca cagtagaggt
    19441 tgtgtgaacc atcttttgat ggaagcgagc ctgaaaccac aacagagcct gccggcacac
    19501 ggccgtaatg tacttcgccg gtttcacggt cgtaaatttt ggtagattga ccgataaaca
    19561 cgcccattga gatcacgcag ttatcttcga caatcacgcc ttctacgatt tcagaacgtg
    19621 caccgataaa gcagttgtcg ccgatgatgg ttgggttcgc ttgtaatggc tctaacacac
    19681 caccgatgcc cacgccacca gaaaggtgaa catttttacc gatttgcgca caagaaccca
    19741 ctgttaccca agtgtccacc attgtgcctt cgccaacgta tgcaccgatg ttcacgaaag
    19801 atggcattaa caccacgttt ttctcgatat gtgaaccttt acgcaccacc gcacccggca
    19861 cggcacgaat gccatctgct ttgaattgct cttcggtgta gttgccgtat ttggttggca
    19921 ctttgtcgta gaatttggtt tctgcaccgt cgatgatttc attgtcggca atacggaatg
    19981 aaagtaatac cgcttttttc acccattggt ttactaccca ctcgccatct tttttctcgg
    20041 caacacgcag tgaaccgttg tctaatcctg cgatcacctc ttctactgct gctttggttt
    20101 cagcatcaac ggttttcgga gtaatttccg cacggcgttc aaatgccgct tcaataatag
    20161 cttgtaaaga cattgttgtg ttccttcaat atataaatta aaacagaaaa ttcggctcac
    20221 tttttaacat agaaaggcgt ttatttccac aagaaaaaac atatcgcaga aatttagttt
    20281 ataattccaa gccacttatt tgatacaagc ggtgattttt gtggaaaatt ttgcaaatct
    20341 gcttaccggt aaaacgcgtg agcatttagt gccgttgccg aacgctcttt cggataaaca
    20401 ttaccttcag cctcaggtgg ttgaggcttt tttgacgttg cagcatgctg caaaacaagc
    20461 cggctttaat ttacagcctg ccagtacttt tcgtgatttt gaacgccaaa aagggatttg
    20521 gaatgcgaag tttaggggtg agcgtaaggt tcacgatgat aacggggttg cgattgatat
    20581 ggcggcgtta tcggatcttg aaaagtgcaa agcaatgttg agatggtctg cggtgccggg
    20641 ggcaagtcgg catcattggg gaacggaaat tgatattttt gaccctgatt tattgccgga
    20701 aaatacgcct ttattgcttg agccgtggga atatttggaa ggtggctatt ttgccgattt
    20761 aaccaagtgg ttacacgtta atgcggaaac atttggcttt tatttcccgt ttgacggtaa
    20821 acattctcga gtgggctttg agccgtggca cattagctat cgcccgattt caaatgaata
    20881 tgagcaacgc tttaacgatg aaatcttaaa agctgcgtgg caagatgaag aagtggcggg
    20941 taaggaatgc ttacttgaac attttgaaga attactaaaa tgatccaatt aattaacgaa
    21001 acccaacaac acgacaaatt ccgccaaatt tgcgacaaat ggcagctggt tgaagataaa
    21061 tccagcccgt tagccttagt gctaacggag gaacgattgg aactacgcaa attagacgaa
    21121 cccaagctcg gggcgattgc agtgaatttt gtggacggta cgatggcaca tcggcgtaaa
    21181 ttcggtggtg ggcgaggtga agccgttgcg aaagcggtcg gcattaaagg ggattatttg
    21241 ccaactgtga ttgatgcgac agccggttta gggcgagatg cttttgtatt agcagcggtt
    21301 ggttgtaaag tgctgttagt ggaacgcaat ccaattgtcg ctgccttgtt ggaagatggt
    21361 ttaaaccgag cttatcaaga tgtggaaatc ggcagtttta tgcaagaaag aatgatctta
    21421 gccgatgttc gagacatttc tcagctagat ccacaatccc aaatggctga ggtagtgtat
    21481 ttagatccga tgtatccgca caaacaaaaa agtgcgttgg tgaaaaaaga aatgcgggtg
    21541 tttcaacatt tagttggggc agatttagat tcggacagct ttttcttacc ggcaaaagga
    21601 ttggcaaaaa aacgtgtggt agtgaagcgt ccggactatg ccccgttttt agcggagcaa
    21661 aagcctgatt tttcacacac caccaaaaat caccgttttg atgtttatct ttctcacctg
    21721 aaaaatgatt aaaggtgggt catgcgatag gcaagcggtt atttttacag taaaatttac
    21781 aaattatgtt atcgtttatt tatatttaaa aaggcggtta tcgtgccaca acgtgattat
    21841 gtcgctcgtt ccaacgagaa aaaaagtaaa aaaaatcaaa aagaaagtaa tgttaaaaag
    21901 attttaatgc ggattatcgg ggtaatttta ttcttcggta ttggtttatg gtttttgaaa
    21961 tccagtgcac ctgtaccaac agttccgtca gcaccgcagc ctgctaattc acagactaaa
    22021 agcgaattac caagtcgacc ggaagagacg tggagctata ttcgtgattt agaaacccgt
    22081 acggtaatta ccgataatag ccaaacttca caagaacgtt tggcacaatt aacggcggaa
    22141 caaaagcagc aaattgaaga aagacgcaaa caagaagaag cacgcttagc cgctgagcaa
    22201 gctcaacaaa agcctgcgac cgatgtatct gctacagaat tggctccgaa aacagaggaa
    22261 gttaagtcgt taacggaaga agaattagca gcaaaaaaag cacaggagca agctttagca
    22321 caaaagcaag cggaagagaa acgcagacaa gcagagctta aaaaacagca ggaagcgaaa
    22381 aaagagcagc cggctaaaat tgtagcaagt gctgcaacac tggcagataa agctgcaaat
    22441 caggcgggta aatttgggtt acagtgcggt gcatttaaaa ataaagccca agccgaaaat
    22501 atgcaagcaa gattggcaat ggcaggtttt aacgcccgta tcgcaagcag tgccgattgg
    22561 aaccgtgttt ttgtcggccc gataggtgac agagcggcaa cttccagagc tcaatccaat
    22621 gcacgcagtg tagcggaatg tgtgattgtg gcgatgtaaa attgattgaa atattgaaga
    22681 gagctatagg ctctcttttt ttatatccca atcgcatatt tcaaggcttg ctttttgatg
    22741 ggtgacactt tatcagccaa tactaaaccg acattgcggg caattttgag cggtaataaa
    22801 tcggtcttaa acgctttata aaacacgtcc atgcctgttt gcatcagtaa attatccggt
    22861 ttacgttttt gctcatagcg ttgaagcacc tgctcacttg caaaattttt gccttttttg
    22921 accgcttgtt cgatcacctc aagcaaggtt ttaacatctt taaagcctaa atttacacct
    22981 tgtccggcaa gcggattaat ggtgtgagcc gcatcgccga ctaataccac cccgttttgc
    23041 acatagtgct gagcgtgctg gcgggttagc gggaaagccc ctgaagcctg cacctgaatg
    23101 ttgcctaatt ctgcgttgag ccggcttggg aaatgttgct caatcgcaac tcccagcttt
    23161 tctgctggaa gcattttcag ttcggcaatt ttttgtggtg aatcgtacca aacaacgcag
    23221 ccgtgattgc cggaaagcgg taaaaaggct cgagggccgg ttggatagaa ttgttgccaa
    23281 gtgccgcttg gagcaggttt ttcggtggta acggtggcga gtaaacagtg ttggcgatat
    23341 tgccaagcgg ttaaaccaat gcccgcccat tggcgaacct gtgaatttgc accgtctgcg
    23401 gcaatcagca gtggggcagc aaaggtgttg ccatcaaccg tcacttccca atactcgccc
    23461 gctttatttg caaaaatttg ctcaaatccg accgcttgta ggcagtttgg atattgcttt
    23521 aattgctccc ataacgcaat ttgaataacg ttgttttcga ccatatcgcc gagcttttcc
    23581 aaacccaaat cagctgccga aaaaagagtg ttgaatccat caatttccca ggtttcgagc
    23641 tgggtataag gggtgcttct cattgcaaca atttgctccc acacgcccaa tttttctaac
    23701 agttgaatcg agcccatact aatggcggaa attcgcaaat cgtagtctga atcaggatta
    23761 aaggtcggca gagggttttt ctccaacaag gctaaacgca gcccctgttt tgctaagcct
    23821 agagctgttg ctgccccaat cataccgcca ccgattacaa tcatatctaa ttcagttttc
    23881 attttttctt cctttttagt taggcaaaat actgctaaaa cgccttgaat tgtagtgcat
    23941 ttcagattag gatcaaaccg atttatctat ttatctaagg agcgttttat gtcttgcaaa
    24001 actcatgcaa accacgagca cgaacacggc gaaggctgtg gtcatactgc tattaaacat
    24061 aacgaccata tcgactattt acacgatggg catttacacc acaacaaaca cggcgatcac
    24121 tatgacgaac acgttttaga agtgaatgaa accaacccgg cagactgtaa tgccgcccat
    24181 tgctgcggcg accacgttca tggtgaggtt tgcggacacg aagctgtgcc gcacggcgat
    24241 catatcgact acatcgtgaa tgggcgtttg caccaccaac acggcgacca ctgcgatgac
    24301 cacgggccgg ttgaaattgt gaaataagat ttttgatggg aggttttagc ctcccattat
    24361 tatttttgcg atctcgctcg aaaaattgaa cattcctgct acccctcttc cgattttcct
    24421 tttatgctct cggtattgat ttctaatacc gaaatgtgat gaccttagcg attgtttaca
    24481 gccgagcctc cattggcgtt gaagccccgt tggtgacgat tgaagtgcat attagcaacg
    24541 gacaaccaaa attaaccatt gtcggcttgc ccgaagccac agtgaaagag gctggtgatc
    24601 gtgtgcggag tgcgttgctg aacgctaatt ttatctatcc gccacaacgg atcacgatta
    24661 atcttgctcc ggcagattta cccaaagaag gcggacgttt tgacttgccg attgcgattg
    24721 gcattctggc agcctcaggg caaattgatt ctgatttatt aacgcagttc gagtttttgg
    24781 gcgagttggc actgacaggg catttgcgag gagtgcacgg cacgattccg gcagtgattt
    24841 ctgccgataa agccaaacgg cagatgatct tagccaagca aaatgcgaat gaggcatcgc
    24901 ttgtttccaa tgccaccacc tactttgccg gctcgttgtt ggaggtggta aatatgctca
    24961 acaaacggga taaactgccg atttgtcagc acatttcgca acattctgcc gaaattcgac
    25021 cgcttgtcag ccgagatctt actgatatta tcgggcaaca acacgccaag cgagccttaa
    25081 tgattgccgc tgccgggcaa cataatttgc tgtttctcgg accaccggga acgggtaaaa
    25141 caatgttggc aagccggctg gcggatttac tgccggaaat gaccgatgag gaggcgattg
    25201 aaaccgcctc ggtgaccagc cttgtgcaaa atgagctgaa ttttcagaac tggaaacaac
    25261 gcccgtttcg ttcgccccat cacagtgcat caatggtggc attagtggga ggtggctgtg
    25321 aaaactagaa ataaatgtca aaaacaagaa ataaatgtca caaatctttc tctaatttcg
    25381 ctataattcg atcatcaaaa ctttaagggg aaatccgtta tgttctacct caataacgac
    25441 aatttcaaac gagaacctta tcgtggatat tgtccgagtc accttgaaaa gctttttact
    25501 aaaccacacc ttgatattag aggtaacggt tattattacc ctgacaatga atatgttgta
    25561 gcttggtatg aatcggactt cattttcaaa tcaagaaaag ctcaagcaca tgcaaaagta
    25621 aagcttgtta atttaacttg ccccaaatac actggcaaaa acagtgctga atatttaagc
    25681 gttttgtata tctccgttcc ccttaattat ctacattatt tcactatcgg cagtatctgg
    25741 aaaggcggtg tcgccaaaga gcagtttgct ctcgaagaat tttacattac ggttgaagct
    25801 gaaaatcaag atggtaaacg agaaaacctc tcaatcgttt cattcggtga gagtgaggaa
    25861 aacggtttag agaaaccatt tgattacaca atctacacta tccccacaga atatcacaac
    25921 tacggtgatg acctaaaccg actactttcc atctcttacc aaaatcaaaa attcattatc
    25981 catccgctac atatttttat gatgcactac gggtactcta cggacatcaa gcgtatcttg
    26041 gcaacatacc cacttgacga ggtaagagaa cgcctattta tagataaggt cgttgagaat
    26101 tttgatgtag agcgttatgt cgttttaccg aaatactttg taaaaaaaga tgcgattttc
    26161 ctctatcact tcaaatatga cgaagagact acgggaacaa gggtaaaaaa gcttgtaagc
    26221 cagtttaggt taaatattca caatcaaaca catccaatag aaatagattt ttggcacacg
    26281 caaaaggttg aattgaaaat ccgtggtgtt cgacttggaa atgctgtgtt atgcgcagaa
    26341 attatcggtc ttaatcagcc cgaaggcgaa gatattacgc tagtgctatc tcaatcgaaa
    26401 agagaaaaat cgggtaataa aaccgaggaa caaaataacg aggtaaataa cgttcctatt
    26461 accagagttt atacacgaga acctgaattg gatgagttac cactcaccga taactcccca
    26521 gataatcgaa cagtcgaata caacaagcga caatttgaac tcttgggccg tcaacgccaa
    26581 atcagagcgc tcaagaaagc acgcgaagag agtaatcaga aaatgaaagc cttgactcca
    26641 gatgagatag actcactggg tgtaggtgaa tcagatggcc gaaacggtaa ggttggactc
    26701 gctttctgtt tccttgatga tacacctgtt ggcaaaagct ccaaactata caaattatgg
    26761 cagcacgcga aggctgttgc ggaatggaat cacggtgagg cgcactggta cacgcctaat
    26821 ctcggtttta gaaatgacga tgaactcctt cccgtttcct tagaaaccaa caaatgtttc
    26881 gactaccctg aaatcgcgat aattatccgc ctccaaatat acggagaaac atttttcctg
    26941 attgatttct caatgaagca aagagatata agcattcgtg gcttagggta taaacccgat
    27001 ccaaacgaag attttctcta tgaaagtgat atgagcaaaa gcgaattatc cgaattattg
    27061 tccgcagttc atcatcatga acatctgcca aaagagtaca tagagaaaaa gaacaaagaa
    27121 aaaaccaaac tcactacatt taaccatagc gaagccgaaa gtagtaactg ggcttataac
    27181 gcggtgcaaa aattaacttc aagggcaatt actaagccga catattttta attattttta
    27241 tgaatgcaga acaacgtgta attgttactc cgacattttg gggtaaattt tttggaaaaa
    27301 ttaaaagtgt tgaacttcaa caaaacaaag ttatcgtaac tgacaaaaag aataatataa
    27361 ctgaacatga tttaggaaaa acttttgact ttccagctat ccagaagtct ttctttggta
    27421 ctaaattatt ttttaaagac gatagcacag aagttgtttt atcaaaactt gcgaaaaaac
    27481 aaactgatag tctattactt gaaatcgaaa aagtagttgc atctaatatt aaagtgaaag
    27541 taaaagaggg ttttcaacac tttgcaaatt tagccgaaaa tcaatatctc agagattccg
    27601 acattcctac attaaatgat cgtgtaagat tgtcagtgct ttcctatggg gataacaaag
    27661 aacattttca aaaatacttt gatgaaagtt tggttaagaa aattcaatat atctcttcac
    27721 tttttcctgt aaatgccata aatgctcaaa caattcgaag agaatacgag caacatgttt
    27781 taaatcatcg caagcatttc tttgatgtca ttgaatctaa tccgcttact gagcaacaaa
    27841 gattgtcagt cattcggaac aacgacatca atatggttct tgctgccgcg gggacaggaa
    27901 aaacgtctgt aatggtcgca aaagcattgg acttaattga ttctggtgct tgtaaaagcg
    27961 aagatatttt gattcttgca tacaaccgcg atgcagcaac cgaactatcc gaacgcttac
    28021 aagaacgtgc acgagaagcc aatttagatc tggaaaatag ccctagcatc tcgactttcc
    28081 atgcgcttgg ccgaagaatt attaaagaat gtggaaaatc agtccacttg tcaaaatttg
    28141 ccgaagatcc gatgaaatta gatagatggt tcaacaaatg gctagaggac tacatcaaag
    28201 aagatcctga taatcttgca aaattcattc aacttgcata ccaacctatc gatccattcc
    28261 aattcaaaac gaaagacgaa tacgatagat atgtaaatga caatgactat cgaaccttac
    28321 aaggcgaacg cgttcgtggt tatcaagagt tattgatcgc gaactggctt tttagccaca
    28381 gcgtagaata tgagtatgaa ccaaggtatg tatcaaaacg ccgtatcgag attggttttg
    28441 actacaaacc cgatttctct ttgggtgatg gtgtttacct tgaacatttc ggcattgacc
    28501 gacaaggtag aactcgcgca gatattaacg cgcaggaata taatgccaat atccaaagaa
    28561 aacgtgagtt acacgccgaa cataatacaa cattactgga gacataccac tacaactggg
    28621 tggaaaatac gttatataaa cgactagagc aattgatgaa tgaacagttc attcctctga
    28681 agccaaaatc acaacaagag attttagatg cactcaatga atcaggaatc ttcaaagaaa
    28741 acaaaaatcg ctatttgaag tgccttcaag ctattcgtac agagcgatta gactatcaac
    28801 aaatcttaaa acgtctaacc gatgcgaaaa ttgtctatgc taaagaatat gcgacattgc
    28861 tcatgcgtat tcatgatgcc tacgttaaag aactacgtag cgcaaatgaa atcgactttg
    28921 acgatatgat tttgttggct actcaactgg tgaaaacagg tgagtttaaa cctaaatgga
    28981 aacatatttt agtcgatgaa tttcaagata tttctatggc tcgattggag ttattgaaag
    29041 aaatttatac taaagggcct cgaccgattt ggactgttgt tggagatgac tggcaatcaa
    29101 tctatcgttt ctctggcggt aaactagaag ttactacgcg atttaatgat atggtcggct
    29161 cacacacgct aagtaaacta gaaaaaacct accgctataa caatagtatt gctgacacag
    29221 caggtcaatt cattatgcaa aatcctgagc agtatcagaa aaatgttgta acgcatacaa
    29281 aggtcgctga ttcttgtgtt catttgtatg actctcatgt cgtaaaggat gaaaaatcag
    29341 aagccaatat cagtttaaaa gcctcagcaa tattaaaact gatacgtcaa aaagcacctg
    29401 aagccactgt cgcaattttg gctagatacc gttacctttt agaagatgca aaaagtgtaa
    29461 tcaaagataa gaatgttaaa ttttggacgt tccacggctc aaaagggttg gaagcagatt
    29521 actgcatttt acttggtttc ttccaaggaa aagtcggatt tcccaaccaa aataaagaag
    29581 aagccgttgt agaagcattg cttcctatgc tagacagttt tccacactca gaagaacgta
    29641 ggttatttta tgtggcatta acgcgtgcga aaaaagaaag ttatttgatc gcagatgcga
    29701 acgcgccatc agaatttatc aatgaattat tatcaccgaa atacaagata gatattgtgt
    29761 caaaacgatt ccaagaacgt tatcggacaa tctttaaatg taatgaatgt agcactggct
    29821 atttcgtgat gaaacaaggt aaatttggtc agttctattc ttgtacatca ggggaagtat
    29881 gccgctcttc gccacggatt tgtgaaaaat gtggccgtcc tatgaagctg cgagaaggta
    29941 aatttggtca gttttgggga tgctcaggat atggaatcaa aggcgatcaa tgtacgaat
//
LOCUS       DANLZD010000009        29558 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.009, whole genome shotgun sequence.
ACCESSION   DANLZD010000009 DANLZD010000000
VERSION     DANLZD010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 29558)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29558)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29558
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.009"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..198)
                     /locus_tag="PXE26_000276"
     CDS             complement(<1..198)
                     /locus_tag="PXE26_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592902.1"
                     /translation="MVSVDFKNNLLEFIFYGLFSEHTQTNIINGLQFYPKAGVAFRKD
                     LRFRKRAVYQREIMVFYQLDKI"
     gene            complement(191..403)
                     /locus_tag="PXE26_000277"
     CDS             complement(191..403)
                     /locus_tag="PXE26_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592903.1"
                     /translation="MSIVIVDTDFVVHKEDEEWTTEEIKMIEEHLLEEQSAQYQVKRE
                     VPKQFYADIAERLSRGDLTAWEQLDG"
     gene            590..3175
                     /gene="leuS"
                     /locus_tag="PXE26_000278"
     CDS             590..3175
                     /gene="leuS"
                     /locus_tag="PXE26_000278"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HDL5592904.1"
                     /translation="MQQQYNPSEIEPKVQRYWAENKVFKAVKDVTKEKYYCLSMLPYP
                     SGKLHMGHVRNYTIGDVVSRYQRMIGKNVLQPMGWDAFGLPAEGAAVKNNTAPAKWTY
                     ENIEYMKGQLKMLGFSYDWDREVTTCRPEYYKWEQWFFTELYKKGLVYKKTSTVNWCP
                     NDETVLANEQVHEGCCWRCDTPVEQREIPQWFIKITDYAEELLNQLDNLPQWPDQVKT
                     MQRNWIGRSEGVEITFKIAGSNVELPVYTTRPDTFFGVSYVAIAAAHPLAELAAQNNP
                     ALAEFIREAKNTKVAEAELATMEKKGMATGLFAIHPLTGKEVPVWVANFVLMHYGTGA
                     VMAVPAHDERDFEFAQKYDLQINQVIQPLDGSEWDFSKAAYTEHGKLINSAEFDGLEF
                     DVAFTAIADKLEAMGVGKRQVNFRLRDWGVSRQRYWGAPIPMMTTEEGEVVTVPLQDL
                     PVILPEDVVMNGVQSPIKADPEWAKTTYNGKPALRETDTFDTFMESSWYYARYTCPQY
                     HEGMLDSDEANYWLPVDQYIGGIEHATMHLLYFRFFHKLLRDAGILNSDEPATKLLCQ
                     GMVLADAFYYTSPTNERIWVSPTQVTLERDEKGRIIKATDPQGRELVHSGMTKMSKSK
                     NNGIDPQEMVEKYGADTVRLFMMFASPAEMTLEWQESGVEGAKRFLGRVWNLVYSYAQ
                     NPATTALDVNALDKDQKELRRDVHKTIAKVSDDIGRRQTFNTAIAAVMELMNKLTKAP
                     LETEQDKAVMAEALSAVVRMLYPITPHICFELWQVLGNEQTIDFAPWVQADESAMVED
                     EKLVVVQVNGKVRGKITVSATATEDEVKAIAKADPNVAKFLDGQQIVKEIYVPFKMLS
                     FAVKA"
     gene            3375..3863
                     /locus_tag="PXE26_000279"
     CDS             3375..3863
                     /locus_tag="PXE26_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592905.1"
                     /translation="MIKKLSLIAVFALTACGWHFKNNEVLPESFRTLTFESADQHSEM
                     SRILRNQLQLSDVKLVPSTANVAKLRLVSTSTDSKVVSVFKQAREAEKILTLNVDAIA
                     DIPNKGQYPLEVSVHRTFFDDSRAALAKSAEKEMIMKDMYEQASRQLIIKMAGLKKEL
                     SK"
     gene            3906..4931
                     /gene="holA"
                     /locus_tag="PXE26_000280"
     CDS             3906..4931
                     /gene="holA"
                     /locus_tag="PXE26_000280"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HDL5592906.1"
                     /translation="MQKIFPETLQFSLNKGLQPFYLLTGNDLLLVNETKDAIIHTARL
                     NGFDEKKEVEIKNDTNWEELFEAAQSMGLFFARQIMVLNFPDSPTATQFKKLAELCAF
                     IHSDLLFILHLPKFSKTMEKQAWFTQIELNLVQINCQTPELSKLPQWVSHRAKAMNLQ
                     IENEANQLLCYSYEGNLLALKQALQLLQLNATDGKITLTKAQEVVEHSAQFTPFQWID
                     ALFEGKIQRAQRILYHLQNEEVQAVVLLRIVQKELMILLEITRNPTAVVSSEQSLFIG
                     NLRTEFDRLKIWQNRRPFYNQITQRLTYQKLYALIQQLAELERKVKQEFSDDIWQELE
                     RFSAQFT"
     gene            complement(4932..5117)
                     /gene="yacG"
                     /locus_tag="PXE26_000281"
     CDS             complement(4932..5117)
                     /gene="yacG"
                     /locus_tag="PXE26_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HDL5592907.1"
                     /translation="MPETIVNCPTCEKEVVWSKESKYRPFCSERCQIIDLGDWAAEKH
                     SIASEEAELFSEDLEKY"
     gene            complement(5099..5734)
                     /gene="coaE"
                     /locus_tag="PXE26_000282"
     CDS             complement(5099..5734)
                     /gene="coaE"
                     /locus_tag="PXE26_000282"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HDL5592908.1"
                     /translation="MTYVVGLTGGIGSGKTTVSDLFSALGVEVIDADVVARQVVEPGT
                     PLLAKIVEHFGEEILTAEKALERTKLRQIVFNNEEEKTWLNNLLHPAIREEMVKKLQE
                     STACYVIWVVPLLIENKLTEYCDRILVVDVSPEIQLERATKRDNSKIETIKNIMAAQV
                     SREERLSYADDVIENNLPFEQGLLLIKEQVQALHYKYLALAKKEKECQKLL"
     gene            complement(5770..6426)
                     /locus_tag="PXE26_000283"
     CDS             complement(5770..6426)
                     /locus_tag="PXE26_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDL5592909.1"
                     /translation="MLILFSLFIAVWLKAEIPRFAIRVNRQIYQETTSLVNIGLTEQQ
                     FLAQSVLQPKQPRSANLFFLLFPLIMLCSESPIIGTIFILLCFLSLLDMCYYLTDIRY
                     LVLIFLLVLWESLADFQHQTFTFTLAFCLLIGLVSQLMFKKEAFGSGDMLLLVALSPL
                     FRLEKMLLLILTASLLGIGYYLAYWLMKKQKLAKLAFIPFISTAMLLVLMLESRGINY
                     "
     gene            complement(6429..7625)
                     /locus_tag="PXE26_000284"
     CDS             complement(6429..7625)
                     /locus_tag="PXE26_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HDL5592910.1"
                     /translation="MTKIYEFHWQAQSRFGQKQRGKRLATNRDMLENLLLAQGYQHIR
                     ISRNFVLSANPKKEEVNSLLSQLALLVNSAMPLKQALSMLLQNCRNIRLYLWLNELIQ
                     HIESGYAFSQSLEKLGEFVTNQEIQLIKMGEQSGKLGIMLTNLAESRAKLEKLAKKVK
                     KILFYPVIVLLISLALSIGLLVLIVPQFAQLYGSKDKTLPLITDILFTLSECLIEQGT
                     VLLGTLLLAVIFYLFFAKKSRLVAKWKMALWAKMPLFSRIIEQSRIIFFSQNIALMLN
                     AHIPLDVALRSFLSEKNDDPILQQEIGTMLNLLQQGYKFSQGINPNVFGAEMAQMLEV
                     GEKSGNVAKMCEHISEMYQQKLDYQIDILSQLLEPMLMLIMGVIVGTIIVGLYLPIFD
                     MGALVE"
     gene            complement(7622..8074)
                     /locus_tag="PXE26_000285"
     CDS             complement(7622..8074)
                     /locus_tag="PXE26_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilB"
                     /protein_id="HDL5592911.1"
                     /translation="MEYSVTDLNSQRFIEISAEQWQKNCNEKQILLRYLAIPLQETEE
                     QLWLGIDDMQNLNACEIFAFIYHKQIEPVLISSDELKFLLNALSPEQSSRQSEIYEEN
                     TAYSLAHSEQVDRNDPIIQILENLFKFCLQHNASDIHFEPQKEKLLRQ"
     gene            complement(8095..8574)
                     /gene="ppdD"
                     /locus_tag="PXE26_000286"
     CDS             complement(8095..8574)
                     /gene="ppdD"
                     /locus_tag="PXE26_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent pilin"
                     /protein_id="HDL5592912.1"
                     /translation="MQKIVHFRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNS
                     YTQKAALSELLQASASYKSDVEVCIYNSGGLDNCSGGTNGIQANKTSSNTTKYLNSIA
                     VTKGVITVTGKGSLNGYGYTLTPSFSNNTISWTASCSGNDTSLFPANFCSTTVTPNG"
     gene            8755..10134
                     /gene="radA"
                     /locus_tag="PXE26_000287"
     CDS             8755..10134
                     /gene="radA"
                     /locus_tag="PXE26_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HDL5592913.1"
                     /translation="MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKE
                     AAKSDRFSGYAGETSGKVQTLSDISLQEVPRFSSGFNELDRVLGGGVVPGSAILIGGH
                     PGAGKSTLLLQVMCGLAQHLPTLYVTGEESLQQVAMRANHLGLPTANLKMLSETSVEH
                     ICNIADQEKPKIMVIDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVG
                     HVTKDGTLAGPKVLEHAIDASLLLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGL
                     KEVKNPSAIFLSRSEEQTPGSSVMVLWEGTRPLLVEIQALVDHSMLANPRRVAVGLDH
                     NRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQD
                     LVIFGEVGLAGEIRPVTSGQERISEAAKHGFKRAIIPHGNVPKKAIKDMQVFTVKKLS
                     DALDILYNL"
     gene            complement(10189..10419)
                     /locus_tag="PXE26_000288"
     CDS             complement(10189..10419)
                     /locus_tag="PXE26_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgjV family protein"
                     /protein_id="HDL5592914.1"
                     /translation="MDYVEILGYVAMILVACSFLLKDVIKLRVVNSLGCACFVVYGLL
                     IGSIPVTGLNALVVCINLYYISKGNRPTAAHS"
     gene            complement(10539..11033)
                     /gene="folA"
                     /locus_tag="PXE26_000289"
     CDS             complement(10539..11033)
                     /gene="folA"
                     /locus_tag="PXE26_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 dihydrofolate reductase"
                     /protein_id="HDL5592915.1"
                     /translation="MKISIIVARTINKVIGKDNQMPWHLPVDLAWFRQNTLGKPVIMG
                     RKTYESIGRLLPKRPNIILSRSGFTVEGAYAVQSLEQAVELAKNFANTAEIMIIGGGE
                     LFKQALPLAERLYLTEIQADIEGDTFFEFDEQNWALVEEKWSEIDENNPFRCRFMCLE
                     RKSV"
     gene            11109..11264
                     /locus_tag="PXE26_000290"
     CDS             11109..11264
                     /locus_tag="PXE26_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl kinase"
                     /protein_id="HDL5592916.1"
                     /translation="MATLFLVTSEQIMSKTIVIKFGTSTLTHGTKSLSRPYMLELVKL
                     NYTNSIV"
     gene            11261..12229
                     /gene="proB"
                     /locus_tag="PXE26_000291"
     CDS             11261..12229
                     /gene="proB"
                     /locus_tag="PXE26_000291"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDL5592917.1"
                     /translation="MIVVTSGAAAAGRDYLGHPELPKTLASKQMLAAVGQSQLIRVWE
                     NLFDIYNIHIGQMLLTRADLDDRERFLNARDTLDALLAQKIIPVINENDAVATEEFKV
                     GDNDNLSALVAILAQADQLYLLTDQEGLFSADPRSNPDAKLLSVVEKITPEIRQIAGG
                     SSTGLGTGGMSTKITAADIATRSGVETIIASGSRPNVLVDLANGQNIGSKFLVQSDRL
                     EGRKRWLFAAPQVGEIVVDFGAEQALLQHKSLLPVGVSAIKGEFTRGEVIKIFSQDGK
                     ALALGIARYSSEALLRIKGKKSKEIESLLGYEFGSVAVHSDEMVVY"
     gene            12229..12993
                     /locus_tag="PXE26_000292"
     CDS             12229..12993
                     /locus_tag="PXE26_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HDL5592918.1"
                     /translation="MELGIDVLAILFAVATLAGFIDAIAGGGGLLTIPALMAAGLPPA
                     MALGTNKLQACGGSLSSSLYFIRKKAVNLKQIWLLILCTFLGSAAGTIFVQMINVDFL
                     KTLLPFLILIIGIYFLVSPKIGDEDRKQRISFTLFAFTAAVALGFYDGMFGPATGSFM
                     TLAFILLLGFNLSKAVAHAKVINFTSNFASLIFFTLGGAVMWKIGLIMMVGQFIGGTL
                     GAKMVMTKGKKLIRPMLVTMSFMMVGKMLYEQGIFN"
     gene            12996..13628
                     /gene="nth"
                     /locus_tag="PXE26_000293"
     CDS             12996..13628
                     /gene="nth"
                     /locus_tag="PXE26_000293"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HDL5592919.1"
                     /translation="MNKAKRIEILTRLRNENPKPTTELNYSNPFELLIAVILSAQATD
                     KGVNKATDKLFPVANTPQAILDLGVDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG
                     EVPEDRDALEALAGVGRKTANVVMNTAFGHPTIAVDTHIFRVSNRTNFAPGKNVVQVE
                     EKLLKVVPDEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEFKEKTE"
     gene            13825..15075
                     /locus_tag="PXE26_000294"
     CDS             13825..15075
                     /locus_tag="PXE26_000294"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HDL5592920.1"
                     /translation="MDIYLVGGAVRDQLLGLPVKDRDFLVVGATAEQLLAQGFQQVGA
                     DFPVFLHPETKEEYALARQERKNGNGYNGFICDFSPNVTLEQDLIRRDLTINAIAQDE
                     NSTLFDPYGGVQDLENRLLRHVSPAFSEDPLRVLRVARFAARFHSFGFTIAPETLKLM
                     REMVQSGELKHLTAERVWLETQKAFETDNPHVYFDILRLIGALKVLFPELDRLFGVPQ
                     PPQHHPEIDSGKHTLMVLQQAKRLAKKAENPTALLFAALCHDLGKGLTPADILPHHYG
                     HEVKGIQPTRELANRLKIPTEIKDFALLVTEYHTHCHKMAELRPETVIKLFNSLDVWR
                     KPNRFFDFLFACEADARGRLGFEQRNYPQPELAKKYYQAAIEIDVQQVIQDGFEKQAI
                     REELNKRRVYAVRSIKLDSDLINH"
     gene            complement(15176..16111)
                     /locus_tag="PXE26_000295"
     CDS             complement(15176..16111)
                     /locus_tag="PXE26_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDT family transporter"
                     /protein_id="HDL5592921.1"
                     /translation="MSESKPFPITTGFFAMPLGLGALGLAWLNATPITPYATTIGNII
                     AGTSVILWVALLGCYVYRVFFCFEQIKAEFMHPVQCCLFSLVTMTTMISGDVLYVWDF
                     YLGELLIFLGVIVHLIFLVFIIGGLWKGTQFLPETLHPVHYLPPIAGSFTMASSLSLI
                     GYSEIASLFLGIGIISWLVYEPTMLQRIRLSPLFPIARPSLGIVLAPAFVGASAYFSM
                     GGELDLLAKMLWGYGFLQFCFILRNLKWIAENGFSMGFWAFSFGLAAMARGAIEFYQF
                     EPLSFIGLAGFTIANFGIGLLLIFTLKLWLQQSRA"
     gene            complement(16240..16434)
                     /gene="iscX"
                     /locus_tag="PXE26_000296"
     CDS             complement(16240..16434)
                     /gene="iscX"
                     /locus_tag="PXE26_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005656371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HDL5592922.1"
                     /translation="MKWTDTRMIAENLYDMNPDLDPTTVRFTDMHKWICEMEDFDDDP
                     EASNEHILEAILTIWLEEYE"
     gene            complement(16434..16775)
                     /gene="fdx"
                     /locus_tag="PXE26_000297"
     CDS             complement(16434..16775)
                     /gene="fdx"
                     /locus_tag="PXE26_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HDL5592923.1"
                     /translation="MPKIVFLPHEEFCPEGMVVEAKAGDNLLEVAHEAGVEIHHACDC
                     SCACTTCHVVIREGFDSLNDTSDQEEDMLDKAWGLEIDSRLSCQCIVGEEDLVVEIPK
                     YNLNHANEAAH"
     gene            complement(16794..17159)
                     /locus_tag="PXE26_000298"
     CDS             complement(16794..17159)
                     /locus_tag="PXE26_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 51 family protein"
                     /protein_id="HDL5592924.1"
                     /translation="MSNYVKTEISEQFRTVAVEFDLEDNRIFELGERINTEYDVAYMN
                     GYNWAAFLRAYLSIYRPSLLELLEEDPDVGCYYVTYPLSEKSKEKARELKKIIVYLVE
                     NEEEILNFIGEHLDNIEWD"
     gene            complement(17169..19022)
                     /gene="hscA"
                     /locus_tag="PXE26_000299"
     CDS             complement(17169..19022)
                     /gene="hscA"
                     /locus_tag="PXE26_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HDL5592925.1"
                     /translation="MALLQISEPGQTAAPHQHKLAVGIDLGTTNSLVATVRSGQTQVL
                     LDEQERALVPSVVHYAETEKTVGIEAFAKAALDPKNTVISAKRLIGRSLADVQQRYQN
                     LPYQFVASENGLPLIQTAQGNKSPIEVSADILSHLAQFAEKRLAGELSGVVITVPAYF
                     DDAQRQSTKDAARLAGLNVLRLLNEPTAAAIAYGLESGQEGVIAVYDLGGGTFDLSIL
                     RLRKGVFEVLATAGDTALGGDDFDHLLAEWIAEQANYKPQTASEQRELLTLATQTKVA
                     LSQAVEFEVKFANWTGVVSRSQFNELIQPLVKRSLMTCRRALKDAGVEAEEVREVVMV
                     GGSTRVPFVREQVGEFFGKTPLTSIDPDKVVAIGAAVQADILVGNKPDSDMLLLDVVP
                     LSLGIETMGGLVEKIIPRNTTIPVARAQEFTTGKDGQTAMTIHVLQGERELVEDCRSL
                     GKITLRGIPAMAAGVAQVRVTYQVDADGLLNVTAMEKSTKVQASIQIKPSYGLTDEEV
                     TQMIKSSMANAKEDMEARQLVEQRVEADRVIDSVVTALKEDGSAVLSVEEFQAIEAQL
                     ARLIELKEGTDRFAIQQGIKEVDLATQEFAARRMNLSIQKALAGKKMDDLA"
     gene            complement(19338..19679)
                     /locus_tag="PXE26_000300"
     CDS             complement(19338..19679)
                     /locus_tag="PXE26_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease domain-containing protein"
                     /protein_id="HDL5592926.1"
                     /translation="MKAILCQRAKQLRTNMTEAEKVLWQALRAKRFLAIKFKRQQVIG
                     NYIVDFVCFSAKLVIELDGSQHLDQQNYDNLRTHFLNGQGFRVLRFWNNQIHSDLEAV
                     LDTIFYEITRG"
     gene            complement(19827..20459)
                     /locus_tag="PXE26_000301"
     CDS             complement(19827..20459)
                     /locus_tag="PXE26_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2625 family protein"
                     /protein_id="HDL5592927.1"
                     /translation="MKNLEQLLDKQSAWLILRDWFTQAKNHYEILASYPEDAGSALVG
                     MQLSTRSPLGAMVYETGGVFIDHGWLRILGSGNEKLPRGLFDWNFGKTFKQSGEQPSH
                     LLVADDAIGGYFAINAGGIGSDLGKVYYYHPKAKKWENTQLGYSEFLGWALAGDLNHF
                     YQDLRWENWQTDVEKLQGHQVLDLTSKIAVPIERHYQGEFAPENMGYSVA"
     gene            complement(20513..21034)
                     /gene="hscB"
                     /locus_tag="PXE26_000302"
     CDS             complement(20513..21034)
                     /gene="hscB"
                     /locus_tag="PXE26_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly co-chaperone HscB"
                     /protein_id="HDL5592928.1"
                     /translation="MNNPFTLFDLPVQFQLDNAQLSERYLALQKQLHPDNFAHKSSAE
                     QLEAVQKSADVNEALNILKDPILRAEAMIEIHTGEAKNLEEKSMRDVDFLMQQLEWHE
                     KLETIEHRKDETELTVFLKQIKAEQKAVLEQLEQTLNTADWQKANALTDKLRYFKKLI
                     IQIEKVEEKFFDY"
     gene            complement(21044..21367)
                     /gene="iscA"
                     /locus_tag="PXE26_000303"
     CDS             complement(21044..21367)
                     /gene="iscA"
                     /locus_tag="PXE26_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HDL5592929.1"
                     /translation="MSITLTEAAANRVRTFLENRGKGIGLRLGVKTSGCSGLAYVLEF
                     VDVLNEDDQVFEQHGVKVIVDEKSLTYLNGTQLDFVKEGLNEGFKYTNPNVKNECGCG
                     ESFSV"
     gene            complement(21476..21859)
                     /gene="iscU"
                     /locus_tag="PXE26_000304"
     CDS             complement(21476..21859)
                     /gene="iscU"
                     /locus_tag="PXE26_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HDL5592930.1"
                     /translation="MAYSEKVIDHYENPRNVGTFDKEASDTGTGMVGAPACGDILRLQ
                     IKVNDQGIIEDARFKAYGCGSAIASSSLITEWVKGKSLEEAGAIKNSDIAEELELPPV
                     KVHCSILAEDAIKAAIADYKEKQAK"
     gene            complement(21986..23206)
                     /locus_tag="PXE26_000305"
     CDS             complement(21986..23206)
                     /locus_tag="PXE26_000305"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017459011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IscS subfamily cysteine desulfurase"
                     /protein_id="HDL5592931.1"
                     /translation="MKLPIYLDYAATTPMDERVAKKMMEYMTKDGIFGNPASRSHKFG
                     WEAEEAVDVARNQIADLIGADSREIVFTSGATESDNLAIKGAAHFYQTKGKHIITVKT
                     EHKAVLDTCRQLEREGFEVTYLDPEEDGILDLAKLKAAIRPDTILVSVMHVNNEMGVI
                     QPIKEIGAICRAKKIIFHVDATQSVGKIEVNVQDLNVDLMSFSSHKLYGPKGIGGLYV
                     CRKPRVRLEAIIHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMARLTVLRDR
                     LYNGFKDIEEVYVNGSMEEGKRIGSNLNISFNFVEGESLMMSLRDIAVSSGSACTSAS
                     LEPSYVLRAIGRDDELAHSSIRFTLGRWTTEEEIDHTIEIVKKAIVKLRELSPLWEMF
                     KEGVDLSKIEWNHH"
     gene            complement(23261..23713)
                     /gene="iscR"
                     /locus_tag="PXE26_000306"
     CDS             complement(23261..23713)
                     /gene="iscR"
                     /locus_tag="PXE26_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HDL5592932.1"
                     /translation="MKLTSKGRYAVTAILDIALHGKLEPVSLADISDRQAISLSYLEQ
                     LFAQLRRDGIVQSVRGPGGGYQLGKKPEEISVGMIISAVNENIDVTKCKGSGNCRKDS
                     QCLTHSLWERLEDQIEQFLGTISVADLAAEHADHDCEKEHCHDHPHHH"
     gene            24061..25542
                     /locus_tag="PXE26_000307"
     CDS             24061..25542
                     /locus_tag="PXE26_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein transport protein"
                     /protein_id="HDL5592933.1"
                     /translation="MKMKNFSKTLIASLVAFSSAGASAAAFQLAEISTSGLGRAYAGN
                     AAVADNASVVATNPALMTLFKQTEISAGGIFVDADVNIDGKLNATGADASHKNVIPTA
                     IVPNAYIVSPINERLSIGGGVNVNYGLISEFDPNYSAGFLGGRTSLSAVNVNFSAAYD
                     LGYGFVLGAGLNAVHAKAELGRFLGAGAARFAPAKQFLEDKKVQVQSAIQGLKALEAG
                     IAAGNTALEAQKTQVLAQVNGLLKSQNLNQTITNSAQLERLVNGIQNTNASSTIHKLK
                     GDKWALGWNVGLVYNINERNRLGFTYHSEIDLKFKGKYSNTVPVVIPKMVDTITGGAE
                     IDGTLRLRLPAFWEVSGYHKLTDKLAAQYSYKRTDWSKFQSLEAYDMQGNRLLHKTEN
                     FNDSQRIALGLSYDVNEMLTLRTGVAFDESASVTHPSISIPDTDRAWYSVGATVRFTP
                     NLSADVGYSHLRGSNLTFSEDGLATFKSKARANLYGLNVNYKF"
     gene            25609..26163
                     /locus_tag="PXE26_000308"
     CDS             25609..26163
                     /locus_tag="PXE26_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HDL5592934.1"
                     /translation="MKSQIYYDYYPSPIGQLLLLATEEGLIYIELGQEQQTTSLDNFL
                     SAQAASGQILEIFCKTKEILDRYFAGEPLDFQQLDFLAPQGTPFQQSVWKILREIPYG
                     QTTTYGEIATQLGKPSAMRAVGGAVGRNPISILVPCHRVLGKNQALTGFGGGLPNKRF
                     LLQLEDITYKDKGIEFVKPKTKKW"
     gene            complement(26259..28109)
                     /locus_tag="PXE26_000309"
     CDS             complement(26259..28109)
                     /locus_tag="PXE26_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL5592935.1"
                     /translation="MQVKKFSQKYINWVLKLGRLKASLLGFFMVALSAILIQSSLTYL
                     FIGRVVVVDILRSIAFGLISAPFVLYFFTLLVEKLEISRLKLEKAVRDLEELREQDAY
                     LNAKLEKNSRDKSILMATISHELRTPLNGIIGLSQILLDDKTTEKQQEYLKTINMSAT
                     ALAHIFGDIIDLEKIDSSRIELVRKEVEFEQLIHDIANFGHFMAGNKQINFEVKYPPD
                     LPKYIYIDHARLSQILWNLISNAVKFTPASGRILLEIYQLDKEQFSFAVTDSGIGIPE
                     KDQRKIFDMFYQAENSKEKKAQGSGIGLSVSKRIAKLMGGDLVVASQENQGSTFTLTV
                     QAESTETKPIFAIQQHSLKVLLVEDIEMNVVVARAMLEKIGCVVDVAMSGEETFQHFA
                     QNSYDLILLDIQLPDTTGFEIAQQLRLQYENEEIDYLPLLVALTANVIQSRQEYQAQG
                     MDDVLHKPLSLDELMRCLNQHFGDDFLQKNEEKQPLVERGSENLPYSITILNELIGVM
                     GKENVLANMDLFADLMPTYLANLQRYLSDWQTTNSVESRKLTADEAHKIKGALASVGL
                     HQLQQTAQLAQSDNGEQWEQNIAHWVEMICSKWQMDLQLAKEYVRSKGDI"
     gene            complement(28164..29168)
                     /locus_tag="PXE26_000310"
     CDS             complement(28164..29168)
                     /locus_tag="PXE26_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDL5592936.1"
                     /translation="MPGDANKIISNGTSAGGALSTLLGASADHYDYEPYLKEAGALNA
                     SDKIFAVSAYCPITNLENADMAYEWQFNGVNEYSRIDMSRLNAAEFNDRSKPKPKPKI
                     EGSLNEAEIKVSNELAERFPTYLNSLHLVDEKGNPLTLDPKGNGSFKDYLSEVVKTAA
                     NKAYRGLVQDSEEQKAFQQISWLSFEKGKVSSVDWFGYVFSDKRMKSPPAFDALNGSS
                     GENNLFGTDTENNRHFTLYSAERSANKDLNLADPQIVKRMNPMHYLDNPNAAEHWRIR
                     VGTADRDTSLAISAILAIKLQMAGKNVNYETPWNVPHSGDYDVNELFLWADELVKGKK
                     "
BASE COUNT         8730 a         6406 c         5649 g         8773 t
ORIGIN      
        1 tattttatct aattgataga ataccattat ttcccgttga taaaccgctc gctttctgaa
       61 acgtaaatcc ttgcgaaatg cgacacctgc ttttggataa aactgtaaac cattgatgat
      121 attcgtttga gtatgctccg aaaataatcc atagaaaata aactctaata gattattttt
      181 aaaatcaaca ctaaccatct aactgctccc aagcagttaa atctcctcgt gataaacgtt
      241 cagcaatatc agcataaaat tgtttcggta cttccctttt tacttggtat tgagctgatt
      301 gttcttctaa taaatgttct tctatcatct tgatttcttc tgttgtccac tcttcatctt
      361 ctttatgtac aacaaaatcg gtatctacaa tcacaataga catacctagc tccttcaagt
      421 actggttata tattctgtat tttgcctgtt ctaaattcag ctgtctagct tttctgttac
      481 tcacaatttg caaatttttc atcaaattcc accgcttgcc attcaaaaaa aggcgttttt
      541 gcggtatcct atcggcaatt ttttcagtta aatttaaagg ttaaatttta tgcaacagca
      601 gtataaccca agtgagattg aacctaaggt tcagcgttat tgggcagaaa ataaagtttt
      661 taaagcagtt aaagacgtta ccaaagagaa atactattgc ctttcaatgt tgccttatcc
      721 gtcaggtaag ctacatatgg ggcacgttcg taactacacc attggtgatg tagtgtctcg
      781 ttatcagcgt atgatcggta aaaatgtatt acagccgatg ggttgggacg ctttcggttt
      841 accggcggaa ggtgctgcgg tgaaaaataa taccgcaccg gcaaaatgga cttacgaaaa
      901 catcgaatat atgaaaggtc agcttaaaat gttgggcttc tcttatgact gggatcgtga
      961 agtcaccact tgccgtccgg aatactacaa atgggagcaa tggttcttca cagaacttta
     1021 taaaaaaggc ttagtgtata aaaaaacctc aaccgtaaac tggtgtccga atgatgaaac
     1081 tgtgcttgcc aacgagcaag ttcacgaagg ttgttgctgg cgttgtgaca ccccagtgga
     1141 acagcgtgaa attccacaat ggtttatcaa aatcactgac tatgctgaag aattactcaa
     1201 tcagttagat aatctcccac agtggccgga tcaagtaaaa accatgcaac gcaactggat
     1261 cggtcgttcc gaaggggtag aaatcacctt taaaattgcc ggttcaaacg tagaattacc
     1321 ggtttacact acccgtccgg ataccttctt cggcgtaagc tatgtggcga ttgctgcggc
     1381 tcacccatta gcagaattag ctgcacaaaa taacccggca ttggctgaat ttatccgtga
     1441 agcgaaaaac accaaagtgg cagaagcaga attagccacc atggagaaaa aaggaatggc
     1501 aaccggcttg ttcgccattc acccgttaac aggaaaagaa gtaccggttt gggttgctaa
     1561 ctttgtgtta atgcactacg gtacaggtgc ggtaatggcg gttccggctc acgatgagcg
     1621 tgactttgaa tttgcacaaa aatacgattt gcaaattaat caggtaattc aaccgcttga
     1681 tggctcagag tgggatttca gcaaagccgc ttacaccgaa cacggtaaat taatcaactc
     1741 tgccgagttt gacggcttgg aatttgatgt ggctttcact gcgattgccg ataaattaga
     1801 ggcaatgggt gtaggtaaac gccaagtgaa tttccgtctg cgtgactggg gtgtttctcg
     1861 tcaacgttat tggggtgcac caatcccaat gatgaccaca gaagagggcg aagtggttac
     1921 cgttccatta caagatttac cggtgattct ccctgaagat gtggtaatga acggcgtgca
     1981 aagcccaatc aaagccgacc cagagtgggc gaaaaccact tacaacggca aaccggcatt
     2041 gcgtgaaacc gataccttcg atacctttat ggagtcctct tggtattatg cacgttatac
     2101 ttgcccacaa tatcacgaag gaatgttaga ttcagacgag gcaaactact ggctaccggt
     2161 cgatcaatat atcggcggta ttgaacacgc cacaatgcac ttgctctact tccgtttctt
     2221 ccataaattg ttgcgtgatg cgggtatttt aaattcggac gaaccggcga ctaaactgtt
     2281 atgccaaggt atggtgcttg ccgatgcgtt ctactacacc agcccaacta acgagcgtat
     2341 ttgggtcagc ccgacacaag tcaccttaga acgtgatgag aaaggtcgta tcatcaaagc
     2401 aaccgatcca caagggcgtg agctggttca cagcggtatg actaaaatgt cgaaatcaaa
     2461 gaacaacggt atcgatccgc aagaaatggt ggaaaaatat ggtgctgaca cagttcgctt
     2521 gtttatgatg tttgcctccc ctgcggaaat gacattagaa tggcaagaat ccggcgttga
     2581 aggggcaaaa cgtttcttag gtcgtgtttg gaatttagtt tatagctatg cccaaaatcc
     2641 ggcaacgact gcattagatg tgaatgcctt agacaaggat caaaaagaac ttcgccgtga
     2701 tgtacacaaa acgattgcta aggtgagtga tgatattggt cgtcgtcaaa ccttcaatac
     2761 agcgattgct gcggtgatgg aattgatgaa caagctcacc aaagccccac ttgaaaccga
     2821 acaagataaa gccgtaatgg cagaagcttt aagtgcggtg gtgcgtatgc tttacccaat
     2881 cacgccacat atctgctttg agttatggca agtgttaggt aatgaacaaa ccatcgattt
     2941 tgccccttgg gtacaagccg atgaatccgc aatggtggaa gatgaaaaat tagtggtagt
     3001 acaagtcaac ggaaaagtgc gtggcaaaat cactgtttca gctactgcta cggaagatga
     3061 agttaaagct atcgctaaag ccgatccaaa cgttgctaaa ttcttagatg gtcagcagat
     3121 tgtaaaagaa atctacgttc catttaaaat gttgagcttt gcggttaagg cgtaacaaac
     3181 acactctccc ttatatggga gagagaccga taaatatttc gtgcagaaat atttatcaga
     3241 gagagggtac aagcggttat tttcttggaa aattttgcaa aaaatagccc cctctccctg
     3301 ctttttcttc taaacgaaga aaaacctgtc cctctcccac aaggggagag gggaataaac
     3361 aaggaaatct cattatgatt aaaaaactct ctctcatcgc tgtttttgct cttaccgcct
     3421 gcggttggca ctttaaaaac aatgaggtat tacctgaatc gttcagaaca ttaacctttg
     3481 aaagtgcaga tcaacacagc gaaatgtctc gaattttacg caatcagtta caactaagcg
     3541 atgtaaaatt agtgcctagc acggctaatg tggcaaaatt acgtttggtt tcaacctcaa
     3601 cagacagcaa agtggtttct gtgtttaaac aagctcgtga agcagaaaaa atcttaacgc
     3661 taaacgttga tgcgattgcc gatattccaa ataaagggca atacccttta gaagtttcgg
     3721 ttcatcgtac tttctttgat gactctcgtg cagctttggc aaagtctgct gaaaaagaga
     3781 tgattatgaa agatatgtat gaacaagcct ctcgccaatt aattatcaaa atggcgggct
     3841 taaaaaaaga actctcaaaa taatcattgt aggggcgaaa tatgtttcgc ccattgttta
     3901 tctgtatgca aaaaatcttt ccggaaacac ttcaattttc attaaacaaa ggactacagc
     3961 ccttttatct attaacaggg aatgatctgc tattggtgaa tgaaaccaaa gatgccatta
     4021 ttcacaccgc ccgtctcaac ggttttgatg aaaaaaaaga agttgaaatc aaaaacgata
     4081 ctaactggga agaacttttc gaagcagctc aatcaatggg attgtttttt gcacgccaaa
     4141 ttatggtgct gaattttccg gattccccca cagcgacaca gtttaaaaaa ctggctgagc
     4201 tttgtgcctt tattcatagt gatttgctct ttatcctgca cttacctaaa ttttccaaaa
     4261 caatggaaaa acaggcttgg ttcacgcaaa ttgagctaaa tctcgtgcaa attaactgcc
     4321 aaacaccgga acttagcaaa cttccacaat gggtcagtca tcgagcaaaa gcgatgaatt
     4381 tgcaaattga aaatgaagca aaccaactcc tttgttatag ctacgaaggc aatctactgg
     4441 cgcttaaaca ggcattacaa ctgctacaac tcaatgcaac tgatggaaaa atcacgctga
     4501 caaaagccca agaagtggtt gaacactccg cccaatttac tccatttcaa tggattgatg
     4561 cattatttga aggaaaaatc caaagagctc aacgcatttt gtaccatctg caaaatgaag
     4621 aagtacaagc ggtcgtttta ttaagaattg tgcaaaaaga gttgatgatt ttactcgaaa
     4681 tcactcgcaa cccaaccgca gtcgtttcca gcgaacaatc actttttatc ggtaatttac
     4741 gaacagaatt tgaccgcttg aaaatttggc aaaaccgcag acctttttac aaccagatca
     4801 ctcaacgact gacttaccaa aaactttacg ccctaatcca acaactggct gaattagagc
     4861 gtaaggtgaa acaagaattt agcgatgata tttggcaaga attagagcgt ttttccgctc
     4921 aatttaccta actaatactt ttctaaatct tcgctaaaca actccgcttc ttcactggcg
     4981 atagagtgct tttctgccgc ccaatcgcct aaatcaataa tttgacaacg ctcgctacaa
     5041 aacgggcggt atttactttc tttactccac accacttctt tttcacaagt cgggcagttt
     5101 acaatagttt ctggcattct ttttcctttt ttgctaatgc taagtattta taatgtaagg
     5161 cttgaacctg ctctttaatt aaaagcaagc cctgttcaaa tggcaagtta ttttcaatca
     5221 catcatcagc ataacttaat ctttcttcac ggctgacttg ggctgccata atatttttaa
     5281 tggtttcaat tttactgtta tcacgtttgg ttgctctttc cagttggatt tcaggagaaa
     5341 catcaacaac caatatacga tcacaatatt cggtgagctt attttcaatt aaaagcggca
     5401 cgacccaaat cacataacaa gcggtcgatt cttgcaattt ttttaccatt tcttctcgaa
     5461 tggcggggtg aagtaaatta ttgagccacg ttttttcctc ttcattgtta aacacaattt
     5521 ggcgaagttt agtgcgttct aatgcttttt cagcggttaa gatctcttca ccaaaatgct
     5581 ctacaatctt ggctaaaagc ggtgtacccg gttcaacaac ttggcgagcc accacatcag
     5641 catcaattac ctctacccca agagctgaaa ataaatcaga cactgtggtt ttgccactgc
     5701 ctattccacc ggttaagcct acaacgtaag tcataaaaat tgattcctca aaataaaaac
     5761 aaaccaattc tagtaattaa tccctctgct ttcaagcatt agcaccagca acatcgctgt
     5821 gctaataaac ggaataaacg ccaattttgc taatttctgc tttttcatta gccaataagc
     5881 caagtaataa ccaatcccta gcaggctggc ggttaatatc aataagagca ttttttcgag
     5941 ccgaaagagt ggggataacg caaccaataa caacatatcg cccgagccaa atgcctcctt
     6001 tttaaacata agctgtgaaa ccaagccaat caacaggcaa aaagcaaggg taaaggtaaa
     6061 agtttggtgt tggaaatcgg ctaaactctc ccataacacc aacaaaaata taagcacgag
     6121 gtagcgaata tccgttaggt aatagcacat atccagcagt gataaaaaac agagcagaat
     6181 aaaaatcgtg ccgataatag ggctttccga gcagagcata atcaatggaa aaaggagaaa
     6241 aaatagattt gccgatcggg gttgtttcgg ttgtagcacc gattgagcca aaaactgttg
     6301 ctcggttaag ccaatattca ctaatgaagt tgtttcttgg taaatttggc gattgactcg
     6361 aatggcaaat cgagggatct ccgctttgag ccaaaccgca atgaagaggg aaaacagtat
     6421 taacatcgct actccaccaa agcccccata tcaaaaatcg gtaaatacag cccaacaata
     6481 atagtgccga caatcacgcc cattatcaac attagcatcg gttctaatag ctgagacaaa
     6541 atatcaattt ggtaatctaa tttttgttgg tacatctcac taatatgctc acacattttc
     6601 gccacattgc cacttttctc cccaacctca agcatttgtg ccatctcagc accaaacaca
     6661 ttcgggttga tcccttgtga aaatttgtag ccttgttgta acaaattaag catagtgcca
     6721 atttcttgct gtaaaatcgg gtcatcattt ttctcggata aaaacgacct caaggcaaca
     6781 tcaagcggaa tatgagcatt cagcattaag gcaatatttt ggctgaaaaa gataatgcga
     6841 gattgctcaa taattcggct aaacagtggc attttagccc atagagccat tttccacttt
     6901 gcgactaacc tgctcttttt tgcaaaaaac aggtaaaaaa tgaccgctag tagtaacgtg
     6961 ccaagtaata ctgtgccttg ctcaatcaag cattcggaaa gggtaaataa aatatcggta
     7021 atgaggggta aagttttgtc ttttgagcca taaagttggg caaactgcgg tacaatcaaa
     7081 accaatagcc cgatagataa agcgagcgaa atcagcaaca caatcaccgg gtaaaacagg
     7141 attttcttca cttttttcgc caatttttcc aatttcgctc ggctttcagc taaattagtc
     7201 agcataatgc ccagttttcc gctttgttcg cccattttga ttagctgaat ttcctgattg
     7261 gtcacaaatt cacccaattt ctccaacgat tgtgaaaaag catagccact ttcaatatgc
     7321 tgaatcagct cattaagcca tagataaagg cggatatttc ggcagttttg caacaacata
     7381 gataatgcct gttttaacgg catggcagaa ttaaccaaca atgcaagctg tgatagcaag
     7441 ctattcacct cttctttttt cgggtttgct gaaagcacaa aatttcggct aatccgaata
     7501 tgctgataac cttgtgccag caaaaggttt tccaacatgt ctcgattcgt tgccaaccgc
     7561 ttgccccgct gtttttgccc aaatcggctc tgggcttgcc aatgaaattc atagattttc
     7621 gtcattgcct aagcaatttc tctttttgtg gttcaaaatg aatatctgag gcgttgtgtt
     7681 gcaaacagaa cttaaataaa ttctctaaaa tttggataat cggatcgttt ctatccactt
     7741 gttccgaatg agccaatgaa tacgccgtat tctcctcata aatctcactc tgccgactac
     7801 tctgctcagg cgaaagggca ttgagtaaaa acttcaattc atcggaggaa atcaaaacag
     7861 gctcaatctg tttgtggtag ataaacgcaa aaatctcaca ggcattgaga ttttgcatat
     7921 catcaatccc tagccaaagc tgttcttctg tttcttgcag cggaatggct aaatatcgca
     7981 ataaaatctg cttttcattg caatttttct gccactgctc tgctgaaatc tcgatgaacc
     8041 tttggctgtt taaatccgtt accgaatact ccattttgat ttcctcacct caaattagcc
     8101 gtttggtgta acagttgtgc tacagaaatt agctggaaat aggctcgtat cattgccact
     8161 acaacttgcc gtccaactaa tcgtattatt tgagaacgac ggtgttaagg tatagccata
     8221 accattcaga gagcctttgc cggttaccgt aatcacgcct tttgttaccg caattgagtt
     8281 taggtattta gtggtattac tactggtttt attcgcctga atcccattcg tgccaccgga
     8341 gcagttatcc aacccgccac tgttgtaaat acagacttca acgtctgatt tatacgaagc
     8401 agatgcttgt aataactccg ataacgccgc cttttgggtg tatgagttat aggaagggat
     8461 cgcaatagtg gcaagaatgg caataatcgc aatcacgatc atcaactcaa tgagggtaaa
     8521 tgcccgatgc agttggcgaa tgccaagcgg tctaaaatgt acaatttttt gcatataaat
     8581 tccttataaa ttgcaccaac aaattgtggc gaatcaagtg tgcaaatttt ttgcctgctt
     8641 tgcgaccggc aaattttaat ttttcgacgc agatcgaaaa aataaaattt ttatctgttt
     8701 atccatacag ttttttgtta gaatttgcca aatttactca attaggaatc aagaatggca
     8761 aaagcaccta aaaccgctta tgtttgtaac gattgcgggg ctgaatattc ccgttggatg
     8821 gggcaatgta aggaatgtaa ggcttggaat accatcagtg aagtgcggtt gatttccagc
     8881 aaagaagcgg cgaaatctga ccgctttagc ggctatgccg gtgaaacgtc aggcaaagta
     8941 caaacgctgt ctgacatcag cttgcaggaa gtgcctcgct ttagcagtgg ctttaacgag
     9001 ctggatcgtg tactcggtgg cggcgtagtg ccggggtcag caattctgat cggcggtcac
     9061 ccgggggcgg ggaaaagtac gttattactg caagtaatgt gcggtttagc ccaacatctg
     9121 ccaacgctgt atgtcaccgg tgaagagtcg ttacaacaag ttgcaatgcg ggcaaatcac
     9181 ttaggcttac caacggcaaa tctgaaaatg ttgtctgaaa cctctgtcga gcatatttgc
     9241 aatattgcag atcaagaaaa gcccaaaatt atggtgattg actcgattca ggtgatgcac
     9301 ttgtcggata ttcagtcctc acccggcagt gtttcacaag tgcgtgaatg tgcatctttc
     9361 cttacccgct acgccaaaac ccgccaagtg gcgattatta tggttgggca cgtcactaaa
     9421 gatggcacgc ttgccggccc gaaagtgttg gaacacgcca tcgatgcttc cttgctgtta
     9481 gaaggcgaat ccgattcccg tttccgtact ttgcgtagcc agaaaaatcg ttttggtgcc
     9541 gtcaatgaat tgggcgtatt tgcgatgacc gaacaagggc taaaagaggt taaaaaccca
     9601 tctgcgattt ttttaagccg tagcgaagag caaacgccgg gcagttcggt gatggtgtta
     9661 tgggaaggaa cacgcccatt gttggttgaa attcaagcct tagtcgatca ctcaatgctg
     9721 gcaaaccctc gccgtgtggc ggttggctta gatcataacc gtttatcgct attacttgcg
     9781 gtgctacacc gacacggtgg cttgcagatg tcggatcaag atgtgtttgt aaatgtggtc
     9841 ggtggggtga aagtcacgga aaccagtgcc gatttagcct taattttggc gttaatttcc
     9901 agcttccgta accgtccatt gccgcaagat ttggtgattt ttggggaagt cggcttagca
     9961 ggggaaatcc gcccggttac cagtgggcaa gagcggatca gcgaagccgc aaaacacggc
    10021 tttaaacgag cgataattcc tcacggcaat gtcccgaaaa aggcaattaa agatatgcag
    10081 gtgttcaccg tgaaaaaact cagtgatgcg ttagatattc tgtataatct ctaaaatcaa
    10141 gaaccgcttg taagtctgtc ttacaagcgg tctgttttag gtaaaaattt acgaatgtgc
    10201 ggcagttggt ctattgcctt tggaaatata gtataaatta atacacacca ccaacgcatt
    10261 taagccggtg accggaatcg agccaatcag caaaccataa acaacgaaac aggcacaacc
    10321 cagcgaattc accacccgca gtttaatcac atcttttaat aaaaaagaac aggcaactaa
    10381 aatcatcgcc acatagccga gtatttcaac atagtccatt tagaacctcc tcaaataaaa
    10441 taaactgccg atattttaaa ggctgttttt ttatttgtat ctagctctaa aaatagcaaa
    10501 ggtttgcgtt cacattttta cttttaaccg cttagttatt aaacagattt tcgttctaaa
    10561 cacataaaac ggcaacggaa agggttattt tcatcaattt ctgaccactt ttcttctact
    10621 aacgcccaat tttgttcatc aaattcaaag aacgtatccc cttcaatgtc tgcttgaatc
    10681 tcagttaaat aaagtctttc tgctagtggt aaggcttgct taaacagttc ccccccacca
    10741 ataatcatta tttcagctgt atttgcaaaa tttttcgcta attcaaccgc ttgttcgagc
    10801 gattgtaccg cataagcccc ttccaccgta aaacctgaac gggaaagaat aatattaggg
    10861 cgttttggca ataacctgcc gatagattca taggttttcc gccccataat caccggtttg
    10921 ccgagcgtgt tttggcgaaa ccaggctaaa tctaccggca aatgccacgg catttggtta
    10981 tctttgccaa tcaccttgtt gattgttcgg gcaacaataa tgctgatttt cattttttct
    11041 cctgttatgc aaattggttt gattttatat caaattaagc gtgattttac accctaaaag
    11101 tgatactttt ggcaacatta tttttagtta caagtgaaca gattatgtca aaaactatcg
    11161 tgataaaatt tggcaccagc actctcacac acggcactaa aagtttaagc cgtccttata
    11221 tgttagagct ggtaaagctc aattacacca acagcatcgt gtgattgtgg tgacatccgg
    11281 agctgccgct gccggtcggg actatttagg acaccctgaa ctccctaaaa ccttagcctc
    11341 taagcaaatg ttagcagcgg tcgggcaaag tcagctcatt cgagtgtggg aaaatttatt
    11401 cgatatttat aatatccata tcgggcagat gctcttaacc cgagccgatc tggacgatcg
    11461 tgaacgtttc ctcaatgccc gtgataccct tgatgccctg cttgcacaaa aaatcattcc
    11521 ggtgattaat gaaaacgatg ccgttgctac cgaagaattt aaagtaggcg ataacgataa
    11581 tttatcggct ttagttgcga ttttggctca agcagatcag ctctatttat taaccgacca
    11641 agaaggctta ttcagtgccg atcctcgctc aaaccctgat gctaaattgc tctcggtggt
    11701 ggaaaaaatc acgcctgaaa tccgccaaat tgccggtggt agttcaaccg gtttaggcac
    11761 gggcggaatg agtaccaaaa ttactgctgc tgatattgct acccgctccg gtgtggaaac
    11821 catcatcgcc tccggttctc gcccaaatgt gttagttgat ttagcaaacg ggcaaaacat
    11881 cggcagtaaa tttttagtcc aatctgaccg cttggaaggc agaaaacgct ggttatttgc
    11941 tgctccgcaa gtgggtgaaa ttgtggtaga tttcggggcg gaacaagcct tgcttcaaca
    12001 taaatcatta ctgccggtgg gagtttctgc catcaaaggc gaatttactc gaggtgaagt
    12061 aatcaaaatt ttcagccaag acggcaaagc cttagcactc ggcattgccc gttatagcag
    12121 tgaggcattg ctgcgaatta aaggtaagaa atcaaaagaa attgaatcgc tccttggtta
    12181 tgaatttggt tctgttgcag tgcatagtga cgaaatggtg gtgtattaat ggaattggga
    12241 attgatgttt tagcaatctt gtttgccgtt gcgacccttg ccggctttat cgatgccatc
    12301 gctggcggcg gtggcttact cactattcct gcattaatgg cagcagggct tcctccggca
    12361 atggcacttg gcacgaataa attacaggcg tgtggcggat cactctcttc ctcactctat
    12421 tttattcgca aaaaagctgt taatttaaaa caaatttggt tgctaattct atgcactttt
    12481 ttaggctctg ccgccggtac tatttttgtg caaatgatca atgtcgattt cttaaaaaca
    12541 ttgttgcctt tcttaattct gattatcggc atctattttt tggtcagccc taaaattggc
    12601 gatgaagatc gtaaacaacg cattagcttt accctatttg cctttaccgc cgctgtcgct
    12661 ctcggttttt atgatggaat gttcggaccg gcaaccggct cttttatgac tctggcattt
    12721 attttgctgc tcggcttcaa cctctctaaa gccgtagcac acgccaaagt gattaatttt
    12781 acctccaact ttgcctcatt aattttcttt acgcttggtg gtgcggtaat gtggaaaatc
    12841 ggcttaatta tgatggtcgg gcaatttatt ggcggcacac taggtgcgaa aatggtgatg
    12901 acaaaaggca aaaaattaat ccgtccgatg ctagtgacta tgtcttttat gatggtcggc
    12961 aaaatgctct acgagcaagg aatttttaat taacaatgaa taaagcaaaa cgtattgaga
    13021 ttttaacccg tttacgcaat gaaaatccaa aaccgacaac tgaactcaat tacagtaatc
    13081 cgtttgaatt attaattgcc gtgattctat ccgcccaagc gaccgataaa ggcgtaaata
    13141 aagccaccga taagctcttc cctgtcgcca acacgccaca agcgatttta gatttaggcg
    13201 tagatgggct aaaagagtac atcaaaacta tcggcttatt taacagcaag gcagaaaata
    13261 ttatcaagac ctgccgagat ctgatcgaaa aacataacgg cgaagtgcct gaagacagag
    13321 atgccctcga agcccttgcc ggtgttggca gaaaaaccgc caatgtggtg atgaataccg
    13381 cattcggaca ccctacgatt gcagtcgata cccatatttt cagggtgtcg aaccgcacga
    13441 acttcgctcc cggcaaaaat gtagttcagg tagaagaaaa actgctcaaa gttgtgccgg
    13501 acgaatttaa agtcgatgtt caccattggt tgattttaca cggacgctac acttgcattg
    13561 cccgtaagcc tcgttgtggt tcttgtatta ttgaagattt atgtgagttt aaagagaaga
    13621 cggaataaca ttatctggtg gtatttaatg aataactccc ctctttagaa aagtaggggc
    13681 tgggggagat ttgatactat ttcaacattt cgtatgagcg tatagaaatt ctgccaaatc
    13741 ttccctatcc cctctttgct aaagagggga actagatcga gcgtaaaata taacaagcgg
    13801 tcattttttt gagatttttt gcaaatggat atttatttag tcggtggagc agtgcgggat
    13861 caacttcttg ggctgccagt gaaagataga gattttttag tggttggcgc aactgccgaa
    13921 caacttttag cccaaggatt tcaacaagtt ggggcagatt ttccggtgtt tttacaccct
    13981 gaaaccaaag aagaatatgc ccttgctcgc caagaacgca agaacggcaa tggttacaac
    14041 ggctttattt gcgatttctc cccaaacgtc acgcttgagc aagatttgat ccgccgagat
    14101 ttaaccatta acgccatcgc ccaagatgaa aacagcacac tttttgatcc ttatggcggt
    14161 gtgcaagatt tagaaaatcg gctactccgc cacgtttctc ctgcattcag cgaagatccg
    14221 ctacgggtgc tacgggttgc ccgctttgcc gcccgttttc attcatttgg ttttaccatt
    14281 gctcctgaaa ccctgaaatt aatgcgagag atggtacaaa gcggtgaatt gaaacattta
    14341 accgctgaac gtgtgtggtt ggaaacacag aaagcctttg aaaccgataa tccgcacgtt
    14401 tattttgaca ttttacgctt aattggggca ttaaaagtgc tattccctga actggatcgt
    14461 ctgtttggcg taccacaacc acctcaacac caccctgaaa ttgactccgg caaacacact
    14521 ctaatggtgc tacaacaggc aaaaagactt gcaaaaaaag cggaaaatcc gaccgcttta
    14581 ctctttgcag ccctttgcca cgacttaggc aaaggcttaa cgcctgctga tattttgcct
    14641 catcactacg gacacgaagt caaaggcatt caaccaaccc gagagttagc caatcggtta
    14701 aaaatcccaa ctgagattaa agattttgcc cttttagtga ccgaatacca cacgcattgc
    14761 cataaaatgg cggaacttcg ccctgaaacg gtaataaaac tgtttaacag cctagatgtg
    14821 tggcgtaaac caaaccgctt ttttgatttc ctgttcgcct gtgaagcgga tgctagaggg
    14881 cgattaggtt ttgaacagcg gaattacccc caacctgaat tggcgaaaaa atattaccaa
    14941 gccgcaatcg aaattgatgt gcagcaagtt attcaagacg gttttgaaaa acaagcaatt
    15001 cgggaagagc tgaataaacg cagagtgtat gcggtaagaa gcatcaagct agatagcgac
    15061 ctaataaacc attaggttat ccgccacttt ctcaaaatca attcccaaag ttcaagttgg
    15121 ttaaatgtat ggattcttta aaaggtggcg ttattttagt gaatttataa tgttcctatg
    15181 ctcttgattg ttgtagccac aatttcaggg taaagatcag caataaccca atgccgaaat
    15241 tggcaatagt gaagccggct aacccaataa aagataaagg ttcaaattga taaaattcaa
    15301 tcgcacctct tgccattgca gctaaaccaa atgaaaatgc ccagaaaccc atcgagaagc
    15361 cattttcagc tatccatttg aggtttcgta aaataaaaca gaattgtaag aatccatatc
    15421 cccataacat ttttgccaac aagtctaatt ctccacccat agaaaaatag gcagaagcgc
    15481 ccacaaatgc cggagcaaga acaattccta aagatggtct agcaatcgga aaaagcggac
    15541 taagccgaat tctttgtaac atagtgggtt catatactaa ccaggaaatt atgccaatgc
    15601 ctaaaaataa agatgcaatt tcactgtagc caattaagct taatgaactt gccatagtga
    15661 agctccctgc aattggcggt aggtaatgta ccgggtgtag cgtttccggc aaaaattgtg
    15721 tgcctttcca taatccacca ataataaaaa ccaagaaaat taaatgcaca atgacgccta
    15781 aaaaaatcaa tagttcgcct aaataaaaat cccatacata gagcacatca ccgcttatca
    15841 tggttgtcat tgtcactaag gaaaataaac aacattgcac tgggtgcata aattctgctt
    15901 taatctgctc aaaacaaaaa aacacacgat acacataaca gcctaataag gctacccaaa
    15961 gtatgactga cgttccagca atgatattac caattgttgt agcataagga gtgataggcg
    16021 ttgcatttaa ccaggcaagg cctaacgccc ccagccctaa tggcattgca aaaaagcctg
    16081 tagttattgg aaaaggttta gattcactca taaatttatc ctcatattga aataatgcat
    16141 aactgtattc ggctttataa cagtcatatg taaaaaattt tatttttcta accgcttgta
    16201 ataagaaaaa cctaaagcac ttgctttagg ttcctactac tattcatact cttctagcca
    16261 gatagttaaa atcgcttcaa gaatatgttc atttgatgct tccggatcat catcgaaatc
    16321 ttccatttca caaatccatt tatgcatatc tgtaaaacga accgtggtcg ggtctaaatc
    16381 cgggttcata tcatacagat tttcagcgat cattcgggta tctgtccatt tcattagtgc
    16441 gctgcctcat ttgcgtgatt taaattatat tttggaattt caacaaccaa atcttcttca
    16501 ccaacaatac attggcaact taaacggctg tctatttcca atccccaagc tttatccagc
    16561 atatcttctt cttgatctga agtatcattt aacgaatcaa aaccctcacg aattaccacg
    16621 tggcaagtgg tacaagcaca agaacagtcg caagcgtgat gaatttcaac gcctgcttcg
    16681 tgtgctactt ctaataaatt atctccggct ttagcttcaa caaccatacc ttccgggcaa
    16741 aattcttcgt gtggaagaaa aacaattttt ggcattttaa agtttcctta ttactaatcc
    16801 cattcaatat tatccagatg ttcgccgatg aagtttaaaa tctcttcctc attttcaacc
    16861 agataaacaa taatcttctt taattccctt gctttctctt tacttttctc ggaaagcgga
    16921 taggtaacat aataacatcc tacgtccgga tcttcttcta ataactctaa taggcttgga
    16981 cgataaatac taagataagc ccgtaaaaat gcagcccagt tataaccgtt catataggca
    17041 acatcatatt cagtattaat ccgctcgccc aactcaaaaa tgcggttatc ctctaaatcg
    17101 aattcaaccg caacggttct gaattgttct gaaatctcgg tttttacata gttagacata
    17161 ctgcctcctt atgctaaatc gtccattttt ttaccggcta atgctttttg aattgataaa
    17221 ttcatacgcc gtgctgcaaa ttcttgcgta gctaaatcca cctctttgat accttgctga
    17281 attgcaaagc gatcagtacc ttcttttaat tcgattaaac gggctaattg tgcttcaatc
    17341 gcttggaact cctccacact caacactgca gagccatctt ctttcaatgc cgttaccacg
    17401 ctgtcaatca ctcggtcggc ttctactcgc tgttcaacta actggcgggc ttccatatct
    17461 tctttggcat ttgccattga ggatttaatc atctgcgtaa cttcttcatc ggttaagcca
    17521 taagacggtt tgatttgaat tgaagcctgc actttggtcg atttttccat tgcagtcacg
    17581 tttaataaac cgtctgcatc aacttggtaa gttacccgaa cctgtgcaac ccctgctgcc
    17641 attgccggaa tgccacgcaa agtgatttta ccgagagagc gacaatcttc gactaattca
    17701 cgctcacctt gtaaaacgtg gattgtcatc gccgtttgac cgtctttacc ggtagtaaac
    17761 tcttgagctc gagctactgg gatagtagtg ttgcgtggaa taattttctc caccaaacca
    17821 cccatcgttt caataccaag cgaaagtggc acaacatcaa gcaacaacat atcggaatcc
    17881 ggtttgtttc caactaaaat atccgcctgc actgccgcac caatggcaac aactttatcc
    17941 gggtcgatag aggttaatgg cgttttaccg aaaaactcgc cgacttgttc acgcacaaac
    18001 ggtacacggg tcgaaccgcc taccattacc acttcacgaa cctcttctgc ttcaactccg
    18061 gcatctttca aggctcggcg acaagtcatc agcgagcgtt ttacaagcgg ttgaattagc
    18121 tcattaaatt gcgaacggct tactacgcct gtccaatttg caaatttcac ttcaaattca
    18181 accgcttgcg aaagtgcgac tttggtttga gttgccaaag ttaataattc acgctgctcg
    18241 cttgccgttt gaggtttgta atttgcctgt tcagcaatcc attccgctaa taggtggtcg
    18301 aaatcatcgc caccgagtgc ggtatcacct gcggttgcta atacttcaaa cacacctttg
    18361 cgtaaacgca aaatagataa atcgaaagta ccgccaccta aatcgtaaac ggcaatcaca
    18421 ccttcttgtc cgctttctaa accataagca atcgctgctg ccgttggttc attgagcaaa
    18481 cgtaatacat ttaaacccgc aagacgtgcg gcatctttgg tactttggcg ttgtgcgtca
    18541 tcaaaataag ccggtacggt aattaccacg cctgaaagct caccggctaa acgcttttcg
    18601 gcaaattgtg ccaagtggct taaaatatcc gccgaaactt caatcgggct tttattacct
    18661 tgcgctgttt ggattaaagg taaaccgttt tcgctcgcga caaattgata aggtaaattt
    18721 tgataacgtt gctgaacatc tgccagagaa cgcccaatga gacgtttagc tgaaatgacg
    18781 gtatttttcg ggtcaagtgc agctttggca aaggcttcaa tcccaactgt tttttctgtt
    18841 tccgcataat gcactactga cggcactaat gctctttctt gttcatcaag caatacctga
    18901 gtctgcccgc tacgcacagt tgccactaat gaattggttg tacctagatc aattcctacc
    18961 gctaatttat gttgatgtgg tgcagcggtt tgaccgggtt cagaaatttg taataatgcc
    19021 atttatttat ctctttatct ttctaactta gttctctatt gtattaaatg gagtgaaata
    19081 tattgtttaa gagaagctgg agattcccct ctccctgatt tttcttctga acgaagaaaa
    19141 atctatccct ctcccacaag gggagagggt tattctttca aaaattcaaa acaactaaaa
    19201 aattagcatt ctccttttgt aggagaaaat gttgttcttt caaaattcta aaataaccgc
    19261 aaaattaact ctcgcccctt gtgggagaga gacagataaa tcattcgttc agaatgattt
    19321 atcagagaga gggggaatta ccctctcgta atttcataaa aaattgtatc taaaacagcc
    19381 tctagatcgc tatgaatttg attattccaa aatcttaaaa ccctgaaccc ctgaccgttt
    19441 aaaaaatgag ttcgtagatt atcatagttt tgttgatcta aatgttgtga accatctaat
    19501 tcaataacta atttcgctga aaagcaaaca aaatcgacaa tatagttacc tataacttgt
    19561 tgccgtttaa attttatcgc taaaaatcgt tttgctctta atgcttgcca aagaaccttc
    19621 tctgcttctg tcatattagt ccgaagctgt ttagctcttt ggcataaaat tgctttcatt
    19681 ttttattcct cttttttaat ttagtataaa aggaataaaa aatataattt gagcgatttt
    19741 tgtgatctaa atcgaaaatc agaaaatttc tttcgttcta aaaaaataag ctaaacagcc
    19801 tatatttcag cctctcttac aaacacttaa gccaccgaat atcccatatt ttcaggggca
    19861 aattcgcctt ggtagtggcg ttcaatcgga acggcgattt tacttgtaag atccagcact
    19921 tgatgccctt gtaatttctc tacatcggtt tgccagtttt cccaacgcaa atcctgataa
    19981 aaatggttta aatctccggc taatgcccag cctagaaatt ctgaataacc taattgggtg
    20041 ttttcccatt ttttagcttt tggatgataa taataaactt tgccaagatc tgagccgatt
    20101 ccgccggcat taatggcaaa atagccaccg attgcatcat ccgctaccag caagtggctt
    20161 ggttgttcgc cagattgttt aaaagttttg ccaaagttcc aatcaaataa gcctcgaggc
    20221 aatttttcgt tgcctgagcc taaaatgcgt aaccaaccgt ggtcaataaa tacgccaccg
    20281 gtttcataca ccattgcccc tagcggtgag cgagtagaaa gttgcatacc aaccaatgca
    20341 ctgccggcat cttcagggta actcgctaaa atttcgtaat gatttttggc ttgggtaaac
    20401 cagtctctta aaattaacca agccgattgt ttatctaata attgttctaa atttttcatt
    20461 tgcaaaattt ccttagaatt tgaccgcttg cgaaaaccat acaaatgtag gattaatagt
    20521 caaagaattt ttcttctact ttctcaatct gaataattaa ttttttaaag taacggagct
    20581 tgtcggttaa cgcattggct ttttgccagt cggctgtatt taacgtttgt tcaagctgtt
    20641 ctaatactgc tttttgttcc gctttaatct gttttaaaaa gacggtcagt tcggtttcgt
    20701 ctttacgatg ctcaatggtt tccagttttt cgtgccattc gagttgctgc attaagaaat
    20761 ccacatctcg catacttttt tcttcgagat ttttggcttc acctgtatgg atttcaatca
    20821 tcgcttctgc ccgtaaaatc ggatctttaa gaatattgag tgcctcattg acatcagcag
    20881 atttttgcac cgcttctaac tgttcagcac ttgatttgtg ggcaaagtta tctgggtgaa
    20941 gctgtttctg taaagcaaga taacgctcag aaagctgggc gttatcaagt tgaaattgaa
    21001 cgggtaaatc aaataaagta aaagggttat tcattacagt tccttacaca ctaaaacttt
    21061 cgccacagcc gcattcgttt ttaacattcg ggttggtgta tttaaagcct tcgtttaagc
    21121 cttctttcac aaaatccagc tgcgtaccgt ttaagtaagt caggcttttt tcatcgacaa
    21181 taacttttac gccgtgttgt tcgaaaacct gatcgtcttc atttaataca tcaacaaatt
    21241 caagcacata ggcaagcccc gaacaaccgg aagttttcac accaagcctt agcccgatac
    21301 ctttacctct gttttctaag aatgtacgaa ctcggtttgc ggcagcttct gttaaggtaa
    21361 tgctcatagt tttccttatg tgaatggatt aaatcaagat agaaatagca aatgcaagcg
    21421 gttaaatttt gcaaattttt tgcaaaaatc gaccgcttgc attgattgta tcatattact
    21481 tagcttgttt ctctttgtag tctgcaattg cagctttgat tgcatcttct gctaagattg
    21541 aacagtgaac ttttaccggt ggtaattcta actcttcagc gatatcactg tttttaatcg
    21601 cacctgcttc ctctaatgat ttacctttta cccattcggt aatgagagaa cttgatgcga
    21661 ttgcagaacc acaaccgtat gctttaaagc gtgcatcttc aatgatacct tgatcgttca
    21721 ctttaatttg taaacgtaaa atatcaccac aagccggtgc tcccaccata cctgtaccgg
    21781 tgtctgatgc ttctttatca aaagtcccta cgttgcgtgg gttttcgtaa tgatcaatta
    21841 ctttttcgct atatgccatt tttgtattcc ttttatttcc tatttccggc gaaacctatt
    21901 tcgcccctac attcaattta ctatttgtga tgaaagctta ttttgtaggg gcaaatatta
    21961 tttgcccttg caaaattttt ctgaattagt ggtgattcca ttcgatttta gacaaatcta
    22021 caccttcttt gaacatttcc caaagaggcg aaagctcacg caatttcacg atagcttttt
    22081 tcacgatttc aatagtatga tcgatttctt cttcagtcgt ccaacgacct aaagtgaaac
    22141 ggattgagct gtgagctaat tcatcgtcac gaccgattgc acgtaacaca taagatggct
    22201 ctaaacttgc agaagtacaa gctgaacctg atgatactgc gatatcacgt aatgacatca
    22261 ttaacgattc gccctcaaca aagttaaagc tgatgtttag gtttgaaccg atacgtttgc
    22321 cttcttccat tgaaccgttt acatatactt cttcaatatc tttaaagccg ttatataaac
    22381 gatcacgtaa cacggttaaa cgagccattt ccgttgccat ttcttcttta gcgatacgat
    22441 atgcttcacc catacctaca atttggtgaa caggcaatgt acccgaacgc ataccacgct
    22501 cgtgaccgcc accgtgaata attgcttcta aacgcacacg tggtttacga caaacatata
    22561 gaccgccgat accttttggt ccgtataatt tgtggcttga gaaagacatt aaatcaacat
    22621 ttaagtcttg tacattcact tcgattttac caacagactg ggtcgcatca acgtggaaaa
    22681 tgattttctt cgcacggcag attgcaccga tctctttaat cggttggatt acgcccattt
    22741 cgttatttac gtgcattacc gaaactaaaa ttgtgtccgg acgaatagcc gcttttaatt
    22801 tagctaaatc taaaataccg tcttcttcag ggtctaagta agtcacttca aaaccttcac
    22861 gctctaactg acggcaagta tctaatactg ctttatgttc ggttttaaca gtgataatgt
    22921 gtttaccttt ggtttgatag aaatgagccg cacctttgat ggctaagtta tccgactctg
    22981 ttgcaccaga agtgaaaacg atttcacggc tgtctgcacc gattaaatcg gcaatttggt
    23041 tacgagccac atcaaccgct tcttccgctt cccaaccaaa tttgtgtgag cgagaagcag
    23101 ggttaccaaa gataccgtct ttggtcatat attccatcat ttttttcgca acacgttcgt
    23161 ccattggtgt ggttgctgcg taatccaaat aaattggtaa tttcattgtt actcctagtt
    23221 aaaacaaccc aagcggtcat ttttgataaa aaatttgcaa ttagtgatga tgaggatgat
    23281 cgtgacaatg ctctttttca caatcgtgat cagcgtgttc tgcggctaaa tccgcaactg
    23341 aaattgtccc taaaaactgc tcaatttgat cttctaaccg ctcccacaaa gaatgcgtta
    23401 aacactgaga atctttacgg caattaccac tacctttaca tttggtgaca tcaatatttt
    23461 cattcacggc ggagatgatc atacccacgc taatctcttc cggtttttta cctaattgat
    23521 acccaccacc cggtccacga acgctctgca cgataccgtc acggcgaagt tgagcaaaca
    23581 gttgctctaa ataagacagt gaaatcgctt ggcgatctga aatatcggct aagctaaccg
    23641 gctctagttt tccgtgtaaa gcaatatcta aaatggcggt tactgcataa cgcccttttg
    23701 aggtaagctt cataaaatat cctcattgat tatccagaaa atcttctgaa acagttgcta
    23761 aattttgata taccccacca atttagtcaa tcatttagga ctaattagtg taaaaggttt
    23821 tatatattaa aacagattaa aacaataacg ctgattatac gaaaaaagag ccgaaaatac
    23881 caaaatacca aagataaaca gttcatagac cgcacaattt cactcttatt tgctcctaac
    23941 tgatcggaac agttgaaatt taattgatag agagtacttc gacacataaa atctgcactt
    24001 tcttcttata acttttatga attattcatt ctaaaatata tattttttaa gagatttcct
    24061 atgaaaatga aaaactttag caaaacttta atcgcttcat tagtagcatt cagctcagcc
    24121 ggtgcatctg ctgccgcatt ccaattagct gaaatttcaa catccggttt aggtagagct
    24181 tacgcaggta atgccgctgt agccgataac gcttctgttg ttgcaaccaa ccctgcgtta
    24241 atgacgttat ttaaacaaac cgaaatttct gccggtggta ttttcgtaga tgctgatgta
    24301 aatattgatg gaaagctcaa tgctacaggt gcagatgcct cacataaaaa tgtcattcct
    24361 accgctattg ttccaaatgc ttatatcgtt tcacctatca atgagcgcct ttctattggt
    24421 ggtggcgtaa atgtaaatta tggtttgata tctgaatttg accctaacta ttctgctggt
    24481 ttcttaggtg gtcgtacatc attaagtgct gtgaatgtta attttagtgc ggcttatgat
    24541 ttaggttatg gttttgtatt aggggcaggt ttgaatgcag tacacgcaaa agcagaatta
    24601 ggacgtttct taggtgccgg tgcggcacgt tttgctccag ctaaacaatt tttggaagac
    24661 aagaaagtac aagtacaaag tgcaattcaa ggtttaaaag ctcttgaggc aggtatcgca
    24721 gcaggtaata ccgctcttga agctcaaaaa acacaagtat tagctcaagt aaacggttta
    24781 ttaaaatctc aaaatttaaa ccaaaccatc acgaattctg ctcaattaga acgtttggtt
    24841 aatggcattc aaaataccaa tgcaagttca acaattcata aacttaaagg cgataaatgg
    24901 gcattgggtt ggaatgttgg cttggtttat aatatcaatg aaagaaaccg tttaggtttt
    24961 acttaccact ctgaaattga tcttaaattt aaaggcaaat attctaatac cgttcctgta
    25021 gttattccta agatggtaga taccattacc ggcggtgcag agattgatgg tacactaaga
    25081 ttacgcctac cggcattctg ggaagtgtca ggttaccaca aactaaccga taaacttgct
    25141 gcacaataca gctataaacg cacagactgg agcaaattcc aaagcctaga agcttatgat
    25201 atgcaaggta accgcctatt gcacaaaacc gagaacttta atgactctca acgtattgca
    25261 ttaggcttgt cttatgatgt gaatgaaatg ctaacattgc gtacaggtgt agcatttgat
    25321 gaaagtgcaa gtgtaactca tccatcaatc tcaattccgg acactgatcg tgcttggtat
    25381 tctgtaggtg caaccgtgcg tttcacgcca aacctatctg ctgatgtagg ttactcacat
    25441 cttcgtggta gcaacctgac cttctctgaa gacggtttag ccacattcaa gagcaaagct
    25501 cgtgcaaatc tttacggttt aaacgtaaac tacaaattct aatttgatga attaaggttt
    25561 aaagaggtgt aaaatcaatt acacctcttt ttttattggc ataaaaacat gaaatctcaa
    25621 atttactacg attactaccc aagccctatc gggcaattat tgcttttagc cacagaagaa
    25681 ggcttgattt acattgagct agggcaagag caacaaacca cctcgcttga taatttcctt
    25741 tccgctcaag ctgcaagtgg tcagatttta gaaatttttt gcaaaaccaa agaaatttta
    25801 gaccgctatt ttgccggcga gccattggat tttcagcagt tggattttct tgccccgcaa
    25861 ggcactccat tccagcaatc agtttggaaa attttgcgtg aaatccctta cgggcaaact
    25921 actacttatg gcgaaattgc cacccaacta ggcaagccaa gtgcgatgcg agccgtcggc
    25981 ggtgcagttg ggcgaaaccc gatttcgatt ttagtgcctt gccatagggt attagggaaa
    26041 aatcaagcct taaccggatt cggtggtggc ttgccgaata agcgttttct attacagctg
    26101 gaagatatta cctataaaga taaaggcatt gaatttgtaa aaccgaaaac caagaaatgg
    26161 taaatacgtt ttgatagcac aagcgtccac gcttgtgctt cagatattaa aattggtaca
    26221 agcgtggacg cttgcaccat cgtaacattt caaatttact aaatgtcccc cttgcttcta
    26281 acatattcct tagctaattg caaatccatc tgccatttgg aacaaatcat ttccacccag
    26341 tgtgcaatat tttgctccca ctgctcgccg ttatcggatt gagcaagctg agcagtttgt
    26401 tgtagctgat gtaatccgac tgatgctaat gctcccttaa tcttatgagc ctcgtccgcc
    26461 gttaatttac ggctttccac agaatttgtg gtttgccaat cacttaaata acgctgtaaa
    26521 tttgccaaat aagtgggcat taaatcagca aataaatcca tattggcaag cacattctct
    26581 ttccccatta ccccaatcaa ttcattaaga attgtaatgc tataaggtaa attctcagaa
    26641 cctctctcta caagcggctg tttttcttca tttttttgca aaaaatcatc tccaaaatgt
    26701 tggttgagac aacgcattaa ttcatctaaa gagagcggtt tgtgtagcac atcgtccata
    26761 ccttgtgctt ggtactcctg ccggctttgg atcacatttg ccgtcaaagc aaccaacagc
    26821 ggtaaatagt caatttcctc gttttcatat tgcaatctta attgctgtgc aatttcaaaa
    26881 ccggtggtat ccggcagttg aatatcaagt aaaatcagat cgtagctgtt ctgtgcaaaa
    26941 tgttggaacg tttcttcacc actcattgct acatcaacca cgcaaccgat tttctccaac
    27001 attgctcggg caaccaccac attcatttca atgtcttcta ccaatagcac cttaagggaa
    27061 tgttgctgaa tagcaaatat cggcttggtt tccgtgcttt ctgcctgcac agtgagggta
    27121 aaagttgagc cttgattttc ttggcttgcc accaccaaat caccgcccat tagcttcgca
    27181 atgcgtttcg agaccgataa gccaatcccg ctaccttgcg cttttttctc tttagagttt
    27241 tccgcttggt agaacatatc aaaaattttg cgttgatctt tttccggaat accgatgcct
    27301 gaatccgtca ccgcaaagct aaactgttct ttatctaatt ggtaaatttc cagcaaaatt
    27361 cgaccgcttg caggggtaaa tttcaccgca ttgctgatca aattccataa aatttggctc
    27421 aagcgtgcgt ggtcgatata gatatacttc ggcaaatcag gcggatactt cacttcaaaa
    27481 ttaatctgct tattgcccgc cataaaatgc ccaaaattag caatatcgtg aatgagttgt
    27541 tcaaattcca cctcttttct taccaattca attcggctac tatcaatttt ttctaaatca
    27601 ataatatcgc caaaaatatg agccaatgca gtggcactca tattgatagt ttttagatat
    27661 tcttgctgtt tttcggtggt tttatcatct aacaaaattt ggctcaagcc gataattcca
    27721 ttaaggggag tacgaagttc gtgactaatg gtcgccatta aaatgctttt atcacggctg
    27781 tttttttcta atttagcgtt aagataggca tcttgttccc ggagttcttc caaatctctt
    27841 actgcttttt ctaatttcaa gcgagatatt tcaagttttt ccaccaataa cgtgaagaaa
    27901 taaagcacaa aaggcgcaga aattaaacca aaagcgatgg agcgtaaaat atccaccacg
    27961 actactcgcc caataaaaag ataggttaag ctactttgaa ttaaaattgc cgaaagagcg
    28021 accataaaaa agcctaaaag agaagctttt aaccgcccta gctttaatac ccaattaata
    28081 tatttttggc taaatttttt aacttgcata cgacctcaaa acaaaaagca gaccatcaga
    28141 tctgctttat tttactctat tttttacttt ttgcctttga ctagctcatc agcccatagg
    28201 aataattcat ttacatcata atcacctgaa tggggtacat tccacggggt ttcataatta
    28261 acatttttgc ctgccatttg cagttttatt gctaagattg cagaaattgc cagcgaggta
    28321 tctctatctg ccgttcccac cctaatccgc caatgttccg cagcatttgg gttatccaaa
    28381 tagtgcatcg ggttcatccg tttcacgatt tgcggatcgg ctaaattgag atctttattg
    28441 gcagaacgtt ccgcactata aagcgtaaaa tggcggttat tttccgtgtc tgtgccaaat
    28501 aaattattct cgcccgaact tccatttaac gcatcaaatg caggtggtga tttcatccgt
    28561 ttatctgaaa acacataacc aaaccagtcc acactgctga ctttgccttt ctcaaatgaa
    28621 agccaactaa tttgttgaaa ggctttttgc tcttcgctat cttgaactaa acctctatag
    28681 gctttatttg cagccgtttt taccacttca gataaataat ctttaaacga gccgttgcct
    28741 tttggatcaa gtgttaaagg attgcctttc tcatcaacca aatgcaaact gttcaaataa
    28801 gtcggaaagc gttctgctaa ttcattagaa actttaattt ccgcctcatt taatgagcct
    28861 tcaattttcg gctttggttt tggttttgag cggtcgttaa actctgctgc atttaatcga
    28921 ctcatatcga ttcggctata ttcattgaca ccattaaatt gccattcata cgccatatcc
    28981 gcattttcaa ggttggtaat tgggcaatag gcagaaactg caaaaatttt gtcactggca
    29041 ttcaatgccc ccgcctcttt caaataaggc tcatagtcgt aatgatcagc tgaagctcct
    29101 aacaaagtag ataatgctcc tccggcactg gtgccgttag agataatttt atttgcatcg
    29161 cccggcattt tttcatcatt agcatgcaga taccgcactg ctgattttga atcaactacg
    29221 tagaatcatt caaataacat tcacaaatac atagttatta tgatgtatcc agccaataca
    29281 tccactggga ttttccatcc gaatttcgga caatcctgat cttacacatt ctttcagatt
    29341 tgtaaagtct gaaaatcatt tttatgcttg attttacttg aaagtatcta tcttggtctg
    29401 acattattcc gtcttattac agctctttga acataaaatc gactcatgtt tgtttacatt
    29461 ctaaatatat tttctgttta aatcgcaaag agtttatcaa aagatgaagt cgatcatctc
    29521 atcgcgtctg cctggttcat ttttgcatga tcattgat
//
LOCUS       DANLZD010000010        28753 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.010, whole genome shotgun sequence.
ACCESSION   DANLZD010000010 DANLZD010000000
VERSION     DANLZD010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 28753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28753
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.010"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            104..1651
                     /gene="sbcB"
                     /locus_tag="PXE26_000311"
     CDS             104..1651
                     /gene="sbcB"
                     /locus_tag="PXE26_000311"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease I"
                     /protein_id="HDL5592937.1"
                     /translation="MSDKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVM
                     FFCKQTPDYLPSPEAVMVTGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIR
                     YDDEMTRYTFFRNFYDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSF
                     KLENLTKANGIAHENAHDAMSDVYATIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLID
                     TGEMTPLVHVSGMLGNYRGNTAWVVPLAWHSTNQNAVIVCDLSGDMNGLLTENAEVLR
                     QRLYTKRDELAENELPVPLKLVHINKCPILAPAKTLLPENAERLGIDRALCLENLKTL
                     KAQKSLIREKVIEIFNEERTFEPSTNVETTLYDGFFSPADKNNMAILRTLPPEDLANH
                     GLKFEDPRVEALLFHYRARHYPQTLSRAEQIKWQKHCNQQIEAKAAQFAQSIDDLFQQ
                     HHDNPEKVKLLENLTAYAEQISQQQAVIYRQNVAKDEKLLSELNRVAEQPLDKTEKLK
                     MLKELIK"
     gene            1648..2247
                     /locus_tag="PXE26_000312"
     CDS             1648..2247
                     /locus_tag="PXE26_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA glycosylase"
                     /protein_id="HDL5592938.1"
                     /translation="MTMDNLPLEQHPFDPILPEQATVVMVGTFPPTSEKRCMEFHYPN
                     FQNDMWRIMGNIFYADPNYFRVGEEKRFDPIRIEAFLREKGVALCSSAKTAIRLKGNA
                     SDKDLKIVDPIDMDELLLKLPKLKWLFTTGGLATDTLLGLLPEKHKAPKTNEWVVYPY
                     SATRELYLYRLPSTSRAYPLSLANKTEAYRQFFRTAGLI"
     gene            2259..3077
                     /locus_tag="PXE26_000313"
     CDS             2259..3077
                     /locus_tag="PXE26_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HDL5592939.1"
                     /translation="MKYDLHAHSTASDGVLSPTELVQRAVEQGVTMLALTDHDTISGI
                     QEAKNFAQNQPLELISGVEISILWQEKSIHLAALNIDENNEELVKFLDNQAQLREERA
                     VEIGEKLAKVGIANAYEGAKALATGEVTRAHYGRFLYEQGYVRNIEHAFKRYLGMGKP
                     AYVKPRWSSLEDAVNVTHTSGGVISIAHPLRYKMTARWIRRLIADFKQAGGDGIEVSG
                     CGQTPDQRQLLARWAKEFDLYGSVGSDFHYPTGWIELGKSLELPQECKPIWTLF"
     gene            complement(3113..3732)
                     /locus_tag="PXE26_000314"
                     /pseudo
     CDS             complement(3113..3732)
                     /locus_tag="PXE26_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596976.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Fe2+/Pb2+ permease"
     gene            complement(3743..4939)
                     /gene="efeB"
                     /locus_tag="PXE26_000315"
     CDS             complement(3743..4939)
                     /gene="efeB"
                     /locus_tag="PXE26_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deferrochelatase/peroxidase EfeB"
                     /protein_id="HDL5592940.1"
                     /translation="MMAETTSRRDFLKHTALVGAGLLSAPAFALESRQISEKSQNQYD
                     FYGKHQAGIVSPAQKHIYFLVLDLDTTDIAKVKTLFQNWTEYSRNLTLGKNVKPYSAN
                     AYVPPADTGEADSLSAQNLTLTFGVSANFFTKLGIEKHKPKELNDLPHFPRDQLQAEY
                     TGGDICIQACADDPQVAFHAVRNLVRVARGEIKMKWSQMGFNSFANQDTPRNLFGFKD
                     GTANAESLKDQENTVWVQQEGWLKGGSYLAVRRVKMFLETWDRTHLQSQEETFGRHRD
                     SGAGIGHQHEFDKLDLAKKDEKGNAVIPEVSHAHLANKTGLKILRRSFSYSSGIDDKG
                     QFDSGLLFVSFQQSPEQFIKIQNALGNVDKMNEYITHIGSGLFACFAGVKDENDYLGK
                     ALFDLI"
     gene            complement(4950..5795)
                     /locus_tag="PXE26_000316"
     CDS             complement(4950..5795)
                     /locus_tag="PXE26_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005823485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EfeM/EfeO family lipoprotein"
                     /protein_id="HDL5592941.1"
                     /translation="MFLLKGNFYAFNQTCFCTFALSGFFVATQAAALDLTKETEAYKQ
                     FVVEQIDQLVTDTEKFVGYLNKGDVQKAKKIYPLARMYFERSEPIAESFGDLDPRIDA
                     RLADLAEEGKTEKDWSGFHKIEKVLWQKNTTKGTKATAEQLLKDVKELRAKIPTAEVT
                     PEPMITGAVDLLNEVSTTKVTGEEEIFSKTDLYDFKANIEGAEKIYEIFKTQLEQIDA
                     KLSTEIGSRFAAVNALLAKHNKSKTGYDYVPYNKLSKADIKALAEAVNQLGEPLAQLG
                     VLLNK"
     gene            5958..6194
                     /locus_tag="PXE26_000317"
     CDS             5958..6194
                     /locus_tag="PXE26_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HDL5592942.1"
                     /translation="MSRTTSVTLAEPLSQFVNQMVESGRYGSTNEVISAALKILEAQE
                     QQLIQLRALIDEGLESGVSEETVQSIISKAKRNV"
     gene            6433..8451
                     /gene="uvrB"
                     /locus_tag="PXE26_000318"
     CDS             6433..8451
                     /gene="uvrB"
                     /locus_tag="PXE26_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HDL5592943.1"
                     /translation="MSKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVT
                     GSGKTFTIANVIAKLNRPAMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPE
                     AYVPASDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
                     MLHLQVGAMIGQREILSRLAELQYTRNDQAFQRSTFRVRGDVIDIYPAESDEVALRVE
                     LFDDEIENLSLFDPLTGHSLGKVPRYTIYPKTHYVTPRERILEAIEQIKVELADRRTY
                     FIKENKLLEEQRIAQRTQFDIEMMNELGYCSGIENYSRYLSGRKEGEAPPTLFDYMPA
                     DGILVIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLSPQT
                     IYVSATPGAYELEKNPDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIHKRVAVDER
                     VLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVERVEIIHDLRMGMFDVLVGINLL
                     REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRITNSMQKA
                     ITETERRREKQMKYNEEHGITPQALNKKVGELLDIGQSDKPKRGKQAVKKAENSATDY
                     KPKSRKELEKELKTLEQQMRDFAKDLEFEKAAAVRDKLQHLKAYLLEV"
     gene            8454..8864
                     /locus_tag="PXE26_000319"
     CDS             8454..8864
                     /locus_tag="PXE26_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592944.1"
                     /translation="MISRSLFSKLILFAKIVIFSQLVFMVVIWIAHHIMREYSNPFER
                     FGTLFNNVFLTFIIPMMVSSAVIVYKGYTQKNEDKVFWIYMGFFLIWILGFIYFEPAV
                     YDKSLKISGAGFGAMLSIIICSKLLPKETNKEQL"
     gene            complement(9085..10173)
                     /gene="purK"
                     /locus_tag="PXE26_000320"
     CDS             complement(9085..10173)
                     /gene="purK"
                     /locus_tag="PXE26_000320"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HDL5592945.1"
                     /translation="MQKSAIYPPVYVLGNGQLGRMLRYAGAPLDIEVKPLAFDAPVFD
                     IEPNSIITAEIERWADTPLTQLLGNHPNFVNLNVFGKLADRFTQKSLLDELHLATSKW
                     QLLENAEHWQDIFQHIGEKVVVKRRTGGYDGRGQWIVTQDSIHQITPELFGEVIAEKF
                     IPFEGEISIVGARFRDGSTRFYPISHNLQQNGILRYSVSDVNLPNQALYQQQAEQMLA
                     TVMQKLEYVGVMAMECFVVGDKLLINELAPRVHNSGHWTQLGCAISQFELHLRALLDL
                     PTPALDQIAPSVMVNLIGIEHNKQWLSLPFSQLHWYGKEVRAGRKVGHINLTHTDKNG
                     LIELLEQLRPSLTEDFHSGLDWAINKLK"
     gene            complement(10192..11157)
                     /locus_tag="PXE26_000321"
     CDS             complement(10192..11157)
                     /locus_tag="PXE26_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HDL5592946.1"
                     /translation="MSKKLLILHTGGTISMKEGEDGKVSPSNENPLLAALERLNHPAK
                     LAQESLFNIPSPHINIEHWQQLKMRIEKAVNEENVDGVVITHGTDTLEETSYFLDLAL
                     SVNIPVVITGAMRSSNELGADGLINLQSAILVALNEESRDKGVLVVMNDEIHNAKFVT
                     KTHTTNVATFQTPTFGPCGLVTKESVIFFQKLTTYERYPIQQVTKANVQLLKAYAGMD
                     SFLLEQLAKSKCDGVVIEALGAGNLPPSCLAGIEALVNANIPIVIVSRAFNGITQDVY
                     DYVGGGKQLKQKGIIFTKGLSGQKARIKLMVLLSQTLDKPLSDYF"
     gene            complement(11172..11669)
                     /gene="purE"
                     /locus_tag="PXE26_000322"
     CDS             complement(11172..11669)
                     /gene="purE"
                     /locus_tag="PXE26_000322"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HDL5592947.1"
                     /translation="MPNKAEIAIVMGSKSDWATMSEATQILDQFGLSYHVEVVSAHRT
                     PDKLFSFAETAETNGYKVIIAGAGGAAHLPGMIAAKTIVPVLGVPVKSSMLSGVDSLY
                     SIVQMPKGIPVGTLAIGPAGAANAGLLAAQILAAFNPDIAEKLRIFRQTQTQMVLDNP
                     DPRVE"
     gene            11843..12487
                     /gene="sspA"
                     /locus_tag="PXE26_000323"
     CDS             11843..12487
                     /gene="sspA"
                     /locus_tag="PXE26_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stringent starvation protein A"
                     /protein_id="HDL5592948.1"
                     /translation="MTSSINKRSVMTLFSDKNDIYSHQVRIVLAEKGVPYEIENVMLG
                     SISEDLLELNPYGNIPTLVDRELVLFNPRIIMEYLDERFPHPPLMPVYPVSRGQCRLN
                     MYRIEQDWYSQIDIVNKDPESAEGKKALAQLKEDVLALAPIFAAKPYFMSDDFSLVDC
                     YIAPLLWRMQILGVKFSGATAKPINAYMTRVFQRDSFIQSVGGEAPKHLMDDKD"
     gene            12487..12894
                     /locus_tag="PXE26_000324"
     CDS             12487..12894
                     /locus_tag="PXE26_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HDL5592949.1"
                     /translation="MKPLRPYLYNAYYNWIIDSDNTPYLLVNAEFPDVDVPVEFVKEG
                     KIILNISPRSIGQYIVADEYISFSARFQGMLRDIYIPFGAMVAIYAQETGDGIMFQEE
                     AYYTEEAYQARVRAVEQPKKIKAKKTSTLKLVK"
     gene            13091..14050
                     /locus_tag="PXE26_000325"
     CDS             13091..14050
                     /locus_tag="PXE26_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5592950.1"
                     /translation="MKFHKTLLVTLLSSLSVAALAQDKIQNVAITAIVEHPALDSIRK
                     GVIEELAREGFVDGKNIKIDYQSAQGSTATAAQIARKFVGDKADIIIPITTPSAQPVV
                     AATRSIPIVFSGVTDPVAAKLVKSWEPSGTNVTGISDHKAMAPQVKLIQTLVPDLKAV
                     GYVYSAGEVNSAIVLEELKQEAQKQGFTIVPVAVQRSADIGTAARSLNGKVQAIYISE
                     DNAVVSAYEALHKAALEAKIPVIAADRDTVQRGAVAAYAVNQYDIGVATGKVAARVLK
                     GEKAGTIPIQEVSKLELSINTKTAKELGITIPEVLIKEAKQTF"
     gene            14130..14390
                     /locus_tag="PXE26_000326"
     CDS             14130..14390
                     /locus_tag="PXE26_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005718542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HDL5592951.1"
                     /translation="MGWIAAIIVGAIIGWIASAVMKSEGGLCKNIIIGILGSSLGRWV
                     FGDVLGIGSAYSAGDFNIVGIFFGVLGAALLIFILRKLSIIN"
     gene            complement(14440..15330)
                     /locus_tag="PXE26_000327"
     CDS             complement(14440..15330)
                     /locus_tag="PXE26_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5592952.1"
                     /translation="MDKLNAISLFCKVIETQSFTQAAQQAQISLPMASKLVAQLEEHL
                     NVRLLQRTTRKITPTEAGLLYYQQCLPILNELKEADASVSNINSTLQGKITMSVPMDF
                     GSRFIAPYLGKFMEDYPNLALHIEFSDRRVDVIAEGFDLVLRIGSLADSSIVAKKIAD
                     SHLVLVASPDYLARFGEPKGLEALVERDCLLYEYHPQWQFSQQGQKMQIKPQGKIYSN
                     NGYALVQMAKAGLGIINIPKFLIKHELKNGELIPIMPFLTQEPLQISLLYPNRRYLSP
                     KVRILIDFFTQLMQEQKEYI"
     gene            15460..18066
                     /gene="topA"
                     /locus_tag="PXE26_000328"
     CDS             15460..18066
                     /gene="topA"
                     /locus_tag="PXE26_000328"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HDL5592953.1"
                     /translation="MGKSLVIVESPAKAKKINQYLGSNYVVKSSVGHIRDLPKSGSDE
                     KTEKAKPISTKGLTAAEKAKIKAEKERVALVKRMGIDPYNGWKANYQILPDKEKVVSE
                     LKSLAKKADHIYLATDLDREGEAIAWHLREIIGGDDSRFSRVVFNEITKDAIKKAFDD
                     PQPLNIDRVNSQQTRRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREI
                     KAFQSEEFWTILANTQINRKKLPLELTTYKGKKFSASNEAEANVAVRALEQSDFIVSN
                     IEAKETSSRAAAPFITSSLQRAASTRLGFGVKKTMMLAQRLYEAGYITYMRTDSTNLS
                     REALAMARGYIQDNFGANYLPEKANVYRSKDNAQEAHEAIRPSDVNVKMADLKGMDKD
                     AERLYDLIWRRFLACQMLPARYDSTAVTVSAGDYELKANGRVLRFDGWTKVLPVQGKN
                     PEDQELPAVELHQKLTLDEIVPSQHFTKPPARFNEASLVAELEERKIGRPSTYASIIS
                     TIQERGYVRTENKRFYVEKIGEVVTDRLNESFKDLMNYDFTANMEEVLDQIAEGSKNW
                     KEELNTFFKHFSEELSQAELDELEGGMKPNSLVPTDIDCPTCGRKMAIRTASTGVFLG
                     CTGYALPPKERCKTTMNLIPEAEFFNVLDSDSETKALMARKRCPKCDSAMDSYVIDAE
                     RKLHVCGNNPNCDGHIIEQGSFKIKGYDGPVVECDKCGSDMHLKLGRFGKYMGCTSCD
                     NTRKILKNGEVAPPKEDPIAFPELKCEKADAYFVLRDGASGVFMSAHNFPKVRESRAP
                     KVVELAQYRERLPEKLQYLADAPQQDPEGNEAIIRFSRKEKRQYVTSEKNGKATKWIV
                     DYLDGKWVERKK"
     gene            complement(18116..19054)
                     /gene="yvcK"
                     /locus_tag="PXE26_000329"
     CDS             complement(18116..19054)
                     /gene="yvcK"
                     /locus_tag="PXE26_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine diphosphate-N-acetylglucosamine-binding
                     protein YvcK"
                     /protein_id="HDL5592954.1"
                     /translation="MENTDIIPFKPTRHHYLNQLNAVVALGGGHGLGRLLSALSFLKE
                     RLTGIVATTDNGGSTGRIRSQQGVIAWGDLRNCLNQIIVKPTIASRLFEYRFAGTGEL
                     AGHNLGNLILTALENMQIRPLEGINLVRELLHVRSQLIPMSEIPVHLIAQLHSGESVF
                     GEVQIDSLAETPQHLALDTMVVATPEAISAIQSAELILLGPGSFFTSIMPNLLVAGIA
                     NSIAQSKARVVFIDNIGQEHGPAGQLSLNQRIEWMENCIGQARINAVITTDDAGSELP
                     EHIQILRKNLSANDVYYRHDRNKLSKAIDELLAQNI"
     gene            complement(19068..20144)
                     /locus_tag="PXE26_000330"
     CDS             complement(19068..20144)
                     /locus_tag="PXE26_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDL5592955.1"
                     /translation="MFQMLQDWYRKKFTDPQIVVLFSILLIGFGIIYFFSDLLMPLLV
                     ALVFAYLLEWPIRFLSSKLKLPRTLSVILVLGGFIALLSFLGVVLLPSLWNQAVTFIQ
                     DLPSMFNLLNAWLQALPEHYPELVDYATLDSIVNTAKSNILSMGESLLTLSINSIISL
                     VGLGIYTFLVPLMVFFLLKDKIVLMRSFSKVLPQNRRLATRVWFEMQQQIANYIRGKF
                     LEILIVGVVTYIIFLFFDLRYPLLLSVAVGISVLVPYIGAVLVSIPVMLIALFQFGLS
                     PDFYYLMLAFIISQLLDGNLLVPFLFSEAVNLHPLTIIIAVLIFGGLWGFWGVFFAIP
                     LATLVKAVLQALPSAQSDAIILEK"
     gene            complement(20175..20930)
                     /locus_tag="PXE26_000331"
     CDS             complement(20175..20930)
                     /locus_tag="PXE26_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5592956.1"
                     /translation="MKKEEVGHHFLARLGKTRLRPGGKLATDWLIANGDFDKNKKVLE
                     VACNMGTTAIQLAQQFECQIVGIDLDEDALEKARKNIKENHVEHLIQVQRANATKLPF
                     DDESFDIVINEAMLTMLPLEAKEKAIREYFRVLKPNGFLLTHDIVIQDKDSDTLLAEL
                     RDAINITVSPLAKADWKSLFQRCGFRNVDTFSGEMSLLSPKGLIHDEGVLGAMKIIGN
                     ALKPENRETFNKMYKLFNDPDKKLGFIAVCSQK"
     gene            21082..21291
                     /locus_tag="PXE26_000332"
     CDS             21082..21291
                     /locus_tag="PXE26_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome alternative rescue factor ArfA"
                     /protein_id="HDL5592957.1"
                     /translation="MSKQKNDYLHQRGQIKESAVKALVTDPLFRQRVERNRKGKGSYR
                     RQEKHKKTIYGQKETPFKNIRLESF"
     gene            complement(21340..22062)
                     /gene="bioD"
                     /locus_tag="PXE26_000333"
     CDS             complement(21340..22062)
                     /gene="bioD"
                     /locus_tag="PXE26_000333"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HDL5592958.1"
                     /translation="MPSLFITGTDTNVGKTVVTRAIIQTLTKHSFPVIGYKPIACGGD
                     DSLPTEPTQYDYATEDNSDVLTILDSCPTNVSYRDINSYTFIHSSTPVFAALDAVHHI
                     QLEKLNTDLKRLENAYPNVVVEGTYGWLTPINKDYYFADWVMQNNMPVVLVVGIKEGC
                     VNHALLTANEILQRGVKLVSWVANRVNPGLRHYHELIELLTQKINAPLLGQIPYMGHP
                     EHKELSSYIQNPEPLLAYFSKP"
     gene            complement(22110..23297)
                     /locus_tag="PXE26_000334"
     CDS             complement(22110..23297)
                     /locus_tag="PXE26_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HDL5592959.1"
                     /translation="MFSDNKALHLGKIYHLIEQFELISRTDLAKLSGLAPASVTNLTK
                     ILIDNHFILERTVQTTLSRGRPSVGLAVSNFFWQLLCVTVSSHKIEISLCKLNGAEIY
                     KQDYTISAENYPRLNDFILNFITNFRQLYCVNTSQLLAVSISVIGKINAEKDSITQLG
                     NKNIFCNITSKLSPLFHCPILLSEHFQLWLLAESTVGSLINQDNAIFLQLDDTVNLSV
                     LLSGSLLSKQSKMNVDNMLMPRFSHLSDEIFPELDEIHRYKLVNQVTFPAIVRLIDRY
                     LPNNLKSQEQKISWLCQKIDENQPLALAILSHITDNLAYALMNLVNIFSSEKIMLNSP
                     LIKIKEPLFTQISEKLHKNLLQTNLKIDLVTSQYDWNSPLIACSAIKQGIYDGNLIKD
                     RIN"
     gene            23431..24549
                     /gene="rnd"
                     /locus_tag="PXE26_000335"
     CDS             23431..24549
                     /gene="rnd"
                     /locus_tag="PXE26_000335"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HDL5592960.1"
                     /translation="MESLIHYQWVETNEQLEAVCEQARKTKVVALDTEFIRTRTYYPI
                     LGLIQLFDGQQVSLIDPNTISDFSPFVSLLADKNIIKVLHACSEDLEVFEYQFKQLPE
                     PMLDTQVMAAFAGIGISMGFAKLVSHYLNIELDKGASRTDWLARPLSAEQLQYAAADV
                     WYLLPVYEKLAQALTKSTWQSAVAEECVALLKKAKQPINKEKAYKNIANAWRLNREEL
                     AILQVLAKWRIEEAQKRNLALNFVVKEASLVQIAKSCPKHTSSLLEFMHPNEVRIHGK
                     KILWLVEQGKAIESNDYPELIQRLVDEKGYKYYMQAMLQKLLEIQPLDIVPELVASKR
                     QLNQLFKWYIDGKPSEKIPELLIGWRKPFGEQLLSVLS"
     gene            24606..25088
                     /gene="lrp"
                     /locus_tag="PXE26_000336"
     CDS             24606..25088
                     /gene="lrp"
                     /locus_tag="PXE26_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005695827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-responsive transcriptional regulator
                     Lrp"
                     /protein_id="HDL5592961.1"
                     /translation="MENKKPPKALDAIDLKILNELQRNGKISNIELSKRVGLSPTPCL
                     ERVKRLEKNNVIMGYKALLNPELLDAPLLVIVEITLVRGKPDVFEEFNKAIQQLDEIQ
                     ECHLVSGDFDYLLKTRVADMVSYRKLLGTTLLRLPGVNDTRTYVVMEEVKQTNYLLLK
                     "
     gene            25099..27759
                     /locus_tag="PXE26_000337"
     CDS             25099..27759
                     /locus_tag="PXE26_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HDL5592962.1"
                     /translation="MIEQLKPHLKGKENLIKLMLLLTGFLGVYLLIAWASYSPLDNAW
                     SVASSITQTTLNKTGHFGAWSIDMLYAMFGKVAVLVPIALIIFSIYSLGMGLSVDMKW
                     KTVFIRLASFLLLMVGLAGLFSVLFSNSAYYLSGGFVGGVWETILSDTIGQFGALLIA
                     MLFTIAGLYFCSVQSLLPILTQFYEWIMAKSEESKTAESLQHLQNTEQKQPLVTENEA
                     VEVVDDHKPQFTDISAFKRPNISGLRHSENVEIDNREMYEIERDLELPTINILIQPDM
                     VNQVAEQATSGYELPNEESNVLQMPTIRLNTAIENEVDTIENSSSLEDLKIAESMLPQ
                     IQLDNDIEDTEEAIDDVREITPEFMVTPPKAMKDVSEQPAYPKGYGDTLIHPLLQRKV
                     ITEKPTTPLPTLDLLDKAPIQSQQITEQEIRETSVRLEAELANFGVKATVEDVLVGPV
                     VTRYEIQPAAGVKASKITNLASDIARGLMFKAIRITEVIPNKPYMGIETPNKHRETVW
                     LRDVLDSDEFRNTTATLPMALGKDISGEPVVVDMAKMPHLLVAGQTGGGKSVGVNTMI
                     LSLLFKLTPEQVRFIMIDPKVVELSIYNDIPHLLTPVVTDMKKAANALRWAVEEMERR
                     YLLVSHLQVRNIEGYNAKIDQAAAMNLPIPDPTWRPGDSMDSLPPPLQKLSYIVLIVD
                     EFADLMMSAGKEVEEYIMRIAQKARAVGIHLILATQRPSTDVITGVIKANIPSRIAFT
                     VASQIDSRTILDSGGAEALLGRGDMLYSGAGSPDIIRIHGAFMKDEEVQRVADNWRAR
                     GKPNYLESIVESRSEEADGKNDGGTGDLDPLFDEVVEYITETGSVSISNIQRRFSLGF
                     NRAARIVDQMEAQGIVSEPLKGGKREVLAR"
     gene            27911..28750
                     /locus_tag="PXE26_000338"
     CDS             27911..28750
                     /locus_tag="PXE26_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HDL5592963.1"
                     /translation="MRLDDIKESKNVEDRRFNNVGRTKVGRGKGGILTFIIVLVGAYY
                     GVDLTGLMGGGVEYEEQTSALNESEEKQLRTLSAKVLTTTENIWTSYFQQNGLTYKEP
                     SLVLYRGAIQTACGTGQSAMGPFYCPVDQKVYLDLSFYDDMRKKLRASGDFAFSYVIA
                     HEVGHHVQNLLGITSKTQRAQMKASSKAEANQISVNVELQADCFAGVWGHQLAKANRL
                     EEGDVEEAFNAAQAVGDDRLQQQSRGYVVPDSFTHGSSAQRLAWFRKGLTTGNPAVCN
                     TFN"
BASE COUNT         8688 a         5447 c         6183 g         8435 t
ORIGIN      
        1 ttttagcatt tgcaaatttc taacggaaat tgaccgcttg tattccctcc tttctgcctt
       61 actgtgctac aatcagccca attttttcta acaaattgaa cgaatgagcg ataaattctc
      121 ttttttcttt tacgattatg aaagtttcgg cgtgagtccg gcgttagatc gtccggcaca
      181 atttgccggt attcgaaccg atgcggattt taatattatc ggtgaaccgg taatgttttt
      241 ttgtaagcaa acgccggatt atttacccag ccccgaagcg gtgatggtta ccgggattac
      301 accgcaacaa tgtaacgctg aaggtgtatc tgagccggaa tttgcagccc gaattcacgc
      361 tgaatttagc cgagcgaata cttgtactat cggttataac aatattcgtt atgatgatga
      421 gatgacccgt tataccttct tccgcaattt ttacgatcct tacgaatata gctggaaaaa
      481 cggaaattct cgttgggact tgttagattt agtccgtgcc tgttatgcgt taagacctga
      541 tggtattgaa tggccaacag atgaaaccgg tatgccaagt tttaaattgg aaaacctcac
      601 caaagccaat ggcattgccc atgaaaatgc acacgatgcg atgtctgatg tgtatgccac
      661 catcgcaatg gcaaaattaa ttaagcaaaa acagccaaag ttgttcgatt ttttctttaa
      721 tttacgcagt aaaaaagaag tagagaagtt aattgacact ggtgaaatga caccgcttgt
      781 gcacgtttcc ggtatgctgg gcaactatcg aggaaatacc gcttgggttg tgccactggc
      841 ttggcactca actaatcaaa atgccgtaat tgtgtgtgat ttatcgggcg atatgaatgg
      901 cttattgact gaaaatgcag aggttttacg tcagcgttta tacaccaaac gagatgaatt
      961 agccgaaaat gagttacctg tgccgttaaa attagtgcat attaataaat gcccgatttt
     1021 agcaccggca aaaaccttac tgcctgaaaa tgcagaacgt ttaggcatag acagagcttt
     1081 atgtttggaa aatttgaaaa ctttaaaagc acagaaatcg ctgattcggg aaaaagtgat
     1141 tgaaattttt aatgaagaac gcacgtttga gccttcgacc aatgtagaaa ccactttgta
     1201 tgacggcttt ttctcgcctg cggataaaaa taatatggcg attttacgca cgctaccgcc
     1261 tgaagattta gccaaccacg gcttgaaatt tgaagaccct cgagtagagg cgttactatt
     1321 ccattaccga gcaaggcact atccacaaac actcagtcga gccgagcaga tcaaatggca
     1381 gaaacattgc aaccagcaaa ttgaggcaaa agcagcgcag ttcgcccaat cgattgacga
     1441 cttgttccaa caacatcacg acaacccgga aaaggtaaaa ttattagaaa atttgaccgc
     1501 ttacgccgag cagatttcgc aacaacaagc ggtcatttat cgtcaaaatg ttgcaaaaga
     1561 tgaaaaattg ctgagcgagc ttaacagagt agcggaacag cccctagata aaaccgaaaa
     1621 gctcaagatg ttaaaagagt tgattaaatg acaatggata atttaccgct agaacagcac
     1681 ccgtttgacc ctattttacc tgaacaagca acggtggtaa tggtcggcac ttttccacct
     1741 acatcggaaa agcgttgtat ggaatttcat tacccgaatt ttcaaaatga tatgtggcga
     1801 attatgggca atatttttta tgctgaccct aactattttc gagttggtga agaaaaacgc
     1861 tttgatccga ttcggattga ggcgtttttg cgagaaaagg gcgttgcgct ctgttcttcg
     1921 gcaaaaacag cgattcgttt aaaaggaaac gcttcagata aagatttaaa aattgttgat
     1981 cctatcgata tggacgaact gttgctcaaa ttacccaaac tgaaatggct atttaccaca
     2041 ggtggtttgg caaccgatac gttgctcggt ttattgccgg aaaaacacaa agctccgaaa
     2101 accaacgaat gggtggtcta tccttattcc gccacaagag aactttattt atatcgcctg
     2161 ccttcgacgt cgagggctta tccactcagc ttagccaaca aaaccgaagc ctatcgccaa
     2221 tttttcagga ctgccggctt aatttaagga taaataaaat gaaatatgat ttacacgccc
     2281 acagtaccgc ctctgatggc gtactttctc ccactgaatt ggtacaacgt gcggtagagc
     2341 aaggggtaac aatgctagct ttaactgatc acgatacgat ttcgggcatt caagaagcga
     2401 aaaattttgc ccaaaatcaa ccgcttgagc ttatctctgg ggtggaaatt tcgattttat
     2461 ggcaagaaaa aagtattcat cttgcggcgt tgaatattga tgaaaacaac gaggagctgg
     2521 tgaagttttt ggataaccaa gcccaattaa gggaagagag agcggtcgaa attggtgaaa
     2581 aattagcaaa agtcgggatt gcaaatgcct atgagggggc aaaagcgttg gcaacagggg
     2641 aagtaactcg ggcacattat gggcgttttt tgtatgaaca aggctatgtc cgcaatattg
     2701 aacacgcctt taagcgttat ctgggaatgg ggaaacctgc ctatgtgaaa ccgagatgga
     2761 gtagtttaga agacgcggtg aatgttaccc acacctcagg cggtgtgatt tcgattgctc
     2821 acccgctacg ctataaaatg actgctcgtt ggattcgccg tttaatcgca gatttcaaac
     2881 aagccggagg cgatggcatt gaagtatcag gctgcggaca aacacctgat caacggcaat
     2941 tacttgcccg ttgggcaaaa gagtttgatt tatatggctc ggtcggttct gatttccact
     3001 acccaactgg ctggattgag ctcggtaaaa gtttggaatt accccaagaa tgtaaaccga
     3061 tttggacgtt attttagtgt tatcggggca aataatttgc cccgattttt tactatttca
     3121 ctttaacttg cttaaagtct gccattacca cacctagttc ggaaaccagt tcactgattt
     3181 ttgccatatc cggcttttca gcgttcagat taattcgcat taaaccaaga atacgctcaa
     3241 atttgccata atggggaaga ctgatttccc gtactgcttt ttcctgtttt acccaattct
     3301 taccaaactg ataagccgcc catttgattt tggcgatttc ttgagttggc acggtttgag
     3361 caagttctgc ataaagcggc gtcatttttg ccacaaaatc ctgatgtttt tcagcataac
     3421 cgctagggtt ttgttctttt tcaaacgcat agagttttta gaaaggctct ctaagttttc
     3481 agcattgggt gtttcaatcg cttttttcag agcggtctgt acttcaactc cggcgaggga
     3541 atcgtgctgg ctaatctgct caaaatcgtg ctgtaaagcg gtcaaatttt ggctggattt
     3601 tgcaaattcc ccttttttac tctctgccat tgcatcggaa agctgaacaa ataaggggct
     3661 gacattcact ttggcaagca atcctgtact cgaaaagagt aacggaatta gcactaatgc
     3721 ttttaatttc atttcctttt ccctaaatta aatcaaacaa cgctttgcca aggtagtcat
     3781 tttcatcttt cacaccggca aaacaggcaa ataaaccact gccgatatga gtgatgtatt
     3841 cattcatttt atccacattg ccgagagcgt tctggatttt gataaattgc tccggacttt
     3901 gttggaaaga gacaaacaac aaccctgaat caaattgccc tttatcatca ataccgcttg
     3961 aataggagaa tgaacggcgt aggattttca gccccgtttt attggcaaga tgagcgtgtg
     4021 aaacttccgg aattactgca ttgccttttt cgtctttttt ggctaaatct aatttatcaa
     4081 attcgtgctg atgcccgatt ccggctccgg aatcacggtg acgaccgaag gtttcttctt
     4141 gggattggag atgggtgcga tcccaagttt ccaagaacat tttaacacgg cgaacggcta
     4201 aataagaacc gcctttgagc cagccctctt gttgcaccca taccgtattt tcctgatctt
     4261 ttaaactttc tgcgttggca gtgccgtctt taaaaccgaa taagttacga ggtgtgtctt
     4321 gattggcaaa ggagttaaac cccatttgcg accatttcat tttgatttca ccacgggcaa
     4381 cacgcaccaa attacgcaca gcgtggaaag ccacttgcgg atcgtctgca caggcttgaa
     4441 tgcaaatatc gccaccggtg tattctgctt gtagttgatc acgagggaaa tgcggtaaat
     4501 cattcagttc tttcggctta tgtttttcaa tgccgagctt tgtaaagaaa ttggcactga
     4561 cgccaaaagt aagagtgaga ttctgtgccg aaaggctatc tgcctcaccg gtatccgccg
     4621 gtggaacata agcattagca ctataaggtt tcacattttt gccaagcgtg aggttacggc
     4681 tatattccgt ccagttttga aacaatgttt ttactttggc aatgtcagtg gtgtctaaat
     4741 ccagcactaa aaagtagata tgtttttgtg cagggctaac aataccagct tgatgtttgc
     4801 cgtaaaagtc gtattgattt tgagattttt cagatatttg tcgtgattcc aaagcgaaag
     4861 caggagcaga caataagcct gctcctacta atgcggtatg ttttaaaaaa tcacggcgag
     4921 aagtggtttc tgccatcatt tttgctccac tatttattta aaagtacgcc aagttgagct
     4981 aacggctcgc ctaattggtt tacagcctct gctaacgctt taatatccgc ttttgacagt
     5041 ttgttataag gcacataatc ataaccggtt ttagatttat tgtgttttgc taacagcgca
     5101 ttgacagccg caaaacgaga gccgatttct gttgagagtt tggcatcaat ttgctctaat
     5161 tgcgttttaa aaatctcata gattttttct gcaccttcaa tattggcttt aaaatcgtaa
     5221 aggtcggttt tagagaaaat ttcttcttca ccggttactt tagtagtaga aacttcgttt
     5281 aataaatcta ccgcaccggt aatcatcggc tcaggggtaa cttctgcagt gggaattttc
     5341 gcacgcagct cttttacatc ttttaataat tgttctgccg ttgcttttgt gcctttagtg
     5401 gtgtttttct gccacaatac tttctcgatt ttatggaaac ctgaccaatc tttctcggtt
     5461 ttaccttctt cggctaaatc tgccagacgg gcatcaatac gagggtctaa atcgccaaaa
     5521 ctttctgcaa tcggttcaga acgttcaaaa tacattcttg caagcgggta aattttcttc
     5581 gctttttgca catcgccttt gtttaagtag ccgacaaatt tttccgtatc ggtaaccagt
     5641 tggtcaatct gttctaccac aaattgttta taagcctcgg tttccttagt taagtctaaa
     5701 gctgccgctt gagtagccac aaaaaagcca gaaagtgcaa aagtgcaaaa gcaagtttgg
     5761 ttaaacgcat agaaatttcc ttttaataaa aatattgcga cataatatcc ttattgcgaa
     5821 ttattcgcaa aaaataatgc tgattttgtg atgtaaatca cattttgttt tgcaaattat
     5881 tgctaaaaat agaccgcttg cttatctaaa ttagagccat tacaatctgc tcaataatca
     5941 ataagatagg aatagtaatg agtagaacaa ccagcgtaac tttagctgag ccattaagcc
     6001 aatttgtgaa ccaaatggtt gaaagtgggc gttatggttc gaccaacgag gtcatcagtg
     6061 ccgcattaaa aatattggaa gcacaagaac agcaactaat tcagctaaga gccttaattg
     6121 atgaaggctt agaaagcggt gtttctgagg aaaccgttca atctattatc agcaaggcaa
     6181 aacgtaatgt ataaactttc tgttagggca gagcgagatt tagcgttact ttattcgccc
     6241 tttgttacgc tgtcattacc accgctcaca ttctatttat tataaaccaa tcccaaaagg
     6301 tatctttatt gttagggtgt tagatccaag aatggatcaa tataagcagt tacaataaat
     6361 ttgcaaaaat cccgataaaa acgaccgctt gcttgtgcta aaataaaccg attttttaag
     6421 acaggatttt ctatgagcaa gcaaggcaaa ccctttatcc tccattctcc tttcaagccc
     6481 tccggcgacc aaccaagtgc gattgccaaa ttgaccgaag gcttaaatga cggcttggca
     6541 catcaaacct tacttggcgt aaccggctcg gggaaaacct ttaccattgc taatgtgatt
     6601 gccaagctca atcgcccggc gatggtgctt gccccgaata aaacccttgc cgcccagctt
     6661 tatgccgaga tgaaagcgtt ctttccggaa aatgcggtgg agtatttcgt ctcttactat
     6721 gattactacc agcccgaagc ctatgtgccg gcaagcgata cctttatcga gaaagatgcc
     6781 tctatcaatg agcagatcga gcaaatgcga ctttccgcaa ccaaatcctt tttggaacgc
     6841 cgagatacga ttgtagtggc gtccgtttct gccatttacg gcttgggtga tgtggacgct
     6901 tatatgcaga tgatgttgca tttgcaagtg ggggcgatga ttgggcagcg tgaaattctc
     6961 tctcgccttg ccgaattgca atatactcgc aacgatcagg cgttccaacg ttcgactttc
     7021 cgagtgcggg gcgatgtgat tgatatttac cctgccgaaa gcgatgaagt agcgttaagg
     7081 gtagagctgt ttgacgatga aatcgaaaat ctgtcgctgt ttgatccgct tacagggcat
     7141 agcttgggca aggtgcctcg ctataccatt tacccgaaaa ctcactatgt gacccctcgg
     7201 gaacggattt tggaggcaat cgagcaaatt aaggtcgagc ttgccgaccg tcgcacctat
     7261 ttcatcaaag agaataaatt gctggaagag cagcggatcg cccaacgtac gcagtttgat
     7321 attgagatga tgaacgagct gggctactgt tcgggcattg aaaactactc acgctatctc
     7381 tcgggcagaa aagagggcga agcccctccg accctgtttg attatatgcc ggcggacggt
     7441 attttggtga ttgatgaaag ccacgttact gtgccacaaa ttggcggaat gtatcgaggc
     7501 gaccgagcga gaaaagaaac attggtgcaa tacggtttcc gtctgccgtc tgcactggat
     7561 aaccgcccgt tgagatttga agagtttgaa cgtctttcac cacagacgat ttacgtttct
     7621 gccacaccgg gggcgtatga attggagaaa aatcccgatg tggtggatca agtagttcgt
     7681 ccaaccggct tgctcgatcc gattatcgaa gttcgccccg ttgctacgca ggtggacgat
     7741 ttactgtctg aaattcacaa acgagtggcg gtggacgaac gggtgctggt gacaacactc
     7801 accaaaaaaa tggcggaaga tctcaccgat tatttggacg aacatggcgt acgagttcgt
     7861 tatctacata gcgacattga cacggtggaa cgggtcgaaa ttatccacga tttacgaatg
     7921 ggaatgtttg atgtgctggt ggggatcaac ttattgcgtg agggcttaga tatgcccgaa
     7981 gtgtcgctgg ttgccattct tgatgcggat aaagagggat ttttacgttc cgaacgctcg
     8041 ttaattcaga ccatcggacg tgccgcccga aacctcaacg gaaaagcgat tttatacggc
     8101 gaccgcatta ccaactcaat gcaaaaagca attactgaga ccgaacgccg ccgtgaaaag
     8161 cagatgaaat acaacgaaga acacggcatc acgccacaag cgttgaacaa aaaagtgggt
     8221 gaattgctcg acatcggaca atccgacaag ccaaaacggg gcaaacaagc ggtcaaaaaa
     8281 gccgaaaatt ctgcaaccga ctacaagccg aaatcccgta aagaactgga aaaagagctt
     8341 aaaacgctgg aacaacaaat gcgtgatttt gcgaaagatc tggaatttga aaaagcggct
     8401 gcggtaaggg ataagttgca gcatttaaag gcgtatttgt tggaggttta aatatgattt
     8461 ctcgttcatt attttcaaaa ttaatcttat ttgccaaaat tgttattttc tctcaacttg
     8521 tttttatggt ggttatctgg attgcccacc atattatgcg ggagtacagt aatccgtttg
     8581 aacgatttgg taccctgttc aataatgtgt ttttgacttt tattattccg atgatggtaa
     8641 gtagtgcggt tattgtttat aaaggttata cccagaaaaa tgaagataaa gtgttttgga
     8701 tttatatggg gttcttttta atttggattt tgggatttat ttattttgag ccggcagttt
     8761 atgataaatc actgaagatt tcaggtgcag gatttggggc tatgctctct attatcattt
     8821 gctcgaagtt attgcctaag gaaacaaata aagagcagct ctaagattct tgtgaagaaa
     8881 tctgttttct cggaggaaga aaatgctttt tgatagccat atccaccctg aggggttttc
     8941 agatcaagat gatgaccgga agtagccatt atgttgaatt attttgcaaa ttttagcact
     9001 aagtcgaccg cttgtttggt acgagcgagg aagctcgcac catcgggtaa acagatttgc
     9061 aaaaaagtta caaaatccga ccgcttactt gagcttattg attgcccaat ctaatcccga
     9121 atggaaatct tccgttaggc tcggtctgag ttgttccagt agttcaatta agccgttttt
     9181 atcggtgtga gtgaggttga tatgcccaac ttttctacca gctcggactt ctttgccata
     9241 ccaatgtagt tggctaaatg ggaggcttag ccactgcttg ttatgttcaa tgcctattaa
     9301 attaaccatc acgcttgggg caatttggtc gagtgctggc gtaggtagat ctaataatgc
     9361 ccgtaaatgt aactcaaatt ggctaatggc acagccgagt tgtgtccagt gtccgctgtt
     9421 atgcactcga ggggcaagct cgttgatgag tagcttgtcg cccacaacaa agcattccat
     9481 tgccattacg ccgacatact ctaatttttg cattaccgta gcgagcatct gttcggcttg
     9541 ctgctggtag agggcttggt tcggtaaatt cacatcggag acggagtaac gtagaatgcc
     9601 gttttgttgt aaattgtgag aaatagggta gaaacgggtt gagccgtcac ggaatctcgc
     9661 cccaacaatg gaaatttccc cctcaaacgg gataaatttt tcggcaatca cttcgccaaa
     9721 taattcaggt gtaatttgat gaatcgagtc ttgcgttaca atccattgcc cacgtccgtc
     9781 atatcctccg gttcggcgtt taaccactac tttttcgcca atatgctgaa aaatatcttg
     9841 ccaatgttcg gcattttcta gcagttgcca ttttgaagtc gcaagatgga gttcatcaag
     9901 tagtgatttt tgcgtaaaac gatcggctaa cttcccaaaa acattcaggt tcacaaaatt
     9961 cgggtggtta ccgagtaatt gcgttaaagg cgtatctgcc caacgttcga tttctgcggt
    10021 aataatgctg tttggctcaa tatcaaacac aggggcatcg aaagccagcg gtttgacttc
    10081 aatatcaagt ggtgctccgg cgtagcgtag cattctcccg agctggccgt tgcctaatac
    10141 atacacaggt gggtagattg cacttttttg catcgtggta ttctcaatgg gttagaaata
    10201 gtctgatagt ggtttgtcta aggtttggct gagtaagacc ataagtttaa tgcgagcttt
    10261 ttgcccactt aagcctttgg taaaaataat gcctttttgc tttaactgtt ttccaccgcc
    10321 tacataatca tagacatctt gggtaatacc attgaatgcc cgagaaacaa ttacaattgg
    10381 aatattggca ttcactaaag cctcaatacc agccagacaa ctagggggta aattacctgc
    10441 acccaatgcc tcaatcacaa caccatcgca tttgcttttc gctaattgtt ccagcagaaa
    10501 actatccatt ccggcgtatg ctttcagtag ttgcacgtta gctttagtta cttgttgaat
    10561 tggataacgt tcgtaagtgg tcaatttttg gaaaaaaatg acagattctt tcgttactaa
    10621 gccacaaggc ccaaaggttg gggtttggaa agtcgccaca ttagtggtgt gggttttggt
    10681 cacaaattta gcattgtgga tttcatcatt catcaccact aacacgcctt tatctcggct
    10741 ttcttcattt aacgccacta aaatcgcact ttgtagattg attaagccat cagcacccag
    10801 ttcgttactg gaacgcattg ctccggtaat tactaccggt atatttacgc tgagggctaa
    10861 atccagaaaa taggaggttt cttccaaggt atctgtgccg tgggtgatta ctacgccatc
    10921 gacattctcc tcattcactg ccttttcaat ccgcattttt aactgttgcc aatgctcgat
    10981 attgatatgc ggagagggaa tattaaataa cgattcttgc gccaattttg ctgggtggtt
    11041 taaacgttct aaggcagcca agagaggatt ttcattggaa ggggagacct taccgtcttc
    11101 cccttctttc attgaaatag taccaccagt gtggaggatt aataattttt tagacatctt
    11161 ttatacaata gttattcaac acgaggatca ggattatcta ataccatctg agtttgggtt
    11221 tgacggaaaa tacgcagttt ctctgcaata tcagggttaa aggctgctaa aatttgagcg
    11281 gctaataagc ctgcatttgc tgcacctgcc ggcccgattg cgagcgtacc gaccggaata
    11341 cctttcggca tttgcacaat cgaatagagg ctatctacac cacttaacat tgagcttttt
    11401 accggcacac ctaacaccgg cacaatggtt ttagcagcga tcattccggg caagtgagct
    11461 gcaccgccgg ctccggcaat aatcacttta tagccgttag tctctgcagt ttcagcaaaa
    11521 gaaaagagtt tgtccggtgt gcggtgtgct gagacgactt caacgtgata gctcaaaccg
    11581 aactggtcta atatttgggt tgcttcagac attgtagccc aatcactctt agatcccatt
    11641 acgatcgcaa tttcagcttt atttggcatt ttaaatcctt atgatactaa tgtaaaacag
    11701 tgtaatcata gcatacaaag caaacgtttg cgtagctatt taagaagtga aaagcaattt
    11761 ttagggctgt tatctgctgg ttaaaatatg atataatcga caaccatttt attttttata
    11821 aatttaatca tcggagatat aaatgacgag tagtataaac aaacgttcgg taatgactct
    11881 tttttcggat aaaaatgata tttacagcca ccaagtgcgt attgtgttag cagaaaaagg
    11941 ggtgccttat gaaatagaga acgttatgct aggcagtatt tctgaagatt tattagaatt
    12001 gaatccttac ggtaatattc ctacattggt tgatcgtgaa ttagtgctgt ttaaccctcg
    12061 tattattatg gaatatttag atgagcgttt ccctcaccca ccattaatgc cggtttaccc
    12121 tgtttctcgt ggtcagtgcc gtttaaatat gtatcgtatt gaacaagatt ggtattcgca
    12181 aattgatatt gtgaataaag atcctgaatc agcggaaggc aagaaagcgt tagcacagct
    12241 taaagaagat gtattggcat tagcgcctat ttttgccgct aaaccttatt ttatgagcga
    12301 tgatttcagc ttggttgatt gctatattgc accgttatta tggcgtatgc aaatcttagg
    12361 cgttaaattc agcggtgcaa cggcaaaacc aattaatgcg tatatgaccc gtgtattcca
    12421 acgtgatagt tttatccagt ctgttggcgg cgaagcgcca aaacatttaa tggacgataa
    12481 agactaatga aaccattaag accttatctt tataatgcct actataactg gattattgat
    12541 agcgataaca cgccttactt attagtgaat gcagaatttc cagacgtaga tgtgccggta
    12601 gagtttgtca aagaagggaa gattatttta aatatttcgc ctcgttccat cgggcagtat
    12661 attgtggctg atgaatacat tagctttagc gctcgttttc agggaatgtt aagagatatt
    12721 tatattcctt ttggggcaat ggtggcgatt tatgcgcaag aaaccggtga tggtattatg
    12781 ttccaagaag aagcctacta cactgaagag gcttatcaag ctcgagttag agcagtagag
    12841 cagcctaaaa aaatcaaggc gaagaaaaca tctaccttaa agttggtgaa ataagagatc
    12901 tatttcatca aaacacatta caagcggtta aatttttctg attatttgca aatatcagtc
    12961 aaaatttaac cgcttgtttg ttttgtgacg gaaataatca aattccactt gcactccgac
    13021 taaaaattgc ttatctttgt tttgtgtttg tactgttgtg atagtacagt aatgatctta
    13081 aggagagaaa atgaaattcc ataaaacctt attagtgact ttgttaagtt cactttctgt
    13141 agcggcatta gctcaagata aaattcaaaa tgtagcaatt acagcgattg tggaacaccc
    13201 tgcattagat tcaattcgta aaggtgtgat tgaagaatta gcccgagaag ggtttgttga
    13261 tggtaaaaac attaaaatcg actatcagtc tgcacagggt agtactgcaa cagcagcaca
    13321 aattgcgcgt aaatttgttg gggataaagc agatattatt atcccgatca ccacaccttc
    13381 ggcacaacct gttgttgctg caacacgttc tatcccaatt gtgttttcag gcgtgacaga
    13441 cccggttgct gcaaaattag taaaatcgtg ggagccaagt ggcactaacg tgacggggat
    13501 ttcagaccac aaagcgatgg ctccacaagt gaaattaatt caaacattag taccggattt
    13561 gaaagctgtt ggttatgtgt atagtgcagg tgaagttaat tctgcgattg tgttagaaga
    13621 gttaaaacaa gaggctcaaa aacagggctt tactatagtg ccggttgctg ttcaacgcag
    13681 tgccgatatt ggcactgctg ctcgcagcct aaacggaaaa gtgcaggcta tttatatttc
    13741 tgaagataat gcagttgttt cggcttatga agccttacat aaagcggctt tagaagcaaa
    13801 aattccggtg attgctgctg accgtgatac agtacaacgt ggtgcagtgg cagcttatgc
    13861 ggttaatcaa tatgatattg gtgtggcaac cggtaaagtt gctgctcgtg tattaaaagg
    13921 ggaaaaagca ggtacaattc caatccaaga agtcagcaaa ttagagcttt caattaatac
    13981 taaaacggca aaagaattgg gcattactat accagaggta ttaatcaaag aagctaaaca
    14041 aactttttag tgtaaaaaat aaaaatttgt tttatttgtc ataatcttgt agagtaaaaa
    14101 ttcatttcaa ctcagctaag gagaatatta tgggatggat tgctgcaatt attgttggcg
    14161 ctataattgg ttggatagct tcggctgtaa tgaaaagtga aggcggactt tgcaaaaata
    14221 ttattattgg tattttgggt tcgtcacttg gacgctgggt atttggtgat gtattaggta
    14281 ttggttccgc ttatagtgcc ggagacttta atatagtcgg tatctttttt ggtgtattag
    14341 gggcagctct tttgattttc attttgagaa aattaagcat aattaactaa tttcgtattt
    14401 cagaaaggaa gcagttgttt tataactgct tcttttttgt taaatatact ctttttgctc
    14461 ttgcatcagt tgtgtgaaaa aatcaattag gattcgcact ttaggagaga gataacgacg
    14521 gtttggatag agtaagctga tttgtaaagg ttcctgtgtc aaaaaaggca taataggaat
    14581 caactctccg ttttttagct cgtgttttat taaaaacttt ggaatgttaa tgatgcccaa
    14641 accagctttt gccatttgta ctaacgcata accattgtta ctgtaaattt taccttgtgg
    14701 tttaatttgc attttttgtc cttgttgaga aaattgccat tgaggatggt attcatagag
    14761 taggcagtct cgttccacta atgcttctaa gcctttaggt tcgccaaatc gagctaaata
    14821 atctggagaa gcaactaaaa ccaaatggga atctgcaatt tttttcgcta caatggaact
    14881 atctgcaagg ctaccaatac gcagcaccaa atcaaagcct tctgcaatca catctacccg
    14941 acggtcacta aattcaatat gaagggctaa attagggtaa tcttccataa atttcccaag
    15001 gtaaggggca atgaagcgag agccaaaatc cattggtaca gacattgtta ttttcccttg
    15061 tagcgttgag ttaatattac ttacgctggc atcggcctct tttagttcat ttaaaatagg
    15121 caagcattgc tgatagtaga gcaaccctgc ctcagttggc gtaatttttc gagtggttcg
    15181 ttgtagtaaa cgcacattga gatgttcttc taactgagcc accaatttac ttgccatggg
    15241 taacgaaatt tgagcttgtt gtgctgcttg agtgaaactt tgggtttcaa ttactttaca
    15301 aaataaactg attgcgttta gtttatccat tttctctctt ctttatattg taatttgtgt
    15361 taaggcttgc tatcgtaaaa atagtgtcta aaaaaatcaa cttaaaaaga aataatttca
    15421 aacaatttaa aataattatt aaaaattagg taataaatta tgggaaaatc actagttatt
    15481 gtggagtctc cggctaaggc aaaaaaaatt aaccaatatc ttggtagtaa ttatgtggtg
    15541 aaatcgagtg tggggcatat tcgtgattta ccgaaaagtg gtagtgatga aaaaacggaa
    15601 aaagcgaaac cgatttcaac caaagggctg accgctgccg aaaaagctaa aatcaaagca
    15661 gaaaaagagc gtgttgcatt ggttaaacgt atgggtatcg acccctataa tggctggaaa
    15721 gctaactatc agattttgcc ggataaagag aaagtggttt ccgagctaaa atcgttggca
    15781 aagaaagcag atcatatcta tctggcaacc gacttggata gagaagggga ggcgattgcg
    15841 tggcatttgc gtgaaatcat tggtggtgat gacagccgtt ttagccgagt ggtatttaat
    15901 gaaatcacca aagatgcgat caaaaaggct tttgacgatc cgcaaccgct caatattgac
    15961 cgtgtaaatt cccagcaaac ccgccgcttt ttagaccgtg tagtgggctt tatggtgtcg
    16021 ccattattat ggaaaaaagt agctcgtggt ttatcggcag ggcgtgtgca atcggttgcc
    16081 gtaaaattac tggttgagcg tgagcgtgaa atcaaggcgt tccaaagcga ggagttttgg
    16141 actattcttg ccaatacgca aattaatcgt aaaaaattac cgcttgaatt aactacttat
    16201 aaaggtaaaa aattctcggc aagcaatgag gctgaagcaa atgttgcagt gcgtgctttg
    16261 gagcagagcg attttattgt ttctaatatt gaagccaaag aaaccagctc tcgagctgct
    16321 gcaccattta ttacctcatc gttacaacgt gccgctagca ctcgtttagg ttttggggtt
    16381 aaaaagacga tgatgttagc ccaacggtta tatgaagcgg gttacatcac ctatatgcgt
    16441 actgattcaa ccaaccttag ccgtgaagca ttagcaatgg ctcgaggtta tattcaggat
    16501 aatttcgggg cgaattattt gccggaaaaa gcaaatgtgt atcgcagtaa agataatgcc
    16561 caagaagctc acgaagccat tcgcccgtcg gatgtgaatg tcaaaatggc ggatttaaaa
    16621 ggaatggata aagatgccga gcgtttatac gatttaattt ggcgtcgttt cttggcgtgt
    16681 caaatgttgc ctgctcgtta tgattctacc gcagtcacag tgtctgccgg agactatgaa
    16741 ctcaaagcaa acgggcgtgt actgcgtttt gacggctgga cgaaagtact gccggtgcaa
    16801 ggcaaaaatc cggaagatca ggaattaccg gcggttgaac tgcatcaaaa attaacgctt
    16861 gatgaaattg tgccaagtca gcattttact aaaccgcctg cacgttttaa tgaggcgtct
    16921 ttggttgctg agttagaaga gcgaaaaatt ggccgccctt caacctatgc ttcaattatt
    16981 tcgacgattc aagaacgtgg ctatgttcgc accgaaaaca agcgttttta tgtggaaaaa
    17041 atcggtgaag tagtgacgga tcgcctcaac gaatcattca aagatttaat gaattatgat
    17101 ttcactgcca atatggaaga ggtgctcgac caaattgcag aggggtctaa aaattggaaa
    17161 gaagagttga atactttctt taaacatttc tctgaagagt tgagccaagc agaattagat
    17221 gaacttgaag gcggaatgaa accaaacagc cttgtgccaa ccgatattga ttgcccgact
    17281 tgtggacgaa aaatggcaat tcgcaccgct tccacagggg tatttttagg ttgcaccggc
    17341 tatgctttac cgccaaaaga gcgttgcaaa acgacaatga atttaattcc agaggcggaa
    17401 tttttcaatg tgttagattc ggattctgaa accaaagccc taatggctcg caagcgttgc
    17461 ccgaaatgcg attcggcaat ggatagttat gtgattgatg ctgaacgtaa attacacgtt
    17521 tgtggtaata atccaaattg tgatggtcat attattgagc aaggttcctt caaaattaaa
    17581 ggctatgacg gacctgtagt ggaatgcgat aaatgcggtt cagatatgca cttaaaactg
    17641 ggtcgtttcg gcaaatatat gggctgcaca agctgcgata acacccgtaa aattctgaaa
    17701 aacggggaag ttgctccgcc aaaagaagat cctattgctt ttcctgaatt aaaatgtgaa
    17761 aaagccgatg cctattttgt attaagagac ggagcaagtg gggtgtttat gtcagctcat
    17821 aacttcccga aagtgcgtga aagccgtgca ccaaaagtgg tagagttagc tcaatatcgt
    17881 gaacgtttgc cggagaaatt gcagtatctt gccgatgctc cgcagcaaga tccggaagga
    17941 aacgaggcaa ttatccgttt tagtcgtaaa gagaaacgcc aatatgtgac ttctgagaaa
    18001 aacggcaaag ccaccaaatg gattgttgat tatctagacg gtaaatgggt tgagcgtaag
    18061 aaataaagct taaaagacaa gcggtaaaat tttctaaaaa ttttaccgct tgcttttaga
    18121 tgttctgagc gagtagttca tcaattgctt tacttaattt attgcgatcg tgtcggtaat
    18181 aaacgtcatt cgcagataag ttttttcgca agatttgaat atgttcggga agttcagaac
    18241 cggcatcatc agtcgtaatt accgcattaa ttctagcctg tccgatacag ttctccatcc
    18301 attcaattcg ctgattaagt gatagttgcc cagctgggcc atgttcttgt ccgatattgt
    18361 caataaatac tactcgggct ttgctttgag caatagagtt tgctatgcct gccaccagca
    18421 aattcggcat aatactggta aaaaagctac ctgggcctag cagtattaac tcagcacttt
    18481 gaatagctga aatggcttct ggtgtagcaa caaccatagt atctaacgct aaatgttgtg
    18541 gtgtttctgc taaagaatca atttgcactt caccaaatac tgattcgcct gaatgcaact
    18601 gtgcaattaa atgcaccggt atttcagaca ttgggataag ttgcgatctt acgtgcaata
    18661 attctcgcac caaattaatc ccttctagcg gtcggatttg catattttca agggcggtga
    18721 gaattaaatt gcctagatta tgtccagcga gttcgcctgt gccagcaaaa cgatactcaa
    18781 acaaccgaga agctatcgtt ggtttaacga taatttgatt taaacagttg cgtaaatctc
    18841 cccaagcaat caccccttgt tgtgaacgta ttctaccggt tgagcctcca ttatcggtag
    18901 tggcaacaat gccggtaagc cgttccttta aaaaagagag cgcggagagc aatcgaccta
    18961 agccgtggcc cccacctagt gcaacaactg cattgagttg gtttaaatag tgatgtcggg
    19021 taggtttaaa aggaataata tctgtatttt ccatcttggg atttcgttta tttttctaaa
    19081 ataatggcat ctgactgggc tgaaggcaat gcttgtaata cagctttaac caaagtcgct
    19141 aaaggaatcg caaaaaacac tccccaaaag ccccataaac caccaaagat gagtacggca
    19201 ataataattg tcagagggtg tagatttact gcttcagaaa ataaaaaggg tacgagtaaa
    19261 tttccgtcta gcaactgact aataataaat gcgagcatta aatagtagaa atccggcgat
    19321 aacccgaact ggaatagagc aattaacatt accggaatgc tgactaaaac cgcaccgatg
    19381 tagggaacta acactgaaat ccctaccgct acagaaagta gtaacggata gcgtaaatca
    19441 aaaaagagga aaataatata agtgacaacc ccaacaatta gaatttctaa aaatttacct
    19501 cgaatatagt tggcaatttg ttgttgcatt tcaaaccata ctcgtgttgc aagtcgacgg
    19561 ttttgcggta atactttact aaaagaacgc attaaaacga ttttatcttt cagtaagaaa
    19621 aagaccatga gtgggactaa gaaggtgtaa atgcctaagc caactaagct gatgatagag
    19681 ttaatcgaga gtgttagaag tgattctccc atactcaaaa tattactttt agcggtattc
    19741 acaatggaat ctagggtcgc ataatctact aattcagggt aatgctccgg tagggcttgt
    19801 aaccaagcat tgagcagatt aaacatcgaa ggtaaatctt gaataaaggt aactgcttga
    19861 ttccaaaggc tgggtagtag tactacgcct aaaaaagata ataaagcgat gaaacctcct
    19921 agtactagaa tgacactcaa agttcgaggt aatttgagtt tgctcgacaa aaaacggatt
    19981 ggccattcca ataaataggc aaacacaagt gcaaccagaa ggggcataag cagatcgcta
    20041 aaaaaataga taataccgaa accgatcaat agaatactaa acagcacaac tatttgcggg
    20101 tcggtaaatt tttttcgata ccaatcttgc aacatttgaa acatatggat tgcctttaaa
    20161 ttatgcgatg aaaattattt ctggctacag actgcaatga accctagctt tttgtccggg
    20221 tcattaaata gtttgtacat tttattaaag gtttcgcgat tttctggttt taatgcattg
    20281 ccgataattt tcatggcgcc taaaacacct tcatcatgaa tcagaccttt aggggaaagt
    20341 agagacattt ctccggaaaa ggtatcaaca ttacggaaac cacaacgttg gaataatgat
    20401 ttccagtctg ctttagcaag tggagagaca gtgatattga ttgcatcacg caactcggct
    20461 aataaagtat cggagtcttt atcttggata acaatatcgt gcgttaataa aaagccattt
    20521 ggttttaata cacgaaaata ttcacgtatt gccttttctt tcgcttctag aggaagcatt
    20581 gtcagcatgg cttcattaat tacaatatca aaactttcgt cgtcaaatgg cagttttgtt
    20641 gcgttggcgc gctgtacttg aattaaatgc tcaacatggt tttctttgat atttttacgt
    20701 gctttttcaa gcgcatcttc gtctaaatca ataccaacaa tttggcattc aaattgttga
    20761 gctaattgga ttgcagtagt ccccatgtta caggcaactt cgagcacttt tttattttta
    20821 tcaaaatccc cgtttgcaat taaccaatca gttgctaatt tccccccggg gcgtaaacga
    20881 gttttgccta aacgagctaa aaaatgatga ccaacttctt cttttttcat aaaaacctct
    20941 ggatttgcaa aatacgttaa atatatgacc gcttgtattg tgatctatgt tcgttattat
    21001 actcaatttt ttcattttct tatatacaac atcaacagat tttgccagaa tacaacctca
    21061 ttttgatatg aggaaaatag aatgagtaag caaaagaatg attacctcca ccagcgaggt
    21121 caaattaaag aaagtgcagt aaaagcatta gtgactgatc cactttttag acaacgtgta
    21181 gaaagaaatc gtaaagggaa agggagctat cgcagacaag aaaaacacaa aaaaactatc
    21241 tatgggcaaa aagaaacccc atttaaaaat attcggttag agtcttttta aatggggttt
    21301 tatttgtagc ttattgtagt tttataagcc tgataaacac tatggtttac tgaaataggc
    21361 caacaacggt tctggatttt gaatataaga agaaagttct ttatgctctg ggtgacccat
    21421 atagggaatt tgcccaagta aaggcgcatt aattttttgt gtcagtagtt caattaattc
    21481 gtgataatgc cgtagccctg gatttactct gtttgcgacc caacttacta attttacacc
    21541 acgctgcaaa atttcattcg cagtaagtag tgcatggtta acacaacctt ccttaattcc
    21601 caccactaaa acaaccggca tattgttttg cattacccaa tcagcaaaat agtaatcctt
    21661 gttaatagga gttagccagc cataggttcc ttctacgaca acatttggat aggcattttc
    21721 tagtcgtttt aaatctgtgt ttaatttttc cagttgaata tgatgaactg catctaaagc
    21781 tgcaaataca ggggtactgg aatgaataaa agtatagcta ttaatatcac gatagctaac
    21841 attagttgga cagctatcta gtatggttaa tacgtctgaa ttatcttcag tagcataatc
    21901 atattgagta ggttctgtgg gtaatgaatc atcaccgcca caagcaatgg gtttatagcc
    21961 aattacagga aaactatgtt ttgtaagtgt ctgtatgatg gctcgggtaa ccacagtttt
    22021 ccctacgttg gtgtctgttc cggtaataaa taatgagggc ataaatggct cctttcgaaa
    22081 atatggctgg tagtttaacc aaaaatagat caatttattc tgtctttgat caaatttccg
    22141 tcataaattc cttgttttat tgctgaacag gcaattaatg gactattcca atcgtattgg
    22201 ctggtaacta aatcgatttt taggtttgtt tgtaacaaat ttttatgcaa tttttctgaa
    22261 atttgcgtaa ataacggctc ttttattttg atcaatggcg agtttagcat aattttttca
    22321 ctagaaaata tattaactaa attcattaat gcataagcta aattatcggt aatatgcgat
    22381 aaaatagcta atgcaagcgg ttgattttca tcaatttttt gacaaagcca gctgattttc
    22441 tgttcctgac tttttaaatt attaggcaaa taacgatcaa tgagtctcac aatagctggg
    22501 aacgtcacct gattgactaa tttatagcga tgaatttcat ctagttcagg gaatatttca
    22561 tcactgagat ggctaaatct aggcataagc atattatcaa cattcatctt tgattgttta
    22621 gacagtaaac taccactaag caatacactt agattcacag tatcatctaa ttgtagaaaa
    22681 atagcattat cttggttaat taatgagcca accgtagatt ctgcaagcaa ccacagctga
    22741 aaatgttcac ttaataaaat aggacaatga aacagcggcg agagtttaga tgtaatgtta
    22801 cagaatatat ttttgtttcc caattgagta atactgtctt tttctgcatt aattttaccg
    22861 atcacactaa tagatacagc caggagctga ctagtattaa cacaatatag ttggcggaaa
    22921 tttgtaataa agttaagaat aaaatcattt agcctaggat aattttctgc tgagattgta
    22981 taatcttgct tataaatttc tgcaccattg agtttacaaa gtgaaatttc aattttatga
    23041 gatgaaacag taacacaaag tagttgccaa aaaaaattag aaacagctaa tccaacggag
    23101 gggcgacctc tggataaagt agtctgaacc gtacgttcta aaatgaagtg gttatctatt
    23161 agtattttag tcagatttgt tactgaagct ggggctaacc ccgatagttt agctaaatct
    23221 gttcttgaaa tgagttcaaa ttgctcaatt aaatggtata ttttacccaa atgaagggct
    23281 ttgttgtcag aaaacattta aaatccttat gttagaattt ttagatgaca attatttttt
    23341 gatatgaaaa aaataacaat ctttttttgt ttataatgag agacagatca cataattatt
    23401 ttttacgttt aaatatttca ggaaaagtat atggagtctt tgattcacta ccaatgggtt
    23461 gaaacaaatg agcaattaga ggccgtatgt gaacaggcca gaaaaacaaa agtagttgcc
    23521 ttagatacag agtttatccg tacacgtacc tattatccga tattgggttt aattcaactc
    23581 tttgatggcc aacaggttag ccttattgat ccaaatacga tttctgactt ctcgcctttt
    23641 gtgtcattat tagccgataa aaatatcata aaagtattac atgcctgtag tgaggattta
    23701 gaagtttttg agtatcaatt taagcaattg ccagagccga tgttggatac tcaggtgatg
    23761 gcagcctttg ccggcattgg tatttcgatg gggtttgcaa aattggtttc ccactactta
    23821 aatattgaac tagacaaagg cgcttcccga accgattggc ttgccagacc gctaagcgct
    23881 gaacaattac aatatgcggc agctgatgtt tggtatttat tgccagttta tgagaaattg
    23941 gcacaagcat taacaaaaag cacttggcaa agtgctgtag cagaggagtg tgtcgctttg
    24001 ttgaagaaag cgaaacagcc tatcaataag gaaaaagcct ataaaaatat tgccaatgct
    24061 tggcgattga atcgggaaga gttagccata ttacaagtat tagcgaaatg gcggattgaa
    24121 gaagcacaaa agcgcaatct tgccttaaat tttgtcgtga aggaggcaag tttagttcaa
    24181 atcgcaaaaa gctgtcctaa acacacttct tcgctgttag aatttatgca cccaaatgaa
    24241 gtcagaattc acggaaaaaa aatactatgg ttggttgagc aaggaaaagc aatagaatcg
    24301 aatgattatc ctgaactcat tcagcgcttg gtggatgaaa agggttataa atattatatg
    24361 caagcgatgt tgcaaaaatt attagaaatt caaccgcttg atatcgtacc ggagttggtt
    24421 gcaagtaaac gtcaattaaa tcagctattt aaatggtata ttgatggaaa accatcagaa
    24481 aaaattcctg aattattaat cggttggcga aaaccttttg gtgaacagct gctatcggtt
    24541 ttatcttaaa tttcattcgg gttacataga ctatgtacag tataattgcc taaaaaggag
    24601 tttatatgga aaataaaaaa ccaccaaaag cattagatgc gattgattta aaaatcttaa
    24661 acgagctaca acgtaacggg aaaatttcta atattgaatt atcaaagcga gttgggcttt
    24721 ctccaacgcc ctgcttagaa cgggtaaaac ggctagaaaa aaataacgta attatgggct
    24781 ataaagcttt acttaaccct gaattacttg atgccccttt actggtgatt gttgaaatta
    24841 ctttggtgcg tggtaagcct gatgtatttg aagaatttaa taaagcgatt caacaacttg
    24901 atgaaattca agaatgccac ctggtatcgg gggattttga ttatctgtta aaaacccgtg
    24961 tggcggatat ggtatcgtac cgtaagttat taggcacaac attgcttcgt ttgcccggcg
    25021 taaatgacac tcgaacctat gtggtgatgg aagaagtaaa acaaaccaac tatttgttgt
    25081 taaagtaagg agaattgggt gattgaacaa cttaaaccac acctaaaagg caaagagaac
    25141 ttgatcaaac ttatgctttt gttgaccggc tttttgggcg tttatttgct aattgcttgg
    25201 gcaagttata gtccattaga taatgcttgg tctgttgcaa gcagcattac acaaacaacc
    25261 ttgaataaaa caggtcactt tggtgcttgg agtattgata tgctctatgc aatgtttggt
    25321 aaggttgcag ttttagtacc tattgcatta attattttct caatttatag cttgggaatg
    25381 ggtttaagtg tcgatatgaa atggaaaact gtcttcattc gcctagccag tttcttatta
    25441 ttgatggtcg gtcttgccgg gttatttagc gtgctttttt caaactcagc ttattatctg
    25501 tcgggtggct ttgtcggtgg agtttgggag acaatattat ctgatactat cggacaattt
    25561 ggtgccttat tgattgcaat gctttttact atagctggct tatatttttg ctctgttcaa
    25621 tcattattgc caatattaac gcaattttat gagtggataa tggcaaaatc agaagagagc
    25681 aaaacagctg aatctcttca gcatttgcaa aatactgagc aaaaacaacc gcttgtaact
    25741 gaaaatgaag cggtggaagt tgtagatgac cataaaccgc aatttaccga tatctccgcc
    25801 tttaaacgcc caaacattag tggtttaaga cactcggaaa atgtagagat agataaccga
    25861 gaaatgtatg aaattgaaag agatcttgag ctaccgacta ttaatatttt aatacagcct
    25921 gatatggtta accaagttgc ggaacaagct acatcgggct atgagttacc aaacgaagaa
    25981 tccaatgtat tgcaaatgcc gaccattcgc ttaaataccg ctatcgaaaa cgaggtggat
    26041 acaatcgaaa acagttcatc attggaagac ctgaaaatag cagaatctat gttacctcaa
    26101 attcagcttg ataatgatat tgaagatact gaagaagcta ttgacgatgt gcgtgaaatt
    26161 acaccggaat ttatggtaac gccgcccaag gcgatgaaag atgtgtctga gcagccagcc
    26221 tatccaaaag gctatggtga tacgttaatt cacccgttgt tacaacgaaa agtgataacc
    26281 gaaaaaccga caacaccatt gccaacgcta gatttgttgg ataaagcacc gattcaaagc
    26341 cagcaaatta ccgaacagga aatacgagaa acctctgtgc ggctagaagc agaattagca
    26401 aactttggcg taaaagctac cgttgaagat gtattggtcg gtccggtagt gacccgttat
    26461 gaaatccaac cggctgccgg ggtaaaagcc tccaaaatta ccaatttagc gagcgatata
    26521 gctcgtggct taatgtttaa agcgattagg attactgaag ttatcccaaa caaaccttat
    26581 atgggtattg aaactccgaa taaacaccgt gaaacagtgt ggttgcgtga tgtgctagac
    26641 agcgatgaat tccgcaatac cactgcaaca ttgccaatgg cactaggtaa agacatcagt
    26701 ggtgagcctg tggtggtcga tatggcgaaa atgccacact tactggtggc agggcagacc
    26761 ggtgggggta aatcggttgg ggtgaatacg atgattttaa gtctattgtt caaacttaca
    26821 ccagaacaag tccgctttat tatgattgac cctaaagtgg tggagctttc catttataac
    26881 gatattcctc acttattaac gccggtagta accgatatga aaaaagccgc caacgcacta
    26941 cgctgggcgg tggaggaaat ggaacgccgt tatttgctgg taagccattt acaggtgcgt
    27001 aatattgaag gctataatgc gaaaatcgac caagcggcag cgatgaattt gccgattcca
    27061 gatccaacgt ggcgaccggg cgattcaatg gatagccttc cgcctccgct acaaaaatta
    27121 agctatattg tgctgattgt cgatgagttt gcggatttaa tgatgtctgc cggtaaagaa
    27181 gtggaagagt acattatgcg aattgctcaa aaagcccgag cggtgggaat tcacttaatt
    27241 cttgctaccc aacgtccgtc aaccgatgtg attaccggcg tgattaaagc caatattcca
    27301 agccggattg cgtttacagt agcgagccaa attgactcaa gaactatttt agattcaggt
    27361 ggagcagagg cattattagg gcgaggcgat atgctctatt caggagctgg cagcccggat
    27421 attattcgga tacacggtgc gtttatgaaa gacgaagaag tgcaacgcgt ggcggataat
    27481 tggcgggcaa gaggaaaacc aaactacttg gaaagcattg tggaatcccg ctcggaagag
    27541 gctgatggca aaaacgatgg cggaacgggc gatttagatc cgctatttga cgaggttgtt
    27601 gaatatatca cggaaaccgg ttcggtctct atcagtaata ttcaacgccg cttctcgctt
    27661 ggttttaacc gtgcggctag aattgtggat caaatggaag ctcaaggcat tgtttctgag
    27721 ccacttaaag gtggcaaacg agaagtgctg gcgaggtaaa acacatacaa gcggttagat
    27781 ttctgtgaaa ttttgcaaat tttgacaaaa atctaaccga ttgtatttat ctaatgctaa
    27841 ataagcatag tataaggcta gtctttgggc taaaattaac gcaattttta catcttttaa
    27901 ggttgaatat atgcgattag atgatattaa agaaagtaaa aatgttgaag acagaagatt
    27961 caacaatgtg ggtagaacta aggttggtag agggaaaggt ggaatattaa cctttattat
    28021 cgtgcttgtt ggagcttatt atggtgttga cttaacaggt ttaatgggcg gtggcgtaga
    28081 atatgaggag cagacatcag cattaaatga aagtgaagaa aaacagctaa gaaccttatc
    28141 cgctaaagta ttaacgacca cagaaaatat ttggacttcc tacttccagc aaaatggtct
    28201 aacttataaa gagccgtctt tggtgcttta ccgtggggca attcaaactg cctgtggcac
    28261 cggtcaatct gcaatgggtc ctttctattg ccctgtcgat caaaaggttt atttagattt
    28321 atcattctat gatgatatgc gtaaaaaatt aagagcatcg ggcgattttg ccttctctta
    28381 cgtgattgca cacgaggttg gccaccacgt ccaaaattta ttgggcataa caagcaaaac
    28441 ccaacgggct caaatgaaag cctcatctaa agccgaagca aaccaaattt cagtcaatgt
    28501 agaattgcaa gctgactgtt ttgccggcgt ttggggacac caactcgcaa aagccaaccg
    28561 attagaggaa ggcgatgtgg aagaagcctt taatgctgcc caagcagttg gagatgaccg
    28621 attacagcaa caaagtcgtg gctatgtcgt gccggatagc ttcacccacg gctcatctgc
    28681 acagcgtttg gcttggttta gaaaaggttt aaccacagga aatcctgcag tttgtaatac
    28741 atttaattaa aaa
//
LOCUS       DANLZD010000011        28647 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.011, whole genome shotgun sequence.
ACCESSION   DANLZD010000011 DANLZD010000000
VERSION     DANLZD010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 28647)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28647)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28647
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.011"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            25..999
                     /gene="znuA"
                     /locus_tag="PXE26_000339"
     CDS             25..999
                     /gene="znuA"
                     /locus_tag="PXE26_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     ZnuA"
                     /protein_id="HDL5592964.1"
                     /translation="MFKRTLIGLAVLGASVAQADVLTSIKPLGFIASAITEGVTETKV
                     LLPVTASPHDYSLKPSDVTQLQSAQLVVWVGDGLEGFLEKSIEKLPREKVLTLEDVDA
                     IDDIVDKASKKEDKDDDHDHKHEHKHEHKHEHKHEGHNHEGHNHDHHGHSHDEDWHIW
                     LSSEASELAAEQIAARLSEQMPEHKAKIAENLAKFKANLTAKKAEIAKQLEPVKAKGY
                     YTFHDAYGYFEREYGLNSLGSFTINPTVAPGAKTLTAIKKNIAKNKAQCLFAEPQFTP
                     KVIETLAKETKVNVGQLDPLGAKVQLSATAYPEFLQVLADEFSQCLTK"
     gene            complement(1051..1371)
                     /locus_tag="PXE26_000340"
     CDS             complement(1051..1371)
                     /locus_tag="PXE26_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnA domain-containing protein"
                     /protein_id="HDL5592965.1"
                     /translation="MIYPTCPECKSENTYHDSIQFVCPDCAYEWTGEETDQDDDVLIV
                     KDSNGNLLSDGDDVLLIKDLKLKGSSEVLKKGTKFKGIRLAQGDHNVDCGKIMLKSEF
                     LKKA"
     gene            1512..3875
                     /gene="rnr"
                     /locus_tag="PXE26_000341"
     CDS             1512..3875
                     /gene="rnr"
                     /locus_tag="PXE26_000341"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HDL5592966.1"
                     /translation="MIVDPNYQQELEKYENPVPSREFILNTIREHNAPMSRDELLSAF
                     HIDDEERMEGIRRRLRAMENDGELVFTKGKRYALPEKMDLIKGTVIGHRDGYGFLQVE
                     GHEKGATKSEDWFIPNAQMVKVMHGDFVLAQPNGTDRRGRKEVRIVRVLEARKKQIVG
                     RFFLESGIGFVVPDDSRVNQDILIPDEHRMGARMGQVVVVELQERKASFSRPVGIITE
                     ILGDNLAPGMEIEIALRNHDIPHIWPEGVEKQIRQFSSEEVPEEAKQGRVDLRDLPLI
                     TIDGEDARDFDDAVFAKKEGNGWRLWVAIADVSYYVRPKTALDLEALNRGNSVYFPNR
                     VVPMLPEVLSNGLCSLNPQVDRLCLVAEMSVSSKGELQDYQFYEAVMNSHARLTYTKV
                     WKMLEGDEALRERYAPLVPHIEELYAMFQTLMKARHKRGAIEFETIENQFIFNPQGRI
                     ERIEPLIRNDAHKLIEECMILANIAAARFVEKANEPALYRIHDKPSEEKLLSFKSFVR
                     ECGLTWDVGLDPTPKDYGVLLEQIAERADKELIQTMLLRSLKQAVYAADNIGHFGLAL
                     TEYAHFTSPIRRYPDLLLHRAIKYLIEKGKGNTRYYTDGGGYHYKLDDMDEFGDKCSA
                     TERRADEATREVADWLKCEFMQDHLGEEFDGVISSVTGFGLFVKLNELLIDGLVHIST
                     LDNDYYHYDADRQRLIGGSGIIYRLGDAVRVKVINVNLDEKKIDFELLTGNKKTGKTA
                     KKKAKATEVPVFKEPKTVKKAKKVAEKKPAKSAKKRTKTTASKSRKK"
     gene            3879..4145
                     /locus_tag="PXE26_000342"
     CDS             3879..4145
                     /locus_tag="PXE26_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5592967.1"
                     /translation="MDYKKQILFSLLFALVIAIISYFLFTYIPFDCSDLSKLNDSQRL
                     ECRTAEFLGVYYWLPHTTTLFFGSVLLYWAVYGMISLVQAVLKR"
     gene            4368..4826
                     /gene="mraZ"
                     /locus_tag="PXE26_000343"
     CDS             4368..4826
                     /gene="mraZ"
                     /locus_tag="PXE26_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HDL5592968.1"
                     /translation="MFRGASSISIDSKGRIAIPTRYRAELLEKHHGILVCTVDIRQPC
                     LLLYPLHEWEMVEQKLLALSNFDPVQRRIQRVMQGFATECEMDSAGRILLSPTLRQHA
                     QLEQQIMLVGQLNKFEIWQDKQWQAQIAEDLAFGSSAEILDCEALKNLSL"
     gene            4842..5780
                     /gene="rsmH"
                     /locus_tag="PXE26_000344"
     CDS             4842..5780
                     /gene="rsmH"
                     /locus_tag="PXE26_000344"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HDL5592969.1"
                     /translation="MSENPKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSK
                     LGENGRLIATDRDPRAIAEAQTISDPRFQIEHTAFSAIPELCERMGLVGKIDGILLDL
                     GVSSPQLDEAERGFSFMRDGPLDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERF
                     AKRIAQAVVSYNKSANEKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINGEL
                     DELEKALNSALTVLAPEGRLSIISFHSLEDRMVKQFVRKHSKGMDVPRGLPILEAELT
                     KNIPLKTIGKAIMPSEAEIEANARSRSAVLRIAEKR"
     gene            5799..6110
                     /gene="ftsL"
                     /locus_tag="PXE26_000345"
     CDS             5799..6110
                     /gene="ftsL"
                     /locus_tag="PXE26_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HDL5592970.1"
                     /translation="MSNERYPLHQIIIDDIFSHNKVALLLLIGVVISAVATIWITHQT
                     RLSVSEQGQLIQANQKLESQYTNLQLEENSRSSRARVDAAAKSFGLQPIKKEQEIILV
                     E"
     gene            6114..8174
                     /locus_tag="PXE26_000346"
     CDS             6114..8174
                     /locus_tag="PXE26_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsI"
                     /protein_id="HDL5592971.1"
                     /translation="MVKSVKLKRKQEAPVAKAEPQQAEGKKTPSFLPTRFRVVVFFML
                     LMVGGLLAQTAYIQLFDSERLIKEANNRSLRTKELQFTRGRILDRNGRFLSISVPMYS
                     LTLDPREYFDTKLRRSNESWRALAIEMETSKGKIEANVNKFIEKKNFSKEKVDFDPRS
                     ILNTKSEGYWTQLAQVTGLDYNSLIEKVRNNPSSVFLRLDNENLVRERQKFQALSKEI
                     GRSYNDIMDELYSKNRQRFLYLSRHQSEAISEYAKELDIDALVIKVESRRFYPLAEES
                     SQLIGFTDKDDMHGSEGLERSFDSLLIGKNGKQIIRKDAKGNIVENIRSEKQYDPQDV
                     MLSIDEELQSMVYGEIKKAVQENNAESGTAVLVDVQTGEILAMANAPSFNPNKRDSFK
                     PELMRNRAITDTFEPGSTVKPFTVLTALQNGVTYRDEVIGTRPFVVNRHTIKDVAPRD
                     SLTLTGILQKSSNIGVSKLALRMPANALVDTYTKVGFGKDTGLGLGEQRGTNGDRKRW
                     ADIERATLSYGYGLNVTPLQLARAYATLGSFGLYRPLSITKVDPPVIGERVLPEKTTR
                     DVVHMMESVAAKGEGGHRAAVDGYRVAIKTGTARKLEKGKYVEKYIAYTAGLAPASDP
                     RFALVVLINEPKAGNYYGGFVSAPLFSRIMGYTLKQRNIKPDNLTENTQSAVREIKLE
                     RPIN"
     gene            8183..9673
                     /gene="murE"
                     /locus_tag="PXE26_000347"
     CDS             8183..9673
                     /gene="murE"
                     /locus_tag="PXE26_000347"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HDL5592972.1"
                     /translation="MKRLLPFLTELDAWVEELTELKQMTLDSRQVQAGDLFVALKGHQ
                     VDGRKFIPNAIEQGAAIILAEADEDQPEIELDPKFAKFNLDRTACCKVVSVPRLPKLL
                     SEIAGALYHNPSHKLTLAGITGTNGKTTTAQLLAQWHNLLGGKSAVMGTIGNGLYGQV
                     QEAVNTTGSAIEIQHNLANFVELGADFCAMEVSSHGLAQFRAEALDFDLAIFTNLSRD
                     HLDYHNTMEEYAQAKFRLFNELSTKAQVINADDEIGREWLTQLPNAVAVSTDPKFAGN
                     HQFVKATAVKFTLQGASIAFESSWGNGELHSRLIGAFNVNNLLTAFAGLLALGFDIQE
                     LVKTAPNLVGVAGRMECITAPNKPMVIVDYAHTPDALEKALQAARLHCEGELWCIFGC
                     GGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKIMADIVKGFSKPQQIIHNREE
                     AIKTAIEQAKATDVILIAGKGHEDYQIIGTEKLHFSDQETARKYLF"
     gene            9761..11155
                     /gene="murF"
                     /locus_tag="PXE26_000348"
     CDS             9761..11155
                     /gene="murF"
                     /locus_tag="PXE26_000348"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HDL5592973.1"
                     /translation="MIKLTTQQIAEILNAKLIGNGETVVETTSTDTRQAVENGLFFAL
                     KGENFDAHHYLQNAVAQGCVAVVVERECEIDVPQLVVADTRLALGELAKWLKAKLNPK
                     TVAMTGSSGKTTVKEMTAKILQKMTACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYA
                     VIELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENG
                     KAIVNLAFYYPQWQKEIGSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQ
                     GEIAIDLPYLGKHNVSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHC
                     LFIDDTYNANVDSMKSAISVLENYPAYRIFAVGDMAELGEESSKCHQEVADFAKNAAL
                     DLIVSFGKESAVISQQAEHHFTDKQQMVDFLLPIILQKIEQKQPLVLLAKGSRSQKME
                     TVISELCKPFNLNF"
     gene            11176..12258
                     /gene="mraY"
                     /locus_tag="PXE26_000349"
     CDS             11176..12258
                     /gene="mraY"
                     /locus_tag="PXE26_000349"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HDL5592974.1"
                     /translation="MLVWLAELLVQYNTAFNVVSYITFRAIMALLTAMGIGLWIGPKV
                     IRRLQILKFGQEVRNDGPESHFKKRGTPTMGGVMILAAIGVSTLLWADLRNSYVWFTL
                     FVLFGYGAVGFVDDYRKISRKNTDGLIARWKYFWLSAIALVAVFGMYAVGKDTAATQL
                     VVPFFKDVMPQLGLFYIVLSYFVIVGTSNAVNLTDGLDGLAIVPTIMVASAFALIAWA
                     TGNFNFAQYLHIPFIPNAGELVILCTAIVGAGLGFLWYNTYPAQVFMGDVGSLSLGGA
                     LGVIAVLVRQELLLVVMGGVFVVEALSVILQVGSYKLRQKRIFRMAPIHHHFELKGWS
                     EPRVIVRFWIITLMLVLVGLVTLKLR"
     gene            12322..13623
                     /gene="murD"
                     /locus_tag="PXE26_000350"
     CDS             12322..13623
                     /gene="murD"
                     /locus_tag="PXE26_000350"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HDL5592975.1"
                     /translation="MQKQYENKTVTIIGLGTTGLSCVDFFKKKNANIQVIDTRANPAG
                     ADKLDVTIPLHTGGLNSEWLLKSDLIVISPGLAVATPEIQQAIQAGVEIVGDVELFCR
                     EAKAPIIAITGSNGKSTVTTLTTEMAKQAGIKVGMGGNIGVPVLSLLEGDYDLFVLEL
                     SSFQLETTYSLKAKAATVLNISEDHMDRYDSIADYRQAKLRIYDNAENIIVNGEDAQT
                     YPIQAVKKVIRFAEQNAEYSLRNQMLYSGDDAIIQTKQMLISGRHNEMNALAAMALAE
                     AANVPREGIVKALQIYGGLPHRFQAVATNDGVRWVNDSKATNVGSTVAALNGLNIAGT
                     LYLLLGGDGKAADFSELKPLINKPNIVCYCFGQDGAALAELSEQSVLVETMQQAIEAI
                     RPQLKKGDMVLLSPACASLDQFKNFEQRGEVFMALAQGQHA"
     gene            13623..14801
                     /gene="ftsW"
                     /locus_tag="PXE26_000351"
     CDS             13623..14801
                     /gene="ftsW"
                     /locus_tag="PXE26_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HDL5592976.1"
                     /translation="MLERIKSEWDKWVRLTPSNSLYDRTLIWLFLGLLIIGFVMVTSA
                     SLPVSTRLNNDPFYFAIRDGLYIIASIIFCYVFVQIPIEKWEKHNLALFFISIGFLIA
                     VLIFGRSINGAVRWIPLGILNFQPAELAKLAVICYFASFYVRKYDEIRKEKASFWRPA
                     VILFLFGFLLILQPDLGSTFVLFVLTFSMLFIVGAKIMQFMFLGVVGTVLFAVLILTS
                     EYRLKRVTSFMDPFADAYGDGFQLSNSQMAFGQGEFWGQGLGNSVQKLEYLPEAHTDF
                     VMAVIGEEFGFFGIACIVLLLILLTVRALKISKESLVLEERFKGYMAFGIAIWVFLQG
                     FVNLGVASGLLPTKGLTFPLVSYGGSSLVIMSIAIAVLLRIDHENRAERIGHAKIKTI
                     "
     gene            14920..15975
                     /gene="murG"
                     /locus_tag="PXE26_000352"
     CDS             14920..15975
                     /gene="murG"
                     /locus_tag="PXE26_000352"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HDL5592977.1"
                     /translation="MAKKLLVMAGGTGGHVFPAIAVARELQKQGWQIRWLGTKDRMEA
                     TLVPKHGIEIDFIEISGLRGKGVAALLKAPFAIFKAVMQARKIIKNYQPDAVLGMGGY
                     VSGPGGIAAKLCGVPVILHEQNAVAGLTNVWLSKIARKVLQAFPTAFKEAEVVGNPVR
                     EDLSALPLPNERFAKRGYPINILVMGGSQGARVINQTVPEVAKVLGNNVFISHQVGKG
                     NLAGIEEVYQQTGNGIASEFIDDMKAAYEWADLVICRSGALTVCEIAAVGLPAVFVPF
                     QHKDRQQFLNANYLAADGAAVIIEQSDFTPKALQQALEPLIANRQLLLDMSMRARAKS
                     TPMAAKRVAEVIIQEAN"
     gene            16051..17478
                     /gene="murC"
                     /locus_tag="PXE26_000353"
     CDS             16051..17478
                     /gene="murC"
                     /locus_tag="PXE26_000353"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013527829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HDL5592978.1"
                     /translation="MKNFQDKVKKLVPEMRRVSQIHFIGIGGAGMSGIAEVLLNEGYQ
                     ISGSDIADRAVTQRLSAAGAKVFIGHQAENIAGASVVVVSTAIDETNPEIIAAREARI
                     PVIRRAEMLAEIMRFRHGIAIAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSTGK
                     NAHLGASRYLIAEADESDASFLHLQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLR
                     NLPFYGLAVMCADDETVMEIAPRVGRQVITYGFSENADYRIEDYQQTGFQEHYTVVCP
                     SGERIDVLLNVPGMHNALNATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGSFI
                     RPNGKIMLVDDYGHHPTEVDVTIQAARSGWEGKRVVMIFQPHRYSRTRDLFDEFVQVL
                     SKVDALILLDVYAAGEAPIVGADSKALARSIRNLGKVDPILVSDTDQLGEVLDQIIQD
                     GDLILAQGAGSVSRISRGLAESWKN"
     gene            17568..18479
                     /locus_tag="PXE26_000354"
     CDS             17568..18479
                     /locus_tag="PXE26_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HDL5592979.1"
                     /translation="MSIKNEKIAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGID
                     TKEFPIEKLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFR
                     TKLLWNAVGLPTADMVVVQRGQAVDFDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEE
                     LAPAIHEALKFDSIVLVEEFLAGNEYSVPVLDGQVLPAVQVIPDGEFYDYHAKYVSDN
                     TQYVVPALNDERQAEVAKLVKAAYDVVGCRGWSRIDVMEDGEGKFRLVEVNTNPGMTS
                     HSIFPKSAATVGISFEKLVERVLELSA"
     gene            18479..19270
                     /locus_tag="PXE26_000355"
     CDS             18479..19270
                     /locus_tag="PXE26_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HDL5592980.1"
                     /translation="MGIFRKKNSTNVRLNVLNPKTPVSPRKWLVFIKPLIVLLCTLFV
                     FGVYSNWQNILESWDKTPIRAYALTHKTQFTTNADIRETLSKEPALKGYFGQNIQEVK
                     DKLLSIPWVKDVAVRKLYPDRLSITLLEHKPVAIWNDTNFVSEQGTVFSLPKDRIDKN
                     GLPLLYGPDTEGKSVLEAWNKIRADLNARNLDLTSVSVDNRGSWTIRLSNQVELRLGR
                     GEWTSKIDRFVTIFPEIHIPEGNRLAYVDLRYPHGAAVGFSPIKN"
     gene            19293..20564
                     /gene="ftsA"
                     /locus_tag="PXE26_000356"
     CDS             19293..20564
                     /gene="ftsA"
                     /locus_tag="PXE26_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HDL5592981.1"
                     /translation="MTKAVESKIIVGLDIGTSKVVAVVGEVLPDGVINVMGAGVCPSK
                     GVDRGGVIDLDAAVNSIQRAIEQAESIADCQIMGVTLAISGQHIVGLNEAGSSTLSGG
                     IVTQDNIESAVDMAKAIKLQDGLETLHMIPQEYHVDRLPATKNPIGLSGMRLQVQAHL
                     IACHQAWLKNLKNAVEHAKLKVDQVVFSGLASSYSVLTEDEKELGVCLIDIGGGTMDV
                     LVYTDGALRYSKVIPFAGNNITDYLARVFTTSRPEAESLKVGYGSAISPPTHNSDKKI
                     EVAGLGGRMARTFTRAQVATVTSQCYNDLLKVVEEELTQLRHELFQKGIKQELIAGVV
                     ITGGGSQIEDIVECAKSIFGSQVRVGYPLNITGLTDYVNKPQYATALGLLQYSHYNYT
                     EQGTSTDSNEDIFAPIGRGTKKIIDFFKSKF"
     gene            20597..21844
                     /gene="ftsZ"
                     /locus_tag="PXE26_000357"
     CDS             20597..21844
                     /gene="ftsZ"
                     /locus_tag="PXE26_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HDL5592982.1"
                     /translation="MFEPIIEQTQDAIIKVVGVGGGGGNAVDRMSRSADDIKGVEFFD
                     VNTDAQVLRKRTTRQTIQIGASTTKGLGAGADPMVGKQAAEEDREAIANALKGANMTF
                     IAVGMGGGTGTGAAPVVAQIAKEQGSLTVGVVTKPFRFEGPRRMRFADQGIKELSQYV
                     DSLIIIPNDKLRGLGKQTTAVDAFAAANDVLSNCVLGITNMITSSGGSTGADINVDFA
                     DVRTVMSGKGHAMIGTGFAEGEVGEGRAEKAMNDAISSPLLENVDISGASGMLINISA
                     GTDFLLEEVYAMMDLIYGFATEDAAIVFGCNYYPEMDGKVSVTLVATGIGQPEEALHM
                     PHKAQPVYAQQGNHVQATQPTQPNHAVQQPNFTQPSSYGQPNQFSGQPQPLQQPVAPK
                     PQSVDTAQIFNPNSIPGFMRNSQ"
     gene            21876..22796
                     /gene="lpxC"
                     /locus_tag="PXE26_000358"
     CDS             21876..22796
                     /gene="lpxC"
                     /locus_tag="PXE26_000358"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HDL5592983.1"
                     /translation="MTKQRTLKQAAKVTGIGLHSGKKVTLTLRPAPANTGVIYARTDL
                     EPVVYFPASADSIRDTQLCTCMVNDDGVRISTVEHLNAAMSALGLDNVIVEVDAPEIP
                     IMDGSSSPFIYLLLDAGIEEQDAPKKFIRIKETVRVEEGDKWAELKPYNKGFKLNFTI
                     DFEHPLIPKNVGSYSIDFSAENFIQQLSRARTFTFMKDVEYLQSIGLALGGSLDNAIV
                     LDDYRILNEDGLRFKDELVRHKMLDSIGDLYMCGYNILGEFSAYKSGHGVNNKLLRAV
                     LENKNAWEFVTFEDKAEVPQGYQVQQEIFI"
     gene            22969..24651
                     /gene="recN"
                     /locus_tag="PXE26_000359"
     CDS             22969..24651
                     /gene="recN"
                     /locus_tag="PXE26_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HDL5592984.1"
                     /translation="MLTQLTINNFAIVRHLILELNEGMSVITGETGAGKSIAIDALGL
                     CLGYRSESGMIRNGSDKADISATFTMQPHSPAYLWLQEHELLDEDNPQECILRRMINI
                     DGRSKAFVNNRSLPVSQLRELGQYLIHLNGQHAPQLLLKNEYQLEIVDHYATLQPLLM
                     KMAKQYGNWKELNKQVKNFQKQCQENEARKQLLEYQVEELDEFAIKANEFEEMEEKYN
                     ILSSSEELTELSDEITRLLSDDEINANSLIYKALRNAENLAEVDSQYQGILDMLNEAL
                     IQIQEASSEVAQLASKIEQDPELLQELDNRIAQTISLARKHHIQPNELWQYHATLKAE
                     LQELLDFEDNEEQLIQNEKQAYQECITLAEEIYQKRLDATHKLSEQVTKQIKHLAMEN
                     GEFFIHIEHNLEKMSANGADYVEFNLRSNLGQQPQPLAKIASGGELSRISLAVQVLTA
                     NKLSTPTIIFDEVDVGISGSAATTVGKLLRKLGEKCQVLCVTHLPQVASYGNQQFNVQ
                     KYVENNQTETQMTLLTEAERIHALARLLGGSEITETVLANAKEMLNLAKNNE"
     gene            complement(24698..24773)
                     /locus_tag="PXE26_000360"
     tRNA            complement(24698..24773)
                     /locus_tag="PXE26_000360"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(24738..24740),aa:Ala,seq:ggc)
     gene            complement(24853..26292)
                     /gene="gltX"
                     /locus_tag="PXE26_000361"
     CDS             complement(24853..26292)
                     /gene="gltX"
                     /locus_tag="PXE26_000361"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDL5592985.1"
                     /translation="MKIETLFPLDPNVKVRTRFAPSPTGYLHVGGARTALYSWLYAKH
                     NDGEFVLRIEDTDLERSTPEATAAILEGMEWLDLAWEHGPYFQTKRFDRYNQVIDQML
                     EAGTAYRCYCSKERLDEVRAEQEANKEKAKYDQHCLHNPQNDPSQPHVVRFKNPTEGS
                     VVFDDAVRGRIEIANSELDDLIIRRTDGSPTYNFCVVVDDWDMGITHVVRGEDHINNT
                     PRQINILKALGAPIPTYAHVSMINGDDGQKLSKRHGAVSVMQYRDDGYLPEALINYLV
                     RLGWGHGDQEIFSRDEMIELFDIHSVSKSASAFNTEKLQWLNQHYIRSLAPSYVAKHL
                     EWHMQTQGIDFTSGPKLEEIIPVLGERCKTLKELAESSRYFYQEFKAYDEKAAAKNFK
                     AEAVAPLAKLLEKLTACNDWTVENIHEAMNQTAAELEIGMGKVGMPFRLAVTGSGQSP
                     SMDITAKLVGKERTLARLQKAIEFIQANS"
     gene            26467..26542
                     /locus_tag="PXE26_000362"
     tRNA            26467..26542
                     /locus_tag="PXE26_000362"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26500..26502,aa:Val,seq:tac)
     gene            26591..26666
                     /locus_tag="PXE26_000363"
     tRNA            26591..26666
                     /locus_tag="PXE26_000363"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26624..26626,aa:Val,seq:tac)
     gene            26719..26794
                     /locus_tag="PXE26_000364"
     tRNA            26719..26794
                     /locus_tag="PXE26_000364"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26752..26754,aa:Val,seq:tac)
     gene            26843..26918
                     /locus_tag="PXE26_000365"
     tRNA            26843..26918
                     /locus_tag="PXE26_000365"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26876..26878,aa:Val,seq:tac)
     gene            complement(27072..28565)
                     /gene="mltF"
                     /locus_tag="PXE26_000366"
     CDS             complement(27072..28565)
                     /gene="mltF"
                     /locus_tag="PXE26_000366"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltF"
                     /protein_id="HDL5592986.1"
                     /translation="MKGLIARLFIAVALLLWAWDMIFPWQKIIHSEANHYTQIQQSKT
                     LKVGMINHPLSYFVGPEGKSGIEYDLATAFAQYLKVNLDIKTYDSSEKLFEALRNNDV
                     DIAAAGLLYHSELNDEFQIGPSYYSASWQLVYKKGSARPYRLSDLRENVIIPAGSAVI
                     PILNQLKVDNPELKWQISDKFTQEELLLKVAQGEISHTIAMSVDISAAQHINPNLAVG
                     FDLTDENPVLWYLANSSYSELQSVLLDFMSYSMETGLISRIEEKYFNHLAKFDYVDIQ
                     SYLNAIKTILPKYEPLFRAHKGELEWQMLAAIAYQESHWDPNATSPTGVRGIMMLTKD
                     TADRMKISDRTNPAQSIKAGSEYLHMLMRQMPETIPQADRIWYSLAAYNMGLGHLLDL
                     RRLTKQLGGDPDNWLDVKKNLPLLAEKRYYANLKYGYARGYEALQYVENIRRYYGSII
                     NYQRVEEQKMQEQENLPDGQIKQENSSYEKIEEKEIPTDKEITPASN"
BASE COUNT         8691 a         5511 c         6390 g         8055 t
ORIGIN      
        1 attaaatgcc ataaggggaa ttttatgttt aaaagaacat taatcggtct agccgtgtta
       61 ggtgcaagtg ttgctcaagc ggatgtatta accagtatta agcctttagg ctttattgcc
      121 agtgccatta ccgaaggggt aactgaaact aaagtattat taccggtaac tgcctctcca
      181 cacgattaca gcttaaaacc ttcagatgtg actcaattac aatctgctca attagtggtt
      241 tgggtgggtg acggcttgga aggcttttta gaaaaaagta ttgaaaaact gccgagagaa
      301 aaagtattaa cccttgaaga tgttgatgcg attgatgata ttgtcgataa agcaagcaaa
      361 aaagaagata aagacgatga tcacgatcat aaacatgaac ataagcacga acacaagcac
      421 gagcataaac acgaagggca taatcacgaa ggacataacc acgatcatca cggacatagc
      481 cacgatgaag attggcatat ttggctctca agcgaggcaa gtgagctggc agcagagcaa
      541 attgcggcac gtttaagcga acaaatgcct gaacacaaag cgaaaattgc ggaaaatctt
      601 gcaaaattta aagcaaatct aaccgctaaa aaagccgaaa ttgcgaaaca attagagccg
      661 gtaaaagcca aaggttacta cacattccac gatgcttacg gctattttga aagagaatat
      721 ggtttaaatt cattgggttc atttaccatt aacccaactg ttgccccggg tgcaaaaaca
      781 cttacagcaa tcaagaaaaa cattgcgaaa aacaaagcac aatgtttatt tgccgagccg
      841 caatttacgc cgaaagtaat tgaaacctta gcaaaagaaa ctaaagtaaa tgttggccaa
      901 ttagacccac tcggtgcaaa agttcagtta agtgcgactg cttaccctga atttttacaa
      961 gttttggctg acgaatttag ccaatgttta acaaaataag ttaaaaatcc cccatttaaa
     1021 tataaatggg ggattttgcg attacatcac ttaagctttt tttaagaatt ctgatttcaa
     1081 cataatttta ccgcaatcga cattatggtc accttgagct aaacggattc ctttgaattt
     1141 tgtacctttt ttcagtactt cagacgagcc ttttaatttt aaatctttga ttaataatac
     1201 atcgtccccg tcagataata aattgccatt actgtctttt acaattagca catcatcatc
     1261 ttgatccgtt tcttcgcccg tccattcata cgcacaatcc gggcaaacaa attgaattga
     1321 gtcgtggtaa gtattttcgc ttttacattc agggcaggtt gggtaaatca ttttaattcc
     1381 tcaaattaat aaagaaccag attatatacc gaaatccagc aaaacgctaa gcggtcatat
     1441 tttgccgatt ttttaccaat cgagctaaaa gtcagttaga atagccttaa ttacacaaaa
     1501 aggaggatac tatgatagtc gatccgaatt atcagcaaga attagaaaaa tacgaaaatc
     1561 cggtaccaag ccgagagttt attttaaata caattcgtga acataacgcc ccaatgagcc
     1621 gtgatgaatt attgtcggct tttcatattg acgatgaaga acgaatggaa ggcattcgcc
     1681 gccgtctgcg tgcaatggaa aatgacggtg aattggtgtt caccaaaggc aaacgctatg
     1741 cgttgccgga aaaaatggat ttaatcaaag gtacagttat cggccatcgt gacggttacg
     1801 gttttttgca agtggaagga cacgaaaaag gggcgactaa aagcgaagat tggtttattc
     1861 ccaacgccca aatggtaaag gtaatgcacg gtgactttgt gctggcacaa ccaaacggca
     1921 cagaccgcag aggtcggaaa gaagtccgca ttgtgcgagt gttggaggcc cgtaagaaac
     1981 agattgtcgg gcgttttttc cttgaaagcg gtatcggttt tgttgtgcct gatgacagcc
     2041 gcgttaacca agatattctc attccggatg aacaccgtat gggggcgaga atggggcaag
     2101 ttgtggtggt ggaattacag gaaagaaaag cgagttttag ccgcccggtg ggaatcatta
     2161 ctgaaattct aggcgataat ttagcgccgg gaatggaaat tgaaattgcc ctacgcaatc
     2221 acgatattcc gcacatttgg ccggaagggg tagaaaaaca aatccgccaa tttagtagcg
     2281 aagaagtgcc ggaagaagcc aagcaagggc gggtggattt gcgagatctg ccactgatta
     2341 ccattgacgg cgaagatgcc cgagatttcg atgatgctgt atttgccaaa aaagagggca
     2401 acggctggcg gttatgggtg gcgattgccg atgtaagtta ttatgttcgc ccaaaaaccg
     2461 cattagattt ggaagcccta aatcgtggta actcggtcta tttcccgaat cgggttgtgc
     2521 caatgttgcc ggaagtgctt tccaatggct tgtgttcact caatccacag gttgacaggc
     2581 tctgcttggt ggcggaaatg tcggtttcca gcaaagggga attacaagat tatcaattct
     2641 acgaagcggt aatgaactct cacgcccgtt taacttacac taaagtgtgg aaaatgttgg
     2701 aaggtgatga agccttgcgt gaacgctatg ctccattagt gccgcatatt gaagaactct
     2761 atgcaatgtt ccaaacctta atgaaagctc gccataaacg aggggcgatt gaatttgaaa
     2821 ccattgaaaa tcaatttatt ttcaatccgc aagggcgaat tgagcgaatt gagccgttaa
     2881 tccgcaacga tgctcataaa ttgattgaag aatgtatgat tttagccaat attgctgccg
     2941 ctcgttttgt ggaaaaagcg aacgaaccgg cgttatatcg gattcacgat aagccgagtg
     3001 aagaaaaatt gctcagtttt aaatcctttg tgcgtgagtg tggcttaacc tgggacgtag
     3061 gcttagatcc aaccccaaaa gattacggtg tactactgga gcaaattgcc gaacgtgccg
     3121 ataaagagtt gattcaaacg atgttgctcc gctcgctgaa acaagcagtg tatgcggcgg
     3181 ataatatcgg gcatttcggc ttggcattaa ccgaatatgc tcattttacc tcgccgattc
     3241 gccgttaccc ggatttactg ttacaccgtg caattaaata tctgatcgaa aaaggcaaag
     3301 gcaacactcg ctactatacc gatggcggtg gttatcacta caagttagat gatatggacg
     3361 aattcggcga taaatgttct gccaccgaac gccgagctga tgaggcaacc cgagaagtgg
     3421 cagattggct gaaatgcgaa tttatgcaag atcatcttgg cgaagagttt gatggcgtga
     3481 tttcgagtgt taccggcttt ggcttatttg taaaactcaa tgagctttta attgacggat
     3541 tggttcatat ttcaacgctg gataatgatt attaccacta tgatgcggac cgacaacgtt
     3601 taatcggtgg cagtgggatc atctatcgtt taggcgatgc agttagagta aaagtaatca
     3661 atgtgaattt agacgagaaa aaaattgatt ttgagttact caccggtaat aagaaaaccg
     3721 gcaaaaccgc caagaaaaaa gcaaaagcga cagaggttcc tgttttcaaa gagcctaaaa
     3781 cggtaaaaaa agccaaaaaa gtcgctgaga aaaaaccggc aaaatctgca aaaaaacgga
     3841 caaaaacgac cgctagtaaa tcaaggaaaa aatagcaaat ggattacaaa aaacaaattt
     3901 tattcagcct tttatttgct ttagtaattg caataataag ctattttttg tttacctata
     3961 tcccgtttga ttgtagcgat ctgagcaaac tcaacgattc acaacgttta gagtgccgaa
     4021 ctgccgaatt tctgggcgtt tattactggc tgccgcacac taccacgctg tttttcggct
     4081 cggtgttatt atattgggcg gtttatggca tgatttcatt agtgcaagca gtgctcaaac
     4141 gctaacaagc agttttgttt ttgcaaaaag ttgcaaatct catctgaata atccttccaa
     4201 gatcaaaggt ctatcaaaaa agatagacct ttattgtgta aataaactaa aactccttga
     4261 tagatgtatc acatatctat aaaattccag caattaagtg ggaaaaagtg gtaaattgtg
     4321 gaacttttcc ttaaatttaa cctcatttaa aaaggtaaat cagtaaaatg tttcgtggtg
     4381 caagttcaat cagcattgat agcaaagggc ggatcgctat tccgacccgt tatcgtgccg
     4441 agctattgga aaaacatcac gggatcttag tttgcactgt ggatatccgc cagccttgtt
     4501 tgttgcttta cccacttcac gaatgggaaa tggttgaaca gaaattgttg gcactatcta
     4561 attttgaccc tgttcaacgc cgtattcagc gagtaatgca aggctttgct accgaatgtg
     4621 aaatggattc ggcagggcga atactgctta gccctacact tcgccaacac gcacaattag
     4681 agcaacaaat tatgctggtt ggacaattaa acaaatttga aatttggcaa gataaacaat
     4741 ggcaagcaca aattgccgaa gatcttgctt ttggcagttc ggcagaaatt ttagactgcg
     4801 aagcattgaa aaacctgtct ctctagtaat tggaaattga gatgagcgag aacccaaaac
     4861 atattacagt attattgcac gaagcggttg acggcttggc aattaagcct aacggtatct
     4921 atattgacgg tactttcggg cgtggcgggc attctcgctt gattttatcc aaactgggcg
     4981 aaaatgggcg attaatcgca actgatcgtg acccacgagc gatagccgaa gctcaaacga
     5041 ttagtgaccc tcgttttcaa attgaacata cggcattttc tgccattccc gaactgtgtg
     5101 aacgaatggg gttggtgggc aaaattgacg gtattttatt ggatttaggt gtgtcttccc
     5161 cgcagcttga cgaagccgaa cgaggcttta gttttatgcg tgacgggccg cttgatatgc
     5221 gaatggatac caccaaaggc ttatcggcag ccgagtggct tgcccaagtt tcggcagaag
     5281 atttagcttg ggtattgaaa gaatttggcg aagagcgttt tgccaaacgg attgcacaag
     5341 cggtcgtttc ttacaataaa tctgcaaatg aaaaaatcag ccgcactttg cagcttgcgc
     5401 aaattattgc ggatgcggtg ccgtttaaag ataagcacaa acaccctgca acccgttcgt
     5461 tccaagcaat tcgcattttt atcaatggtg aattagacga gctggaaaaa gctttaaatt
     5521 ccgcattaac ggtgttagcc cctgaagggc gtttgtcgat tatcagcttt cattctctag
     5581 aagaccgaat ggtgaaacag tttgtgcgta agcatagtaa aggaatggac gtaccccgtg
     5641 gtttaccgat tttagaagca gagctaacca aaaatattcc gctgaaaacc attggcaaag
     5701 cgattatgcc gagcgaagcc gaaattgaag caaatgcccg ctcacgcagt gcggtattgc
     5761 ggattgccga aaaacgctaa cagtaaatag ggaagaatat gtcgaacgaa cgttatccgt
     5821 tacatcaaat catcattgat gatatcttta gccataacaa agtggctctt ttattgttga
     5881 ttggtgtagt gatttcagca gtggctacga tttggataac ccaccagact cgtttatcgg
     5941 tgagcgaaca agggcaactg attcaagcaa accaaaagtt ggaaagccaa tatactaatc
     6001 tgcaattaga agaaaacagc agaagcagtc gggcaagagt tgatgccgcc gctaaatcgt
     6061 tcggattaca gccgattaaa aaagagcaag aaattatttt agttgaataa aaaatggtta
     6121 aatcagttaa attaaaacgt aagcaagaag cccctgtcgc aaaagcagag cctcaacaag
     6181 cagaaggtaa aaaaacaccg agttttttac ctactcgctt tagagtggtt gtgtttttta
     6241 tgctattaat ggttggtggc ttactagcac aaaccgccta tattcagctt tttgactctg
     6301 aaagattaat taaagaggct aataaccgct cacttcgtac taaagaactc caatttaccc
     6361 gtggacgtat tttagatcgt aacgggcgtt ttctctctat tagtgtgcca atgtactcat
     6421 taacacttga cccgagagaa tactttgata ctaagctgcg tcgttctaac gaaagctggc
     6481 gtgccttagc gattgaaatg gaaacatcaa aaggtaaaat tgaggcaaac gttaataaat
     6541 ttattgaaaa gaaaaatttt tcaaaagaaa aagtagattt tgatccacgt tctattttaa
     6601 atactaaaag tgaaggttat tggactcagc ttgcccaagt tacaggtttg gattacaaca
     6661 gtttaataga aaaagtacgg aataacccta gctcggtttt tttacgttta gataacgaaa
     6721 atttagtaag agaacgccag aaattccaag cgttaagcaa agaaatcggc cgttcctata
     6781 atgacataat ggacgagctt tatagcaaaa accgccagcg attcctttac ttatcccgtc
     6841 atcaatctga agcgatcagc gaatatgcaa aagaactaga tattgatgca ttagtgatta
     6901 aagtcgaatc acgccgtttt tacccgctgg cagaagaatc ttcacagttg atcggtttta
     6961 ctgataaaga tgatatgcac ggttcggaag ggctggagcg tagttttgat tccttactta
     7021 tcggcaaaaa cggtaaacaa attatccgaa aagatgccaa aggcaatatt gtggaaaata
     7081 tccgttcgga gaaacagtac gatccgcaag atgttatgtt aagcattgat gaagaattgc
     7141 agtctatggt gtacggtgaa atcaaaaaag cggtacagga aaataatgcg gaatcaggca
     7201 ctgcggtttt ggttgatgtg caaaccggcg aaattttggc aatggcaaat gccccttcat
     7261 tcaacccaaa caaacgggat agttttaaac ctgaattaat gcgtaaccgt gctattaccg
     7321 acacttttga accgggttca acggtgaaac cttttaccgt attaaccgca ttacaaaatg
     7381 gggtaactta tcgtgatgaa gttattggca ctcgcccatt tgtcgtcaat agacatacaa
     7441 ttaaagacgt tgctccaagg gacagcctta cgcttaccgg catcttgcaa aaatccagta
     7501 acatcggggt cagtaaatta gccctcagaa tgccggcaaa tgcgttagtg gatacttaca
     7561 cgaaagtcgg tttcggtaaa gacaccggtt taggcttggg tgaacaacga ggtacgaacg
     7621 gtgatcgcaa acgttgggcg gatattgaac gtgctaccct ttcctatgga tacggtttaa
     7681 atgtgacccc attacaactt gcccgtgctt atgcgacttt aggaagtttc gggctgtatc
     7741 gcccactttc gattaccaag gtcgatccgc cggtgattgg cgaacgggtg ctaccggaaa
     7801 aaaccacccg agatgtcgtg catatgatgg aaagcgttgc ggctaaaggc gaaggcggac
     7861 accgtgcagc ggtggacggc taccgtgtag ccatcaaaac cggtacagca cgcaaattag
     7921 aaaaaggtaa atatgttgaa aaatatattg cttataccgc agggcttgcc ccggcaagcg
     7981 atcctcgctt tgcattagtg gtattaatca acgaacctaa agcaggcaac tattatggtg
     8041 gctttgtttc tgcaccactg ttctcacgca ttatgggtta caccttaaaa caacgtaata
     8101 ttaagccgga taacttaacg gaaaataccc aaagtgccgt gcgtgaaatt aaattagaac
     8161 gccctatcaa ttaaggttag ctatgaaacg tttactccct tttctgacag aacttgatgc
     8221 ttgggtggaa gaactcaccg agctaaaaca aatgacactt gatagtcgcc aagttcaagc
     8281 cggtgatctc tttgttgctt taaaaggaca tcaagtcgat ggcagaaaat ttattccgaa
     8341 tgcgatagaa caaggagcag caattatttt ggctgaggct gatgaagatc aaccggaaat
     8401 tgagcttgat ccgaaatttg caaaatttaa cctagatcgc accgcttgtt gcaaggttgt
     8461 ctctgttcca cgtctgccaa aattgctctc tgaaattgca ggagctcttt accataaccc
     8521 gtcacacaag ctgactttag ccggcattac cggcacgaac ggtaaaacga ctactgctca
     8581 attattagca caatggcata atttattggg tgggaaatcg gcagtaatgg gtactatcgg
     8641 caacggtttg tacggacaag tgcaagaagc ggtaaatacc accggctctg ccattgaaat
     8701 tcagcataat cttgcgaact ttgttgaact tggagcggat ttttgtgcga tggaagtcag
     8761 ctctcacggt ttggctcaat ttagagccga agccttggat tttgatttag cgatctttac
     8821 gaatttaagc cgagatcacc ttgattacca caacacgatg gaagagtatg cccaagccaa
     8881 attccgtctc ttcaacgaat taagcaccaa agctcaagta attaacgccg atgatgaaat
     8941 cgggcgtgaa tggctgacac aattaccaaa tgcagttgcg gtaagcaccg atccgaagtt
     9001 tgcaggcaac caccaatttg tcaaagccac tgcggtaaaa tttaccctac aaggggcaag
     9061 tattgcgttt gaatcaagtt ggggcaatgg cgagttacat agccgtttaa tcggggcttt
     9121 caatgtaaat aatctgctta ccgcctttgc cggactttta gctcttggct ttgatattca
     9181 agaactggtt aaaaccgccc cgaatttagt tggcgtagca ggtcgaatgg aatgcattac
     9241 cgctccaaat aagccaatgg taattgtgga ctatgctcac acccctgatg ctcttgaaaa
     9301 agccctacaa gcggctcgtt tacattgcga aggcgaactt tggtgcattt tcggctgtgg
     9361 tggagaccgt gacgccggca aacgcccatt aatggcgacg attgccgaga aattaaccga
     9421 taaagtgatt gctacagacg acaaccctcg caccgaagat aatcaaaaga ttatggcaga
     9481 tattgtgaaa ggttttagta aaccccaaca aattatccac aatcgtgaag aggcaattaa
     9541 aaccgccatt gagcaagcta aagccacaga tgtgattcta atcgcaggca aaggtcacga
     9601 agattatcag attattggca cagagaagtt acatttttcg gatcaggaaa cggcaaggaa
     9661 atatctgttt taatgtcact ttctttgcac aagcaaagaa aagtgacagt gacaaataca
     9721 aaatgctcgt aattaatttt ataaagaaaa agataaatca atgataaaac taaccaccca
     9781 acaaatcgct gaaatcctaa atgccaaatt gatcggcaat ggcgaaactg tggtagaaac
     9841 caccagcacc gacacccgac aagcggttga aaacggctta ttttttgcat taaagggcga
     9901 gaactttgat gctcatcact atcttcaaaa tgcagtcgca caaggttgtg tagcggttgt
     9961 ggttgagcgt gagtgtgaaa ttgatgtacc acaacttgtg gtggcagata cccgtttggc
    10021 attgggggaa ttggcgaaat ggttaaaagc taagctgaac ccgaaaacgg tagcgatgac
    10081 aggttcttcc ggcaaaacaa ccgtcaaaga gatgacggca aaaattctgc aaaaaatgac
    10141 cgcttgcgaa caggaagtgc tttatacttt tggtaactta aacaatgact taggtgtacc
    10201 gatgaccttg cttcgcttaa ccgaacagca taaatatgcg gtcattgagc tgggggcaaa
    10261 tcatatcggt gaaatcgctt ataccaccgc tatcgctcag cctgatgcct gcttggtgaa
    10321 taatgtggct gcggcgcatt tagaggggtt tggttcatta gcaggcgtgg cacaagccaa
    10381 gggcgaaatt tatcgtggct tgaaagaaaa tggcaaagcg attgtcaatt tagcttttta
    10441 ttatccgcaa tggcaaaaag agattggctc acgggaaatg caatctttct cttatatcgg
    10501 gtcagattcg gattcttacg cagattactg ggcggaagat gtagaactgc atttaagcgg
    10561 ttcacgcttt acgctacata ccccacaggg cgaaattgct attgatctgc cttatttggg
    10621 caaacataac gtgagcaatg ccttagcggc aacttcgctg gcgatgtctg ttggggcaac
    10681 gctagaagca gttaaggcag ggcttgagca gcgttcaatg gtaaaagggc gtttgtatcc
    10741 ggtgcaaatt aacgaccact gtttgtttat tgatgacact tacaacgcca atgtggattc
    10801 aatgaaatcg gcgatttctg ttttggaaaa ttatccggct tatcgtattt ttgcagtggg
    10861 tgatatggcg gaattgggtg aagaaagtag caaatgccac caagaagtag cggattttgc
    10921 caaaaatgca gcattagatt taatcgtgag ctttggaaaa gaaagtgcgg taatcagcca
    10981 acaggcagaa catcatttta ccgataaaca gcaaatggtt gatttcctac tgccgattat
    11041 tttgcaaaaa atcgaacaaa aacaaccgct tgtattattg gcaaaaggct ctcgtagcca
    11101 gaaaatggaa accgtgattt ccgaattgtg taaaccgttt aacctaaatt tctaattatt
    11161 tttaaggact aagcaatgtt agtttggctt gcagaactat tggttcaata taacacagcg
    11221 tttaacgttg tctcttatat tactttccgt gccattatgg cgttattaac tgcaatggga
    11281 atcgggcttt ggatcgggcc gaaagtaatt cgccgtttgc agatcttaaa atttggtcag
    11341 gaagtgcgta atgacggacc ggaaagccat ttcaaaaaac gtggtacgcc aacaatgggc
    11401 ggagtgatga ttctcgcagc gattggggtg agtacattgc tttgggcaga tctgcgtaat
    11461 tcctatgttt ggttcacgct gtttgtgcta tttggctacg gtgcagtggg ctttgttgat
    11521 gattatcgta agatctctcg taaaaatacc gatggtttga ttgcccgttg gaaatatttt
    11581 tggttatctg ctatcgcatt agtggcggtg tttggtatgt atgcggtggg taaagatacc
    11641 gctgcaacac aattagtcgt gccgtttttt aaagatgtga tgccgcaact cggtttattt
    11701 tatattgtgt tatcctattt cgtgattgtc ggcaccagta atgcggtaaa cctaacggac
    11761 ggcttagacg ggcttgcgat tgtgccaact attatggtcg catctgcctt tgcgttaatt
    11821 gcgtgggcaa ccggtaactt taattttgca caatatttac atattccttt tattccaaat
    11881 gccggtgaat tggttatttt atgtactgcg attgtgggag caggtttagg gttcttatgg
    11941 tataacacct accctgcaca ggtgtttatg ggcgatgttg gctcactttc gctcggcggt
    12001 gcattaggcg tgattgcagt attagttcgc caagaattat tattggtggt aatgggcggt
    12061 gtatttgtgg ttgaagccct ctcggtgatt ttacaagtag gttcatacaa attacgccaa
    12121 aaacgtattt tccgaatggc tccaattcac caccattttg aactcaaagg ctggtctgaa
    12181 ccacgggtta tcgtgcgttt ctggattatc acgctaatgc tggttttagt cggcttagta
    12241 acattgaaat tacgttaatt gattgaataa ggtgcattga gataatgtac cttatgttat
    12301 ttttaaatta cagaataaat tatgcaaaaa caatacgaaa acaaaaccgt tactattatc
    12361 ggcttaggta caacagggtt atcttgtgtg gatttcttta agaaaaaaaa tgccaatatc
    12421 caagtgattg acacccgagc aaacccagcc ggagcggata aattggacgt aactattccg
    12481 ttgcataccg gtgggttaaa cagtgaatgg ttgctgaaat ctgatcttat tgtaattagc
    12541 ccaggtttag ccgttgccac acctgaaatt cagcaagcga ttcaagctgg tgttgaaata
    12601 gtcggtgatg ttgaactgtt ttgtcgggaa gcgaaagctc cgattattgc gatcaccggt
    12661 tcaaacggca aaagtaccgt aacgacttta actaccgaaa tggcgaagca agcggggatt
    12721 aaagtgggaa tgggtggcaa catcggtgtg ccggtattaa gtttgctgga gggcgattat
    12781 gacctttttg tgctggagct atccagcttc cagcttgaga caacttattc actgaaagca
    12841 aaagctgcca ctgttttaaa tattagcgaa gatcatatgg atcgctacga ttcgattgcc
    12901 gactatcgcc aagcgaaatt gcggatttac gataatgcgg aaaatatcat cgtaaacggt
    12961 gaagatgccc aaacttaccc gatacaagcg gtcaaaaaag tgattcgttt tgcagaacaa
    13021 aatgcggaat atagcctacg caatcagatg ctttattcag gcgatgatgc aattatccaa
    13081 actaaacaga tgctgattag cggccgtcat aatgagatga atgcgttagc ggcgatggca
    13141 ttagcagaag cggcgaatgt tcctcgtgaa ggcattgtga aagctttgca aatttatggt
    13201 ggtttgccac accgtttcca agcggtggca accaatgatg gcgtgcgttg ggtcaatgat
    13261 tccaaagcga ccaatgtggg tagcacggta gcggcattaa acggcttgaa tattgccggt
    13321 acactttatt tacttttagg tggtgacggc aaggctgcgg atttttccga actcaaacca
    13381 ttaattaata agccaaatat tgtctgctat tgtttcgggc aagatggagc ggcattggca
    13441 gaattaagcg aacaaagtgt gttggttgaa acgatgcagc aagcaattga agcaatccgc
    13501 ccacaactga aaaaaggcga tatggtactg ctttctccgg cttgtgccag tttagatcag
    13561 tttaaaaact ttgagcaacg tggcgaggta tttatggcat tagcacaagg acagcacgca
    13621 taatgttaga aagaattaag tcggaatggg ataaatgggt cagattaacc ccttctaatt
    13681 cactttatga cagaactcta atttggctat ttttaggcct gctaattatc ggttttgtga
    13741 tggtaacatc tgcttcactc ccagttagca caaggttgaa taacgatcca ttttattttg
    13801 cgattcgaga cgggctgtat attattgctt caattatctt ttgttatgtt tttgtacaaa
    13861 tcccaattga aaaatgggaa aagcataact tggcactgtt ttttatttca atcggttttt
    13921 taatcgccgt actcattttc ggccgctcaa ttaatggtgc agtgcgttgg attccgttgg
    13981 gtattctcaa ctttcagccg gcagaattag ccaaattagc ggtcatttgc tattttgcca
    14041 gtttctatgt acgtaaatat gatgaaattc gtaaagaaaa agccagtttc tggcgaccgg
    14101 cagtgatttt attcttattc ggcttcttgc tgattttgca gccggattta ggtagtacct
    14161 ttgtattatt tgttctcact ttctcaatgc ttttcattgt gggggcaaaa attatgcaat
    14221 ttatgttttt aggcgtggtg ggaacggtgt tatttgcggt gttgatttta acctcggaat
    14281 accgtttaaa acgtgttacc tcctttatgg atccgtttgc tgatgcttat ggcgacggtt
    14341 tccagctctc gaactcacaa atggcatttg gacaaggtga attttgggga caaggtttag
    14401 gtaattcggt acaaaagcta gaatatttgc cagaggcaca tactgacttt gtaatggcgg
    14461 ttattggtga agaatttggt ttctttggta ttgcttgcat cgtactttta cttattctat
    14521 taacggtgag agccttaaaa atcagtaaag aatctttggt gctggaagag cgttttaaag
    14581 gctatatggc atttgggatt gcgatttggg ttttcctaca aggcttcgta aacttagggg
    14641 tggcatcagg tttgctgcca acgaagggct taaccttccc attagtgagt tatggtggtt
    14701 cgagtttggt aattatgtcg attgcgattg cagttttgct acgaattgac cacgaaaacc
    14761 gtgccgagcg aatcgggcac gcaaaaatta aaaccatcta gccgagcggt ctgcaacgtt
    14821 acaatttgca aaattttaca aaaatgagac cgcttgtatt agctggaaag cataaaaatt
    14881 cagtaaaata gcacgtttta gaataaaaaa gagttgaaaa tggcgaagaa attattagta
    14941 atggcaggtg gaacaggggg gcacgttttc cctgcaattg ccgtagctcg agagctacaa
    15001 aaacaaggct ggcaaatccg ctggctgggg acgaaagacc gaatggaagc cactcttgtg
    15061 ccgaaacacg gtattgagat tgattttatt gaaatctcag gcttgcgggg taaaggcgtt
    15121 gcagcattgt tgaaagcacc gtttgctatt tttaaagcgg tgatgcaagc ccgcaaaatc
    15181 attaaaaatt atcagcctga tgcggtgttg ggaatgggcg gttatgtgtc cggtccgggc
    15241 ggtattgcgg ctaaattatg tggcgtgccg gtgattttac acgagcaaaa cgcagttgcc
    15301 ggcctaacca atgtgtggct atccaaaatt gcccgcaagg tgttacaggc tttccctact
    15361 gcttttaaag aggccgaagt agtaggtaat cctgtacgtg aagatttatc tgctcttccg
    15421 ctgccgaatg aacgtttcgc caaacgaggc tacccgatta acattttagt aatgggtggc
    15481 agccaagggg caagagtgat caaccaaacc gtgccggaag tggcaaaagt gttgggtaat
    15541 aatgtgttta tcagccacca agtcggtaaa ggtaatttag ccggtatcga agaagtctat
    15601 caacaaaccg gcaatgggat tgcttccgag tttattgatg atatgaaagc cgcgtatgag
    15661 tgggcagatt tggtgatttg tcgttccggt gcgttaacgg tgtgtgaaat tgccgccgta
    15721 ggtctgcccg ctgtgtttgt gccgttccaa cataaagaca ggcaacaatt tttaaacgct
    15781 aactatttgg cggcagatgg agcagcagtg attatcgaac agagcgattt cactccaaag
    15841 gcattacagc aagccttaga acccttaatt gccaatcgcc aactcttatt ggatatgtca
    15901 atgcgagcca gagcaaaatc caccccaatg gcagcaaaac gtgtagcgga agtgattatt
    15961 caagaagcga attaacttac tacaagcggt cgtttttggt aaaaattttg caaaatgtaa
    16021 ccgcttgcga atagattaaa aggacaataa atgaaaaatt tccaagataa agtcaaaaaa
    16081 ttagtgcctg aaatgcgtcg tgtcagccaa attcatttta tcgggattgg cggagccggt
    16141 atgagcggca ttgcggaagt gttattaaac gagggatacc aaatttcagg ttcggatatt
    16201 gcagacagag cggttacaca acgtctatcc gcagccggag cgaaagtctt tatcggacac
    16261 caagcagaaa atattgctgg ggcgagtgtg gtggtggttt ctactgcgat tgatgaaacc
    16321 aaccctgaaa ttattgccgc tcgagaagct cgaattccgg tgattcgccg agcagaaatg
    16381 cttgccgaaa ttatgcgttt tcgccacggc attgcgattg caggcacaca cggtaaaacc
    16441 actacaaccg caatgatttc aatgatctac accgaagcaa aattagatcc gactttcgtg
    16501 aatggcggtt tggtaaaatc taccggcaaa aatgctcatt tgggggcgag ccgttattta
    16561 attgccgaag ccgatgagag tgatgcttct ttcttgcact tgcagccaat ggtgtcggta
    16621 gtaaccaaca ttgagcctga ccatatggac acctatggtg gcgattttga gaaaatgaaa
    16681 gagacttacg tacgattttt gcgtaactta cctttctacg gcttagcggt aatgtgtgcc
    16741 gatgatgaaa cggtaatgga aattgctcct cgtgtcggca gacaagtgat tacctatggc
    16801 tttagcgaaa atgcggatta ccgaattgaa gattaccagc aaaccggctt ccaagagcat
    16861 tacaccgtag tttgcccaag cggtgaacga attgatgtgc tgttgaatgt gccgggtatg
    16921 cacaatgcct taaatgcaac cgctgcgtta gcggtggcaa aagaagaagg gattggcaat
    16981 gaggcgattt tagctgcttt agctgatttc caaggggcag gacgccgctt tgaccaatta
    17041 ggttcattta ttcgcccgaa cggcaaaatt atgttagttg atgactacgg ccaccaccca
    17101 actgaagttg atgtaaccat tcaagccgct cgttcaggct gggaaggtaa acgtgttgtg
    17161 atgattttcc aaccgcaccg ctattctcgt acccgtgatt tattcgatga atttgtacaa
    17221 gtactgtcta aagtcgatgc cttgatttta ttggatgtgt atgctgccgg cgaagctccg
    17281 attgtggggg cagacagtaa agccttagcc cgttcaatcc gtaatttagg taaggtcgat
    17341 ccgattttgg tttcagatac cgatcaactt ggcgaggtat tagatcaaat tattcaagac
    17401 ggtgatttaa ttttggcaca aggtgcgggc agtgtaagcc gcatttctcg tggcttggct
    17461 gagagctgga aaaattaaat actctctccc cttgcgggag agagaccgaa aaatacttcg
    17521 ttcagaagta tttttcagag agagggtata tatttaaagg atttcaaatg agtattaaaa
    17581 acgaaaaaat tgccgtctta ttcggtggcg tttcgcaaga gcgtgaagtt tcactgaatt
    17641 ctggtgcagc ggtaacagct gcattaaaaa gtttaggcta taacgtagaa ggcattgata
    17701 ctaaagaatt cccgattgaa aaattaaaag aaaaagggat tcagcgtgta tttaatattt
    17761 tacacggcgg tattggcgaa aatggcgtac tgcaaggtgc gttagagcaa atgggtattc
    17821 cttacaccgg ttgtggcgta atggcatcag cagtgacgct ggataaattc cggactaaat
    17881 tattatggaa tgcagtaggt ttaccaacag cggatatggt ggtggttcag cgtggacaag
    17941 cggtcgattt tgaccaaatt attgcaaaat taggcttacc ggtatttgtg aagtcttcgt
    18001 gtgaaggctc aagtgtgggt gtattcaaag taaaaaccaa agaagaattg gcaccggcaa
    18061 ttcacgaggc attaaagttt gattccattg tgttggtgga agaattttta gccggtaatg
    18121 aatattctgt accggtatta gacggacaag ttctaccggc ggtacaagta attccggacg
    18181 gcgaatttta tgactaccac gcaaaatatg tgtcggataa cacccaatat gtagtaccgg
    18241 cattaaatga cgaacgccaa gcagaggtcg ccaaattagt gaaagcggct tacgatgtgg
    18301 ttggctgtcg aggttggagc cgtattgatg tgatggaaga tggcgaagga aaattccgct
    18361 tggttgaagt aaataccaac ccgggaatga ccagtcacag tattttccca aaatcagcag
    18421 caacagttgg tatttccttt gaaaaattag ttgaacgcgt attggagtta agtgcttaat
    18481 gggcatcttc cgcaagaaga acagcacaaa tgtgcgtttg aatgttctta atccaaaaac
    18541 acctgtttct ccacgtaaat ggctagtatt cattaagcca ttaattgtgt tattatgtac
    18601 actatttgta ttcggtgtgt atagtaattg gcaaaatata ctcgaaagtt gggataaaac
    18661 accgattcgc gcttatgcat taacacataa aacacaattt acaacaaatg cagatattcg
    18721 tgaaactttg tctaaagaac ctgctctaaa aggatatttc ggacaaaata ttcaagaggt
    18781 caaagataag cttttatcta taccttgggt taaagatgtg gctgttcgta aactttatcc
    18841 cgaccgatta agtattactt tgctagaaca taaacccgtt gcaatttgga atgatactaa
    18901 ctttgtctca gaacaaggaa ccgtctttag tttaccgaaa gacagaatcg ataaaaatgg
    18961 acttccatta ctctatggtc cagatacgga aggaaaaagt gtattagagg catggaataa
    19021 aatccgagct gatctaaatg cccgcaactt ggatttaacc tccgtttctg tagataatcg
    19081 aggttcttgg acaattaggc tttctaatca agtagaatta agattaggaa gaggggaatg
    19141 gacttctaaa attgatcgtt ttgtaacaat ctttcctgaa attcatatac ctgaaggtaa
    19201 tagattagct tatgttgatt tacgttatcc acatggcgcg gcggttggat ttagtcctat
    19261 aaaaaattaa actcagtgaa cacaaaaaca ttatgacaaa agcagtagaa tcaaaaatta
    19321 tcgttggtct tgacattggg acatcaaagg ttgttgccgt tgttggtgaa gtattacctg
    19381 atggtgtaat taatgttatg ggagctggcg tttgcccttc taaaggagtc gatcgaggtg
    19441 gcgttattga tcttgacgct gccgttaatt ctattcaaag agccattgag caggcggaat
    19501 ctattgccga ttgtcaaatt atgggtgtaa cactggcaat ctcaggtcag catattgttg
    19561 gtttaaatga agcaggatca tcaacattat ctggaggtat tgttacccaa gataatattg
    19621 aaagtgctgt ggatatggca aaggcaatta aattacaaga tggcttagaa acattacaca
    19681 tgattccaca agaatatcac gtggatagat tgcctgcgac taaaaatcca attggcttat
    19741 cgggtatgcg tttacaagtt caagcacact taattgcttg ccatcaagct tggttaaaaa
    19801 acttaaaaaa tgcggttgaa catgctaaat taaaagtcga tcaagttgta ttttcaggtc
    19861 ttgcctctag ctattctgtt ttaactgaag atgaaaaaga gctgggtgtt tgcttaattg
    19921 atattggtgg cggtacgatg gatgtactag tttataccga tggagcatta agatacagta
    19981 aagtcattcc atttgcaggt aataacatta ctgattattt ggctcgtgta tttacgacat
    20041 ctcgccctga agctgaaagc cttaaagtag gttatggtag cgcaatttcg cctccaaccc
    20101 ataattcaga taaaaaaatt gaggtggcag gactaggtgg acggatggca agaaccttta
    20161 cccgagctca ggtggcaacg gttacctcac aatgttataa cgatttgcta aaagttgttg
    20221 aagaggaatt aacccaatta cgccatgaac ttttccaaaa aggaataaaa caagagttaa
    20281 ttgccggtgt agtcattact ggtggtggct cacaaattga agatattgta gaatgtgcta
    20341 aatcaatttt tggttcacaa gttcgtgttg gatatccact caatattact ggcttaaccg
    20401 attatgtgaa taaaccacaa tatgcaacag cattagggct tttacaatat agccactata
    20461 attatactga acaaggtaca agtacagatt ctaatgaaga tatctttgct cctattggtc
    20521 gtggaaccaa gaaaatcatt gacttcttca aatcaaaatt ttaatagtgt taaaataaac
    20581 acgcagggag ataaaaatgt ttgaacctat tattgaacaa acgcaagatg ctatcattaa
    20641 ggtagtgggt gttggtggcg gtggcggtaa tgccgtagac agaatgtctc gctctgccga
    20701 tgatattaaa ggtgttgaat tctttgatgt aaatactgat gctcaagttt taagaaaaag
    20761 aaccacacgc caaactatcc aaattggagc aagtacaact aaaggtttag gtgcaggtgc
    20821 tgatccaatg gtaggaaaac aagctgccga agaagatcgt gaggctatcg ctaatgcatt
    20881 aaaaggtgca aatatgacct ttattgctgt tggtatgggt ggaggtaccg gtaccggagc
    20941 agcccctgtt gttgctcaaa ttgccaaaga gcaaggctca ctaactgtag gcgttgtaac
    21001 aaaacctttc cgcttcgaag ggcctcgccg tatgcgcttt gcagaccaag gcattaaaga
    21061 gctttctcaa tatgttgatt ctcttattat aattcctaat gataaattac gtggtttagg
    21121 taagcaaaca acagcagtag atgcctttgc cgcagcaaat gatgttttaa gtaactgtgt
    21181 gcttggtatt accaatatga ttaccagttc gggcggttct accggtgcag atattaacgt
    21241 ggacttcgcg gatgttcgta cagtaatgtc tggtaaggga cacgctatga ttggtacagg
    21301 ttttgctgaa ggtgaagttg gtgaaggacg agcggaaaaa gcaatgaatg atgccatttc
    21361 tagtccatta cttgaaaatg tggatatttc aggtgcaagt ggtatgctca tcaacattag
    21421 tgctgggaca gatttcttat tagaagaagt ttatgctatg atggacttaa tttatggctt
    21481 tgcaacagaa gatgccgcaa ttgtatttgg ttgtaactat taccctgaaa tggatggaaa
    21541 agtgagtgtc actcttgtcg caacaggaat aggccaacct gaggaagctc tacatatgcc
    21601 acataaggct cagccagtat atgcacagca aggaaatcat gttcaagcta cacagcctac
    21661 tcagccaaac catgcggtac aacaaccaaa ctttactcaa ccgtcaagtt atggtcagcc
    21721 aaatcaattt agtggtcaac cacaaccact acaacaacct gtggctccaa aaccacaatc
    21781 ggttgataca gcacaaattt ttaacccaaa ttcaattccg ggttttatga gaaatagtca
    21841 ataacttcca ctcatttcgg aagtaaggac aaaatatgac taaacaaaga acattaaaac
    21901 aagcagcaaa agtaacaggt attggcttac atagcggcaa aaaagtaacc ttaacgttac
    21961 gccctgcccc agctaataca ggagttattt atgcccgtac cgatttagag cctgtcgttt
    22021 atttccctgc aagcgcagac tctattcgtg atacacaatt atgcacatgt atggtaaatg
    22081 atgatggtgt tcgtatttca acagtagaac atttaaacgc agcaatgtca gcattaggct
    22141 tagataatgt tattgttgaa gtagatgcac ctgaaattcc gattatggac ggtagttcaa
    22201 gcccatttat ctatctttta ttagatgccg gcatcgaaga acaagatgca ccgaagaaat
    22261 ttattcgcat taaagaaaca gtacgcgttg aagaaggcga taaatgggcc gaattaaaac
    22321 catacaataa aggttttaaa ttgaacttca ctattgactt tgagcaccca ttaatcccca
    22381 aaaatgtagg gagctattcc attgattttt ctgctgagaa ctttattcag caactaagtc
    22441 gagcgagaac ctttacattt atgaaggatg tagaatactt gcaatctatt ggtcttgcat
    22501 taggtggaag ccttgataat gctattgtat tagatgatta ccgaattcta aatgaagacg
    22561 gtttacgatt taaagatgaa ctggttcgcc ataaaatgct ggattcgata ggtgacttat
    22621 atatgtgtgg ttataatatc ctaggtgaat ttagtgcata taaatcaggt catggcgtta
    22681 ataataaatt attaagagct gtattggaaa ataaaaacgc ttgggagttt gttacctttg
    22741 aagataaagc agaagtccca caaggttacc aagtacaaca agaaattttt atttagtcta
    22801 aatggcttaa aagacgaaca gaaatgttcg tcttttattt tgcaaatttt ttctaatatt
    22861 taaccgcttg caacccgcct cattagcgat tttttcgccc ttatctattt actgtttaaa
    22921 aaaacagttg tactatatac ccatacagtt aatcttgtgt ggtgtattat gcttactcaa
    22981 cttactatta ataattttgc gattgttcgc catcttattc ttgaattaaa tgaaggtatg
    23041 tctgttatta ccggtgaaac cggtgccggg aaatcaatcg ctattgatgc cttagggcta
    23101 tgcttgggtt atcgttctga aagtgggatg attagaaacg gttcggacaa agcagatata
    23161 agtgcaacct ttactatgca gccacatagc cctgcttatt tatggctaca agagcatgaa
    23221 ctgcttgatg aagataatcc tcaagagtgt atcttacgcc gtatgattaa tattgatgga
    23281 cgctcaaaag cctttgtaaa taaccgatca ttacctgttt cacaacttcg agagttgggg
    23341 caatatctta ttcatttaaa tgggcaacac gcaccacaat tactcctaaa aaacgaatat
    23401 caacttgaaa tagtcgatca ttatgccacg ttacagcctc tattgatgaa gatggcaaag
    23461 caatatggga attggaaaga actgaataag caggtaaaaa atttccaaaa acagtgccaa
    23521 gaaaatgaag ctcgcaaaca gctattagaa tatcaagttg aggaattaga tgaatttgca
    23581 attaaagcaa acgaatttga agaaatggaa gagaaataca atatcttgtc ttcttccgag
    23641 gagcttactg agctttcaga tgaaatcaca cgcttattaa gtgatgatga aatcaatgca
    23701 aacagtctga tttataaagc gttacgcaat gcagaaaact tggctgaggt tgatagccaa
    23761 tatcagggca ttttagatat gcttaatgag gccctgattc agattcaaga agcaagctcc
    23821 gaagtggctc aattagccag taaaattgaa caagatccgg aattactaca ggagctggat
    23881 aatagaattg cacaaactat atcgttagca cgcaaacacc atattcaacc gaatgaatta
    23941 tggcaatatc acgcgacatt aaaagcagaa ctacaggaat tactggattt tgaagataat
    24001 gaagaacaac tcattcaaaa tgaaaaacaa gcttaccaag agtgtataac attagcagaa
    24061 gaaatttacc aaaaacgtct agatgccaca cataagctct ctgaacaagt aacaaaacaa
    24121 attaaacact tagcaatgga aaacggtgag ttctttattc atatagaaca taatcttgaa
    24181 aaaatgtctg caaatggtgc tgactatgtc gagtttaatt tacgcagcaa tttaggacaa
    24241 caaccccaac cactggcaaa aattgcttct ggtggtgagc tatctcgcat ttctctggca
    24301 gtacaagtgc ttaccgcaaa taaactttct acgccaacta ttatttttga tgaagttgat
    24361 gttgggatta gtggctctgc tgccactaca gtcggaaagc tactgcgtaa gctaggcgaa
    24421 aaatgccaag tattatgtgt aacccattta cctcaagtgg caagttacgg caaccagcag
    24481 tttaatgtac aaaaatatgt agaaaataat caaactgaaa cgcaaatgac attactcaca
    24541 gaagcagagc gtattcacgc cttggctcga ctattaggcg gaagcgaaat caccgaaacg
    24601 gttttagcta atgcaaaaga aatgctaaat ttagcgaaaa ataacgaata gccaaaaaga
    24661 aaaatcgcat caatgaatat tgatgcgatt atgaatttgg tggaggtaaa cgggatcgaa
    24721 ccgatgacct cttgcatgcc atgcaagcgc tctcccaact gagctatacc cccttaatac
    24781 aagcggaata atatgctttc cgcttgaaga tgtcaatggc tttaatcaag caaggtgttg
    24841 attgattaaa aactagctat tcgcctgaat aaactcaatc gctttttgta agcgagctaa
    24901 ggttctttct ttaccgacta atttggcggt gatatccatt gacggcgatt gcccacttcc
    24961 tgttaccgct aaacggaacg gcataccgac tttgcccata ccaatttcca gctcggcagc
    25021 ggtttggttc attgcctcgt ggatattttc caccgtccag tcattgcaag cggtcaattt
    25081 ttccaataat tttgcaagtg gagcaacggc ttcggctttg aagtttttag cagcagcttt
    25141 ttcgtcgtaa gccttaaatt cttgatagaa atagcggctg ctttcggcaa gctcttttaa
    25201 ggttttgcaa cgttcgccca gtacagggat aatttcttcc aattttggac cgcttgtgaa
    25261 atcaatgcct tgagtttgca tatgccattc aagatgtttt gccacataac ttggggcaag
    25321 actgcggata tagtgttggt tcaaccattg taatttttca gtgttaaatg cacttgccga
    25381 tttactgact gaatgaatgt cgaacagctc gatcatttcg tcacgagaga aaatctcttg
    25441 gtcgccgtgt ccccagccta aacgcacaag gtagttaatt aaggcttccg gtagatagcc
    25501 gtcatcacga tattgcatta cgctcaccgc accgtggcgt ttggagagtt tttgcccgtc
    25561 atcgccgttg atcattgaaa cgtgggcgta ggttgggatt ggtgctccta atgctttcaa
    25621 aatgttgatt tggcgtggtg tattgttgat atggtcttca ccccgcacaa cgtgagtaat
    25681 gcccatatcc cagtcgtcca ccaccacaca gaaattgtag gtcggcgagc cgtcagtacg
    25741 gcgaataatc aagtcatcta attcgctatt ggcgatttca attcgcccac gcaccgcatc
    25801 gtcaaatact accgagcctt cggtcgggtt tttgaaacgc acaacatgtg gttggctcgg
    25861 gtcgttttgc ggattgtgta agcagtgctg atcgtatttc gctttctctt tatttgcttc
    25921 ttgctctgca cgtacttcgt ctaaacgttc tttcgagcag tagcaacggt atgccgtgcc
    25981 ggcttctaac atttggtcga tcacttggtt atagcgatcg aaacgcttgg tttgaaagta
    26041 tgggccgtgt tcccacgcca aatccagcca ttccataccc tctaaaatag cggcggttgc
    26101 ctcaggggtt gagcgttcaa gatcggtatc ttcaatacgt aacacaaatt caccatcatt
    26161 atgcttagca tataaccaag agtagagcgc ggtcctcgcc ccacctacgt gcaagtagcc
    26221 agttgggcta ggtgcaaaac gggtacggac ttttacattc ggatctaagg ggaaaagggt
    26281 ttcaattttc attttatatt gcctaattga tgattcttaa gaaaaacttg tctattttac
    26341 tacgcttgag ggtgaatcat agtaaaaaat taaatttgcg gggtaaaaaa tcagcaaacg
    26401 gggtaaaaag aacaaaaagg gtttgacgaa acagcaaaaa tctctataat tcacttccac
    26461 aacagcgggc gattagctca gttgggagag cacctccctt acaaggaggg ggtcactggt
    26521 tcgagaccgg tatcgcccac cacttcaact taagtgtttc gttgttgtat cacaatctaa
    26581 ttttgaaaac gggcgattag ctcagttggg agagcacctc ccttacaagg agggggtcac
    26641 tggttcgaga ccggtatcgc ccaccacttc aacttaagtg tttcgttttc aaattccctt
    26701 tgattttaag tctcaagtgg gcgattagct cagttgggag agcacctccc ttacaaggag
    26761 ggggtcactg gttcgagacc ggtatcgccc accacttaag actaaaatca taaacttcaa
    26821 atggcgattt ttcgtatctg aagggcgatt agctcagttg ggagagcacc tcccttacaa
    26881 ggagggggtc actggttcga gaccggtatc gcccaccatc tatttagtat caaagcctaa
    26941 aacttatatc ataatctaat aaccccttta aagtcataac taaaaaggga aaataaattc
    27001 agatggcctg ttgcatctgc ataaatgcct ttctacgtgc agaaattaat ctttttctat
    27061 ctttaatttg cttaatttga cgcaggcgta atttccttgt cagtagggat ttctttttct
    27121 tcaattttct cataagaaga attctcctgt tttatttgac catctggtaa attttcttgt
    27181 tcttgcatct tttgctcttc aactcgttga taattaataa tactaccata ataacgccgt
    27241 atattttcaa catactgtaa tgcttcatat cctcgagcat agccgtattt tagattagca
    27301 taataacgtt tttccgcaag caatggcaga ttctttttaa catcaagcca attatccgga
    27361 tcaccaccaa gttgttttgt taatcgacga agatccaaca agtgccccaa tcccatatta
    27421 tacgctgcta ggctatacca aattctatct gcttgaggaa tagtttccgg catttgtctc
    27481 attagcatat gtaaatattc agatcccgct ttgatacttt gtgcagggtt agtcctatca
    27541 gaaattttca ttctatctgc cgtatctttt gtcagcatca taattcccct cactccggtt
    27601 ggagaagttg cattaggatc ccaatgagac tcctgatagg cgatagccgc cagcatttgc
    27661 cattctaatt cacctttatg tgcccgaaaa aggggttcat atttaggtaa aatagtttta
    27721 attgcattca aatagctctg aatatcaaca taatcaaact tagctaaatg attaaaatat
    27781 ttctcttcta ttcttgatat cagcccagtt tccatagaat aagacataaa atccagcagc
    27841 acagattgca gttcactata agaactattt gctaaatacc ataacactgg gttttcatca
    27901 gttaaatcaa accctacggc taaattagga ttaatatgct gtgcagcaga aatatcaacc
    27961 gacattgcaa ttgtatgtga aatttcacct tgtgcgactt ttaacaatag ctcttcttgt
    28021 gtaaatttat ccgagatctg ccattttagt tccggattat ccaccttaag ctgatttaat
    28081 attggaatta ccgcagaacc ggctggaata atcacatttt cccgcaaatc ggaaagtcga
    28141 tatggtctag cacttccctt tttataaaca agctgccaag aagccgaata ataggaagga
    28201 cctatctgaa attcatcgtt taattcagaa tggtaaagca gcccagcggc agcaatatca
    28261 acatcattat ttcttaaggc ctcaaacaat ttctcgctac tatcataagt tttaatatca
    28321 agattgacct ttaaatattg agcaaaggct gttgctaaat catattcaat gccacttttt
    28381 ccttcaggac caacaaagta agaaagtgga tggttgatca ttccaacctt taacgttttg
    28441 ctttgctgaa tttgtgtata atgatttgct tctgaatgaa tgattttttg ccaaggaaaa
    28501 atcatatccc aagcccacag taacaatgct acggcaataa aaaggcgagc aattaatcct
    28561 ttcaatttaa aatcctcatt atttcaagct aagcattaag cctatctgaa attacaaatt
    28621 aacggaataa tactttatag tttaatt
//
LOCUS       DANLZD010000012        28465 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.012, whole genome shotgun sequence.
ACCESSION   DANLZD010000012 DANLZD010000000
VERSION     DANLZD010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 28465)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28465)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28465
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.012"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..404
                     /locus_tag="PXE26_000367"
     CDS             <1..404
                     /locus_tag="PXE26_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS1595-like element ISMha4 family transposase"
                     /protein_id="HDL5592987.1"
                     /translation="GKTAVFGLLKRDGKVYTVVVPNTQFATLLPIIREKVKPDSIVYT
                     DFYRSYDVLDVSEFNHFRINHSTHFAENQNHINGIENFGSQAKRHLRKFNGIPKVHFE
                     LYLKECEWRFNHSDLKSQISFLKQLVKGSLG"
     gene            463..1393
                     /locus_tag="PXE26_000368"
                     /pseudo
     CDS             463..1393
                     /locus_tag="PXE26_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433453.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(1441..1956)
                     /locus_tag="PXE26_000369"
     CDS             complement(1441..1956)
                     /locus_tag="PXE26_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein disulfide oxidoreductase"
                     /protein_id="HDL5592988.1"
                     /translation="MQKKSLISRLLKNIFLYGSLFIIISLVVDWYRSPSAPAQFEQTV
                     HYDIQHQPKVIAQLSHEKPMLLYFWGSWCHYCQVVSPNIQQLANDGTEVLGVALKSGD
                     ENDVQAYLNENGYTFATLNDPSGDFSRGWNIQATPTILIIKDGKIAHHTTGYTSYLSL
                     KFRLWLADVLY"
     gene            complement(2022..2651)
                     /locus_tag="PXE26_000370"
     CDS             complement(2022..2651)
                     /locus_tag="PXE26_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5592989.1"
                     /translation="MALDFNSVGLDSVEAKGGYGIGLQIGQQLLGSGMDVNAETVARG
                     IYDVLNNNEPAIDINEVTAALQELGQRAEAAQAEAFKAIDAENKAFLEENKKANGVIV
                     TDSGLQYEILTEGTGEKPTATSTVRVHYTGSLIDGTVFDSSVKRGQPAEFPVNGVIRG
                     WTEALQLMPVGSKWRLTIPQELAYGERGAEASIPPFATLVFEVELLDIL"
     gene            complement(2799..3428)
                     /locus_tag="PXE26_000371"
     CDS             complement(2799..3428)
                     /locus_tag="PXE26_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HDL5592990.1"
                     /translation="MAVSATSFAQTTQPTAAEQMNAVKASVAEKATVAKEATKEKAAE
                     LKAGSAEKMAIAKAKTESFKDSAKNKMDAVKATTAEKTDVIKAKAASASDTMKVKAQE
                     AKAATAEKAATAHETLNSAKTATAEKAASMKAAATEKMSAVKKSQKVNINTANEEQLQ
                     SLTGIGEAKAKAIVEYRKKHGKIKNAAELANIPGIGDATIEKVAPYLTF"
     gene            complement(3602..4165)
                     /locus_tag="PXE26_000372"
     CDS             complement(3602..4165)
                     /locus_tag="PXE26_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5358 domain-containing protein"
                     /protein_id="HDL5592991.1"
                     /translation="MLRKIVLLSTGLLLAACSSNEPQQPEAFPGEFANADYVLSEENA
                     QKWVIASEQAKQCIYPNLTRIQQEHFSKEDSYIFSQYVFFYPLEEIIGEQYVKIIQND
                     EKSMGYAQYLFKKLKNNEAVEALPKKQCATLRTNAKNDLAVVKGQYQSGMIEETNSQE
                     GKSGDKVATNDNKFFFDIIKWGSMLLL"
     gene            4315..6912
                     /gene="mutS"
                     /locus_tag="PXE26_000373"
     CDS             4315..6912
                     /gene="mutS"
                     /locus_tag="PXE26_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HDL5592992.1"
                     /translation="MTQDFSTHTPMMQQYLQLKAQNPDILLFYRMGDFYELFYDDAKR
                     AAALLDISLTKRGQSAGEPIPMAGVPYHAVEGYLAKLVALGESVAICEQIGDPATSKG
                     PVERKVVRIVTPGTVSDEALLPERQDNLVAAVYEEKGTFAIATLDMTSGRFLISELAS
                     KEALSAELQRVQPAEILYAEDFSAASILTNYKGLRRRPVWEFELVTAIQLLNRQFGTQ
                     TLAGFGVEKAVVALCAAGCVLHYAQETQRTALPHINAIHLAQHSDTILLDAATRRNLE
                     LTQNLAGGTENTLAAVLDKCVTPMGSRLLKRWIHQPIRDCGKLQARQKAITALIQYER
                     MSDLQPLLQQVGDMERILARVALRTARPRDLTRLRTALAQLPEIAKNSQNLTASIDQL
                     LAQLADFSPLHDLLERAIIENPPQLIRDGGVIAEGYNAELDEWRQLSDGATQYLENLE
                     IRERESTGIDSLKIGFNAVHGYYIQISQGQAHKAPIHYVRRQTLKNAERYIIPELKTY
                     EDKVLKAKGASLALEKQLYDELFDVLMPRLGELQLAAMMLSELDVLTNLAERADSLGY
                     VCPSFSPMRMVNIKGGRHPVVEQVLTEPFIANPVFLNSQRHLLIVTGPNMGGKSTYMR
                     QIALITLMAYIGSFVPAESAEIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQ
                     ATENSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTGLPNQLKG
                     VANVHLDAREHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEI
                     SHQTKQANEHPQADLLFSDGFDLQKNEAIQPLVVENEVEKALKALQPDELTPRQALDE
                     LYRLKKLLG"
     gene            complement(6960..8414)
                     /locus_tag="PXE26_000374"
     CDS             complement(6960..8414)
                     /locus_tag="PXE26_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5592993.1"
                     /translation="MKKIVSTLLILTSNLAFAETTPAQLQEKMDNQRMQKNLHTLEKP
                     EPQAKPQAVNAQAHRQSISISSQQLLQQPELLNSAMLTALVTNHTENVQFLLPIYQQL
                     PASKQNSEVVQWAEAVNAKAKQNYSEAIKGYRQLLAKYPENQPIRMQLAVALFENREN
                     EAAEAQFYKLQADKLPQEIANAVNSYLEAIGKQDQWSFQGGLTYLNDPNINNAPNAGT
                     TYGNWTAPKKESAQGVGFHFEADKKWSWGNGFFHEFRLNGNGKYYWNNKKYNEYSLRE
                     SLGLGYQNAKQKITLLPFFEQMWYAGGSSQTESTKRYSNAGGVNARWQYWITPQWQSA
                     ISYEYAEQRYTRRQHLDGNYHFIAPSLYFYPNSRQYWFVGANFNRTSPRDLDDSFIRR
                     GVSIGWGQEWKNGLSTQLSASYARKQYRAPMPIFQITQRNSEYGVQASIWHRALHFKG
                     ITPRLTWQYNKVKSNHSFYSYDKNRVYIEFSHTF"
     gene            complement(8638..9276)
                     /locus_tag="PXE26_000375"
     CDS             complement(8638..9276)
                     /locus_tag="PXE26_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HDL5592994.1"
                     /translation="MRYTTEQIIEKLRQLKVVPVIALDKAEDILPLAKTLSENGLPVV
                     EITFRSEAAEEAIKLVQANYPEVLIAAGTVLTKEQVLTAKNAGADCIVTPGFNPTIVK
                     YCQVLGLPVTPGVNNPMAIEAALELGIQAVKFFPAEASGGVKMIKALLGPYGNLQIMP
                     TGGISPQNINDYLAIPNVVACGGSWFVEKSLIKEQKWEEIGKLTKEVVELVK"
     gene            complement(9364..10311)
                     /locus_tag="PXE26_000376"
     CDS             complement(9364..10311)
                     /locus_tag="PXE26_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HDL5592995.1"
                     /translation="MKKLAILGECMIELNGEPFGEMHQTYGGDSLNTATYLARVSSPE
                     QIEVRYISALGTDKLSQGMLAAWQVDNINTDFVLRDEHRQPGLYLIQLDKQGERTFLY
                     WRNQSAARYLLQHPGYPKALSALNEVDMVYLSGISLAILPENDRTLLIAQLRELKTQG
                     VKIAFDSNYRPKLWESVAAAQAHYAELLQLVDLALVTFDDEQLLWGDVNEQATFDRLT
                     QYGIQTIVVKQGSLGATVLQNGERTFVPTVAVEKVVDTTSAGDSFNAGFLNGYLLGKD
                     VVTCCQQGNAVAGIVIQHKGAIIAKSATTHLKSQFEQSI"
     gene            complement(10328..11173)
                     /locus_tag="PXE26_000377"
     CDS             complement(10328..11173)
                     /locus_tag="PXE26_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5592996.1"
                     /translation="MSIAQNHNFKDKVVVITGAGGVLCAYFAKEIAKTGAKVALLDIN
                     LEAAQNFASEIADEGYIAKAYQTNVLELESIKQARDEILKDFGTCDILINGAGGNNPK
                     ATTDNEFHDINLPENTKSFFELDKAGIEFVFNLNYLGTLLPTQVFAKDMLGKEGANII
                     NISSMNAFTPLTKIPAYSGAKSAISNFTQWLAVYFSKVGIRCNAIAPGFLVSNQNKAL
                     LFNADGTPTARANKILTNTPMGRFGQADELVGAILFLMDHHYSSFINGVVLPVDGGFS
                     AYSGV"
     gene            complement(11185..12456)
                     /locus_tag="PXE26_000378"
     CDS             complement(11185..12456)
                     /locus_tag="PXE26_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005668000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HDL5592997.1"
                     /translation="MLWLFLGSLFLFLFLGVPVALSMLLSASFMLWKMDMFDAQLITE
                     NFVMGTNNFPLMAIPFFMLTGEIMKHGGISERIINFAMSMVGHIKGGLGYVVIISGLI
                     FAGLSGSAVADTAALGAILIPMMVARKYDVARSTGLICAAGIISVVIPPSIPMIVYGI
                     TAGASITKLFMGGMVPGFLMVLGLWLVWKFLYRNEEQTVEPKKTGKERWAAFKSAFLP
                     LLLPIIIIVGLRGGIFTPTEAGVVAAIYAAIISIILKGLTLDKIQDVFLGTIKTTAMV
                     MFVAAAAMISAFAVTVAQIPMELVEFIKGITDSPTVLMFVIMIFLLLVGCVMDLIPAV
                     LIFVPVLLPLLRAYNIDIAYFGIMMVINLSIGLITPPVGTVLYVGSGIAKIGIARLTK
                     GIYPFLLVYAAILFLLILFPEIIIVPMNWLS"
     gene            complement(12459..12938)
                     /locus_tag="PXE26_000379"
     CDS             complement(12459..12938)
                     /locus_tag="PXE26_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HDL5592998.1"
                     /translation="MQISTALDRTLKLLAIIALSTMIILVFFNAVLRYFFDSGIAWSE
                     EFARICFVYMIFLGIILVAKERGHLTVDIVVSALPAKVQMYLLFFADILVLVALSFIT
                     YGAYQLMLLTYTQKMPATEISSAFLYFAAVISSISYFAIVFTNLWKHIRLAFIKEEK"
     gene            complement(12999..13982)
                     /locus_tag="PXE26_000380"
     CDS             complement(12999..13982)
                     /locus_tag="PXE26_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL5592999.1"
                     /translation="MKLKTFTKALLISSLMFTGSAFAKTIIKIGHYNSDVHPSNIALQ
                     EYFKKTIEEKTEGRYEIRIFPNNQLGGEDQIVNGLRNGTIEGGITGLLLQNVDPIFGV
                     WEWPYLFKDNAEAKKVLESPIAQEIGEKMEKYGIKLLAYGMNGFRVISSNKKVENFDG
                     FKGLRLRVPLNSLFVDWAKAMHINPQSMPLSEVFTALEQKVIDGQENPYMLIKDSGLY
                     EVQKYIIESNHIFSPGLLQLSLKTWNKMSKEDQTIFLEAAKLYQEKEWELAMKMEQDV
                     KDFFHKNGKEVIVPSEQFKADMLKASETLYQNFYQKYDWAKDVISKIHAAK"
     gene            complement(14011..15036)
                     /locus_tag="PXE26_000381"
     CDS             complement(14011..15036)
                     /locus_tag="PXE26_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HDL5593000.1"
                     /translation="MEKPLKSVCLVEPNKVGIQTVSYPVKGENDVLIKVEGMGICGSD
                     IGAFRGTNPLVTYPRILGHEIVGTVIESGKGMPNNINVGDRVIIEPYIYCGHCYPCSI
                     GRTNCCESLKVLGVHIDGAMQEVVRHPAHMIIKTPDMPIHELALAEPLTISLHAIHRT
                     KVKAGEHVAIIGAGAIGLMAALVAKAYGATPILIDILDKRLDYAKSIGIPHTINPTKE
                     NDLEAIKSITNGRMAEVVIEASGANVAVQNTLKYTSFAGRIALTGWPKTETPLPTNLI
                     TFKELNIYGARTSKGAFEEALELLASRRIEPKDIISKVITFDEIPHYIEELSANPDDY
                     LKIIAVF"
     gene            15200..15961
                     /locus_tag="PXE26_000382"
     CDS             15200..15961
                     /locus_tag="PXE26_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HDL5593001.1"
                     /translation="MQNSSRTYTKIGKILKEEIAQGKYRVGDKLPTERDISERFEVSR
                     TIVREAIVMLEVEKLIEVKKGSGVYVIRVPELFPEDFPEEKDNELRDVGPFELLQARQ
                     LLESSIAEFAAQQATKQDIQVLRNILESEKKLLLEKMDDYSADKEFHLALAHMTGNDV
                     LIQLQEQLWRYRFNSAMWAQLHSRILQHDHHHLWIEDHERILNAIQRKNPALARKAMW
                     QHLENVKTKLLELSDVEDPKFDGYLFNVNPVVVGI"
     gene            15991..17175
                     /gene="uxuA"
                     /locus_tag="PXE26_000383"
     CDS             15991..17175
                     /gene="uxuA"
                     /locus_tag="PXE26_000383"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HDL5593002.1"
                     /translation="MEQAWRWYGPNDPVSLDDVRQAGATGIVTALHHIPNGQVWSVEE
                     INKRKALLAEKGLVWSVVESVPVHEEIKTQTGNYQQWIDNYKQTLRNLASCGIDTVCY
                     NFMPVLDWTRTDLEYEMPDGSKALRFDQVAFAAFELYILKRPGAEATYSSAEQAEAKA
                     YFEQMSDADIAKLTKNIIAGLPGSEEGYTLEEFQAQLDRYQGLSAEKFRTHLAYFLNE
                     IVPVAQEVGIRMAIHPDDPPRPILGLPRIVSTIEDMQWFVETQPLAANGFTFCTGSYG
                     VLAENDLVKMAEQFADRIYFAHLRATQREENPQSFHEADHLAGDVDMFGVVKALLTEE
                     YRRKANGDHRLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLRGLAEFRGLELALKKVYF
                     ND"
     gene            17226..18095
                     /locus_tag="PXE26_000384"
     CDS             17226..18095
                     /locus_tag="PXE26_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5593003.1"
                     /translation="MFKKYFGEIILFLVTFIAAAGWFFSKHALVGLPPIGFMGGRFIL
                     ASLILLPFSYRELYRLDKVQVKYSVITGLTYGIYTIFWVLGLAFSTVFGEGAFLVSLA
                     MLIAPLLSWLIFKHTPPKIFWLALPIALSGLYFLSAEKGIFHFSLGSTIFLVSSVFGA
                     LYFVLNNQYAKQVSLFPLITIQLAIVGAVCSLYSYFMESWHFPILTEVWLWFAASVLI
                     ATNLRFLMQTLGQKYCHIGTSALIMLLEPVWTLLLSVMLLGEQLSATKWLGCSLILIA
                     LIIYRLPILRLKK"
     gene            18263..18577
                     /gene="rsfS"
                     /locus_tag="PXE26_000385"
     CDS             18263..18577
                     /gene="rsfS"
                     /locus_tag="PXE26_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HDL5593004.1"
                     /translation="MEQNLVEFLTKTLDDLKAQDILAIDVKGKSSITDTMILATGTSS
                     RHVASTAERLITEAKQAGFEVFGDEGKAVADWIVVDFGKAMVHLLQSDSREMYQLEKL
                     WA"
     gene            18654..19121
                     /gene="rlmH"
                     /locus_tag="PXE26_000386"
     CDS             18654..19121
                     /gene="rlmH"
                     /locus_tag="PXE26_000386"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010618862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HDL5593005.1"
                     /translation="MKIQLIAVGTKMPAWVTTGFEEYQRRFPKEMPFELVEIPAGKRG
                     KNADTKRILELEGKAMLAAAGKAKIVTLDIPGKAWTTEQLATQLEGWKNDGRDVALLI
                     GGPEGLSPECKAAAEQSWSLSPLTLPHPLVRVVVAESLYRAWSVTINHPYHRE"
     gene            19145..21094
                     /gene="mrdA"
                     /locus_tag="PXE26_000387"
     CDS             19145..21094
                     /gene="mrdA"
                     /locus_tag="PXE26_000387"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDL5593006.1"
                     /translation="MFGKLAKFTASNQREKVRDGQAESNLYARRALVAFLGVLALSGV
                     LLTNLYHLQVVNYEDYQTRSNGNRIKLLPVPPARGLIYDRNGKVLAENLTYFGLFIVP
                     EKTENIEQTLTELKDIVGLTDEDIENYHKEKKRSSRYTPIMLKGNLNEAQMARFAVNQ
                     YRFPSLDVQAYYKRNYPYGELLTHIIGYVAKINENDKKKLQEAGKFGNYAGSHDMGKL
                     GIEKFYEDQLHGVTGFEEVEINNRGKVIRKLRDQAGVAGSSIRLSIDVELQQYVMSLI
                     AKHKGAVVVLDPRDSSILAMVSNPSYDNNLFVGGISGQDYKALLDDPTRPLYSRTTQG
                     TYPPASTIKPFMAVAGLEEGMITPSTTISDPGYWILPGTTQRYRDWKRSGHGATNVNK
                     AITESSDTFFYQLAYKMGIDKMSDWMKKFGFGVKTGIDIFEESAGVMPTREWKQKRYK
                     KPWVQGDTIPVGIGQGYWISTPLQLAKATAVLINNGRVNTPHLMLEVQSSNSVTPYQD
                     PLLYEDIKGVPDVYWNLAKQGMYNVNHAANGTARKVFAGAFYHSAGKTGTAQVFNLNG
                     KNYDKNAIKKELHDHAWFIGYAPYEQPKIVVALILENAGGGGSAAAPVARQIMDYALR
                     KGIGEQPDSQNSEQNKPLVTEEHHE"
     gene            21087..22214
                     /gene="rodA"
                     /locus_tag="PXE26_000388"
     CDS             21087..22214
                     /gene="rodA"
                     /locus_tag="PXE26_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HDL5593007.1"
                     /translation="MNSGFKKLFWKIFSLDLLLLSGLLAITGYGLLVLYSASGANERM
                     FTSRLIQVSLGLGLMLIMAMVPPRFYQKVSPYLYIFCLILLILVDLVGETSKGAQRWL
                     NLGFVRFQPSEIAKLAVPLMVATYLGKRPLPPSFKDTFIALAIIIVPTLLVAIQPDLG
                     TSILVCSAGIFVLFLAGLSWKLIGAGVVFLAGFIPIMWFFLMHDYQKTRVMTLIDPNK
                     DPLGAGYHIIQSKIAIGSGGINGKGWMEGTQSQLEFLPEPHTDFIFAVLSEEHGMIGV
                     LILLAIYLFIIARGLVIGTKSDSAFGRILSGGTALLFFVYVFVNIGMVSGILPVVGVP
                     LPLFSYGGTSYVTLMAAFGLMMSTYVHRKRVGSNNPYDKLK"
     gene            22306..22965
                     /locus_tag="PXE26_000389"
     CDS             22306..22965
                     /locus_tag="PXE26_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HDL5593008.1"
                     /translation="MRLGKIVTLLLAGFLTFSSLNSLAATKNTKAKSSILAKKQATSK
                     AIKKVGISKVKKKEVVAKATKKKTISTVTTKPIKSTKKLARKVVKKTVTAKKKLVKKQ
                     HKPLVKKHFQTGVASYYANYFNGRRTANGETFNNAKMTAAHRTLPFGTLIEVTNLRNG
                     RSVVVRVNDRGPYAHARVLDLSSAAAKKIGMHHSGTARVKIAIVDKSKLGSTNQFYVM
                     N"
     gene            22979..24157
                     /locus_tag="PXE26_000390"
     CDS             22979..24157
                     /locus_tag="PXE26_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HDL5593009.1"
                     /translation="MKKTLVKAMSVVGFAVSSIAYADLNTNFNLSAPQINAQTYILMD
                     YNSGEVLVSLNPDQRQYPASLTKMMTSYVVGEALKSGKVQNSDMVIVTENSWAQKFPG
                     SSLMFLDLNSKVSVGELMKGLIIVSGNDASVALAEHVSGSQAAFINEMNKYAQQFGLK
                     NTHFTTVHGLDDPEQYSSARDMAIIGSHIIRDQPEEYKIYAEKEFQYNIKKPQPNRNG
                     LLWDKTIQVDGMKTGHTDKAGYNLVASAINPNTRLISVVMGVPTYKGREVESKKLLQW
                     GFANFETIKSIPAAQSVAEQSVYYGEVNKVQLGSVQDSFVTIPKGRSADLKARYELEK
                     KNLEAPLAKGQVVGKMIYQLDGKDVASTNLQVLQDVPEAGIFGKAWDWIALTVKSLFD
                     "
     gene            24325..24624
                     /locus_tag="PXE26_000391"
     CDS             24325..24624
                     /locus_tag="PXE26_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HDL5593010.1"
                     /translation="MSQPKAINLQDLPQAKLKDLLEFPCHFTFKVVGANREDLVDDVV
                     VVTQKYAKGDYNPRQQKSSKGTYNSVSIDIVAENIEQVETLYTELAKINGVRMVL"
     gene            24686..25339
                     /gene="lipB"
                     /locus_tag="PXE26_000392"
     CDS             24686..25339
                     /gene="lipB"
                     /locus_tag="PXE26_000392"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HDL5593011.1"
                     /translation="MKLIIRQLGIQPYEEIWHQMQSFTDSRDGNTDDEIWLVQHPAVF
                     TQGSAGKPEHLLNPTNIPVVQSDRGGQITYHGEGQQIMYVLIDIKRLKSLGKEVSVRD
                     LVTALEQTVVQTLAEYGIESYPKADAPGVYVDGKKICSLGLRIRKGCSFHGLALNINM
                     DLTPFQNINPCGYAGLEMCQLSELVHRPDLRCEEVAPKLVAHFSTILGYNNQQIINN"
     gene            25354..26361
                     /gene="lipA"
                     /locus_tag="PXE26_000393"
     CDS             25354..26361
                     /gene="lipA"
                     /locus_tag="PXE26_000393"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HDL5593012.1"
                     /translation="MATSTAQTTATATVKKMSPFKMEKGVKYRDAAKTSVIQVRNIDP
                     DQELLKKPEWMKIKLPANSAKIDSIKNGMRRHGLHSVCEEASCPNLHECFNHGTATFM
                     IMGAICTRRCPFCDVAHGKPLPLDPDEPRKVAETVQDMKLKYVVITSVDRDDLPDRGA
                     AHFSATVREIKALNPHCKVEILVPDFRGRVEQAVAILKENPPDVFNHNLENVPRLYRE
                     VRPGADYKWSLELLKIFKQEFPHIPTKSGLMVGLGETNEEILEVMQDLRDHGVTMLTI
                     GQYLQPSRHHLKVERYVPPAEFDMFREEAEKMGFEHAACGPFVRSSYHADLQAKGELV
                     K"
     gene            26548..27651
                     /locus_tag="PXE26_000394"
     CDS             26548..27651
                     /locus_tag="PXE26_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5593013.1"
                     /translation="MKKLLLNSVFAATLLAFGATANAEIKTITDVLGREVKVDVPAKR
                     VALTFYYPDYIAVTGVENFDKVVGISREFWEKFNPGSWALFAEKMPNLKNIADLGYVN
                     SGTFSTEKTIALKPDVLVLPEIQYQALASEISRIEQAGIPVVVDFNKQTIENHTKSVR
                     VFGQLTGTEERAEKIAKEYEEGIADIQSCIDNAKVSKPKIYAEFGNKGPKEHSFTFGK
                     NMWGAIAETVRGDNISAPFVENWGQINPEQVLVSKPDVIMISGTELGNDTNPEIMSMG
                     INIEEADAQKRLKGFIERTGWKELPAVKSGRVYGLYHTASRSISDLASAQFMAKALYP
                     ELFKDIDPEKTYLDFHNNYLPITPKGTFFMQLK"
     gene            complement(27742..>28465)
                     /locus_tag="PXE26_000395"
     CDS             complement(27742..>28465)
                     /locus_tag="PXE26_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5593014.1"
                     /translation="VVADKINLHFEQGKIYTLLGPNGAGKSSLLKTLFGEIAHQGTID
                     FDGNKLTSSHLHSWRKEIGYMPQDTQVEASLSALEVILLGQLDSLNMYISDELLNEAV
                     DIMDKLGISHLAHQDIMRLSGGQRQMVMFAQVLLRKPHILLLDEPVSALDMYHQINLL
                     EYVNAYTRANNLITIMVLHDLSLAAQFSDSVMLLSEGKFKHKAELVICWNAILFRDSI
                     MSILRFYMMETARRLSARFANV"
BASE COUNT         8139 a         5599 c         6291 g         8436 t
ORIGIN      
        1 caggcaaaac cgccgtgttc gggcttttaa agcgggacgg aaaggtttat accgtggtag
       61 taccaaacac gcaatttgcc acacttttgc cgattattcg ggaaaaggtg aaacccgata
      121 gtattgttta caccgatttc tatcgaagtt atgatgtgct tgatgtgagt gaatttaacc
      181 attttcgcat taatcacagc acacacttcg ctgaaaatca aaatcacatt aatggaattg
      241 agaattttgg gagccaagca aaacgccatt tgcgtaagtt taacggcatt cccaaagtgc
      301 attttgagct gtatttgaaa gaatgcgaat ggcgttttaa tcacagtgac ttaaaatctc
      361 aaatatcctt tttaaaacaa ttggttaagg gtagtttagg ttagttatct aggacagccc
      421 cttttctttt atttaaaaga gaaagggcta gataacgccc aaatcgcttt tttcctttca
      481 ttgctgttgt tttgtaatca ggcattggca attttagccg gcatttgggg ggatcgctac
      541 ggcctggcaa aaatgatgtt attgggctgt ttattagatg tggttgccta tatgctgttt
      601 ttagcagcgg ataattacct cattttattg ttggcaacca cttgctttgg gttggggagt
      661 tgcttattcg gcactaatgc cagagcctgt ttactggcga ttgccggcga tgaatatgct
      721 gctaaaaccc gtttacaagg caaatatcta aaagtcacca gtatgtcttc aatgctcgcc
      781 ccgctgatta ttattccgtt tattaggttt gagatgattg aaacgctgat ttggatctgc
      841 tttattttgg aagccggctt gtttgcgttt atggtcaagc cgttttattc ggtggaaggc
      901 gtgaatggcg gcgtgaaatt tcgtttcgca caaattaagg aaatcatcaa caaagagttt
      961 ttgttcgctc acttaatgct atttgtgccg ctgagtgatt tttccgtatt tattcgacaa
     1021 tgtcctgcac gcaccggagc attcgccgat tgcgttattc atcaacggtg ttttaaccgt
     1081 cagtttgcaa tcgacttttt ctcgtaaaat caacctcacc aaacagcaat taatttggat
     1141 ttcgccgtta ttagcggtgg cgattattgc cccttggttt attgcggtaa aagtcgcaac
     1201 tctgaccgct gcctatattt acaccgtgat ttttacggtg gtggaagtgt acgccctcac
     1261 agcaatggca aatttactgg tgaaattcga caacggcaaa aaccgaggct ttatttttgg
     1321 ctcatcgagg ctgattttat cgatcaccac aatgatgaca atgaatttag taccgcttgt
     1381 ctttttggtg taaacaagcg gtcggattta gtggattttt ttgcaaatga aaggaatcgt
     1441 ttaatacaac acgtctgcca gccatagtct gaattttaag ctcaaatagc tagtgtagcc
     1501 ggtggtgtgg tgggcgattt taccgtcttt gataatcaag atggttgggg tggcttgaat
     1561 gttccaacct cgagagaaat caccgcttgg gtcattcaaa gtagcgaaag tgtagccatt
     1621 ttcattgaga taggcttgta cgtcattttc atcgccggat ttcagggcaa cacctaaaac
     1681 ttccgtgccg tcattcgcta attgttggat atttggcgaa accacttggc aatagtggca
     1741 ccaacttccc caaaaataga gtagcatcgg cttctcgtgg cttaattggg cgattacttt
     1801 cggctggtgt tgaatatcat aatgcacggt ttgctcaaat tgtgccggag cggagggcga
     1861 gcgataccaa tcaaccacca ggctaataat gataaacagg ctgccgtaga ggaaaatatt
     1921 tttaagtaag cgagatatga gtgatttttt ctgcataata tagttatctt aaatagcaaa
     1981 aacctgtgaa atgcctccac aggtttttta tttgagtttg attagagaat atcaagcaat
     2041 tccacttcaa acactaaggt cgcaaatggt ggaattgatg cttctgcacc acgttcgccg
     2101 taggctaatt cttgtggaat ggttaaacgc cattttgagc caaccggcat taattgcaat
     2161 gcttctgtcc aaccacgaat tactccgttt accgggaatt ctgccggctg accgcgtttt
     2221 accgagctgt caaacacggt gccgtcaatt aatgaaccgg tgtagtgaac acgcacggtt
     2281 gaagtcgcag tcggtttttc gcctgtgcct tcggttaaaa tttcatattg taaaccgctg
     2341 tcggtaacga ttacaccgtt tgctttttta ttctcttcca agaacgcttt gttttcggca
     2401 tcaatcgctt tgaatgcttc tgcttgagcc gcttccgcac gctgacctaa ttcttgtaat
     2461 gcagcggtca cttcattgat gtcgattgcc ggctcattgt tgtttaacac atcataaata
     2521 ccacgggcaa cggtttctgc gtttacgtcc attccgctgc ctaaaagttg ctgaccaatt
     2581 tgtaaaccga tgccgtaacc gccttttgct tctactgaat ctaatccaac tgaattgaaa
     2641 tctaatgcca ttttctgttc cttttgagtt tattgaatac tgtattgaaa gaaatacgat
     2701 tcacttaatg ggggtgaaat ttaagaatac aaggtgtgaa atgaacaagc ggttattttt
     2761 ctgcaaaatt ttgcaacaaa ataaccgctt gcagaacatt agaaagttaa atatggagca
     2821 actttctcaa tggttgcatc gccaatgccg ggaatgttcg ccagttctgc tgcatttttg
     2881 attttaccgt gttttttgcg gtattctaca atcgctttgg cttttgcttc accaatgccg
     2941 gtaagcgatt gtaattgctc ttcgttggca gtgttgatat tcactttttg tgattttttc
     3001 actgctgaca ttttttctgt tgcagctgct ttcattgagg ccgctttttc agcggttgcg
     3061 gttttggctg aatttaaggt ttcatgagca gttgcagctt tctctgcggt ggcggctttt
     3121 gcttcctgag ctttcacttt cattgtgtcg cttgcagatg cggctttcgc tttaatcacg
     3181 tccgtttttt ctgctgtggt ggcttttact gcgtccattt tgtttttagc ggaatcttta
     3241 aatgattcgg ttttggcttt tgctatcgcc attttttccg cagaaccggc ttttaactcc
     3301 gctgctttct cttttgttgc ttctttagcc acagttgctt tttcggcaac agaggcttta
     3361 actgcgttca tttgttcagc cgcagtaggt tgagtggttt gtgcaaatga agtagctgaa
     3421 acagccattg ccacgcccaa tgctaataat gtttttaatg cttttattga aaatccttaa
     3481 atataaaaga gggaaaataa ttgaaaaaaa ctgtatttta agactgaggc tttagataaa
     3541 agttcaatcg gtaggtataa atggctcggt tgtggttaaa acaaccgagt attgaggctc
     3601 actagagaag taacatactg ccccatttga taatatcgaa gaagaattta ttatcattgg
     3661 tggcaacttt atcgcctgat ttcccttctt ggctattggt ttcttcgatc ataccgcttt
     3721 gatactgccc ttttaccact gccaaatcat tttttgcatt ggtgcgtaag gtcgcacatt
     3781 gttttttcgg taacgcttca accgcttcgt tatttttcag ttttttgaat aaatattgag
     3841 cgtaacccat tgatttttca tcattttgaa tgatttttac atactgctcc ccgataatct
     3901 cttcaagcgg atagaaaaat acatattgtg agaaaatata agaatcttct ttggaaaaat
     3961 gctcttgctg aatacgggtt aaattggggt agatacactg ttttgcctgt tcgctggcaa
     4021 ttacccattt ttgagcattt tcttccgaaa gcacataatc ggcattggca aattcgcccg
     4081 ggaatgcttc cggttgttgc ggttcattgc tgctacaagc cgccaataat aagcctgtag
     4141 aaagtagcac tatttttctt aacattctga cctctgtttt aaaaatttgg tgcattgtaa
     4201 caaaaaaaca gcggctgacc attgcaaatt ttcagcgaaa aatgaccgct tgtttttatc
     4261 ccttggctga atctgttaaa ctatcagcaa tgatttctca caataaatag actgatgaca
     4321 caagatttct ccacccatac gccaatgatg caacaatatt tgcaactcaa agctcaaaat
     4381 ccggacatac tattgtttta ccgaatgggg gatttttatg agctgtttta tgatgatgcg
     4441 aaacgagcgg cagcattgtt ggatatttcg ctcaccaagc gagggcaatc tgccggtgag
     4501 ccgattccga tggcgggtgt gccttatcac gcagtggagg ggtatttggc gaaattggtg
     4561 gcgttggggg aatcggtagc aatttgtgaa cagattggcg acccagcaac ctcaaaaggg
     4621 ccggtagaac gcaaagtggt acggattgtt acgccgggaa cagttagcga tgaggcattg
     4681 ttacccgaac gccaagataa cttggtggcg gcagtttacg aagaaaaagg cacatttgcg
     4741 attgctacgc tagatatgac ctccgggcgg tttttaatca gtgaacttgc tagcaaagag
     4801 gctctatccg ccgagttaca acgtgtacaa ccggcagaaa ttctgtatgc ggaagatttt
     4861 tccgctgcct caattttaac gaattacaaa gggttacgcc gccgtccggt gtgggaattt
     4921 gagctggtaa cggcgattca gctgctaaat cgccaattcg gcacgcaaac acttgccgga
     4981 tttggggtgg aaaaagcggt ggtggcactt tgtgctgccg gctgtgtctt gcattatgcc
     5041 caagaaacgc aacgcaccgc tttaccgcac attaacgcaa ttcatttggc acaacatagc
     5101 gatactattt tgctcgatgc agctactcgt cgcaatttag agctgaccca aaacttagcg
     5161 ggtggcacgg aaaacacgct ggcggcggtg ttagataaat gtgtgacccc aatggggagc
     5221 cgtctgctca agcgttggat tcatcagccg attcgagatt gtggtaaatt acaagcccga
     5281 caaaaggcga taacagcatt gatacaatat gagcgaatgt cggatttaca gccgttatta
     5341 caacaagtcg gcgatatgga gcggattctc gcccgagtgg cgttgcgtac ggctcgccct
     5401 cgtgacctca cccgactacg cactgcattg gctcagttac cggaaattgc aaaaaattca
     5461 caaaatctga ccgctagtat cgatcagctt ttggctcaac tggcggattt cagcccgtta
     5521 cacgatttgc tggagcgggc gattatcgaa aacccaccac aactcattcg tgatggtggg
     5581 gtgattgcag aaggttataa tgccgagctt gacgaatggc ggcaactttc ggacggggca
     5641 acgcaatatc tggaaaattt ggagatcaga gaacgtgaaa gcaccggcat tgattcgctg
     5701 aaaatcggct ttaatgcggt tcacggctat tacattcaga tcagccaagg gcaagcacac
     5761 aaagccccga ttcactatgt tcgccgccaa acgctcaaaa atgcggagcg gtatattatc
     5821 cctgagctga aaacttacga agacaaagtg ctgaaagcaa aaggggcatc gcttgccctt
     5881 gaaaaacagc tttatgatga actgtttgat gtgttaatgc ctcgcttagg cgaattgcaa
     5941 ttagcggcga tgatgctgtc tgaacttgat gtcttaacca accttgccga gcgagctgat
     6001 agtttaggct atgtttgccc gagctttagc ccgatgcgaa tggtgaatat taaaggcggc
     6061 agacacccgg tggtggagca ggttttaacc gagccgttta ttgccaatcc ggtgttttta
     6121 aattcccaac ggcatttatt gattgtgacc ggcccgaata tgggcggtaa aagcacctat
     6181 atgcggcaaa ttgccctcat tacattgatg gcgtatatcg gcagttttgt gccggcagaa
     6241 agtgcggaaa tcggcccgat tgaccgtatt ttcacccgaa ttggggcaag cgatgattta
     6301 gcttcagggc gttcaacctt tatggtggaa atgaccgaaa tggcgaatat tctgcatcaa
     6361 gccaccgaaa acagccttgt gctgattgat gaaatcgggc gaggcacttc tacctatgac
     6421 ggcttatcac tggcgtgggc gtgtgccgaa tggctggcga agaaaaccca gtcactcact
     6481 ttgtttgcaa cccactattt tgaacttacc ggcttgccga atcagctcaa aggggtggca
     6541 aatgtgcatt tagacgcgcg tgaacatcaa gacagtattg tgtttatgca ctcggtgcaa
     6601 gagggggccg ccagcaaaag ttacggcttg gcggtggcag ccttggcggg tgtgccaaag
     6661 caagtgattc aactggcaaa gcagcgtttg gcacatttgg aggaaatttc ccaccaaacc
     6721 aaacaagcaa acgaacatcc acaggcggat ttgttgtttt ccgatggttt tgatttgcaa
     6781 aaaaatgaag caattcaacc gcttgtagta gaaaatgaag ttgaaaaagc cctgaaagcc
     6841 cttcagcctg atgaacttac cccaagacag gctttggacg agttgtatcg cttgaaaaaa
     6901 ttgttggggt aaattgaaaa aataactaag aaatcgcccc gtttaagggg cgtttttgtt
     6961 tagaacgtat gtgaaaactc aatatagaca cggtttttgt cataactata gaagctatga
     7021 ttgcttttta ccttgttata ttgccacgtt aagcgagggg taataccctt aaaatgcaag
     7081 gctctgtgcc agatgctggc ttgcacacca tattcactgt tacgttgtgt aatttggaaa
     7141 atcggcattg gggctcggta ttgtttgcgg gcgtagctgg cacttaattg ggttgaaagc
     7201 ccgtttttcc actcttgtcc ccaaccaata gaaacacctc ggcgaataaa gctatcatct
     7261 aaatcacggg ggctggtgcg gttaaaattc gcccccacaa accaatattg ccggctgtta
     7321 gggtaaaaat agaggctcgg ggcaataaaa tgataattgc cgtctaaatg ttggcggcga
     7381 gtgtaacgct gttccgcata ttcgtagctg attgcagatt gccactgtgg agtaatccaa
     7441 tattgccagc gggcattcac accgcctgcg ttggagtagc gtttggtgct ttcggtttgg
     7501 cttgagccac cggcatacca catctgctca aaaaacggca acaaggtgat tttttgtttt
     7561 gcattttgat aacccaagcc gaggctttct ctgagcgaat attcgttata ttttttgtta
     7621 ttccagtaat atttgccgtt tccgtttaaa cgaaactcgt ggaagaaacc attgccccaa
     7681 gaccactttt tatccgcctc aaagtgaaag ccgacccctt gggcggattc ttttttcggt
     7741 gcagtccagt tgccataggt cgtgcctgca tttggagcat tgttgatatt cgggtcattc
     7801 aaataggtta agccgccttg aaaactccat tgatcttgct tgccaatcgc ctccaaatag
     7861 ctattgaccg catttgcaat ttcttgcggt aatttgtccg cttgtaactt ataaaattga
     7921 gcctctgcgg cttcattttc ccgattttca aacaatgcaa ccgctaattg catacggatt
     7981 ggctgatttt cagggtattt tgccagtagc tgacggtagc cttttattgc ctctgaataa
     8041 ttttgttttg ctttggcatt aactgcctcc gcccattgta caacttcgct gttttgttta
     8101 ctggcgggta attgttgata aataggcagt aagaattgaa cattctcagt gtggttagtg
     8161 accaacgcag ttagcattgc cgagttgagc aactcaggct gttgaagcag ctgttggctt
     8221 gaaatagaga tcgattgccg gtgagcctgt gcattaaccg cttgtggttt ggcttgaggt
     8281 tcaggctttt ctaatgtatg taggtttttc tgcattcgct ggttatccat tttttcttga
     8341 agttgagccg gtgtggtttc cgcaaatgcc aggtttgagg taaggattaa aagcgttgag
     8401 actatttttt tcataaagct atcttttatt tgaatagaaa aggctatttt tcaatagcct
     8461 ttagtgaaga gttttgaggt tgttttgcta tatttttcat taagttaaat atatagcttt
     8521 aaatatacct actatatgct actaaataaa gtatgcaata tttgttatgc tttgtaaata
     8581 agaggaaaga gatccatttt gggtagaaaa tagctcattg cttggaactt taaatggtta
     8641 tttcaccaat tcaaccactt ccttcgtcaa tttcccaatc tcctcccact tctgttcctt
     8701 aatcagggat ttctccacaa accaagagcc gccgcaggcg actacgttgg gaatggcgag
     8761 gtagtcgttg atgttttgtg gcgagatgcc gccggtcggc ataatctgta agttgccgta
     8821 agggccgagc agggctttaa tcattttcac gccgccactg gcttcggcag ggaaaaattt
     8881 aactgcttgt atgccaagtt cgagggcggc ttcaatcgcc atcgggttgt tcacacccgg
     8941 tgtaacaggc aaacctaaca cttggcaata cttaacgata gtcggattaa aacccggagt
     9001 cacaatgcaa tccgccccag cgtttttggc agttaagact tgctctttgg tcagcactgt
     9061 gcctgctgca atcaatactt ccggatagtt ggcttgcact aatttaattg cctcttcagc
     9121 tgcttccgag cggaaagtga tttccaccac cggcaaaccg ttttcggaaa gggttttcgc
     9181 cagcggtaaa atatcttctg ctttatccaa agcaatcacg ggaacaactt tcagttgtct
     9241 taatttttca atgatttgtt cggtggtgta acgcatttct agcctcatta tgttgtattg
     9301 caagcggtcg cttttgtaaa aaattttgca aatttaaccg cttgtcgttg tgctattgtt
     9361 ggtctaaatg gattgttcaa actgcgattt caaatgagta gtggcggatt tggcaataat
     9421 cgcccctttg tgctgaatga cgataccggc aacggcattt ccttgttggc aacaggtaac
     9481 gacatcttta cccaataagt aaccgttaag gaagccggca ttaaaggaat cgccggcgga
     9541 agtggtatcg accaccttct ctaccgcaac agttggcaca aaagtacgct ccccgttttg
     9601 caacaccgtt gcccccagag agccttgttt caccacaatg gtctgaatgc catattgagt
     9661 gagacggtca aaggtggctt gctcattcac atcgccccaa agcagttgct cgtcatcaaa
     9721 ggtcacgaga gctaaatcga ctaattgcaa cagctcggca tagtgagctt gggcagcagc
     9781 cacactttcc cacagtttcg gccggtaatt gctgtcaaag gcgattttca ccccttgtgt
     9841 tttgagctca cgcaactgtg caatcagcaa agtgcggtcg ttttccggca agatggcaag
     9901 gctgataccg ctcaagtaaa ccatatctac ctcgtttagt gccgagagtg ctttgggata
     9961 gccggggtgt tgcaacaaat aacgggcggc agattgattt cgccaataga ggaacgttcg
    10021 ctcgccctgt ttatccaact gaatcagata cagccccggc tggcggtgct cgtcacgcaa
    10081 cacaaaatcc gtgttgatat tatccacctg ccacgccgct aacattccct gactgagctt
    10141 atccgtgccg agagcggaaa tataacgcac ctcaatctgt tcaggcgaac tcacccgagc
    10201 caaataggta gcggtgttga gcgaatcccc accataggtt tggtgcatct ccccaaacgg
    10261 ctccccgttt aactcaatca tacattcacc gagaatggcg agttttttca taggaatacc
    10321 ttctaagtta cacgccgcta taagcagaga atccgccatc aacaggtaat acaacgccat
    10381 tgataaagct ggaataatgg tgatccatta aaaataggat tgcacctacc aattcatcgg
    10441 cttgtccgaa acgtcccata ggggtattcg tgaggatttt attagctcta gctgttggcg
    10501 taccatcggc gttaaatagt agagctttat tttgattact cactaaaaat cccggtgcaa
    10561 tagcattaca gcggatacct acttttgaga aataaactgc taaccattgt gtaaagttac
    10621 tgattgcaga ttttgctcca gaataggcag ggattttagt taatggagta aaggcattca
    10681 tactggatat attaatgata ttagcgccct ctttacccaa catatctttt gcgaaaacct
    10741 gtgttggtaa tagtgtgcct aagtaattta aattaaatac aaattcaatc cctgctttat
    10801 ctaattcaaa aaaagatttt gtattttccg gtaagttaat atcgtgaaat tcattatctg
    10861 tcgttgcttt tggattattc ccacctgcac cattaattaa aatatcacaa gtgccaaaat
    10921 cttttagaat ttcatctctt gcctgtttta tgctttctaa ttcaagtaca ttagtttggt
    10981 acgctttcgc aatatagcct tcatcggcaa tttcagaagc aaaattctgt gctgcttcta
    11041 gattgatatc gagtagtgca acttttgcac ctgtttttgc aatttctttt gcaaaataag
    11101 cacatagcac accacctgct ccggtaataa caacaacttt atctttaaaa ttatgatttt
    11161 gggcaataga cataataaga actcctaaga taaccaattc attggtacga taataatttc
    11221 agggaaaagt attaataaga acagtattgc agcatagact agcaagaatg gatagatacc
    11281 tttggttaat ctagcaatac caatttttgc tataccagaa ccaacatata ataccgttcc
    11341 aacaggaggc gtaattaaac cgatagatag gttaattacc atcataatac caaagtaagc
    11401 aatatcgatg ttatacgctc ttagtaatgg taatagtact ggtacaaaaa ttaatactgc
    11461 tgggattaag tccattacac agccgactaa taataagaaa atcataatga cgaacattag
    11521 tacagtcggg ctatcggtaa tacctttgat aaactcaact aactccatag gtatttgagc
    11581 aacagtaact gcaaatgcag atatcattgc cgccgctgca acaaacataa ccattgcagt
    11641 tgttttgata gtgcctaaga aaacatcttg gattttatct aaggttaacc cttttaagat
    11701 aatgctgatt attgctgcat aaattgctgc tacaactccc gcttctgttg gtgtaaagat
    11761 gccgcctctt aaacctacga taataataat tggaagtagc aatggtaaga atgctgattt
    11821 aaatgcagcc caacgttctt tacctgtttt tttcggttca acggtttgtt cttcgtttcg
    11881 gtataagaat ttccaaacta accataaacc taaaaccatt aaaaagcctg gaaccattcc
    11941 tcccataaat aatttggtaa ttgatgcacc ggctgtaata ccatagacaa tcattggaat
    12001 gcttggtggg ataactacag aaataatacc tgctgcacag attaagcctg ttgaacgtgc
    12061 aacatcatat tttcttgcaa ccatcatcgg aataagaatt gcaccgagag ccgcggtatc
    12121 agcaacagcg gagccggata aacctgcgaa aattaagcct gaaataatca ctacatagcc
    12181 caatccgcct ttaatatggc cgaccatgct cattgcaaaa ttgataatac gttcggaaat
    12241 accgccgtgt ttcataattt caccggtcag cataaaaaac gggatagcca tcagcggaaa
    12301 attatttgta cccattacga aattctccgt gattaattgg gcatcaaaca tatccatttt
    12361 ccatagcata aaactggcac taagtagcat agagagagca acgggcactc ctaaaaagag
    12421 aaagaggaat agacttccta aaaatagcca taacatattt atttctcctc tttaatgaaa
    12481 gctagccgaa tatgtttcca taaatttgtg aatacaatag cgaaatagga gatagatgaa
    12541 ataactgctg caaaatatag aaacgcagat gaaatttcag ttgctggcat tttttgtgtg
    12601 tatgtcaata acattaactg gtatgcaccg taagtaataa atgacagtgc aactaagact
    12661 aaaatatcag caaagaacag taagtacatt tgtacttttg ccggtagtgc agaaacaaca
    12721 atatcaacgg tgaggtgtcc cctttccttt gcaacgagga ttattcctag aaagatcata
    12781 tagacaaagc agattctggc gaattcctca gaccaagcta ttccggagtc aaaaaaatat
    12841 cgtaaaaccg cattaaaaaa gactaggata atcattgtag atagagcaat tatcgcaagg
    12901 agtttgagag ttctatctaa tgctgtagaa atttgcataa atttctcctt cttcatttag
    12961 atgggcgacc tcttttatcc ggtcgcctcg cttattgctt atttggctgc gtggattttt
    13021 gaaataacat ctttagccca atcatatttc tgatagaaat tttgataaag cgtttcggat
    13081 gcttttaaca tatcagcttt aaattgttca ctcggaacaa tgacttcttt gccatttttg
    13141 tggaagaaat cttttacatc ttgttccatc ttcatcgcta attcccactc tttttcttgg
    13201 tagagttttg ctgcctctaa gaagattgtc tgatcttctt tagacatttt attccaagtt
    13261 ttcaaactaa gttgtagtaa gccaggtgag aaaatatgat tagattcaat aatatatttt
    13321 tgcacctcgt ataaaccaga atctttaatt aacatatatg gattttcttg cccatcaatg
    13381 actttttgtt ctagtgcggt aaatacttca cttaaaggca tactttgagg gttaatatgc
    13441 attgcttttg cccagtccac aaacaacgaa tttagtggaa cccttaatcg caaaccttta
    13501 aatccatcaa aattctcaac ttttttattg gaagagataa cacggaagcc attcatacca
    13561 tacgctagta atttaatgcc gtacttctcc attttttccc cgatttcttg agcaatagga
    13621 gattctagaa ctttcttagc ttcggcatta tctttaaata gatatggcca ctcccatacg
    13681 ccaaaaattg gatcaacatt ttgtagtaat aaacctgtaa tgccaccttc aatcgtgcca
    13741 ttacgcaaac catttacaat ttgatcttct cctcccaact ggttatttgg gaaaatacgg
    13801 atttcgtagc gtccttctgt tttttcttca atggtttttt tgaagtattc ctgcaatgcg
    13861 atatttgatg gatgaacatc tgaattatag tgaccaatct taatgatagt cttcgcaaat
    13921 gccgaaccgg tgaacatcag gctagaaatt aatagagctt tagtgaaagt tttgagtttc
    13981 atagttatta cctcgtaggt gagttagtat ttaaaataca gcgatgattt ttaagtaatc
    14041 atcaggatta gctgagagtt cttcgatata gtgaggtatt tcatcaaatg taattacctt
    14101 actaatgata tcttttggtt caattcttct tgatgccaga agctctaatg cttcttcaaa
    14161 tgcccccttg cttgttcttg ccccataaat attaagttct ttgaaggtga ttaaattagt
    14221 tggtaatggt gtttctgttt tcggccatcc ggttaaagca atacgtccag caaaagaggt
    14281 gtatttaagc gtattttgta ctgcgacatt tgctcctgac gcttcaataa ccacctctgc
    14341 cattcttcca ttggtaattg atttaatagc ttcaagatcg ttttcttttg ttggattaat
    14401 tgtgtgtgga ataccaatag attttgcgta atccaatcgc ttatctaaaa tgtcaattaa
    14461 aatcggcgtc gctccataag ctttggcaac caatgcagcc attagcccaa ttgcccctgc
    14521 tccaatgata gcaacatgtt caccagcttt gacttttgtt ctatgaattg cgtgtaagga
    14581 aatagttaag ggttctgcta acgctaattc gtgtattggc atatcaggtg ttttgattat
    14641 catatgggct ggatgtctaa caacctcttg cattgcccca tcaatatgta cccccaatac
    14701 ttttagagat tcgcaacaat ttgttctacc aatggagcag ggatagcaat gtccacaata
    14761 gatgtaaggt tcaatgatga cacgatctcc tacattaata ttatttggca tacctttacc
    14821 agactcaatt actgtgccaa cgatttcatg ccctaaaatt ctaggataag taacaagtgg
    14881 attagtgcct ctaaatgctc caatatcaga gccacatatc cccatacctt ctactttgat
    14941 tagcacatca ttttcacctt taacaggata agaaacggtt tgtataccaa ctttattagg
    15001 ttctacaaga catactgatt tgagtggttt ttccatgatt ttgtcctttt ttgataaagt
    15061 taatcgacat tttgtagtgt caatggtatt ttatgcacag atactaacac caaaaaacaa
    15121 gtttggcatt ccaatttttg tgattttgtg aacctgatca caaaaatgaa attttggaat
    15181 tccaatttcg tgaggattta tgcaaaatag ttccagaact tacactaaaa taggaaaaat
    15241 tctcaaagag gaaattgctc aaggaaaata cagagtagga gataagttac ctactgagag
    15301 agatatttct gaaagatttg aagtgagtag aactatcgta agggaggcga tagtgatgct
    15361 agaagtagaa aagcttattg aggtaaaaaa aggatcgggc gtgtatgtca ttagagtccc
    15421 ggagcttttt ccagaagatt ttccagaaga gaaagataat gagctaaggg atgttgggcc
    15481 atttgaacta cttcaagcac gacaattatt agaaagcagt attgctgagt ttgcagcaca
    15541 gcaggctacc aaacaagata tacaagtact tcgtaacata ttagaaagtg agaagaaact
    15601 tttgttagag aagatggatg actacagtgc agataaggaa tttcatcttg cattagctca
    15661 tatgacgggt aacgatgttc tgattcaatt acaagaacag ctttggcgat accgctttaa
    15721 tagtgcgatg tgggctcagc tacactccag aattttacag catgatcatc accacttgtg
    15781 gatagaggat catgagcgaa ttttaaatgc aatacagaga aaaaatcctg cattagctcg
    15841 taaagcaatg tggcaacatc tagaaaatgt taaaactaaa ttgcttgaat tgtctgatgt
    15901 agaggatcct aaatttgatg gatatctatt caatgtaaac cccgttgtag taggtatcta
    15961 aaacctaaac tacacaatga ggagtttact atggaacaag catggcgttg gtatggacca
    16021 aacgatccgg tatctttaga tgatgtaaga caagcagggg caacggggat tgtgacagcg
    16081 ttgcaccata ttcccaacgg gcaggtgtgg tcggttgagg aaattaataa acgtaaggca
    16141 ttattagctg aaaaagggct ggtttggtcg gtggtagaaa gtgtgcctgt tcacgaagaa
    16201 atcaaaactc aaacaggcaa ctatcagcaa tggattgata actataagca aaccttgcgt
    16261 aatttggcaa gctgtgggat tgatacggtg tgctataact ttatgccggt gctagattgg
    16321 actcgtaccg atctggagta tgaaatgcct gatggctcaa aagcattgcg ttttgaccaa
    16381 gtggcgtttg cggcgtttga gttatatatc ttaaaacgcc cgggagcgga agccacttac
    16441 tcatcagcag aacaagccga agccaaagcc tattttgagc agatgagtga cgctgatatt
    16501 gcaaaattaa ccaaaaatat cattgccggt ttgccggggt ctgaggaagg ctatacgctc
    16561 gaagaattcc aagcacagct tgaccgctat caagggctct cggctgaaaa attccgtacc
    16621 catttagcct atttcttaaa tgagattgtg ccggttgcac aagaggtggg cattcgtatg
    16681 gcgattcacc ctgacgatcc gcctcgcccg attttaggct tgccacgcat tgtttcaacc
    16741 atagaagata tgcaatggtt tgtggaaact caaccgcttg cagccaatgg cttcacgttc
    16801 tgtaccggtt catacggcgt attagccgag aatgatttgg tcaaaatggc agagcagttt
    16861 gcagatcgca tttattttgc tcacttacga gctacccaac gtgaagaaaa tccacaaagt
    16921 ttccacgaag cggatcatct tgccggtgat gtcgatatgt ttggcgtggt gaaagcatta
    16981 cttaccgaag agtatcgccg caaggcaaat ggcgatcacc gattaattcc aatgcgtccg
    17041 gatcacggcc atcaaatgct cgatgatctg aagaaaaaaa ccaacccagg ctattctgcg
    17101 attggtcgtt taagaggatt agcggagttc cgtggattgg agttggcact taagaaagtc
    17161 tattttaacg attagcctta tttattataa tgccctctac tgtagagggc attttatagt
    17221 ttgatatgtt caaaaaatat ttcggcgaaa taatcctttt tctcgttacc tttattgctg
    17281 cagcggggtg gtttttctct aaacacgctt tagttggatt accgcctatt ggctttatgg
    17341 gagggcgttt tatattagcc tctttgattc ttctgccttt ttcttaccga gagctgtatc
    17401 gtttagataa ggttcaagtt aaatattcgg tgattaccgg tcttacttac ggaatttata
    17461 ctattttttg ggtattgggg ctggctttta gtacagtgtt tggtgaaggg gcttttttgg
    17521 tgagccttgc gatgctgatt gctcctttgc tctcttggtt gatattcaaa catacgccac
    17581 cgaagatttt ttggttagcc ttacccattg cattaagtgg gctttacttt ctttctgcgg
    17641 agaaaggcat ctttcatttt tccttaggca gtacgatttt tctggtgtca tcagtgtttg
    17701 gggcgttata ttttgtgtta aataatcaat acgccaaaca agtctcattg tttccattaa
    17761 ttactatcca attggcgata gtcggtgcgg tctgtagctt gtattcctat tttatggaaa
    17821 gttggcattt cccgattctc accgaagtgt ggctctggtt tgccgcaagt gtattgattg
    17881 cgacaaattt acgtttttta atgcaaacac tggggcaaaa atattgccat attggtactt
    17941 ctgcactcat tatgttactt gagccggttt ggacattgtt attgagcgtg atgttattgg
    18001 gggaacaact tagtgcgaca aaatggctag gttgcagctt gattttgata gcattgatta
    18061 tttatcgact ccctattcta cgactcaaaa aataggtaaa acaaaagcaa atatgccata
    18121 gtattggaag cagttaggca ttttagagta agtaacaagc ggtcattttt gcaaaaaatc
    18181 ttgcaaaaat gaccgctttc tttcttttat ccgttcaatc tatgttaaaa ttctacattt
    18241 ttataagatg agagagagaa acgtggaaca gaatttagtc gaatttttaa ccaaaacctt
    18301 agatgattta aaggcacaag atattttagc cattgatgtg aaagggaaat ctagcattac
    18361 tgatacgatg attttagcca ccggtacatc gagccgtcac gttgcttcaa cggcagagcg
    18421 tttaattacg gaagcaaaac aggctgggtt cgaggtattt ggagatgaag gtaaagcagt
    18481 tgccgattgg atcgtggtcg attttgggaa ggcaatggtt cacttgttgc aatccgatag
    18541 ccgtgagatg taccaattag agaaactttg ggcgtagcag ttcaataagg aacgacaagc
    18601 ggtgattttt gcaacatttt ttgcaaatta aaccgcttgt aagtgaaaga gagatgaaaa
    18661 ttcaattaat tgcggttggc actaaaatgc cggcgtgggt aacgacaggg tttgaagagt
    18721 atcaacgccg ttttccgaaa gagatgccgt ttgagttggt ggaaattccg gcaggaaaac
    18781 ggggcaagaa tgctgatact aaacgcattc ttgagcttga aggcaaagca atgttggcgg
    18841 cagcgggcaa ggcaaaaatc gtgactttgg atattccggg caaagcgtgg acaaccgagc
    18901 agttagccac tcagttagag ggctggaaaa acgatgggcg agatgtagcg ttattgattg
    18961 gcggcccgga aggattatca ccggaatgca aagccgctgc cgagcagagt tggtcgttgt
    19021 cgcctttaac cttacctcac ccactggtgc gggtggtggt ggcggaaagt ttgtatcggg
    19081 cgtggtcggt taccattaat cacccttatc atcgagagta gtgagtcatt ttagatagtg
    19141 ttatatgttt ggtaaattag caaaattcac agcttcaaac cagcgagaaa aggtgcgaga
    19201 cgggcaggca gaaagcaatc tgtatgcccg ccgtgcctta gttgcgtttc tgggggtgtt
    19261 ggcgttaagt ggtgttttat taaccaactt gtatcacttg caagtggtga attatgagga
    19321 ctaccaaacc cgttcaaacg gtaaccgcat taaattgttg cctgtgccac cggctcgagg
    19381 cttaatttat gaccgtaacg gtaaagtatt ggcggaaaat ttaacctatt tcgggctgtt
    19441 tattgtgcct gaaaagacgg aaaacattga gcagacttta accgagttga aggatattgt
    19501 tgggctgacg gacgaagata tcgagaatta tcataaagag aaaaaacgca gttctcgcta
    19561 taccccaatt atgctcaaag gcaatttgaa tgaggctcag atggctcgtt ttgcggtgaa
    19621 ccaataccgt tttccaagtt tagatgtgca ggcgtattat aagcggaatt atccttacgg
    19681 cgagctttta acccatatta tcggttatgt ggcgaaaatt aacgaaaacg ataagaaaaa
    19741 gctgcaagaa gccgggaaat tcggcaatta tgccggttcg cacgatatgg ggaaattggg
    19801 gattgaaaaa ttctatgaag atcagctcca cggtgtcacc ggttttgaag aggtagaaat
    19861 taataaccga gggaaagtaa tccgtaaatt gcgtgaccaa gcaggggttg ccggtagcag
    19921 tattcgcttg agtattgatg tggaattaca gcaatatgtg atgtcgttaa ttgctaagca
    19981 taaaggggcg gtggtggtgc ttgaccctcg tgatagcagt attttagcga tggtctcaaa
    20041 cccaagttat gacaataatt tatttgtggg cggtatttca gggcaggatt ataaagcatt
    20101 attggacgat ccaacccgac cactttatag ccgtactaca caaggcactt atccaccggc
    20161 ttcaactatt aagccattta tggcggtggc aggtttggaa gagggaatga ttaccccttc
    20221 taccaccatt tcagaccccg gctattggat tttgcccggc actacacaac gttatcgaga
    20281 ttggaaacgt agcggacacg gtgcaactaa tgtgaataaa gcaattaccg aatcgtctga
    20341 tacctttttc tatcaattag cctataaaat ggggattgat aaaatgtcgg attggatgaa
    20401 aaaattcggt ttcggagtga aaaccggtat cgatattttt gaggaatccg caggggtaat
    20461 gccaacccgt gaatggaaac aaaaacgcta taaaaaacct tgggtgcagg gcgatactat
    20521 tccggttggg attgggcagg gctactggat ttcgaccccg ttacagttgg cgaaagccac
    20581 ggcggtgtta atcaacaacg ggcgggtgaa tacaccgcat ttaatgcttg aagtgcaaag
    20641 cagtaattcg gttacgccgt atcaagaccc attgttgtat gaagatatta aaggcgtgcc
    20701 ggatgtctat tggaatttag caaaacaggg aatgtataac gtaaaccacg ccgcaaacgg
    20761 tacggcacga aaagtgtttg ccggtgcatt ttatcattca gcagggaaaa ccggtacggc
    20821 tcaggtgttt aacttaaacg gtaaaaatta cgataaaaat gcgattaaaa aagagttgca
    20881 cgaccacgct tggtttatcg gctatgctcc ttatgaacaa cctaaaatag tggtggcatt
    20941 aattttagaa aatgcaggcg gtggtggtag tgccgcggct cctgttgctc gtcagattat
    21001 ggattatgct ttgagaaaag gcattggtga acagccggat tcgcaaaatt ctgagcaaaa
    21061 taaaccgctt gtcacagagg aacatcatga atagtggctt taaaaaactt ttctggaaaa
    21121 ttttttcact cgatctcctt ttattatcag gattattagc tattaccggt tatggtttat
    21181 tagtactata tagcgcaagc ggtgcaaatg agcggatgtt taccagtaga ctgattcaag
    21241 tttcgctagg gcttgggcta atgttgataa tggcaatggt acctcctcgc ttttatcaaa
    21301 aagtttcgcc ttatctgtat attttctgtc tgatattatt gattttggtg gatttggtcg
    21361 gcgaaaccag taaaggagcg caacgttggt tgaatttagg atttgttcgc tttcagcctt
    21421 ctgagattgc caagctcgct gtgccactga tggtagccac ttatttaggt aagcggccgc
    21481 ttcctccgag ttttaaagat acttttatcg ccttagccat tattattgtg ccaaccttat
    21541 tggtggcaat tcagcccgat ttgggaacat ctattttagt gtgttctgcc ggtatttttg
    21601 ttttattttt ggcagggcta agttggaaat taattggcgc aggtgtggtg tttttagccg
    21661 gttttatccc gataatgtgg tttttcttaa tgcacgatta tcaaaaaacc cgggtgatga
    21721 ccttaattga tcctaataaa gacccgttgg gtgccggcta tcatattatt caatccaaaa
    21781 ttgcgatagg ctctggtggc attaatggaa aaggctggat ggaaggaacg caatcccagc
    21841 ttgaattttt acctgaaccg cataccgatt ttatttttgc agtgttaagc gaagagcatg
    21901 gtatgatagg tgtgctgatt ttattagcga tttatttgtt tattattgcc cgaggtttag
    21961 tgattggcac aaaatcggat tctgctttcg ggcgtatatt atcaggtggt acagcccttc
    22021 tattttttgt ttacgttttt gtaaatattg gtatggtgag tggtatttta cccgtagtcg
    22081 gtgtaccatt accgcttttc agttacggcg gaacctccta tgtgacgctg atggcggcat
    22141 ttggtttgat gatgtcaacc tatgttcacc gtaagcgtgt aggtagtaat aatccttatg
    22201 ataaactgaa ataaattaaa cttttgcttt tttgcggtat caaaaagcag tgaaacgatc
    22261 atcgttacaa acaataacga catccacata gaggaaaaaa cttatatgag attaggtaaa
    22321 attgtaaccc tgttgttagc tggatttctg acatttagtt cattaaattc tttggctgcg
    22381 acaaagaata caaaagctaa atcgagtatt ttagccaaga agcaagcaac ttctaaagca
    22441 ataaaaaaag taggtatttc taaagttaag aaaaaagaag tagtggctaa agctacaaaa
    22501 aagaaaacaa tttctactgt tacaactaag ccgattaaat ctacaaaaaa gctggctcgc
    22561 aaggttgtca agaaaacggt aaccgctaag aaaaaattgg taaaaaagca gcataagcca
    22621 ctggtcaaaa aacatttcca gactggtgtt gccagctatt atgcaaatta ctttaatggt
    22681 cgccgaaccg ctaatgggga gactttcaat aacgcaaaaa tgacggctgc acatcgaact
    22741 ttaccatttg gtactttaat tgaagtgacg aatttacgaa atggtcgttc tgtggtggtg
    22801 cgtgtaaatg atcgcggacc ttatgctcac gcacgggtct tggatttatc atcagccgca
    22861 gcgaaaaaaa tcggtatgca ccattcgggg acggcaagag tgaaaattgc gattgttgat
    22921 aagtcaaaat tgggatcgac taatcagttt tatgtaatga attaatttaa gagggaatat
    22981 gaaaaaaaca ttagtgaaag cgatgagcgt ggtaggtttt gcggtttcaa gcattgccta
    23041 tgcggattta aacactaact tcaatttatc ggcaccccag atcaacgcac aaacctatat
    23101 tttgatggat tacaactccg gtgaagtttt agtgagccta aatccggatc aacgtcaata
    23161 tcctgcatca ttgaccaaaa tgatgactag ctacgtagtt ggtgaagccc taaaatcggg
    23221 aaaagtgcaa aacagtgata tggtgatagt caccgaaaat tcgtgggcgc aaaaattccc
    23281 cggctcttca ttaatgtttt tagatttaaa cagcaaagtt tcagtaggtg agttgatgaa
    23341 agggctgatt atcgtctcgg gtaatgatgc ctctgtggcg cttgctgaac atgtttcagg
    23401 ctcacaagcg gcgttcatta atgaaatgaa caaatatgcc caacagtttg gcttaaagaa
    23461 tactcacttt accactgttc acggtttaga tgaccctgag caatattctt ctgctcgtga
    23521 tatggcgatt attggttcgc atattattcg tgatcagccg gaagagtata aaatttatgc
    23581 ggaaaaagag ttccaatata acatcaaaaa accacaacca aaccgcaacg gattattgtg
    23641 ggataaaacc attcaagttg atggtatgaa aacagggcat actgataaag ccggctataa
    23701 cttagtcgca tcagcaatta acccgaatac acgtttaatt tctgtagtga tgggcgtgcc
    23761 aacttataaa gggcgtgaag tggaaagtaa gaaattactg caatggggct ttgcgaactt
    23821 tgaaaccatt aaatctattc cggcagctca atcggtggca gagcaaagtg tctattacgg
    23881 tgaagtcaat aaagtacaat taggctcggt gcaagatagc tttgtgacta tcccgaaagg
    23941 tcgctcggca gatttaaaag cccgttatga gttagagaag aaaaacctcg aagctccttt
    24001 agcaaaaggg caggtagtgg gtaaaatgat ctaccaactt gacggcaaag atgttgcaag
    24061 cactaactta caagtcttac aagatgtacc ggaagccggt attttcggca aagcgtggga
    24121 ttggattgcc cttactgtga agagcttgtt cgattaatct tgttatttgc ctttttatcc
    24181 ccatctaggg agcaatgcaa gcggtgtgat tttgcaaaaa atttgcaaaa tttcaccgct
    24241 taccgtttta gatatgaatg tataaaaagt gtagtggcga aaaatttttc gcccctcgaa
    24301 gaaagaatag aagaaggatc aaaaatgtct caacccaaag cgataaactt acaagattta
    24361 cctcaagcca aattaaaaga tctgctagag tttccgtgcc atttcacgtt caaagtggtg
    24421 ggagcaaacc gagaagattt ggttgatgat gtggtagtgg tcacgcaaaa atatgccaaa
    24481 ggcgattaca atccacgtca gcaaaaaagc tcaaaaggta cctataattc cgtttcgatt
    24541 gatattgtgg cggaaaatat tgagcaagta gaaactctct acacggaact tgccaaaatt
    24601 aatggcgtaa gaatggtatt ataatgcgag gggcgaatga cattcgccct caatttttca
    24661 ataaagcgat gttggaaaat agaaaatgaa attaataatt cgccaactag gcattcagcc
    24721 ttatgaagaa atttggcacc aaatgcaatc tttcacagat agccgtgatg ggaataccga
    24781 tgatgagatc tggctggttc agcacccggc tgtgtttacg caaggatcgg caggcaaacc
    24841 ggagcatttg ttaaatccaa ccaatattcc ggtggtgcaa agcgaccgtg gcggtcaaat
    24901 tacttaccac ggcgaggggc agcaaattat gtatgtgctg attgatatca aacggctgaa
    24961 atccttgggt aaagaagtgt cggttcgaga tttagtgact gccctggagc aaaccgtggt
    25021 acaaacgttg gcagaatatg gcatagaaag ttatccaaaa gccgatgcac ccggggtgta
    25081 tgtggacggc aagaaaatct gctcacttgg tttacgaatt cgaaaaggtt gctctttcca
    25141 cggtttggca ttaaatatca atatggactt aacgcctttt caaaacatca atccgtgcgg
    25201 ttatgcaggg ctggaaatgt gccaattaag tgaactggtt catcgccctg atttgcgttg
    25261 cgaagaggtt gctccaaaat tagtggctca tttcagcaca attttaggct ataataacca
    25321 acaaattatt aacaattagg ataaaacaca gtaatggcta catcgacagc tcaaacgacg
    25381 gcaactgcta cagtgaaaaa aatgagccct ttcaaaatgg aaaaaggggt gaaatatcgt
    25441 gatgccgcca aaacctctgt gattcaggtg cgtaatatcg acccggatca agaactctta
    25501 aaaaaaccgg agtggatgaa aatcaaactg ccggcaaatt cggcaaaaat tgatagcatt
    25561 aaaaacggta tgcgtcgcca cggcttgcac tcggtgtgcg aggaagcctc ttgcccgaat
    25621 ttacacgaat gttttaacca cggtactgca acctttatga ttatgggggc aatctgtacc
    25681 cgtcgttgcc cgttctgtga tgtggcacac ggcaaaccgc ttccgcttga cccggacgaa
    25741 cctcgcaaag tggcagaaac ggtgcaagat atgaaactca aatatgtggt gattacctca
    25801 gtggatcgtg atgatttgcc cgaccgtggt gcggctcatt tctctgcgac cgtgcgtgaa
    25861 atcaaagcct taaatccgca ttgtaaggtt gaaattttag tgcctgattt ccgtggacgt
    25921 gtggagcaag cggtggcaat tctcaaagaa aatccacctg atgtctttaa ccacaaccta
    25981 gaaaatgtgc cacgtctcta tcgtgaagtt cgtccgggag cggattacaa atggtcgttg
    26041 gaattattga aaatcttcaa gcaagagttc ccgcatattc cgaccaaatc cggcttaatg
    26101 gtaggcttag gtgaaaccaa cgaagaaatc ttggaagtaa tgcaagattt acgagaccac
    26161 ggcgtgacga tgctcaccat cgggcaatac ttacaaccaa gccgccacca cttaaaagtg
    26221 gaacgttatg tgccaccggc agagtttgat atgttccgtg aggaagctga aaaaatgggc
    26281 tttgaacacg cagcctgcgg accgttcgtg cgttcttctt accacgcgga tttacaagcg
    26341 aaaggcgaat tggtgaaata aaatcgataa gggcgaatat tatttgccct ttgtttttgt
    26401 ggtttgcaaa gttttagcaa aattaaaccg cttgtaatct cttctaattt actcttctat
    26461 agataatttc gttgttgcga attattttca ttgactattt gttatagaaa gttacaattc
    26521 aactttccat ttctttttgg agttccaatg aaaaaattac tattaaacag cgtatttgct
    26581 gccacattgc ttgcttttgg tgcaactgcc aatgccgaaa ttaaaaccat cactgatgta
    26641 ttagggcgtg aggtcaaagt tgatgtgcct gctaaacgtg ttgcactgac tttctattac
    26701 cctgactata ttgcggtaac cggtgttgaa aatttcgata aggtagtagg gatttcacga
    26761 gagttttggg aaaagttcaa cccaggcagt tgggcattat ttgcagaaaa aatgccaaat
    26821 ctaaaaaaca ttgccgatct tggctatgtg aatagtggta ctttttcaac agaaaaaacc
    26881 atcgcattaa aaccagatgt gttagtgcta cctgaaattc aatatcaagc gttagccagt
    26941 gaaatttcac gcattgagca agctggcatt cctgttgtag tagatttcaa caagcaaact
    27001 attgaaaacc atacaaaaag cgtgagagtt ttcggtcagc ttacaggcac tgaagagaga
    27061 gcggagaaaa ttgccaaaga gtatgaagag ggcattgctg atattcagag ctgtattgat
    27121 aatgcaaaag taagtaagcc gaaaatctat gctgaatttg gtaataaagg cccgaaagag
    27181 catagtttta cctttggtaa aaatatgtgg ggagcgattg ccgaaacggt gcgaggcgat
    27241 aacattagtg ccccgtttgt agaaaactgg gggcagatta accctgagca ggtgttagtt
    27301 tctaaacctg atgtgattat gatttcaggt acggaactag gcaacgacac taaccctgag
    27361 attatgtcga tggggattaa tattgaagaa gccgatgctc aaaaacgctt aaaaggcttt
    27421 attgagcgta caggttggaa agagttacct gcggtaaaat cagggcgtgt ttatggttta
    27481 tatcatacag cttctcgctc aatttcagat ttagcgagtg ctcaatttat ggcaaaagca
    27541 ctttatcctg aattgtttaa agatatcgat cctgaaaaaa cgtatttgga tttccacaac
    27601 aactacttac caattacgcc aaaaggcaca ttctttatgc aactgaaata aaaataacaa
    27661 gcggtcattt tgcagattta ttttgcaaaa tgaccgcttg tattcgcttt tactatttgc
    27721 ggttcaaaca gcaatcaata tttaaacatt tgcgaagcgg gcggataatc ggcgagccgt
    27781 ttccatcata taaaatctca atattgacat tatagagtct ctgaataata tcgcattcca
    27841 acatatcaca agctctgcct tgtgcttgaa tttcccctcg cttaatagca tcacactatc
    27901 cgaaaattga gccgcaaggc ttaaatcgtg cagcaccata attgtaatta ggttattcgc
    27961 tcgagtgtag gcattcacat attcaagtaa gttgatttga tgatacatat ccaacgcact
    28021 gacaggctca tctagcagca gaatgtgtgg tttacgtagc aatacttgtg cgaacattac
    28081 catttgccgt tgcccgccac ttagccgcat aatatcttga tgagctagat gtgaaatacc
    28141 gagtttatcc ataatatcaa cggcttcatt gagtaattca tcgctaatat acatattcag
    28201 gctatcaagt tgccctaata aaataacctc taaggcactg agtgaggcct ctacctgtgt
    28261 gtcttgtggc atatagccaa tttctttacg ccaactatgc aagtggcttg aggttaattt
    28321 attaccgtca aaatcaattg tgccttgatg agcaatttcc ccaaatagag ttttaaggag
    28381 agaagattta cccgcaccat ttgggccaag taaagtatag atcttgcctt gttcaaaatg
    28441 tagattgatt ttatcagcca ccact
//
LOCUS       DANLZD010000013        28206 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.013, whole genome shotgun sequence.
ACCESSION   DANLZD010000013 DANLZD010000000
VERSION     DANLZD010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 28206)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28206)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28206
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.013"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..267
                     /locus_tag="PXE26_000396"
     CDS             <1..267
                     /locus_tag="PXE26_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HDL5593015.1"
                     /translation="LIESLASKNPSLPIKMVEHCVKELLEQLTATLEEGERIEVRGFG
                     SFSLHYRQPRLGRNPKTGESVLLGAKYVPHFKAGKDLKERVDLL"
     gene            304..591
                     /locus_tag="PXE26_000397"
     CDS             304..591
                     /locus_tag="PXE26_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1049 domain-containing protein"
                     /protein_id="HDL5593016.1"
                     /translation="MIKYILGILIVIAVIIVAVTIGANNDQLITFNYIFAQSELRLST
                     LVAILFGLGLILGWLVTGIFYLKIKFQNVALNRRVKRQAQQITELTTPKAE"
     gene            595..1791
                     /gene="lapB"
                     /locus_tag="PXE26_000398"
     CDS             595..1791
                     /gene="lapB"
                     /locus_tag="PXE26_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HDL5593017.1"
                     /translation="MLELLFLLLPIAALYGWYMGQRSAKKDQETASNKFSREYVTGLN
                     FLLSNQQEKAVDLFLSMLQKQESENHIASESQFEAELTLGNLFRSRGEVDRALRIHQT
                     LVNSPHYSFDQKLLAKQQLAKDFMVAGFYDRAENYYISLVDEPEFAKYSLSQLAVIYQ
                     KTREWKKAINVTEKRLRIEPDADKIPLSHFYCEYAQGVKFDDKAAFIESLNKALEYYP
                     QSTRASIILGDFYLEEGEYLRALSYFEQILVQDPDYISEVLGRIKQSYMALEDLNGYE
                     LFLIRANRVKHNSSVDIALTEFIEEKDGINAAHSKLYQQLSTYPNLITFHRFIRYQAD
                     FAEEGNGKESLVLLHNMVGNQIKRSFQYRCLNCGYQSYRLMWQCPSCNQWEKIKPVQS
                     IEGIIQ"
     gene            1815..2507
                     /gene="pyrF"
                     /locus_tag="PXE26_000399"
     CDS             1815..2507
                     /gene="pyrF"
                     /locus_tag="PXE26_000399"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HDL5593018.1"
                     /translation="MNNKVIVALDYETEREALEFVDLVDPSLCRLKVGKEMFTTLGTN
                     FVKQLHERKFDVFLDLKYHDIPNTVARAVRSAADLGVWMVDLHASGGLAMMEEAKKIL
                     EPYGKEAPLLIAVTVLTSMEDLDLLQIGINASPMEQVIRLAHLAQRAGLDGVVCSPQE
                     VEVLRTHCGQDFKLVTPGIRPKGTDFGDQRRVMTPKQAVETGSDFLVIGRPITQAQDP
                     LAVLKSINQSIS"
     gene            2590..2901
                     /gene="yciH"
                     /locus_tag="PXE26_000400"
     CDS             2590..2901
                     /gene="yciH"
                     /locus_tag="PXE26_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HDL5593019.1"
                     /translation="MTLVYSTETGRIKSEVIKEERPKGDGIVRIQRQTSGRKGKGVCL
                     ITGLDLEDKALNSLASELKRKLGCGGSFKDGVIEIQGDNRGFIKQILEQKGFKVKLAG
                     G"
     gene            3004..5166
                     /locus_tag="PXE26_000401"
     CDS             3004..5166
                     /locus_tag="PXE26_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HDL5593020.1"
                     /translation="MWKKTLIAVFLASQYAFAVGTGKEPSKSYTETELKQLKNDWLAI
                     YQKELQYAENLRLKQRENFQQINYLADAAISQKNLSLSTEQIIQRLLLTLAGYPLEMK
                     AEWKLLNAKITLKQATESEVKAFISKYPDSLYQRQLQNLMFELLYREQKFPELLEYAQ
                     NVKQSSLADQCRLFSARYELAASKAQINPEVSQVTEQKAENAELLALVQEFDRFWLAT
                     PKLTSDCANLESYWRDQGLKTDEKMRLKAVELIKQNANAELANLAANVNNENLKIWLS
                     SVEKVANNPADLQNFIENQPLDSPFYADNKAIIQQLFAKYVRTLSENMENPSFQQYQT
                     WAEKYQLSSEEINGWKNAFITRFFDNPEPTFQFWRDEQIKLLKTDNLTERRLRMAIWQ
                     KADLNEWLVLLSQQAKEKAEWRYWAAKEEKNEAKRKVDFESLAKERGFYAMLAAQQLG
                     IVYQIPMLEVPELTQAQLELYANQLARIQELRELGQFDQARKIWIDWIKNIKPEAGEN
                     TPTKIQLALIKYAKDKNWYDLAVEGTIQTKAFDYLDLRLPNAYSDWFDLHLQDKKISK
                     TFAQAIARQESAWNAQAQSHANARGLMQLLPTTAQKTAKDNGLTFKDGNDLFQPFNNI
                     MLGTTHLMELNEKYPNNRILIASAYNAGAGRVEQWLKRSNGQLAMDEFIASIPFYETR
                     GYVQNVLAYDYYYQMLYSDINDKNGLKMFYQEELTRKY"
     gene            5215..5291
                     /locus_tag="PXE26_000402"
     tRNA            5215..5291
                     /locus_tag="PXE26_000402"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5249..5251,aa:Met,seq:cat)
     gene            5518..5979
                     /gene="rimP"
                     /locus_tag="PXE26_000403"
     CDS             5518..5979
                     /gene="rimP"
                     /locus_tag="PXE26_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HDL5593021.1"
                     /translation="MATLEQKLEDLVLDSIEALGFELVGIECQRAGRFLTVRLYIDKE
                     GGVTIDDCSDVSRQVSAIFDVEDPIADKYNLEVSSPGLDRPLFTVAHYERFIGQDVVI
                     HLRIPMFDRRKWQGKIKQVEGDFITLTVENEDRQFAFGNIQKANLVPVFNF"
     gene            6000..7496
                     /gene="nusA"
                     /locus_tag="PXE26_000404"
     CDS             6000..7496
                     /gene="nusA"
                     /locus_tag="PXE26_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HDL5593022.1"
                     /translation="MSKEILLAAEAVSNEKQLPKEAIFEALETALTIATKKSRDLDID
                     VRVVVDRKTGDFQTFRRWAVVENVNNMTREISLEAAQFEDPNVQLGDFIEDEVESIEF
                     GRVAIQTFGQVVKTKIREAEKTKIIDEFRSDLGKIILATVKKVTRDNIFLELQGKSED
                     IKGEAVIVREDMIPRENFRPGDRVRGVLYEIKPESKGPQLFVTRAKPVMLEELFKLEV
                     PEIGEGVIEIKGSARDVGSRAKIAVKTHDKRIDPVGACVGMRGARVQAISNELGGERV
                     DIVLWDENPAQFVINAMAPADVSSIVINDETHSMDIAVEAKNLAQAIGRNGQNVRLAT
                     QLTGWALNVMTVEELTKKSEEEDGKVINLLTSALEIDEEFAQVLIEEGFTSLEAIAYV
                     PVDTLTAIDGLEDEDLVEELQSRAKNAITKKALEEEKLLKSAQIEEKLLTLEGMDRHI
                     AFKLAEKQITTLEELAEQGVDDLADIEELSEEKAGELIMAARQICWFN"
     gene            7481..10048
                     /gene="infB"
                     /locus_tag="PXE26_000405"
     CDS             7481..10048
                     /gene="infB"
                     /locus_tag="PXE26_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HDL5593023.1"
                     /translation="MLVQLSKEDNKMTEEKKTLSLGGARKASKVNTTTTSGKVKAVEV
                     KEKKPKIDAKALQEKAAKEAAAAKARAEKEAAEKLAKEKAEAEAKEKAAKKAAESTAS
                     KPISVPVMPSSKAKEEKPKAQQVQPKQEKAVDPEKEAKRKEEAELRRKQEELAQQKAE
                     MEAKRAAENARRLAEIAREEAEDNGNEDFDDERFTSSYAREAERDNDRRSEGNRGRNG
                     KGNVAKAKKGGREEDKNERSADRRNHKEVKGKGKQGKKGAALQQAFTKPAQVVKADVV
                     IGETITVAELANKMAVKATEIIKMMMKMGEMVTINQVIDQETAQLVAEELGHKVILRK
                     ENELEEAVLEDRDTHAEKVTRAPVVTIMGHVDHGKTSLLDYIRKAKVAAGEAGGITQH
                     IGAYHVETDDGKMITFLDTPGHAAFTSMRARGAKATDIVVLVVAADDGVMPQTIEAIQ
                     HAKAAGAPLVVAVNKIDKPEANPDRVEQELLQHEVISEKFGGDVQFVPVSAKKGMGID
                     DLLEAIILQSEVLELTAVKDGMASGVVIESYLDKGRGPVATILVQSGTLNKGDIVLCG
                     FEYGRVRAMRDENGKDVESAGPSIPVEVLGLSGVPAAGDEATVVRDEKKAREVALYRQ
                     GKFREVKLARQQKAKLENMFSNMAAGDVAELNIIVKADVQGSVEAISQSLMELSTDEV
                     KVKIVGSGVGGITETDATLAAASNAIMVGFNVRADASARRVIENENIDLRYYSIIYEL
                     LNDVKAAMSGMLQPEFKQEIIGLAEVRDVFRHPKFGAIAGCMVTEGIVKRNNPIRVLR
                     DNVVIFEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVKVGDQIEVFEVVEVKRTI"
     gene            10133..10513
                     /gene="rbfA"
                     /locus_tag="PXE26_000406"
     CDS             10133..10513
                     /gene="rbfA"
                     /locus_tag="PXE26_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HDL5593024.1"
                     /translation="MSREFKRSDRVAQELQKEVAVILQREVKDPRIGMVTVSDVEVSR
                     DLAYAKIFVTFLFDNDAEAIKQGMQGLEKASPYIRTLLGKAMRLRIVPELRFIYDESL
                     VEGMRMSNLVSSVIKNDEEKHKED"
     gene            10516..11439
                     /gene="truB"
                     /locus_tag="PXE26_000407"
     CDS             10516..11439
                     /gene="truB"
                     /locus_tag="PXE26_000407"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HDL5593025.1"
                     /translation="MSRPRKRGRDIHGVFLLDKPQGMSSNDILQKVKRIFQANKAGHT
                     GALDPLATGMLPICLGEATKFSQFLLDSDKRYLVTAKLGERTDTSDAEGQVVETKAVA
                     VTKSQILAALEKFRGDILQVPTMFSALKHNGKPLYEYARAGITVEREARPITIFELNF
                     IEYKAPFLTLEVHCSKGTYIRTLVDDLGEELGCGAHVTMLRRTAVADYPIEKMMSYAD
                     LQNLAENQPLAELDQHLLPMDTAVSALAKINLSSEQTKAVGFGQRIRFDNLNQLYGLV
                     RLYSEDEQFLGVAEITNDTVIRPNRMINLTE"
     gene            11442..12522
                     /locus_tag="PXE26_000408"
                     /pseudo
     CDS             11442..12522
                     /locus_tag="PXE26_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252783.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
     gene            complement(12560..13084)
                     /gene="tadA"
                     /locus_tag="PXE26_000409"
     CDS             complement(12560..13084)
                     /gene="tadA"
                     /locus_tag="PXE26_000409"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HDL5593026.1"
                     /translation="MFIKPNQTSCPLQISEQDIAFMQYALDLADLAEAKGEIPVGAVL
                     VDKNQQIIGRGWNQTIQLCDPSAHAEMQAIRQAGQTLGNYRLLDCTLYVTLEPCPMCA
                     GAILHSRIKRLVFGASDYKTGAVGSRYHLFEDYKMNHFLEVHGNVLGRECSQKISDFF
                     KQRRLQKKGDALIK"
     gene            complement(13166..14974)
                     /locus_tag="PXE26_000410"
     CDS             complement(13166..14974)
                     /locus_tag="PXE26_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDL5593027.1"
                     /translation="MTTESLTFADLGLPQPILDAVNEMGFVNPSPIQQECIPHLLAGR
                     DVLGMAQTGSGKTAAFSLPLLAQIDPTQRHPQMLVMAPTRELAIQVADACEQFAKNMK
                     GIRVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADE
                     MLRMGFIDDVETVMAELPETHQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAP
                     DIEQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALN
                     GDMTQQAREQTLDKLRSGRLDILVATDVAARGIDIERISLVINYDIPLEEESYVHRIG
                     RTGRAGRSGRALLFVEPRERRLLRNIENLIKKPINEVAIPNHEILMEKRREKFKARIS
                     KQLEHHDLEKYRELLEDLFTADQDHEELAAAMMMLLQEKQKLILPPDPVVRAARSERG
                     RDRNERNDRRNGREHRENNGVAMDLYRIELGREDGVEVRHIVGAIANEGDISSRYIGH
                     IKLYDKYSTIELPQGMPNHLVQHFAHKARVLSKPMQMTLLGSANSASNANPFEGRGRR
                     GNDRNDRGGRRDGGFNKDRKGGFKEKRFSEKRGRRD"
     gene            complement(15176..16099)
                     /gene="nlpI"
                     /locus_tag="PXE26_000411"
     CDS             complement(15176..16099)
                     /gene="nlpI"
                     /locus_tag="PXE26_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpI"
                     /protein_id="HDL5593028.1"
                     /translation="MVQLFKLFRIRFLLLNLISVLMLSGCTSRYADLVSIKNLALAEL
                     NPQLRFEQEAMVVRLSQVLEEAPLTPSEQADLYFERGVIYDSLGLWSLARYDFAQAIS
                     LNQRMAAAYNYMGLYLLLEGDYDSSIDAFNAVLELDREYSYTYLNRGLAFYYSGRYSE
                     AQRDLLHFYEEDKKDPYRALWLYFNELEFTPTEAKNNLQKRANNLSSDYWGTNIVNYF
                     LGKLNLAQVRAIMERDAKGNSSQYAEILTETYFYLAKQQLKLDHKDEAISLFRLALAN
                     QVFNFVEYRFALFELSQIRGMTQTTPVVDKE"
     gene            complement(16180..18330)
                     /gene="pnp"
                     /locus_tag="PXE26_000412"
     CDS             complement(16180..18330)
                     /gene="pnp"
                     /locus_tag="PXE26_000412"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HDL5593029.1"
                     /translation="MTPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVV
                     AKKDVKEGQDFFPLTVDYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLF
                     PEGFFNEIQVIATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQF
                     VLNPTTSEQKISRLDLVVSGTDKAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENI
                     KEFVKEAGKPRWDWVAPEPNTDLINKVKALAETRLGDAYRIVEKQVRYEQIDAIKAEV
                     IAQLTAEDETVSEGTIIDIITALESQIVRSRIIAGEPRIDGRTVDTVRALDICTSVLP
                     RTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSDRFLFHYNFPPYSVGETGRI
                     GSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITESNGSSSMASVCGASLALM
                     DAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDI
                     KIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRADISDYAPRIHTMKIDPKKIKD
                     VIGKGGATIRALTEETNTSIDIDDDGTVKIAATDGNAAKAVMARIEEIVAEVEVNQIY
                     NGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLTVGQEVQVKVVEIDRQG
                     RIRLTMKDINNTNEANAEETVAENVVETEQENNF"
     gene            complement(18592..19872)
                     /gene="phoR"
                     /locus_tag="PXE26_000413"
     CDS             complement(18592..19872)
                     /gene="phoR"
                     /locus_tag="PXE26_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor histidine kinase PhoR"
                     /protein_id="HDL5593030.1"
                     /translation="MKVKLSLKHFLLELLLAAAVAGVFNLFFPAYFFWFSFCLLVLLI
                     WHHHTESSLLQLLRPNEQSGRSKVTTMEHLSQSAAFYHERLRQDKIKTLRLLSKLNKH
                     IQYLPDAIIICQENGEISWCNNVAQELFEFYWDKKSNKSIFNVIFYPEFKSYFRQQRH
                     HRPLVLLTHNKRYIELNLNRYDSNSRLIVARDVTSFVRLMHSRQTFLANMNHELRTPL
                     TILQGYLEMLENEPHNMALQQKALNAMKEQSQRMTNLLRQLSLLVKIEHSNDSEHNEV
                     QMSALISAIQKNTEILSQNQQILFDIEPNLTVWGDQEQLQSAVSNLIYNAIRHAGEGV
                     TIQICCQRDNQEPNTAIFSVQDDGIGIDAHHITHLTERFYRVDESRSNKTGGSGLGLA
                     IVKHALEQHHSTLEIESEAGKGSRFSFKLPLIKK"
     gene            complement(19875..20561)
                     /gene="phoB"
                     /locus_tag="PXE26_000414"
     CDS             complement(19875..20561)
                     /gene="phoB"
                     /locus_tag="PXE26_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006996031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon transcriptional regulator
                     PhoB"
                     /protein_id="HDL5593031.1"
                     /translation="MNNKILIVEDERAIREMLSLYLSKQYQVIEAEDYQSAINKLGEK
                     PELILLDWMMPGRSGIHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYIT
                     KPFSPQVLLARIEAVWRRSYDPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLL
                     HFLMTHPEKVYRREQLLDFIWGNDIYVEDRTVDSYIRRLRKSLEPYGFERYIQTVRGS
                     GYRFSNHFQD"
     gene            complement(20645..21415)
                     /gene="pstB"
                     /locus_tag="PXE26_000415"
     CDS             complement(20645..21415)
                     /gene="pstB"
                     /locus_tag="PXE26_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HDL5593032.1"
                     /translation="MLPTDLETKLHINNLNFYYGDFHALKNINMRIAKNKVTAFIGPS
                     GCGKSTLLRTLNRMFELYPNQRATGEINLDGENLLTSDTDISIIRAKVGMVFQKPTPF
                     PMSIYDNVAFGIRLFEKLPKSELNDRVEWALTKAALWNEVKHKLNQNGDSLSGGQQQR
                     LCIARGIAVKPEVLLLDEPCSALDPISTMKIEELINELKHDYTVAIVTHNMQQAARCS
                     DYTAYMYLGELIEFGDTKQIFDKPKFRQTEDYIKGKMG"
     gene            complement(21425..22273)
                     /gene="pstA"
                     /locus_tag="PXE26_000416"
     CDS             complement(21425..22273)
                     /gene="pstA"
                     /locus_tag="PXE26_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005650601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HDL5593033.1"
                     /translation="MKNYQNRRFYCRKIKNVLMLSLAYSAVLFGLFWLVWIIVTLLQK
                     GIPALSWELFTRPTPAPNETGGLRNAIVGSILIVSTATLIATPIGILAGTYLSEYGRY
                     TKLAKFTRFLNDVLLSAPSIIIGLFIYAIYVAQVKHYSGWAGSLALAVLVIPIVVRTT
                     DSMLNLVPNNLREAAAALGCPRWRVITMISYRAARSGIITGVLLAVARISGETAPLLF
                     TALSNQFASLDMNAPMANLPVVIYQYAASPFADWNTLAWAGAMLITLFVLSLNIITRL
                     YFSKTK"
     gene            complement(22270..23229)
                     /gene="pstC"
                     /locus_tag="PXE26_000417"
     CDS             complement(22270..23229)
                     /gene="pstC"
                     /locus_tag="PXE26_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HDL5593034.1"
                     /translation="MHKHKIDNKCLNHPWVEGLFHHTTRFFALLVFALLVVVLVSLLL
                     GSWEALSRFGVSFLWENEWNPVNDRYGALVPIIGTLISAGIALVIAVPVSFGIATFLT
                     ELAPQWLKRPVGTAVEMLAAIPSIIYGMWGLFVFVPLFQEYVQPYLIDTFGQLPFIGM
                     LFSGAPFGIGLFSAGLVLAIMIIPFIASIMRDVFSVVPPLLKESAYGLGSTTWEVIWK
                     VVLPYTKTGVIGAIMLGLGRALGETMAVTFVIGNAFMLPDSVFSPSTSIASAIANEFN
                     EAGGLQKSALMSLGLILFLITSIVLAASRLLIARMGKQEGKRE"
     gene            complement(23310..24347)
                     /gene="pstS"
                     /locus_tag="PXE26_000418"
     CDS             complement(23310..24347)
                     /gene="pstS"
                     /locus_tag="PXE26_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005756281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HDL5593035.1"
                     /translation="MAKRFKLLTVLGISFSLSVAANAQTITGAGASFPYPIYAKWAGL
                     YEKETGNKINYQSIGSGGGQQQIIAKTIDFGASDDPMKGETLAEHKLLQFPAIIGGTV
                     PVVNIPELKSGELKLSGKVLADIFLGKITQWNDPAIVALNQDIALPAKTILVVRRSDG
                     SGTTFGWTNYLSKVSAEWKEKVGEGKSVKWPVGQGGKGNEGVAAYVKQLKYSIGYVEY
                     AYAKQNALAWVSMQNADGKFVQPSRETFAAAAANADWSQTAGMGVILTNEAGEKAWPI
                     TAASFILIHQHSDKPEQTKGVFKFFDWAFKHGKDAAAELDYVPLPDNVVEKIQTQWKT
                     EVKDGQGNSLY"
     gene            24532..26778
                     /gene="parC"
                     /locus_tag="PXE26_000419"
     CDS             24532..26778
                     /gene="parC"
                     /locus_tag="PXE26_000419"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HDL5593036.1"
                     /translation="MTTEINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLK
                     PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRY
                     PLVDGQGNWGAPDDPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPK
                     YLPARLPHILLNGTMGIAVGMATDIPPHNINELADASVMLLDNPKATLDDVLSVVQGP
                     DYPTEAEIITPKAEIARMYEQGRGSIKMRAVWKKEEGEIVISALPHQASPSKIIEQVA
                     TQMRNKKLPMVDDIRDESDHENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNM
                     NMIGLDGKPAVKNLLTILNEWLSFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNID
                     EVIEIIRNEDEPKAELMARFNLTDVQAEAILNLRLRHLAKLEEHQLQAEKSELEKERD
                     ELQLILGSERRLNSLIKKEIQADAKAFASPRRSPLVERAESKAIAESDLTPTEDVTVI
                     LSEKGWVRCAKGHDIDVQALSHRAGDGYLAHARGRSNQPVVFLDSTGRAYALDPTSLP
                     SARSQGEPLTGKITLPEGAVVQQVLMASPETKVLMASDSGYGFICTFADLVSRNKAGK
                     AVISLTENAKVLPPQLLENDENLSLVAMSNVGRMLVFPVSELPQLSKGKGNKIINISA
                     AAAKSGDEYLARLLVIKPTNSLVFVSGKRKITLKPSDVDNYRGERARKGSQLVRGLST
                     NSTVEIVE"
     gene            complement(26849..28201)
                     /gene="lysC"
                     /locus_tag="PXE26_000420"
     CDS             complement(26849..28201)
                     /gene="lysC"
                     /locus_tag="PXE26_000420"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-sensitive aspartokinase 3"
                     /protein_id="HDL5593037.1"
                     /translation="MSHLSVAKFGGTSVANFDAMTSSANIVIADANTRVVVLSASAGV
                     TNYLVELANGCEKEHRDEVIAAVRQIQYNIIEKLQHQDAVKAEIDELLERIETLAESA
                     SLATSAALSDELISHGEMMSTKIFTQLLIERGHPAVWVDVRDVVATNSHYGKAAPNDE
                     KTQQQSDNVIKPLIASGKIVITQGFIGRDDEGKTTTLGRGGSDYSAALLAEVLNANDV
                     LIWTDVPGIYTTDPRVVPNAQRIDTMAFNEAAEMATFGAKVLHPATLLPAVRSNIPVY
                     VGSSKAPEQGGTWVTRDPQPRPTFRAIALRRNQILLTLSSLSMLHAQGFLANVFAILA
                     KHKISVDVITTSEVSVALTLDKTGSASSGADMLSAELLDELNAYCNVQVESDLALVAI
                     IGNNLHAQSGVAKKLFHTLENYNIRLISYGASSNNVCTLVKNAEADDVVRSLHKGLFE
                     "
BASE COUNT         8436 a         5522 c         6308 g         7940 t
ORIGIN      
        1 ttaattgaga gtttagcatc taaaaatcca agtttaccaa ttaaaatggt ggagcattgt
       61 gtaaaagagc ttttagagca gttaacggct actttagaag aaggtgaaag gatagaagta
      121 agaggatttg gtagtttttc tctacattat cggcagccgc gtttaggtcg caatcccaaa
      181 acaggagaaa gtgttctttt aggcgcgaaa tatgtaccac attttaaagc tggtaaagat
      241 ctaaaagaga gagttgatct gctttaagtc ttattaattc aataatcgta gtaaggagat
      301 tatatgatta agtatatttt aggtatttta attgtgattg cagttattat tgtcgctgtt
      361 acgattggag ccaataatga tcaacttatc acctttaact atatttttgc tcagagtgaa
      421 ttacgcttat caacgttagt tgcgatttta tttggcttag gattgattct tggttggttg
      481 gtaacgggta ttttttactt aaaaattaag tttcaaaacg ttgctttaaa tcgtcgtgta
      541 aagcgccaag ctcagcaaat aactgaatta acgactccaa aggctgaata atcaatgctt
      601 gaattattgt tccttttatt gcctattgca gcactatatg gctggtatat gggacaacgt
      661 agtgcaaaga aggatcaaga aaccgctagt aataagttct ctcgtgagta tgttacgggg
      721 ttaaattttc ttttatctaa tcagcaggaa aaggcggtgg accttttcct ctctatgtta
      781 caaaaacaag aatccgaaaa tcatattgca tctgaatccc aatttgaagc ggagttaacc
      841 ctaggtaatc ttttccgttc aagaggtgag gtagatcgtg ccttacgtat tcaccaaaca
      901 ttagtgaata gccctcatta ttcatttgat caaaaattat tagcaaaaca gcaattagct
      961 aaagacttta tggttgcagg tttctatgac cgtgcagaaa attattacat ttcattagtt
     1021 gatgaacctg agtttgctaa atattcttta tctcagcttg ctgttattta ccaaaaaacc
     1081 agagaatgga aaaaagcgat taatgttaca gaaaaacggc ttcgaataga gccggatgca
     1141 gataaaatac cgctttcaca tttttattgt gaatatgcgc aaggggttaa atttgatgat
     1201 aaagcggcat ttattgaatc gttaaataaa gcgttagaat attatcctca atccacacgc
     1261 gcttctataa tattaggtga tttctattta gaagagggag aatatctaag agcattaagc
     1321 tatttcgaac agattcttgt gcaagaccct gattatatta gcgaagtgct tggacgaatt
     1381 aagcaaagct atatggctct tgaggactta aatggctatg agttatttct cattcgagca
     1441 aaccgagtaa aacataatag tagtgtagat attgctttaa ctgaatttat tgaagaaaaa
     1501 gatggtatca atgctgcaca ttctaaacta taccagcagt tgagtactta tccgaattta
     1561 attacttttc accgctttat tcgctatcaa gcagattttg cggaggaagg aaatggtaag
     1621 gaaagcttag ttttattaca taatatggtg ggaaatcaga taaaacgcag cttccaatat
     1681 cgctgtttaa attgtggtta tcaaagttat cgcttaatgt ggcaatgtcc ttcttgtaat
     1741 caatgggaaa aaattaagcc ggtacaaagt atcgaaggta ttattcaata aagaaagaat
     1801 ctgaggaatt gaaaatgaac aataaagtaa ttgttgcgtt agactatgaa actgaacgtg
     1861 aagcattaga atttgtggat ttggtcgatc cgtcgctttg tcgtttaaaa gtaggcaaag
     1921 aaatgtttac aaccttaggc acaaattttg tcaaacaatt acacgaacgt aaatttgatg
     1981 tattccttga tttaaaatat catgatattc caaatacggt tgctcgagca gtacgttctg
     2041 ctgctgatct tggtgtgtgg atggttgact tgcatgcttc tggtggttta gccatgatgg
     2101 aagaggcaaa gaaaattttg gagccttatg gcaaagaggc accattatta attgcagtga
     2161 cggttctaac cagtatggaa gatttggatt tgcttcaaat aggtattaat gcttcgccga
     2221 tggaacaagt tattcgttta gcacatttag cacaacgggc tggtttagat ggcgtggtat
     2281 gttctccaca agaagttgag gtattacgta cccattgtgg tcaagatttt aaattagtga
     2341 ccccaggaat ccggccaaaa ggaacagatt ttggggatca acgccgagtg atgacaccca
     2401 aacaagcagt agaaacaggc tcagattttt tggttattgg tcgtcctatt acccaagctc
     2461 aagatccgct tgcggtatta aaatctatta accaatctat cagttaattc attgcatttt
     2521 taatgaaggc ggaaaaattt ccgccttttt taatcaaaca agcggttatt tttgaggaaa
     2581 aatttgtaaa tgacattagt ctattcaacg gaaacaggca gaataaagtc cgaagtaata
     2641 aaagaagaac gccctaaagg ggatggtatt gtgcgtattc aacgtcaaac aagcggtaga
     2701 aaggggaaag gtgtttgcct tatcaccggt cttgatttag aggataaagc cttaaattct
     2761 cttgcttcag agcttaaacg taaattgggt tgtggtggct catttaaaga tggagtaatt
     2821 gaaatccagg gcgataatcg aggattcatt aagcaaatct tagaacagaa aggtttcaaa
     2881 gtgaaactgg caggtggttg agttttaaac aattatcagc tggcagtttt taaataactt
     2941 cattttattt gaaacttcat tcctactttt ctgcctaaaa ctcacgatta aggagaaaaa
     3001 ctaatgtgga agaaaacgtt gattgctgta tttttagcaa gccaatatgc ttttgcggta
     3061 ggaaccggga aagaaccatc aaaaagttat actgaaacag aattaaaaca attaaaaaat
     3121 gattggttag cgatttatca aaaagagcta cagtatgcag aaaatttgcg tttaaaacag
     3181 agagaaaatt ttcagcaaat taattatttg gcagatgcag cgattagtca gaagaattta
     3241 tcactttcaa cggagcagat aattcagcgt ttattactaa ccttagcggg ttatccgttg
     3301 gagatgaaag ctgaatggaa gctgctaaat gctaaaataa cgttaaaaca agccacagaa
     3361 agtgaagtta aagcatttat ttcaaaatat cctgattctt tgtatcaaag gcagttacag
     3421 aacttgatgt ttgagctgct ctatcgtgaa cagaaatttc cggagttact ggaatatgct
     3481 caaaatgtaa aacagagtag tcttgccgac caatgccgtt tattttctgc tcgttatgaa
     3541 ctggcagcaa gtaaagctca aatcaatccg gaagtttctc aagtaactga gcaaaaagca
     3601 gaaaatgcag aactgcttgc tttggtgcaa gagtttgatc gcttttggct tgctacgccg
     3661 aaattaactt ctgattgtgc gaatttagaa agttattggc gggatcaggg gcttaaaacc
     3721 gatgaaaaaa tgcgtttgaa agcggtcgaa ttaattaaac aaaatgcaaa tgcagaattg
     3781 gcgaatttgg cggcaaatgt aaataatgag aatttgaaaa tctggctatc ttccgttgaa
     3841 aaggtagcga ataatccggc agatttgcaa aattttatcg aaaatcaacc gcttgattcc
     3901 ccattttatg ctgataataa agcgattatt cagcaactct ttgctaaata tgtgcgaact
     3961 ttatcggaaa atatggagaa cccgagtttc cagcagtatc aaacgtgggc agagaagtat
     4021 caactttcca gcgaggaaat caatggctgg aaaaatgctt ttatcactcg attttttgat
     4081 aacccagaac caacattcca attttggcgt gatgagcaaa tcaagttgct caagacagac
     4141 aatttaactg aacgccgttt acgaatggca atttggcaaa aagcagattt aaatgagtgg
     4201 ctggttctgc tatctcagca ggcgaaagaa aaagcagaat ggcgttattg ggctgcgaaa
     4261 gaggagaaaa acgaagcgaa gcgtaaagtt gattttgaaa gcttagctaa agagagaggc
     4321 ttttatgcta tgttggctgc tcaacaatta ggcattgttt accaaatccc gatgcttgaa
     4381 gtgcctgaat tgacacaagc acagcttgaa ttgtatgcaa accaattagc tcgtattcaa
     4441 gagttgcgag agctagggca gtttgaccag gcaagaaaaa tatggattga ctggataaaa
     4501 aacatcaagc cggaagcagg tgaaaataca ccaactaaaa tccagttagc cctgataaaa
     4561 tatgccaagg ataaaaattg gtatgatttg gcggtggaag gtacaattca aacaaaagcc
     4621 tttgattatc ttgatttgcg attaccgaat gcctattcgg attggttcga tttacatctg
     4681 caagataaaa aaatcagcaa aacgtttgct caggcgattg ctcgtcaaga aagtgcgtgg
     4741 aatgctcagg ctcaatcgca cgctaatgcg agagggctaa tgcaactgtt accgacaaca
     4801 gcacaaaaaa ccgctaaaga taacggttta accttcaaag atggcaatga tctctttcaa
     4861 ccgtttaaca atattatgtt aggcacaacc catttaatgg agttaaacga aaaatatccg
     4921 aataatcgga ttctgattgc ctctgcttat aatgcaggag cagggcgtgt tgagcagtgg
     4981 ctgaaacgta gtaacgggca gttagcaatg gatgaattta ttgccagtat cccgttttat
     5041 gaaaccagag gctatgtaca aaatgtgctg gcgtatgact actattatca aatgctctat
     5101 agcgatataa atgataaaaa tggattaaaa atgttctatc aagaggaatt aacaagaaaa
     5161 tattaaaaaa tgcttgtgtt tttgtgtaga accgctataa tgcaccccat cagacgcggg
     5221 gtggagcagc ttggtagctc gtcgggctca taacccgaag gtcgttggtt caaatccggc
     5281 ccccgcaacc agttttaagc tcacagcttt ggttaaagtt gtgagttttg ttttatatgc
     5341 tgtagcaaat ttgcaaaaaa tttggcaaaa aagaccgctt gttgtggttg ctacagcaaa
     5401 aaacaaaccg cttaaagccc cacggtttcc cgtctggggc ttttttgcgg aaattggtac
     5461 agcattaacg tatcaaagct ggtttatccg gcttttttta tatttggaga ttatgacttg
     5521 gcaactttag aacaaaaatt agaagattta gtgctcgatt ctattgaagc attaggcttt
     5581 gaattagtcg gcattgaatg ccaacgtgca ggccgttttt taacggtgcg tttatatatt
     5641 gataaagaag gtggcgtgac gattgatgat tgtagcgatg tcagccgcca agtgagtgcg
     5701 atttttgatg tggaagatcc gattgccgat aaatataact tagaggtttc ttcaccaggg
     5761 ttagatcgtc cattatttac cgttgcccac tatgagcgtt ttatcgggca agatgtagtg
     5821 attcatttac gcattccgat gttcgatcgc cgtaaatggc aaggtaaaat caaacaagta
     5881 gaaggtgatt tcatcacttt aacggtagaa aatgaagatc gccagttcgc atttggcaat
     5941 attcaaaaag caaatttagt tccggttttt aatttttaag ataaaggtaa actgacaaaa
     6001 tgagtaaaga gattttatta gctgcggaag cagtttcaaa cgaaaagcaa ttaccaaaag
     6061 aggcaatttt tgaagcctta gaaaccgctt taaccattgc aaccaaaaag agccgtgatt
     6121 tagatattga cgtgcgtgtg gtggtagatc gtaaaaccgg tgatttccaa actttccgtc
     6181 gttgggctgt ggttgaaaat gtgaataata tgacccgtga aatcagctta gaagcggcac
     6241 aatttgaaga tccaaacgta caattaggcg attttattga agatgaagta gagtctatcg
     6301 agttcggtcg tgtggcgatt cagacttttg gtcaggtagt caaaaccaaa attcgtgaag
     6361 cggagaagac gaaaatcatt gatgaattcc gttcggattt aggcaaaatt attcttgcca
     6421 ctgtgaaaaa agtaacccgt gataatattt tccttgagtt acaaggtaaa tcagaagata
     6481 tcaaaggcga agcggtcatt gtgcgtgaag atatgatccc acgtgaaaac ttccgcccgg
     6541 gtgaccgtgt gcgtggtgtg ttatacgaaa tcaagcctga atcaaaagga cctcagcttt
     6601 tcgttacccg tgctaaaccg gtgatgttag aagagctatt caaattggaa gtgcctgaaa
     6661 ttggcgaagg cgtaattgag atcaaaggtt cagcccgtga tgtcggctct cgtgcaaaaa
     6721 ttgccgtgaa aacccacgat aaacgtattg acccggtagg ggcttgtgtg ggtatgcgtg
     6781 gtgctcgtgt tcaagctatc agcaatgaat taggcggcga gcgtgtggat atcgtacttt
     6841 gggacgaaaa tccggctcaa tttgtgatta atgcaatggc tccggcagat gtaagctcta
     6901 ttgtgattaa cgatgaaact cactcaatgg atattgcggt tgaagcgaaa aatctggctc
     6961 aagctatcgg tcgtaacggt caaaacgtgc gtttggcgac acaattaact ggttgggcat
     7021 taaatgtaat gaccgttgaa gagctaacga agaagagcga agaagaagat ggtaaagtca
     7081 tcaatttatt aacttctgct ttagaaattg atgaagaatt tgctcaagtt ttaattgaag
     7141 agggctttac gtctcttgaa gcgattgctt atgtgccggt tgatacttta acggcgattg
     7201 acggtttaga agatgaagat ttagtcgaag aattacaatc tcgtgccaaa aatgcgatca
     7261 cgaaaaaagc gttagaagaa gagaagttat taaaatcagc tcaaattgaa gaaaaattat
     7321 taacgcttga aggtatggat cgccatatcg cattcaaatt agctgaaaaa cagattacga
     7381 ctcttgaaga acttgcagag caaggtgttg atgatttagc cgatattgaa gaactttcag
     7441 aagagaaagc tggcgagcta attatggcag cacgccaaat ttgttggttc aactaagcaa
     7501 agaggataat aaaatgacag aagagaaaaa aacactttcg cttggtggcg ctcgcaaagc
     7561 gagtaaagtg aatacaacca caaccagtgg taaagtaaaa gcggttgaag taaaagagaa
     7621 aaaaccgaaa attgatgcaa aagcattgca agaaaaagca gcaaaagaag ctgccgcagc
     7681 gaaagctaga gctgaaaaag aagcagctga aaagttagcc aaagaaaaag ccgaagctga
     7741 agctaaagag aaagctgcaa aaaaagcagc agaatcgacc gctagtaaac cgatttctgt
     7801 gccggtaatg ccaagcagca aagcaaaaga agaaaaaccg aaagcacaac aggtacagcc
     7861 aaaacaagag aaagcggttg atcctgaaaa agaagctaaa cgcaaagaag aagctgagtt
     7921 acgccgtaag caagaggaat tagctcagca aaaagcggaa atggaggcaa aacgtgctgc
     7981 agaaaatgcc cgccgtttag cagaaattgc tcgtgaagaa gcggaagata acggcaacga
     8041 agattttgat gatgagcgtt ttacttcttc ttatgctaga gaggctgagc gtgataatga
     8101 ccgccgtagt gagggaaatc gtggtcgtaa cggcaaaggc aatgtggcta aagcgaaaaa
     8161 aggcggacgt gaagaggata aaaacgaacg cagtgcagat cgtcgcaacc ataaagaagt
     8221 aaaaggcaaa ggtaaacaag gtaagaaagg tgcagcttta caacaagcct ttaccaaacc
     8281 agctcaagtt gttaaagctg atgtggtgat tggtgaaact atcactgtgg ctgaattggc
     8341 taataaaatg gcagtgaaag cgactgaaat catcaaaatg atgatgaaaa tgggtgaaat
     8401 ggtgacgatc aaccaagtta tcgaccaaga aaccgcacaa ttagtggcgg aagaacttgg
     8461 gcataaagtg attttgcgta aagaaaatga gttagaagaa gcggttttag aagatcgtga
     8521 tactcacgca gaaaaagtaa cccgtgcacc ggtagtgact attatgggcc acgttgacca
     8581 cggtaaaacc tcgttacttg actacattcg taaagccaaa gtggcggcag gtgaagcagg
     8641 tggtattacc cagcacattg gtgcatacca cgttgaaacc gatgacggca agatgatcac
     8701 tttcttagat accccggggc atgcagcctt tacctcaatg cgtgcgcgtg gtgcgaaagc
     8761 aactgacatc gttgttctcg tcgttgcggc tgatgacggt gtaatgccac aaactattga
     8821 agctatccag cacgccaaag cagcgggtgc gccattagtg gtagcggtga ataaaattga
     8881 taaaccggaa gcgaaccctg accgtgtaga acaagagtta ctacaacacg aggttatttc
     8941 tgagaaattc ggtggcgatg tgcaattcgt gccggtatct gcgaaaaaag gtatggggat
     9001 cgatgattta ctagaagcca ttattctgca atccgaagtg cttgaattaa ccgcagtaaa
     9061 agacggtatg gcaagcggcg tggtaatcga atcttactta gataaaggtc gtggccctgt
     9121 ggcaactatc ttggttcaat ccggtacgct aaacaaaggc gacattgttc tatgtggttt
     9181 tgaatacgga cgtgtgcgtg caatgcgtga tgaaaacggt aaagatgttg aatcagcagg
     9241 tccgtctatt ccggtagaag tattaggctt atcaggcgtg cctgctgccg gtgatgaggc
     9301 aaccgtcgtg cgtgatgaga agaaagcccg agaagtggct ctttatcgcc aaggtaaatt
     9361 ccgtgaagta aaactggctc gtcagcaaaa agctaaactg gaaaatatgt tcagtaatat
     9421 ggcagccggt gatgtggcag aattgaacat cattgttaaa gcagacgtac aaggctcggt
     9481 agaagcgatc agccaatcct taatggaact ttcaaccgat gaggtgaaag tgaaaattgt
     9541 tggttcaggt gtaggtggta ttaccgaaac tgatgcaacc ttagccgcag cttctaatgc
     9601 tattatggtc ggctttaacg tgcgtgccga tgcctctgcc cgccgtgtga ttgaaaacga
     9661 aaatatcgat ttacgttact actccatcat ttatgagcta ttaaatgacg tgaaagcagc
     9721 aatgagcggt atgttacagc ctgaattcaa acaagaaatt atcggcttgg cagaagtgcg
     9781 cgatgtgttc cgccacccga aatttggggc gattgccggt tgtatggtga cagaaggtat
     9841 cgttaaacgt aacaacccaa tccgtgttct gcgtgataac gtagtaattt ttgaaggcga
     9901 gttagaatct ctccgccgtt tcaaagatga cgtatctgag gtgcgtaacg gtatggaatg
     9961 tggtatcggc gttaaaaact acaacgacgt aaaagttggc gaccaaatcg aagtgtttga
    10021 agtggttgaa gtaaaacgta ctatttagcc taattttgtg taggggcgta ttgcatacgc
    10081 cctttgtatt ttttagggcg tgaagcatca cgcccctata aaagagaaaa atatgtccag
    10141 agaatttaaa cgtagtgacc gtgtggcaca ggagctacaa aaagaagtgg cggtgatttt
    10201 acaacgtgag gtaaaagatc ctcgcattgg tatggtgact gtttctgatg tggaagtatc
    10261 aagagatttg gcgtatgcca aaatttttgt gactttctta tttgataacg atgctgaagc
    10321 tattaagcaa ggtatgcaag gcttggagaa agcaagcccc tatattcgaa cccttttagg
    10381 taaagcaatg cgtttgcgta ttgtgcctga actgcgtttt atctacgatg aatcgctagt
    10441 cgaaggtatg cgtatgtcta accttgtgtc tagtgtaatc aaaaatgacg aagaaaaaca
    10501 taaagaggac taattgtgtc tagacctcgc aaacgtggcc gtgatattca cggcgttttc
    10561 ttattagata aaccacaagg aatgtcttca aacgatattc tgcaaaaggt aaagcgaatt
    10621 ttccaagcaa ataaagccgg acataccggg gcgttagacc ctctcgcaac cggaatgctg
    10681 ccgatctgtt taggtgaagc gaccaaattt tcgcaatttt tgttggattc ggataaacgt
    10741 tatctcgtca ccgcaaaatt aggcgagcga accgatactt cagatgcgga agggcaagtg
    10801 gtggaaacca aagcagttgc agtgacaaaa tctcaaattt tggctgcttt ggagaaattt
    10861 agaggtgata ttttgcaagt gccgacaatg ttttcggcct taaaacacaa cggcaaaccc
    10921 ttgtatgaat atgcccgagc agggattacg gtggagcgtg aggctcgccc gattacgatt
    10981 tttgaactaa atttcattga atacaaggct ccatttttaa cccttgaggt gcattgttct
    11041 aaaggtactt atatccgaac tttggtcgat gatttaggcg aagagttggg ctgtggtgca
    11101 cacgttacga tgctacgccg tacagcagtg gcagattatc cgattgaaaa aatgatgagc
    11161 tatgcagatt tgcaaaattt agccgaaaat caaccgcttg cagagttaga ccagcactta
    11221 ttgccgatgg atacggcagt ttctgcatta gcaaaaataa atttaagttc agagcaaact
    11281 aaagcggtgg gttttggtca gagaattaga tttgataatc tgaaccaact ttatggtttg
    11341 gtacgtttat attcagaaga tgaacaattt ctcggtgtgg cagaaatcac caatgatact
    11401 gtgattcgtc ctaaccgaat gattaactta acggaataag aatgaaatcg ataattttta
    11461 ccttaccttt agcgattatc actttagcct tagccggttg ttcaagtgat aatcaagaaa
    11521 gttatgccgg cttaaactta gatgctaaat acagtaaatc tcgctcggtc agtcatttta
    11581 atgattatgt gcattttctg aaacagaagg cagcaggggc aggagtgtct gcaaaaacct
    11641 taaatgctca gaaattcatt cattacaacg ccagagcggt gcagttagat caacagcaag
    11701 ctgcacgaag acgtgacccg aatgtaccgc ctccgccacc aaatccaagt tttaaacaaa
    11761 gtattaactc aagcgaaggt ggatcaggca agtgaacgtt ggtatgaata taatagccag
    11821 cttacccatg ccagccaaaa atatggggta caaaaagagt atattttggc actttgggga
    11881 atggagagca gctttgggcg taaccaaggg gattttgatg tactttcggt gttggcaacc
    11941 ctcgcctttg atggtcgccg tgagaagtta tttacgcaag aatttgtgaa tgcgatgaaa
    12001 atgctcgatg acggcacaat taaacgctat gaattgcttg gatcttgggc aggagcgatg
    12061 ggacaaactc aatttatgcc aacttcttac ttaacctatg cagctgatgg caataatgac
    12121 ggtaaaaaag atatttggga gaatgaagcc gatgcatttg cctcgattgc caattatctt
    12181 tcaacagtag gttgggataa tcaactacct tggggtgttg aggttaaatt agcttcaccg
    12241 atggatttaa gtttcgccgg tcttgaaacc aacaaagcga aaacattggc ggaatggcaa
    12301 gccttaggta tttatttagc ttatccgaat ggacaagaat cggcaaaatt agctcaatta
    12361 cacggcaaag aggtttggtt gattcgtccg gataaagaag cgggaagagc gtttttagtt
    12421 tctaataatt tccgtacttt aatggattgg aataaatcga ataaccttgg tatcagtatc
    12481 ggaaaatttg ccgatcgaat tttagcttca gttggtcaat aatcgaataa aagcatagta
    12541 gcaaagccta tctatgcttt tattttatca aagcgtcgcc tttcttctgc aaacgacgtt
    12601 gcttaaaaaa atcactgatc ttttggctac attctctgcc caatacattg ccatgcactt
    12661 ctaagaaatg gttcatttta taatcttcaa acagatgata gcgtgaacct accgcacctg
    12721 ttttataatc acttgcccca aaaaccaatc gcttaatccg actatgtaaa attgcaccgg
    12781 cacacattgg gcaaggctcg agcgtaacat aaagggtaca atctaacaga cggtaattcc
    12841 ctaaagtttg tcctgcttga cgaattgcct gcatttcagc gtgtgcagat ggatcacaga
    12901 gttgaatggt ttggttccag cctctgccga taatctgttg gtttttatca accagtactg
    12961 ccccaaccgg gatttcgcct tttgcttcgg ctaaatcagc gagatcaagg gcgtattgca
    13021 taaaggcgat gtcttgctcg gagatctgaa gtggacaaga agtttgattt ggtttgataa
    13081 acatagttgc aaaaaattga gtttttttga ccgcttgtaa aatgccccac gagggtgggg
    13141 catcgcttac ttcgcttagt gtcgtttagt cacgacgacc acgtttttca ctgaaacgtt
    13201 tttctttaaa gccacctttg cggtctttat tgaaaccccc gtctcggcga ccaccacgat
    13261 cattacgatc gttaccacgg cgaccacgac cttcaaatgg atttgcatta cttgcactgt
    13321 ttgcagagcc aagtaatgtc atctgcattg gtttgcttaa tacacgtgct ttgtgagcga
    13381 aatgttgtac gagatgattt ggcattcctt gcggcaactc aatggttgag tatttatcat
    13441 aaagtttgat atgcccgatg taacggctgc tgatatcccc ctcgttggca atcgctccaa
    13501 caatatgacg aacttccaca ccgtcttcac gccccaattc aatgcggtat aaatccattg
    13561 ccacaccatt gttttcacgg tgttcacgac cgttacgacg atcgtttcgc tcattgcggt
    13621 cacgtccacg ttcagaacgg gcagcacgca caaccggatc cggtggcaga atcagttttt
    13681 gtttttcttg cagtaacatc atcatcgccg ctgctaattc ttcgtggtct tgatccgcag
    13741 taaataaatc ttccaacaat tcacgatatt tttctaaatc gtgatgttct aactgcttag
    13801 aaatgcgggc tttgaatttc tcacggcgtt tttccattaa aatttcgtgg tttggaatcg
    13861 ccacttcatt aattggtttt ttgattaaat tttcgatatt gcgtaataag cggcgttcac
    13921 gaggctcaac aaacagtaag gcacgacctg aacgaccggc acgaccggta cgtccgatgc
    13981 ggtgaacata agattcttct tctaacggaa tatcgtagtt aataaccaag ctgattcgct
    14041 caatatcaat accacgggca gcaacatcgg tggcgactaa aatatctaaa cgaccggagc
    14101 gtaatttatc taaggtttgc tcacgggctt gctgggtcat atcgccgttt aatgccgcag
    14161 tacggtagcc gttgcgttca cacaattcgg taatatcaat agtaccggtt ttggtgcggg
    14221 taaagatgat agcagcatca aattcttcta cttctaggaa acgcaataac gcatcgtttt
    14281 tacggaagcc gtttaccagc cagtagcttt gttcaatatc cggggctgaa cgctcggttg
    14341 ccttaatttt tacctcttgc ggatctttca taaaacgacg ggtaatacgg cgaatcggct
    14401 ccggcatggt ggcagagaag agagcagttt gatgtgtttc cggtaattca gccattaccg
    14461 tttcaacatc gtcaataaag cccatacgca gcatttcatc ggcttcatct aacacgatga
    14521 attttaattc ggataaatct aatgtgccac ggcggatatg gtcaagaata cgcccaggtg
    14581 tacccactac tacttgtgag ccttgtttta aagcacgtaa ttgaatgtcg taacgttgtc
    14641 caccataaac cgtcactaca cgaatgcctt tcatattttt tgcaaactgc tcacaagcat
    14701 cggctacttg aatcgcaagc tcacgggtgg gtgccatcac caacatttgc gggtggcgtt
    14761 gtgttgggtc aatttgtgcc aacagcggca gcgagaatgc ggcggtttta ccgctcccgg
    14821 tttgtgccat accaagcaca tcacgaccgg ctaataaatg aggaatacat tcttgttgaa
    14881 tgggtgatgg gtttacaaag cccatttcat ttacagcatc aaggattggt tgaggtaagc
    14941 ctaaatcggc gaaagttaaa gattcagttg tcataaaaaa ccatttgttt ggaacgcaca
    15001 aagcagaaaa tatcgactat ttttctgcac agccattaat gaaaattata ttgttgaaat
    15061 ttaggaagaa atgaaataac aaagcaagtg atgctttaaa aatcccctga gtataagcgg
    15121 ttaaatttac aaaatttttt gcgaaattaa ccgcttgtat tgtcctaatc tttccctatt
    15181 ctttatcaac aacgggagtc gtttgagtca taccacgaat ttgtgataac tcaaacaggg
    15241 caaaacgata ctcaacgaag ttaaacactt gatttgcaag agcaagacga aagaggctga
    15301 ttgcctcatc tttatgatct aatttgagtt gttgttttgc taagtagaaa tacgtttctg
    15361 tcagtatttc tgcatattgt gagctatttc ccttagcgtc acgttccatt atagcacgaa
    15421 cttgagctaa attgagcttc cctaaaaaat aatttacgat atttgttccc cagtaatccg
    15481 aagaaagatt attagctcgc ttttgtaaat tatttttagc ttctgttggt gtaaattcca
    15541 gctcattaaa atagagccat aatgctcgat aaggatcttt cttatcttct tcataaaaat
    15601 ggagaagatc acgctgggct tcagaatatc tgccgctata atagaaagcc aaacctcgat
    15661 tgagataggt gtagctatat tcccgatcta attccaatac ggcattaaac gcatcaatcg
    15721 aactgtcgta atcgccttcc agcagcagat acagccccat atagttataa gctgccgcca
    15781 tacgttgatt gagcgaaatg gcttgagcaa aatcataacg ggctaacgac cataaaccta
    15841 aactgtcgta aataacgcct ctttcaaaat agaggtctgc ttgctcagag ggcgttaatg
    15901 gggcttcttc caatacttgg ctgagtctta ccaccattgc ctcttgttca aagcgaagtt
    15961 gaggattaag ttctgccaat gctaagtttt taattgaaac caaatcggca taccgactgg
    16021 tacagccgct tagcattaaa acagaaatta aattcagtaa taagaaacgg attcgaaaca
    16081 acttaaaaag ttgtaccatt acagcatatc cctcaattaa ggaaaattaa aaactgaata
    16141 acggacactc aaagtccgtt attcgccttt attattgaac tagaaattat tttcttgttc
    16201 tgtttctacc acattttcag ctacagtttc ttctgcattt gcctcgttgg tattattgat
    16261 gtctttcatc gtcagacgaa tgcgtccttg acggtcaatt tctaccactt tcacttgtac
    16321 ttcttgacca acggttaagt agtccgctac acgctcaaca cgttcgttgg tgatttgtga
    16381 aatgtggact aaaccttctt tgccacctaa gatggaaacg aatgcaccga agtccaccac
    16441 acgggttact ttaccgttgt agatttggtt tacttccact tcggcaacga tctcttcaat
    16501 acgagccatt actgctttcg ctgcattgcc gtcagttgcc gcaattttca ccgtaccgtc
    16561 atcatcaatg tcgatagaag tattggtctc ttcggttaaa gcacgaattg ttgcaccgcc
    16621 tttaccaatc acatctttga ttttcttcgg atcgatcttc attgtgtgaa tgcgtggggc
    16681 atagtcagaa atatctgcac gaggtgccgg aatggcttgt tccattacac ctaaaatgtg
    16741 cattcttgca cctttagctt ggtttaaggc aatacgcata atttcagggg tgatcccttc
    16801 gattttgatg tccatttgca gcgcagtcac accggtacgg gttcccgcta ctttaaagtc
    16861 catatcgcct aagtggtctt catcacctaa gatgtcagaa agtaccacga atttctcgtc
    16921 ttctttcacg agccccattg cgataccggc aaccgctgct ttgattggca cacctgcgtc
    16981 catcaacgca agagacgcac cacacacaga tgccattgaa gaagaaccgt tagattcagt
    17041 gatttcagac accacacgca ctacatacgg gaactcttca gcggttggca tcacggctaa
    17101 tacgccacgt tttgctaaac gaccgtgacc gatttcacgg cgttttggcg agccgatacg
    17161 accggtttcg cccacagagt atggagggaa attgtagtgg aataagaaac ggtcagattt
    17221 ttcgccggtc aattcgtcaa tgatttgggc atcacgctct gtgcccaatg ttgctactgc
    17281 taatgcttgg gtttcgccac gggtgaaaag agcagaaccg tgggtgcgtg gtaacacact
    17341 ggtgcaaata tccaatgcac gcacggtatc caccgtacgg ccgtcaatgc gtggttcgcc
    17401 tgcaataata cggctacgca cgatttggct ctctaatgcg gtgatgatgt cgatgatagt
    17461 cccttcagaa acagtttcat cttctgcggt aagttgtgca atcacctctg ctttaatcgc
    17521 atcgatttgc tcgtaacgaa cttgtttttc tacgatacga taagcatcgc caaggcgtgt
    17581 ttctgctaat gcttttactt tgttgattaa atctgtattt ggctctggtg caacccaatc
    17641 ccaacgtggt ttgcccgctt ctttaacaaa ttctttgatg ttttcgatta caacctgttg
    17701 ttgctcgtgg ccgaacacca ccgccgctaa catttgctct tcggttaaga tatccgcttc
    17761 agattccacc atcaacacgg ctttgtctgt acctgaaacc actaaatcta agcggctgat
    17821 tttttgctcg ctggtggttg ggtttaatac gaattgatcg ttgataaaac cgacacgagc
    17881 cgcaccgatt ggaccgttaa acggcacgcc ggataatgaa agggcagccg atgcaccgat
    17941 catcgcaacc agatcaggac tgatttgtgg gtttaccgat actacggtcg caatcacttg
    18001 aatttcgtta aagaaacctt ctgggaaaag tggacgcaca ggacggtcga tcaagcgagc
    18061 gattaaggtt tcaccttcgc taggacgtcc ttcacgtttg aagaaaccgc ccggaatacg
    18121 accggctgcg taagtacgct cttgataatc tacggttaat gggaagaaat cttgcccttc
    18181 ttttacgtct tttttcgcta ctacggtaac aaatacggtt gtgtcgtcca tacttgccat
    18241 tactgctgcc gttgcttggc gtgcgatagc accggtttct aaggtcacgg tgtgctgacc
    18301 gtatttaaac tgttttacaa ttggagtcat tgaaattttc cttttaaaga atttactatt
    18361 attgtcgttt tatttctcta aattgcgact agcaaaaagg cttttaagta aaacattttt
    18421 gatagccgcc tctcaataac aagaaataaa acttgtctag tatagcgtga tttttataaa
    18481 aaatcgccta ttattttgat cttgcacctc agttataaag aaattcaaaa cttcagtgta
    18541 aaatggggat tagtttgtga aaagccttgt gaaaatagtt tgattgcatc gctatttttt
    18601 tattagaggt agtttaaaac taaatctgct tcctttaccg gcttcacttt caatttccag
    18661 tgtggaatgg tgctgttcaa gagcgtgttt gacaatagcc agacctaaac cgctaccgcc
    18721 ggttttgttg ctacgagatt cgtccacacg atagaaacgt tctgtcagat gggtaatatg
    18781 atgggcatcg ataccaatac cgtcatcttg cacgctgaaa atcgcagtat tcggctcttg
    18841 attatcacgt tgacaacata tttgaatggt aactccttca ccggcgtgcc gtattgcatt
    18901 gtaaattaaa tttgatacag cgctttggag ttgctcttga tctccccata ccgttaaatt
    18961 aggctcaata tcaaacagta tttgctgatt ttggcttaaa atctcggtat ttttttgtat
    19021 ggcggagatt aacgccgaca tctggacctc attgtgttcg gaatcattgg aatgctcgat
    19081 tttaaccaaa agtgagagtt ggcgaagcag gttagtcata cgttgacttt gctctttcat
    19141 cgcattgagc gctttttgct gtaatgccat attatgcggc tcgttttcca gcatttccaa
    19201 ataaccttgt aatatggtaa gaggtgttcg cagttcgtgg ttcatatttg ccaaaaaggt
    19261 ttgtcgtgag tgcataaggc ggacaaaaga ggttacatct cgtgcgacaa taagtctgga
    19321 gttactgtca tatcgattga gattcaattc aatatagcgt ttattatgag tcagcagtac
    19381 caatgggcga tggtgtcgtt gttggcggaa atagctttta aattcaggat aaaaaatcac
    19441 attaaaaatg cttttatttg attttttgtc ccaataaaac tcaaatagct cttgtgcaac
    19501 attattgcac caagaaatct ccccgttttc ttggcaaata atgatcgcat cgggtaagta
    19561 ttgaatatgc ttatttaatt ttgataacag acgtaaggtt ttgattttat cttggcgtaa
    19621 acgttcgtga tagaatgcgg cactttgaga taaatgctcc attgtcgtta cttttgacct
    19681 gccgctttgc tcattaggtc tgagtaactg aaggagagaa gattcggtgt ggtgatgcca
    19741 aataagtaga accagtaaac aaaaactaaa ccagaaaaaa taagcaggga aaaacagatt
    19801 gaatacgccg gcaacggctg ctgccagcaa aagttccaat aaaaagtgtt taagtgagag
    19861 cttaactttc attattagtc ctgaaaatgg ttggaaaaac ggtatcccga gccacgtacg
    19921 gtttgaatat aacgctcaaa accatagggt tcaagactct tacgcaatcg ccgaatataa
    19981 gagtctaccg tgcgatcctc aacataaata tcattacccc aaataaaatc aagcaactgt
    20041 tcacgacgat acactttttc agggtgagtc attaaaaagt gaagcagttt atattccgtg
    20101 ccgcttaatt tcacttcctg ttcggcaacc aaaacccgtt gtgcctgttg atcaagaatc
    20161 aatccgtcta tattgatgag attgcttggc ggatcatagc ttcgccgcca tactgcttca
    20221 atccgggcaa gcaacacctg tggtgaaaac ggtttggtaa tgtagtcgtc tgcaccggca
    20281 ttcagaccgg taatacagtc ttcttcgcta ctgcgggctg ttagcataat gattggaatt
    20341 ttttcggttt caggctgttt ttttaggtat ttaattaaat ggatacccga acgccccggc
    20401 atcatccaat ccagtaaaat aagctcgggt ttttcgccca gtttattgat agcactttgg
    20461 tagtcttccg cttcaattac ctgatattgt ttgctgagat agagacttag catttcacga
    20521 atagcacgtt cgtcttcaac gatcagaatt ttgttattca ttcttcctct ccgatgcggt
    20581 gtgacaagcg gtcgatttat cgcagaaatt tgcaaatttt ttactaaaac cgaccgcttg
    20641 cagattaccc cattttacct ttaatgtaat cttccgtctg ccggaatttt ggtttgtcga
    20701 aaatttgttt ggtatcaccg aattcaatca gctcgcctag atacatataa gcggtatagt
    20761 cagaacagcg ggctgcttgc tgcatattgt gggtaactat cgctaccgtg tagtcgtgct
    20821 tgagttcgtt gataagttct tcgattttca tagtcgaaat cgggtcaagt gcggagcagg
    20881 gctcatccag cagtaacacc tcgggtttca ctgcaatacc tcgtgcaata cagagccgtt
    20941 gctgttgccc gccggagaga ctgtcaccat tttggtttaa tttatgcttt acctcattcc
    21001 ataaagccgc tttggttaat gcccactcta cacgatcgtt tagctcggat ttcggcaatt
    21061 tttcaaacag acgaatacca aaagcaacat tatcgtaaat ggacatcggg aatggggtcg
    21121 gtttttggaa aaccataccg actttggctc gaataatcga aatatccgta tcggaggtga
    21181 gtagattctc tccatcaaga ttgatttccc ccgttgcacg ttgattcggg tagagctcaa
    21241 acattcggtt tagggttcgc agtaatgttg attttccaca accggaagga ccgataaatg
    21301 cggtcacttt atttttggca atacgcatat tgatattttt cagagcgtgg aaatcgccat
    21361 aataaaaatt gaggttgtta atatgtaatt ttgtctctaa atccgttggt aacatataga
    21421 gtccttattt tgttttgctg aaatacagac gagtgatgat attaagagaa agcacaaaca
    21481 gagtaataag cattgcacct gcccaagcca atgtattcca gtcagcgaac gggctggctg
    21541 cgtattgata aatcaccaca gggaggtttg ccattggtgc attcatatct aaagaggcaa
    21601 actggttgga taatgcggta aacaatagcg gtgcggtttc tccggaaata cgggcaacag
    21661 cgagcaacac gccggtaata atgccggagc gggcggcacg ataagagatc attgtaatta
    21721 ccctccatcg tgggcagccg agagccgcag ctgcttcacg cagattatta ggcacaagat
    21781 tgagcatact gtcggtagtt cgaacaacaa tcggaatcac taataccgcc aatgctaatg
    21841 agcctgccca gcctgaatag tgtttaacct gtgcgacata aatcgcataa ataaataagc
    21901 cgataataat agaaggagca gagagcaaca catcattcaa aaaacgggtg aattttgcca
    21961 atttggtata acgcccgtat tcgctcaagt aagtgccggc taaaataccg attggtgttg
    22021 caatcagtgt tgcggtactg acaatcagta tagagccgac aattgcatta cgtaatcctc
    22081 ctgtttcatt tggtgcagga gtcgggcggg taaacagttc ccaagacagt gcagggatac
    22141 ctttttggag taaagtaaca ataatccaga ccagccaaaa taagccaaat aatacagcgg
    22201 aataggcaag acttaacatc aagacatttt ttatttttcg gcaataaaag cgtcggtttt
    22261 ggtaattttt cattctcgtt ttccttcctg tttacccatt cgtgcgatta ataaacgtga
    22321 agcggctaaa acaatcgaag taataaggaa cagaattagc cctaggctca tcaacgctga
    22381 tttttgtaat ccgccggctt cattaaattc attggcgata gcagaagcga tggaggttga
    22441 aggggaaaat accgaatcag gtagcataaa ggcattaccg atcacaaagg taactgccat
    22501 tgtttcgcct aatgctcgac ctaacccgag cataattgca ccgattactc cggttttggt
    22561 gtaaggtagc acgactttcc aaataacttc ccaagtggtt gagcctaaac cgtaagcaga
    22621 ctctttcagt aaaggcggta caacactgaa aacatcacgc ataattgagg caataaaggg
    22681 aataatcata atcgccaata ccaagccggc actgaatagc ccgatcccga aaggagctcc
    22741 gctaaaaagc ataccgataa agggaagctg accaaatgta tctatcaaat acggttgcac
    22801 atattcttga aataagggta caaatacaaa cagcccccac ataccgtaaa taatagaggg
    22861 aatagccgct agcatttcta ccgctgtgcc gacagggcgt tttagccatt gcggtgcaag
    22921 ttcggttaag aaagtcgcaa tgccgaacga gaccggaacg gcaatgacta atgcaatgcc
    22981 ggcagaaatc aatgtgccga taatcggcac taatgcaccg tatcggtcat tcacagggtt
    23041 ccactcgttt tcccatagga atgatacccc gaatcggctt aatgcttccc aactgccaag
    23101 caataatgaa accagcacca ccaccaacaa ggcaaaaacc agcaaagcaa agaaacgggt
    23161 tgtgtgatga aataacccct ctacccaagg atggtttaag catttgttat caattttatg
    23221 tttatgcata gtgacaactc ttttgcaaaa tgttgtgaaa aaacgaccgc ttgttgttag
    23281 ttaagctcca tacaagcggt cgttttgcat tagtagagcg aatttccttg tccatcttta
    23341 acttccgttt tccattgagt ttggattttc tctactacat tatccggtag aggcacataa
    23401 tccagttcgg cagccgcatc tttaccgtgc ttaaatgccc agtcgaagaa tttaaatacc
    23461 cctttagttt gctctggttt gtcgctatgt tgatgaatca agataaaact ggcggcggta
    23521 atcggccagg ctttttctcc cgcttcgttg gttaaaataa cgcccatacc ggctgtttgg
    23581 ctccaatcgg cgttagcagc ggcagcagca aacgtttcac gggaaggctg aacaaattta
    23641 ccatctgcat tttgcataga aacccaagcc agagcatttt gtttagcata ggcatattct
    23701 acgtaaccaa tagaatactt gagctgtttc acataagctg cgacaccttc atttcctttt
    23761 ccgccttgtc cgaccggcca tttcaccgat tttccttcgc cgactttctc cttccattcg
    23821 gcagagactt tagaaagata gtttgtccaa ccgaaagttg tgcctgaacc gtctgagcgg
    23881 cgtacgacta aaattgtttt tgccggcagg gcgatatctt gattaagtgc gacaattgcc
    23941 ggatcgttcc attgtgtaat tttgcctagg aatatatcgg caagaacttt accggacagt
    24001 ttcagttcgc ccgatttaag ttcaggaata ttgacaaccg gtacagttcc cccaatgatg
    24061 gcgggaaatt gcaaaagttt gtgttctgct aatgtttcgc ctttcatcgg gtcatcagaa
    24121 gcaccgaaat caattgtttt ggcaataatt tgttgctgac cgccaccgga accgatagat
    24181 tggtaattga ttttattacc ggtctctttt tcatataaac ctgcccattt ggcgtagata
    24241 ggataaggga aagaagcacc ggctcctgtg atggtttgag catttgctgc gacagaaagt
    24301 gaaaaagaaa tgcctaaaac ggtaagtagt ttaaatcgtt tggcaatcat attgttctcc
    24361 ttaaagttag cgtgagttaa tttcacgtgc ttagtgtaga aaaagaatat gacaaaatga
    24421 tgacaatggt aaaaaaatca gaaaaaacga ccgcttgtgt ttcaggctag actaaacagg
    24481 ctaaatcgta gaaaatagcc ctcgtttttt taatataaat atcgataaaa aatgaccaca
    24541 gaaatcaatt atgaaggcat tgaacagatg ccgattaagc gttttaccga agatgcttac
    24601 ctcaattatt cgatgtatgt aattatggac cgggcattgc cgtttattgg cgatggcttg
    24661 aaaccggtgc aacgccgtat tatttatgcg atgtcggaac ttgggctaaa cgcctcggca
    24721 aagtataaaa aatcagcccg taccgtgggg gatgtattag gtaaattcca tccgcacggt
    24781 gatagtgcct gctatgaagc aatggtgcta atggctcaac cgttctctta ccgctatccg
    24841 ttagtggacg gacaaggcaa ctggggggct ccggacgatc cgaaatcctt cgctgcaatg
    24901 cgttataccg aatcgaaact gtctaaaatt gcagaaattt tattgggcga gttagggcaa
    24961 ggaacggtgg attatcagcc aaattttgat ggctcgttgg aagaaccgaa atatctgccg
    25021 gctcgtttac cgcatatttt gttgaatggc acgatgggga ttgcggtggg aatggcaacc
    25081 gatattccac cacacaatat taatgaattg gctgatgcca gtgtgatgtt gctggataac
    25141 ccgaaagcaa cgcttgatga tgtactaagc gtggtacaag ggccggatta cccgacagag
    25201 gctgaaatca tcacaccaaa agcggaaatt gccagaatgt atgagcaggg gcgtggttct
    25261 attaaaatgc gtgcggtgtg gaaaaaagaa gagggtgaaa ttgtgatttc agccttgccg
    25321 caccaagcct ctccttcaaa aattattgag caagtagcaa cccaaatgcg gaataaaaaa
    25381 ctaccgatgg tggacgatat tcgtgatgaa tctgaccacg agaacccgat tcgcattgtg
    25441 attgtgccac gctctaatcg cattgatttt gatgcgttaa tggatcacct gtttgcgacg
    25501 accgatttgg agaaaagcta ccgagtcaat atgaatatga ttggcttaga cggcaagccg
    25561 gcagtgaaga atttgctgac tattctcaat gagtggctga gttttagacg taccactgtc
    25621 actcgccgcc tgaattaccg attagataaa attttaaacc gcttgcatat tttagacggt
    25681 ttgatgattg catttctcaa tattgatgaa gtgattgaga ttattcgcaa tgaagatgag
    25741 ccgaaagccg agttaatggc tcgttttaat ctgaccgatg tgcaagcaga ggcgatcctg
    25801 aacttacgtt tacgccactt agccaaattg gaagagcatc aattacaggc ggaaaaatcc
    25861 gaactggaaa aagaacgtga tgaattgcaa ctgattttag gctcggaacg ccgtttgaac
    25921 agcctgatca agaaagagat tcaagccgat gccaaagcat ttgccagccc acgccgctca
    25981 ccattggttg aacgagcgga gtctaaagcg attgcggaaa gtgacttgac tccaaccgaa
    26041 gatgtgactg tgattttgtc tgaaaaaggc tgggtacgtt gtgcgaaagg acacgatatt
    26101 gatgttcaag ccctaagcca tcgagccgga gatggttatc ttgcccacgc aaggggtaga
    26161 agtaatcagc ctgtggtatt tttagacagt acagggcgag cttatgctct cgatccaact
    26221 tcactgcctt cggcacgctc gcaaggcgaa ccgcttacag gcaaaatcac cctaccggaa
    26281 ggtgcagtag tgcagcaagt gctaatggca agtccagaaa ctaaagtgct aatggcatcc
    26341 gattcaggtt acggctttat ttgcaccttt gcagatttag tttctcgtaa taaagccggc
    26401 aaagcggtta tttctttaac cgaaaatgca aaagtactgc cgccgcaatt attggaaaat
    26461 gatgaaaatt tatcgcttgt agcgatgagt aatgttggca gaatgttggt tttcccggtg
    26521 agtgaattac ctcaactttc caaaggtaaa ggcaataaaa tcatcaatat ttccgccgca
    26581 gcggcaaaat ccggtgatga atatttagcc cgtttattag tcatcaaacc aaccaactcg
    26641 ctggtctttg tgtccggtaa acgcaaaatc acattaaaac cgagcgatgt tgataactac
    26701 cgtggcgaac gagcaagaaa aggctcacag ctagtgagag ggcttagtac caattcaacg
    26761 gtagagattg ttgagtaaag agaagaagcg gttagggggt aaatccaaca attttgcccc
    26821 aaataaccgc ttgcaatgga gttattgctt attcaaataa gcctttgtga agcgaacgaa
    26881 ccacatcgtc tgcttctgca tttttcacta aggtacaaac attattgctg cttgctccat
    26941 agctgattag gcgaatgttg taattctcaa gagtgtggaa taattttttc gccacaccgg
    27001 actgagcgtg taagttgttg ccgataatag cgactaaagc gaggtcgctt tctacttgca
    27061 cattgcaata tgcgttaagc tcatcgagta attccgctga taacatatct gcacctgaag
    27121 aggctgagcc cgttttatct agggtcaatg caacgctgac ttcggaagtg gtaatcacat
    27181 caaccgaaat tttgtgtttc gctaaaatcg caaatacatt cgctaagaaa ccttgtgcgt
    27241 gtagcattga aaggctggaa agcgtgagta aaatttggtt gcggcgtaat gcaatcgcac
    27301 ggaaagtcgg gcgtggttgt ggatcacggg ttacccaagt gccgccttgt tccggtgctt
    27361 tgcttgagcc aacatataca gggatattgc tacgcactgc cggtaataag gttgctgggt
    27421 gtaatacttt cgctccaaat gttgccattt ctgccgcttc gttaaatgcc attgtgtcaa
    27481 tgcgttgagc gttcggtaca acacgaggat cggtggtata aatccccggt acgtctgtcc
    27541 aaatgagtac atcgttagca tttaatactt ctgctaacaa tgcagcagag tagtctgaac
    27601 cgccacgtcc taaagtagtg gttttgcctt catcatcacg accaataaag ccctgtgtaa
    27661 tcacaatttt gcctgatgcg attaatggct taatcacatt gtctgattgt tgctgggttt
    27721 tctcgtcatt tggtgctgct tttccataat ggctgtttgt tgccacaacg tcacgcacat
    27781 ctacccatac tgccgggtgt ccacgttcaa ttaataattg cgtgaagatt ttggtggaca
    27841 tcatttcccc atggctgatt aactcatcac ttaaggcagc tgaagtagca aggctggctg
    27901 attctgctaa tgtttcaata cgttctaata attcgtcgat ttccgcttta acggcatctt
    27961 gatgttgtaa tttttcaata atattgtatt gaatttggcg gactgctgcg atgacttcat
    28021 cacggtgttc tttttcacag ccgttagcaa gttccactaa gtaattggtt acgccagcag
    28081 aggcagaaag taccaccaca cgagtatttg catcagcaat tacaatattg gcagaagagg
    28141 tcattgcatc aaaatttgca acacttgtac caccaaattt agccacagaa agatgagaca
    28201 taataa
//
LOCUS       DANLZD010000014        27698 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.014, whole genome shotgun sequence.
ACCESSION   DANLZD010000014 DANLZD010000000
VERSION     DANLZD010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 27698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27698
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.014"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            391..1428
                     /gene="rsgA"
                     /locus_tag="PXE26_000421"
     CDS             391..1428
                     /gene="rsgA"
                     /locus_tag="PXE26_000421"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit biogenesis GTPase RsgA"
                     /protein_id="HDL5593038.1"
                     /translation="MSKPKLTHNQQRRIQSNHHKRINKKEIEWQDEMLGEMQQGIVVT
                     RHVKHADVETAEGQIFRCNIRRTLKNVVVGDQVSWRKGSEQLQGISGVIEAVFPRKNE
                     LTRPDYYDGIKVMASNIDQIIIVSAVLPTLSLNIIDRYLVICETANIPALIVLNKIDL
                     LNESERQAVKEQLKIYEEIGYETLCLSADTGENMQALHQYLAKGTSIFVGQSGVGKSS
                     LINQLLPEVNALTGSVSDNSGLGQHTTTASRLYHLPQGGQLIDSPGIREFGLWHLEPE
                     QITLGYREFQSVLGTCKFRDCKHKTDPGCALRQEVENGEISAIRFENYHRLIESLSET
                     KSQRHFRKEEV"
     gene            1425..2024
                     /gene="rnhB"
                     /locus_tag="PXE26_000422"
     CDS             1425..2024
                     /gene="rnhB"
                     /locus_tag="PXE26_000422"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HDL5593039.1"
                     /translation="MMNEFIYPNARLIAGVDEVGRGPLVGAVVTAAVILDPNNPIQGL
                     TDSKKLSEKKRQALAEEIKAKALSWSLGRAEPTEIDELNILNATMLAMQRAVAGLHIQ
                     PDFVLIDGNRPPKLPMPAQAVVKGDSLVAEISAASIIAKVARDQEMDELDQQFPQYGF
                     AQHKGYPTKLHFEKLAEFGATPYHRKSFAPVRKVLGLID"
     gene            2037..2396
                     /locus_tag="PXE26_000423"
     CDS             2037..2396
                     /locus_tag="PXE26_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HDL5593040.1"
                     /translation="MTTEYQKTIFTKIINKEIPANIVYQDELVTAFRDIAPQAPTHIL
                     IIPNKFIPTVNHVSNEDELALGRLFTVAAKLAQEEGIAEEGYRLVMNCNKNGGQEVFH
                     IHMHLLGGQKLGPLVAK"
     gene            2399..2770
                     /locus_tag="PXE26_000424"
     CDS             2399..2770
                     /locus_tag="PXE26_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HDL5593041.1"
                     /translation="MRISYFAFAIFSIFLTACGSKPVSYLPTGSEPIVNIESDIAEKI
                     ELETNSKQFSTTNLTEFPLNLTYKLFWYNKDGVTQSHNGISDSIGWQHLWLQPKQKQT
                     IALIKPTEESHNYRLYLRGVK"
     gene            complement(2805..3434)
                     /locus_tag="PXE26_000425"
     CDS             complement(2805..3434)
                     /locus_tag="PXE26_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5593042.1"
                     /translation="MFNLQIIPVSPFQQNCTVIWDENKNAAIIDGGDNAEGIIQFVES
                     QQLKVQKLLITHGHLDHIMAVEKLREHFQVEVFGSHLADKPLFERLPEMCQQFGLPPV
                     NGFLPDHWLEEGDRVEVGELSYTVRHLPGHAPGHIGFFDFDNRIAFSGDVLFQNSIGR
                     TDLYLGNHSQLLETIREKMFDLDDDFIIIPGHGPHTTIGREKQTNPFLK"
     gene            complement(3451..4005)
                     /locus_tag="PXE26_000426"
     CDS             complement(3451..4005)
                     /locus_tag="PXE26_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbK family protein"
                     /protein_id="HDL5593043.1"
                     /translation="MKQINVQRRKWLSLGGLVLGASLLPGQVMAALSTPAPAALRFRN
                     VNTGDTYTAKFGAGGLNKTDLSQLNYLMRDRHINQVKAIDPKLFVKLNQLQRRLGFHN
                     AEILVLSGYRSAQTNARLRRRSRGVASHSYHILGQAVDFQVSGVPLYKVKQAAESLNN
                     GGVGYYPRSNFVHVDTGPVRTWRG"
     gene            complement(4175..5680)
                     /locus_tag="PXE26_000427"
     CDS             complement(4175..5680)
                     /locus_tag="PXE26_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010129962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HDL5593044.1"
                     /translation="MVAFSGMALAETATVAQVASEPVVQDNILPQLSFAAQQARAAEL
                     VKQADYALEQEQIRQEQARKFAEAEARIKQEIGNNALLLSQATTKVYLDSEFATMWND
                     KAAEKAFLKEYALFAVSGVSSKSAKALQQILNQPEGLGRDILLTDGFLDYLYYNKNVF
                     KNANNWLYNLGSYVPKSPSSEQIFQWTNAVREGDSGQFVTDLVPRNHLYRDTAQRVLA
                     MAGGSSAPKAKKGKAVTEVAGGGNGASFYKLALNAQRLRIIPSFNNGIFVNIPSYQLY
                     YFRDGNLALQSKVIVGREDRRTPVMYSKLSNVVVNPPWNVPTSIMTKDIIPKLARDPG
                     YADRASFEILDSSGNKINPRSVNWSQYLNAKSSPYRIRQKAGDDSALGRYKFNMPSSD
                     AIYLHDTPNRGLFGKTGRALSSGCVRVEKSDELATILLKEAGWGSDKKNQVLGSKKTT
                     SAQIRSDNPVYLYYVTAWVEGGKVQTLPDIYNFDAKIPQHSVNWGKLKSII"
     gene            complement(5798..7810)
                     /gene="prc"
                     /locus_tag="PXE26_000428"
     CDS             complement(5798..7810)
                     /gene="prc"
                     /locus_tag="PXE26_000428"
                     /EC_number="3.4.21.102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy terminal-processing peptidase"
                     /protein_id="HDL5593045.1"
                     /translation="MKLTRLNKIFALALGLMIGNAFAVQPDIKESAIVMPKPNEQHSL
                     STKRVTARLTQSHYHKFQLNDEFAGKIFNRYVDWLDPSHNTFLQADIDEMRSKYATTL
                     DDDLYAGKLDAAFAMYELMSKRRYERYSYALSLLDKEPDLKGNDEIEIDREKAAFPKS
                     VEEANTLWEQRVKNDIINLYLKDKKWPEIKKTLTKRYNFAIKRLTQVKADDILQTYLN
                     SFSREIDPHTSYLSPRAAKAFQESMNLSLEGIGATLTQEDDVTSIRALVPGAPAAKSK
                     KLVVGDKIVGVGQGERGEIEDVIGWRLDNVVDKIKGKKGTKVRLEIEPEKGGKTKIIT
                     LVRDKVRIEDSAAKLTVEKVDGKNVGVIKIPTFYIGLTSDVRKLLTQIEKKNVEGLII
                     DLRENGGGSLTEVIELTGLFIKDGPVVQVQDAFNRIKVHEDPESKSVYDGKVMVMINR
                     HSASASEIFAAAMQDYNRAIIVGQQTFGKGTVQQSRSLNFVYDLDQEPLGFIQYTIQK
                     FYRINGGSTQLKGVEADIKFPEIINAAKTGESFEDNALPWDKIPAANYKEAGNARNAV
                     AALTAKHQERIAKNPEFIVLNENIAIRKERDERKFLSLNLEERLKENKADESKRLKDI
                     NARFAREGKKALKDIDDLPKDYEAPDFFLKEAEQMMLDWSEFDKKS"
     gene            complement(7896..8432)
                     /gene="proQ"
                     /locus_tag="PXE26_000429"
     CDS             complement(7896..8432)
                     /gene="proQ"
                     /locus_tag="PXE26_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone ProQ"
                     /protein_id="HDL5593046.1"
                     /translation="MSEQIEQKVEQTQNKTNPSTKEVIAYLAEKFPLCFTLEGEVKPL
                     KVGLFQELAEALKDDEKISKTLLRQVLRNYTNSWRYLAASQANVARVGLQGEEVGVVT
                     EDEATHAAEALAAAKAVVAERKAQERKAQRKEYFKQKAREENAKKRAEFKAKKAIDNL
                     PKASEEKLAALADKFGRK"
     gene            8760..8972
                     /locus_tag="PXE26_000430"
     CDS             8760..8972
                     /locus_tag="PXE26_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HDL5593047.1"
                     /translation="MSAITGTVKWFNATKGFGFITPDQGGKDVFVHFSAIEANGGYRT
                     LEDGAKVQFEIQDSERGASAVNVKTI"
     gene            complement(9032..10186)
                     /locus_tag="PXE26_000431"
     CDS             complement(9032..10186)
                     /locus_tag="PXE26_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate MFS transporter"
                     /protein_id="HDL5593048.1"
                     /translation="MMKVSPFQWAAFNYFGFFCAYGVLLPFLPVWLKHHGYSTEMIGL
                     FAAVGYLFRFAGSMLASQRVKTVSQLIPTARSLTWLNIAAAAALLFSGDFIWLLFPVL
                     MLFQMFNSGAMPIADSIASIWQHQIGLDYGRARLFGSMAFVVGSLSAGYLIGLLGENS
                     VVWIIIGFLVFLGIGQLATPKVGFEEQGNKANTSSVTYRQLLKEPETLKMLIAVSLIS
                     ASHAAYYTYSTIHWSNASISTAMTSLFWGLAVVAEILFFLVSKRLFKSWKISHLMILA
                     AVFAVIRWAIMGSTTEIVLIIVMQMLHSITFGAAHIAMIRYISMQSAERVTKLQGLYF
                     GLASCAFMAVFTFIAGMVYQHSPSLTFWLMAIFTLPAIFIVPKRFEVQIN"
     gene            complement(10183..11001)
                     /locus_tag="PXE26_000432"
     CDS             complement(10183..11001)
                     /locus_tag="PXE26_000432"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HDL5593049.1"
                     /translation="MNEKKLAFIGTGNMAYAIIQGLLKSGYSAEQIIACNKSNLARRE
                     ELQAVGIATNFANREAVEQADVIVLAVKPQMMAQVCAEFADVDFSNKWVISVAAGISV
                     QRLETLLPSAKNIIRTMPNTPSLISEGMTGLFAKKSVNPTACQFAEQLMSAVGKCYWV
                     ETEEQINHIIAITGSSPAYFFRFMEAMQQSAVQMGFSEQDARTLVQSVALGAAKLVEA
                     NPTTPLSTLRENVTSKGGTTAKALEVFEQHDLAKTVDDAMWAAIHRAREMEQSL"
     gene            11078..11986
                     /gene="rdgC"
                     /locus_tag="PXE26_000433"
     CDS             11078..11986
                     /gene="rdgC"
                     /locus_tag="PXE26_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HDL5593050.1"
                     /translation="MVWFKNVMIYKLTGELALESNSLNELQQETRFTPCSQHDMSKFG
                     WATPLTGSDLLHFSQANQFLLISHKEDKLLPANVVKAETEQRIAELEEKEARKLKKTE
                     KQAVKDQVVSALLPRAFSKHQFTALWLDLDNQLVYVDAASSKRAEDTLALLRKTLGSL
                     PVVPISFTLPPAEVMTNWIAKGHTPSWLNLLEEAELKSFDTDSIIRCKRQDLETEEIA
                     RHLQAGKFITKLAIEWEGHFNCVLNEDATLSRLKFADEVREKNDDILKEDVAQRFDAD
                     FLLMTEELKLFTEKMIAEFGGIKSRI"
     gene            12007..12612
                     /locus_tag="PXE26_000434"
     CDS             12007..12612
                     /locus_tag="PXE26_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-phosphoglucomutase family hydrolase"
                     /protein_id="HDL5593051.1"
                     /translation="MLDQTIIDQYDALIFDMDGTLIDTMPSHAKAWEKVGEVLGYPIN
                     PKPMYELSGSTTFVIAREIMQRSNIPEHYFEQVVQLKREFGIEMVLANATLLPAFEII
                     KANVGKKPMAIGTGSHRAMVELLDQKFNLRQYVSVIVDSDDVSNHKPAPETFLKCAEK
                     LGIAPHRCLVFEDADLGVQAALNGNMNVFDVRTNTITHSTR"
     gene            12628..13419
                     /locus_tag="PXE26_000435"
     CDS             12628..13419
                     /locus_tag="PXE26_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HDL5593052.1"
                     /translation="MKTEWIKHLIQQLTTLSKAIENYFTSGSFGVKFYPFLMHPCFRK
                     SCAFLIFIIAMVSSFSGLFYLVAEHITILFSERSLTTYFHHSTLELMIPVGTMIDEKI
                     SELSPLSVVMRSMFVLQAVVFFFIYAIGITHIAHNKLRVIGLLLSLCFAIGCSLVAGI
                     QPSSRGEFGIYNLGASITFLIGNLTLIIAGFDLYHPSMQFFKRFSIGAGVIGAICILI
                     TIFLPTLFSPLIERAGIYTIMLWEILAGFAIIKRLLKLPSFRQQG"
     gene            13423..14565
                     /gene="argE"
                     /locus_tag="PXE26_000436"
     CDS             13423..14565
                     /gene="argE"
                     /locus_tag="PXE26_000436"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HDL5593053.1"
                     /translation="MKQIPFIQRYAQLIELPTISSLVAEEDLSNRRLIELLATWLADF
                     GFKTEILAVEGSRNKYNLLATYGEGEGGLLLAGHTDTVPFDEGKWRFNPFQLTEKAGK
                     LYGLGTADMKGFFAFVVEVVSQLDLTQIKKPIRILATADEETTMLGARTFAQHSHIRP
                     DCAIIGEPTSLKPIRAHKGHIGESVRITGRSGHSSDPAKGINAIELMHQSIGYLMKMR
                     DELREKYHNPLFQVTHPTMNFGNIHGGDAINRICACCELQFDMRPLPNMAVQDLYAMV
                     NEHLKPMLEQYGDLIEIRHLHDGIPGYECEHSAQIVQVVEKLLGEKCDAVNYCTEAPF
                     IQQLCPTLVLGPGSIEQAHQPDEFLEMKYIEPTKELLTKLIYHFCG"
     gene            complement(14712..14999)
                     /locus_tag="PXE26_000437"
     CDS             complement(14712..14999)
                     /locus_tag="PXE26_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5593054.1"
                     /translation="MPKSWELSLTARSNVIEILQSVEDYTGHWLSAVSLWEQLQNKLD
                     LIAFMPTIGRRREDGTLETFCRNYRIVYEIHLEKVYIITIIHSRRLYPRPS"
     gene            complement(14992..15183)
                     /locus_tag="PXE26_000438"
     CDS             complement(14992..15183)
                     /locus_tag="PXE26_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593055.1"
                     /translation="MLFKEQGYDEFLAEQIKAGQEAIARGETFTKEQINNELNHLFAD
                     MQKRQQLRENENLFEVNYA"
     gene            complement(15473..16063)
                     /gene="yraP"
                     /locus_tag="PXE26_000439"
     CDS             complement(15473..16063)
                     /gene="yraP"
                     /locus_tag="PXE26_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divisome-associated lipoprotein YraP"
                     /protein_id="HDL5593056.1"
                     /translation="MNKLANKLLKGSLLVLGFISLQGCITTAVVTSAAVATKVATDPR
                     TTGTQVDDEILEEKVAYNINKDEQIKQEARINVVAYNGKVLLIGQAPSMDVVENAKNL
                     AAGAEGVTEIYNEIRQGEKIGFGQITQDSWITTQVKSKLLVNSEVKATEVKVVTENGE
                     VFLMGKVSQNQADAAAEAARNVGGVTKVVKVFSYAQ"
     gene            complement(16073..16657)
                     /locus_tag="PXE26_000440"
     CDS             complement(16073..16657)
                     /locus_tag="PXE26_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HDL5593057.1"
                     /translation="MLNKIQDRFTESIQTQISASELLPAKLSEAANRIVACLLRGDKV
                     IVCGHGRSYGNAELLVSHLLHRYELARPSFAAVQLQLSGVLAGVVAQDNELEAVYKKQ
                     LQAVAKEGDLFIVFSPVGNEECILQAIHTAKNQHLDLDIIALTGSNNDHTLGLLDESD
                     IEISAPSTNQLRVIESHHFYVNLLCELIDHLLFS"
     gene            complement(16663..17034)
                     /locus_tag="PXE26_000441"
     CDS             complement(16663..17034)
                     /locus_tag="PXE26_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HDL5593058.1"
                     /translation="MELFNKLINKREQGSFYEQKARVFLEQQGLRFVAANQAFKGGEL
                     DPIMQDGQTVVFVEVRQRKSNRFGSAVESIDYRKQQKWQNAANMWLLKQNQSLETANC
                     RFDVVAFEGNQTPVWIPNFLG"
     gene            complement(17009..18730)
                     /locus_tag="PXE26_000442"
     CDS             complement(17009..18730)
                     /locus_tag="PXE26_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator"
                     /protein_id="HDL5593059.1"
                     /translation="MATILNHTMKKALVPTAIALFISACTSVNPVTESIKNEAYSSSE
                     FYINKADQTKEAEDKISYQLLAVRKLIDENKEYEAQNTFSEILTAEMNEVQKLEYALV
                     SAQLAALQGKNEQATSQLKAIQDPLLSSAQRLRYIQTQARIAANQKDVIGIVRARSQL
                     NNFYKMNRERQENNDIIWQTLRDANRGMLEKTVPEAGEMELAGWLALINIYNQNVTTP
                     AQMPQAINNWKAQYPSHSAVAVMPTELQGVSNFQQTQLNSVALLLPLSGDAKILGDII
                     KRGFNDAKADDSTAVQTFDTDSSDVNSLISQAKQQGANVIVGPLLKSRVDEMLLSPEI
                     QNVNILALNATENVRNIAQVCYYGLSPESEAQSGAEKIYQDGNSVAIVAAPQDDYGNR
                     SAEAFAKRWRQLTNSDADVRYYNQPLDAVAAIQNAGVSKAALYILGNAEQVLEIKQGI
                     DSSTLKDRLAIYTSSRSNSPNNGIDFYTSMEGVKFSEVPLLADQSSSEYKKAENLANS
                     DFSMMRLYAMGADAWSLATKFNEFRHIPGYKISGLTGELKAGQHCNIERSLSWMQYRN
                     GAIQQAY"
     gene            18804..19676
                     /gene="rsmI"
                     /locus_tag="PXE26_000443"
     CDS             18804..19676
                     /gene="rsmI"
                     /locus_tag="PXE26_000443"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HDL5593060.1"
                     /translation="MKNRQNSSGINPNYGILYIVATPIGNLGDITQRALDTLSSVDLV
                     AAEDTRHSGLLLSHYGIKKPFFALHDHNEQQKAVVLVEKLAKGENIALISDAGTPLIS
                     DPGFHLVRHCRQAGVKVVPIPGACAAVTALCASGIASDRFCFEGFLPAKTKSRCDKLT
                     ELENEPRTLIFYESTHRILDTLADMQTVFGEDRYVVMAREITKTWETIYGDQLGNLIE
                     WLNEDSNRIKGEIVLVVEGKPQSSEEAFSSQAIKLLTLLCQELPLKKAAAIVAETFGY
                     KKNALYQYGLEHFE"
     gene            complement(19921..21087)
                     /locus_tag="PXE26_000444"
     CDS             complement(19921..21087)
                     /locus_tag="PXE26_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5593061.1"
                     /translation="MTNLLLAIIYLSFISLGLPDAILGSAWPSMHQQLAVPLSYAGVV
                     SMIMSIGTITSSLMSDKLTYHLGTGKVMVISVALTALALWGFSISDAFWILCLWAIPY
                     GLGAGAVDAALNNYVAVHYASRHMSWLHCMWGVGASIGPHILGYALLQGRGWEAGYFT
                     ISMLQIGLTLMLFCSLPFWKLRKQITAEINHSAKPMSLKETLKIPGVKYGILAFFGYC
                     GVEQTAGLWASSYFVMVKDVGLEQAAAFGSIFFIGITVGRGVSGFLTLKFSNRQMIKL
                     GSALILVGIAILCLPLGKYVTLASLIIIGLGCAPIFPCLIHSTPAFFGEDKSQSVIGV
                     QMASAYIGVLLLPPIFGFIANAISIQLLPLYLLLMFAIMAYAYRNLVRETSPSP"
     gene            complement(21239..22753)
                     /gene="putP"
                     /locus_tag="PXE26_000445"
     CDS             complement(21239..22753)
                     /gene="putP"
                     /locus_tag="PXE26_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HDL5593062.1"
                     /translation="MFGLDPTTIMFVVYILGMIAIGFIAYRVTNNLSDYILGGRRLGS
                     FVTALSAGASDMSGWLLMGLPGAVYAGGLIEGWIAIGLTIGAYLNWKLVAGRLRSHTE
                     HSGDALTLPEYFHNRFGDKTRLIKILSAVIFLLFFAIYCASGVVAGARVFENLFGLPY
                     HQAIWYGAVATILYTFIGGFLAVSWTDTIQASLMVFALILTPFFVMYNLGGFDEMQAL
                     IDRAGEMAQKDYNDIFTGTSVLGIISLMAWGLGYFGQPHIVVRFMAAESVKSLENARR
                     ISMTWMIICLLGAIGIGYFGMAYFFGNPEQVGNISKNPEQIFIELAKLLFNPWVAGIL
                     LSAILAAVMSTLSAQLLICSSAITEDLYKGILRPQASDKELVWLSRLMVLAVAALAIY
                     IAQDPDSKVFGLVRNAWAGFGSAFGPVVLLSLFWKRMNGFGAIAGMLTGALIVHFWGD
                     ITLKLALPEIYSMIPGFIAATLMIIVVSLITPMPSKAVLDTFDRANKAYLAEVK"
     gene            complement(22847..23635)
                     /locus_tag="PXE26_000446"
     CDS             complement(22847..23635)
                     /locus_tag="PXE26_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HDL5593063.1"
                     /translation="MNAKKEKESSGNQSLIRGLTLLELLAKFPNGCPLAHLAELSGLN
                     KSTVHRLLQGLQQEGYVRPAPTAGSYRLTTKCLAIGQRALSSINILHIAAPHLEALNL
                     TLGETVNFAMRENDHAILINKLEATTGMMRTRAYIGQQMQLYCSGMGKLFLAYGSADY
                     IPQYWQTKSDIIQKLTVNTITTIDGMQTELETIRRQGFAMDNEENELGVSCIACPIFD
                     HQQKVHYAISVSLSTARLNQLGRENLLPAIQETAEKISAELGGR"
     gene            complement(23632..24210)
                     /locus_tag="PXE26_000447"
     CDS             complement(23632..24210)
                     /locus_tag="PXE26_000447"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HDL5593064.1"
                     /translation="MNQSSLTDLRSQLRQSMRLKRQSLTAGQQTQAAESIIPQALSLI
                     ESYQASHIAFYLPFNGEISPIPLMEQLLQQGKKLYLPLLHPFTSGQLLFVNYNCKTIL
                     KFNRLGIQEPILDVRNILPLQELEMIFTPLVACDKAGNRLGMGGGFYDRTLAQAPHLI
                     SVGLAHECQQVEQLPIESWDMPLDHIILGAAK"
     gene            complement(24212..24403)
                     /gene="ssrS"
                     /locus_tag="PXE26_000448"
     ncRNA           complement(24212..24403)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="PXE26_000448"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(24508..24798)
                     /locus_tag="PXE26_000449"
     CDS             complement(24508..24798)
                     /locus_tag="PXE26_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HDL5593065.1"
                     /translation="MSANNIELQIFGQVLRLQCPVEQQEHLLASAQRLEERVVVLKEQ
                     SGIIQLEKVLAIVALNLNYELEQAQRQNAENKNVLVACIEQLDNSLGKFQSN"
     gene            24877..25434
                     /locus_tag="PXE26_000450"
     CDS             24877..25434
                     /locus_tag="PXE26_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein"
                     /protein_id="HDL5593066.1"
                     /translation="MAITDSQQFKQLVSQLQIDDTPAEFHGFLCGLIAGGIQDESWKT
                     LTYQFTNDGHAFSIEPLNTLTDFYQQLSESFSEANTLFSLWLPQNEEDGFALADGISE
                     WTNSFLLGLGVAQPKLQQETDEVGEAIDDLDEIAKLGYSDDDNNEELLEAGEEVLEYL
                     RVLALFLHSHFALGVPKTEEKPPLH"
     gene            25532..26596
                     /gene="hemE"
                     /locus_tag="PXE26_000451"
     CDS             25532..26596
                     /gene="hemE"
                     /locus_tag="PXE26_000451"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HDL5593067.1"
                     /translation="MSELKNDRYLKALLREPVDMTPVWMMRQAGRYLPEYKATRAEAG
                     DFMSLCRNADLACEVTLQPLRRYELDAAILFSDILTVPDAMGLGLSFGAGEGPKFARP
                     VASLNDVNQLPIPDPEDELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTKIKKMLYAEPHILHKLLDKLADSVILYLNAQIKAGAQAVMVFDTWGGVLAHED
                     YKAFSLHYMHKIVDGLIRENEGRKVPVTLFTKGGGLWLEAIAETGCDAVGLDWTVDIA
                     DARRRIGDKVALQGNMDPSVLYASPERIEQEVKNILAGFGNGSGHVFNLGHGIHLDVP
                     VESPKVFVDAIHNYSKQYHK"
     gene            26743..27333
                     /locus_tag="PXE26_000452"
     CDS             26743..27333
                     /locus_tag="PXE26_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF416 family protein"
                     /protein_id="HDL5593068.1"
                     /translation="MRNPIHKRMERFEPWQNTTFMACLCERMYPNYQLFCEVTEQPEK
                     AKVFQNILNLVWEYLTIKGAKINFDNQLEKLEEIIPDVNEYAFFGVLPAQEACEALSE
                     LLHSIIAGSTLEQAIRISQISLGTVASYLEMQQDKELNEQELKNSEEIQEELDVQWQI
                     YRLLNECEKRDLDLIFELKDEIRSSGISNIGLNINQ"
     gene            27469..>27698
                     /locus_tag="PXE26_000453"
     CDS             27469..>27698
                     /locus_tag="PXE26_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005819506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HDL5593069.1"
                     /translation="MNKTELIDAIAAGANLTKKDAKAALEATLDAISASLKAGDAVQL
                     IGFGTFKVNERKARTGRNPKTGEEIKIAAAKVP"
BASE COUNT         8230 a         6073 c         5445 g         7950 t
ORIGIN      
        1 tttaaataaa aaaaattcgt ttgatgcttg caaatagaaa taataaaata tccgcatact
       61 tagatggata gtttagaatt tatttctatt cctaaatttt aagtatgatg ttgtgtttgc
      121 atattggtct aggaaactag actagagtaa cgaaagttac ttgtttcact tcctgtatat
      181 tttgaaccgt attggtttat aaccgcccac tttgggcggt ttttttctat gtaaaaaaac
      241 agcacaaaac ctagatcgca ttctatatta ttcgctacct ttattctagc ctttctgctt
      301 ttttattctt tcactttaat ctattataaa aagaggtttt atagtatgct aaagcctatt
      361 tttcatttgc aataattacc gagagttctt ttgagtaaac cgaaattaac ccataaccaa
      421 cagcgtagaa tccaatctaa ccatcataag cgtatcaaca aaaaagagat tgaatggcaa
      481 gatgaaatgt taggagaaat gcaacagggc atcgtcgtta ctcgccacgt taaacacgct
      541 gatgttgaaa ccgcagaggg gcaaattttc cgctgtaata tccgccgtac attgaaaaat
      601 gtagtggtgg gcgatcaggt ttcttggcgt aaaggtagtg agcaactaca agggattagt
      661 ggggtcattg aagccgtctt cccacgtaaa aatgaactta cccgccccga ttattatgac
      721 ggtattaagg tgatggcatc gaacatcgat caaatcatta ttgtatcagc tgtgctacct
      781 acactttcgc tgaatattat cgaccgttat ttagtgattt gcgaaacggc gaatattcct
      841 gccttaatcg tgctaaacaa aattgattta ttaaacgaaa gcgaacggca agcagttaaa
      901 gagcagctca aaatctatga agagattggc tatgaaaccc tatgtttatc ggctgatacg
      961 ggtgaaaata tgcaggcgtt acaccaatat cttgctaaag gtacgtctat ttttgtcgga
     1021 caatccggcg tggggaaatc cagcctaatt aaccaactgt tacctgaagt caatgctctc
     1081 actggctcag tgagcgataa ctcagggtta ggtcagcaca ccaccactgc ctctcgctta
     1141 taccatttac cgcaaggcgg acagctgatt gactcgccgg gcattcgaga atttggctta
     1201 tggcatttag aacctgagca aatcacctta ggctatcgag aatttcaatc ggttttaggc
     1261 acgtgcaaat tccgtgattg caaacacaaa accgacccgg gttgtgcctt aagacaagag
     1321 gtcgaaaatg gcgaaatttc tgcaattcgg tttgaaaatt accatcgctt aattgaaagc
     1381 ctgtctgaaa ccaaaagcca acgccatttc agaaaagaag aagtataatg aatgaattta
     1441 tttaccctaa cgcccgatta atcgccggtg ttgacgaagt cggacgagga cctttagtcg
     1501 gagcggttgt gaccgcagcc gtgattttag atccgaataa cccgattcag ggcttaaccg
     1561 attccaaaaa attatccgag aaaaaacgcc aagctttggc agaagagatt aaagccaagg
     1621 ctctgagctg gtcgctagga cgtgccgagc cgacagaaat tgatgagctg aatattttaa
     1681 atgcgacaat gttggcaatg caacgtgcgg ttgccggctt gcatattcag ccggattttg
     1741 tgctaattga cggcaatcgt ccgccaaaac tgccaatgcc ggcacaagcg gtggtgaaag
     1801 gagacagctt agtggctgaa atcagtgctg cttcgattat tgccaaagtc gcccgagatc
     1861 aagaaatgga cgaattagac caacaatttc cgcaatacgg cttcgcacag cacaaaggct
     1921 acccgactaa actccatttt gaaaaattag cagaatttgg ggcaacacct tatcatcgta
     1981 agagttttgc ccctgtaaga aaagtattag gtttaatcga ttagaaggaa aacacaatga
     2041 ctacagagta ccaaaaaacg attttcacca aaatcatcaa taaagaaatt ccggcaaata
     2101 ttgtctatca agatgaactt gtgaccgcat ttcgtgatat tgctccacaa gcacccacgc
     2161 atattttgat tattccgaat aaatttattc caaccgtcaa tcacgtgagt aatgaagatg
     2221 aattagccct agggcgttta tttacggtgg cggcaaaatt agcccaagaa gaaggcattg
     2281 ccgaagaagg ctatcgctta gtgatgaatt gtaataaaaa cggcgggcag gaagtgttcc
     2341 atattcatat gcacttgtta ggcggacaaa aactaggacc tttagtggca aaataactat
     2401 gcgtatttcc tactttgcat ttgcaatttt ttcgattttt ttgaccgctt gtggtagcaa
     2461 acctgtcagc tatttaccaa ccggctcaga gcctattgtc aatattgagt ctgacattgc
     2521 tgaaaagata gagctggaaa cgaatagcaa gcaatttagc accacaaatt taactgaatt
     2581 tccgcttaat cttacttata aattattttg gtataataaa gatggggtaa cacaatccca
     2641 taacggtata tcagatagta tcggctggca acatctatgg ttgcaaccta agcaaaaaca
     2701 gaccattgca ctcattaaac cgacggaaga aagccataat taccgcctct atttacgagg
     2761 cgtaaaatag caaaaaagca gagccaactg ctctgcttct ttatttattt caaaaacggg
     2821 ttggtctgtt tttcccgccc gatagttgtg tgtggaccat gtcccggtat gatgatgaaa
     2881 tcatcatcta aatcaaacat tttttccctg atcgtttcca ataactggct atggttgcct
     2941 aaatagagat ctgttcgacc tatgctattt tggaataaaa catcgccact aaaagcaata
     3001 cgattgtcaa aatcaaaaaa accgatatga cccggagcat gacccggcaa atgtcgaacg
     3061 gtatagctca gctcgccgac ttcgacccga tcaccttcct ccaaccaatg atccggcaaa
     3121 aagccattta ctggtggtaa tccaaattgt tggcacattt ccggcaaacg ttcaaataaa
     3181 ggtttatctg caagatgcga gccgaaaacc tctacttgaa aatgctctct caacttttcc
     3241 accgccataa tatgatctaa atgaccgtgc gtaatcaata atttctgaac cttaagctgc
     3301 tgagattcaa caaattgaat aatgccttcg gcattatcgc cgccatcaat aatagccgca
     3361 ttcttatttt cgtcccaaat caccgtgcaa ttttgttgaa atggactaac aggaataatt
     3421 tgcaaattaa acataaaata agaccgcttg ttagcctctc caagtgcgaa ctgggccagt
     3481 atctacgtga acaaagttac tacgaggata ataacctacg ccaccattat tcaagctctc
     3541 agccgcttgt tttactttat ataacggcac acctgatact tggaaatcta ctgcttgccc
     3601 aagaatatgg taactatggc tggcaacacc acggcttcta cgacgaagtc ttgcatttgt
     3661 ttgtgcggag cgatagccac ttaatactag gatttccgca ttatggaaac ctaaacggcg
     3721 ttgtaattga ttcaatttga caaataattt tggatcaatt gctttaactt gattgatatg
     3781 acgatcccgc attaaatagt ttaactggct taaatcggtt ttatttaatc cacctgcacc
     3841 aaatttagca gtgtaagtat cgcctgtatt cacattacga aaacgtaacg cagctggggc
     3901 aggagtagaa agcgctgcca ttacttgacc cggcagaagg ctagccccta aaacaagtcc
     3961 gccgagtgat agccacttac ggcgttgaac attaatttgt ttcatttttt cctcataggt
     4021 tagctaatga tttatagaaa atcactcaca aatgagcgaa tttctataca ccatacttaa
     4081 agtaaaaatt tacaatcgta aatttatgta agctatattt tcaaaaagtt ccaagaagat
     4141 gatatcttct tggaatttat cagaaatagc acgattaaat aatgctcttt aattttcccc
     4201 aattcacaga atgttgtggg attttggcat caaagttata aatgtccgga agggtttgca
     4261 cttttccacc ttcaacccaa gccgtcacat aatagagata aaccgggtta tctgaacgaa
     4321 tctgagccga ggtcgtcttc ttactgccta agacttgatt ctttttatca gatccccaac
     4381 ccgcttcttt taataaaatg gttgccaatt catcagattt ttctacacgg acacaaccag
     4441 aacttaacgc acgccccgtt ttaccaaata atcctctatt tggcgtatca tgcaaataaa
     4501 ttgcatccga acttggcata ttaaatttat aacgtcctaa agcgctatca tcacctgctt
     4561 tctggcgaat acggtatggt gaacttttag catttaaata ttgtgaccaa tttacgctac
     4621 gcggattaat tttattgcca ctactatcaa gaatttcgaa actagcacga tctgcataac
     4681 ctgggtcacg cgctagttta ggaataatat ctttagtcat aatactagtc ggtacattcc
     4741 aaggtggatt cactaccaca ttgctcagct tactatacat taccggtgta cggcgatctt
     4801 ctcgcccaac aatcacttta gattgaagag ctaaattacc atcacggaaa taatataatt
     4861 gatagcttgg gatattcaca aaaattccat tgttaaaact tggaataata cgtaaacgtt
     4921 gagcattgag cgctaattta tagaaagaag ccccattacc gccaccagct acctccgtaa
     4981 cagctttacc ttttttggct ttaggtgctg aagagcctcc tgccattgcc aatactctct
     5041 gtgccgtatc acgatataaa tggtttcttg gaacaaggtc tgttacaaac tgcccagaat
     5101 cgccttccct cacggcatta gtccattgga agatttgctc tgaagagggc gattttggta
     5161 cataactgcc taagttatat aaccaattat ttgcattttt aaacacattt ttgttgtaat
     5221 acaaataatc taagaagcca tcagttaata aaatatctct acctaaacct tccggttgat
     5281 ttaagatttg ctgcaatgcc ttagctgatt tagaggatac cccacttact gcaaataatg
     5341 catattcttt caaaaatgct ttttctgcgg ctttatcatt ccacattgtc gcaaattcac
     5401 tgtctaaata aaccttagtt gttgcttggc tcagcaataa ggcattatta cctatttctt
     5461 gcttaattct tgcttccgct tctgcaaatt ttcttgcttg ctcttgacga atttgttcct
     5521 gttctaacgc ataatcggcc tgttttacca attctgcagc acgagcctgc tgagctgcaa
     5581 aacttaattg tggtaaaata ttatcttgta caacaggctc agaagccacc tgagcaactg
     5641 tggctgtttc agccaaagcc atgccagaaa acgccaccat aataggtaat aatttaaagg
     5701 ttttcaccca ctcttcctct taatatttgc aaatttataa aaaaataaac cgcttagcgg
     5761 agctaagcgg tacgttatgt gcgcattata aacacattta tgatttttta tcaaattctg
     5821 accaatcaag catcatctgt tcagcttctt ttaagaaaaa gtccggtgct tcatagtctt
     5881 ttggtaaatc atcaatatct tttaatgctt ttttgccttc acgggcaaaa cgagcattaa
     5941 tatcttttaa gcgcttgctt tcatctgctt tattttcttt caggcgttct tctaaattta
     6001 acgataaaaa cttacgctca tcacgttctt ttcgaatcgc aatattctcg tttaatacta
     6061 taaactctgg gtttttagca atacgctctt gatgtttcgc tgttaatgca gcaaccgcgt
     6121 tacgagcatt cccagcctct ttataattag ctgctggaat tttatcccaa ggaagcgcat
     6181 tatcttcaaa actttcacct gtttttgcag cattaatgat ttccgggaat ttaatatccg
     6241 cctcaacccc ttttagctgg gtacttccac cattgatacg gtagaatttt tgaatcgtat
     6301 attggataaa accaagaggc tcttgatcca aatcatatac aaaattcaat gaacggctct
     6361 gttgaacagt tcccttacca aaggtttgtt gccctacaat aattgcacgg ttgtaatctt
     6421 gcattgccgc agcgaagatt tcagaggctg aagcactatg gcgattaatc atcaccatca
     6481 cttttccatc ataaactgat tttgattctg gatcttcgtg tactttgata cgattgaatg
     6541 cgtcttgtac ttgcactaca ggcccatctt taataaataa accagttaat tcaatcactt
     6601 cagttaacga accaccaccg ttttcacgta aatcaatgat caatccttca acattttttt
     6661 tctctatttg agtaagtaat ttacgtacat ctgaagtcaa accgatataa aaagtaggga
     6721 tcttaattac ccctacattt tttccatcta ctttttctac cgttaattta gcagcactat
     6781 cctcaatacg aactttatca cgcacaaggg taataatttt agtttttcca cctttttcag
     6841 gctcaatttc taaacgaact ttagtgcctt ttttaccttt gattttatcg actacattat
     6901 ccaaacgcca accgataaca tcttcaatct cacctctctc accttgacct acaccgacaa
     6961 ttttatcgcc gactaccagc ttcttacttt tagcggcagg ggctcctggc actaatgctc
     7021 taatgctggt tacatcatct tcttgggtta gcgttgcacc aattccttct agcgacagat
     7081 tcatgctctc ttggaacgct tttgccgcac gaggagacaa atagctagtg tggggatcga
     7141 tctcacgaga gaatgaattt aagtaagttt gtaaaatatc atcagcctta acttgagtta
     7201 aacgcttaat cgcaaagtta taacgtttag tgagtgtttt cttaatttca ggccattttt
     7261 tatctttaag atataaattg ataatatcgt ttttaactcg ctgctcccaa agtgtatttg
     7321 cctcttctac actttttgga aatgcggcct tctcacggtc aatctcaatt tcatcattcc
     7381 cttttaagtc aggctcttta tctagtaaag ataaggcata gctataacgc tcataacgac
     7441 gtttagacat taactcatac attgcaaatg ctgcatctaa tttaccagca tataaatcat
     7501 catctaatgt tgtagcatat ttactacgca tttcatcaat atcggcttga agaaaagtat
     7561 tatgagaagg atcaagccaa tcgacatagc ggttaaaaat cttccctgca aactcatcat
     7621 tcagttgaaa tttatgataa tgcgattgag ttaatcgggc tgttacacgc ttggttgata
     7681 agctatgctg ctcattaggt tttggcatca caatcgcact ttctttaatg tccggctgaa
     7741 cggcaaaagc gtttcctatc attaaaccta gggctagggc aaaaatttta tttaatcttg
     7801 ttaatttcat cttcttttcc aaataatcaa gcggtcattt ttttgcaaaa ttttactaaa
     7861 atccgaccgc ttgtaagcac aaagcgactt gaaaactatt tacgaccgaa tttatctgct
     7921 aatgcagcta atttttcttc tgaagcttta ggtaaattat ctattgcttt tttcgcctta
     7981 aattctgcac gctttttcgc attttcttca cgtgctttct gtttgaagta ctctttacgt
     8041 tgtgctttac gctcttgtgc tttacgttct gcaaccaccg ctttcgcagc agccaaagct
     8101 tctgcggcgt gagtagcttc gtcttctgtt accacgccaa cttcttcacc ctgtaagccg
     8161 acacgagcaa cattagcttg gctggcagcc aagtaacgcc aagaattagt gtaattccgc
     8221 aatacttggc gcaataacgt tttactgatt ttctcatcat cttttaatgc ttcagctaat
     8281 tcctgaaaca acccaacttt caatggtttt acttcacctt caagcgtgaa acaaagcgga
     8341 aatttctccg ctaaataagc aatcacttcc ttggtacttg gattggtttt attctgagtt
     8401 tgttctactt tttgctcaat ttgctctgac ataataagtc ctatttaata aaaatctaat
     8461 aattagataa gtgaaaatct aactggatac tatatttgat ttataaggct tcgtccatat
     8521 aaattccaca ttacgtttac aaaagagata gactcttttt tcatttgaat gttcataaaa
     8581 gtataaaaat gatttgctta aaaaatgaat aagtggtgta atggctcaag ctgttcgtgc
     8641 gttaattaaa gttgaatctt gttagttatt ttcctcaagg caagtgattg atagatacgt
     8701 ctgtaatatc ccgtttagct atcttttatc actttttgta tttatataag gaaaatttta
     8761 tgtcagcaat taccggcaca gtaaaatggt tcaacgccac caaaggtttt ggttttatca
     8821 cccctgatca aggtggcaaa gatgtattcg tacacttctc tgctatcgaa gcaaacggcg
     8881 gctaccgcac attagaagac ggtgctaaag tacaatttga aatccaagat tcagagcgtg
     8941 gagcttcagc cgtaaacgtg aaaacaatct aatttcagca aattcaatga atttcgataa
     9001 aaatgccgac aacttgtcgg catttttgct atcaattaat ctgtacttca aaccttttcg
     9061 gcacaataaa aatggcaggt agggtaaaaa ttgccatcaa ccaaaatgtc aggcttgggg
     9121 aatgttgata gaccattccg gcaataaagg taaatactgc cataaaagca cagcttgcca
     9181 agccaaaata gagaccttgt aatttcgtca cacgctctgc cgattgcatc gaaatatagc
     9241 gaatcatcgc aatatgagcc gccccgaagg taatagaatg tagcatttgc attacaataa
     9301 tcagcacgat ctctgtagta ctacccatta ttgcccaacg aatcactgca aaaacggcag
     9361 ctaaaatcat taaatggctg attttccacg atttaaacaa gcgtttagag accaaaaaga
     9421 acaaaatttc cgccaccacc gccaagcccc aaaacaggct agtcattgcg gttgaaatac
     9481 tggcatttga ccaatgaatg gtgctgtaag tgtaataagc ggcgtgcgag gctgaaatta
     9541 acgacaccgc gatcaacatt tttaaggttt ccggctcttt caataattgg cgataagtta
     9601 cgcttgaagt attggcttta ttaccttgtt cttcaaaccc gactttgggc gtagcaagct
     9661 gccctattcc taaaaaaacc aagaaaccga tgataatcca caccaccgaa ttttcaccaa
     9721 gcaagccgat aagatagccg gcagaaagtg agcctaccac aaacgccatt gagccgaata
     9781 accttgctct gccgtaatcc agcccgatct gatgttgcca aattgaggca atgctatcgg
     9841 ctatcggcat tgcccccgaa ttgaacattt gaaacaacat taacaccgga aaaagtagcc
     9901 aaatgaaatc ccctgaaaac agcaacgccg ccgcagccgc aatattcagc caagttaaac
     9961 tgcgggcggt gggaatgagt tggctcacgg tttttacccg ttgtgaggca agcatactgc
    10021 cggcaaagcg gaacaaatag ccaacggcgg caaataagcc gatcatttca gtcgaatagc
    10081 cgtgatgttt aagccacact ggcaaaaacg gcaacaacac gccataggca caaaaaaagc
    10141 caaagtaatt aaatgccgcc cattggaacg gggaaacttt catcataacg attgctccat
    10201 ttctctggct cgatgaattg ccgcccacat tgcatcatca acggttttag caagatcgtg
    10261 ctgctcaaac acctcaaggg ctttcgccgt tgtgcctccc tttgaggtca cattttcccg
    10321 caaggtcgaa agtggcgtag tcgggttcgc ttccaccaat ttcgccgccc ccaatgcgac
    10381 agattgtaca agcgttcttg cgtcctgctc ggaaaagccc atttgcaccg cactttgctg
    10441 cattgcctcc ataaaacgga agaaatacgc cgggcttgag ccggttatcg caataatgtg
    10501 gttgatttgc tcctcggttt ccacccagta acatttacca acggctgaca tcaactgttc
    10561 ggcaaattgg caagcggtcg gatttaccga tttttttgca aataatccgg tcattccttc
    10621 gctgattaaa gacggggtgt ttggcatcgt gcgaatgata tttttcgcac tcggcaacag
    10681 cgtttccaag cgttgcacag aaatacctgc tgctactgaa atcacccatt tgttggaaaa
    10741 atcaacatcg gcaaactcgg cacacacttg tgccatcatc tgtggtttta ccgccagcac
    10801 gatcacgtca gcctgctcta ccgcctcacg atttgcaaaa tttgtcgcaa ttccgaccgc
    10861 ttgtaactcc tctcggcgag ccaaattact tttattgcac gcaatgattt gttcggcaga
    10921 ataaccgctt tttaataagc cttgaataat cgcatacgcc atatttccgg tgccgataaa
    10981 ggcaagtttt ttctcgttca ttcgcaaatt ctctactgtg ttgggttgag gtctgttaaa
    11041 ataacactat tctacacccg ataaaggata tgcaaaaatg gtttggttca aaaatgtgat
    11101 gatctataaa ttaaccggcg agctggcgtt ggaaagcaat agccttaacg agttacagca
    11161 agaaacccgc tttacccctt gcagccagca cgatatgagc aaattcggct gggctacgcc
    11221 acttaccggc tcggatttac tgcatttctc acaagcgaac caatttttgc tgatttcaca
    11281 caaagaagat aaattattac ctgccaatgt ggtgaaagcc gaaaccgagc aacgcattgc
    11341 agaactggaa gaaaaagagg ctcgtaagct gaaaaaaacc gaaaaacaag ccgtgaaaga
    11401 tcaggtcgtt tctgcgttat tgcctcgagc attcagcaaa catcaattca ccgctctttg
    11461 gttggattta gataatcagt tggtttatgt ggatgcagcc tcgagcaaac gggcggaaga
    11521 tacgctggcg ttactgcgaa aaacacttgg ctcgttgccg gttgtgccga tttcctttac
    11581 cctaccgccg gcagaggtaa tgacgaattg gatcgccaaa gggcatacgc caagttggtt
    11641 gaatttgttg gaagaggcag aactgaaatc tttcgatacc gacagcatta ttcgctgtaa
    11701 acgccaagat ttagagacgg aagaaatcgc ccggcacttg caagcgggca aatttatcac
    11761 aaaacttgcg attgaatggg aagggcattt caattgcgtg ttaaatgaag acgccacgct
    11821 ttcacgcctg aagtttgccg atgaagtgcg agagaaaaat gacgatattc tcaaagaaga
    11881 tgtggctcaa cgctttgatg ccgatttctt attaatgacc gaagagctga aacttttcac
    11941 cgaaaaaatg attgccgaat ttggcggaat taaatccaga atttagaaaa aaatttaagg
    12001 aaagcaatgt tagatcaaac cattatcgac caatatgacg ccttgatttt tgatatggac
    12061 ggcacattaa ttgacacgat gccaagccac gccaaggcgt gggaaaaggt gggcgaagtg
    12121 ttaggctacc caatcaatcc aaagccaatg tacgaactga gtggctcaac cacttttgtg
    12181 attgcccgag aaataatgca acgctccaat atccccgagc attattttga gcaagtggta
    12241 caactaaaac gggaatttgg gattgaaatg gtgttagcca atgccactct gttgcctgcc
    12301 tttgagatta ttaaagctaa cgttggcaaa aaaccaatgg caatcggcac aggctcacac
    12361 cgtgcaatgg tggaattatt agaccaaaaa tttaacttac gtcaatatgt ttcggttatt
    12421 gtagattctg atgatgtaag caaccataag ccagcccctg aaaccttttt aaaatgtgcg
    12481 gaaaaacttg gcattgcccc acaccgctgt ttggtgtttg aagatgccga tttaggcgtg
    12541 caagccgccc tcaacggcaa tatgaacgtg tttgatgtac gtacgaatac gataactcac
    12601 tcaacccgtt aaaaatgata ggtttatatg aaaacagaat ggattaaaca tttaattcaa
    12661 caattaacca cgctttccaa agccatcgaa aactacttta ccagcggttc atttggggtg
    12721 aaattctacc cttttctaat gcacccttgt tttcgtaaaa gctgtgcctt tttgattttt
    12781 attattgcta tggtttcaag ttttagcggg ctattttatt tggtggcgga acacatcacg
    12841 attttattta gcgaaagatc gctcaccact tacttccacc atagcaccct tgaattgatg
    12901 attccagtcg gcacaatgat agatgaaaaa atcagcgaat tatcaccact ttcggtggta
    12961 atgcgttcaa tgtttgtgct acaagcagtc gtttttttct ttatttatgc aatcggcatc
    13021 acccacattg ctcacaacaa attgcgggtc atcggcttat tgctttcgct atgctttgcg
    13081 attggctgct cactagttgc cggtattcag ccaagcagtc gtggcgaatt cggcatttac
    13141 aatttagggg caagcattac gtttttaatc ggcaatttaa cgctgatcat cgcaggcttc
    13201 gatctctacc acccttcaat gcaatttttt aaacgcttta gcattggtgc gggcgttatc
    13261 ggggcaatct gtattttaat cacgattttc ctaccaaccc tgtttagccc gttaattgaa
    13321 cgagcaggta tttataccat tatgctgtgg gaaattttag ccggttttgc catcattaaa
    13381 cgcctgttga aattgccctc attcagacaa caaggataac caatgaaaca gattcccttt
    13441 attcaacgct atgctcaact gattgagcta ccgaccattt ccagccttgt tgccgaagaa
    13501 gatttatcga accgccgttt gattgaattg ctcgccactt ggctggcaga tttcggcttt
    13561 aaaaccgaga ttttagcggt agaaggcagc cgtaataaat acaatttact tgcgacctat
    13621 ggcgagggtg agggcggctt attattggca gggcataccg acaccgtgcc gtttgatgaa
    13681 ggaaaatggc gcttcaatcc attccaatta accgaaaaag caggcaaact ctacggctta
    13741 ggcacggcag atatgaaagg ctttttcgcc tttgtggtgg aggttgtgag ccaactcgac
    13801 ctaacccaaa tcaaaaagcc gattcgcatt cttgccaccg ctgatgaaga aaccacaatg
    13861 ctgggggcaa gaacctttgc tcagcacagc cacattcgcc ccgattgtgc gattattggc
    13921 gagccgacct cgctcaaacc gattcgagcc cacaaagggc atattggcga atcggttcgc
    13981 attaccggca gaagcggaca ctccagcgac cccgccaaag gcattaatgc gattgaatta
    14041 atgcaccaat ctatcggtta tttaatgaaa atgcgtgatg aactgcgaga gaaataccac
    14101 aatccgctgt tccaagtcac ccacccgaca atgaacttcg gcaatattca cggcggcgat
    14161 gccattaacc gcatttgtgc ctgttgcgaa ttgcaatttg atatgcgacc actaccgaat
    14221 atggcggtgc aagatttgta tgcaatggta aacgagcatt taaaaccgat gctggaacaa
    14281 tatggcgatt taattgaaat ccgccattta cacgatggaa ttccgggcta cgaatgcgaa
    14341 cactcggcac aaatcgtgca agtggttgaa aagctactgg gcgaaaaatg cgatgccgtc
    14401 aattactgca ccgaagcccc attcattcaa caactctgcc caacgctggt actaggcccc
    14461 ggctccattg aacaagccca ccagcccgat gagtttttgg aaatgaaata tatcgaaccg
    14521 acaaaagagt tattgactaa attgatttat catttttgtg gataaatcaa cagaaacaag
    14581 cgctcatttt cgccatactt tttgcaaaag aatcggcaaa aatgaccgct tgatatttag
    14641 tattgagtga cctataaact tccatacttc atcattgatt taaggagatt ctgttagata
    14701 ggtattaatc tctagctagg tcttggatac aaacggcgag aatgaattat agtaataata
    14761 tatacttttt ctaggtgtat ctcatagaca atacgataat tgcggcagaa tgtttctaat
    14821 gtgccatctt ctctacgtcg ccctattgta ggcataaatg caatgagatc gagtttattt
    14881 tgtaattgtt cccaaagtga aactgcgctc aaccaatgcc ctgtataatc ttctaccgac
    14941 tgtaaaatct caatgacatt agaccttgcg gtaagtgaca gctcccaaga tttaggcata
    15001 attaacctca aacaaatttt cattttctcg taattgctga cgtttctgca tatccgcaaa
    15061 taaatgattt aattcgttat tgatttgttc tttggtaaag gtttctcctc gagctattgc
    15121 ttcttgacca gctttaattt gctctgcaag aaactcatca tatccttgtt ctttgaatag
    15181 catattctgc tcctttgatt tgtgtcttga ttccactatg ttcaagacat agtttaagtt
    15241 taaatctacg ctcaaagcaa tgaagagtca agggaatcct tatgttgata gggtgtgcat
    15301 atttttcgag tcaaatgaat taaaaatcat cattacgatc acccactcat agattttatc
    15361 ttcctatcta aggtcatctt cttatatcaa acaagcggtc taaatttgca aaaaaatgac
    15421 aaatttagac cgcttgtgag ttacaaaaat ataaactaat tgagcttatc aattactgcg
    15481 cataactaaa tactttcacc actttggtta ctccacctac attgcgagcg gcttcggcgg
    15541 cggcatcagc ttggttttgg ctgactttgc ccattaaaaa cacttcgccg ttttcggtga
    15601 cgactttcac ttcggtggct tttacctcgc tatttactaa cagtttggat ttcacttggg
    15661 tggtaatcca gctgtcttgt gtaatctgtc caaagccgat tttttcgcct tggcggattt
    15721 cgttgtaaat ttccgtcacg ccctccgccc cagcagcgag gtttttcgca ttttccacta
    15781 cgtccatact tggtgcttgc ccgattaata acactttgcc gttgtaagcc accacgttaa
    15841 tgcgggcttc ttgtttgatt tgctcgtctt tattaatgtt gtaagcgact ttttcttcta
    15901 aaatttcatc atcaacttgc gtgccggtgg tgcgtgggtc tgtcgccact ttagttgcaa
    15961 ccgccgcaga agtcaccacc gccgtggtga tacaaccttg taaagagata aaacctaata
    16021 ctaataggct gccctttaat agtttatttg ctaatttgtt cataatctct ccttacgaaa
    16081 atagtaaatg gtcgataagt tcacataata aattcacata aaaatgatgg ctttcaatca
    16141 ccctcagttg attggttgaa ggggctgaaa tttcaatatc actttcatct aataagccga
    16201 gtgtgtggtc gttattactg cctgttaaag caataatatc taaatctaaa tgttgatttt
    16261 tcgccgtatg aatagcttgc aatatacatt cttcattacc cacaggcgaa aaaacaatga
    16321 agagatcacc ctcttttgca accgcctgca actgtttttt ataaacagcc tctaactcgt
    16381 tatcttgtgc cacaactcct gccaatacac cgcttaattg cagttgtacg gcagcaaaac
    16441 tcggtcttgc cagttcataa cggtgaagta agtggctgac caataattcg gcattaccgt
    16501 aagagcgacc gtgtccgcag acgataactt tatcgccacg caacaaacag gcaacaatgc
    16561 ggtttgccgc ttcacttaat ttagccggca atagctcaga ggcggaaatt tgggtttgaa
    16621 tactttcggt aaatctatct tggattttat ttaacattct ttctaaccta aaaagttggg
    16681 aatccacaca ggcgtttggt ttccttcaaa agcaaccaca tcaaaacggc aatttgcagt
    16741 ttctaaactt tggttttgtt taagcaacca catattagcg gcattttgcc atttttgttg
    16801 cttgcggtaa tcaatactct caacggctga accgaagcgg ttgcttttac gctggcgaac
    16861 ttctacaaac acaacggttt gtccgtcttg cataatcgga tccagttcgc cacctttaaa
    16921 tgcttggtta gcggcaacaa aacgaagccc ttgctgttct aaaaacactc gggctttttg
    16981 ttcataaaac gagccttgtt cccgtttatt aataagcttg ttgaatagct ccattgcgat
    17041 attgcatcca agataaacta cgttcaatat tacaatgttg tccggctttt aactcaccgg
    17101 ttaaacctga aattttgtag cccggaatat ggcggaattc attgaatttg gttgccaatg
    17161 accacgcatc agcccccatt gcgtataaac gcatcattga gaaatcgcta ttggctaaat
    17221 tctcggcttt tttatattca ctagaacttt gatcagctaa cagtggcact tcactaaatt
    17281 ttaccccttc cattgaagtg taaaaatcaa tgccgttatt tggcgaatta ctgcgagatg
    17341 aggtatagat cgctaaacga tcttttaagg ttgagctatc aataccttgt ttaatttcta
    17401 atacttgctc ggcattcccc aaaatatata aagctgcttt gctcacacct gcattttgaa
    17461 tagcggcaac ggcatcaagc ggttggttgt agtaacgcac atcagcatcg ctattggtaa
    17521 gctgacgcca gcgtttggca aaggcttctg ccgagcggtt gccgtagtca tcttgagggg
    17581 ccgcaacgat agcgacacta ttaccgtctt gataaatttt ttccgcccct gattgtgcct
    17641 cagattcagg agataaaccg tagtaacaca cctgagcaat attacgcaca ttttcagtgg
    17701 cattcagtgc caaaatattc acgttttgga tttctgggct aagtagcatt tcatcaacac
    17761 gagatttgag caatggcccg acaatcacat ttgccccttg ctgttttgcc tgtgaaatta
    17821 aggaattaac atcagatgaa tcggtatcaa aagtttgcac tgcggttgag tcatcagcct
    17881 tagcatcatt aaaaccacgc ttgataatat cacccaaaat ttttgcatca ccacttagag
    17941 gcaatagcaa tgcgacactg tttaactggg tttgttggaa attactcacc ccttgtaatt
    18001 ccgttggcat tacggcaacc gcactatggc tcgggtattg ggctttccaa ttattaattg
    18061 cttgtggcat ttgtgccggt gtcgtcacat tttgattata gatattaatt aatgccaacc
    18121 aaccagcaag ctccatctca cccgcttcag gcacagtttt ttccagcatt cctcgatttg
    18181 catcacgcaa ggtttgccaa ataatatcgt tattttcttg gcgttcacgg ttcattttat
    18241 agaaattgtt aagttgcgat cttgcacgca caatgccaat cacatctttc tgattggcag
    18301 caatacgggc ttgggtttga atataacgca aacgctgtgc cgaacttaat agcggatctt
    18361 gaatggcttt taattggctt gttgcttgct cgtttttccc ttgtaaggcg gcaagctggg
    18421 cggaaaccaa ggcatactct aacttttgca cctcgttcat ctctgcggtc agaatttcac
    18481 taaaggtatt ttgagcctca tattccttat tttcatcaat taatttgcgt acagctaaaa
    18541 gttgatacga aattttatct tccgcttctt tggtttgatc tgctttatta atatagaatt
    18601 ccgagcttga ataggcttca tttttaatgg attcggtgac aggatttacc gatgtacagg
    18661 cagaaatgaa taatgcaatc gccgttggca ccaatgcctt tttcattgta tggtttaaaa
    18721 tagttgccat tgtcagatcc tcaatagaat ataatgtgct aaatttaatg tgaaatctta
    18781 cttatcaaac gagctaaaag caaatgaaaa acagacaaaa ttcatctgga atcaacccaa
    18841 attacggaat tttatatatt gttgccacgc ctatcggcaa tttaggcgat attacccaac
    18901 gggcgttaga caccctttca tctgtcgatt tagtcgccgc cgaagacact cgccacagcg
    18961 gtttattgct gagccactac ggcattaaaa aaccgttttt cgccttgcac gaccataatg
    19021 aacagcagaa agcggtcgtt ttagtcgaaa aattagcaaa aggggaaaac attgcgttaa
    19081 tttccgatgc cggaacgcca ctgattagcg acccgggctt tcatcttgtc cgtcattgcc
    19141 gccaagccgg ggtaaaagtt gtgccgatcc ccggggcttg tgccgctgtt actgccttat
    19201 gtgcttcagg catagcttca gaccgttttt gttttgaagg gttcttaccg gcaaaaacaa
    19261 aatcccgttg cgataaactt accgagcttg aaaacgagcc tcgcacactg attttttatg
    19321 aatccaccca ccgtatttta gacactcttg ccgatatgca gactgttttt ggcgaagatc
    19381 gctatgtggt aatggcgcgt gaaatcacga aaacgtggga aaccatttat ggagatcaac
    19441 tgggtaactt aattgaatgg ctaaatgagg atagcaaccg aattaaaggc gaaattgttc
    19501 tggtggttga aggtaaaccg caaagtagtg aggaagcctt ttccagccaa gcgatcaaat
    19561 tactgacatt actctgccaa gaacttccgc ttaaaaaagc cgctgccatt gtggcagaaa
    19621 ccttcggcta taagaaaaat gccctgtatc aatatggatt ggagcatttt gagtaacaga
    19681 caagcggtca gattttgtga gttttttgca gattggcact cccctctctc tgaaaaatgt
    19741 ttctgaacga aacatttccc ggtctcaata ctcgctacgc tcgctccttc ggagccgttg
    19801 gcaaagccaa cgttcaaatg taaacatttg tcccataagg ggagagagct aaattattcg
    19861 cttgtcgacc cctctccact cgtgggagag ggacagattc ttcttcgttc agaagaaaaa
    19921 tcagggagag ggggaagttt ctcgcactaa attccgataa gcatatgcca taatcgcaaa
    19981 catcaacagc aagtaaagcg gtaataattg aatgctgata gcattagcaa taaagccgaa
    20041 aatcggtggc aataacagga cgccgatata ggcacttgcc atttgcacgc cgatcaccga
    20101 ttgagacttg tcctcgccga aaaacgcagg ggtcgaatga attaagcacg ggaaaatcgg
    20161 ggcacaacct agcccgataa taattaaact tgccagcgta acatatttgc ctaacggcaa
    20221 gcacagtatc gcaatgccga ctaagatcaa ggctgaacca agtttaatca tttgtctgtt
    20281 gctaaattta agcgtcaaga agccacttac gcctctgcca acggtaatgc cgataaagaa
    20341 aatactgccg aacgcagccg cttgttctaa gccgacatct ttaaccatta caaaatagct
    20401 actcgcccac agtccggcgg tttgttctac gccacaatag ccaaaaaaag ctaaaatgcc
    20461 atatttcacg cccggaattt ttagcgtttc ttttaagctc atcggttttg ccgaatggtt
    20521 gatttcagcg gtaatctgct tgcgtaattt ccaaaaaggc agtgagcaaa acagcattag
    20581 cgttagcccg atttgtaaca ttgaaatggt gaaatagcct gcctcccagc ctcgcccttg
    20641 caataaggcg tagcctaaaa tgtgcggccc gatagaagct ccaacgcccc acatacaatg
    20701 cagccagctc atatggcggc ttgcgtagtg aactgctaca tagttattca acgccgcatc
    20761 aaccgctcca gcccctaagc cgtaaggaat tgcccataaa cataagatcc agaaagcatc
    20821 actgattgaa aagccccaca atgctaaagc cgttaaggca acgctgatga ccattacttt
    20881 gcctgtgccg agatggtagg tcagtttgtc cgacattaag ctagaggtaa tagtgccaat
    20941 cgacataatc atcgagacca caccggcata ggaaagcgga acagcaagct gttggtgcat
    21001 tgacggccac gccgagccta aaattgcatc aggcaaccca aggctgataa aagagagata
    21061 aataatagcg agtaggaggt tagtcatagc ttacaatcgg tcacaaaaag catcgctttt
    21121 tgaacgttgg ctctgccaac gggagcgaag ctgtgaacaa tccttacaag gattgtgaat
    21181 aatttttgat aaattttttg taaaaaaatg gcttaaggag accttaagcc aaattttatt
    21241 atttcacttc tgccaaatag gccttattag cacggtcaaa ggtgtctaat acggctttgc
    21301 ttggcattgg cgtgataagt gataccacaa tgatcattag ggtagcagca ataaagcccg
    21361 ggatcatcga gtaaatttcc ggtaaggcga gcttaagtgt aatatcgccc caaaaatgca
    21421 cgattaacgc accggtcagc attccggcaa tcgccccaaa accgttcata cgtttccaga
    21481 atagtgaaag caataccaca ggcccaaatg ccgagccgaa acctgcccac gcattacgca
    21541 ctaagccaaa tactttgctg tccgggtctt gggcaatata aatagctaat gctgccaccg
    21601 caagcaccat caagcggctt aaccaaacca gttctttatc ggaggcttga gggcgtaaaa
    21661 tgcctttgta taaatcttcg gtaatcgcac ttgaacaaat cagtaattga gcggaaaggg
    21721 tactcattac cgcagcaaga atggcagata ataaaatgcc ggctacccaa gggttaaata
    21781 acaatttagc taattcaatg aaaatttgtt ccggattttt gctgatattg ccgacttgct
    21841 ccgggttgcc aaagaaatat gccataccaa aataaccaat gcctattgcc cccagtaagc
    21901 agataatcat ccaagtcata ctgatacggc gtgcattttc aagagacttc acactttctg
    21961 ccgccataaa acgcaccaca atatgcggtt gtccgaaata acccagcccc cacgccatta
    22021 agctgataat gcctaatacg ctggtgccgg tgaaaatgtc gttgtagtct ttttgtgcca
    22081 tctcgcctgc acggtcgatt aaggcttgca tttcatcaaa accacctaag ttatacatca
    22141 caaaaaacgg ggtgagaatc agggcaaaaa ccattaatga agcttgaata gtatccgtcc
    22201 aacttactgc taagaaacca ccaataaagg tgtaaagaat ggtagcaaca gccccatacc
    22261 aaattgcttg gtggtaaggt aagccaaata agttttcaaa taccctcgca ccggccacaa
    22321 cgcctgatgc acagtaaatt gcaaaaaaga gtaaaaaaat gaccgctgat aaaatcttaa
    22381 ttaaacgggt tttatcgcca aaacggttat gaaaatattc gggtaaggtt aaggcatcgc
    22441 cactgtgttc tgtatgcgag cgtaatctgc ctgcgactaa tttccagttt agataagcac
    22501 cgatagttaa accgattgcg atccagcctt cgatcaaacc gcctgcataa acggctccgg
    22561 gtaatcccat cagcaaccag ccggacatat ctgatgcacc ggcagaaagt gcggtcacaa
    22621 agctacctaa acggcgaccg cctaaaatat agtctgaaag gttattggta acacgatagg
    22681 caataaagcc gatggcaatc attcctagaa tatagacaac aaacataatt gttgttggat
    22741 caagaccaaa cattattaat gaatcctcaa gatttcttat tgtataaaga ttaaagtgag
    22801 taaagggtaa aagattacct gaaataatca aaatggcaac acaaaattac cgtccgccca
    22861 gctcagctga aattttttct gctgtttctt gaatagccgg tagtagattt tcccgcccca
    22921 gctgatttaa acgagcagtt gaaagcgaaa cagaaatcgc ataatggact ttttgttggt
    22981 gatcaaaaat cgggcaagca atacaagaaa cccctaattc attttcttcg ttatccattg
    23041 caaaaccttg acggcgaatg gtttccagct cggtttgcat tccgtcaatc gtggtgatgg
    23101 tattgaccgt cagtttttga atgatgtccg atttagtctg ccaatattgt ggaatgtaat
    23161 ctgccgaacc ataagcaaga aacagttttc ccattcccga gcaatagagt tgcatttgtt
    23221 gcccgatata ggctcgggta cgcatcattc cggtggtagc ttctaattta ttgattaaaa
    23281 tagcgtgatc gttttcccgc atcgcaaaat ttaccgtctc gcctaaggtt aaatttaggg
    23341 cttctaaatg tggggcggca atatgcaaaa tgttaatcga acttaaggct cgctgcccga
    23401 ttgccaaaca tttggtggtt aaacgataac tgcccgcagt cggtgcaggg cggacgtagc
    23461 cctcttgttg taagccttgt agcagacggt gaaccgtgct tttgttcagc cccgaaagct
    23521 cggctaaatg ggcaagcgga cagccgtttg ggaatttcgc taacaattcc aatagtgtta
    23581 agccacgaat taaactttga tttccactcg attccttttc tttctttgca ttcatttggc
    23641 tgctcccaaa ataatatgat ctaacggcat atcccaactc tcaatcggta attgttcgac
    23701 ttgctgacat tcgtgtgcca aaccgacact aatcagatga ggtgcttgag caagggttct
    23761 atcataaaag ccacctccca ttcccagccg atttccggct ttatcacaag caacaagtgg
    23821 ggtaaaaatc atctctaatt cttgcaacgg aaggatattt ctaacatcta atatcggctc
    23881 ttgaatcccc aagcggttaa attttagaat agttttgcaa ttgtaattta caaacaataa
    23941 ttgaccgctt gtaaaagggt gcaacagcgg cagatacagc tttttgccct gttgaagtaa
    24001 ttgttccatt aaaggaatag gagaaatttc accgttaaaa ggcaaataaa aggcaatatg
    24061 tgaggcttgg taagattcaa tcaatgaaag agcttgagga ataatggatt cggctgcttg
    24121 agtttgctga ccggcagtta aactttgccg tttaagccgc attgattgcc gtaattggct
    24181 acgaagatcg gttaaagatg attgattcat ataaagaccc gagatgccgc taccagtaat
    24241 ggtccttgaa ccagtcggtt caagggagtc aaacttaact gcttttaggc ttcttactcc
    24301 taattaaatt agggtaagct tgctcaccag cgttagatgt ccaactcaaa gtttcaaatt
    24361 atcggctcag ggacgtaact cgtaacgcac accccaggca agacttatag taacggaatt
    24421 tgatgatttt tcctagtatt taatcccaca aaatgcaaat tctcaatctt tttggctcta
    24481 ttcctaatca attcgattaa aaattaccta attggattga aatttgccaa gcgaattatc
    24541 taactgctca atacaagcca ccaacacatt tttattttct gcattttggc gttgggcttg
    24601 ctccagttca taatttaaat tcagtgccac aatcgctaac actttttcaa gctgaataat
    24661 gccggactgc tctttcaata ccaccacacg ctcttccaaa cgctgtgctg aagccagtaa
    24721 atgctcttgc tgttcaacag ggcattgcaa gcgtaaaacc tgcccaaaaa tctgtagttc
    24781 gatattattt gccgacataa atacgaaatc ctcacttaat cgcaaaattt ttgctatatt
    24841 atgccattct ttagcaaaat cacaaataat cccattatgg ctatcacaga ttcccaacaa
    24901 tttaaacaac tggtatcaca attacaaatt gatgatacac cggcagagtt tcacggtttt
    24961 ttatgcggtt taattgccgg cggtattcaa gatgagtctt ggaaaaccct cacctaccaa
    25021 tttaccaatg acggacacgc attttccatc gagccgttaa acactttaac cgatttttat
    25081 cagcaattaa gtgaaagctt ttcagaagcc aacacgctgt ttagcctttg gttgccacaa
    25141 aacgaagaag atggttttgc cttagctgat ggtatctccg aatggacaaa cagtttctta
    25201 cttggacttg gcgttgctca acctaaatta caacaagaaa ccgatgaggt tggcgaggca
    25261 atcgatgatt tagatgaaat cgccaaacta ggctacagtg acgatgataa taacgaggaa
    25321 ctactggagg ctggcgaaga agtgttggaa tatctgcgag ttttagcctt attcttgcac
    25381 agccattttg ctttaggcgt gccgaaaacc gaagaaaagc caccattaca ctaatgaata
    25441 aatacaagcg gttcaatttc atctctattt tgcaaatata ttatgcgggg cgaaaaatat
    25501 ttcgccccta ccaaaatcaa aggaaaaacc aatgtcagaa ttaaaaaacg atcgctattt
    25561 aaaagcgtta ttgcgtgaac ctgtggatat gaccccggtc tggatgatgc gtcaagccgg
    25621 gcgttatttg ccggaatata aagccacccg agcagaagcc ggcgatttta tgtcactctg
    25681 ccgtaacgct gatttagcgt gtgaagtcac cttacaaccg ctacgccgtt atgaactcga
    25741 tgcagctatc ctattttccg atattttaac tgtgcctgat gcaatgggat taggtttaag
    25801 ttttggtgca ggtgaaggcc ctaaatttgc ccgcccggtg gcaagcctca atgatgtcaa
    25861 tcagctaccg attcctgatc cggaagacga gttgcaatat gtaatgaatg cggtgcgtac
    25921 cattcgccga gaattgaaag gcgaagtgcc actaattggt ttttctggca gcccttggac
    25981 actcgccacc tatatggtgg aaggtggttc aagcaaagca tttaccaaaa tcaaaaaaat
    26041 gctttacgct gagcctcaca ttctacacaa attgctggac aagttagctg acagtgtcat
    26101 cttatactta aatgcccaaa tcaaagccgg tgctcaagcg gtgatggtat tcgacacttg
    26161 gggcggtgta ttggctcacg aggattacaa agccttctca ttacactata tgcacaaaat
    26221 tgtggacggc ttaattcgag aaaatgaagg acgtaaagtg cctgttaccc tattcaccaa
    26281 aggcggaggc ttatggttag aagcgattgc agaaacgggc tgcgatgccg ttgggctaga
    26341 ttggacagtc gatattgccg atgctcgccg ccgtattggc gacaaagttg cgttgcaagg
    26401 caatatggat ccaagcgtgc tgtatgcaag ccctgaacga atcgaacaag aagtaaaaaa
    26461 cattcttgcc ggcttcggca acggcagcgg acacgtcttt aatcttggac acggcattca
    26521 tttagatgtg ccggtggaaa gcccgaaagt gtttgttgat gcgattcaca actactcgaa
    26581 gcagtatcat aaataatgga taaaatgccc tctctccttg tgggagaggg acagattttt
    26641 ctttgttcag aagaaaaatc agggagaggg gcaagcggtc atttttatac agaattttgc
    26701 aaaatcgttc ccttctctct gaaaaataaa gaaggaaata caatgagaaa cccgattcat
    26761 aaacgcatgg aacgtttcga gccttggcaa aacaccacat ttatggcgtg cctatgcgaa
    26821 agaatgtacc ccaactatca gcttttttgt gaagtaaccg aacagcctga aaaagctaag
    26881 gtattccaaa atattttaaa tttagtctgg gaatatttaa ccataaaagg ggcaaaaatt
    26941 aatttcgata accaactgga aaaattagaa gaaatcattc ctgatgtgaa cgaatatgcg
    27001 ttttttggtg tcttacctgc acaggaagct tgcgaagccc tttctgaact tcttcacagt
    27061 attatcgctg gttcaaccct tgaacaagca atccgcatca gccaaatttc attaggcaca
    27121 gttgccagct atttggaaat gcaacaagat aaagaactga acgagcaaga gctaaagaat
    27181 tctgaagaaa ttcaagaaga actggacgta cagtggcaaa tataccgctt gctaaacgaa
    27241 tgtgaaaaac gtgatcttga tctcattttt gaacttaaag atgaaatcag aagcagcggg
    27301 attagtaata tcgggttaaa tattaaccaa tagcattgat atttgcaaaa tcttgcttaa
    27361 taatactttg agaaatctta actttgaatt aagctatcgc aaggtttcaa taacttctca
    27421 gacgttttac gtcatttatt aaaaacacat atcttagagg ataaaactat gaacaaaact
    27481 gagttaatcg atgctatcgc cgctggtgca aacttaacca agaaagatgc taaagcagca
    27541 ttagaagcaa ctcttgatgc aatctctgca agcttaaaag caggcgacgc tgttcaatta
    27601 atcggcttcg gtacttttaa agtaaatgag cgtaaagcac gtactggtcg taacccaaaa
    27661 actggtgaag agatcaaaat tgcagcagct aaagtacc
//
LOCUS       DANLZD010000015        27485 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.015, whole genome shotgun sequence.
ACCESSION   DANLZD010000015 DANLZD010000000
VERSION     DANLZD010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 27485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27485
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.015"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            94..1320
                     /locus_tag="PXE26_000454"
     CDS             94..1320
                     /locus_tag="PXE26_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
                     /protein_id="HDL5593070.1"
                     /translation="MAMPSQRFSLTWVLNLFGTAVGAGVLFLPINAGMGGFYPLIIMT
                     LLVGPMTYLAHRGLTRFVLSSKYKGNDITAVVREHFGEQAGKLITLLYFFAIFPILLI
                     YGVGITNTVSSFMENQLHIAPPSRAVLSFMLIAAMIGVMLLSEQVMLKITTCLVYPLV
                     LILLGLSIYLIPQWNTAALQQMPTTGDFLTTLWLTIPVLVFAFNHSPAISSFALSQQK
                     YYQDDKKAEIESAKVLRSTAFILVLFVMFFVFSCVLTLTPEELAQAKVQNISILSYLA
                     NKFDNPIISYFGPLVAFLAIGSSFFGHYLGAREGLEGLVNQMRKEPIDPSKFRKITAI
                     TFLIILWIVATINPSILGFIESLGGPIIAMILFIMPVYAVYKVPALARFKGEFGHLFV
                     LVMGCIAISAIVYGLL"
     gene            1377..2753
                     /locus_tag="PXE26_000455"
     CDS             1377..2753
                     /locus_tag="PXE26_000455"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000626422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HDL5593071.1"
                     /translation="MISVFDMFKVGIGPSSSHTAGPMKAAKEFVDELQNRKFLNKIDR
                     LRVDVYGSLSLTGRGHNTDIAIIMGLMGYLPHNVDIERIEQTIENLKQNKQLIIAESS
                     VEPKVIAFDFYEDMPFHRDFLPRHENGVKFSALSGEELLFQNTYYSIGGGFIVDEANF
                     EQVKNSDLSVPFPYQNAADLLAHCKNNGLPLSSLVWKNELALRSRVEISDYLAMIWNT
                     MEACIERGLNTEGLLPGPLKVVRRASGLRRMLEANSKFNTDPMQIIDWVNMFALAVNE
                     ENAAGGRVVTAPTNGACGIVPAVLAYYQKFIAQLNQDTIERYLLTTSVIGSLYKMNAS
                     ISGAEVGCQGEVGVACSMAAAGLTEIMGGSAEQVCMAAEIAMEHNLGLTCDPVGGQVQ
                     VPCIERNAIASVKAINASRMALRRTSSPQVSLDKVIETMYETGKDMNAKYRETSTGGL
                     AIKILPCD"
     gene            complement(2808..4397)
                     /gene="purH"
                     /locus_tag="PXE26_000456"
     CDS             complement(2808..4397)
                     /gene="purH"
                     /locus_tag="PXE26_000456"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005821463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HDL5593072.1"
                     /translation="MAIQQALLSVSDKKGIVEFARGLSARGVKLLSTGGTAKLLAEAG
                     LLVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGTDDEVMNQHGIERIDMVVVNLY
                     PFAQTVANPNCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVNNNDFDAILAEMDQHQ
                     NSLTLETRFNLAIKAFEHTAQYDSMIANYFGQKVPPYQGAEEEDLTQPSGQFPRTLNL
                     NFVRKQTMRYGENSHQNAAFYVENELKEASVSTAKQLQGKALSYNNIADTDAALECVK
                     EFSEPACVIVKHANPCGVALGKNILDAYNRAYQTDPTSAFGGIIAFNRELDGETAQTI
                     ADRQFVEVIIAPTVSASAKEVLATKKNVRVLECGEFSEAVKRLDFKRVNGGLLVQDAD
                     QGSVSIDDLKVVSERKPTEAELKDLLFCWKVAKYVKSNAIVYAKDGQTIGIGAGQMSR
                     VYSAKIAGIKAEDEGLQVVGCVMASDAFFPFRDGIDAAAKVGITCVIHPGGSMRDQEV
                     IDAANEHGMAVVLTGMRHFRH"
     gene            4569..4838
                     /locus_tag="PXE26_000457"
     CDS             4569..4838
                     /locus_tag="PXE26_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDL5593073.1"
                     /translation="MINHNLADFVFEYFTENNLKAGTLRYRYIKENVIDAYSTRVDDA
                     FQGKGIAGELYNALIAFAQEKGLKIKPSCSYIEVKMQRSHRDLIA"
     gene            complement(4925..6370)
                     /gene="dacB"
                     /locus_tag="PXE26_000458"
     CDS             complement(4925..6370)
                     /gene="dacB"
                     /locus_tag="PXE26_000458"
                     /EC_number="3.4.16.4"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HDL5593074.1"
                     /translation="MIFKNFTRAFLNKFILSTLLIPSITQAEINTEELLNTLPAGTSV
                     SFIAKNLDTNQIITQYQSDIFMLPASTQKVFTALAAKLTLNDDFRFQTALLTNGKVEN
                     GVLKGNLIARFSGDPELTSGQIYQLMSKLKQQGINKIEGDLILDPSVFASHDKASGWI
                     WNDLTMCFNAPPAAINVDHNCFYVTLNADQPIGEFAKVNVPSAYPVQVFSSAYIVEPK
                     EAPFCQLDVVVHDNNRYQIKGCMARQSQPFGLSFSVQDPTNYGANMLKAQLKSLKIAF
                     NGQVKEPLTAQNGTLLAEHYSEPLPVLLKKMMKKSDNQIADALFRTVANKQHNRPASF
                     QLGSYVIRQLLKTKANIDFKNSVVADGSGLSRHNQVSSRTMLETLEYIAQNEESLKLF
                     ETFPIAGVDGTISGRGSISTEPLAKNLIAKTGSLKGVYNLAGFMKNARGERIAFVQFI
                     NGYSTGELESKTKRAPLNTFENKFYMALFNE"
     gene            6467..6943
                     /gene="greA"
                     /locus_tag="PXE26_000459"
     CDS             6467..6943
                     /gene="greA"
                     /locus_tag="PXE26_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HDL5593075.1"
                     /translation="MKQIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKE
                     NAEYHAAREQQGFCEGRIQEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEE
                     VTYRIVGDDEANIKEGLISVNSPIARGLIGKEVDDSVSITTPGGKVEFDIVGVEYI"
     gene            complement(6999..7415)
                     /gene="ndk"
                     /locus_tag="PXE26_000460"
     CDS             complement(6999..7415)
                     /gene="ndk"
                     /locus_tag="PXE26_000460"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HDL5593076.1"
                     /translation="MIQQTLSIIKPDATRRNLIGKILAQLEENGLTIKALKKVHLTRE
                     QAEGFYAEHKGKDFFEPLVEFMTSGSIVVSVLEGENAISHYRALMGATNPDNREKGTI
                     RDLYALSMRENSVHGSDSEESAKREIAYFFVPSEIV"
     gene            complement(7425..9503)
                     /gene="metG"
                     /locus_tag="PXE26_000461"
     CDS             complement(7425..9503)
                     /gene="metG"
                     /locus_tag="PXE26_000461"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HDL5593077.1"
                     /translation="MANQKRKMLVTCALPYANGAIHLGHMLEHIQADIWVRFQRMRGN
                     EVHFVCADDAHGTPIMLNADKLGITPEQLIEKAKADHEADFASFNISFDNYHSTHSEE
                     NRQITTDIYKTLKANGFIKSKVISQLFDPEKNMFLPDRFVKGTCPKCKAEDQYGDNCE
                     VCASTYSPMDLINPRSAVSGATPVVKESEHFFFDLPSFEGMLKEWTRSGSLQPEIANK
                     MQEWFESGLQQWDISRDAPYFGFEIPDAENKFFYVWLDAPIGYIASFKNLCDRAGIDF
                     DEFWQKDSTTELYHFIGKDIVYFHSLFWPAMLEGSGYRKPTNVFAHGYVTVDGAKMSK
                     SRGTFIQANTYLKHLDPECLRYYYAAKLNDRIEDLDFNLDDFVQRVNSDIVNKLVNLA
                     SRNASFIAKRFEGKLAEKLDDEALFNEFTAQAETIANFYENREFNKAIRAIMELTDKA
                     NKYIDDKAPWVIAKEEGKEAELQAVCSMGIELFRVLMSYLKPVLPKLAERAEAFLQSE
                     LRWDNIATPLFGHTVAPFKSLFSRLEKKQIDAVIDETKALFAEANKKTENQTKGTQKV
                     EQQAVEKQENIAVEPISPEITIDDFAKLDLRAAKVLNCEAVPKSDKMLRFELDLGDHQ
                     RQVFSGIKAAYPNPEALIGRFVIVIANLAPRKMSFGMSEGMILSAGTGGANLFLLDAD
                     SGVQPGMQVK"
     gene            9715..10686
                     /gene="menC"
                     /locus_tag="PXE26_000462"
     CDS             9715..10686
                     /gene="menC"
                     /locus_tag="PXE26_000462"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HDL5593078.1"
                     /translation="MRQVKLYRYQLPIQTGVVLRKQPLKERQGVLVCLQEQEKVGWGE
                     IAPLPSFSQESLEQAENQAVNWLKAWQKGEPETLEQLFPSVAFGLSCALAELNNELGE
                     QANNQSAVLCYGDLEKLHTAFSQHTNPIGKIKIGLNPEQEGEQANLLLHTFPNLRLRL
                     DANRLWSLEQAVKFAEKIANEHKPRIQFIEEPCQALELSRQFATQTDIAIAWDETVRE
                     ANFLVKKEPNLTAIIIKPTLVGSLEKCVNLIQQAQKQGLVAVISSSLESSLGLTQLAR
                     IAQQYTPNSVPGLDTLNLMQHQLLRDWHDSSLPLVGLESEFVREVVV"
     gene            10931..11632
                     /gene="rsuA"
                     /locus_tag="PXE26_000463"
     CDS             10931..11632
                     /gene="rsuA"
                     /locus_tag="PXE26_000463"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase RsuA"
                     /protein_id="HDL5593079.1"
                     /translation="MRLDKFIAENTGLTRSQAAKVLKSGVVTVNGNIEKSGAAKISQE
                     DEIYYEDQKLEWVEEGQYFMLYKPQGYICSHDDGEYPTVFQFFDYPLMTKLHTAGRLD
                     VDTTGLVLLTDDGKWSHRITSPKHHCEKTYLVTLADPVEDFYAQRLAEGILLRGEKEP
                     TLPAQLEILDDYNVNLTISEGRYHQVKRMFAALGNKVEALHRWRIGDVVLDERLEEGE
                     FRSLTSEEIASFNGK"
     gene            11622..12803
                     /locus_tag="PXE26_000464"
     CDS             11622..12803
                     /locus_tag="PXE26_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family multidrug efflux MFS
                     transporter"
                     /protein_id="HDL5593080.1"
                     /translation="MESRRPSLSFFIILGMMAMLPPLAIDMYLPSFLDIARDLAVSQE
                     KVQTTLAVFTLGFGAGQLFWGPMADSFGRKIIILIGLVGSAIAAYFLTQVQNIETFYL
                     LRLVQGLCAAAPAVVLGALVRDLFERNLFAKLMSVIMIISMLAPLLAPIVGGYIAKYF
                     HWHSIFYVLVAMGILCVVLISWKIPETLAPEKRLPLSFGKTLSNFAILLKHRPTLGYV
                     LIGGLTFAGIFCFLTSGSIVYIGLYGVSQENFGYFFGLNMIVMVTMTAINSKMVVKVG
                     SETMLRIALAMQLLAGIWLALVAIFDLGFWAMAIGIPLYIGMLSTIGSNASAAILEQF
                     PQMAGTANGVAGTARFGVASLVGAGLSHIAVTSAAPMLLAMALCVMLAGVVYYFLCYK
                     R"
     gene            complement(12943..14262)
                     /gene="rlmD"
                     /locus_tag="PXE26_000465"
     CDS             complement(12943..14262)
                     /gene="rlmD"
                     /locus_tag="PXE26_000465"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HDL5593081.1"
                     /translation="MAIFYSEKSAKKPIKSPACQKATIQSLDYQGLGIAKINGKTWFI
                     ENALPDEQVEFKVLEEKRQYGRGQAVKILKKSANRRMPSCELYGQCGGCQMQHISLEL
                     QRKAKQQALFQRLQKLQTHAIDVQPMIIGNDKHYRRRAKLSIAIQQGKAVIGFRLQNS
                     NQIIPLAHCEVLVEPLANLLPKLKHLIENWQQPKKLGHIELVSADNTIALFFRHLGAL
                     SAQDNHNLRQFATQEQLSLFVMTSENHIEHLCGERPYYQIQGLKLHFSIRDFIQVNAT
                     LNEKMVEKALEWLELSNQDRVLDLFCGMGNFTLPIAERAKSVVGVEGVEPMVQQAREN
                     AVTSGLKNVEFYQTNLDEPFSDKPWAKEPFNKVLLDPARNGALFCLDHLTSLNPERIV
                     YVSCNPATLVRDAEKLLQLGYRLEKAAMIDMFPHTGHLESISLFLKS"
     gene            14347..15672
                     /locus_tag="PXE26_000466"
     CDS             14347..15672
                     /locus_tag="PXE26_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase
                     family protein"
                     /protein_id="HDL5593082.1"
                     /translation="MISSVWNERYLADKKREQDHRSPFQRDRARLLHSEAFRCLQAKT
                     QIHAVGEDDFYRTRLTHSLEVAQIGSSLREKLLADVEGFQAVCSEQEFAKNMANLTAL
                     LPDHSLVESLCFAHDLGHPPFGHGGEMALNYKMYAFGGFEGNAQSFRIMTQLEPYTET
                     AGMNLTRRTLLGVMKYPALLSQTSPIEPAEMSEARHINLHHFPQSKGIFDDNNHFFEW
                     VLAPLSEKDRRQFCTVQPNQDPKQPNKTQYKSLDCSIMELADDIAYGVHDLEDAIVGG
                     MVTPQSWQNAEKLLAECQSDWVKQRLPEIREKLFSQHRYERKDVIGALVNHFITNVRW
                     KALPEFDEPLLRYNAYLPESVACVLKILKDFVYQYVICDAKTQRVERKGQRILMELFD
                     ILSSDPMRLLPNNVRERWKNAEESKRARVICDYLAGMSDGQAFKLFESL"
     gene            15793..16092
                     /locus_tag="PXE26_000467"
     CDS             15793..16092
                     /locus_tag="PXE26_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593083.1"
                     /translation="MRFLPSEIYQPRGELVKADRQGNGEFEVEYRVSGNDVRGLAKSA
                     IAHAKRKGFHLVESDIHRDDADLKFKRGDQELDIEIEVKGRNRIEYKADLDLDKN"
     gene            16253..19165
                     /gene="rapA"
                     /locus_tag="PXE26_000468"
     CDS             16253..19165
                     /gene="rapA"
                     /locus_tag="PXE26_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-associated protein RapA"
                     /protein_id="HDL5593084.1"
                     /translation="MFLVGQRWLSESENNLGLGIVTSVDHRTVTINFPAAEEERVYAI
                     AVAPLTRVQFQAGDRINSIDGWQLEVSEVVENQGAVIYLGKRVDNGEEAVLPEMLLDH
                     KISFSKPQDRLFSAQIDRSDRFALRFNALQHQQAQYQSPLRGLRGIRASLIPHQLHIA
                     KEVGQRLAPRVLLADEVGLGKTIEAGMILQQQLFSGRAERVLVLVPESLQHQWLVEML
                     RRFNLKFSLFDEERCSDFDKQDENGDDVSENPFESEALVITSLNWLETSPQRANQVLA
                     ADWDLLIVDEAHHLEWSETESSIGYQLVERLSQQIPAVLLLTATPEQLGQESHFARLA
                     LLDSDRFYDYAEFVQEQAQYKPVADAVSSLLSDKPLSNDEQNAIAELLSEQDTEPMFR
                     AINSKKSDENDRLQARQELISELIDRHGTSRVLFRNTRQGVKGFPHREYHQISLEMPK
                     QYQNALKVMGMMGSVSQSDLLYPEYLFQRMNPNAKWAEFDPRIDWLITFLKNHRDEKV
                     LVICKQADTAIALEQVLREREAIRSAVFHEKMSIVERDKAAAYFAQQEEGAQVLISSS
                     IGSEGRNFQFAKDLVLFNLPDNPDLLEQSIGRLDRIGQKNDIQIYVPCFNLSAQQMLA
                     EWYHKGLNAFEETCPMGTAIFRELGEELQQFLQKPELSAQFDDFVAKTYKRQQYLKAE
                     LEKGQDRLLELNSNGGEAAQQLANDIAKEDNNPQLVNFALSLFDVIGVEQEDLGEQSI
                     VISPTGHMLVPDFPGLSEDGTTITFNRELALMREEVEFLTWDHPMIRNGIDLITSGDI
                     GKSAISLLVNNKLPAGTLLLEALYVVEAQAPKGLNLTRFLPPTPIRVLVDNKGNNIAP
                     QVSFAGLERQLKPVNKQMANKIAKMARADIEKLIKASEKAVEPQVQQVIETAKFEANS
                     KLKAELHRLESLKMVNKNIRADEVEALEQQLNASLAQLETANYRLDSLRVIVSNKA"
     gene            19292..19588
                     /locus_tag="PXE26_000469"
     CDS             19292..19588
                     /locus_tag="PXE26_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL5593085.1"
                     /translation="MYIDLQYAVPLLFEYDPNKSQINLAKYGIDFEQAKLLWEDERKV
                     VLEACIEPELRYFLIGKIYDKYWTAFFTPRNDVIRLISVRRSRKKEISYYEKYH"
     gene            19572..19814
                     /locus_tag="PXE26_000470"
     CDS             19572..19814
                     /locus_tag="PXE26_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HDL5593086.1"
                     /translation="MRNTISAEELERIFDEGKEDILQYCDLSTAHRPGQMKRVNVDFP
                     NWMVEALDKQARHLGVPRQALIKMWIAEKLPVQSPR"
     gene            19826..20494
                     /gene="rluA"
                     /locus_tag="PXE26_000471"
     CDS             19826..20494
                     /gene="rluA"
                     /locus_tag="PXE26_000471"
                     /EC_number="5.4.99.28"
                     /EC_number="5.4.99.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA pseudouridine(32) synthase/23S
                     rRNA pseudouridine(746) synthase RluA"
                     /protein_id="HDL5593087.1"
                     /translation="MALIEYNPPLEPFLDEVYRDNHILVINKPSGLLSVPGNRPEYYD
                     SAMTRVQQKYGFTEPAHRLDMATSGILLFALSKAAEKELKRQFREREPKKHYIALLWG
                     KLGEKVGDKGEMNFPLICDWENRPRQKICYERGKKAITHYEVLAHYPNNIARVKLTPI
                     TGRSHQLRVHSLALGHPIIGDKFYANPLAKSLSPRLCLHAESLTITHPITRELMTFTA
                     EPTF"
     gene            complement(20472..21047)
                     /gene="ampD"
                     /locus_tag="PXE26_000472"
     CDS             complement(20472..21047)
                     /gene="ampD"
                     /locus_tag="PXE26_000472"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HDL5593088.1"
                     /translation="MPNLKIEQGCLTGQKQVPSPHFSQRPDQEDISLLVIHYISLPPE
                     EFGGNFIDLFFQGKLEPTAHPYFEEIKDLRVSAHCLINREGEITQYVNFNDMAWHAGV
                     SCFEGREKCNEYSIGIELEGSNNQPFTQAQYQSLANLTKAIQQSYPQITDERITGHCH
                     IAPERKIDPGQYFDWAYYKHLLNEAKKSAQQ"
     gene            21107..21949
                     /locus_tag="PXE26_000473"
     CDS             21107..21949
                     /locus_tag="PXE26_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001300574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HDL5593089.1"
                     /translation="MLSYRHSFHAGNHADVLKHIVQLLILRALKEKEKGFLYLDTHSG
                     VGRYSLLSFESEKTGEYLEGVARLWERDDLPEEVAFYIDELKKLNRGGKLKYYAGSPL
                     LAVQQLREQDRAILTELHPNDFPLLRQEFAKAKNVQTKRENGFQQLKSALPPKERRGF
                     VLIDPPYELKEDYELVVKAIEEGYKRFATGVYAIWYPVVLRQHTKRIVRGLMDTGIRK
                     ILQIELAVRPDSDQRGMTASGMIVINPPWQLETQMKKILPYLTEVLVPEGTGSWKVEW
                     ITPE"
     gene            22072..22713
                     /gene="pyrE"
                     /locus_tag="PXE26_000474"
     CDS             22072..22713
                     /gene="pyrE"
                     /locus_tag="PXE26_000474"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HDL5593090.1"
                     /translation="MQQYKHDFIEFALSRNVLKFGEFTLKSGRISPYFFNAGLFNTGR
                     DLAKLGEYYAKAIQASGIEYDVLFGPAYKGIPIATTVAVALANLFDVDKPCCFNRKEA
                     KDHGEGGNLIGSPLTGKILLVDDVITAGTAIRESMEIINANNAQLAGVLIALNRKEKG
                     KGELSAIQEVERDYGCQVFSIVDFDDLVAFIETSPQYAPYLPKMREYREKYGV"
     gene            22887..23976
                     /locus_tag="PXE26_000475"
                     /pseudo
     CDS             22887..23976
                     /locus_tag="PXE26_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607068.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
     gene            complement(24041..25231)
                     /gene="metC"
                     /locus_tag="PXE26_000476"
     CDS             complement(24041..25231)
                     /gene="metC"
                     /locus_tag="PXE26_000476"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HDL5593091.1"
                     /translation="MSNYKNLSTKLVHTGRKKRNTQGAVNPVIQRASSLVFETLEEKK
                     HATQNRYKGALFYGRRGTLTHFSLQEAMCELEGGAGCYLYPCGAAAVTNAILAFVEQG
                     NHVLMTGAAYEPTQEFCNALLKRMGVSTTYYDPMIGEGLKALVQPNTKVLFLESPSSL
                     TMEVPDIPTLVRVAREINPEIVIMIDNTWSAGVLFPALEYGIDISIQAGTKYLVGHSD
                     VMIGTAVSNARCWDKLREGSYLMGQMVDADSAYITARGLRTLGIRLKQHEQSSIAVAN
                     WLAQRPEVKAVYHPALESCPGHEFFKRDFLGSSGLFSFELCEKLSNDKLANFLEHFEL
                     FSMAYSWGGFESLILANQPEEIAKIRPAIERKLTGTLIRIHVGLEAVEDLIADLEQGF
                     NRIR"
     gene            complement(25290..25829)
                     /gene="dsbB"
                     /locus_tag="PXE26_000477"
     CDS             complement(25290..25829)
                     /gene="dsbB"
                     /locus_tag="PXE26_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbB"
                     /protein_id="HDL5593092.1"
                     /translation="MLYFFKNLSQSRSAWFLLMLSCLILEGTALYFQHGMGLVPCVMC
                     IYERVALFGILFAGILGFLGNRYAIIRYLAILIWLGSAFKGLVLSIKHHDYQVNPSPW
                     NQCEFKVNFPQTLPLDQWLPQVFAPGPVNCSQSQWEMFGFSMAQWLIFTFAVYLIVAV
                     IVLISQFKRSRQRNNFMFR"
     gene            complement(25892..27433)
                     /gene="nhaB"
                     /locus_tag="PXE26_000478"
     CDS             complement(25892..27433)
                     /gene="nhaB"
                     /locus_tag="PXE26_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proton antiporter NhaB"
                     /protein_id="HDL5593093.1"
                     /translation="MSSIDALFKSFLGKSPEWYKLCILAFLIINPLIYFFINPFVAGW
                     FLVAEFIFTLSMALKCYPLQPGGLLAIEAVVIGMTNPHHIKEEIMANFDVILLLMFMV
                     AGIYFMKQLLLYIFTKLLVAIHSKKILSLSFCLSAAFLSAFLDALTVIAVIISVGTGF
                     YGVYHKVASGNNFEDSTDITNDEKIISNKEILEQFRGFLRSLLMHAGIGSALGGVMTM
                     VGEPQNLIIASQAEWGFIEFLLRALPVSLPVLICGIATCFLVEKYKLFGYGDRLPSKV
                     WVVLARYSQLKEQKMTKQDRLKMLVQAIAGIWLIIGLALHLADVGIIGLTIIIICTAF
                     CGITDEHTLGKAFQESMPFTALLIVFFSVVAVIIDLKLFEPIIAFVLSAEPHSQLSLF
                     YIFNGLLSMISDNVFVGTVYINEAKTALDAGIIDREQFDLIAVAINTGTNLPSVATPN
                     GQAAFLFLLTSSFAPLIKLSYGRMVYMALPYTIVLSIVGFLGLEFLLPSMTEVMINWG
                     WFITR"
BASE COUNT         7948 a         5428 c         6160 g         7949 t
ORIGIN      
        1 tttgatcaaa aaatacgtaa aatcttgttg tgttactgtt tcccatcgct aatatagcat
       61 agcttgttag ataattcttt aaaggagatt actatggcta tgccatctca acgtttttct
      121 cttacttggg tactaaattt atttggtact gcggtaggag ccggcgtttt atttttgcca
      181 attaatgcag gtatgggtgg gttctaccca cttattatta tgactttgtt agttggacca
      241 atgacatatt tagctcaccg tggcttaaca cgttttgtgc tttcttcaaa atacaaaggg
      301 aacgatatta cggctgttgt tcgtgaacat tttggtgaac aggccggtaa attgatcacg
      361 ctactgtact tctttgccat ttttccgatt ttactgattt atggtgtagg tattaccaat
      421 accgtgagtt cttttatgga gaatcagctt catatcgcgc caccatctag ggctgtatta
      481 tcgtttatgc taatagctgc tatgatcgga gtaatgttat taagtgagca agtcatgtta
      541 aaaatcacaa cttgtcttgt gtatccatta gtgttgattt tattgggctt atctatttat
      601 ttaattccac agtggaatac agctgcctta cagcaaatgc caactacagg agacttcctt
      661 actacacttt ggctgactat tcctgtttta gtctttgctt ttaaccattc accggctatt
      721 tcttcttttg cactttctca acagaaatat taccaagatg acaagaaggc tgaaattgaa
      781 tcagctaaag tattacgttc taccgccttt atcttggtgt tatttgtgat gttctttgta
      841 tttagctgtg tattaacttt gacacctgaa gaattagcac aagctaaagt gcaaaatatt
      901 tcgattcttt cttaccttgc gaataaattt gataatccga ttatttccta ttttggaccg
      961 ttggttgctt ttttggcgat tggtagctct ttctttgggc attatttagg tgcgcgcgag
     1021 gggttagaag gattggttaa tcaaatgcgt aaagagccga ttgatccaag caaattccgc
     1081 aaaattaccg ctattacttt tttgatcatt ttatggattg ttgcgactat caatccaagc
     1141 attttaggct tcattgaaag ccttggtggg ccgattattg cgatgatctt gtttattatg
     1201 cctgtctatg ccgtatataa agtaccggca cttgcacgtt ttaaaggtga atttggccat
     1261 ttatttgtgc ttgttatggg ttgtattgct atttcagcaa tagtatatgg gttactgtaa
     1321 tctttctaaa atcaatgtag aatacgccct tttattttct atgtgaattt gtgtttatga
     1381 ttagtgtatt tgatatgttt aaagtaggga ttgggccttc cagttcccat actgcggggc
     1441 cgatgaaagc ggcaaaggaa tttgtcgatg aattacaaaa tcgcaaattt ttaaacaaaa
     1501 ttgaccgctt gcgggtagat gtctatggtt cattatcact caccgggcga ggacataata
     1561 cggatattgc catcataatg ggattaatgg ggtatttgcc tcataatgtg gatattgaac
     1621 gtattgagca gacgattgaa aatctaaaac aaaataagca acttatcatt gctgaaagca
     1681 gtgttgagcc taaagtgatt gcgttcgatt tttatgagga tatgccattt catcgagatt
     1741 tcttacctcg gcacgaaaat ggtgtgaaat ttagtgcctt gagcggtgaa gagttgctat
     1801 ttcaaaacac ctattattct attggtggtg gctttattgt tgatgaagct aactttgagc
     1861 aagttaaaaa ttcagatctt tctgttccat tcccatatca gaatgcagca gatttacttg
     1921 cacattgtaa gaataacggg ttaccgcttt cttctttagt ctggaaaaat gagcttgctt
     1981 tacgcagtag agtagaaatt tcggattatt tggcaatgat ttggaataca atggaagcct
     2041 gtattgagcg tggtttgaat acggaagggt tactacccgg gcctctgaaa gtggtacgcc
     2101 gtgccagtgg gctacgcaga atgttagagg caaacagtaa attcaatacc gacccaatgc
     2161 aaattatcga ttgggtgaat atgtttgccc ttgccgtgaa tgaagaaaat gcggcaggtg
     2221 ggcgagtagt caccgcacct accaatggag cctgtggtat tgttccggct gtgttggcgt
     2281 actaccaaaa atttattgca cagcttaatc aagatactat tgagcgttat ttattgacta
     2341 ccagtgtgat tggttcgtta tacaaaatga atgcctctat ttccggtgct gaagtaggtt
     2401 gccaagggga agttggtgtt gcttgttcaa tggcggcagc aggtttaacg gaaattatgg
     2461 gtggcagtgc tgaacaggtg tgtatggctg cagaaattgc aatggagcac aatttaggcc
     2521 taacttgtga ccctgttggc ggacaagtgc aagtgccttg tattgaaaga aatgcaatcg
     2581 cttcagtcaa agcgattaat gccagcagaa tggcactacg ccgtacttct tcgcctcagg
     2641 taagtttaga taaagtcatt gaaacaatgt acgaaaccgg caaagatatg aatgcaaaat
     2701 accgtgaaac ctcaaccggt ggcttagcaa tcaaaatttt accttgtgat taattaatga
     2761 aaaaggctac cttatcaaaa taaggtagcc ttttagtttg tagaacatta atgacggaaa
     2821 tgcctcattc cggttagtac cactgccata ccgtgttcgt tggcggcatc aatcacttct
     2881 tgatcacgca ttgaaccacc tgggtgaatc acacaagtaa tccctacttt tgcagcagcg
     2941 tcaataccat cacggaacgg gaagaacgca tcggaagcca ttacacaacc cacaacttgt
     3001 aagccctcgt cttccgcttt aatacctgca atttttgcgg aataaacacg gctcatctgc
     3061 cctgcaccga taccgatagt ttgcccgtct ttggcataca caatcgcatt cgatttcaca
     3121 tatttcgcca ctttccagca gaacaatagg tcttttagct cagcttcagt tggtttacgc
     3181 tctgaaacca cctttaaatc gtcaatagat acagagcctt ggtcggcatc ttgcactaat
     3241 aatccgccgt ttacccgttt gaaatctaag cgttttacag cttctgagaa ctcgccacat
     3301 tcaagcacac gcacgttttt cttagtggct aacacttctt tggcagaagc agaaacggtt
     3361 ggtgcaataa tcacttcaac aaattgacgg tctgcgatgg tttgagcagt ttcgccgtct
     3421 aattcacggt taaaggcaat aatgccaccg aaagcagaag ttggatcggt ttggtaagca
     3481 cggttgtagg catctaaaat atttttaccc aaagcaacac cacaagggtt agcgtgtttt
     3541 acaatcacac aagcaggctc gctaaattct ttcacgcatt caagagccgc atcggtatct
     3601 gcaatattat tatacgaaag ggctttacct tgtaactgtt tggcggtgga aacagaggct
     3661 tcttttaact cattttcgac atagaatgca gcgttttgat gcgaattttc gccataacgc
     3721 atcgtttgtt tacgcacaaa attgaggttt aaggtgcgag ggaattgtcc acttggttgg
     3781 gttaaatctt cttcctcagc cccttgataa ggcggcactt tttgcccgaa atagttggca
     3841 atcattgaat cgtattgtgc ggtatgctca aacgctttaa tagcaagatt aaaacgggtt
     3901 tctaaagtta aactgttttg atgttgatcc atttcggcaa gaatagcatc aaaatcattg
     3961 ttattgacca caatcgccac atctttatga tttttcgctg cagaacgcac cattgtcgga
     4021 ccaccgatat caatattttc caccgcatct tcaaggctac aatttggatt ggcaacggtt
     4081 tgagcaaaag ggtagaggtt tactaccacc atatcaattc gttcaatgcc gtgttggttc
     4141 atcacttcat catcagtacc acggcgacct agaattccgc cgtgcacttt cgggtgcagg
     4201 gtttttacac gcccgtccat catttcagga aagccggtgt aatctgatac ttctgttact
     4261 agcaaaccgg cttcagccag taattttgcg gttccgcccg tagaaagtaa ttttacccca
     4321 cgagccgata gcccacgagc aaattcgaca atgccttttt tatcagacac acttaataac
     4381 gcctgttgaa tcgccattct taaattcctt aaaatgagtg ttaacgtgaa aataaacggc
     4441 aaagattata acgcaaacgt ttgctttttt catctacaag tggtcgattt tgcaaatttt
     4501 tctgcaaaat cgaccgcttg cactcgtgat taaagcgggt agaatagagg aaaaaaatcg
     4561 gaggaactat gattaaccac aatttagcag atttcgtatt tgagtatttt accgaaaaca
     4621 acctaaaagc aggcacacta cgttatcgct acataaaaga gaacgtgatt gatgcttaca
     4681 gtacccgagt agatgatgcc tttcaaggta aaggtattgc aggagagctt tacaatgctt
     4741 taattgcgtt tgcgcaagaa aaagggctga aaatcaagcc aagttgtagt tatattgagg
     4801 taaaaatgca acgaagtcat cgagatttaa ttgcttagag aggagcaagc ggtcgtaaaa
     4861 tttcaaaaat ttacgaccgc tgtcttattc aattctcaaa aatccatcac acaaaatata
     4921 agccctattc attaaacaac gccatataaa acttattttc aaatgtatta agcggagccc
     4981 gtttggtttt gctttcgagc tcgccggtgg aatagccgtt aataaattgc acaaaagcga
     5041 tgcgttcgcc acgggcgttt ttcataaagc cggcaaggtt gtaaacccct ttcagtgagc
     5101 cggttttggc aatcagattt ttggcaagcg gttctgttga aatagagcct ctgccggaaa
     5161 tagtaccgtc cacgcctgca atcgggaagg tttcaaacag ttttaagctt tcttcgtttt
     5221 gagcgatata ttcaagggtc tccagcattg ttcggctgct gacttgatta tgacgggaaa
     5281 gccctgagcc atcagccacc acgctgtttt taaaatcaat attggctttg gtttttaata
     5341 actggcgaat cacataacta cctaattgga acgatgcggg gcggttgtgt tgcttgttgg
     5401 caacggttct aaacagggca tcggcaattt ggttatccga ttttttcatc atttttttca
     5461 ataataccgg caacggctcg gaataatgct cggcaagtag cgtgccgttt tgggcagtaa
     5521 gtggctcttt tacttgcccg ttaaaggcaa ttttcaggct ttttaactgg gctttaagca
     5581 tatttgcccc gtaattagtt gggtcttgca ccgaaaaact taagccgaac ggttgagact
     5641 ggcgagccat acagcctttg atttggtagc ggttgttatc gtgaaccacc acatcaagct
     5701 ggcaaaacgg agcttctttc ggctcgacaa tataagcaga gctaaacacc tgcaccggat
     5761 aagcggacgg cacattcact ttagcaaatt cgccaatggg ttggtcggca tttaaggtga
     5821 cataaaaaca gttgtgatcc acattaattg ccgccggtgg ggcgttaaag cacatcgtca
     5881 agtcgttcca aatccaaccg gaggctttgt cgtggctggc gaaaaccgac gggtctagaa
     5941 ttaaatcccc ctcaatttta ttgatacctt gttgctttaa tttgctcatt aattgataaa
     6001 tttgaccgct tgtaagctca gggtcgccac taaaacgggc aattaaattg ccttttaaca
     6061 ctccgttttc tacttttccg ttggttaaaa gggcagtttg aaagcggaaa tcatcgttta
     6121 aagttaattt tgctgccagt gccgtaaaga ctttttgggt actggcaggt agcataaaaa
     6181 tatcactttg gtattgggtg atgatttggt tagtgtctaa atttttagca ataaaactaa
     6241 cagaagtacc ggcaggcaag gtatttaata attcttcggt attaatttca gcctgtgtaa
     6301 tgcttggaat cagaagtgta gataagataa atttatttaa aaaagcacga gtgaaatttt
     6361 taaaaatcat aataaaaggg gagttgaaat ttttagtgag aaattgaata atagcccttt
     6421 cgttttaatt cgtaaaccga taatttttag taaggaaata gatttaatga aacaaattcc
     6481 tatgacggtg cgtggtgcag agcaactgcg tgaagaattg gattttttaa aaaatgtgcg
     6541 tcgcccacaa attattgatg cgattgcaga agcccgtgaa cacggtgatt taaaagagaa
     6601 cgcggagtat cacgcagccc gtgaacaaca aggtttctgt gaggggcgta ttcaagaaat
     6661 tgaaggcaaa ttaggcaatg ctcaaattat tgacgtcact aaaatggcaa acaacggcaa
     6721 agtgattttt ggggcaacgg tgcagttagt gaatgctgat acagatgaag aagtcactta
     6781 ccgcattgtg ggtgatgatg aagccaatat taaagagggc ttaatttcag ttaattcccc
     6841 gattgctcgt ggtttaatcg gcaaagaggt ggacgattca gtcagcatta ccacaccggg
     6901 tggcaaagtt gagtttgaca ttgttggcgt agaatatatt taatctacgc tagggcgaat
     6961 tacaatagtg gggcgaaaaa attttcgccc ctactttatt aaacaatctc actcggtaca
     7021 aagaagtagg caatttcacg ttttgccgac tcttcggaat ctgaaccgtg taccgaattt
     7081 tcacgcatac ttaaggcata taaatcgcga atggtgcctt tttcacggtt atccggattg
     7141 gttgccccca ttaatgcacg ataatggcta attgcatttt ccccttccag tacagaaacg
     7201 acaatagatc ctgatgtcat aaattccact aacggctcaa agaaatcttt gcctttgtgt
     7261 tccgcataaa atccttccgc ttgctcacgg gtaagatgta ctttttttag agctttgata
     7321 gtcagcccgt tttcttccaa ttgagccaaa attttgccga ttaaattacg gcgtgtagca
     7381 tccggcttaa taatagaaag cgtttgttga atcatcatct tctcctattt aacttgcatt
     7441 cccggctgaa caccgctgtc tgcatctaat aagaacaggt tcgcaccgcc tgtgccggca
     7501 gataaaatca ttccctccga cataccgaac gacattttgc gtggagcaag gttggcaatt
     7561 acaatcacaa aacgcccgat aagtgcttcc ggatttgggt aggccgcctt aatgcctgag
     7621 aatacttggc gttggtggtc gcctaaatcc agctcaaaac gtaacatttt gtctgatttt
     7681 ggcacagcct cgcagttcaa tactttggct gcacgtaaat ctaatttcgc gaaatcatca
     7741 atcgtaattt cagggctgat tggctcaact gcaatatttt cttgtttttc gaccgcttgt
     7801 tgttccactt tttgtgttcc tttggtttgg ttttcggttt tcttattcgc ttcggcaaat
     7861 aaggctttgg tttcatcaat cactgcatca atctgttttt tctcaaggcg tgagaatagc
     7921 gatttaaacg gtgccacggt atgcccgaat aatggggtag cgatattatc ccaacgcaat
     7981 tcgctttgta agaatgcttc ggcacgttct gccagttttg gtaacaccgg ttttaggtag
     8041 ctcatcagca cacggaataa ctcaatgccc attgaacaaa ccgcttgtaa ttcagcctct
     8101 ttgccttctt ctttggcgat gacccaaggg gctttgtcgt caatgtattt attggcttta
     8161 tcggttaatt ccataatggc acgaatagct ttattaaatt cacggttttc atagaaattc
     8221 gctatggttt ctgcttgagc ggtaaattca ttaaataacg cttcgtcatc taatttttca
     8281 gctaatttgc cctcaaagcg tttagcgata aaactggcgt tgcgagaagc aagattcact
     8341 aatttgttta cgatatcgct gtttacacgt tgcacgaagt cgtctaaatt aaaatctaaa
     8401 tcttcaatgc gatcgtttaa ttttgccgca tagtaatagc gtaagcattc cggatcgaga
     8461 tgttttaaat aggtgttggc ttgaatgaat gtaccacgag atttcgacat tttcgccccg
     8521 tccactgtca cataaccgtg agcaaacaca ttggtcggtt tgcggtagcc gctgccttcc
     8581 aacattgccg gccaaaacag gctgtggaag taaacaatgt ctttaccgat gaagtgataa
     8641 agctcggtgg tggaatcttt ttgccaaaac tcatcaaaat caatgcctgc acggtcgcat
     8701 aaatttttaa acgatgctat ataaccaata ggggcatcta accaaacgta gaagaatttg
     8761 ttttctgcgt ccggaatttc aaaaccgaaa taaggggcat cacggctgat gtcccattgc
     8821 tgtaaaccac tttcaaacca ttcttgcatt ttattggcaa tttcaggttg gagtgagccg
     8881 gaacgagtcc actctttcaa cattccctca aagcttggca ggtcaaaaaa gaaatgttct
     8941 gattctttta ccaccggagt tgcaccggaa actgccgagc gagggttgat taaatccatc
     9001 gggctatagg tagaggcaca tacttcacag ttatcgccat attgatcttc ggctttacat
     9061 ttcgggcagg tccctttcac aaagcgatcc ggcaagaaca tatttttttc tgggtcgaac
     9121 agttgtgaaa tcactttgct tttaataaaa ccgttcgctt ttaaggtttt ataaatatcg
     9181 gtagtgattt ggcggttctc ttcgctgtgg gtggaatggt aattatcaaa gctgatatta
     9241 aaactggcaa aatccgcttc gtgatcggct ttggcttttt cgattaactg ctcaggggta
     9301 atgcctaatt tatcggcatt aagcataata ggcgtgccgt gggcatcatc agcacagaca
     9361 aagtggactt cattgccacg catacgttga aaacgcaccc aaatatctgc ttgaatatgt
     9421 tcaagcatat gacctaaatg aattgcaccg ttagcatagg gcaaggcaca agtaacaagc
     9481 atttttcgtt tttggttagc cattcttttt ctcattaaaa ttagggtaaa aattgccgtc
     9541 tattttagcc caaaagtggc aggtttacca gttggcgtga atttattaga gctttgggct
     9601 aacaagcggt agaatatgat gcgctagagg cgaaacattt ttcgcctcaa tttcccaaat
     9661 gatgatgtgg gcgaaagatg tttcgcctct aaacctattt tggataaaaa tagtatgcga
     9721 caagtaaagt tataccgcta ccaactcccc attcaaaccg gtgtagtgtt acgcaagcaa
     9781 cctttgaaag aaaggcaagg ggtgttggtg tgtttgcaag aacaggagaa agtcggctgg
     9841 ggcgaaattg caccgcttcc aagttttagc caagagagcc tagaacaagc tgaaaaccaa
     9901 gctgtgaatt ggttaaaggc gtggcagaaa ggagagcctg aaacgttaga gcagcttttc
     9961 ccgtctgttg cctttgggct aagctgtgcg ttggctgaac tgaataatga attaggcgag
    10021 caagcgaata accaatcggc ggtgctgtgc tatggcgatt tggaaaagtt acacacggca
    10081 tttagccaac atacgaaccc aatcggtaaa attaaaatcg gtctcaatcc tgaacaggaa
    10141 ggcgagcagg caaatttgct gttgcatact tttccgaatt tacgcctaag gcttgatgcc
    10201 aaccgtcttt ggagcttgga acaagcggtc aaatttgctg aaaaaattgc aaatgaacat
    10261 aaaccccgta ttcaatttat cgaagaacct tgccaagcgc tcgaactttc ccgccaattt
    10321 gccacacaaa ccgacattgc gattgcgtgg gacgaaaccg tgagagaggc gaattttttg
    10381 gtaaaaaaag agccaaattt gaccgctatt atcattaaac ctacgctggt tggttcgctt
    10441 gaaaaatgcg tgaatttaat tcaacaagca cagaagcaag gattagtagc ggtgattagt
    10501 tcaagtcttg agagcagttt gggcttaacc caactggctc gtatcgccca acaatacacc
    10561 ccaaacagtg tgccggggtt ggatacgtta aatttaatgc aacaccaatt attgcgagat
    10621 tggcacgact ctagcttgcc gttggtcggg ctagaaagcg aatttgttag ggaagttgtg
    10681 gtataatctc ccaattaaac actctctccc cttgtgggag agagaccgct tatgagcgtt
    10741 cagcgaaata agcagagaga ggggaagcgg tcatttttct aaaaaagttt gcacatttcc
    10801 cctctccctg atttttcttc tggacgaaga cgtatttccc ccctctccct gatttttctt
    10861 ctagacgaag aaaaatctgt ccctctccca cgaggggaga gggtaaagta atttatggta
    10921 taaaaatagt atgcgtttag acaaatttat cgccgaaaat accggtttga cccgttcaca
    10981 agcggctaaa gtgctgaaaa gtggtgtggt gacggtaaac ggcaatattg aaaaaagtgg
    11041 tgcggcaaaa atcagtcaag aagatgaaat ttattacgaa gatcagaaat tagagtgggt
    11101 ggaagagggg cagtatttta tgctctataa gccacagggc tatatttgtt cacacgatga
    11161 tggtgagtac ccaacggtgt ttcaattctt tgattatccg ttaatgacta aattgcatac
    11221 cgcagggcgg ttagatgtgg ataccacagg gctggtgctg ttaaccgatg acggcaaatg
    11281 gtcgcaccgt attacctcgc ccaagcacca ttgtgaaaag acatacttag tgacgcttgc
    11341 tgatccggtg gaagattttt atgcacagcg attggcagaa ggaattttat tgcgtggcga
    11401 gaaagagcca accttgccgg ctcaacttga aattttagac gattacaatg tgaatttaac
    11461 tattagtgag gggcgttatc atcaagttaa gcgaatgttt gccgcccttg ggaataaagt
    11521 cgaggcattg caccgctggc gaattggcga tgtggtgtta gatgaaaggt tggaagaagg
    11581 tgaattccgc tcgctcactt cagaggagat agccagtttt aatggaaagt agaagaccaa
    11641 gcctgagctt tttcatcata ttaggtatga tggcaatgtt gccaccatta gccattgata
    11701 tgtatttgcc ctcattttta gacattgccc gtgacttggc ggtttcgcaa gaaaaagtgc
    11761 aaaccacctt ggcggtattt accctaggtt ttggggcagg gcaactattc tggggaccga
    11821 tggcagacag ctttgggcgg aaaatcatta ttttaatcgg attagtcggc tcggcgattg
    11881 ccgcttattt tctgacccaa gttcagaata ttgaaacatt ttacctgcta aggttagtac
    11941 agggcttatg tgcggcagcc ccggcggtgg tgctgggagc attagtgaga gatctgtttg
    12001 agcgtaattt atttgccaaa ttgatgtcgg ttattatgat tatttctatg cttgccccat
    12061 tgcttgcacc gattgttggc ggttatattg ccaaatattt ccactggcac tcaattttct
    12121 atgtgttagt ggcgatgggg attttgtgcg tggtattaat tagttggaaa atccctgaaa
    12181 cattagcccc cgaaaaacgc ctgccgttaa gttttggcaa aactttaagc aattttgcca
    12241 tcttactgaa acataggcct actcttggtt atgtgctgat tggcggctta acctttgcag
    12301 gtattttctg ttttttaacc tcaggctcga ttgtctatat tgggctttat ggcgtgtcgc
    12361 aagaaaattt cggctatttc ttcgggctga atatgattgt gatggtgacg atgacggcga
    12421 ttaacagcaa aatggtagtg aaagtcggct ctgaaacgat gttacgaatt gctttagcta
    12481 tgcaactgtt agccggcatt tggctggctt tagtggcgat ttttgattta ggcttctggg
    12541 caatggcaat cggtattccg ctttatatcg gaatgctttc caccattggt agtaatgcca
    12601 gtgccgccat tttagagcaa tttccacaaa tggcaggcac ggctaacgga gtagcaggta
    12661 cggctcgttt tggtgttgct tcccttgttg gagcagggct ttcacatatt gctgtaacca
    12721 gtgctgcccc aatgcttttg gcgatggcat tgtgcgttat gttagccggt gtggtgtatt
    12781 attttctgtg ttataagcga taactaggtt ggggttagct tgcgaaaacc caacaaattt
    12841 ctacaagcgg ttaataatag tacatttttt gcaaattttt aggcagaatt aaccgcttgt
    12901 gtggtacgag cgtggacgct cgcaccatcg gggcaatatc tactaagatt ttaaaaacag
    12961 cgaaatagat tccaaatgcc cggtgtgggg gaacatatca atcattgccg ctttttctag
    13021 cctgtagcct agttgcaaca gtttttcggc atctcgcacc agtgttgccg gattgcaaga
    13081 gacataaaca atccgctcag gattgagtga tgtcaagtga tctaggcaaa atagtgctcc
    13141 gttgcgtgcc gggtcgagta gtaccttgtt aaacggctct tttgcccaag gtttgtcaga
    13201 aaacggctca tctaaattgg tttggtaaaa ttccacattt tttagaccgc ttgtcaccgc
    13261 attctctcgg gcttgttgca ccattggttc taccccttcc acaccgacca ccgatttcgc
    13321 tcgctcagca ataggcaagg taaaattccc cattccacag aagagatcta acactcgatc
    13381 ttggttggat aattccagcc actcaagggc tttttccacc attttttcat tgagcgtggc
    13441 attcacctga ataaaatccc gaattgaaaa atgcaacttt agaccctgaa tttgataata
    13501 cgggcgttca ccgcacagat gctcaatgtg attttcgcta gtcatcacaa aaagagataa
    13561 ttgctcttgt gtggcgaatt gacgcaaatt gtggttatct tgcgccgata atgcccctaa
    13621 atggcggaaa aatagggcaa tggtattgtc cgcactgacc agctcaatat gccccaattt
    13681 tttcggctgt tgccagtttt caatcaggtg ttttaatttt gggagcaaat tggcaagcgg
    13741 ttcaaccagc acttcacagt gtgcaagcgg tataatttgg ttggaatttt gcaaacgaaa
    13801 gccgattacc gccttgcctt gctggatcgc aatgcttaat tttgcccgac ggcggtagtg
    13861 tttatcgttg ccgataatca tcggctgaac atcaatagcg tgggtttgca atttctgtaa
    13921 gcgttggaat aaagcctgtt gttttgcctt acgttgcagt tcaagcgaaa tatgctgcat
    13981 ttggcagcca ccgcattgcc cgtaaagttc gcagcttggc attcgccgat ttgcagattt
    14041 tttaagaatt ttaaccgctt gtccacgtcc gtattggcgt ttctcttcca acactttaaa
    14101 ttccacctgc tcatcaggca gggcattttc gataaaccaa gttttgccgt tgattttggc
    14161 aatccctaag ccttgataat ctaacgattg aatagttgcc ttttgacaag cgggtgattt
    14221 tatcggtttt tttgccgatt tttcagaata aaaaatagcc attgttttca gatgaattgt
    14281 tatgatataa agtgtcgaaa tggggagatt atataagaaa agcagttggc ggaaaatgga
    14341 ggcaatatga tttcatcggt ttggaatgaa cgttatttgg cggataaaaa acgggaacaa
    14401 gatcaccgct cgccttttca gcgggatcgg gcaaggttat tgcattcgga ggcttttcgc
    14461 tgtttgcagg cgaaaacgca aattcacgcc gtgggggaag atgattttta tcgaacccgt
    14521 ttaacccatt cgttggaagt ggctcaaatc ggtagcagtt tgcgagaaaa attattagcg
    14581 gatgtggaag gctttcaagc ggtctgttcg gagcaggaat ttgcaaaaaa tatggcaaat
    14641 ctgaccgctt tattgccgga tcatagcttg gtggaatccc tttgttttgc ccacgatctc
    14701 gggcaccctc cgttcgggca cggtggtgaa atggcgttaa attataaaat gtacgccttt
    14761 ggcggcttcg agggtaatgc tcaatccttt cggattatga cccagcttga gccttacacc
    14821 gaaacagccg gaatgaatct gacccgtcgc accttactgg gggtaatgaa atatccggca
    14881 ctcttgtctc aaacctcgcc gattgagccg gcagaaatga gcgaggctcg gcatattaat
    14941 ttgcaccatt ttccacagag caaagggatt tttgatgaca acaaccactt ttttgagtgg
    15001 gtattagccc cgttaagtga aaaagaccga cgccaatttt gcacggttca gcccaatcaa
    15061 gatccgaaac agccaaacaa aacgcaatat aaatctctcg attgcagcat aatggaacta
    15121 gcggacgata ttgcctatgg cgtacacgat ttggaagatg cgattgtagg tggaatggtc
    15181 acaccgcaat cgtggcaaaa tgcggaaaaa ttgctggcgg agtgccaatc cgattgggtg
    15241 aaacaacgcc tgccggagat tcgggaaaag ctcttttctc agcaccgcta cgagcgaaaa
    15301 gatgtgatcg gggcattagt gaatcatttt attaccaatg tgcgttggaa agctctgcct
    15361 gaatttgacg agccgttgct acgttataat gcctatttac cggaaagtgt tgcctgtgtg
    15421 ctgaaaatct tgaaagattt tgtgtatcaa tatgtgattt gtgatgccaa aacccagcgg
    15481 gtggaacgca aggggcaacg cattctaatg gaattgttcg atattttaag cagtgatccg
    15541 atgcgattac tccctaataa tgtgcgggaa cgttggaaaa atgcggaaga atctaagcgt
    15601 gcaagggtaa tttgcgacta tttagccggt atgtctgatg ggcaggcgtt taaacttttt
    15661 gaaagtttat aatgaacttt gttaattttg caaggtctca gtaataggtt tcatttattt
    15721 aataggagat ttcaatgaaa actgtttcta aaggtctttt agtattagca actttggctt
    15781 ctgcaacagc atttgcggtt tcttccaagt gaaatttatc agcctcgtgg cgaattagtt
    15841 aaagcagatc gtcaaggtaa tggtgagttt gaagtagaat atcgtgtcag tggtaatgat
    15901 gttcgtggct tagcgaaaag tgcgatcgcc cacgctaaac gtaaaggttt ccatttagta
    15961 gaatctgata ttcatagaga tgatgctgat ttaaaattca aacgtggtga ccaagagctg
    16021 gatattgaaa ttgaagtaaa aggtagaaat cggattgaat ataaggcaga tctagattta
    16081 gataaaaact aaatttaccc cttaaaacga ccgcttgtgt gatttaaccg cacaagcggt
    16141 ctttttattg tgcttttttg caaaaatact caagccgacc ggtcccggaa tttggtaaaa
    16201 tagccgttta aatgacaata atgatgcttt tacttattac ttagaggaaa aaatgttttt
    16261 agtcggtcag cgttggctaa gtgaatcgga aaataattta ggtttgggaa tcgtgacttc
    16321 ggtggatcat cgcactgtca ctatcaattt cccggcagcg gaagaagagc gggtctatgc
    16381 aattgcagtt gcacctttaa ctcgagtgca gtttcaagcc ggagatagaa ttaacagtat
    16441 agatggctgg cagttagagg tttcagaggt tgtggaaaat caaggtgccg taatctattt
    16501 gggcaaaagg gtggataacg gtgaagaagc ggtactgcct gaaatgttgc tcgatcataa
    16561 aatcagtttc agcaaaccgc aagaccgcct tttttcggct cagattgatc gctcagatcg
    16621 ctttgcatta cgctttaacg ctttgcagca ccagcaagcg caatatcagt cgccactgcg
    16681 tggtttgcga ggcattcgag ccagcctgat tccacatcaa ttacatattg caaaagaagt
    16741 cgggcaacgc cttgctcctc gtgtgctatt agccgatgaa gtgggactgg gtaaaactat
    16801 tgaagctggt atgattttgc aacaacagct attttcgggc agagcagaac gagtattggt
    16861 attagtgccg gaaagtttgc aacaccaatg gttggtggaa atgcttcgcc gttttaatct
    16921 gaaattctcg ttattcgatg aagaacgttg tagtgatttt gataaacaag atgaaaatgg
    16981 cgatgatgta agtgaaaatc catttgagag cgaagcgtta gtcattactt cactaaactg
    17041 gctggaaacc tcaccgcaac gagccaatca agtgcttgct gccgactggg atctattaat
    17101 tgttgatgaa gctcaccatt tagaatggtc ggaaaccgaa tcttctatcg gctatcagtt
    17161 ggtagagcgt ttatctcaac aaattcctgc cgtcttgctt ttaacggcaa caccggagca
    17221 attagggcaa gagagccatt ttgcccgctt ggcattgtta gattcggatc gtttttatga
    17281 ttatgccgag tttgtacagg agcaagcaca gtataaaccg gtggcagatg cggtgagtag
    17341 cttattaagc gataaaccgc taagtaatga cgagcagaat gcgattgcgg agctgttaag
    17401 cgagcaagat accgagccga tgttccgtgc aattaatagc aaaaaatcgg acgaaaatga
    17461 ccgcttgcaa gcccgtcaag agctgattag tgagctaatt gaccgccatg gaaccagccg
    17521 ggtgttgttt agaaataccc gtcagggagt gaaaggcttc ccacatcggg aataccacca
    17581 aatcagccta gaaatgccga aacaatacca aaatgcgtta aaagtgatgg gaatgatggg
    17641 gagtgtgagc caaagtgatt tgctctatcc tgaatatttg ttccaacgaa tgaacccgaa
    17701 tgcgaaatgg gctgaattcg accctcggat tgattggctc atcactttct taaaaaatca
    17761 tcgtgatgaa aaagtgctgg tgatctgcaa acaggcggac actgcgattg ctttggagca
    17821 agttttgcgt gagcgtgagg cgattcgttc tgccgttttc cacgagaaaa tgtcgattgt
    17881 tgaacgtgac aaagctgccg cctattttgc tcaacaagaa gaaggcgctc aggtgctgat
    17941 tagttcaagc atcggttcag aagggcgaaa tttccaattt gctaaagatt tagtgctgtt
    18001 taatttgccg gataacccgg atttattgga gcaaagtatt gggcgattag atcgtatcgg
    18061 acagaaaaat gacattcaga tttatgtgcc ttgctttaat ttatcggctc aacagatgtt
    18121 ggcagagtgg tatcacaagg gcttgaatgc gtttgaagaa acctgcccga tgggaacagc
    18181 gatcttccgt gaattaggtg aagaattgca acaattcctg caaaaacctg aactttcagc
    18241 ccaatttgat gattttgttg cgaaaaccta taaacgccaa cagtatttga aagccgaact
    18301 ggagaaagga caggacagat tattagaact gaattctaat ggcggagaag cagctcaaca
    18361 gctcgctaat gatattgcga aagaagataa taatccgcag ttggttaatt ttgccttgag
    18421 tttgtttgat gtgattggcg ttgaacagga agatttaggc gagcagagca ttgtgattag
    18481 cccaaccgga catatgcttg tgcctgattt cccggggcta tcggaagatg gcacgaccat
    18541 tacctttaat cgtgaactgg cgttaatgcg ggaagaggtg gaatttctca cttgggatca
    18601 cccgatgatc cgcaatggta ttgatttaat cacctccggc gatattggca aatcagcaat
    18661 ctcattgctg gtgaataata aattgcctgc cggtacatta ttacttgagg cgctttatgt
    18721 ggtggaagca caagcaccga aagggctaaa tttaacccgt ttcctaccgc caaccccgat
    18781 tcgggtttta gtggataaca aaggcaacaa tattgctccg caggtctctt ttgccgggct
    18841 tgaacgccaa ttaaaaccgg tgaataaaca gatggcaaat aaaattgcca aaatggctcg
    18901 agcggatatt gaaaaattaa ttaaagcgag tgaaaaagcg gtagaacctc aggtccaaca
    18961 ggtgattgaa actgccaaat ttgaggcaaa tagcaaatta aaagcagaat tacaccgctt
    19021 ggaatcactc aaaatggtga ataaaaatat tcgagccgat gaagttgaag ccttagaaca
    19081 acagcttaac gcttcccttg cccaacttga aacggcaaat tatcgcttag atagcttgcg
    19141 agtgattgta agtaataaag cgtaattttt tgcaagtacg aaaagtgatt ttttcgatct
    19201 gtgtcgaaaa aatcactttt ctattttgtg tcatccttgc agattattta tgctattcct
    19261 catattgtaa aaggtataaa aaaggaatat tatgtatata gatttgcaat atgctgtgcc
    19321 gttattgttt gaatacgacc cgaacaaaag ccaaattaat ttagccaaat atggtattga
    19381 ttttgaacag gcaaagttgc tttgggaaga tgaacgaaaa gttgtactgg aggcttgcat
    19441 tgaacccgaa ttacgctatt tcctgattgg caagatttat gataaatatt ggacagcgtt
    19501 ttttacacca agaaatgatg ttattcgttt aatttcagtt agacgttccc gtaaaaaaga
    19561 gatctcatac tatgagaaat accattagtg ccgaagaatt agaacgtatc ttcgatgaag
    19621 gcaaagaaga tattttacaa tactgcgatc tttctaccgc tcatcgcccg gggcaaatga
    19681 aaagggtgaa tgttgatttc ccaaattgga tggtagaagc gttagataag caagccagac
    19741 atttaggtgt gcctcgccaa gccttgatta aaatgtggat tgcggaaaaa ttaccggttc
    19801 aatcacctag gtaagcgagt ggcaaatggc attaattgaa tataaccctc cattagaacc
    19861 atttttagat gaggtttatc gggataacca tattttagta attaataagc ctagtggttt
    19921 attatcggtg ccgggcaatc gtcccgaata ttacgacagt gcaatgactc gagtacagca
    19981 aaaatatggc tttaccgaac cggctcatcg tttggatatg gcaacaagcg gtattctttt
    20041 gttcgcccta agcaaagcgg cggaaaaaga actaaaacgc caatttcggg aacgtgaacc
    20101 gaaaaaacac tatattgcgt tactttgggg caaattaggt gaaaaagttg gggataaggg
    20161 cgaaatgaat tttccgctga tttgcgattg ggaaaatcgc ccccgccaga aaatttgcta
    20221 tgaacgaggc aaaaaagcca ttacccatta tgaagtgtta gctcattatc cgaataatat
    20281 agcgagagta aaactcacgc ctatcacggg gcgttcgcat cagctacgag tacatagcct
    20341 tgcgttaggt cacccgatta ttggcgataa gttttatgct aatccgctgg caaaaagttt
    20401 atcgccccgt ttatgtttgc acgcggagtc actaacaatt actcacccga ttacaaggga
    20461 gttgatgacg tttactgctg agccgacttt ttagcctcgt tcagtaggtg tttgtaatat
    20521 gcccaatcaa aatattgccc cgggtcgatt ttccgttccg gggcaatatg gcaatgcccg
    20581 gtgatgcgtt catcggtaat ttgtggatag ctttgctgaa tggctttggt caaatttgcc
    20641 aaagattggt attgagcttg agtaaacggc tgattattac tgccttccag ttcaatgcca
    20701 atcgaatatt cattgcattt ctcccgccct tcaaaacaag agacgccggc gtgccacgcc
    20761 atatcgttaa aattcacata ttgcgtgatt tccccctccc tattaatcaa acaatgggcg
    20821 gaaacccgta gatctttgat ttcttcaaaa taagggtgag cggttggttc gagtttacct
    20881 tggaaaaaca gatcgataaa atttccacca aattcttccg gcggtaagct gatgtagtga
    20941 ataaccaaca aggaaatatc ctcttgatca ggacgttggc taaaatgcgg agacggcact
    21001 tgtttttgac cggttaaaca gccctgttcg atttttaaat ttggcatagt ctaaataggg
    21061 tgaatacgtt aaaatatggc tcattttact agaaaaagag aagaatatgt taagttatcg
    21121 ccacagtttc cacgcaggca accacgctga tgtgctaaaa cacattgtcc agcttttgat
    21181 cttgcgagca ttaaaagaaa aagaaaaagg ttttttatat cttgatactc actccggtgt
    21241 ggggcgttat agtctgttaa gttttgaatc ggaaaaaaca ggcgaatatt tagagggcgt
    21301 tgcccgttta tgggagcgtg atgatttacc ggaagaagtg gcattctata ttgatgagct
    21361 gaaaaaatta aaccgtggcg gcaagttaaa gtattacgca ggctccccat tattggcggt
    21421 acagcaactg cgtgagcaag accgagccat tcttaccgaa cttcacccca atgattttcc
    21481 gctgttacga caagaatttg ccaaagcgaa aaatgtgcaa accaagcgag aaaatggctt
    21541 tcaacaatta aaatccgccc tgccgcctaa agagcgtcga ggttttgtgt tgattgatcc
    21601 accttatgaa ttaaaagaag attatgaatt ggtggttaaa gcgatagaag agggctacaa
    21661 acggtttgcc actggtgtgt atgccatttg gtatccggtg gtgcttcgcc aacataccaa
    21721 acgtatagtg cgaggtttaa tggataccgg cattcgcaaa attctacaaa ttgagcttgc
    21781 cgttcgtcct gatagcgacc aacgtggaat gacggcaagt ggtatgattg tgatcaaccc
    21841 accgtggcag cttgaaaccc agatgaaaaa aatcctgcca tatttaaccg aggtgcttgt
    21901 gccggaagga acaggttctt ggaaggtgga gtggattacg cctgagtaaa ttaaatacgg
    21961 atagcacaag cgtggacgct tgcgccatca taaattctga tttgcaatat tttttagaaa
    22021 aataaccgct tgtcttatca agaagtgggg gaaatataaa aggaaaaaac gatgcaacaa
    22081 tacaaacacg actttattga atttgcctta agccgcaatg tgctgaaatt tggcgaattt
    22141 accttaaaat caggcagaat cagcccctat tttttcaatg ctgggctttt taacaccggg
    22201 cgcgatttag ccaaattagg cgaatattac gccaaagcca ttcaagccag cggcattgag
    22261 tatgatgtgt tattcgggcc ggcttataaa ggcattccga ttgcaaccac ggttgccgtg
    22321 gcactagcca acctgttcga tgtggataaa ccttgttgct ttaaccgcaa agaggcaaaa
    22381 gatcacggtg aaggcggtaa tttaatcggt tctcccttaa cgggcaagat tttgctggtg
    22441 gacgatgtga ttaccgcagg cacggcaatt cgtgagtcga tggaaattat caatgccaat
    22501 aatgcccagc ttgccggtgt gctgattgcg ttaaaccgta aagagaaagg caagggcgag
    22561 ttgtctgcga ttcaagaagt cgaacgtgat tacggttgcc aagttttctc gattgtggat
    22621 tttgatgatt tggtagcatt tattgaaacg tcgccacaat acgctcctta tttgccgaaa
    22681 atgcgtgaat atcgtgaaaa atacggtgtt taacttttgc aaaaaaacag caaaaactca
    22741 ccgcttgtca ctctctaatc tcaccattat gaatcacttt catcttttgg tgagattttt
    22801 tcaattaaaa agccgataaa ttgattgtga gctttagcta attggcttag gataaactcc
    22861 tgtaatacag gagttggaga actaaaatgg cacatcaaaa attacctttt cacgcagaca
    22921 ccgttggctc atatttgcgt tccgatgctt ggaaaaaagc tcacgcagac tataaagcag
    22981 gcaacatttc cctcgaacaa cgtgatgaaa ttgtagaagc ggaagtgaaa aaattagtac
    23041 aagcatcaat tagatgcggg cattcaagtt gttacagacg gcgaatatca ccgctcttgg
    23101 tggcatattg atttcttgga aaatctgaac ggcattgaag gctatgtgcc ggaaaaagcc
    23161 tatgcgttta aaggggttga ggttcgccct tataatacac gttgttgcgg taaagtgtct
    23221 tggaatccga atcacccttt tattgagcat ttcaaaaaat tcaatgcgat tgtaggtggt
    23281 cgtgcggtgg cgaaatttac cattccaagt ccaaaccaat taatgtaccc gattcagtgg
    23341 gatcacggca tttacccaaa ccgtgaggaa tttgccaaag atgtgcaaca ggcttataaa
    23401 gaggcgatta aagcgttcta tgatgccggc tgtcgttatt tgcaaattga tgatgtctat
    23461 tgggggtcgt tgtgtaataa cgttggtcaa ccgacatttg aagccgataa agctcaagcg
    23521 gtggcgaata ttcaagccat tcttgccgat aagccggaag atttaaccat taccacccac
    23581 gtttgccgag gcaactataa atcttcttat ttattgacag gggcttatga tccgattgcc
    23641 gacggcttat ttgctcaaac caactatgat gggtatttct tagaatatga tgacgagcgt
    23701 tcaggcggtt ttgagccgtt aaaacatttt gccaacaaca aagggcgtgt ggtattgggc
    23761 ttaattagtt caaaattccc tgaattggaa gataaggaag cggttaaagc ccgtattcaa
    23821 gaagcggcaa aatatgtgcc gttagagcag ctttgcctaa gcccgcaatg tggttttgcc
    23881 tcaaccgaag agggcaatat tatgtcggaa gcacagcaat gggcgaaagt tcgtcttgtg
    23941 gaggaaatcg cccaagaagt ttggggcgaa gattaattag agtgaaaaat gcccgtaaca
    24001 agcgggcatt ttttgtgaat tttttgcaaa ttcaagccat ttagcgaatg cggttaaaac
    24061 cttgttctaa atcggcaatc aaatcttcca ccgcttccaa gccaacgtga atgcgaatta
    24121 atgttcccgt cagtttgcgt tcaatcgccg ggcggatttt ggcaatttct tccggctgat
    24181 tggcaagaat cagcgattca aacccacccc aagaatacgc cattgaaaac agttcaaaat
    24241 gctctaggaa gttggctaat ttgtcattcg agagcttttc gcaaagttca aatgaaaata
    24301 gaccgcttga acctaaaaaa tcccgcttaa aaaattcgtg ccccgggcag ctttccaacg
    24361 ccgggtgata aactgctttc acttcagggc gttgagccag ccagttagct accgcaatgc
    24421 tactttgttc gtgctgtttt aagcgaatgc ctaaggtgcg tagcccccga gcggtgatgt
    24481 aagcggaatc agcatccacc atttgcccca ttaaataaga gccttcacgc agtttatccc
    24541 aacaacgggc gttagaaacc gcagtaccga tcatcacatc agaatgcccg actaaatatt
    24601 tagtgccggc ttgaatggaa atatcaatgc catattctaa agcagggaac agcacaccgg
    24661 cagaccaagt gttgtcgatc ataatcacga tttctgggtt gatttcacga gcaacacgca
    24721 cgagagtcgg aatatcaggc acttccattg ttagcgagct cggcgattct aaaaaaagca
    24781 ctttggtgtt cggttgcaca agggctttca agccttcacc aatcatcggg tcataataag
    24841 tagttgaaac acccatacgt tttaacagcg cattacagaa ttcttgtgtc ggttcgtaag
    24901 ctgcgcctgt cattaaaacg tggttgcctt gttccacaaa agctaaaatc gcattggtga
    24961 ctgccgccgc accgcaaggg taaaggtagc aacctgctcc accttctaat tcacacatcg
    25021 cttcttgtaa tgaaaaatga gtgagagtgc cacgtctgcc ataaaataat gctcctttgt
    25081 agcggttttg tgtagcgtgt tttttctctt ctaaggtttc aaacactaaa gatgaagcac
    25141 gctgaatcac cgggttaact gctccttgtg tgttacgttt tttacgccct gtatgaacaa
    25201 gtttggtgga aagattttta tagttagaca taacttttcc taaagtaaaa tgcatagggg
    25261 caaatcaaca tttgcccctt tattaataat taacgaaaca taaagttatt tctttgacgg
    25321 ctacgtttaa attggctgat tagcacaatg accgcaacaa ttaagtaaac cgcaaaagta
    25381 aagattagcc attgtgccat tgaaaagccg aacatttccc attggctttg gctacaatta
    25441 accggaccgg gggcaaacac ttgtggtagc cattggtcaa gcggcaaggt ttgcgggaaa
    25501 ttaactttaa attcgcattg attccatggt gatggattga cctgataatc gtggtgtttg
    25561 attgaaagta ctagcccttt aaatgcgcta ccaagccaaa ttagaattgc caagtagcga
    25621 ataatcgcat atctattacc aagaaatcct aaaataccgg caaataaaat accaaataaa
    25681 gcaactcgct cataaataca cattacacaa ggtactaatc ccatcccatg ttggaaataa
    25741 agcgctgtgc cttcaagtat aagacagctt aacattagta aaaaccatgc actgcgagat
    25801 tgtgatagat ttttaaaaaa atagagcata gttattcctc attttgtgaa cttaaggcat
    25861 tctaccttat ttggtatgag ttatctataa actaacgtgt aataaaccat ccccaattta
    25921 tcattacttc agtcatagaa ggtagtaaga attctaaccc taagaaaccg acaatagata
    25981 gaacaatggt ataaggtaat gccatataga ccattctgcc gtaagacagt ttaattaacg
    26041 gcgcaaagga ggacgttaat aagaataaga aagcagcttg tccgtttggg gtagcaacag
    26101 aaggaagatt tgtgccagta ttaattgcaa ctgcaatcag gtcgaactgc tcacgatcta
    26161 taatgccggc atctagtgcg gttttagctt cattaatgta aacagtaccg acgaagacgt
    26221 tatctgaaat catcgagagc aaaccattga aaatatagaa taatgaaagc tgtgaatgtg
    26281 gttcggcaga taacacaaag gcaatgatcg gctcaaataa ttttaaatca ataatcacgg
    26341 caacaaccga gaaaaacaca ataagcaatg cagtaaaagg catagattct tggaatgctt
    26401 tccctaaagt gtgttcatca gtaatgccac aaaatgcagt gcaaataatg atgatggtta
    26461 agccaataat ccctacatcg gcaagatgta gcgctaagcc aataattaac caaattccag
    26521 caatggcttg caccagcatc tttaagcgat cttgtttcgt cattttttgt tcttttagtt
    26581 ggctatagcg agcgagtacg acccaaactt tgctaggaag ccggtctcca taaccaaata
    26641 atttatattt ttctacaaga aagcaggtcg caatcccaca aattaacacg ggtaagctaa
    26701 ctggtaatgc tctaagtaag aattcgataa atccccattc cgcttgggag gcaataatta
    26761 agttttgtgg ttctcccacc atggtcatta cgccacctaa agctgagcca ataccggcgt
    26821 gcatcaataa acttcttaaa aaaccacgaa attgctctaa aatttcttta ttagagatga
    26881 ttttttcatc attggtaata tcagtagaat cttcaaagtt attacctgat gcgactttat
    26941 gatatacgcc gtagaaacct gttccaacgc taatgattac agcaataacc gttaaagcat
    27001 caagaaaggc ggataaaaaa gcagcgctta agcagaaaga aagggaaaga atttttttcg
    27061 aatgaatggc gacaagcagt ttggtgaaaa tataaagcaa taattgcttc ataaagtaaa
    27121 taccggcaac cataaacatt aaaagaagaa taacatcaaa gtttgccata atttcttctt
    27181 taatgtggtg aggatttgtc ataccgatta caactgcttc aatcgctaat aaaccacctg
    27241 gctgtaatgg ataacatttt aatgccatag agagagtaaa aataaattca gcgactagaa
    27301 accagcctgc aacaaaagga ttgataaaga aataaatgag aggattgata attaaaaatg
    27361 ccaaaatgca caatttatac cactcggggc tttttcctaa gaaacttttg aacagagcat
    27421 caatgctact catataaagg acctcaaaat ttgtaaacag atattacaat tgtaatatag
    27481 tttag
//
LOCUS       DANLZD010000016        26137 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.016, whole genome shotgun sequence.
ACCESSION   DANLZD010000016 DANLZD010000000
VERSION     DANLZD010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 26137)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26137)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26137
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.016"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            31..1023
                     /locus_tag="PXE26_000479"
     CDS             31..1023
                     /locus_tag="PXE26_000479"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HDL5593094.1"
                     /translation="MKKSFILQQQEISFVKNTFTQYLIDKLGIIEVQGPILSEVGNGM
                     QDNLSGIEKAVKVNVKCIPSATYEVVHSLAKWKRHTLARFGFKEGEGLFVHMKALRPD
                     EDSLDRTHSVYVDQWDWEKVIPEGRRNFDFLKETVNEIYKAIRLTELAVEARFDIPSV
                     LPKQITFVHSEDLVQRYPNMTSKERENAICKECGAVFLIGIGGKLSDGKPHDGRAPDY
                     DDWTTESEQGYKGLNGDILVWNEELGTAFELSSMGIRVDETALRLQVALTGDEDRLEM
                     DWHKDLLAGRLPLSIGGGIGQSRLVMFLLRKKHIGEVQSSVWPKAVFEEFENIL"
     gene            complement(1147..1566)
                     /gene="atpC"
                     /locus_tag="PXE26_000480"
     CDS             complement(1147..1566)
                     /gene="atpC"
                     /locus_tag="PXE26_000480"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HDL5593095.1"
                     /translation="MASQFELTVVSAERKIFEGTVTSVRVSGTDGELGVYAGHAPLLT
                     AIKPGMVKFTLADGKEEFIYVSGGFLEVQPTVVTVLADTAIRGEELDEQRILAAKRKV
                     EETLSKTSDADMTAKLAREIAKLRVYELTKTKLANKR"
     gene            complement(1594..2967)
                     /gene="atpD"
                     /locus_tag="PXE26_000481"
     CDS             complement(1594..2967)
                     /gene="atpD"
                     /locus_tag="PXE26_000481"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011978979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HDL5593096.1"
                     /translation="MATGKIVQIIGAVIDVEFPQDAVPKVYDALKVESGLTLEVQQQL
                     GGGVVRCIALGSSDGLKRGLKVENTNKAIEVPVGTKTLGRIMNVLGEPIDEAGPIGEE
                     ERWTIHRAAPSYEEQANSTELLETGIKVIDLVAPFAKGGKVGLFGGAGVGKTVNMMEL
                     IRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVA
                     LTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVL
                     QERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDP
                     LDSTSRQLDPLVVGEEHYNVARGVQGTLQRYKELKDIIAILGMDELSEDDKRLVARAR
                     KIERFLSQPFHVAEVFNGVPGKFVPLKETIRGFKGILEGEYDHIPEQAFYMAGSIDEV
                     VERAKQM"
     gene            complement(2988..3854)
                     /gene="atpG"
                     /locus_tag="PXE26_000482"
     CDS             complement(2988..3854)
                     /gene="atpG"
                     /locus_tag="PXE26_000482"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HDL5593097.1"
                     /translation="MAGAKEIRTKIASVRNTQKITKAMEMVAASKMRKTQERMAASRP
                     YAESIRKAISHIAKGNIEYKHPFLTPRPVKKVGYLVVSTDRGLCGGLNINLFKTVLHE
                     LKEKDDQGVKSRLAVVGNKGISFFNPMGLEIKGHINGLGDTPAMEDLVGIVNGMVNAY
                     REGEIDEVYVVYNRFINTMSQKPTVQQLLPLPALENDSLEQTGSWDYLYEPNPQALLD
                     SLLVRYLESQVYQAVVDNLASEQAARMVAMKAATDNAGNLINELQLVYNKARQASITN
                     ELNEIVAGAAAI"
     gene            complement(3880..5421)
                     /gene="atpA"
                     /locus_tag="PXE26_000483"
     CDS             complement(3880..5421)
                     /gene="atpA"
                     /locus_tag="PXE26_000483"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001176751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HDL5593098.1"
                     /translation="MQLNSTEISELIKKRIAQFNVVSEAQSTGTIVSVSDGVIRIHGL
                     SDVMQGEMIALPGNRYAIALNLERDSVGAVVMGPYADLAEGMQVQCTGRILEVPVGRG
                     LLGRVVNTLGQPIDGKGEIQNDGFSPIEVIAPGVIDRQSVDQPVQTGYKAVDSMVPIG
                     RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTIANVVRKLEEHGAL
                     ANTIVVVASASESAALQYLAPYAGCAMGEYFRDRGEDALIVYDDLSKQAVAYRQISLL
                     LRRPPGREAFPGDVFYLHSRLLERASRVNADYVERFTNGAVKGQTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLESGLFNAGIRPAVNPGISVSRVGGSAQTKLVKKLAGG
                     IRTALAQYRELAAFAQFASDLDEATRKQLSHGQKVTELLKQKQFEPMSVAQLGLSLAA
                     AEYGYLDDIPVERVGSFEANLLAYAQSNYGEFMQELSKSGNFNDEIKDKLNEILSGFK
                     KNSAW"
     gene            complement(5434..5967)
                     /gene="atpH"
                     /locus_tag="PXE26_000484"
     CDS             complement(5434..5967)
                     /gene="atpH"
                     /locus_tag="PXE26_000484"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HDL5593099.1"
                     /translation="MSELSTVARPYAKAAFDFALEQGQLEQWQQMLTFSAAVANDEQV
                     ASFLNSSLASGQISETFIKICGEQLDQYGQNFIRVMADNKRLAVLPAVLNAFLELRAE
                     QESIKDVEVVSADKLTDAQEAKIANAMEKRLGTKVRITSSIDSSLIAGVIIRYDDVVI
                     DGSSRGQLNRLSQELSL"
     gene            complement(5981..6451)
                     /gene="atpF"
                     /locus_tag="PXE26_000485"
     CDS             complement(5981..6451)
                     /gene="atpF"
                     /locus_tag="PXE26_000485"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HDL5593100.1"
                     /translation="MNLNATLIGQLIAFALFVAFCMKFVWPPLIRVIEERQANIASAL
                     ASAEKAKQEQADSKAAADQEILRAKEEAQNIIDLATKRRNEILESVQAEAEVERQRII
                     EQGYAEVESERKRVQEELRQKVAALAIAGAEKIVGRSVDAAANNDIIDKLVAEL"
     gene            complement(6512..6766)
                     /gene="atpE"
                     /locus_tag="PXE26_000486"
     CDS             complement(6512..6766)
                     /gene="atpE"
                     /locus_tag="PXE26_000486"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HDL5593101.1"
                     /translation="MESVITATIIGASILLAFAALGTAIGFAILGGKFLESSARQPEL
                     ASSLQTKMFIVAGLLDAIAMIAVGISLLFIFANPFIDLLK"
     gene            complement(6884..7672)
                     /gene="atpB"
                     /locus_tag="PXE26_000487"
     CDS             complement(6884..7672)
                     /gene="atpB"
                     /locus_tag="PXE26_000487"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HDL5593102.1"
                     /translation="MAGTTAEYISHHLSFLSTGEGFWAVHLDTLFFSLVAGAIFLWVF
                     SRVAKNATTGVPGKLQCFVEIVIEWVNGLVKDNFHGPRNVIAPLALTIFCWVFIMNAI
                     DLIPVDFLPQLANLFGIHYLRAVPTADISATLGMSICVFALILFYTVKSKGFGGLVKE
                     YTLHPFNHWAFIPVNFILETVTLLAKPISLAFRLFGNMYAGELIFILIAVMYMADNFA
                     LQALGIPLHLVWAIFHILVITLQAFIFMMLTIVYLSIAYNKADH"
     gene            complement(7695..8078)
                     /locus_tag="PXE26_000488"
     CDS             complement(7695..8078)
                     /locus_tag="PXE26_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HDL5593103.1"
                     /translation="MSAVINRAKSQYKQALKVEFFLLCVFALGVSLWKMNFNFSFLGG
                     ALASFLPHLVFVYWVFFKKSAKNQSKMTAFYRGEGMKWLVTIILVIGCFKLIPALDVV
                     LFFVGYFIALFLNNMIPFVLSKHHH"
     gene            8546..9679
                     /gene="carA"
                     /locus_tag="PXE26_000489"
     CDS             8546..9679
                     /gene="carA"
                     /locus_tag="PXE26_000489"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HDL5593104.1"
                     /translation="MFKPAILVLTDGSVFSGKSIGADGHTIGEVVFNTAMTGYQEILT
                     DPSYTKQIVTLTYPHIGNTGINLEDKESPNVCASGLIIRDLPLLHSNFRASSSLSDYL
                     IQQNIVAIADIDTRRLTRILREKGAQAGCILVGDATEENIANALAFANSFGSMAGKDL
                     AQSVTCNELYKWTDGEWQLGKGYVPQQQTEFHVVAYDYGVKHNILRMLAERGCRLTVV
                     PAKTSAEAVLALNPDGIFLSNGPGDPEPCDYAITAIRKLLETQKPIFGICLGHQLLGL
                     AAGGKTKKMVFGHHGANHPVQDLDSQKVLITSQNHGFEVDESSLPSNVRVTHRSLFDG
                     TVQGIELTDRPAFSFQGHPEASPGPNDVAYLFDRFVSEMKKVK"
     gene            9782..12988
                     /gene="carB"
                     /locus_tag="PXE26_000490"
     CDS             9782..12988
                     /gene="carB"
                     /locus_tag="PXE26_000490"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HDL5593105.1"
                     /translation="MPKRTDINTILIIGAGPIVIGQACEFDYSGAQACKALREEGYKV
                     VLVNSNPATIMTDPNMADVTYIEPIEWKTVEKIIEKERPDAILPTMGGQTALNCALDL
                     SKNGVLKKYNVELIGATEDAIDKAEDRGRFKEAMTKIGLNTPKSFVCHSFEEALAAQE
                     QVGFPTLIRPSFTMGGSGGGIAYNRDEFIAICERGFEASPTHELLIEQSVLGWKEYEM
                     EVVRDRADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIG
                     VDTGGSNVQFAINPANGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLNE
                     LRNDITGGLIPASFEPTLDYVVTKIPRFAFEKFANADDRLTTQMKSVGEVMAMGRTFQ
                     ESLQKALRGLETGICGFNLLSEEPEKIRRELANPGPNRILYVADAFGAGFSLEEVHHY
                     SKIDPWFLVQIQDLVLEELALEKKQFSDLDANEIRRLKRKGFSDKRIAQLTKVSEKMV
                     RDYRHTYAILPVYKRVDTCAAEFASDTAYLYSTYEEECEAKPSDRKKVMILGGGPNRI
                     GQGIEFDYCCVHASLALREAGYETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIV
                     RVENPWGVIVHYGGQTPLKLANALSDAGVNIIGTSADSIDAAEDRERFQQILNTLGLK
                     QPANRTARNALEAVALANEVGYPLVVRPSYVLGGRAMQIVYNDEELNRYMREAVSVSN
                     DSPILLDHFLNNAIEVDVDCICDGENVLIGGIMQHVEQAGIHSGDSACSLPAYSLSGH
                     VLDEIRKQTNAMAFALGVKGLMNVQFAVQNEVVYVLEVNPRASRTVPFVSKATGRPLA
                     KIAARVMAGETLADLNALEEIIPSKFFVKEAVFPFIKFPGVDTILGPEMRSTGEVMGI
                     GNTFAEAFFKAQLGAGERIPKVGKVFMSVIEEHKPALIYIAKRFQEQGYGLCATFGTA
                     NFLRQHGIAVQTVNKVREGRPHIVDAIKNGEIALVINTVSGEPEVIADSHSIRRTALQ
                     QRVPIYTTLAGADAISYGVKHINEFDVYSVQELEQKAN"
     gene            complement(13063..13854)
                     /locus_tag="PXE26_000491"
                     /pseudo
     CDS             complement(13063..13854)
                     /locus_tag="PXE26_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072249.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose isomerase"
     gene            14057..15055
                     /gene="yiaK"
                     /locus_tag="PXE26_000492"
     CDS             14057..15055
                     /gene="yiaK"
                     /locus_tag="PXE26_000492"
                     /EC_number="1.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydro-L-gulonate 2-dehydrogenase"
                     /protein_id="HDL5593106.1"
                     /translation="MRVSYEELKAQFKRVLLARNVREEIAEECATVFADTTQAGAYSH
                     GVNRFPRFIQQLENGDIVPEAVPTKVLSLGAIEQWDAHQAIGNLTAKKMMDRAMELAS
                     ENGIGVVALRNANHWMRGGSYGWQAAEKGYIGICWTNALAVMPPWGAKECRIGTNPLI
                     IAVPTNPITMVDMSCSMYSYGMLEVHRLAGRQTFVDAGFDDDGNPTRDPATVEKNLRL
                     MPMGFWKGSGLSIVLDMIATLLSNGESTAAVTEDKDDEYCVSQVYIAIEVDRLIDGKT
                     KDEKLNRIMEYVKTAERADPDVAVRLPGHEFTQILADNKANGIPVDDTVWAKLQAL"
     gene            15180..15545
                     /locus_tag="PXE26_000493"
     CDS             15180..15545
                     /locus_tag="PXE26_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HDL5593107.1"
                     /translation="MFFGHISQVKANRYPPAIQIALNYLKNTDFDAMEAGVYELKGRQ
                     IYVQVLDLNTKSKHEFQPEVHRNYLDVQYLHRGKEIMAAAVDTGTNPIAMEYNPERDI
                     QYYQSVANENEFRCVEGNF"
     gene            15609..16088
                     /locus_tag="PXE26_000494"
     CDS             15609..16088
                     /locus_tag="PXE26_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HDL5593108.1"
                     /translation="MKALAQLVGKLLEILVVVILSAMSILVFVNVVLRYGFNSSISVT
                     EEVSRYMFVWLAFLGAVLAFSENQHVKVTMLTDKLSPTARNILSVVTDLAMLFCCYLI
                     VDGSWIQFNLNLNNFAPISGLPQGITFLASTVAGVLIGLLIIARIVATVGVIAKGEK"
     gene            16089..17366
                     /locus_tag="PXE26_000495"
     CDS             16089..17366
                     /locus_tag="PXE26_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HDL5593109.1"
                     /translation="MTVVIFLSVLLGSILLGIPVAFALLVCGVALMLHLDLFDAQILA
                     QQIVSGADSFSLMAIPFFILAGEIMNEGGLSKRIIDLPMKLVGHKRGGLGFVAILAAM
                     IMASLSGSAVADTAAVVAMLLPMMKTTGYPIDRSAGLIGTAGIIAPIIPPSIPFIVFG
                     VASGVSITKLFLAGIFPGIMMGICLAALWWWQAKRLDLMTFSKATKEELCISFKNSIW
                     ALLLPVIIIGGFRSGMFTPTEAGAVATFYALIVSLFVYREMKFKDLYKVVLAAAKTTA
                     VVMFLVAAANVTGWLITVAELPMMLTELLEPLIESPTTLLLVIMLAVFIIGMVMDLTP
                     TVLILTPVLMPLVEEAGIDPVYFGVLFILNTSIGLITPPVGNVLNVITGVSKLPFDQA
                     AKGVMPYLVMMICLLLLFVFFPSLVLVPLSWMQ"
     gene            17469..18455
                     /locus_tag="PXE26_000496"
     CDS             17469..18455
                     /locus_tag="PXE26_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL5593110.1"
                     /translation="MKLFNLKTLFALVAGVAVMSGSAMAETSLRFGYEAPRSDTQHIA
                     AKKFDELLAAKTKGEIKLKLFPDSTLGNAQTMISGVRGGTIDIEMSGSPNFTGLEPKL
                     NVIDIPFIFKDREHVYKVLDGEVGQGLLKDLEAQGLKGLAFWDVGFRAFSNSKHPVTK
                     PEDIKGLKVRTNQNPMYIQAFTLLGGNPVPMPLSELYTALETRAVDAQEHPIGIFWSA
                     KLFEVQKHLSLTNHGYTPLIVVMNKAKFDGLAPELQTALVEAAKEAGQFQRDLNVKNE
                     KEIIEKLRKQGIEVIEQVDNAPFKAAIEAEVRKAFVEKHGDELLKKVDALAQ"
     gene            18529..19512
                     /locus_tag="PXE26_000497"
     CDS             18529..19512
                     /locus_tag="PXE26_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL5593111.1"
                     /translation="MKLFNLKTLAAFVAGFALFSTAQAETSFRFAYEAPRSDTQHIAA
                     KKFNDLLQEKSQKGLKLSLFPDSTLGNAQTAISGVRGGTIDIAMSSSSNFTGLEPKLN
                     VIDIPFIFKDRDHAYKALDGEIGQGLLTALEAHGLKGLAFWEVGFRAFSNSKHPITKP
                     EDIKGLKIRTNQNPMYIQAFSILGANPVPMPLSKLYTALETKAVDAQEHPIGIFWSAK
                     LYEVQKYFSFTNHGYTPLIVAINKAKFDALPAEQQTALVEAAKEAGKYQRQLNLENEQ
                     KIIDSLKKAGIEFVDNLDTTPFKDAVSAETRKAFIEKNGDGLVKAIDALAK"
     gene            19643..21127
                     /locus_tag="PXE26_000498"
     CDS             19643..21127
                     /locus_tag="PXE26_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5593112.1"
                     /translation="MQHIIKRFGSHTAVNDVSLDIHSGEIVALLGENGAGKSTLIKIL
                     AGIYDRDEGDILFHNQKIQSAHAIEKGNKKPIAFIHQDLGLIEWMTIAENMAFVMGFP
                     RKFGLIDWAKVREQSQKALDFVGIKLSADTRVFDLSRTEKALLAIARAIAVNAEILVL
                     DEPTASLPASDVEHLFTVLNRLRSQGVGMIYVTHRLDEVIAISDRILVMRDGFPVAEG
                     QTKLYDVKGLVKAIVGEESRGRQRVDLPTDTPEILSLQNVVVGDTGPVNFRLHKGEMI
                     ALAGLRGAGQEEIGRLLFGERTLDKGEIQLDKRSYSAKDPQDAIAKGVALVAGDRTRE
                     SVFMSMTTSENLFINPVLSGHSPLKRYSRREEWGESWYKFQLFDIRPKNLFIDASALS
                     GGNQQKIVLARWMHLNTPVLILEDPTAGVDVGARAEIYDLLNKALAEGVAIIVISTDF
                     EEIAHLCNRALVFNRGEIAGELLNEEVTFANLLALASDSQSKKQ"
     gene            21322..22368
                     /locus_tag="PXE26_000499"
     CDS             21322..22368
                     /locus_tag="PXE26_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5593113.1"
                     /translation="MAQTNIKSTALEQPVSIARDGFMAWFSQMSTRYGLLWLCVLLVI
                     IFSLTTESFASMLTLNAILESKSKIALLALAATTTMIVGKIDLNVGFGIVLWHILVIT
                     LQVQYGFSWYMAILIVLVIAALYGLLNGILVALADIDSFVATLGSGTVLYAVALWHSG
                     GRQIVGDLPDEFIALNSTEIFGIPISAFYVLAVAIVMWLVTEHTPTGRCMYAVGGNPT
                     AARLNGINIKKYTIVPFIVSSVITAFTGVLISAQQGVGQASVGMDYLLPALVGAFLGS
                     TTIRPGRINVWGTVVGIAILAIGISGIQQFGGAFWVEPLFNGATLLLSITIAGYAQRK
                     RLLNQKAVQKKSTN"
     gene            22381..23490
                     /locus_tag="PXE26_000500"
     CDS             22381..23490
                     /locus_tag="PXE26_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL5593114.1"
                     /translation="MKKAFRTTLTAIATLTAIAFGNNAFANDDPFVQEAKQLVAAATA
                     KQEKWDGPTTGPQLQKEKTVIFIASDMKNGGVLGVIDGMKEAVGVTGWKLDVLDGAGT
                     VNNQLAALNQAIARKPDAIVIGGWNPNVAKIPLQKATKNGIKLAAWHATPEPGAIDKY
                     GIFYNVTSDSDEIARLSAMLAVAESNGKAKAIILTDSLYEIALRKANVMKEVIEKCKE
                     CKVLEFIDTPLADTSSRMPNLTFSLLQKYGDDLEYALAINDLYFDFMAPSLRTAGKDK
                     PFSISAGDGSVTAYQRIRNGDKQFATVPEPLNLHGWQLVDELNRAFANEKPSGYITPA
                     HLVTKENVAFDGGENNLYAPQNGYKGAYKAIWGVK"
     gene            23595..24485
                     /locus_tag="PXE26_000501"
     CDS             23595..24485
                     /locus_tag="PXE26_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HDL5593115.1"
                     /translation="MSNKFIPKISNPRFNELVGNTFELEELFDKAIWAEGPAWSKPQQ
                     ALYFSDVKGCTMYRWTEQDGTQVFRQPSYFSNGNAFDANDNLITCEHGNRGISLTTPS
                     GEYRFLVGQLDGKRLNSPNDVVVKSDGIIWFTDPPYGILSDNEGKQSPSEIIGCYIYC
                     YDPKTDKLNIATFNTMRPNGLAFSSDEKQLFVADMSSVEFDEDGLHHLVVFDVDGNKL
                     KNRRDVAEISPGIPDGFRIKQNGVIFCSCEEGIIALLPDGTELGRFVLGKLTSNCSFG
                     DDEQTLFITCSNSVYRLTIK"
     gene            24557..26026
                     /locus_tag="PXE26_000502"
     CDS             24557..26026
                     /locus_tag="PXE26_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HDL5593116.1"
                     /translation="MDNKMNYTLGIDCGGTFIKAALFDTQGNIQALHRENVSVISEQA
                     GYAERDMSQLWAICAEVVRSTIEKSGVNPADIKAVGISAQGKGAFLLDKQNRPLGRAI
                     LSSDQRSLEIVKQWQAEGIPQQLYPITRQTLWTGHPVSILKWVQQNEPERYAQIGAVL
                     MSHDYLRFCLTGELHCEETNISESNLYNMEKGEYDQQLADLLGMPDVLEKLPPVIEPN
                     KISGYVTENAAKLTGLAVGTPIVGGLFDVVSTARCANLDDETKLNAVLGTWSVVSGIT
                     DHIDASQSLPFVYGRYAEAGKFIVHEASPTSAGNLEWFVNQWKLDYVKINQAVAQLPP
                     AASSVLFVPFLYGSNAGLGMQAGFYGMQAHHTQAHLLQAIYEGVLFSLMSHLNRMFIR
                     FPKADVLRVTGGPVKSKVWMQMLADLTGMRLEIPQMEETGCLGAALMAMQGVGLDISQ
                     VQALNNEMQVFEPNPENYAAYQTKYQRYQKLTEALNTMI"
BASE COUNT         7500 a         5744 c         5712 g         7181 t
ORIGIN      
        1 atcaacattc tttaattagg aaagcaaaca atgaaaaaat cttttatttt acagcaacaa
       61 gaaatcagtt ttgttaagaa cacatttact caatatttaa ttgataaatt aggcattatt
      121 gaagttcagg ggcctatttt gagcgaagtc ggcaacggta tgcaagacaa cctttccggt
      181 atcgaaaaag cagtaaaagt aaacgtaaaa tgtattccaa gcgctactta tgaagtggtt
      241 cattctcttg caaaatggaa acgccacacc ttagctcgtt ttggatttaa agaaggagaa
      301 gggttatttg ttcatatgaa agctcttcgc cctgatgaag attctttaga tcgcacacac
      361 tcggtatatg ttgaccaatg ggactgggaa aaagtcattc ctgaaggtcg ccgcaacttc
      421 gatttcttaa aagaaacggt aaacgaaatc tataaagcaa ttcgtttaac cgaattagcg
      481 gtggaggctc gtttcgatat tccatctgta ttgcctaaac aaattacttt cgttcacagc
      541 gaagacttag tgcaacgcta tccgaatatg accagcaaag agcgtgaaaa tgctatctgt
      601 aaagagtgcg gagcggtgtt cttaatcggt atcggcggca aattatcaga cggtaaacct
      661 cacgatggac gagctccgga ctatgatgac tggacaaccg agtccgaaca aggctacaaa
      721 ggcttaaacg gcgatatttt agtttggaac gaagaactcg gcacagcctt tgaactttcc
      781 tcaatgggta ttcgtgtaga tgaaaccgcc ttacgcttac aagttgcttt aactggcgac
      841 gaagaccgcc tcgaaatgga ttggcacaaa gatttattag ccggcagact cccgctttct
      901 atcggcggcg gtatcggtca atctcgctta gtgatgttct tactacgcaa aaaacacatc
      961 ggtgaggtgc aatccagtgt ctggccaaaa gcggtatttg aagagtttga gaatattctt
     1021 taataaaaca aaaaagcgaa ccttagggtt cgcttttgct ttctacaagc ggtcttattt
     1081 tgcaaaaaat ttactgtttt taaccgcttg taaaacaaaa ccccactttc gtggggtttt
     1141 ttgatattaa cgtttattcg ctaatttggt tttagtgagt tcgtaaacac gcagtttcgc
     1201 aatttctctc gctaacttcg cggtcatatc cgcatcgctg gtttttgaaa gtgtttcttc
     1261 tactttgcgt tttgcggcaa gaatacgctg ttcgtctagt tcttcaccac gaattgcggt
     1321 atcagccaac actgttacta cggtcggttg tacttcaagg aaaccacctg aaacgtagat
     1381 aaactcttct ttgccgtcag ctaaagtgaa tttaaccatt cccggtttaa ttgcggttaa
     1441 taacggtgca tgccctgcat acacccctaa ttcaccatct gtccctgaaa cacgcacgct
     1501 ggtaactgtg ccttcaaaga ttttacgttc tgcactcact accgtgagtt caaattgaga
     1561 tgccatgttg ttctccttta gtttagaaca aaattacatc tgttttgctc tttcaaccac
     1621 ttcgtcaatt gaacccgcca tatagaacgc ttgttccgga atatggtcgt attcgccttc
     1681 taaaatgcct ttaaagccac gaattgtttc ttttaacggt acgaatttgc ccggtacgcc
     1741 gttgaatact tccgcaacgt ggaatggttg tgaaaggaaa cgttcgattt tacgcgcacg
     1801 agcaacaagg cgtttgtcgt cttccgataa ttcatccata cccaaaattg caatgatgtc
     1861 ttttaactct ttataacgtt gtaatgtacc ttgtacacca cgagcaacgt tatagtgttc
     1921 ctcaccaacc acgagtggat ctaactgacg agaggttgag tcaagagggt caaccgccgg
     1981 gtaaataccg agtgaagcga tattacggct taataccacc gttgagtcta agtgggcaaa
     2041 ggtagttgcc ggagacgggt cagttaagtc atccgccgga acatataccg cttgcacaga
     2101 ggtaatagag ccggttttgg ttgaggtaat acgctcctgt aatacgccca tctcttctgc
     2161 aagagtcggc tgataaccta ccgcagacgg catacgacct aataacgcag atacttcggt
     2221 accagctaaa gtataacggt agatgttatc cacgaagaat aatacgtcac gaccttcatc
     2281 acggaatttt tctgccatgg ttaagccggt taatgccaca cgcagacggt tgcccggtgg
     2341 ttcgttcatt tgaccgtaaa ccagcgatac tttgtctaat acgttagagt ctttcatttc
     2401 gtggtagaag tcattaccct cacgagtacg ctcacctaca ccggcgaata ccgagtaacc
     2461 gctatgttcg atagcgatgt tacggattaa ctccatcata tttacggttt tacctacacc
     2521 cgcaccaccg aataagccaa ctttaccacc cttagcaaat ggagcaacta agtcgataac
     2581 tttgataccg gtctctaaaa gctcggtgct gttcgcttgt tcttcgtagc ttggtgctgc
     2641 acggtggatt gtccaacgtt cttcttcacc gattgggcct gcttcatcaa ttggctcacc
     2701 taatacgttc ataatacgac cgagtgtttt tgtaccaacc ggtacttcaa tcgctttatt
     2761 cgtattttca acttttaagc cacgttttaa accatcagat gaaccaagtg cgatacaacg
     2821 gaccacaccg ccacctaatt gttgttgaac ttcaagggtt aatcctgatt caacttttaa
     2881 tgcatcataa acttttggta ctgcatcttg cggaaactca acatcgatta ccgcaccgat
     2941 gatctgtaca atttttcccg ttgccattac cgttcctcta ttcattgtta aattgctgcg
     3001 gcacccgcga caatttcatt taattcattc gtaatacttg cttgacgagc tttgttatac
     3061 actaactgta actcattaat cagattacct gcgttatcgg ttgctgcttt cattgccacc
     3121 attcgagcag cctgttcaga cgcaagatta tctaccactg cctgataaac ttgagattct
     3181 aaataacgaa ccagtaagct gtctaataac gcttgtggat ttggttcata gagataatcc
     3241 caagaaccag tttgctctaa tgagtcattt tccagtgcag gcaaaggaag caactgttgt
     3301 actgtcggtt tttgtgacat cgtgtttata aaacggttat ataccacata cacttcatca
     3361 atttcgcctt cacggtaggc atttaccata ccattaacaa taccgactaa atcttccatt
     3421 gccggtgtat cacccaatcc attgatatga cctttaatct ctagccccat tgggttaaaa
     3481 aaggagatcc ctttatttcc caccacagca agtcgagact taacaccttg gtcatctttt
     3541 tctttcaatt catgtaaaac ggttttaaat aaattgatat ttaagccacc acataaaccg
     3601 cgatcggttg aaactactaa atagccaact ttttttaccg gacgtggggt caaaaatggg
     3661 tgtttatact caatgttacc tttggcaata tggctaattg ccttgcgaat actttcagca
     3721 taagggcgag aagccgccat acgctcttgg gttttacgca tttttgatgc ggcaaccatt
     3781 tccatcgctt tggtaatttt ttgtgtatta cgaacacttg caattttggt tcttatctct
     3841 ttagcacctg ccatattatt tctccgctaa aaagttagat taccaagcac tgttcttttt
     3901 gaaaccagat aaaatctcgt tcaatttatc tttaatttca tcgttgaaat tgccggattt
     3961 tgacagttct tgcataaact cgccgtagtt actttgagca taagctaata agtttgcttc
     4021 aaatgagcca acacgctcaa ccggaatatc atctaagtaa ccgtattcag ctgctgctaa
     4081 tgataaacct aattgtgcaa cagacatcgg ctcgaattgt ttttgtttca acaattcagt
     4141 tactttttga ccgtgtgaaa gctgtttacg tgttgcttca tcaagatctg atgcgaactg
     4201 ggcaaatgcc gctaattcac ggtattgagc aagtgcggta cggataccac cggcaagctt
     4261 cttaaccagt ttagtttgtg cagaaccacc tacacgggaa accgagatac ccgggtttac
     4321 cgcagggcga ataccggcat tgaataagcc tgattctaag aaaatctgac catcggtaat
     4381 tgaaattacg ttagtcggta cgaaggctga aacgtcacct gcttgggttt cgatgatcgg
     4441 taatgcggtt aaagaaccgg tttgaccttt cacagcaccg ttagtgaaac gttctacata
     4501 gtctgcattt acacgagacg cacgctctaa taagcgagag tgtagataga acacatcacc
     4561 cgggaatgct tcacgacccg gtggacggcg taataacaat gaaatttgac ggtaagcaac
     4621 tgcttgctta gacaaatcat cgtaaacgat caacgcatct tcaccacggt cacggaagta
     4681 ttcacccatt gcacaacctg cataaggtgc aagatattgt aatgcagcag attcagacgc
     4741 agaagccact acaacgatag tgttcgctaa tgcaccgtgt tcttctaatt tacgcaccac
     4801 gttggcgata gttgatgcct tttgaccgat tgcaacgtag atacatttaa tgcctgaatc
     4861 acgttggttg atgatcgcat caatcgctaa tgcggtttta ccggtttgac ggtcacctat
     4921 aatcaattca cgctgaccac gaccgattgg taccattgag tccaccgctt tgtaaccggt
     4981 ttgaaccggt tgatcaaccg attgacggtc gataacgccc ggtgcgatca cttcgattgg
     5041 tgagaaaccg tcattttgga tttcgccttt accatcgatt ggctgaccta aggtatttac
     5101 aacacgacct aataagccac gaccaaccgg cacttctaaa atacgaccgg tacattgtac
     5161 ttgcatacct tctgctaaat cggcataagg tcccattaca actgcaccaa cagaatctct
     5221 ttctaagttt aatgcaatcg cataacgatt gcccggtaat gcaatcattt caccttgcat
     5281 tacatcagat aagccgtgga tacgaataac cccgtcactt accgaaacga ttgtccctgt
     5341 gctttgagct tcactcacca cattaaactg ggcaatacgt tttttaatca attcactaat
     5401 ttcagttgaa tttagttgca ttttttattc ctcttacaag ctcaactctt gactcaagcg
     5461 gtttagctgt ccacgactac taccatcaat cactacatca tcataacgaa tgatcacacc
     5521 cgcaattaat gaactatcta ttgatgaagt aatacgtact ttcgttccga gtcgcttttc
     5581 catcgcattg gcaatttttg cttcttgtgc atctgttaat ttatctgcag aaacaacctc
     5641 aacatcttta attgattcct gttctgctct taattctaaa aatgcattca ataccgcagg
     5701 taatactgct aaacgcttgt tatcagccat tacgcgaatg aaattttgcc catattgatc
     5761 taattgttcg ccacaaatct tgataaacgt ctcagaaatc tgaccgcttg caagtgatga
     5821 gttaagaaaa ctagctactt gctcatcgtt agcgacggcg gcagaaaaag ttaacatctg
     5881 ctgccattgt tccaattgac cttgttctaa agcaaaatcg aaagccgctt tagcataggg
     5941 gcgagctact gtgcttaatt ctgacatctg cccctcctag ttatagttcc gcaactagct
     6001 tatcaataat atcgttgttc gcagcggcat ccaccgaacg acccacgatt ttttctgcac
     6061 cagcaatagc caatgcagcc actttttgac gaagctcttc ttgaacgcgt ttacgttcgc
     6121 tttcaacttc cgcgtaaccc tgttcaataa tacgttgacg ttccacttca gcttctgctt
     6181 gtacagattc taaaatttca ttacgacgtt ttgttgctaa atcaatgata ttttgtgctt
     6241 cttctttcgc tctaaggatt tcttgatccg cagccgcttt agaatcagct tgttcttgtt
     6301 tcgctttttc ggcagaagcc aatgcgctag caatatttgc ctgacgctct tctatcactc
     6361 gaattagcgg tggccataca aacttcatac agaacgcaac aaaaagtgcg aacgcaatca
     6421 gttgaccaat tagtgttgca tttaaattca caacgccctc ctaaaagccg gtaaagttat
     6481 tcaactgaat aacggttaat caaatcccga cttatttcaa taaatcaatg aacgggtttg
     6541 cgaagatgaa tagtaatgaa atacctacag cgatcattgc gatagcatct aaaagaccag
     6601 caacgataaa cattttagtt tgtaagcttg atgctaattc cggctgacgt gcagatgact
     6661 ctaagaattt gccacctaag atagcaaagc cgatagcagt accaagagca gcgaaagcta
     6721 ataaaattga agcaccaata attgttgctg tgattactga ttccataatg ttctccatta
     6781 gattgaggaa ttagcccgaa ggctgggttg ttgataaaaa tacatatcaa gcggtcaata
     6841 ttttgcaaaa atttgcgaaa aacctaccgc ttgtaaggct agtttaatga tccgctttgt
     6901 tataagcgat actcaaataa acaatcgtta gcatcataaa aataaaggct tgaagcgtaa
     6961 taactaaaat atggaaaatc gcccaaacca agtgtaatgg aatccccaac gcctgtagag
     7021 cgaagttgtc tgccatatac attactgcaa taaggataaa gattaactca cctgcataca
     7081 tattaccgaa taaacggaac gccaatgaaa tcggttttgc caaaagcgtt accgtttcaa
     7141 gaataaagtt taccggaatg aatgcccagt ggttaaacgg gtgtaacgtg tattctttca
     7201 ctaaaccgcc aaaacctttc gatttcaccg tgtaaaataa aattaacgca aatacacaaa
     7261 tagacatacc cagtgttgca ctaatatctg ccgttggtac tgcacgcaaa tagtgaatac
     7321 caaacagatt ggctaactgt ggtaagaaat cgaccgggat aaggtcgatc gcattcataa
     7381 taaacaccca acagaaaatc gttaatgcta atggtgcaat tacattgcga ggtccgtgga
     7441 agttatcctt cactaaaccg tttacccact caataacaat ctcaacaaaa cattgcaatt
     7501 ttcccggaac gcccgttgtt gcattttttg ctacacgcga gaacacccat aaaaaaatcg
     7561 cacctgccac taaagagaag aacagtgtat ctaaatgcac tgcccaaaag ccttcacctg
     7621 tcgataaaaa actcaagtga tggctaatat attctgctgt cgttccagcc ataacatatc
     7681 cttttaaatt aaaattagtg gtgatgtttg cttaatacaa acgggatcat attatttaaa
     7741 aataatgcga taaaataacc cacgaaaaac aacacaacat ctagagcagg gataagttta
     7801 aaacagccga tcaccaaaat aatagtaacc aaccatttca ttccttcacc acgatagaaa
     7861 gcggtcattt ttgactgatt ttttgcagat ttcttaaaga aaacccaata tacaaacaca
     7921 agatgaggca aaaaactcgc taaagcaccg cctagaaagg aaaaattaaa attcattttc
     7981 cataaagaca ctccaagtgc aaaaacgcac aagagaaaaa attcaacctt taatgcttgt
     8041 ttatattgtg attttgctct attgattaca gctgacacat tttatccttt ttgaataagt
     8101 aaaccacaca atcaggctaa taattagcca ctgttgaatc aaagaaaatc cgtgctaaat
     8161 tatactttac aaatgaattg ttgcaaccga aaagcgacac aaaaacttgt tattcttcac
     8221 atttttgaaa aaaaatttta tttacgttgc atttttttga gtaaaaccat caaaatcagt
     8281 taacaaaaaa acaacaaata gaggtgtgtg tatttttctc tgtcacatta tttcaatatt
     8341 tgataaattc cccttgctta aaaatgaata aaaattcata ataattgcat atattttcac
     8401 ttccgagtag aaaatgaaat aaaaaaagaa gaaagaaata ggcaaaataa ctaattttta
     8461 cttgaatgca aacgtttgct tgattaaact tagtcgccta cttctaaggc tacacagata
     8521 aaatttgatg attaggagta aaacaatgtt caaaccagca attctggttc tcactgacgg
     8581 ttctgtcttt tccggcaaat ccattggtgc tgacggtcac actatcggtg aagtggtatt
     8641 taacactgcg atgaccggtt atcaagaaat ccttaccgat ccttcttata ctaaacaaat
     8701 agtcaccctg acttaccccc acattggcaa taccggcatt aatttagaag ataaagaatc
     8761 ccccaatgtt tgtgcctccg gcttaattat tcgtgatctt cctcttctcc atagcaactt
     8821 ccgtgcgtcc tcctcacttt cagattatct cattcaacaa aacattgtcg ctattgccga
     8881 tattgatacc cgccgtttaa cccgaatttt acgcgaaaaa ggggcacaag ccggttgtat
     8941 tttagtaggc gatgccacag aagagaatat tgctaacgct ttggcatttg ccaacagttt
     9001 cggttctatg gctgggaaag atttggctca aagtgtcacc tgcaatgaat tatataaatg
     9061 gacagatggt gaatggcaat taggtaaagg ttatgtaccg caacaacaaa ccgagttcca
     9121 cgtagttgcc tatgattacg gtgtaaaaca caacattttg cgaatgcttg ccgaacgagg
     9181 ctgtcgctta accgttgtgc cggcaaaaac ctctgctgaa gctgtgcttg cgttaaatcc
     9241 ggacggtatt ttcctttcta acggcccggg ggacccggag ccgtgcgatt atgccattac
     9301 cgcaatccga aaattattgg aaacgcaaaa acccattttc ggcatttgct tagggcatca
     9361 acttttaggt ttagcggcag gcggtaaaac caaaaaaatg gtgtttggtc atcacggagc
     9421 taatcacccg gtacaagatt tagacagcca aaaagtgctc atcaccagcc aaaaccacgg
     9481 ttttgaagta gatgaatcca gcttaccatc taatgtgcga gtgactcacc gctcactgtt
     9541 tgacggcacg gtgcagggga ttgaactcac tgatagaccg gcgttttcgt tccaaggtca
     9601 cccggaagcc agcccggggc cgaatgatgt tgcctattta tttgaccgat ttgtcagtga
     9661 gatgaaaaaa gtgaagtaag gacgtaccta tgtgtgtcca tcaagcggtc gaaatttgca
     9721 aaaaacttac caaaaatgac cgcttgtagc ctgaaataaa cgagataaaa gagagcccaa
     9781 aatgccaaaa agaacagaca taaacactat cctaattatc ggtgccggtc cgattgtgat
     9841 cggtcaagcg tgtgaatttg actactccgg agcccaagcg tgcaaagcgt tgcgtgaaga
     9901 agggtataaa gtggtgttgg tgaactccaa ccctgcaacc attatgaccg acccgaatat
     9961 ggcagatgtg acttacattg agccgattga atggaaaacg gttgaaaaaa tcattgaaaa
    10021 agaacgccct gatgccattt taccgactat gggcgggcag acagcgttga actgtgcctt
    10081 agatctttcg aaaaacggtg tgctgaaaaa atataatgta gagctgatcg gagctaccga
    10141 agacgcgatt gataaagccg aagatcgtgg tcgttttaaa gaagcaatga ctaaaatcgg
    10201 cttgaatacg ccaaaatcat tcgtttgcca cagttttgaa gaggccttag cagcacaaga
    10261 gcaggttggc tttccaaccc tgattcgccc ctctttcacg atgggaggct ccggcggtgg
    10321 tattgcttat aatcgagatg aatttatcgc catctgcgaa cgtggttttg aagcctcgcc
    10381 tactcacgaa ttactgattg aacaatccgt actaggctgg aaagagtatg aaatggaagt
    10441 tgtgcgtgac cgtgccgata actgcattat cgtctgctcg attgaaaact tcgacccgat
    10501 gggtgtacac accggcgact ccattaccgt tgctccggca caaacgctaa ccgataaaga
    10561 gtatcaaatt atgcgtaacg cttcgctggc ggtattgcgt gagatcggcg tggacaccgg
    10621 cggttcaaat gtgcaatttg cgattaaccc tgcaaacggc gagatgatcg tcattgaaat
    10681 gaaccctcgt gtgagccgtt cttctgcact cgcatctaaa gccaccggct tcccgattgc
    10741 caaagttgcg gcgaaattgg ctgtaggcta cacactcaac gaattgcgta acgacatcac
    10801 cggagggctg attccggctt cattcgagcc gactttagat tatgttgtga ccaaaattcc
    10861 acgcttcgcc tttgaaaaat ttgccaatgc agacgaccga ttaaccactc aaatgaaatc
    10921 ggtaggcgaa gtaatggcaa tgggaagaac cttccaagag agtttacaaa aagccttgcg
    10981 aggcttggaa accggcattt gcggctttaa cttgctttcc gaagagcctg aaaaaatccg
    11041 ccgtgaactt gccaaccccg gaccaaaccg tattttgtat gttgccgatg cctttggagc
    11101 aggcttttca ttggaagaag ttcaccacta ttctaaaatc gacccgtggt tcttggtgca
    11161 aattcaagac ttagtacttg aagaattagc gttagagaaa aaacagttta gcgatctaga
    11221 tgctaacgaa atccgccgct taaaacgcaa aggcttctca gacaaacgta tcgcacagct
    11281 taccaaagtc agcgaaaaaa tggtgcggga ttaccgccat acttacgcta ttctaccggt
    11341 gtataaacgg gtagatacct gtgcagccga gtttgcctca gatacggctt acctctattc
    11401 tacttacgag gaagagtgtg aagccaaacc gtctgatcgc aaaaaagtga tgattttagg
    11461 cggcggacca aaccgtatcg ggcaggggat tgaatttgac tactgctgcg ttcacgcctc
    11521 gcttgctctg cgtgaggcag gttatgaaac cattatggtg aactgcaacc ctgaaaccgt
    11581 ttccaccgat ttcgacacct ccgaccgcct ctatttcgag ccgctaacat tagaagatgt
    11641 actggaaatt gtgcgtgtag aaaacccgtg gggcgtgatt gtgcattacg gcggtcaaac
    11701 accactgaaa ttagcgaatg ccttatctga tgccggtgta aacattatcg ggacttccgc
    11761 cgacagcatt gatgccgccg aagaccgtga acgtttccaa caaattctaa acactctcgg
    11821 tttaaaacag ccggcaaatc gcaccgcccg taatgcgttg gaagcggtgg cattggcaaa
    11881 tgaagtaggc tatccgctgg tggttcgccc atcttatgtg ctaggtggtc gggcaatgca
    11941 aattgtgtat aacgatgaag agctaaaccg ctatatgcgt gaagcggtat cggtttccaa
    12001 cgacagcccg attttactcg accacttcct caataatgcg attgaagttg atgtggattg
    12061 catttgtgac ggcgaaaatg tactcattgg cggcattatg caacacgttg agcaagccgg
    12121 tattcacagt ggcgatagtg cctgctcact acctgcctat tcgttaagcg gtcatgtttt
    12181 ggacgaaatt cgcaaacaaa ccaacgcaat ggcgtttgct ctcggtgtga aaggcttgat
    12241 gaacgtacaa tttgcagtac aaaatgaggt cgtttatgtg ttggaagtta accctcgagc
    12301 cagccgtact gtaccgtttg tcagcaaagc taccggtcgc ccactggcaa aaatcgctgc
    12361 tcgcgtgatg gctggtgaaa cccttgccga cttaaatgca ttagaggaaa ttatcccaag
    12421 caaattcttc gttaaagaag cggtattccc attcatcaaa ttcccgggtg tggataccat
    12481 tctcgggcct gaaatgcgtt ctaccggcga agtgatgggc ataggtaata cctttgctga
    12541 agcgttcttc aaagcacaac tgggtgccgg tgaacgaatt ccaaaagtcg gcaaagtgtt
    12601 tatgtcggtt attgaagagc ataaacctgc tttaatttac attgccaaac gtttccaaga
    12661 acaaggctac ggtttatgtg ccaccttcgg cactgcaaac ttcctacggc aacacggaat
    12721 tgcagtccaa acggtaaaca aagttcgtga agggcgaccg catattgtcg atgcgatcaa
    12781 aaacggcgaa attgcgttgg taatcaacac cgtcagcggc gagcctgaag tgattgccga
    12841 cagccactct atccgccgta ccgccttgca acaacgtgtg cctatttaca ccacccttgc
    12901 aggtgctgat gctatctcct acggcgtaaa acatatcaat gagtttgatg tgtattcagt
    12961 gcaggaatta gaacaaaagg ctaactaaaa taaagctaaa atgacaagcg gtcagatttt
    13021 gcaaattttt tacaaattct gaccgcttgt gtttgtagag gattatttag taaatttata
    13081 tgctaaatca ttccagcgta attcattttt gagttgtggt agctcggtat tttggttgat
    13141 atggataaac tcaataccaa aatattcagc gaacattcgt agcatatcgg catcaatatc
    13201 taaactaaat acactatgat gagcaccgcc ggctagaatc catgcttgag tacctacata
    13261 aaaatttggt tgaagcttcc aaaaagcatg cccaactggt aaatttggca ttggatttgg
    13321 tgaggcgata gcgtctaaat ccgcaacaac cattctaaaa cggtctccca tatctacaac
    13381 ggttgcattc actgcttttc ccgccttact actgaaaatt aagcgaacag gatctgcctt
    13441 accgccaata cctagcggtc gaatggctaa tgttgatttc tctttggcaa tagacggaca
    13501 aacttcaagc atatgagccc ccaataccac ttggttttgt tcatctaaat cataggtgta
    13561 gtcttccata aaggaagaac cgtttggtaa gccataaccc atcactttca cttcacgcac
    13621 aagagctgcg gttttccaac ctccttcacc accaaatccg tagccttgtt ccattaaacg
    13681 ctgaacagcc aagcccggta attgtttaat cccatttaga ttttggaaat tatcagtaaa
    13741 agctttaaat ccaccattat ctaagaatgt ttttaagccg atttcaatac gagcagaata
    13801 tgcgagagat tctcttgctg aaccattttc ttgcaagcta tcctcaacat tatacaagcg
    13861 gtcagatttt gcaaaaaaat gaccgcttgt tgccatttct aaagtgtgat ctacctctca
    13921 aatttacaaa attttttata acatattgat ttaaaatgtt ttttatattt ttcctttaat
    13981 tgactttaat ttgtcttaag agtaacttat aaaacgtgat tttactattt gaaatattga
    14041 ggtattcaag atgactattc gagtttccta tgaagaatta aaagctcaat ttaaacgtgt
    14101 tctgttggct cgcaatgtgc gtgaagagat tgccgaagag tgtgccactg tgtttgccga
    14161 caccactcaa gcgggtgctt attcacacgg ggtaaaccgt ttcccacgct ttattcagca
    14221 gttagagaac ggtgatattg tgccggaagc cgtgccgact aaagtgcttt cactgggggc
    14281 gattgagcag tgggacgctc accaagccat cggtaactta accgcaaaaa aaatgatgga
    14341 cagagcaatg gagcttgcat ctgaaaacgg catcggcgta gtggcgttac gtaatgcaaa
    14401 ccactggatg cgtggcggtt cttacggatg gcaggcggca gagaaaggct atatcgggat
    14461 ctgctggacg aacgcccttg cggtaatgcc gccttggggg gcgaaagagt gccgtatcgg
    14521 gactaacccg ttaatcattg cggtgccgac taacccaatc acgatggtgg atatgtcttg
    14581 ctcaatgtac tcatacggaa tgttggaagt gcatcgcctt gctggtcgtc aaacctttgt
    14641 cgatgctggt tttgatgatg acggcaaccc aacccgtgat ccggcaacgg tcgagaaaaa
    14701 cctccgtcta atgccgatgg gcttctggaa aggttcgggc ttatcgattg tgttagatat
    14761 gatcgccacc ttgctctcta acggtgaatc cactgcggca gtcaccgaag ataaagacga
    14821 tgaatattgc gtgtcgcaag tttatatcgc tattgaagtg gatcgcttaa ttgacggcaa
    14881 aaccaaagac gaaaaactca accgtattat ggaatatgtg aaaaccgcag aacgtgccga
    14941 ccctgatgtg gcagtacgtt taccgggcca cgagttcacc caaattctag ccgataacaa
    15001 agccaacggc attccggtgg atgacaccgt ttgggcgaaa ttacaggcgt tgtaattgca
    15061 aattgaccgg tagggtgggc gtaagcccac gcattagaca caatcataag atgacgtggg
    15121 cttacgccca ccctacaagc ggtcattttt ccgcagaatt ttacaaaacg gaggtatgaa
    15181 tgttttttgg tcatatttca caagttaaag cgaatcgata cccgccggcg atccaaattg
    15241 cgttgaacta tctgaaaaat accgattttg atgcgatgga agcaggggtt tacgaactca
    15301 aaggcagaca aatttatgtg caggtgttgg atttgaacac caaatcgaaa cacgaatttc
    15361 agccggaagt gcatcgcaat tacctcgatg tgcagtatct acaccgaggc aaagagataa
    15421 tggctgcggc ggtggatacc ggcaccaatc cgattgcgat ggaatacaac cctgagcggg
    15481 atattcaata ttatcaatcc gttgccaacg aaaatgaatt tcgctgcgtt gaaggcaatt
    15541 tttgacggca cggaaaccat tcgcaaagtg gtggtaaaaa ttgcgatgag cgaaattgag
    15601 gagcaacgat gaaagcctta gctcaattag tcggaaaact gttagaaatc ttggtggtgg
    15661 tgattttatc cgcaatgtcg attttggttt tcgtcaatgt ggtactacgt tacggtttta
    15721 acagcagcat tagcgtgacc gaagaggtgt ctcgctatat gtttgtttgg ttggcgtttt
    15781 taggggcggt gttggcattt agcgaaaatc aacacgttaa agtcacaatg ctgaccgata
    15841 aattatcgcc aacggctcgt aatatcttaa gcgtagtcac agatttagcg atgttgttct
    15901 gttgctactt aattgtggac ggtagctgga ttcaatttaa cctcaacctg aataactttg
    15961 ccccgatttc aggcttaccg caaggcatca ctttccttgc cagcacagtg gcaggggtat
    16021 taatcggttt attaattatt gcccgcattg tggcaacggt tggcgtgatt gcaaaaggag
    16081 aaaaatagat gactgtggta atttttcttt ccgtcttgct tggctcgatt ttattgggca
    16141 ttccggtagc tttcgccctg ttggtctgcg gtgtggcgtt aatgttgcat ttagatctgt
    16201 tcgatgccca aattttggct caacaaattg tgagcggtgc agacagtttc tcgctaatgg
    16261 caattccgtt cttcattctt gccggtgaaa ttatgaacga gggcggtctc tccaaacgga
    16321 ttatcgacct gccgatgaaa ttagtcggtc ataaacgggg cggtttaggt tttgtagcaa
    16381 ttttagcggc gatgattatg gcaagccttt ccggttcggc ggtggcggat accgcagcgg
    16441 tagtcgcaat gctactgccg atgatgaaaa ccaccggtta tccgattgac cgctctgccg
    16501 gtttaatcgg tacggcaggg attatcgccc caatcattcc gccaagcatt ccgtttatcg
    16561 tatttggtgt ggctagtggc gtgtccatta ccaaactgtt cttagccggt attttcccgg
    16621 gcattatgat ggggatctgc ttggctgccc tttggtggtg gcaggcaaaa cgtttggatt
    16681 taatgacctt ctccaaagcg accaaagaag aactttgcat ttcatttaaa aacagtattt
    16741 gggcgttatt gttgcctgtc attattatcg gtggtttccg ctcgggaatg ttcaccccaa
    16801 ccgaagcggg tgcggtcgca actttctatg ccttgattgt ttcactgttt gtttaccgtg
    16861 aaatgaagtt caaagattta tacaaggtag tgttggcggc agcgaaaacc acggcagtag
    16921 tgatgttctt agtggcagcg gcaaatgtga ccggctggct gattaccgta gcggaattac
    16981 cgatgatgct caccgagctg ttagagccgt taattgaaag cccgaccaca ctcttattgg
    17041 tgattatgtt agcggtgttt attatcggaa tggtgatgga cttaacccca accgtgctga
    17101 ttttaacgcc ggtattaatg ccgttggtgg aagaggcagg cattgacccg gtttacttcg
    17161 gtgtgctgtt tattcttaac acctccatcg gcttgattac accaccggtc ggcaacgtgc
    17221 taaacgtgat taccggcgtg tcgaaactgc cgttcgacca agcggctaag ggcgtaatgc
    17281 cttacctcgt aatgatgatt tgtttactac tgttgttcgt gttcttcccg tcactggtgt
    17341 tagtgccgtt aagctggatg cagtaatggt ttgaaccgaa acaagcggtc gaattgacgc
    17401 aaaaatttgc aaattttttt ggcaaaacag accgcttgca actcaatttt taatcacagg
    17461 agaaccctat gaaattattt aatttaaaaa ccttatttgc cttagtggca ggcgttgcgg
    17521 taatgagcgg ctctgcaatg gcagaaacct cactgcgttt tggttatgaa gccccacgtt
    17581 ccgataccca acacatcgcc gccaaaaaat tcgatgaatt attggcagca aaaaccaaag
    17641 gtgaaattaa attaaaactg tttccggaca gcaccttagg taatgctcaa acgatgatca
    17701 gcggcgtgcg tggcggtact atcgacattg aaatgtccgg ctcgccaaac tttaccggct
    17761 tagagccaaa actaaatgtg attgatattc cgtttatttt caaagatcgt gaacacgttt
    17821 acaaagtatt agacggcgaa gttggtcaag gcttattaaa agatttagaa gcccaaggct
    17881 taaaaggctt agccttctgg gacgttggct tccgtgcttt ctccaactca aaacaccctg
    17941 tgaccaagcc ggaagacatc aaaggcttaa aagtccgcac caaccaaaac ccgatgtaca
    18001 ttcaagcctt caccttacta ggcggcaacc cggtgccaat gccactttct gagctttaca
    18061 ccgcactcga aacccgtgcc gttgatgccc aagaacaccc aatcggcatt ttctggtcgg
    18121 caaaactgtt tgaagtacaa aaacatttaa gtttaaccaa ccacggctac accccgttaa
    18181 tcgtggtgat gaacaaagcg aagtttgacg gcttagctcc tgaattacaa accgcattag
    18241 ttgaagccgc aaaagaagcc ggtcaattcc aacgtgatct caacgtgaaa aacgaaaaag
    18301 agatcatcga aaaattacgc aaacaaggca tcgaagtgat cgaacaagtg gataacgccc
    18361 cgttcaaagc agcgattgaa gcggaagtcc gcaaagcttt cgtggaaaaa cacggcgatg
    18421 aattattgaa aaaagtggat gcgttagcac agtaattgac tttattttag tctaaagctc
    18481 cctccgtttg gggggagttg ttgtatagac tctactatag gagagactat gaaactgttt
    18541 aatttaaaaa ctttagccgc tttcgttgcc ggttttgcac tgttttcaac cgcacaagca
    18601 gaaacctcat tccgctttgc gtatgaagct cctcgttctg atactcaaca tattgcagcg
    18661 aaaaaattta atgatttgct gcaagaaaaa tcccaaaaag ggctgaaatt aagcctcttc
    18721 cctgatagca cgctcggcaa cgcacaaacg gcgattagcg gtgtgcgtgg cggtactatt
    18781 gatattgcaa tgtccagctc ctctaacttt accgggttag aaccaaaact gaatgtgatt
    18841 gatattccgt ttattttcaa agacagagac cacgcctata aagccttaga tggagagatt
    18901 ggtcaaggtt tattaaccgc attagaggct cacggtttga aagggttggc gttttgggaa
    18961 gttggtttcc gagcgttttc caactccaag cacccgatca ccaaaccgga ggatattaaa
    19021 ggcttaaaaa tccgtactaa ccaaaacccg atgtatattc aagccttctc tattttaggt
    19081 gcaaatccgg tgccaatgcc gctttccaag ctttacactg cactggaaac caaagcggtt
    19141 gatgcccaag aacacccaat cggcattttc tggtcggcaa aactctatga agtacaaaaa
    19201 tatttcagct ttactaacca cggttacacc ccgttaattg tggcgattaa caaagcgaaa
    19261 tttgatgcac tgccagccga gcaacaaacc gcattagttg aagcggcaaa agaagccgga
    19321 aaataccaac gccaacttaa cctagaaaat gagcagaaaa ttatcgactc gctcaaaaaa
    19381 gcaggtattg aatttgtgga taacttagat accacaccgt tcaaagatgc cgtatcggct
    19441 gaaacccgca aggcatttat cgagaaaaac ggtgatggct tagttaaagc cattgatgca
    19501 ttggcgaagt aaaaatagag ctacaaagtg ctcggttaaa ctaacctcac acgaatcgtg
    19561 tgaggtacaa gcggtcaaaa tccgcaaaat ttttacacat ctttcctcaa aggaggaaca
    19621 aatggcacag cccattttaa gtatgcagca catcatcaaa cgctttggta gccatacggc
    19681 ggtgaatgat gtcagccttg atatccactc aggcgagatc gttgccttac tcggtgaaaa
    19741 cggtgcaggt aaatcgaccc taatcaaaat ccttgccggt atttatgacc gtgacgaggg
    19801 tgatattctt ttccataacc aaaaaatcca atctgcccac gctattgaga aaggcaacaa
    19861 aaagcccatc gcttttatcc accaagattt aggcctaata gaatggatga cgattgccga
    19921 aaatatggca tttgtaatgg ggttccctcg caaatttggc ttgattgact gggcgaaagt
    19981 gcgagagcag tcgcaaaaag cccttgattt tgtaggcatt aaactctctg ccgacactcg
    20041 agtgtttgat ttaagccgta ccgaaaaagc cttactcgcc attgcccgtg cgattgccgt
    20101 caatgcagaa atcttggttt tagacgaacc tactgcttcc ctacctgcct ctgatgtaga
    20161 gcatcttttc actgtgttaa accgcttacg ttcccaaggt gtgggaatga tttatgtgac
    20221 ccaccgttta gatgaagtga tcgccatttc cgaccgcatt ttggtgatgc gggacggttt
    20281 cccggttgca gaagggcaaa ccaagctcta tgacgtcaaa ggcttggtca aagcgattgt
    20341 aggcgaagag agccgtggca gacagcgggt ggatttacca accgatactc ctgaaatttt
    20401 aagcctgcaa aatgtcgtgg ttggcgacac cggcccggtg aatttccgtc tgcacaaagg
    20461 tgagatgatt gcccttgccg gcttgcgtgg agcagggcag gaagaaatcg gccgcttatt
    20521 atttggggag cgaaccttag acaaaggcga aattcagtta gacaagcggt catattctgc
    20581 taaagatccg caagatgcga tagccaaagg tgtggcattg gttgcgggag accgcacccg
    20641 tgaaagcgtg tttatgtcaa tgactaccag tgagaacctg tttatcaacc cggtactaag
    20701 cggtcattca ccattaaaac gctactcccg ccgtgaagag tggggtgaga gctggtacaa
    20761 attccaacta ttcgatattc gtccgaaaaa tttgtttatt gatgccagtg cgttatccgg
    20821 tggtaatcag cagaaaatcg tgttggcacg ttggatgcac ctcaatacgc ctgttctgat
    20881 tttagaagac ccgactgccg gcgtggatgt aggagcaagg gcagagattt acgacttgct
    20941 caacaaagcc cttgcagaag gggtcgcaat tattgtgatt tccaccgact ttgaagagat
    21001 cgctcatttg tgtaaccgag cattagtctt caaccgaggg gaaattgccg gtgaactact
    21061 gaacgaagag gtgactttcg ccaatttgct ggcgttggca tcggatagtc agtcgaaaaa
    21121 acaataactt actctcgccc gcttgcggga gagagacagc taaaaatagc gtcaggctat
    21181 ttttagcaga gagagggtaa acaagcggtc atttttctta aaaaatattg cgaaccctct
    21241 ccctccgaaa gcctaacggc tttctcctcc ctctcccgca agcgggcgag gggaaaatgc
    21301 agaattttaa cggagtaatt tatggctcaa acaaacatca aatcaaccgc actggaacaa
    21361 ccggtatcta tcgcccgtga cggttttatg gcatggtttt cacaaatgtc cactcgttat
    21421 ggcttactgt ggttatgtgt gttattggtg attattttct cacttaccac cgaatctttc
    21481 gcctcaatgc tgacattaaa tgcgatttta gaaagtaaat cgaaaattgc cctacttgct
    21541 ttggcagcca caactacaat gattgtcggc aaaatcgacc tgaacgtggg tttcggtatt
    21601 gtgttgtggc acattcttgt gattactctg caagtccaat acggcttctc gtggtatatg
    21661 gcgatcttaa tcgtgttagt gattgccgct ctttacggct tgctgaatgg gattttagtt
    21721 gctcttgctg atatcgatag ctttgtggca acacttggct caggcacagt gctttatgcc
    21781 gtagcactct ggcactcggg cggtcgccaa attgtcgggg atttacccga tgaatttatc
    21841 gcactcaaca gcacagaaat tttcggtatc ccgatttctg ctttctatgt gctggcagtg
    21901 gctatcgtaa tgtggttggt gacagaacat accccgaccg gtcgttgtat gtatgcggtt
    21961 ggtggcaacc caacggcagc tcgcctaaat ggtatcaata ttaaaaaata caccattgtg
    22021 ccgtttattg tctctagtgt aatcactgct ttcacaggcg tattgatctc tgctcaacaa
    22081 ggcgttggtc aggcaagtgt cggtatggac tacttactgc ccgcattggt tggggcattc
    22141 ttagggagta ccactattcg cccagggcgt attaacgtat ggggaacagt ggtggggatt
    22201 gccattcttg ccatcggtat ttcaggtatt caacaattcg gtggagcgtt ctgggttgag
    22261 ccactcttta acggtgcaac actgttactt tccatcacta ttgcaggcta tgcccaacgc
    22321 aaacgcttgt taaatcaaaa agctgtacag aaaaaatcga ccaactaaga ggatttgatt
    22381 atgaaaaaag catttcgtac aaccttaact gcaatcgcaa ccttaactgc tattgctttc
    22441 ggaaataatg cgtttgccaa tgacgacccg ttcgtacaag aagcaaaaca gcttgtcgca
    22501 gcagctacgg ctaagcaaga aaaatgggac ggaccgacaa ccggccctca attacaaaaa
    22561 gagaaaactg tgatttttat tgcctctgat atgaaaaacg gtggtgtact tggtgtgatt
    22621 gacggaatga aagaagctgt tggcgtaacg ggctggaagt tagatgtatt agacggtgca
    22681 ggtacggtaa acaaccaact cgccgcactt aaccaagcga ttgcccgcaa accggatgcg
    22741 attgtgattg gtggctggaa cccgaatgtg gcgaaaatcc cactacaaaa agcgactaaa
    22801 aacggcatta aacttgcagc ttggcacgca acaccggagc cgggtgcgat tgataaatac
    22861 ggcattttct acaacgtgac ctctgactca gacgaaattg cacgcttatc ggcaatgctt
    22921 gcggtggcag aatctaacgg taaggcaaaa gcgattattt taaccgactc gctatatgaa
    22981 attgcgttac gcaaagcgaa cgtcatgaaa gaagttatcg aaaaatgtaa agagtgtaag
    23041 gtgttagagt ttatcgacac gccattggcg gatacctcaa gccgtatgcc taacctcact
    23101 ttcagcttac tgcaaaaata tggcgacgat ttagagtatg cgttggcaat taacgatctc
    23161 tactttgact ttatggctcc gtctttacgc accgctggta aagataaacc gtttagcatt
    23221 tccgcaggtg atggctcagt aacggcttat caacgtattc gcaatggtga taaacagttt
    23281 gcaaccgtcc ctgagccact taacttacac ggctggcagt tagtcgatga gctaaaccgt
    23341 gctttcgcta acgaaaaacc gtctggttat atcacaccgg ctcacctagt gactaaagaa
    23401 aatgtggcgt ttgacggtgg tgaaaacaac ctgtatgccc cacaaaacgg ttacaaaggc
    23461 gcttacaaag cgatttgggg cgtgaagtaa tgacgtaggg gcaaataaat atttgcctcg
    23521 aacaagcggt tgttttttgc aaagattttg cgaaatttaa ccgcttgtca taaaaaatag
    23581 agagggtaat acaaatgagc aataaattta tccccaaaat ctccaaccct cgttttaatg
    23641 agctggttgg gaatacgttt gaacttgaag agctttttga taaggcaatc tgggcagaag
    23701 ggccggcgtg gagcaagcca caacaagccc tctattttag tgatgtaaaa ggttgcacaa
    23761 tgtaccgctg gacagagcaa gatggtacac aggttttccg ccagccgtct tatttttcta
    23821 acggcaatgc gtttgatgca aacgacaact tgattacctg tgaacacggc aatcgaggta
    23881 tcagtttaac cacgccaagc ggtgaatatc gttttttggt cggtcaatta gacggaaaac
    23941 gactgaactc acccaatgat gtggtggtaa aatcagacgg catcatttgg ttcactgatc
    24001 caccttacgg tattttgtcg gataacgaag gcaaacagtc gccaagcgaa attatcggtt
    24061 gttatattta ctgctatgat ccgaaaaccg acaagctgaa tattgcaact ttcaacacga
    24121 tgcgaccaaa cggcttggcc ttctcgtcag acgaaaaaca actctttgtg gcagatatgt
    24181 cgagcgtgga atttgacgaa gatggcttac accacttagt cgtatttgat gtggacggta
    24241 ataaactaaa aaatcgccga gatgtggcgg aaattagtcc cggcattccg gacggcttcc
    24301 gaattaaaca aaacggcgta attttctgct cttgtgaaga gggaattatt gctcttttac
    24361 ctgacggcac ggagctggga cgatttgtgc tgggtaagct aacctcaaat tgtagctttg
    24421 gcgatgatga acaaacactg tttattactt gttcgaatag cgtttatcgt ttaacaatta
    24481 aatagcagaa tgcattaagt gcgtctgttg tagcattaca agcggtttct ttttcaaaat
    24541 tttttacaaa caaataatgg ataacaaaat gaactacaca ctcggcattg attgcggtgg
    24601 gacttttatc aaagccgctc tttttgatac acaaggtaat attcaagccc ttcatcgtga
    24661 aaacgtttcg gtaatcagtg aacaggcagg ttatgcagag cgtgatatgt cacaactctg
    24721 ggctatttgt gcggaagtag tgcgttcaac cattgaaaaa agtggggtaa acccagcgga
    24781 tattaaagca gtagggattt ccgctcaagg caaaggggcg tttttactgg ataagcagaa
    24841 tcgaccgttg gggcgtgcga ttttatcttc cgaccaacgt tcccttgaga ttgttaaaca
    24901 atggcaggct gaaggcattc cgcaacaact ttacccgatt acccgccaaa ctctttggac
    24961 aggacaccct gtgtcgattt tgaagtgggt gcagcaaaat gaaccggagc gttatgcaca
    25021 aatcggggcg gtgttgatgt cgcacgacta tttgcgtttt tgcttaaccg gtgagttgca
    25081 ttgcgaagag accaacattt ccgaaagcaa tctttacaat atggaaaaag gcgaatacga
    25141 ccaacagtta gccgatttgt tgggaatgcc ggatgtgttg gagaaattac caccagtgat
    25201 tgaaccgaat aaaatttcgg gatatgtgac tgaaaatgcc gccaaattaa ccggtttagc
    25261 ggtgggtacg ccgatagtcg gtggcttgtt tgatgtggtt tctaccgcac gttgtgccaa
    25321 tttagatgac gaaaccaaac tgaatgcagt gctgggaacg tggtcggtgg tgagcggcat
    25381 taccgatcat attgatgcaa gccaatcatt accttttgtt tatgggcgtt atgccgaggc
    25441 agggaaattt atcgtccacg aagcaagccc gacttctgcc ggtaatttag agtggtttgt
    25501 gaatcagtgg aaactcgatt atgtgaaaat caaccaagct gttgcccaat taccgccggc
    25561 ggcaagctcg gtgctgtttg tgccgtttct gtatggctca aatgcaggct taggaatgca
    25621 agccggtttc tatggtatgc aagcccacca tacccaagcc catctcttgc aggcaattta
    25681 cgaaggagtg ttgtttagct tgatgagcca tttaaaccgt atgtttatcc gctttccaaa
    25741 ggctgacgtg ctgcgagtta ccggcggacc ggtgaaatct aaagtttgga tgcaaatgtt
    25801 ggccgattta accggaatgc ggcttgaaat accacaaatg gaagaaaccg gctgcttggg
    25861 tgcggcatta atggcaatgc aaggggttgg gctggatata agccaagttc aagccctaaa
    25921 taatgaaatg caggtgtttg agccaaatcc ggaaaattat gcggcttatc agacgaaata
    25981 tcagcgttac caaaaattaa ctgaagcatt aaatacaatg atttaacctg aatttatgct
    26041 tttacaagcg gtaatatttg gttacttttt tgcaaaaatt actgcttttt tgtttattta
    26101 atttatgaat ttaattaaat aatctttaaa ttaaagg
//
LOCUS       DANLZD010000017        25594 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.017, whole genome shotgun sequence.
ACCESSION   DANLZD010000017 DANLZD010000000
VERSION     DANLZD010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 25594)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25594)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25594
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.017"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            143..889
                     /locus_tag="PXE26_000503"
     CDS             143..889
                     /locus_tag="PXE26_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL5593117.1"
                     /translation="MQLRHKQIMEYIQQFDEANVQELAEHCGVSIETIRRDLNKLDKD
                     GLLHRTHGGAVSHKKRDIGRSFTTRQRLNSEAKRSIAENVLEYLQPESVIALDASSTS
                     WNVAQRIPNIPCTVVSSSMRIIYSLSHKPHIKTIATGGIYSEKYDAFYGPLSEQLLTR
                     LKIDLAILSCTGIADGAIWESNEINISLKRKLIANSKQVFLLADHSKFERKDLFRIED
                     LSCIDKLFINQPPPDFLKNYCLAHQIEIII"
     gene            1085..2848
                     /gene="fucI"
                     /locus_tag="PXE26_000504"
     CDS             1085..2848
                     /gene="fucI"
                     /locus_tag="PXE26_000504"
                     /EC_number="5.3.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose isomerase"
                     /protein_id="HDL5593118.1"
                     /translation="MTTLKSTPVKIGIRPTIDGRRLGVRESLEDQTMNMAKAVAQLIQ
                     SEVRHPNGDFVECVIADSTIGGVAEAAACAEKFKRENVGAVITVTPCWCYGSETIDMD
                     PHMPKAIWGFNGTERPGAVYLAAALAGHSQLGLPAFSIYGTEVQEADDQSIPDDVREK
                     LLHFARAGLAVATLRGKSYLSIGSVSMGIAGSIVNQQFFQEYLGMRNEYVDMTEIKRR
                     LDRHIYDAEEFKLAMSWVKTYCKEGIDVNAPENQRSPEEREKLWEDVVKMTIIARDLM
                     VGNPRLAELGYSEEALGHNAIAAGFQGQRQWTDHLPNGDFMEATLNSTYDWNGVRAPY
                     IMATENDSLNGVNMLFGNLLTGQAQIFADVRTYWSEDSVERVTGWRPESGFIHLINSG
                     SAALDGTGQHTDRAGKPTIKPAWEVTEEDGKRCLENTCWCPAVHEYFRGGLSSQFLTK
                     GGMPFTMHRINLIKGIGPVLQIAEGWSIDLPENVHDILNKRANETWPTTWFVPRLTGK
                     GAFTDVYSVMANWGANHCVATFGHVGADLITLASMLRIPVCVHNVEDKDVFRPSAWNG
                     FGQDKEGQDYRACANFGPLYK"
     gene            3042..4475
                     /gene="fucK"
                     /locus_tag="PXE26_000505"
     CDS             3042..4475
                     /gene="fucK"
                     /locus_tag="PXE26_000505"
                     /EC_number="2.7.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculokinase"
                     /protein_id="HDL5593119.1"
                     /translation="MPISLIFDCGATNLRTIAINQAGEIVAAHHLPNNTQPDVESPEF
                     HIWDIEEIWSKLMTCAKQTLSQLSEQQRQEIVGISVTTFGVDGALFDKNGKQLYPIIS
                     WKCPRTLPIMENLANYLDVEALYQRNGVGHYSFNTLFKLLWLKENKPEIYQQAESFLF
                     ISSILTYLLTGVQTTDRTMAGTSMMTNIENDSWDKTVLDLLGLTENHFPPMKSAGEVV
                     GTLKGEISQELGLSGQIPVISCGHDTQFAIFGSGAGYNQPVLSSGTWEILMVRTPKAK
                     PQWQFVQNGLTIEFDSQSGYFNPGVQWVASGVMEWFGKRFFSDIANTEHYYRTMIEEA
                     AEVPAGSNGVKLVGNFDGTTAKTGSIIGLSMHITRGEIYRAGLEYMAHRLKEGLDVLQ
                     EVGHFNAESLICVGGGSKNALWNQIRADVLNRPIDVVDFPESTVLGAAMFTFTGAGVF
                     ENPNAAQQAMKPNVKRVEPSSNSQFYK"
     gene            4550..4981
                     /gene="fucU"
                     /locus_tag="PXE26_000506"
     CDS             4550..4981
                     /gene="fucU"
                     /locus_tag="PXE26_000506"
                     /EC_number="5.1.3.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose mutarotase"
                     /protein_id="HDL5593120.1"
                     /translation="MLKGIHPAISPDLLKVLAEMGHGDELVLSDAHFPAHSIHQNVIR
                     ADGLSVATLLEGISALFEFDQYVEAPLAMMQAVKGDTLDPSVEERYLNAIKKVNGTAP
                     KIERVERFAFYDRAKNAYAVVITGELAKYGNIIIKKGVTPV"
     gene            5041..5694
                     /locus_tag="PXE26_000507"
     CDS             5041..5694
                     /locus_tag="PXE26_000507"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HDL5593121.1"
                     /translation="MDRKILARQIIDTCLEMTRIGLNQGTAGNVSVRYKDGMLITPTG
                     TPYEQMTEDSIVFVDGNGKHEEGKLPSSEWQFHLAVYEARPELNAVVHNHAKNCAAVS
                     ILGEPIPAIHYMIACTGTNHIPCVPYAPFGTHQLADYVREGIKHSKAILLAHHGLITA
                     DKTLEKALGIAHEVEVIAEWYLKLLATGKPIPTLNKEQMDIVLGKFKSYGSWVESEQ"
     gene            5756..7285
                     /locus_tag="PXE26_000508"
     CDS             5756..7285
                     /locus_tag="PXE26_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5593122.1"
                     /translation="MQNEVILTMKNISKSFAGVNALKGVELTLRKGEVHALMGENGAG
                     KSTLMKCLLGVYQADEGEIIYKGQPVRFESVLEAQKAGISMIFQELNLIPHLTVAENI
                     FFAREPLKHGLVDKDKMVEESAKLLNFFEIDVDPNDEVRMLSVAKQQMVEIAKALSFD
                     VEVLIMDEPTSALTEKEIDKLFELVDRLRAKGVSIVYISHRMEELKRICNHITIFRDG
                     TYVSNHKFNEITMDEIITKMVGRSLDNHFPPKTAVVTNDIILSIMNAERKGVFEPLNF
                     DLRKGEILGITGLVGAKRTELARAIFGADPLDSGEIFVHENKVSIKDPSDAIKAGIAY
                     LSEDRKLNGVAVRMSIRENITMASMDKVANQIGVISYDEEEKASKTFIDKMEIKTPTI
                     EQKVQNLSGGNQQKVVIGKWLFREAKVMIFDEPTRGIDVGAKYAIYQLLDELAANGVG
                     VIVISSELPEVLGVSDRIIVMREGRMTGMLETKKTNQEEIMHYATGVKNMFAREYGVE
                     K"
     gene            7282..8280
                     /locus_tag="PXE26_000509"
     CDS             7282..8280
                     /locus_tag="PXE26_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5593123.1"
                     /translation="MNEKQKEMLRKMAALAGLVLLIIFFSVTNEYFFTSNNIMTVGLQ
                     TSTIALIGIGATCVILTGGIDLSTGSVVALSGVAAAMIVNAGVPVPLGMILGILVGGI
                     CGLINGILVTRMKLPPFIATLGMMMVARGLALYVTNAAPVSGMPESFANLGNGALFKI
                     VEEGANGLPKVVFAGIPYPVIIMIFITVLFTFALSKLKVGRYLYAIGSNEEAARLSGI
                     KTNIVKIYAYVASGLLSGLTGVILASRLVTAQPNGGVSYELDAIASAVVGGTSLMGGV
                     GTIPGTLIGSFIIGVLRNGLNMNGVSSFVQMIVIGLVIIVAVSLDQLRQSKKAGKK"
     gene            8304..9251
                     /locus_tag="PXE26_000510"
     CDS             8304..9251
                     /locus_tag="PXE26_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5593124.1"
                     /translation="MKKSALFTATLFGLSTLFAGSAMAKSDEIAVIVKSANSTFWQNV
                     RKGAETAGKDIGGQYKVTFQGPEAETAIDAQVNMVDNAVNRGVAGIVLAASDPVALVP
                     AVKKAYESGIPVVLIDSGINSDGKYYQSFLATDNRAAGKLAAEKLLAKVKGGKVAVMS
                     FTQGAASAIERTGGFIDEIKAKADYKLVGPYYSDSDMTKALNQTEDVLGSNPDLAAIF
                     GANEPTAVGMARAVKQKGFAGKIVAVGFDGNSDLQNFVRDGTLDGIVVQSSYQMGYKG
                     VDTIGKLIKGEKVEKVIDTGVVYVTKENIDSEEAKGVLY"
     gene            9307..9558
                     /locus_tag="PXE26_000511"
     CDS             9307..9558
                     /locus_tag="PXE26_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIB"
                     /protein_id="HDL5593125.1"
                     /translation="MSNTLTDKALVVIAALGGRENIVDVYACITRLRVEVKNTDIVEW
                     DKIKSVGALGVVTSGSVIQSIFGSDAEAYRDEIKRILNI"
     gene            9687..10838
                     /gene="fucO"
                     /locus_tag="PXE26_000512"
     CDS             9687..10838
                     /gene="fucO"
                     /locus_tag="PXE26_000512"
                     /EC_number="1.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactaldehyde reductase"
                     /protein_id="HDL5593126.1"
                     /translation="MANRLILNETSYHGKGAIQNIVHEVTSRSFKKALVVTDKDLIKF
                     NVAQKVTALLDAAGLPYEIFDEVKANPAVDVIKAGVAKFKASSADYLIAIGGGSPIDS
                     AKAIGIIINNPEFSDVLSLEGVAPTHQKCVPIIAIPTTAGTAAEVTINYVITDEAKKR
                     KFVCVDVHDVPAVALVDPDMMESMPKSLAAATGMDALTHAIEGYITKAAWELTDALHL
                     KAIELIGRSLRGAVEKNPKDVEAMALGQYVAGMGFSNVGLGAVHSMAHPLSAYYDTPH
                     GIANAVLLPYVMEFNKNYTGEKYREIARAMGVKGVDEMSQEEYRNAAIAAVQQLSQDV
                     GIPPKLHQIGVKEADLAALSVDAFNDVCTGGNPRDCTAEELLEVYRIAY"
     gene            11105..12550
                     /gene="aldA"
                     /locus_tag="PXE26_000513"
     CDS             11105..12550
                     /gene="aldA"
                     /locus_tag="PXE26_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HDL5593127.1"
                     /translation="MVKQHKMYINGEFVPALDGRTLAVYNPATEKAISEVPRGGADDA
                     KIAIDAAEAAQEAWERLPAIERGKYLRQIAVGIRERADEIARTISEEMGKTLSLATVE
                     VHFTADYLDYMAEWARRYEGEIIQSDRPNEHIFLYKKAIGVTTGILPWNFPFFLIARK
                     AAPALVTGNTIVIKPSEDAPNNAILFSEIVHQVGLPKGVFNVVTGYGNEVGPELSGNE
                     KIGMVSFTGSQFAGQKVMEAASKNIIKVNLELGGKAPAIVLDDADLELAATAVVNSRI
                     INSGQVCNCAERIYVQSSIKEQFVQKLVEKMQAVKYGNPLEQQDIDMGPMVNEKGLHK
                     VQEMVTHALHQGGNLVLGGNVVEGTGYYFEPTIIDNVDNSMDIMRHEIFGPVIPVATF
                     DTIDEAIRLANDCEYGLTSSVYTQNINKAMKVISRLKFGETYVNRENFEAMQGYHAGW
                     RKSGIGGADGKHGLEEYLQTQVVYLQFDDKV"
     gene            12806..13453
                     /locus_tag="PXE26_000514"
     CDS             12806..13453
                     /locus_tag="PXE26_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
                     /protein_id="HDL5593128.1"
                     /translation="MSIFQQTNPNRRRYGLAVFIGIIAGIISAFVKWGAEHPFPPRSP
                     IDLFTAACPQPVLDAMNAAADQVAAKTIALQECSRAFLNPPHVFLRDYIGIDPTEAAF
                     TFADHAFNWIGVTHMIFSLVFAIGYCIVAEIFPKIKFWQGIGAGIIANICVHYITFPA
                     LGLTPPVAEWPLYEHISELVGHIFWFWTIEVIRRDLRNRITREPDAEVPLDQPFR"
     gene            complement(13586..14962)
                     /gene="trkA"
                     /locus_tag="PXE26_000515"
     CDS             complement(13586..14962)
                     /gene="trkA"
                     /locus_tag="PXE26_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HDL5593129.1"
                     /translation="MKVIILGAGQVGSTLAENLVSEDNDIVLVDNDPTRLDKLKDKHD
                     LQVIRGEYASPQTLRDAGAGDADLLVAVTNSDEVNMIACQIAYTLFNVPTKIARIRSA
                     DYVRERERLFNDDVLPIDHIIAPEILVKEDILRLIHYPGALQITHFADELVSIVNVKA
                     YYGGPLVGYPISALRDHLPHIDARVVAIFRQDKAIVPQGSTIIEAGDEVFFICATQHI
                     RAVMSELQRLDRPHKRIMIVGGGSIGSSLARDLEDQYRVKIIERNPVRAEKLAEKLSK
                     TMVLTGDASDEELLFEEHIENIDLFLAVTSDDEANIMSALLAKRLGAKKVIILVQRPA
                     YLHLIQGGTIDIAISPQQATISALASYVRKGDILQVSSLKLGVAGAVEIIAHGDATTS
                     KVVGRQIRELKLPQGAIVGAVVRGEEVIIAHKSTMIAENDRVIIFVNDKKQIDEIEKL
                     FQLGVFFL"
     gene            complement(14962..16293)
                     /gene="rsmB"
                     /locus_tag="PXE26_000516"
     CDS             complement(14962..16293)
                     /gene="rsmB"
                     /locus_tag="PXE26_000516"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HDL5593130.1"
                     /translation="MKKQSFKALSSRAISATIILQVLDQGKSLSTLIPDAQKQLEPKD
                     LPLVQEITFGVCRVLPRLESIIKLLVEKPLKGKTRLVHCLLLVGLYQLLYMRVPAHAA
                     VDEVVNATKTLKLDSFRALTNGVLRRFLREQEEILAKVDKHWQTLHPEWLVNKLKKAY
                     PNWREIVEANNQRPPMWIRVNQQHIKTNDYAALISELVEPEFAKNSENPTACVPKCAL
                     LLERAVNVNQLPHFEQGWATVQDAHAQWSAELLGAENGETVLDACAAPGGKTTHILEK
                     APKAKVMALDIEESRLSRVRENLVRLGQIAQVICGDASKPEEWLEEGVLFDRILLDAP
                     CSATGVIRRHPDIKWLRKEGDIAELATLQGEILKALWQRLKPNGILLYATCSVLPQEN
                     SEQIQRFLQDTPNAKQLEIDFNGEKVLEKQFFPQPNGGDGFFYAKLQKVAE"
     gene            complement(16345..16770)
                     /locus_tag="PXE26_000517"
     CDS             complement(16345..16770)
                     /locus_tag="PXE26_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDL5593131.1"
                     /translation="MYNKLLIAIDLADLKSAKYVVDTALQMTAKNPNAVYRVVSIIEP
                     VDNSLISAFLPKNFDKEVVAEANQKLHEFTKNHFPEGSKVQHIVAYGTIYEEICRIAD
                     EKSVDLIMMLASSKPNAKGLSSNTVKVARNTTKPILVLR"
     gene            complement(16863..19511)
                     /locus_tag="PXE26_000518"
     CDS             complement(16863..19511)
                     /locus_tag="PXE26_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter permease"
                     /protein_id="HDL5593132.1"
                     /translation="MSVESKVDYDDLQDMVASNDSGGRTPSGLAKKAIVYVAILWSVF
                     QIYYASPLPFVFQEWLTHAGINLNVVVDDTKARSIHLAFAMFLAFLSYPAFASSPKHH
                     IPKIDWVFAIVGAGLALYYIFFYEGLVKRFGAPNTQDIIAGCLGILLVLEATRRSLGL
                     PLVIIAIVFLIYNFFGQYFPADWIVSHRSGSLSQIINQQWITTEGVFGVALGVSTKYV
                     FLFVLFGALLDKAGAGNYFIKTAFAYLGHLRGGPAKAAVVSSALTGLISGSSIANVVT
                     TGTFTIPMMKRVGFTKEKAGAVEVASSVNGQIMPPVMGAAAFLMIEYVNMPYSQLITH
                     AFLPALISYIALVYIVHLEACKMNLQGLPRAEEPSPILVFLLRTVASILVIVGLAIGV
                     YYGLGWIRDVAEDYAFMIVCAFLGLWYLLAIRRVASYPDLEADDPNSEIVSLPKRKPT
                     VNAGLHYLIPVVVLLWCLMVEMLSPGLSAFWGTITLIFIQLTQRPLLNFFRKESVTKE
                     IIKQGVRDVVDSLEAGGRNMTGIALATATAGIIVGVVALTGFGVQLSSVIELLSMGNI
                     VLMLILVAVFSLILGMGLPTTANYIVVSSLMATVIMEVGRQNGLIVPLIAVHLFVFYF
                     GIMADVTPPVGLASFAAAAISGGSPINTGMVAFKYSLRTVILPFLFIFNTDLLLIDLR
                     YPGHGWVVFITATVGVLAFTSATMQYIVTKNKWWETALLVVAAFALFRPGFFMDRIYP
                     SERHIEPVQFEEQLLASKVGQNVTLKVEGLNPYGKEIEFYAQLPVPEGATGEERLKNL
                     GLTLIQTDEKIKVDGVETPKVVIDMVEMDSPAAKAGLNWDQTIHYIAVPQDAPSKDWI
                     FIPALLLVFGIVANQRRRVKKQCVIA"
     gene            complement(19713..20675)
                     /locus_tag="PXE26_000519"
     CDS             complement(19713..20675)
                     /locus_tag="PXE26_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HDL5593133.1"
                     /translation="MKKLVKLSFLASLVMGTASVQAAETFVTIGTGGQTGVYYVVGQS
                     ICQLVNRDSAKTGLKCNAPSTGASVANLNAIAAKEMDMGIAQSDWQYHAYNGSSSFEG
                     KKNDKIRAIFSLHPEPFTVMARTDSGIKSFDDLKAKRVNVGDPGSGTRATMNVILAAK
                     GWTDKDFKVASELKPAEMASVMCDNNLDAITYNVGHPNGALKEAAASCDAKLVPVTGP
                     EIDKLVADHSYYAKATIPGGLYKGSDEPTETFGVYATLVTSADVDADKVYNVTKAVFD
                     NFDRFKRLHPAFEHLKQEEMIKNALSAPLHEGAIRYYKEKGWIK"
     gene            complement(20859..22706)
                     /gene="selB"
                     /locus_tag="PXE26_000520"
     CDS             complement(20859..22706)
                     /gene="selB"
                     /locus_tag="PXE26_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HDL5593134.1"
                     /translation="MIICTAGHVDHGKTSLLQALTGTNTAHLPEEQKRGLTIDLGYAY
                     LPIENDILGFIDVPGHQRFLSNMLAGLGGIQHALLVISAEEGIKPQTEEHLDILHLLN
                     FQHIMIVITKADRAEETQISHLIEQVKTSYPFLAEAKTFVTSAKTQQGIEELKAHLIQ
                     LNQQHTQTHKPFRYAIDRVFNVKGAGLVVTGTTVAGKVSVGSELFLSNGKKVRVKAIH
                     AQNTPSETGVAGQRLALNIANVEKEEIKRGDWITELEPKFATDRITVQLTANQAFKEN
                     SIVHLYHFASHITGKLNLLEGQQAVKNQQFFAEVILDEPLHIAVGDKLIIRSGDDSLT
                     LAGAEVLEIHSPKRHKRTEARLALVKNLAKTTACNDFATRLDLYLQNRAMDLSLLLWA
                     EQCFAEDIAKLGFDVSSKWLFNSDFKAQAQQRVLEKMAEYHLQHQDQIGVTKARLYRI
                     ALLDLPENLANQFIEDLVEQKALVNSRGWLHLPEHRIELNADELQIWQQIRPLFEATN
                     QALWVRDIASQLSIDETQMRNLLYKVGKLGYLIPIVKDRFLLSEQIGQFATLIKDFIA
                     QNGSISVNQLRDELQYGRKLTVQLIEYFDRSGFLRRKGDVHLLRDSETF"
     gene            complement(22716..23012)
                     /locus_tag="PXE26_000521"
     CDS             complement(22716..23012)
                     /locus_tag="PXE26_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5593135.1"
                     /translation="MMKFDYNIVWLQKAEIKLFYQADYILQQSQNPIIAEQFYDAIKS
                     EVDKLSFTADVYRLRKKKEIPILNGKYQVKFLIGQENVYIVDFKSARQNSYSFL"
     gene            complement(23009..23185)
                     /locus_tag="PXE26_000522"
     CDS             complement(23009..23185)
                     /locus_tag="PXE26_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593136.1"
                     /translation="MELILAQDLAKLRTDKPQSFYTNDELDLLHQLENGLIETKSHAQ
                     VMEDLRKKLGITEK"
     gene            complement(23254..23886)
                     /gene="pdxH"
                     /locus_tag="PXE26_000523"
     CDS             complement(23254..23886)
                     /gene="pdxH"
                     /locus_tag="PXE26_000523"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005575912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HDL5593137.1"
                     /translation="MDLHHIREDYTKKVLSIRDCHSNPITQFEQWLSEAINAKVNEPT
                     AMNIATVAANGRPSSRMVLLKEVNSQGFVFFTNYQSRKGWEIADNPFGCLTFFWAELQ
                     RQVRIEGKIAKIPEAESDAYFDSRPYTSRLGAWASEQSQPIENYKALLLKSAQFALKY
                     PLSVPRPPHWGGYILIPDSIELWQGRSSRLHDRIHYWLENNEWKKERLSP"
     gene            complement(23944..25326)
                     /locus_tag="PXE26_000524"
     CDS             complement(23944..25326)
                     /locus_tag="PXE26_000524"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HDL5593138.1"
                     /translation="MQQLFRQIPSLDLLLKKPQAVELCQKFAYSSVAEQARSLLTQAR
                     QFISQQQALPDFIADENLFFIRLEQKVQALSEVKIRSVFNLTGTVLHTNLGRGLWSEK
                     AIQAATNAMRNNVALEFDIEAGKRSHRDNYISELLQILTGAEAACIVNNNAAAVLLML
                     ATFAQGKEVIVSRGELVEIGGAFRIPDIMAQAGCKLVEVGTTNRTHLKDYRNAITENT
                     AFLMKVHTSNYHIEGFTSSVSEEELVALGKEFNLPVITDLGSGSLTDMQALNLPAEPK
                     VQQKVAAGVDLVSFSGDKLLGGPQAGIIVGSQAMISQLQQHPLKRVLRCDKVILSALE
                     ATLRHYLFPEQLTDNLPTLHLLTQPLETLQHKAERLKQALHKRLNSAYILQIELSLAQ
                     IGSGALPTETLPSVAVTISAEKQSDLIALEQQFKTYPSPIIGRFAQQKFWLDLRSVAE
                     FDKLIEMLEY"
     gene            25394..25488
                     /locus_tag="PXE26_000525"
     tRNA            25394..25488
                     /locus_tag="PXE26_000525"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:25428..25430,aa:Sec,seq:tca)
BASE COUNT         7458 a         5573 c         5409 g         7154 t
ORIGIN      
        1 attacaaatt ttacaaaaag ttccctaaat ttaaccgctt gcaacacaaa atgtgatcgc
       61 cttctaaaaa tcaaatttgc ttgctcgaca gtaacgctac aagcggttaa atttggagaa
      121 aaatttacaa aaaggataga ttatgcagct gcgacacaaa cagataatgg aatatataca
      181 acagtttgat gaagctaacg ttcaagaatt ggcggaacat tgtggggttt cgattgaaac
      241 tatccgccga gatttaaata agctagataa agatggatta ttacatcgca ctcacggtgg
      301 agctgtgagc cataaaaagc gagatattgg tcgctcattt accacccgac aacggctgaa
      361 cagtgaggcg aaacgcagta tcgcagaaaa tgtgttggaa tatttacaac cagaatcggt
      421 gattgcttta gatgccagct caacctcttg gaatgtggca cagcgtattc caaatattcc
      481 ttgcaccgtt gtcagcagtt caatgcggat tatctacagc ctttcacaca aaccgcacat
      541 taaaacgatt gccaccggtg gtatttattc cgaaaaatac gatgccttct atggtccatt
      601 atccgagcag ttactgaccc gtttaaaaat tgatcttgcc attctttctt gtacaggcat
      661 tgccgatggg gcgatttggg aatcaaatga aattaatatt tcccttaaac gtaaattaat
      721 tgcgaacagt aaacaggttt ttttattagc cgatcacagt aaatttgagc gtaaagactt
      781 gtttcgtatc gaagatttat cttgcattga taaattattt atcaaccaac ccccaccgga
      841 ctttctcaaa aattattgct tagcacatca aattgaaatc attatttagt gatttctgcc
      901 cgattttatt cagaaataaa acaaatcggg cattcttttt tcactcattt ttaccaaaat
      961 cccccatttt ttgtgatcgc actcacaaaa tttaaactaa attcgcattt ttcttcataa
     1021 ctcatattgc gtatgcataa taaattcaat cgcaaatttt tttaaccaat cgggagaact
     1081 atttatgaca acgttgaaat ctacccctgt aaaaattggt atccgcccaa ccattgacgg
     1141 tcgccgttta ggagtgcgtg aatcacttga agatcaaaca atgaatatgg caaaagccgt
     1201 tgcacaatta attcaatctg aagtccgcca cccaaatggt gatttcgttg aatgtgtgat
     1261 tgctgattcc accatcggtg gtgttgccga agctgcggct tgtgcagaaa aattcaaacg
     1321 tgaaaatgtc ggagcggtga ttaccgtaac cccttgctgg tgctacggtt ctgaaaccat
     1381 tgatatggac ccacatatgc cgaaagccat ttggggcttt aacggaacag aacgcccagg
     1441 tgcagtttat ttagctgctg ctttagcagg tcatagccaa ttaggtttac cggcattctc
     1501 catttatggc acagaagtac aagaagctga cgatcaatct attccagacg atgtgcgtga
     1561 aaaattactc cactttgccc gtgccggctt agcagtggca accttacgag gaaaatcata
     1621 tttatctatc ggctctgttt caatgggtat tgccggttct atcgtaaacc aacaattctt
     1681 ccaagaatat ttgggtatgc gtaacgaata tgtggatatg accgaaatta aacgccgttt
     1741 agatcgccat atttacgatg ccgaagaatt taaattagca atgagctggg tgaaaaccta
     1801 ttgcaaagaa ggtattgatg tcaacgcacc ggaaaatcaa cgcagcccgg aagagcgtga
     1861 aaaactctgg gaagacgtgg tgaaaatgac cattattgcc cgtgatttaa tggtgggtaa
     1921 tcctcgctta gcagagctag gctatagtga agaagcctta gggcataatg cgattgctgc
     1981 cggtttccaa gggcaacgcc aatggacaga ccatttgcca aacggcgatt ttatggaagc
     2041 taccttgaat tcgacctatg actggaacgg cgttcgcgca ccatacatta tggcaactga
     2101 aaacgacagc ttaaatggcg tgaatatgtt gttcggtaac ttattaaccg gtcaggcaca
     2161 aatctttgcc gatgtgcgga catactggag cgaagactcg gtagaacgtg tcaccggctg
     2221 gcgtccggaa agcggtttta tccacttaat caactccggc tctgcggcgt tagacggaac
     2281 aggtcagcat accgatagag caggcaaacc aactattaaa ccggcttggg aagtgactga
     2341 agaagacggt aaacgttgtt tagaaaacac ctgttggtgt ccggcagttc acgaatattt
     2401 ccgtggtggt ttatcttccc aattcttaac caaaggtgga atgccgttta cgatgcaccg
     2461 tatcaacctg atcaaaggta tcgggccggt tttacaaatt gccgaaggtt ggtctatcga
     2521 cttgccggaa aatgtacacg acattttaaa caaacgcgcc aatgaaacct ggccgaccac
     2581 ttggttcgta cctcgcttaa ccggaaaagg cgcatttacc gatgtgtata gcgtaatggc
     2641 gaactggggt gcaaaccact gtgtggcaac cttcggacac gttggggcag acttaattac
     2701 cctcgcctca atgctccgca ttccggtttg tgtgcacaat gtggaagata aagacgtatt
     2761 ccgcccaagt gcgtggaacg gtttcggtca agacaaagaa ggtcaagact accgtgcttg
     2821 tgctaacttc ggaccattat ataaataata cacaatcacc ctctcccctt gtgggagagg
     2881 gacagccaag caattcgttc agaattgaat ggcagggaga gggctacaag cggtcgcttt
     2941 tctctcaaaa tttacaaatc cctctctctg attaaattgc taaacgcaat ttaatctatc
     3001 tctctaaaag ggagatatta ggataagtaa aggagataac aatgccaatt tctcttattt
     3061 tcgactgtgg tgccaccaac ctccgtacga ttgcgattaa tcaagcgggt gaaattgtgg
     3121 cagcccatca tctaccgaat aacacacaac cagatgtgga aagcccagaa tttcatattt
     3181 gggatattga agagatctgg tcgaaattaa tgacctgtgc caaacagacg ctttctcaac
     3241 tttcagaaca acaacggcaa gagattgttg ggatttcagt aaccaccttt ggcgtggacg
     3301 gtgcattatt tgacaaaaac ggcaagcagc tttatccgat catttcttgg aaatgcccga
     3361 gaaccctacc gattatggaa aaccttgcca attatcttga tgttgaggcg ttatatcaac
     3421 gtaatggcgt tggacattat agtttcaaca ccttattcaa attattgtgg ttaaaagaga
     3481 acaaaccaga aatttatcaa caagctgaga gtttcttatt catctcatct attttgactt
     3541 accttcttac aggcgtgcaa acaaccgacc gcacaatggc gggaacgtca atgatgacaa
     3601 acatcgaaaa cgattcgtgg gataaaacag ttttagattt attaggctta accgaaaacc
     3661 attttcctcc aatgaaaagt gcaggagaag ttgtgggaac attaaaagga gaaatttccc
     3721 aagagttagg tttaagcggt caaattccag taatttcttg cggacacgat actcaatttg
     3781 ccatttttgg ctcaggagct ggctataacc aacctgtgtt aagttcaggc acttgggaaa
     3841 ttttaatggt tcgtacccca aaagcaaaac cacaatggca attcgttcaa aacggcttaa
     3901 ccattgagtt tgatagccaa tctggttatt tcaacccagg tgtgcagtgg gtagcttcag
     3961 gtgtgatgga gtggtttggc aaacgtttct tctctgatat agccaatact gaacattact
     4021 accgcacaat gattgaagaa gcggcagaag tgcctgctgg ctcaaacggt gtgaaattag
     4081 tcggcaattt tgatggcaca acagctaaaa caggttcaat tatcggctta tctatgcaca
     4141 tcactcgtgg cgaaatttac cgtgcaggct tggaatatat ggctcatcgt ctaaaagaag
     4201 ggttagatgt attacaagaa gtcggtcatt ttaatgctga gagtttgatt tgtgtgggag
     4261 gtggttctaa aaacgcttta tggaatcaaa ttcgagccga tgtcttaaat agaccgattg
     4321 atgtagtgga tttccctgaa agtaccgtat taggcgcggc aatgtttact tttacaggtg
     4381 ctggtgtatt tgaaaatcca aatgcggctc aacaggcaat gaagccaaat gtgaaacggg
     4441 ttgagccatc gtcaaatagt caattttata aataaagttt ctcccctctc tctgatttga
     4501 ggttcattca gaacatcaaa tcagagagag ggtaaaaaag gagttcaaaa tgttaaaagg
     4561 tattcacccg gcaatttctc cagatttatt aaaagtctta gccgaaatgg ggcacggcga
     4621 tgaattagtg ctttctgatg cacacttccc tgctcactct attcatcaaa acgtcattcg
     4681 tgcagatggc ttaagtgttg ccaccttatt agaaggcatt tctgctctgt ttgaatttga
     4741 ccaatacgtt gaagccccac ttgcaatgat gcaagcagta aaaggcgaca cgctcgatcc
     4801 aagcgttgaa gagcgttacc tcaatgcaat taaaaaagta aacggaacag ccccgaaaat
     4861 agagcgtgta gaacgcttcg ctttctatga tagagccaaa aacgcttatg ccgttgtcat
     4921 tacaggcgag ttagccaaat acggcaacat tattatcaaa aaaggcgtaa caccggttta
     4981 attacaagcg gttaaaaaag cagaattttt tacaaatata aaattaaaag gagttcaaca
     5041 atggacagaa aaatactggc gagacaaatc attgatactt gtcttgaaat gacccgaatt
     5101 gggttaaatc aaggtacagc aggcaatgtg agcgtacgtt ataaagacgg tatgctcatt
     5161 acgccaacag gtacacctta tgagcaaatg accgaagatt ctatcgtctt tgttgatggc
     5221 aacggcaaac acgaagaggg aaaactccct tcaagtgagt ggcagttcca tttagcggtt
     5281 tatgaggctc gccctgaatt aaatgcggta gttcacaacc acgctaaaaa ctgtgccgca
     5341 gtgtctattt taggtgaacc tatccctgcc attcactata tgatcgcctg caccggcact
     5401 aatcacattc cttgtgtacc ttatgccccg ttcggcactc accaattagc cgactatgta
     5461 cgtgaaggca ttaaacacag caaagcaatt ttactcgctc accacggctt aatcaccgca
     5521 gataaaaccc tcgaaaaagc cctcggcatc gcccacgagg tggaagtgat cgcagaatgg
     5581 tatttgaaac tgctcgctac aggaaaacct atcccaacgc taaacaaaga acaaatggat
     5641 atcgtactcg gaaaatttaa gtcctatggt tcttgggtgg aaagcgaaca atagcctgcc
     5701 ataaataaca tacaagcggt gatatttctt aaaattttta caaacggagt gcagtatgca
     5761 aaatgaagta atactcacga tgaaaaacat cagtaaatcc tttgcggggg tcaatgcgtt
     5821 aaaaggtgtt gagcttacgc tgcgtaaggg cgaagttcac gcattaatgg gcgaaaacgg
     5881 tgcaggtaaa tccaccttga tgaaatgctt gctgggcgta tatcaagccg atgaaggtga
     5941 aatcatatat aaaggtcagc ctgttcgctt tgagtcggta ttagaggcac aaaaagcggg
     6001 cattagtatg attttccaag aactgaacct cattccccat ttaacggtgg cagagaatat
     6061 tttcttcgcc cgtgagccac tcaaacacgg tttagtggat aaagacaaaa tggtggaaga
     6121 atcggctaaa ttgctgaatt tctttgagat tgatgttgat ccaaacgatg aagtgagaat
     6181 gttgtcggta gccaaacaac agatggtaga aattgccaaa gccctttcat ttgatgtgga
     6241 agtactgatt atggacgagc cgacctccgc tcttaccgaa aaagagatcg ataaattatt
     6301 tgaattggtc gatagactgc gtgccaaagg ggtgagcatt gtctatattt ctcaccgaat
     6361 ggaagaatta aaacgtatct gtaaccatat tacgattttc cgtgatggca cctatgtatc
     6421 taaccataaa ttcaatgaaa tcacgatgga tgagatcatt accaaaatgg ttgggcgttc
     6481 attggataac catttcccac caaaaaccgc tgtggtgaca aacgacatta tcctctcgat
     6541 tatgaatgct gaacgtaagg gagtgtttga accattgaac tttgacttac gcaaaggaga
     6601 aattctgggc attaccggct tggttggagc aaaacgtact gaactggctc gagccatctt
     6661 cggagcagac ccacttgata gcggtgagat ttttgtgcac gagaacaaag tcagcattaa
     6721 agatccgagt gatgcaatta aagccggtat agcctatttg tcggaagacc gtaagctcaa
     6781 tggtgttgca gtaagaatgt cgattcgtga gaatatcacg atggcatcta tggataaagt
     6841 tgccaatcaa ataggtgtga tttcttacga tgaagaagaa aaagcctcaa aaactttcat
     6901 cgacaaaatg gaaatcaaaa ccccaacgat tgagcagaaa gttcaaaact taagtggtgg
     6961 taaccaacaa aaagtggtaa ttggtaaatg gttattccgt gaagcaaaag tgatgatttt
     7021 tgatgagccg actcggggaa ttgatgtcgg agcaaaatat gctatctatc aactgctcga
     7081 tgagcttgct gccaatggcg tgggtgttat cgtgatctct tccgaattgc ctgaagtctt
     7141 gggagtttcc gaccgcatca ttgtaatgcg tgaaggtaga atgacaggta tgctcgagac
     7201 taaaaaaacc aaccaagaag aaattatgca ttatgcaact ggtgttaaaa atatgtttgc
     7261 tcgtgaatat ggggtggaaa aatgaatgaa aaacaaaaag aaatgttaag aaaaatggct
     7321 gcattggctg gcttagtact attaatcatc tttttcagcg taaccaatga atacttcttt
     7381 acctccaata acattatgac agtagggcta caaacctcta ccattgcgtt aattggtatt
     7441 ggggcaacct gtgtgatctt aaccggtgga attgatttaa gtaccggttc agtagttgca
     7501 ctctccggtg tggcagctgc aatgattgta aatgccggtg tacccgtacc actaggaatg
     7561 attttaggga ttttggtcgg cggtatttgt ggcttaatca acggcatttt agtcaccaga
     7621 atgaaattgc ctccgtttat tgctaccctc ggtatgatga tggttgcccg tggtttagca
     7681 ttgtatgtta ccaatgccgc accagtttcc ggaatgcctg aatcctttgc caatctcggt
     7741 aacggagcat tatttaaaat tgtggaagaa ggggcaaacg gcttgccgaa agtggtattt
     7801 gcaggtattc cttaccctgt gattattatg atctttatta ccgtactatt cactttcgct
     7861 ctctctaaac tgaaagtcgg acgctatctt tacgcaattg gttctaacga agaagccgca
     7921 cgcttatccg gcattaaaac caatattgtc aaaatctatg cctatgttgc cagtggctta
     7981 ctctctggtt taactggcgt tatccttgcc tcccgcctcg tcaccgccca gccaaacggt
     8041 ggggtctctt acgagctgga tgcgattgcc agtgctgtgg tgggcggcac atcgcttatg
     8101 ggcggtgtgg gtactatccc cggcacactc atcgggtcat tcattatcgg ggtactccgt
     8161 aatggtttga atatgaatgg cgtttcttca tttgttcaaa tgattgtcat cgggcttgtg
     8221 attatcgtgg cggtctctct cgaccagctc cgccaatcca aaaaagccgg taaaaaataa
     8281 tccactctta aaggagaatt aaaatgaaaa aatcagcatt atttactgcg accctctttg
     8341 gtttatcgac cttatttgca ggcagtgcaa tggcaaaatc tgatgaaatc gctgtgattg
     8401 tgaaatctgc caactctacc ttctggcaaa acgtgcgtaa aggggctgaa actgccggca
     8461 aagatattgg aggacaatac aaagtcacct tccaagggcc ggaagccgaa acagcgattg
     8521 acgcccaagt gaatatggtg gacaacgccg taaaccgtgg cgtggcaggc atcgtactgg
     8581 ctgcctcaga cccggtagca ttagtgccgg cggtgaaaaa agcttatgag agtggcattc
     8641 cggtggtgct tatcgattcc ggcatcaaca gtgacggcaa atactaccaa tctttccttg
     8701 ccaccgacaa ccgtgcagca ggtaaattag cagcggaaaa actgcttgcc aaagtcaaag
     8761 gcggcaaagt ggcagtgatg agctttaccc aaggggcagc atcagcgatt gagcgtaccg
     8821 gtggttttat tgacgaaatc aaagcaaaag ccgattacaa actggtcggc ccgtactact
     8881 ccgattcgga tatgaccaaa gcgttaaacc aaaccgaaga cgtattaggt tctaaccctg
     8941 atcttgcagc gatcttcggg gcaaacgaac cgactgcggt aggaatggca cgagcggtga
     9001 aacaaaaagg ctttgccggc aaaattgtag cggtgggctt tgatggaaac tccgacctac
     9061 aaaacttcgt gcgtgacgga acactagacg gcatcgtggt gcaatcttcc taccaaatgg
     9121 gctataaagg cgtggacacc atcggcaagc tgattaaagg cgagaaagtc gaaaaagtga
     9181 ttgataccgg ggtggtttat gtcacgaaag aaaacattga tagcgaagaa gcgaaaggtg
     9241 ttctttacta acattcaagt taaacggggt ggggttgccc accctttcag ccgaaaggaa
     9301 gccaatatgt caaataccct taccgataaa gccttagtgg tgattgccgc acttggcggt
     9361 cgagaaaata ttgtcgatgt ttacgcctgt attacccgcc tacgtgtgga ggtgaaaaat
     9421 accgacattg tggaatggga taaaattaaa tctgtcggtg cgttaggcgt tgtgacctca
     9481 ggctcagtta ttcaatctat ttttggtagc gatgccgaag cctaccgtga tgaaatcaaa
     9541 cgtattttga atatttagcc taagcacact cacaacaaaa gaatcgcaac aagcggtgaa
     9601 atttttatca aaatttgcaa aaaaatgacg taatttgacc gcttgcaagt taatcgaatt
     9661 gtttaacttt taagaaggaa aatagtatgg caaatcgtct tatcctcaat gaaaccagtt
     9721 accacggcaa aggagcaatc caaaatattg ttcacgaagt gaccagccgg agtttcaaaa
     9781 aagcccttgt ggtaacagac aaagacctga tcaaatttaa cgttgcccaa aaagtcaccg
     9841 ccttgcttga tgccgcaggc ttgccttatg agattttcga tgaggtcaaa gccaacccgg
     9901 cagtcgatgt gatcaaagcg ggggtcgcaa aattcaaagc ctccagtgcc gattatttaa
     9961 ttgcgattgg tggcggctca ccgattgata gtgccaaagc gattggtatt atcatcaata
    10021 accctgagtt tagcgatgta ctttcattgg aaggtgtcgc cccaacccac caaaaatgtg
    10081 tgccgattat cgccattcca actaccgcag gtacagccgc agaagtcacg attaactatg
    10141 tcattaccga tgaagcgaaa aaacgcaaat ttgtgtgcgt ggacgttcac gatgtgccgg
    10201 cagtggcgtt agtcgatcca gatatgatgg aatctatgcc gaaaagcttg gctgccgcaa
    10261 ccggtatgga cgctctcacc cacgccattg aaggctacat taccaaagcg gcgtgggaat
    10321 taaccgatgc tctacacctt aaagcgattg agctgatcgg ccgttcattg cgtggtgcag
    10381 tggagaaaaa tccgaaagat gtcgaggcaa tggcattggg acaatatgtg gctggaatgg
    10441 gcttctccaa cgttgggctt ggcgcggttc acagtatggc acacccgctt tctgcctatt
    10501 acgacacccc acacggcatt gccaacgcag tattactgcc gtatgtgatg gaatttaata
    10561 aaaattacac cggcgaaaaa taccgtgaaa ttgcccgagc aatgggggta aaaggcgtag
    10621 atgaaatgag ccaagaagag taccgcaacg ccgccattgc tgccgtacaa cagctttcac
    10681 aagatgtcgg cattccgcca aaactgcatc aaatcggcgt taaagaagcc gatttagcgg
    10741 cattatcggt cgatgccttt aatgatgtct gcaccggtgg caacccgaga gattgtacgg
    10801 ctgaggagct gttggaggta tatcggatcg catactaagt tctatctttg ttaaatagac
    10861 aagcggtgat tttttaataa aaatttgcaa tttctgttaa aaaaatactg atagtcataa
    10921 tgcccgattt ctcatattta tggaaaaatc gggcattttc gttgcttttt tatcgccaag
    10981 aaatgtgatt ttgttcacat ttatatctat aaattaacaa aaataaaaca atttgtttgc
    11041 aaaggcggtt cagttaccga atgatagtca tcaacttcca ctgtggataa aaaaggagca
    11101 actcatggtg aaacaacata aaatgtatat taatggtgaa tttgtgcctg cgttagatgg
    11161 tcgcacttta gcagtctata accctgccac cgaaaaagct atctccgaag tccctcgtgg
    11221 cggagctgat gatgccaaaa tcgctatcga tgctgctgaa gccgcccaag aagcttggga
    11281 acgtttacca gcgattgaac gaggaaaata tttacgtcaa attgctgtgg ggattcgtga
    11341 gcgtgccgat gaaattgctc gcactatttc cgaagaaatg ggtaaaactc tgtccttagc
    11401 aaccgttgag gtacatttta ccgctgacta cttagactat atggcagaat gggcgagacg
    11461 ttatgaaggg gaaattatcc aaagtgatcg cccaaatgaa catattttcc tatacaaaaa
    11521 agcgattggc gtcaccaccg gcattttacc ttggaacttc ccgttcttcc tcattgcccg
    11581 taaagcggct ccggcattag taacaggtaa tactattgtg attaaaccga gtgaagatgc
    11641 acctaataat gcgattctct tttcggaaat cgtgcatcaa gtcggtttac ctaagggggt
    11701 atttaatgtc gtcaccggct atggcaatga agtcgggccg gaactttcag gcaatgaaaa
    11761 aatcggtatg gtttccttta ccggtagcca gtttgccgga caaaaagtga tggaagccgc
    11821 cagcaagaat atcattaaag tcaatttgga attgggcgga aaagcaccgg ctatcgtatt
    11881 agacgatgca gatcttgagc ttgctgctac cgctgtagta aattctcgaa tcatcaattc
    11941 aggacaggtt tgtaactgtg cagaacgcat ttatgtacag agttcaatta aagagcaatt
    12001 tgtccaaaaa ttggtagaga aaatgcaagc ggtgaaatat ggtaatccat tagaacaaca
    12061 agacattgat atggggccga tggtaaatga aaaaggcttg cataaagtgc aggaaatggt
    12121 gacacacgca ctgcatcaag gaggtaatct ggtattaggt ggtaacgtgg ttgaaggaac
    12181 aggctactac tttgagccaa ctattatcga caatgtagat aactctatgg atattatgcg
    12241 tcacgaaatt tttggtccgg tcattccggt tgcgacattt gataccattg atgaagcgat
    12301 tcgcttagcc aatgattgtg aatatggctt aacctcttcg gtttacacgc aaaatatcaa
    12361 taaagcgatg aaagtaattt cccgcttaaa attcggagaa acttatgtaa accgtgaaaa
    12421 ctttgaagca atgcaaggct accacgccgg ttggcgtaaa tcgggtattg gcggtgctga
    12481 cggtaagcac ggcttagagg aatacctaca aactcaggtg gtttatctgc aatttgatga
    12541 taaagtatag attcttctaa aaactcccac ttatcaaaat aagcgggagt tttcttttag
    12601 gttaaccttg tatcaaaatt gcaaacaaaa atattctaat gttaagtaaa tgtttaataa
    12661 ttatttatgg ttaactcttt ttggctaatt aatttgcaat ttaaattaat tgagtgcaga
    12721 atgccattag ccttttttga aatcacattc cataaaatgg cttgattaac acaacacaat
    12781 tatcactcaa attaggattt tcattatgag tattttccaa caaaccaatc caaaccgccg
    12841 tcgttatggg ctagctgtat ttatcgggat tattgccggt attatttcag cattcgtaaa
    12901 atggggggca gaacatcctt tcccacctcg tagccctatc gatctgttta ccgctgcttg
    12961 cccgcaacct gtgttagatg caatgaatgc cgcagcagac caagtggctg ccaaaaccat
    13021 cgcattacaa gaatgttcac gtgcattttt aaacccacca cacgttttct tacgtgatta
    13081 tattggtatc gatccaactg aagcagcatt tacctttgct gaccacgcgt tcaactggat
    13141 tggtgtcacc catatgattt tctcgttagt ctttgcgatt ggttactgca ttgtggcgga
    13201 aatcttccca aaaattaaat tctggcaagg tatcggtgcc ggtatcatcg ctaatatttg
    13261 tgttcactac atcaccttcc cggcattagg tttaacacca ccggttgctg aatggccgtt
    13321 atatgaacac atttctgaat tagttggtca tattttctgg ttctggacca ttgaggtgat
    13381 tcgtcgcgat ttacgtaacc gtattacgcg tgaacctgat gccgaagtgc cgttagatca
    13441 accgttccgt taatttaaaa ttagctcgat ttatacaaaa gccgcaatca cgttgcggct
    13501 ttcttatttt acaagcggtc aaattttcat gaaaatttac caaacaaaaa gcacattgtt
    13561 tcatgtagca atgcggagct tggctttata agaaaaatac accaagttgg aacagttttt
    13621 caatttcatc gatctgtttc ttatcgttca caaaaataat cacacggtca ttttctgcaa
    13681 tcatggtgga tttgtgggcg ataataactt cttcgcctcg caccaccgcc ccaacaattg
    13741 ccccttgcgg tagttttaat tcacggattt gtcgtccaac cacttttgaa gtggttgcat
    13801 cgccgtgagc gataatttct accgctcctg caaccccaag tttgagtgaa gaaacttgta
    13861 aaatatcgcc ttttctaacg taactagcga gagcagaaat agtagcttgt tgtggggaaa
    13921 tggcaatatc aatagtgcca ccttgaatca ggtgtaaata ggcagggcgt tgcactaaaa
    13981 taatcacttt tttcgcccca agccgttttg ccagcagggc ggacataata ttcgcttcat
    14041 catcactggt gacggcaagg aataaatcaa tattctcaat atgctcctca aacagcaact
    14101 cttcatcgga ggcatcaccg gtaagcacca tcgttttaga tagtttttct gctaattttt
    14161 cggctcgaac cggattgcgt tcgataattt ttacccgata ctgatcttct aaatcccgag
    14221 ctaacgaaga gccgatgctc cctccaccga caatcataat ccgcttatgt gggcgatcaa
    14281 gccgttgtag ttcactcatt actgctcgaa tatgttgggt tgcacagatg aaaaagactt
    14341 catcacctgc ctcaataata gttgaacctt gtggcacaat cgctttgtct tggcggaaaa
    14401 ttgccacgac ccgagcatca atatgcggta aatgatcacg cagggctgaa atcgggtaac
    14461 cgaccaaagg cccaccgtaa taggctttta cattcacgat actgactaac tcatcagcaa
    14521 aatgagtaat ttgcaacgcc cccggatagt gaataaggcg taaaatatct tctttgacta
    14581 aaatttcagg ggcaataata tggtcaatag gcaatacatc atcattaaac aaccgctctc
    14641 gttctctcac ataatcagca ctgcgaatac gggcaatttt ggtcggcaca ttaaataaag
    14701 tgtaagcaat ttggcaagcg atcatattca cttcatcact attagttaca gcaactaata
    14761 gatcagcatc acctgcaccg gcatcacgca aggtttgagg tgaagcatat tcgccccgaa
    14821 tcacctgtaa atcgtgttta tctttgagct tgtctaaacg agttgggtca ttatccacca
    14881 agacaatatc attgtcttca ctcaccaaat tttctgccag cgtagaacca acttgtcctg
    14941 cccctaaaat aattactttc attactctgc cactttttgt agttttgcgt agaagaaacc
    15001 atcaccaccg tttggttgtg ggaagaactg tttttctaac actttttcgc cgttaaaatc
    15061 gatttcaagt tgttttgcat tcggtgtatc ttgtaaaaac cgttgaattt gctcgctatt
    15121 ttcttgcggt aacaccgagc aagtggcata taacaaaatg ccgtttggct ttaacctttg
    15181 ccataacgcc ttgagaatct caccctgtaa tgtggctaat tctgcaatat caccctcttt
    15241 acgcaaccat ttaatatcag ggtggcggcg aatgactccg gttgcggaac aaggggcatc
    15301 aagtaaaatg cggtcaaaca gcacaccctc ttcaagccat tcctcaggtt tggaagcatc
    15361 gccacaaatt acctgtgcaa tctgccccag tcggactaag ttttcacgca ctcggcttaa
    15421 acggctctct tcaatatcca acgccataac ctttgctttc ggtgcttttt ctaaaatatg
    15481 ggtagttttg ccacccggtg cggcacaggc atctaaaacg gtttcaccat tttctgcccc
    15541 gagcaactcc gctgaccatt gtgcgtgagc atcttgcacg gttgcccaac cttgctcgaa
    15601 atgtggcagt tggttcacat ttaccgctct ctccagcaat aaagcacact ttggcacgca
    15661 agcggtcgga ttttctgaat tttttgcaaa ttcaggctca accagctcgc taatcaacgc
    15721 cgcataatca ttggtcttga tatgttgttg attgactcga atccacattg gtgggcgttg
    15781 gttgtttgct tcaacaattt ctcgccagtt cggataggct tttttaagtt tattgaccaa
    15841 ccattcaggg tggagcgttt gccaatgttt atctaccttc gctaagattt cttcttgctc
    15901 tcgcagaaaa cggcgtagca caccgttagt caaggctcgg aagctatcca gttttagcgt
    15961 tttagttgca ttcactacct catcaaccgc agcgtgtgcc ggcactcgca tataaagcag
    16021 ttggtataaa cccactaaca gtaagcaatg caccaaacgg gttttgcctt tcagcggttt
    16081 ttcaactaat aatttgatga tcgattccaa gcgaggcagc acacggcaca ctccgaaggt
    16141 gatttcttgc actaagggta aatcttttgg ttcaagctgt ttttgagcgt caggaatcaa
    16201 ggtggaaagt gatttacctt gatctaacac ctgtaaaata atggttgcac ttattgctct
    16261 agaagaaagt gctttgaacg attgtttttt cataaataaa aatgccattc cgacagaatg
    16321 gcactattgt aactgaatgc gggattatct taaaactaaa attggcttgg tggtgttgcg
    16381 agccacttta accgtattag agcttaagcc cttcgcattt ggtttgctgc ttgccagcat
    16441 cataattaaa tccaccgact tttcatcggc aatacggcaa atttcttcat aaatcgtacc
    16501 atacgccaca atgtgctgca cttttgaacc ttcaggaaaa tggtttttgg taaattcgtg
    16561 caatttttgg tttgcttcag ccaccacttc tttatcgaaa tttttcggca agaatgcaga
    16621 aattaagctg ttatccaccg gctcaataat agacacaacc cgataaaccg cattcggatt
    16681 ttttgccgtc atttgtaatg ccgtatctac cacatattta gcacttttta ggtcggctaa
    16741 atcaatcgca ataagtaatt tgttatacat atttattccg taggggcagg tcctgtgcct
    16801 gcccgaatat taactaaaat agcggacggg cacaggaccc gtccctacat agcatataaa
    16861 tactatgcaa taacacactg ttttttcact ctacggcgtt ggtttgccac aataccaaat
    16921 accaacaata gagcaggaat gaagatccaa tctttagaag gagcatcttg cggtacggca
    16981 atgtagtgaa tggtttgatc ccagtttaag cctgctttag ctgccggaga atccatttct
    17041 accatatcaa tcaccacttt tggtgtttct acgccatcaa ctttgatttt ttcatcggtt
    17101 tgaattagcg ttaagcctaa gtttttcaaa cgctcttcgc cggttgctcc ttccggtaca
    17161 ggtaattgag cgtagaactc aatttcttta ccgtaagggt ttaatccctc tacttttaaa
    17221 gtaacatttt gacctacttt gcttgcaagc aactgttctt caaactgcac cggctcgata
    17281 tgacgttcag acggataaat tctgtccata aagaagcccg gacggaacaa ggcgaaagcg
    17341 gctacaacca gcaacgccgt ttcccaccat ttgtttttag tcacaatata ttgcattgta
    17401 gcagaggtaa aggcgagaac cccaacagtt gcggtaataa acacaaccca gccgtgcccc
    17461 ggataacgca gatcaattaa taataaatcg gtattaaaaa taaataagaa cggtaaaatg
    17521 acggttctta aactatattt aaatgccacc ataccggtat taatcgggct accgcctgaa
    17581 attgctgccg cagcgaacga ggctaaacca acaggtggag tcacatctgc cataatccca
    17641 aaatagaata cgaataaatg caccgcaatc aacggcacga ttaacccgtt ttgacgaccg
    17701 acttccatga taaccgttgc cattaatgat gacaccacaa tgtagtttgc agttgtcggt
    17761 aagcccattc ccaaaattaa gctgaatacg gctaccaaga tcaacattag cacaatgttg
    17821 cccattgata ggagttcaat cacacttgaa agctgaaccc caaagcccgt tagtgccaca
    17881 acgccgacaa taatccctgc tgttgcggta gcgagggcga taccggtcat attacgaccg
    17941 ccagcctcaa ggctatctac cacatctcga acaccttgtt tgataatctc tttggttacg
    18001 ctctctttac ggaagaaatt cagtaacggg cgttgggtta attgaataaa aattaaggta
    18061 atggttcccc agaatgcgga taagcccggc gaaagcattt ccaccattaa gcaccaaagt
    18121 agcacaacca caggaataag gtaatgtaaa cctgcattta cggttggttt tctttttggt
    18181 agagaaacaa tttctgagtt tggatcgtcc gcttctaaat cagggtagct tgccacacgg
    18241 cgaatagcca gtagatacca taagcctaag aaagcacaga caatcataaa cgcataatct
    18301 tctgccacat cacgaatcca acctaagccg tagtaaacgc caatcgctaa tcctacgatc
    18361 actaaaattg aagctacggt tcttagcaag aagactaaaa tcgggcttgg ctcttcggct
    18421 cttggtaagc cttgtaaatt catcttacaa gcttctaaat gcacgatata caccaacgca
    18481 atatacgaaa ttaacgcagg taagaaggcg tgagtaatca gctggctata cggcatattc
    18541 acatattcga tcatcaagaa cgctgcagcc cccattaccg gtggcataat ttgaccgttt
    18601 actgatgagg caacttccac cgcaccggct ttttctttgg taaagccgac ccgtttcatc
    18661 attggaatag tgaatgtacc tgtcgtcacg acgtttgcaa tcgaagagcc tgaaatcaag
    18721 ccggttaaag cggaagaaac caccgccgct tttgccggac caccacgcaa atgccctaaa
    18781 taggcaaagg cggttttaat aaagtagtta cctgctcctg ctttatcgag caacgcccca
    18841 aataatacga acaggaacac atatttggtc gaaaccccaa gggctacacc aaacacgcct
    18901 tcagtggtaa tccattgttg gttgataatt tgagaaagcg aacctgagcg gtggcttaca
    18961 atccaatctg ccgggaaata ttgcccgaag aagttataga tcaggaatac aatcgcaata
    19021 atcacaagcg gtaagccaag actacggcgg gtcgcttcca gcaccaataa aatccctaaa
    19081 cagccggcga taatatcttg cgtatttggc gctccaaaac gtttcaccaa accttcatag
    19141 aagaaaatat aatacaacgc taacccagct cctacgatgg caaacaccca atctatttta
    19201 ggaatatgat gtttaggcga gctggcaaaa gcagggtaag ataggaacgc caagaacatt
    19261 gcaaaggcta agtggataga acgggctttg gtgtcgtcca ccaccacatt caaattaatg
    19321 cctgcgtgag taagccattc ttggaataca aacggcaatg gagaagcata ataaatttgg
    19381 aacacagacc aaagaatggc gacatacaca atggcttttt tcgcaagacc ggacggggtt
    19441 cgccccccac tgtcattgga ggcaaccata tcttgtaggt catcgtaatc aaccttagat
    19501 tcaactgaca taaagactcc tcaaaacgca agcggtcatt ttcttattaa attttacaaa
    19561 tttcctcaaa aaacaaccgc ttgctcgtga aaacactgtt gataagttat caattaaagg
    19621 tgaaaatcga taacttatca acagtttcaa aaaagcaaaa aaccagcacg ctaaaaaacg
    19681 tgctgattga atcaaattac agaaaggaaa tattacttaa tccaaccttt ctctttatag
    19741 taacgaattg caccttcgtg taacggagca gaaagggcgt ttttgatcat ctcttcttgt
    19801 tttaagtgtt caaacgccgg atgtaaacgt ttgaaacggt cgaagttatc aaataccgct
    19861 ttggttacat tgtacacttt atctgcatcc acatcggcag aagtcactaa cgttgcatat
    19921 acaccgaagg tttctgtcgg ctcatccgaa cctttatata aaccgcccgg aatcgtagct
    19981 ttggcataat atgagtgatc tgccactaat ttatcaattt cagggccggt taccggcact
    20041 aatttcgcat cgcaagaagc ggctgcttct tttaacgcac cattcgggtg acctacgtta
    20101 taagtgatgg catctaagtt gttatcacac attacagatg ccatttctgc cggtttcaat
    20161 tcagaagcca ctttgaaatc tttatccgtc cagccttttg ccgctaaaat cacgttcatt
    20221 gttgcacgag taccggaacc cgggtcgccc acgtttacac gttttgcttt taaatcatcg
    20281 aacgatttaa tgcctgaatc ggtacgagcc attactgtaa acggttccgg gtgaagcgag
    20341 aaaatggcac gaattttatc gtttttctta ccttcaaatg agcttgagcc gttataggcg
    20401 tggtattgcc agtctgattg tgcaatcccc atatccattt cttttgctgc aatcgcattt
    20461 aagtttgcaa ccgatgcccc tgttgaagga gcgttacatt ttaaacctgt ttttgctgaa
    20521 tcacggttta ctaattggca aatagattga cccacaacat aataaacacc ggtttgaccg
    20581 cctgttccga tagtcacaaa tgtttcagcc gcttgaacag atgctgttcc catcacaagg
    20641 cttgcaagga aagaaagttt gactaatttt ttcattttta actcctaaaa ttaaggatca
    20701 gaaaacaaag atttattgtt ttgagccact gctcacacta caagagatac aaaacttctt
    20761 tgagttgcat ttgcctctta gagcttgttt ttagcataga ttttataatt agtaaattta
    20821 ttttttcgca taaaaaaatc tatgcctaat gccacaagct aaaatgtttc actatctctt
    20881 aacaaatgca catcgccttt tcgtcttaaa aaaccgctac gatcaaaata ttcaattaat
    20941 tgtaccgtca attttcgccc atactgcaac tcatctcgca actggttcac cgaaatgctg
    21001 ccgttttggg cgataaaatc tttaattaac gttgcaaatt gcccgatttg ttcgcttaat
    21061 aaaaatctat ctttgacgat tgggattaaa tagcccaatt tcccgacttt atacagcaaa
    21121 ttccgcattt gggtttcatc aatcgagagc tggcttgcaa tatccctcac ccaaagagct
    21181 tgattggttg cctcaaacag cggtcgaatt tgttgccaaa tttgcaattc atcggcgttc
    21241 aattcgattc gatgttccgg caaatgtaac caaccacgac tattgaccaa ggctttttgc
    21301 tccaccaaat cctcaataaa ttgatttgcc aagttttcag gcaaatccaa taacgctatg
    21361 cgatataaac gagctttggt cacgccgatt tgatcttgat gttgcaggtg gtattctgcc
    21421 attttttcca acacccgttg ctgggcttga gctttaaaat ccgaattaaa taaccattta
    21481 gacgagacat caaaccccag ttttgcaata tcctctgcaa aacattgctc cgcccataac
    21541 agcaaggata aatccatcgc tctgttttgc agatagagat caaggcgtgt cgcaaagtca
    21601 ttacaagcgg tggtttttgc taaatttttt accaaagcta aacgggcttc ggtacgttta
    21661 tgccgttttg gtgagtgaat ttccagcacc tccgctccgg ctaacgttag gctgtcatca
    21721 ccgctgcgga tgatcaactt atcaccaacg gcaatatgaa gtggttcatc taaaatcact
    21781 tctgcaaaaa attgctgatt tttgaccgct tgttgcccct caagcaaatt caatttgccg
    21841 gtaatgtgcg aagcaaaatg gtaaagatgc acaatgctgt tttctttgaa ggcttgattg
    21901 gcagtgagtt gaaccgtaat gcgatcggtg gcaaatttcg gctcaagctc ggtaatccaa
    21961 tcgcctcgct tgatttcctc tttttccacg ttagcgatat ttaacgccaa acgttgccct
    22021 gccactcccg tttccgaagg cgtattttgg gcgtgaatcg ctttgacccg cactttttta
    22081 ccattcgaca aaaataactc agagccaacg ctcacttttc ccgccaccgt tgtgccggta
    22141 acgaccaacc ctgctccttt cacattaaac acacggtcaa tcgcataacg gaacggttta
    22201 tgggtttggg tatgttgttg atttaattga attaaatgtg cttttaattc ttcaatccct
    22261 tgttgcgttt ttgccgaagt aacaaaggtt tttgcttccg ctaaaaacgg atagcttgtt
    22321 ttcacttgct caattaagtg gctgatttga gtttcttccg cccgatctgc cttagtaatc
    22381 acaatcataa tatgctggaa attcagcagg tggagaatat ccaaatgctc ttcggtttgt
    22441 ggcttaatcc cttcttcggc agaaatcacc aacagggcgt gttgaatgcc gccaagccct
    22501 gccagcatat tagataaaaa acgctgatga cccggcacat caataaaccc taaaatatcg
    22561 ttctcaatcg gtaaataggc atagcccaaa tcaatggtta gcccacgttt ttgttcttcg
    22621 ggcaaatggg cggtgttagt gccggttaag gcttgtaaaa gcgatgtttt gccgtggtca
    22681 acgtgaccgg cggtgcagat gatcattgat agtccttata aaaatgagta actattctgg
    22741 cgagcagatt taaaatctac aatatagaca ttttcctgac caatcaggaa ctttacttgg
    22801 tacttaccgt ttaaaatggg aatttctttt ttcttgcgaa gtcgataaac atcggcagta
    22861 aaggaaagtt tatccacttc actttttatt gcatcataaa attgttctgc aataatcggg
    22921 ttttgggatt gttgtaatat ataatctgct tgataaaaca attttatttc tgctttctgt
    22981 agccaaacaa tattgtaatc aaacttcatc atttttccgt gattcccaat tttttgcgta
    23041 aatcttccat cacctgagcg tgggatttag tttcaattaa gccattttct aattgatgta
    23101 ataaatcaag ttcatcatta gtataaaaac tttgtggctt atctgtgcgt aattttgcta
    23161 aatcttgtgc gagtatgagt tccatatttc ccccttacaa acttagatta ttcaatattg
    23221 taacctgata aaactaaagt tcaaggagtg tatttaaggc gataaccgct cttttttcca
    23281 ctcattattt tccaaccaat aatgaatgcg gtcgtgtagc cggctacttc tgccttgcca
    23341 gagttcaata ctgtcgggaa tcagaatata gccaccccaa tgcggtgggc gaggcactga
    23401 aagtggatat ttcaatgcaa attgagctga ttttagcaac aaagccttgt agttttcgat
    23461 aggctgactc tgctcgctcg cccaagcccc caaacggctg gtgtaaggac gagagtcaaa
    23521 ataggcatcg gattctgcct ctggaatttt tgctattttc ccttcaatcc gcacttgacg
    23581 ttgtaattct gcccaaaaga aggttaaaca tccaaaagga ttatcggcaa tttcccaccc
    23641 tttacggctt tgataattgg taaagaacac aaagccttgt gaatttacct ctttcaacag
    23701 caccattcgg ctacttggtc gcccgtttgc tgcaacggta gcaatattca ttgctgtcgg
    23761 ctcattcact ttggcattga ttgcctcact caaccattgt tcaaattggg tgattgggtt
    23821 tgagtgacaa tctcggattg aaagcacttt tttggtgtaa tcttctcgaa tgtggtgcag
    23881 atccataagg attcctttat cttattctaa ataatcggac aggcacagtc tgccctacca
    23941 aaattaatat tccaacatct caatcaactt atcaaactcc gcgaccgagc gtaaatctaa
    24001 ccaaaatttc tgctgagcaa aacgcccgat aatcgggctt gggtaggttt taaattgttg
    24061 ttccaatgca attaaatcgc tctgtttttc agcggaaata gtcactgcca ccgaaggtaa
    24121 ggtttctgtg ggtaacgcac cgctgccgat ttgagcgagg cttagctcaa tttgcaaaat
    24181 ataagcagaa tttaaccgct tgtgtagtgc ctgttttaat cgctctgctt tgtgttgcaa
    24241 ggtttcaagc ggttgagtga gtaaatgaag agtcggcaag ttatcggtta attgctccgg
    24301 aaataagtag tggcgtagcg ttgcctcaag tgccgataaa atcactttat cgcaacgtag
    24361 cacccgtttt agcgggtgtt gttgcagttg gctaatcatc gcttggctac cgacaataat
    24421 gccggcttgc ggcccgccta ataatttatc gccagagaag gaaaccaaat ctaccccagc
    24481 cgctactttt tgctgaacct ttggctcagc aggcaaatta agagcttgca tatcagttag
    24541 cgaaccactg cctaagtcgg taatcacagg caggttaaac tctttaccga gagccaccaa
    24601 ttcctcttcc gacaccgaac tggtgaaccc ctcaatgtgg tagttactgg tgtgaacttt
    24661 cattaaaaag gcggtatttt cggtgatcgc gttgcgataa tcctttaaat gagtgcgatt
    24721 agtcgtacca acttccacca atttgcaacc ggcttgagcc ataatatccg gaatgcggaa
    24781 tgccccgcca atttccacca gctcgccacg ggaaacgatg acttccttgc cttgtgcgaa
    24841 ggttgctaac atcaacaaca ccgctgccgc attattattc acaatgcaag cggcctccgc
    24901 tccggtaagt atttgcaaca actcggaaat gtagttatct cggtgcgagc gcttgcctgc
    24961 ttcaatatca aattccaacg ccacattgtt tcgcattgcg ttggttgctg cctgtatcgc
    25021 cttttccgac cacaacccac gccctaagtt ggtgtgtaac accgtaccgg ttaagttgaa
    25081 cacggaacgg attttcacct cactcaacgc ttgcactttt tgttccagcc ttataaaaaa
    25141 caggttttca tcggcaataa aatccggcaa ggcttgctgt tgggaaataa attgacgtgc
    25201 ttgagtaagc aaactcctag cttgttcagc cacgctggaa tatgcaaatt tttggcataa
    25261 ttcgaccgct tgtggctttt tcaacaagag gtcgagcgag ggaatttggc gaaatagttg
    25321 ttgcataatg tgaatgattg agagaatatt ttggacaatt ctaataaata aagtacaata
    25381 ttgccaattt ttcggaagtg cgtcatctcc ggtgaggtgg caggacttca aatcctgttg
    25441 aggacgccag cgttctcggg tgggttcaac tcccatgcac ttccgccaca tttcaaaagc
    25501 cgttaatctt taacggcttt ttgcatttct gccacattct ctctttccgt tttgataaaa
    25561 aatgagactt agctcacatt tttttatttt tctg
//
LOCUS       DANLZD010000018        25252 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.018, whole genome shotgun sequence.
ACCESSION   DANLZD010000018 DANLZD010000000
VERSION     DANLZD010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 25252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25252
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.018"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..211)
                     /locus_tag="PXE26_000526"
     CDS             complement(<1..211)
                     /locus_tag="PXE26_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593139.1"
                     /translation="MIQNDPRDAIILSLLANAVYGGHNNSQISYQETEEVNLYARLRQ
                     VEGDVREIKSNYLTKEAFYKAGGSTL"
     gene            complement(216..596)
                     /locus_tag="PXE26_000527"
     CDS             complement(216..596)
                     /locus_tag="PXE26_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593140.1"
                     /translation="MNNKRIKPEQFADFITQRTGRNLTCPICNSQEHYLHDGYDTFTE
                     LCGEKIIGVPTIPYRIEPSPDEVMKFAAPEFHSLHFNEREGTKYWLDQKARTAVIVTC
                     VCCNNMLFFDRERILEWIKGSQNE"
     gene            complement(647..1306)
                     /locus_tag="PXE26_000528"
     CDS             complement(647..1306)
                     /locus_tag="PXE26_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HDL5593141.1"
                     /translation="MTTLGSRIKAYREQLGISQYEVAERCTSIDNRDKNNKWGQSRIA
                     NYERNNRTPDLDDIEILSKVLGVSPETLAFDTNVQLARPTKSNSYPLISNIQAGLWTE
                     AFDFKDSEGYDYIDTEIDAGPDAFFLRISGMSMEPKFSEGDLVLIDIRKRPHPGDYVA
                     AVNGTGEATLKRYRELGEWSESGNPHFELIPLNPDFPTLSSMKQDIRIIGVAVEHRSY
                     L"
     gene            1436..1642
                     /locus_tag="PXE26_000529"
     CDS             1436..1642
                     /locus_tag="PXE26_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005656653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5593142.1"
                     /translation="MNKIAEIRNQIGISQAQLAVQIGWGQPRIANYETGNRTPSIYVA
                     QKIVEGLNELGANVRIDDVFPVGN"
     gene            1663..1923
                     /locus_tag="PXE26_000530"
     CDS             1663..1923
                     /locus_tag="PXE26_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593143.1"
                     /translation="MPRNELTKNARAIADLIHRKSATVTHKKLARAIGLSESQFSRTF
                     ADNVEMVAVIIDYLSIELADKDELLELKEKRYKRINLEEATT"
     gene            2087..2257
                     /locus_tag="PXE26_000531"
     CDS             2087..2257
                     /locus_tag="PXE26_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593144.1"
                     /translation="MKNQRNDTQKSSLWQEFEYRKRLKNLIESGLSVAEIETRSQQIY
                     EELKSECTTEAN"
     gene            2232..3101
                     /locus_tag="PXE26_000532"
     CDS             2232..3101
                     /locus_tag="PXE26_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HDL5593145.1"
                     /translation="MNAQPKQINPILKLHPKQSEAKKVSVDDGYTQIPNELLKAILRS
                     GVLGWKGSYLLATVLKTLSWHKESDWFTHSQVCEMMNIEPTKYHINQLSAARKELIRE
                     NILFEDGKETGVNLSVFEWKMVYPEKVGSSRNNRELIPEKVGNGYPEKVGNTKETITK
                     EKINNEFTNVNSVQQPETSLPKKTKSEPVDYQGVMEEFNRAVEDTPIPQIRAMSDERK
                     RSVHALAKILRKEFGGYTRQHFADYFNDFVRQASSRKDRFYFGGLDGSAWVANFGCII
                     RSKTFYKTWEDSL"
     gene            3098..4459
                     /locus_tag="PXE26_000533"
     CDS             3098..4459
                     /locus_tag="PXE26_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase"
                     /protein_id="HDL5593146.1"
                     /translation="MSQNLKNITYEVEYLLVGALLKSGLNSKARDVLSWLEPEMFATF
                     QLGVIYEAIRKQALKDNVIDMLLLNTDYGQDFATLAEIMKNTISGANLDGYAEKVRQY
                     HQRREAQRVFLDVAGELQNARDEQLDAITSTGLAHLSKLLQRGGKVKPIDMNDLLEGY
                     LELFQERAKPSFKERLLFTGIEALDGKLGGINDTDICIVAGRAGNGKTETAITFTKNI
                     IENKGSVLFFSLEMSKEQIMDRLIASASGVNSVKLRNPEMMNDEDFARMGTAIQPLQN
                     QQLYIVDKSGLTAEEIVAIAESHIQEYGKVSAVVIDYIGLVRHGKLDGKINRTYQIGE
                     SMERFKTFCKNNHTPMILLAQLNRNADGSRPTNADLRDSGSLEQDASQIIMVHNQRNK
                     DGEPAPYTEWIVTKNRFGANGTVYMQFQQGRFVECDQAEAREYFQPKETKTSSNKRYG
                     AMQ"
     gene            4456..4992
                     /locus_tag="PXE26_000534"
     CDS             4456..4992
                     /locus_tag="PXE26_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HDL5593147.1"
                     /translation="MTDFDKNIKYKIIYADPPWKYKDSGCNGSAENHYTTMNIKEICD
                     LPVQDISDKDSILFLWVTYPMLPEGLKLIEAWGFNYKTIGFQWVKTNKKNKNSFFFGL
                     GRWTRGNTECCLIATKGKPSRVSNKVSQLIIEPIQHHSKKPDIVREKIVELMGDLPRI
                     ELFARNKTQGWDVWGDEV"
     gene            5083..5298
                     /locus_tag="PXE26_000535"
     CDS             5083..5298
                     /locus_tag="PXE26_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593148.1"
                     /translation="MITYKCPKCNGELEDLSINDEWGWFLDEPYRCNGHYTGRFPNIS
                     RDSTLNRTKSCGYFSKEEVKKVNGTQR"
     gene            5282..5788
                     /locus_tag="PXE26_000536"
     CDS             5282..5788
                     /locus_tag="PXE26_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HDL5593149.1"
                     /translation="MAHSVNDIVKAHGRRYKARLKIQMIKMQGGVLVPLNEREAEALV
                     SLKNGEQYEIEVIRTRNPAFHRKVFVFLNFCFEYWSADKTEWEFFDERKQFDTFRKNL
                     TVLAGFKEITYTLDGRMRVEAQSLSYGNMEQDEFEQVYKALINAAIKHVFNNTKDENR
                     INQLYSFF"
     gene            5838..6050
                     /locus_tag="PXE26_000537"
     CDS             5838..6050
                     /locus_tag="PXE26_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593150.1"
                     /translation="MKKNVIRYWLSVPFRIIAVLFFLVILTVRYVGYLLIYPLAFFAA
                     VGSFIVFCQWTYQEWLYYFKRGFAPI"
     gene            6096..6290
                     /locus_tag="PXE26_000538"
     CDS             6096..6290
                     /locus_tag="PXE26_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593151.1"
                     /translation="MTKFFETIAFVMLFGIIPSCLLAINTTLMNMNIKNAPWFMVIIQ
                     LGFNITCYWLWFISVMRNVI"
     gene            6418..6987
                     /locus_tag="PXE26_000539"
     CDS             6418..6987
                     /locus_tag="PXE26_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein NinG"
                     /protein_id="HDL5593152.1"
                     /translation="MANKPPKQHKCKECGSYYIKFQSTQQVCSVKCAMAMGKRKTEAK
                     RKKSAKIDRLEQRKRLEKLKSRRDFEKDLQKIFNKFIRLRDKDLPCISCGRYHQGKYD
                     AGHYKTVGGNPELRFNEDNCHSQCVPCNRHLHGNIVNYRVNLIEKIGLERVEFLERKD
                     HPPLKLTIEQIKDLIKVYKAKCKELERVT"
     gene            6977..7450
                     /locus_tag="PXE26_000540"
     CDS             6977..7450
                     /locus_tag="PXE26_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593153.1"
                     /translation="MLPRKIKNKWLEPEKQKWIEELLRLWGAWEFGGLDLESRVNMIY
                     RLMKSAEGVKSLSSREVCNDSLGTLINEIFTVVTKRDVMLADILKQKYWFGRSERQIA
                     IYYQLRDSEGRKERRWQEIIQDKCKKAERIIADILESKISSSNSTDKLKKYQFSP"
     gene            7678..7753
                     /locus_tag="PXE26_000541"
     tRNA            7678..7753
                     /locus_tag="PXE26_000541"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7711..7713,aa:Trp,seq:cca)
     gene            7770..7955
                     /locus_tag="PXE26_000542"
     CDS             7770..7955
                     /locus_tag="PXE26_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593154.1"
                     /translation="MYNLDDAIQECREKFGEDKPYFSEAGTLTFAGCKALSRLRDEKL
                     GIKAPPNFPFPRVEDLS"
     gene            7981..8151
                     /locus_tag="PXE26_000543"
     CDS             7981..8151
                     /locus_tag="PXE26_000543"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593155.1"
                     /translation="MTEQLNTQSKSGEEDQEKSQDRYAVGWPSRRISDCVQHFRSRKI
                     YPFASNNDVKQG"
     gene            8294..8539
                     /locus_tag="PXE26_000544"
     CDS             8294..8539
                     /locus_tag="PXE26_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593156.1"
                     /translation="MKLMKDMGTQSYIWSGFSTWLAWLGEQQNLMLLSLAIGIVTAIA
                     GLIQRFDEWRRRKREDERAEELHQAKMARLRKGLSDE"
     gene            8532..9101
                     /locus_tag="PXE26_000545"
     CDS             8532..9101
                     /locus_tag="PXE26_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HDL5593157.1"
                     /translation="MSKSLKYGSGIVCGIAAIITLVQYQHPEIRTNQAGLEIIGNAEG
                     CRRDPYKCPADVITVGIGSTEFGGEKIDPNRIYSDKEIAERWAKDLKIAESCVNRHFN
                     GKDMNDNQFSGMTSAVFNMGCYNMRFYRNKQGQYVQTTIHKLAVNKQFEEMCHRLPDF
                     IRASGKVLNGLVIRREKEKALCLTGLVAR"
     gene            9074..9424
                     /locus_tag="PXE26_000546"
     CDS             9074..9424
                     /locus_tag="PXE26_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2570 domain-containing protein"
                     /protein_id="HDL5593158.1"
                     /translation="MLNWISGTIAIVILGLCVWLWGQSQMIDSLRAENRAQAQTIEQQ
                     QKANQRLTDSLEQERQAVEKIQKIANELRNKVEMAKNEITSILAQDSCAKADLPNGVA
                     DSIKRLHQQNNHKH"
     gene            9429..9602
                     /locus_tag="PXE26_000547"
     CDS             9429..9602
                     /locus_tag="PXE26_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593159.1"
                     /translation="MYPPAAYLVPCGRTEFSGRTYGDTVEYLVKVMGERDLCANQIDR
                     IREWQAQTKQGFK"
     gene            9994..10518
                     /locus_tag="PXE26_000548"
     CDS             9994..10518
                     /locus_tag="PXE26_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDL5593160.1"
                     /translation="MTKKGEVKATSKGVGKLTDKQKRFVEEYLIDLNATQAAIRAGYS
                     EKTAYSIGEENLRKPEIRSAIQEAQNKRSERTQITQDDVLNGLLEVIAMSTGKKIVTE
                     TDVAKNDNGELVGFDIAKTKFEPAAANKALELLGKHLGMFKDKVDLINSDGSLNRPMV
                     IELIAPSLDDESTD"
     gene            10502..11722
                     /locus_tag="PXE26_000549"
     CDS             10502..11722
                     /locus_tag="PXE26_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBSX family phage terminase large subunit"
                     /protein_id="HDL5593161.1"
                     /translation="MKAQIELPPKLLPVFAKDYRYKGAYGGRGSGKTRAFAKMSAVSA
                     YKRAMRGESGVILCGREFMNSLEESSLEEVKQAIKSEPFLANFFDVGEKYVRTKDGRI
                     SYVFSGLRHNLDSIKSKARILIAWIDEAETVSETAWRKLIPTVRENNSEIWVTWNPEN
                     RGSATDTRFRQNPPENSCIIEMSYQDNPWFPDVLEQERLNDKQRLDDATYRWIWEGAY
                     LEASEAQIFRGKYQEMEFVPNPDFDGPYYGLDFGFAQDPTAAVKCWVFNGDLYIEFEA
                     GKVGLELDDTADFIAKGVPQIADHVVRADSARPESISYLKRHGLPRIIGVEKWKGSVE
                     DGIEHIKSYGKVFIHPRCQQTLNEFRLYSYKTDRLSGDVLPVVIDAHNHFIDALRYAL
                     TPLMQVKSAKGVLL"
     gene            11719..13095
                     /locus_tag="PXE26_000550"
     CDS             11719..13095
                     /locus_tag="PXE26_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1073 domain-containing protein"
                     /protein_id="HDL5593162.1"
                     /translation="MSLEQDRLAFLAEALGLGNIKRRTLWKEFGYPNTLTFNHFLKAY
                     KRNSIAFAAINRLLDGCWVDCPVIVEGEQKNESKQTTEWESKVERFMKRYWSAIKEAD
                     RRNLVGNYSALLLQVRDGQQWDQPILQGALSSIGEFGLVKLIPVWQSQLSVTEFQEDV
                     TADNYGEPLMYQFSESAFGKKSVSRNIKVHASRVILLNEGGDFNSPHSGVPLLEAGYN
                     KLVDLEKTSGGSAEGFLKNASRQLGIKLTKDVDLRQLEDSAKALGFSSFSDALNDKIK
                     KINSGTDSALITHEGDASVLSVAPADPKPTWEISANEFAASVQIPFTILFGQQTGRLA
                     SDEDKTDWANRCNGRRNGFLTDVITQLLNRLWFIGVLPMPKNSDVTVSWSDLLAPSEK
                     EKIANAQALASVATTSQSAFGFAAVTANEIRESLGFEPLPDNLIPPTIDDENEDQDEN
                     QATADSDK"
     gene            13049..13987
                     /locus_tag="PXE26_000551"
     CDS             13049..13987
                     /locus_tag="PXE26_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL5593163.1"
                     /translation="MKIKTKIKPLRIPTNKADPLNMGVSVAKLFRHIDVIYSQIKRSI
                     KQQILQKMSLRLQANNFEYFPSYLTATELADLLETLQKIIDKEILSNGSQGENLWFDS
                     YIDEAALKGTQSAVTDLGLQSEAYRSQRNLSSIVFSPAYFNRLAIAHMASYSEWQGLS
                     DELRKSLAGVITEAVLNGKNVKETAREIRQKLDVSSKRAKRIAQSSQLAAYRRAEWQE
                     AEEAKEELGLNTKLLHFSALKATTRLAHAQRHGKYFDVAEVREWYSRDGNQFNCYCKQ
                     SVVVVNADGKTDIEPLLVGLAKERKQWVGALKNVKK"
     gene            13974..15344
                     /locus_tag="PXE26_000552"
     CDS             13974..15344
                     /locus_tag="PXE26_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2213 domain-containing protein"
                     /protein_id="HDL5593164.1"
                     /translation="MSKNNVNIVTVINSKNISTESIDGDQHLIIRGVVPIVDDVVMND
                     GLYPADEINKSYNSLEGNFMPLGHPKIEGKYVSAQDVRAVNKHHVGAWAKNVRKESGK
                     VLVDMYINRRFAEGSEQGKTLLERLDGMVTNTNAEPIHVSTGLILNKVKQSGKSKGKK
                     YSWIATNMSFDHIAILLDVPGAATPDDGVGIFVNQDGSEMGVENVNLTQAADYRTEKL
                     FDKVRFYLMANSDLSFEEIHRALREAIRPEGKDKWSFWVEAVYPKYFIYSDDNSGKKY
                     KRSYFIDENDNVQLTSEPVEVVKKIGYEEITTNEEHNPMKTKILAVLNAANVKTEGLN
                     DDQLLEAYNKLQADKGKEPEKPKNEDDSEIDEKIKKAVNAAIEPLQQALQANTDKEQA
                     AMRAAVKAKFNMSDAAVNALQGEVLTELYAQTQQSVGLNNNSANGNGDNQWDGYSLNQ
                     EEKGNE"
     gene            15337..15771
                     /locus_tag="PXE26_000553"
     CDS             15337..15771
                     /locus_tag="PXE26_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593165.1"
                     /translation="MSNVIYRGSVKREPQTVNIVINDTSAPGAVVKLHNGKLEAAADL
                     KGRRFLLGNNRFKGQTIEQAYAKGDTATAFRLEPEQEYYAQIADGTYNFGDELTVKQA
                     GGKLTKAETGDVVLFFFDEESQRVISGGKGYADVVVANAYTK"
     gene            15786..16775
                     /locus_tag="PXE26_000554"
     CDS             15786..16775
                     /locus_tag="PXE26_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="encapsulin"
                     /protein_id="HDL5593166.1"
                     /translation="MLKFTKEQERFVINERINYDKKHALMAANSAGLLGNAMTLPKDV
                     WAEWDRDAVQIQREELVVFNDLAGISKSMPIGKLIHHFQTVSDSGSVNISLDGRSSAK
                     TDNVVLNYHGTPLPIIDSTFSFGWRDMSAAQSEGYQIDGAARANSLRKVAEKMEDLAL
                     NGDSSIVVGNAKLYGLRTAPNRMTNTHNLDLATATPKEIYDVFRDLISKFHAKNYYSP
                     VTLYVNYGDYFAMSTRDYSEQKSEGSILNKVMTIPQIAKIVPASRVPQNEILGLCKRS
                     DVYQVLNGMPLVTRPIARHNETDDYSFQIMAAVAVEFKFDDKGNAGYIQYTKS"
     gene            16787..16993
                     /locus_tag="PXE26_000555"
     CDS             16787..16993
                     /locus_tag="PXE26_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593167.1"
                     /translation="MKWLLTHDSHELKKGDVYEGETLPLWLVGKAIEIEEKSFEVATP
                     SDHADGETGETGETGQKGKKDKGK"
     gene            16996..17373
                     /locus_tag="PXE26_000556"
     CDS             16996..17373
                     /locus_tag="PXE26_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593168.1"
                     /translation="MAAEIELSEARTTLDELGFTSPNSLLELYVQQTNTLDQALNKSG
                     YSEETQKLIKLYLVAILAISSGARRIKSEGAPSGASRTFEYDPNALDNLKSAIRSIDP
                     KGCAESLLPKDKVVGFFDVVGGC"
     gene            17373..17717
                     /locus_tag="PXE26_000557"
     CDS             17373..17717
                     /locus_tag="PXE26_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593169.1"
                     /translation="MSNLSNWSYTAKATLWQAKGKNDDGVLVFSTPQIISCDYGADRK
                     RARFEIGREQAVKNVIWTEFAHAKLGDYVLIGESEQADPILAGAEEIIHIQRFADTFD
                     RNRDDFALITGG"
     gene            17719..18087
                     /locus_tag="PXE26_000558"
     CDS             17719..18087
                     /locus_tag="PXE26_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HDL5593170.1"
                     /translation="MGIKVKGIRQVKQRLNQVVGEVQSQKATRAMFRILNAVAPLAAH
                     YTPVDTSTLINSQFTEMEVNGTRLIGRVGYSANYAAYVHDPNIKQNFRKPSAKKEFLT
                     SALNESKATIKSIVKEELSL"
     gene            18084..18464
                     /locus_tag="PXE26_000559"
     CDS             18084..18464
                     /locus_tag="PXE26_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593171.1"
                     /translation="MISYVKAFKQWLEAHSLADGYVVQLYQWEDTQKAKPVIVIQPNS
                     GSPQVSDLSSEHYLLISLVAGKNSGYTIEERARAIMSKILVEPFASFGYIESMGGLPA
                     PIFTEDNRMIFRLPLRIISTNQEE"
     gene            18468..18950
                     /locus_tag="PXE26_000560"
     CDS             18468..18950
                     /locus_tag="PXE26_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5593172.1"
                     /translation="MGSPSPQNNAENLVVGRAVVLEYGTTDAKPQESEWKVAGAMTTK
                     SWDFSPNSVTSEADDAGGFPETLITNSDFSISGDGEWRKRPKSKELGIKDLVVLYANA
                     VKNRTQPYIWVRLKYAGLTILGKMVITALSSEAPTNDLVKFSIEFKVGDSSTIEIAAA
                     "
     gene            complement(18990..19406)
                     /locus_tag="PXE26_000561"
     CDS             complement(18990..19406)
                     /locus_tag="PXE26_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDL5593173.1"
                     /translation="MFYPALFTPAEEGGFVVTFPDLPEAITQGDTFEEAMEMAEDVLL
                     SCVEIYFDEDRRFPLTRPVNTDEVPVFMPESIYAKVLLHNTMQEQAVSKAEIARLTNI
                     RPPEVQRILAPRHITKIDTIGRILASLGKPLQLSLG"
     gene            complement(19462..19638)
                     /locus_tag="PXE26_000562"
     CDS             complement(19462..19638)
                     /locus_tag="PXE26_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010848235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDL5593174.1"
                     /translation="MKQSEFLRWLKANGVEVENGSKHLKLYYKGKRSHLPKHPSQELK
                     TGLVEGVKKQLGLK"
     gene            19734..20405
                     /locus_tag="PXE26_000563"
     CDS             19734..20405
                     /locus_tag="PXE26_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593175.1"
                     /translation="MKMVSYPITEIGEMLIATDGRDFLFRPSFKNIYKIGSPQEIVKI
                     YALLHGCEIREILPHILTKSESHQSYFWSVLNSPVFGRKILQNAMIVMSCCCDDDISL
                     LIGEWLPSKSGVRYKLGKMPPETIINFAKNLMGHGVIGCCELPKKEQSAKNEFSESFD
                     AVEYISLARTHFNMSREDAENLTMTELQQLLKSQMPAENNSYGQFTEEEYDRIMAEYE
                     KRRAA"
     gene            complement(20420..20653)
                     /locus_tag="PXE26_000564"
     CDS             complement(20420..20653)
                     /locus_tag="PXE26_000564"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593176.1"
                     /translation="MKKDCTKQDFANWLNENQEVCWIKEVSIERILSCVDDYVAICNA
                     RSKDEFELLNDIRELFYSAHYKDFTPVLSGRFF"
     gene            20822..21280
                     /locus_tag="PXE26_000565"
     CDS             20822..21280
                     /locus_tag="PXE26_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593177.1"
                     /translation="MKKMIVFVASVLSSFVIASDWEIIEAAQNKVKAELIRKSEKKAE
                     LCLNVAQAVLITNQKVQKDTFSMCGEFSTEIVFSDSKAYSLAVCGKVKGKDIIGNPIE
                     SDYIYQRATKDFYFNYNGKKSAYYDPQSDLARLQEVSDSMFNAMQNRYCK"
     gene            21825..24320
                     /locus_tag="PXE26_000566"
     CDS             21825..24320
                     /locus_tag="PXE26_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail length tape measure family protein"
                     /protein_id="HDL5593178.1"
                     /translation="MSQAVFYLNNFKELFMTVEVGGVVITADLEFENLLRDTQKVDKA
                     MDDIGKSTLKAEKGLKGLETQATKTAIAVNQATNKMKNIRGVAGQLGYQIQDISIMLQ
                     MGSNASTVIAQQGSQILSIFGPMGAVAGAILAISGAIGGALLPSLFDSTDATELLAAA
                     QKNLSEVVTQTESGVSALSAKIIKLAKVSEDAAKAKIAVAMSDAKIAIKAAGDSSQKA
                     FEQFDGFFGSFTNSSQSIRNAIDELKRYESKGKDVGAVIKELGGTYGGAIAEVNALDS
                     VTSEMSKTLGITQSEALGLIKLLAQLEQDKSPDNIKLLAIALSDLSDKNGWANEELNK
                     LTRTINDNSVSALDAETSVRLLESAIKDLQNAIQNSQGALDGNVAKMNQLADAAERKA
                     ATIGKTERETAKYAATLLATTDEAKKNLDSTLSRIDASYDQIEAYQAEQKALQDKKTA
                     DAKAAREAEAAAKKSAQAKKQVVEQLRQMATQYEIAVLRQKGMHLEAVKLEAGMRLGA
                     AATKEQREEAEKLAQSIYGATAASQNFNAIQAQASPVTALDQRHQQQLAQIEEYKILY
                     PQKIMEAEAARAAIEEQYRQQRMEAQWEEWKQASDGARMFGDAVDAVGSSATSTITGL
                     LNGTMSVRDAFASIANTILNSVVQSLVEMGMAQVKQMIMGQTAAKASMAAQMVQAKAL
                     AASFAPAASMVSLATQGANAIPAQAAITSTMSMAQVAAVTGRKLGGPVSARQMYRVGE
                     NNQPEIFKASNGMQYMIPGQSGRVFSNKQSQGQGGGESKTVAVIVNQTNHFSSDEASA
                     NQAAVAKALSNQIKASVRLELQSQMRAGGVLAR"
     gene            24324..24653
                     /locus_tag="PXE26_000567"
     CDS             24324..24653
                     /locus_tag="PXE26_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5593179.1"
                     /translation="MQTFNFKVEQDYTVQNEPSVVILKFADGYEQTAPKGLNHNLKKY
                     QGITVKANKAEAVKIQQFLNAHGGYKKFNWRDRTSDETVTVRCRSWSSTKLGAVIEFT
                     LNFDEVI"
     gene            24653..25123
                     /locus_tag="PXE26_000568"
     CDS             24653..25123
                     /locus_tag="PXE26_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL5593180.1"
                     /translation="MPKAPPKKMASELIKLEQDALIELWEIDLTHIYSSSNPNQRGEI
                     FRFHNGVSQTQQNIWWQGNEYQAYPIAADGFEISGQGPSNRPTLTVSNLYGVVTVLVE
                     DFGQPVEAKVSSEETVDGNIQMTVELLKKMDQIADQRYRRNQLNDLRTGGTLSK"
     gene            25131..>25252
                     /locus_tag="PXE26_000569"
     CDS             25131..>25252
                     /locus_tag="PXE26_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL5593181.1"
                     /translation="MPISISNQMKLDLAKLEQNAMLDLYEVDLRKLQDKNGNAG"
BASE COUNT         7980 a         4733 c         5844 g         6695 t
ORIGIN      
        1 tgagtgtaga gccaccagct ttataaaaag cctctttcgt caaataattt gacttgattt
       61 ctcttacatc gccttcaact tgtcttaatc gagcatataa attcacttct tccgtctcct
      121 gataactaat ttgtgaatta ttatgcccgc cgtatactgc atttgcaagt aaggatagta
      181 tgattgcatc tctaggatca ttttgaatca ttggtctatt cattttgtga gcccttaatc
      241 cattctaaaa ttctctctct gtcgaaaaaa agcatattat tacagcaaac acaagtgaca
      301 ataacggctg ttctcgcttt ttggtctaac caatattttg ttccttcccg ttcattgaaa
      361 tgcaaagaat gaaattcagg agctgcaaat ttcataactt catcaggaga tggctctatt
      421 cggtatggaa tggttggaac accgataatt ttctctccgc ataattccgt aaaagtgtca
      481 tagccatcgt gtaaataatg ttcttggcta ttacaaatag ggcaagttaa attccgccca
      541 gtacgttgcg tgataaaatc cgcaaactgt tcaggtttaa tgcgtttatt attcatttta
      601 acttcctttc tacccaataa aattcaactg ttagctttgg tggactttac aaatagcttc
      661 tatgctcaac agcgacacca ataatacgaa tatcttgttt cattgagctg agtgttggaa
      721 agtcggggtt aagcggtatt agctcaaaat gaggattgcc ggattcagac cattcgccta
      781 actcccgata acgttttaaa gtagcctcac ctgtgccatt aaccgctgct acataatcgc
      841 ccgggtgagg acgtttgcga atatcgatta acaccagatc gccttcacta aatttaggct
      901 ccatcgacat tccggaaatt cttaaaaaga aagcgtccgg tccggcatca atttccgtat
      961 cgatatagtc gtagccctcc gaatctttga aatcaaaggc ttctgtccat aaacccgctt
     1021 gtatattgct gatcaacgga tatgagttcg attttgtcgg tctggcaagc tgaacgtttg
     1081 tatcaaaagc aagtgtttct ggagaaacac caagcacttt gctgagtatt tcaatatcat
     1141 caagatcggg agtacgattg tttctctcat aattagcaat gcgagattgc ccccatttgt
     1201 tatttttatc tcgattatct attgatgtac atctttcagc aacttcatat tggctgattc
     1261 ctagctgttc tctgtaagcc ttaattctac tacctaaggt tgtcatagca ctctcctatt
     1321 agattttcct cattttaaca cgctccgtta tatccttgtg aatcacaaaa tgaaatttac
     1381 aattagttca ttttgtgatt taattaaaag atataaatca caaagagaaa tttgtatgaa
     1441 taagatagct gaaatacgaa accaaattgg tataagtcaa gctcagttag ctgttcagat
     1501 tggttggggg caaccaagaa tagctaacta tgaaactgga aatcgtaccc catctattta
     1561 cgttgctcaa aaaattgttg agggattgaa cgaattaggt gcaaacgtac gaattgatga
     1621 cgttttcccc gttggcaact aatttacccc aagaggcttg caatgccacg caatgaatta
     1681 acaaaaaatg caagagcgat tgcggatttg attcatcgaa aatccgcaac ggtgacgcat
     1741 aagaaactag caagagcaat cggactgagt gaatcacaat ttagccgtac atttgcagat
     1801 aatgtggaaa tggtggcggt gattattgat tacttaagta ttgagcttgc ggataaagac
     1861 gagttactag agctgaaaga gaaacgatat aagcgaataa atctcgaaga agcgacaaca
     1921 tagaagttac caacaatgaa aaatttttta gaaaaattca aatcattcta ccacagtaaa
     1981 aattcaattt ttattagagt ggcaattttt atgctgcttg cgtggtgggt ttttaacaat
     2041 taaaaaacca ccgctggaac ggtggtaatt tacaaggagt taccttttga aaaatcaacg
     2101 caatgataca caaaaaagct ccttatggca agagtttgaa tatcgaaaac ggttaaaaaa
     2161 tctcattgaa agcggtttat ccgtagccga aattgaaacc cgttcacaac aaatttatga
     2221 ggagctgaaa agtgaatgca caaccgaagc aaattaaccc aattttaaaa ttgcacccta
     2281 aacaatcaga ggctaagaaa gtgagtgttg atgatggtta tacacaaatt ccgaatgagt
     2341 tattaaaagc aattttgcga tcgggtgttt taggttggaa aggctcttac ttactggcta
     2401 ccgtcttaaa aacattgtct tggcataaag aaagtgattg gttcacgcat tcccaagtgt
     2461 gtgaaatgat gaatattgag ccgacaaaat accatattaa tcaactttcc gctgctcgaa
     2521 aagaacttat ccgtgaaaat atcttgtttg aagatggtaa ggaaacaggg gtaaatctca
     2581 gtgtttttga atggaaaatg gtatatcccg aaaaagtagg gagttcccga aataataggg
     2641 aattaattcc cgaaaaagta gggaatgggt atcccgaaaa agtagggaac acaaaagaaa
     2701 ctattacaaa agaaaaaata aataatgaat ttactaacgt aaattctgtg caacagcccg
     2761 agacctcttt gccgaaaaaa acaaaatctg agccggtcga ttatcaagga gtgatggaag
     2821 aatttaatcg tgctgtggaa gacacaccga ttccgcaaat tcgggcgatg agtgatgagc
     2881 gaaagcgatc ggttcacgca ttagcaaaaa tcttgcgaaa agaatttggt ggctacacca
     2941 gacaacactt tgccgattac ttcaatgatt ttgtccgaca ggcaagtagc cggaaagaca
     3001 gattttattt tggcgggctt gatggctcgg cttgggtagc aaatttcggc tgcatcattc
     3061 gttcgaaaac gttttataag acttgggaag attcgctatg agccaaaatt tgaaaaatat
     3121 cacttacgag gttgaatatt tgctggttgg agcattgctg aaatccggtc ttaactcgaa
     3181 agctagggac gtattgagct ggttagagcc tgaaatgttc gctacctttc aacttggggt
     3241 gatttatgag gctatccgca agcaggcgtt gaaagataac gtgatcgata tgctgttact
     3301 caataccgac tacggacaag attttgccac gttggcagag ataatgaaaa acacgatcag
     3361 cggtgcaaac ttagacggct atgcagaaaa agtccggcaa tatcatcaac gccgagaagc
     3421 ccagcgagtg tttttagacg ttgcaggtga gttgcaaaat gcccgagacg agcagttaga
     3481 tgctatcact tcaaccgggt tagctcacct aagcaaatta ttacaacgtg gcggaaaagt
     3541 gaaaccgatt gatatgaatg atttgctcga aggttatttg gaattgttcc aagaacgtgc
     3601 aaaaccaagt tttaaagagc gtttgttgtt taccggtata gaagcattag atgggaaact
     3661 aggcggtatt aacgataccg atatttgcat tgtagcagga cgtgccggta acggtaaaac
     3721 cgaaacagcc atcacgttta ctaaaaacat tatcgagaat aaaggttcgg tgctgttctt
     3781 ctcgctggag atgagcaaag agcagattat ggataggctg attgccagtg caagcggtgt
     3841 aaattcagta aaacttcgca atccggaaat gatgaatgat gaagattttg cccgaatggg
     3901 aacggcgatt cagcctttac aaaatcagca gttgtacatt gttgataaaa gcggattaac
     3961 cgcagaagag attgtggcga ttgcagagag ccatattcaa gagtacggca aagtgagtgc
     4021 ggtagtgatt gattatatcg gtttggttcg acacggcaaa ctagacggca aaattaaccg
     4081 aacctatcaa atcggtgaaa gtatggagcg gtttaaaact ttctgcaaaa acaatcacac
     4141 accgatgatt ttattggcac agcttaaccg caatgcagat ggcagtcgcc caaccaacgc
     4201 agatttgcga gacagtggca gtcttgaaca agatgcaagc caaatcatta tggtgcataa
     4261 ccaacgcaac aaagacggcg agccagcccc ctatacagaa tggattgtta ctaaaaatcg
     4321 ctttggagca aatggcacgg tttatatgca attccagcag ggtaggttcg tagaatgcga
     4381 ccaggcagaa gcgcgggagt atttccagcc gaaagaaact aaaacatcat caaacaaacg
     4441 ctatggagca atgcaatgac agattttgat aaaaatataa aatacaaaat tatttacgca
     4501 gatccgcctt ggaagtataa ggatagtggc tgtaatggga gtgcagaaaa ccattacaca
     4561 acaatgaata tcaaagaaat atgtgattta cccgtccaag atatttcaga caaagattct
     4621 attctgtttt tgtgggttac ttaccctatg ttacctgagg gcttaaagtt gattgaggcg
     4681 tgggggttca actataaaac aatagggttt caatgggtga agacaaataa gaagaataag
     4741 aattcttttt tctttggctt gggacgatgg actagaggta ataccgaatg ctgtttaatt
     4801 gcaacaaaag gaaagccatc gagggtaagc aataaagtga gccaattaat tattgagcca
     4861 atacaacatc atagtaaaaa gcctgacatt gtcagagaaa agatagttga gttgatgggt
     4921 gacttgccaa gaatagagtt gttcgccaga aataaaaccc aaggttggga tgtttggggg
     4981 gatgaggtgt gattgtttca agctattgtt acccaaagtg cggtagggtt ttattaaaaa
     5041 ggttggcggt tgtgaaggat aacgaaggtt gggacggttt agatgattac ttataaatgc
     5101 cccaaatgca acggagagct tgaagattta agtattaatg atgaatgggg ttggttttta
     5161 gatgagccgt atcgttgcaa cggacactat acagggcggt ttccaaacat tagccgagat
     5221 agcacgttaa atcgcacaaa atcctgtggg tactttagca aggaagaggt taagaaagta
     5281 aatggcacac agcgttaatg acatcgtaaa agcccacggc aggcgttata aagcaagatt
     5341 gaaaatacag atgataaaaa tgcaaggagg cgttttagtc ccccttaatg agcgtgaagc
     5401 tgaagcattg gtatcactta aaaatggcga gcaatatgaa attgaggtta ttcgcactcg
     5461 caatccagcc tttcatcgga aggtcttcgt ctttttaaat ttttgctttg aatattggtc
     5521 ggcagacaaa accgaatggg agttttttga tgagaggaaa cagtttgata ctttccgaaa
     5581 aaatctgact gttctggcag gatttaaaga aatcacatac accctagatg ggcgtatgcg
     5641 tgtagaagct caaagtctta gttacggaaa tatggaacaa gacgagttcg agcaggttta
     5701 caaagcattg attaatgcag ctatcaagca cgttttcaac aataccaaag atgagaatag
     5761 gataaatcag ttgtattcgt ttttttaatt aaggcgaaat cgccatattt aattaggttt
     5821 aattgcagga gattaaaatg aaaaagaatg ttattagata ttggcttagc gtgccattca
     5881 gaattattgc agtgcttttt ttcttagtca ttcttactgt tagatatgta ggttatttat
     5941 tgatttatcc attagcattc tttgcagcag tcggtagttt tattgttttc tgtcaatgga
     6001 catatcaaga atggctttat tattttaagc gcggttttgc tccgatttag tgtgtgttta
     6061 ttaattccct cgaattcggg ggaaggagaa gtaagatgac aaaatttttt gaaactatcg
     6121 cattcgtgat gttatttggc attattccaa gctgtttgtt ggcgattaat actactttaa
     6181 tgaatatgaa tattaaaaac gcaccgtggt ttatggtgat tattcagtta ggttttaata
     6241 tcacttgtta ttggttgtgg tttatttctg ttatgcggaa tgttatttaa ggagattaat
     6301 aagtgagcca gtgcaatgaa ctgactgtaa ttttaatcgc catcgctatt cttagtgtat
     6361 gtgccggttc actctttttt attgagtggt ttgataagag agatggtgag ggttggaatg
     6421 gctaacaaac cacctaaaca acacaaatgc aaagagtgcg gcagttatta catcaaattt
     6481 caaagcacgc agcaggtctg ctctgttaag tgtgctatgg caatgggtaa gcgtaagaca
     6541 gaggcgaaac gcaaaaaaag tgcaaaaatc gaccgcttgg agcaacggaa gcggctggaa
     6601 aaattgaaaa gccgtagaga ttttgagaaa gatttacaaa agatatttaa taaattcatt
     6661 cgcttgcgtg ataaagattt accctgtatt tcctgtggcc gctatcatca ggggaaatat
     6721 gatgcagggc attataaaac cgttggtggt aatcctgagc tacgttttaa tgaagataat
     6781 tgccacagtc aatgtgtgcc gtgtaaccga catctgcacg gcaatattgt gaattatcga
     6841 gtaaatctga ttgagaaaat cgggcttgag cgtgtggaat ttttagagcg taaagaccac
     6901 ccaccattaa aacttactat cgaacaaatc aaagatttaa tcaaagtcta taaagcgaag
     6961 tgcaaggagc ttgagcgtgt tacctagaaa aattaaaaac aagtggttag agcctgaaaa
     7021 gcagaaatgg atcgaagagt tgctaaggtt atggggggcg tgggaatttg gcggattgga
     7081 tttagaaagt cgggtaaata tgatttaccg gctgatgaaa tctgcggagg gggttaaaag
     7141 tctttcatct agagaggttt gtaacgatag cctcggcacg ctgatcaatg agatttttac
     7201 ggtagtcacc aaaagagacg taatgttagc cgatatactc aaacaaaaat actggttcgg
     7261 gcgttcggag cggcaaatcg ctatttatta tcaactaagg gacagcgagg gtagaaaaga
     7321 aagacgatgg caagaaatta ttcaagataa atgcaaaaaa gcggaaagaa ttattgcaga
     7381 tattcttgaa agcaagattt catccagtaa ttctacagat aaactgaaaa aatatcaatt
     7441 ttccccttga ttttagtgcg taacaagtgt atattttgtg ctaatggtgg acgtagtata
     7501 aatgatgttt accaatgtta gttaaagacg cagcctgaag taatattcag ttcggaggag
     7561 aataactaga aacgacgtcg agtatagtta tttcagcgtt tgcgtggcag tatgccgacc
     7621 gaattagttt aacagccctg agcagaaatg cttggggctt ttttgtttac ggattttaag
     7681 ggtgtagctc agttggtaga gcagcggtct ccaaaatcgt tggttgttgg tttgagtcca
     7741 accacccttt ccaaatgcga gtaaatgtta tgtataacct tgatgatgca attcaagaat
     7801 gcagagaaaa atttggtgaa gataagcctt atttttctga agctggaaca cttacttttg
     7861 ctggttgcaa agccctctct cgattaagag atgaaaagtt aggaattaag gctccgccaa
     7921 atttcccttt cccaagggtt gaagatctat cttagctaca aaaatcaatg agggattgct
     7981 atgacggaac aactaaatac tcagtcaaaa agcggtgaag aagatcaaga aaaatctcaa
     8041 gatcgctatg ccgtgggctg gccatctcga cgtatatcag attgcgttca gcacttccga
     8101 agtaggaaaa tttatccatt tgccagtaat aatgacgtga agcaaggtta aatgcttctg
     8161 gtggtacaga gtaaattcaa tcatttttac cctctgctag tttatttgtt ggggaacagt
     8221 attctagcag aatttttaac caaagctcag tctcacgact gggctttttt attgcctcga
     8281 aacggggtgg agtatgaagt taatgaaaga tatgggaacg cagagctata tttggtcggg
     8341 atttagcact tggctggcgt ggctcggcga acagcagaat ttaatgttac ttagtcttgc
     8401 tatcggtatt gttactgcca ttgcagggct tattcagcga tttgatgaat ggcgtaggcg
     8461 taagcgtgaa gatgagcgag cggaagagct tcatcaagcg aaaatggcaa gattgagaaa
     8521 ggggttaagt gatgagtaaa agccttaaat atggcagtgg tatcgtttgt ggtatcgctg
     8581 ccattattac attagtccaa tatcaacatc ccgaaatccg cactaaccaa gctggattag
     8641 agattatcgg taatgctgag ggttgcagac gtgatccgta taaatgccct gccgatgtaa
     8701 tcacggttgg cattggctca acggagtttg gcggtgaaaa gattgaccca aatcgtattt
     8761 attctgacaa agaaattgct gagcgttggg caaaagattt gaagattgcg gagagttgtg
     8821 tcaatcgtca ttttaatggt aaagacatga acgataatca attttcggga atgacgtccg
     8881 ctgtatttaa tatgggttgt tataacatga gattttatcg gaataaacaa ggtcaatatg
     8941 tgcagactac catccataaa ctcgcagtga ataaacaatt tgaggagatg tgtcatcgac
     9001 tacctgactt tattcgtgcc agtggtaagg tattgaacgg attggttatc cgccgtgaaa
     9061 aggagaaagc attatgctta actggattag tggcacgata gccattgtga ttttgggctt
     9121 gtgtgtatgg ttatggggtc agtcacagat gatagatagc ttaagagctg agaaccgcgc
     9181 acaagcccaa accattgagc agcagcaaaa agccaatcaa cggctaaccg atagcttaga
     9241 gcaagagcga caagcggtcg aaaaaatcca aaaaattgca aatgagctgc ggaataaagt
     9301 ggagatggcc aagaatgaaa ttacatcaat actggcacaa gacagttgtg ctaaagctga
     9361 tttgcctaat ggcgttgctg atagcattaa gcggctgcac cagcagaaca atcacaagca
     9421 ctgagtattt gtatccgccg gcagcttacc ttgtgccgtg tgggcgaaca gaatttagcg
     9481 gtagaaccta tggcgatacg gttgagtatc tcgtcaaagt gatgggagag cgtgatttgt
     9541 gtgctaatca aattgaccgt atcagagaat ggcaagcaca aaccaaacaa gggtttaaat
     9601 agctaattat ctaattaacc gctattgaaa atgggagcgt aacagctccc tttttgtttt
     9661 gatggaaagt aaatattaca taatttagct atggtttcgg ggttggttgg ataaaacacc
     9721 gaggaaatac ctaagtgatg tgatttatat aaaacaaaac cccgaacatt tgcggtgttc
     9781 gaggtttttt tattacccat tgaaacggaa tgagtaacaa gttatggaaa ttattacatt
     9841 tttaaccgta accatcaagg agattcttat ggaatatggt ttatggcaaa taagcctagc
     9901 agtaacagtc cctattttgg cgttcgtgtc gccaaagctg attaatgcta ttgctaatct
     9961 attaaatgca atgaagtaaa ggaatttaac ccaatgacta aaaaaggcga ggttaaagcc
    10021 acgtctaaag gcgtgggtaa attaaccgat aaacagaaac gatttgtaga agagtatctg
    10081 attgacttga atgcgactca agctgcgatt agagctgggt acagcgaaaa aacagcatac
    10141 tcaatcggag aagagaacct gagaaaacct gaaatcagaa gtgcaattca ggaggctcaa
    10201 aataaacgct cggagagaac ccaaattaca caagatgatg tgctaaatgg gttgcttgaa
    10261 gtgattgcaa tgagtactgg taaaaaaatt gtgacagaaa ctgatgttgc aaaaaatgac
    10321 aatggtgagt tggtcggttt tgatattgca aaaacaaaat tcgaacctgc cgccgcaaat
    10381 aaagctcttg agttactcgg taaacattta ggaatgttta aagacaaggt tgatttaatt
    10441 aattctgatg gttcactgaa tcgaccgatg gtgattgaat taattgctcc gagtttagac
    10501 gatgaaagca cagattgaac taccacctaa actgttgcct gtttttgcca aagattatcg
    10561 ttacaaaggt gcttatggtg ggcgaggttc aggcaagact cgggcatttg ccaaaatgtc
    10621 ggcagtgtct gcttataaaa gagcaatgcg aggggaaagt ggcgttattc tttgcggtcg
    10681 tgagtttatg aactcattgg aagaaagctc tcttgaagaa gttaaacagg cgatcaagtc
    10741 tgagcctttt ttagcaaatt tttttgatgt cggcgagaag tatgttcgca ctaaagatgg
    10801 gcggatttct tatgtgtttt ccggacttcg gcataactta gatagcatca aatctaaagc
    10861 ccgtattttg attgcgtgga tagatgaagc agaaacagta agcgaaactg cttggcggaa
    10921 attaattcca accgtgcgtg agaataattc cgaaatatgg gtaacttgga acccggaaaa
    10981 tagagggagc gcaacagata ctcgcttcag gcaaaatcca cctgaaaaca gctgcataat
    11041 tgaaatgagt taccaagata atccttggtt tcctgatgtg ctcgagcaag agcggctaaa
    11101 tgacaaacag cggcttgatg atgcgactta tcgctggatt tgggaaggtg cttatttgga
    11161 agcgagcgaa gcgcaaatct ttcgcggtaa atatcaagaa atggaatttg tgccgaaccc
    11221 tgattttgat ggcccatatt acggcttaga ttttggtttc gcgcaagatc cgacggcggc
    11281 ggtcaaatgc tgggtattta atggcgatct gtacatcgag tttgaagcag gcaaagtggg
    11341 cttagaactt gacgacaccg cagactttat tgccaaaggc gtgccacaaa ttgccgatca
    11401 cgttgtgcgt gcagattcgg cgcgtcctga gtcaattagt tacctcaaac gtcacggctt
    11461 accgcgcatt atcggtgtgg agaagtggaa aggctcggtg gaagacggca ttgagcatat
    11521 taagtcctac ggcaaagtct ttattcaccc acgctgtcag caaacgctca acgaatttcg
    11581 cctttattcg tacaaaaccg accgcttatc gggcgatgta ttgcctgtcg tgattgatgc
    11641 ccataaccac tttattgatg cgctacgcta cgcattaacg ccgttgatgc aagttaaaag
    11701 tgccaaagga gttttactat gagcctagag caagacagac tggctttttt agccgaagcc
    11761 ctagggcttg gcaatatcaa acgaagaacg ttatggaagg agtttggcta ccctaatacc
    11821 ttaacattca accatttctt aaaagcctat aagcgcaata gtatcgcttt tgcagcgatt
    11881 aaccgcttac ttgacggttg ttgggttgac tgccccgtaa tcgttgaggg tgagcaaaag
    11941 aacgaatcaa agcagacaac cgaatgggag tccaaagttg aacgttttat gaaacgctac
    12001 tggtcggcaa tcaaagaggc agatagacga aaccttgtcg gtaactattc ggcgttatta
    12061 cttcaagtaa gagatggtca acaatgggat cagcctattt tgcaaggcgc gctatctagc
    12121 attggagagt tcggactggt taaactgatc cccgtgtggc agtcacagct ttcagtgaca
    12181 gagtttcaag aggatgtgac cgccgataat tacggcgaac cgctgatgta tcaattcagc
    12241 gaatctgcct ttggcaaaaa aagcgtgtca cgaaatatca aggttcacgc aagtcgtgta
    12301 attttgctca atgagggtgg cgactttaat tcccctcatt ctggagttcc tctgcttgag
    12361 gcgggttaca acaagctagt tgatctcgaa aaaacatcgg gcggcagcgc cgaaggtttt
    12421 ctgaaaaacg caagccgaca attagggatc aaattaacaa aagatgttga tttgagacag
    12481 ctcgaagaca gcgcaaaagc ccttgggttt tcttcatttt ctgatgcgtt gaacgacaag
    12541 atcaagaaaa tcaactcagg aacagactca gccttgatta ctcacgaagg tgatgcctct
    12601 gtgttgtcag tcgcaccagc agatccgaag ccaacgtggg aaatttctgc aaatgagttt
    12661 gccgcctcag tacaaatccc tttcacgatt ttgttcggac agcaaacagg gcgattggca
    12721 agtgacgagg acaaaaccga ctgggcaaac cgttgcaacg gtcgtcgaaa tggttttctc
    12781 accgatgtga taacacaact acttaatcgc ttgtggttca tcggtgtgct acctatgcca
    12841 aaaaatagcg atgtcacagt gtcttggtct gacttacttg caccaagcga aaaagagaaa
    12901 atcgcaaacg cacaggcttt ggcttcagtt gcaactacat cgcagtctgc ctttggtttt
    12961 gccgcggtaa cagcgaacga aatccgcgaa tctttagggt ttgaacctct gcctgataat
    13021 ctgattccgc caacaattga cgacgaaaat gaagatcaag acgaaaatca agccactgcg
    13081 gattccgaca aataaagccg atccgctcaa tatgggagtg tcggttgcca agctatttcg
    13141 tcacattgat gtcatttact cacaaattaa gcgctccatt aagcaacaaa tcttgcaaaa
    13201 gatgtcactg cgactgcaag caaataattt tgagtatttt ccttcgtatc ttactgcgac
    13261 tgagttggcg gatttgcttg aaaccttgca aaagattatc gacaaagaga ttttgtcgaa
    13321 tggttctcaa ggcgaaaatc tctggtttga ctcctatatc gacgaagcag cactaaaagg
    13381 cactcagtct gcggtcactg atttaggtct gcaatcagag gcttatcgca gtcagcgaaa
    13441 cttatcatca atcgttttca gtcctgcgta cttcaaccga ttggcgattg cacacatggc
    13501 aagttatagc gagtggcaag gtttaagcga cgagttgcga aaatctttgg cgggggtgat
    13561 cacggaggcg gttttaaacg gcaaaaacgt gaaagaaact gcccgtgaga ttcggcaaaa
    13621 acttgatgtg tcatcaaaac gggcgaagcg aatagcgcaa tcaagccagt tggcggcata
    13681 tcgtcgggca gaatggcaag aggcggaaga ggcaaaagaa gaacttgggc taaacaccaa
    13741 gctcttacat ttttcagcgc tcaaagctac tacgcgatta gcacacgccc aacgccacgg
    13801 caaatacttc gatgttgcag aggtgcgcga atggtatagc cgagacggca accaattcaa
    13861 ctgttactgc aagcagtctg tggttgtggt caacgccgac ggtaaaacag atattgagcc
    13921 tctccttgtt gggttggcta aagaacgtaa acaatgggta ggagcattaa aaaatgtcaa
    13981 aaaataacgt gaacatcgtc accgtcatta acagcaaaaa tatcagcaca gaatctattg
    14041 acggagatca acacctgatt atccgcggcg ttgtgccgat tgttgatgat gttgtgatga
    14101 acgacggact ttatcctgcg gatgaaatca ataaaagcta caacagctta gagggcaact
    14161 ttatgccgct tgggcatcca aaaatcgaag gtaaatacgt ttcagcccaa gatgttcgag
    14221 cggtgaacaa acatcacgtc ggtgcgtggg cgaagaacgt acgcaaggaa agtggcaaag
    14281 tgctggtcga tatgtatatc aaccgccgct ttgcggaagg ttcagaacag ggcaaaacct
    14341 tgcttgaacg acttgacgga atggtgacaa acaccaacgc tgaacctatt cacgtttcca
    14401 cagggctgat tctaaacaaa gtcaagcaat cgggtaaatc caaaggcaag aaatatagct
    14461 ggattgcgac aaatatgtcg ttcgatcata ttgcaatatt gcttgatgtg ccgggcgcgg
    14521 cgacacctga tgatggcgtg gggatttttg taaaccaaga cggaagcgaa atgggggtgg
    14581 aaaatgtaaa cctaacacaa gcggcggatt accgcacaga aaagctgttt gacaaagtac
    14641 gattttacct gatggcgaac tcagatttat cgtttgaaga aattcatcgc gcgctgcgtg
    14701 aagctattcg ccccgaaggc aaagataagt ggtcattttg ggtcgaagct gtttacccga
    14761 aatacttcat ctattcggac gataacagcg gcaagaaata caagcggagc tattttattg
    14821 acgaaaatga caatgtgcag ctcactagcg aacctgtcga agttgtcaag aagattggct
    14881 acgaagaaat tacaaccaat gaggaacata atccaatgaa aaccaaaatc ttagccgtgt
    14941 tgaatgcggc aaacgtgaaa acggaaggct taaatgacga tcagctcttg gaagcctaca
    15001 acaagctgca agcggataag ggtaaagagc ctgaaaagcc taaaaatgaa gatgacagcg
    15061 aaattgatga gaaaatcaag aaagcagtca atgccgcgat tgagccactc cagcaagcct
    15121 tgcaagctaa tactgacaaa gagcaagcag caatgcgtgc ggcggtgaaa gccaagttca
    15181 atatgagcga tgccgcagtc aatgctttgc aaggcgaggt attaactgag ttgtatgcgc
    15241 aaacgcaaca atcggtcgga ttaaacaata attcggcaaa cggcaacggc gacaatcaat
    15301 gggatggtta ctcactcaac caagaggaga aaggcaatga gtaatgtaat ttatcgcggt
    15361 tcggtcaagc gtgaacctca aacggtgaat atcgtgatca acgatacttc ggcaccgggt
    15421 gcagtagtta aactccacaa cggcaaatta gaggcggcgg ctgatttaaa aggtcgccgt
    15481 tttttattgg gcaacaaccg ctttaagggg cagacaatcg aacaagcgta tgcgaagggc
    15541 gatactgcaa cggcgtttcg tttagagcct gaacaggagt attacgcgca aattgccgac
    15601 ggcacttata actttggcga tgaactcacg gtaaaacaag cgggcggcaa actgaccaaa
    15661 gcggagacgg gcgatgtagt gctatttttc ttcgacgaag aatcgcagcg tgtaatcagt
    15721 ggcggcaaag gctatgccga tgtcgtggtg gcaaacgcct acactaaata agaggtaaca
    15781 aagcaatgtt gaaattcaca aaagaacaag aacgcttcgt gattaacgag cggatcaatt
    15841 acgacaaaaa acacgcgcta atggcagcaa attcggcggg gttattgggc aacgcgatga
    15901 ctttgccgaa agatgtctgg gcggaatggg atcgtgatgc agtgcaaatt cagcgcgaag
    15961 aattggtggt gtttaacgat ttagcgggca tttcaaaatc aatgccgatt ggcaaactta
    16021 ttcaccattt ccaaacggta tctgatagcg gttcggttaa tatctcatta gacggtcgtt
    16081 catcagcgaa aaccgataac gtggtgctta actaccacgg tacaccgttg ccgattattg
    16141 attccacttt ctcttttggc tggcgcgata tgtcggcagc tcaaagcgaa gggtatcaga
    16201 tcgacggtgc agcacgcgcg aacagtctcc gcaaggtggc tgaaaaaatg gaagatctcg
    16261 ctttaaatgg tgattcctct attgtggttg gcaatgccaa gctttacggc ttgcgtactg
    16321 cgccaaatcg tatgactaac acacacaatc tggatttagc cactgcgaca ccgaaagaaa
    16381 tttacgatgt gttccgtgac ttgattagca aattccacgc gaagaactac tactctcctg
    16441 taacgcttta tgtgaactat ggcgactatt tcgcaatgag tacacgtgat tactccgagc
    16501 agaaatccga aggatctatc ttgaacaaag tgatgacgat tccgcaaatt gcgaaaatcg
    16561 tgccagcaag ccgtgtaccg caaaatgaaa ttctcggctt gtgcaagcgt tcggatgtgt
    16621 accaagtgct taacggtatg ccgttagtga ctcgtccgat tgcgcgccat aatgaaaccg
    16681 atgattactc gttccaaatt atggcagccg ttgccgtgga gttcaaattc gacgataaag
    16741 gcaatgctgg ctatatccag tacactaaat cctaaggcgg tgcaaaatga agtggctatt
    16801 aacacacgat agccacgagt tgaagaaagg cgatgtttac gaaggcgaaa cattaccgct
    16861 ttggcttgtg ggcaaagcta tcgaaatcga agaaaaatcc tttgaagttg caacgccttc
    16921 tgatcacgct gacggcgaaa ctggcgaaac tggcgaaact ggtcagaaag gcaaaaaaga
    16981 taaaggcaaa taactatggc agcagaaata gagctatccg aagcgcgaac aacgcttgac
    17041 gaactgggtt tcacttcgcc gaactctctg cttgagcttt acgttcagca aacgaacacc
    17101 ttagaccagg cgttgaacaa atcggggtac agcgaagaaa cacagaaact gatcaagctc
    17161 tatctggttg ctattcttgc aatttcatct ggggcgcgcc gtataaagtc agaaggtgcg
    17221 cctagcggtg caagccgaac gtttgagtat gatccaaacg cgctagacaa ccttaagtcg
    17281 gcgattcgct caattgatcc gaaaggttgc gctgaaagtt tgctacccaa agataaagtt
    17341 gtcggctttt tcgatgtggt cggaggctgc taatgtcaaa tttatcgaat tggtcctaca
    17401 ccgcaaaagc cacgctttgg caggctaaag gaaagaacga tgacggcgtt ttagtttttt
    17461 ctacgccaca aatcatttcc tgtgactacg gtgcagatag aaagcgcgca cgttttgaga
    17521 ttgggcgtga acaagcggtc aaaaatgtga tctggacgga gttcgcccac gccaaattag
    17581 gcgattatgt tctgattggc gaaagcgagc aagccgatcc gattttggct ggcgcagagg
    17641 aaattattca tatacagcgc tttgctgata cgttcgaccg caatcgtgat gattttgcgc
    17701 tgataacagg cgggtaaaat ggggatcaaa gtaaaaggca taagacaggt caagcagcgg
    17761 ctgaatcagg ttgttggcga ggttcagagc caaaaagcaa ctcgggcaat gtttcgcatt
    17821 ttgaatgcgg ttgcccctct tgcggcgcac tatacgcctg ttgatacctc aacgttgatc
    17881 aacagtcaat tcactgaaat ggaagtgaac ggcacacgct tgattggaag agtgggttat
    17941 tctgctaatt atgcggctta cgttcacgat cctaatatca agcaaaactt ccgcaagcct
    18001 tcagcgaaga aagagttttt gacttccgcg ctgaacgaat caaaggctac gatcaaatcc
    18061 attgttaaag aggagttgtc actatgattt cttatgtcaa agccttcaaa caatggttag
    18121 aggctcactc tcttgcagac ggctatgttg tgcagcttta ccagtgggag gatacgcaaa
    18181 aagccaagcc tgttattgtt attcagccaa atagtggttc gccgcaagtt tctgacctga
    18241 gcagcgaaca ctatctgcta attagccttg ttgcaggtaa aaattcaggt tacacaatcg
    18301 aagagcgagc aagggcgatt atgtcaaaga ttttagttga gcctttcgct tcctttggtt
    18361 acatcgaatc aatgggcgga ttacccgccc caattttcac cgaagataat cgaatgattt
    18421 ttcgcttacc acttcggatt atttcaacaa atcaagagga gtagtttatg ggttctccat
    18481 ctccacaaaa taacgcagaa aatctcgtgg tggggcgtgc cgtagtttta gagtacggta
    18541 cgactgatgc aaagccacaa gaaagcgaat ggaaggttgc gggcgcaatg acgacaaaga
    18601 gttgggattt tagcccaaat tcggttacat cagaggctga tgatgctggc ggcttccctg
    18661 aaaccttaat tacaaactca gactttagta tttctggtga cggtgagtgg cgcaaacgac
    18721 caaaatcgaa agaactaggc atcaaagatc tagttgtgtt atacgcaaat gcggtaaaaa
    18781 atcgcaccca accttacatt tgggttcgtt tgaaatacgc aggcttaaca attctcggaa
    18841 aaatggttat cactgcatta agtagcgaag ccccaaccaa tgacttagtg aaattctcta
    18901 tagagttcaa ggttggcgat tcaagcacta tcgaaattgc tgcagcgtaa aaaatcccac
    18961 cctctataac aagagcggtg ggattatcat tatcctaggg atagttgtag gggctttcct
    19021 aagctagcca aaatacgacc aatagtgtcg atttttgtaa tatggcgagg ggctaaaatt
    19081 cgctgtactt ctggcggacg gatattagtt aatcgggcaa tttctgcctt gcttaccgct
    19141 tgttcttgca ttgtattatg caaaagcact tttgcgtaga tgctctctgg cataaacaca
    19201 ggcacttcgt cggtatttac tgggcgagtg agcggaaagc gtctatcttc atcgaaataa
    19261 atttcaacac aagatagtag cacgtcttct gccatttcca ttgcttcttc aaatgtatcg
    19321 ccttgggtga tagcttctgg caaatcagga aatgtcacta caaagccccc ttcttcagcg
    19381 ggggtaaata acgctggata aaacatattt tctccttatt caagggtgta gtgaaagccc
    19441 cttaacatca ggggctttat attattttaa gcctagttgc tttttaaccc cttccactaa
    19501 gcctgttttt aactcttggc ttgggtgttt ggggaggtgg cttcttttgc ccttgtagta
    19561 gagtttcaaa tgctttgatc cattttcaac ctctacccca ttagccttta gccaccttag
    19621 gaattcgctt tgcttcacta cctcctccta tttgtttaac ttgggttcat tatatgcaaa
    19681 aatgctaact ttgtcaacag aaagttagca aaaatgctaa tttttttgtt gaggtgaaaa
    19741 tggttagcta tccaattact gaaattggtg aaatgcttat tgcaaccgat gggcgagact
    19801 ttttattcag accgagtttc aaaaatatct acaaaattgg aagcccacaa gaaattgtaa
    19861 aaatctatgc actattgcac ggctgtgaga ttcgagagat attgccgcac attttaacca
    19921 aatcggagtc tcatcaatct tacttttggt cagtgctgaa ttcgcctgtt tttggcagaa
    19981 aaattctgca aaacgcaatg atcgtgatgt cgtgctgttg cgatgatgat atttccctgt
    20041 tgattggcga gtggttgccg tcaaagtctg gcgttaggta caagttgggt aaaatgccac
    20101 ctgagacaat tatcaatttt gcaaaaaatt taatgggtca cggagtgatt ggttgctgcg
    20161 aattgccaaa gaaagaacaa tctgcaaaaa atgaattttc agaaagtttt gatgctgttg
    20221 agtacataag tttagcccga actcatttca atatgagccg cgaagacgct gaaaatctca
    20281 cgatgaccga attgcagcaa cttctaaaaa gtcaaatgcc tgccgaaaat aatagctatg
    20341 gacagttcac cgaagaagag tacgacagaa ttatggcgga atatgagaaa agaagagcgg
    20401 cttaaatagc cgctaacatt taaaagaacc tacctgatag aacgggagtg aaatccttgt
    20461 aatgtgctga ataaaaaagc tctcttatgt cattgagtag ctcaaattca tctttggatc
    20521 ttgcgttgca gattgccaca tagtcatcta cgcaggataa aatacgttca atactgactt
    20581 cttttatcca gcatacttct tggttttcat tcagccagtt ggcaaagtct tgtttagtgc
    20641 agtctttttt cataagttct cctttttgat tatttgcaaa aaaaatcata tcaaatcatc
    20701 cgttgttatc tattggcgaa aataattttt gcgacacaga tcgcaaaaat aggttttgac
    20761 ggtggaaaaa cgaatcttaa ttcgtagaat ggtaaaattt ctttattttt aaggtatttt
    20821 tatgaaaaaa atgattgttt ttgtagcttc tgttttgtca tcttttgtta ttgcatcgga
    20881 ttgggaaata atagaagcgg ctcaaaataa ggtgaaagca gagcttataa gaaaatcaga
    20941 aaaaaaagca gagttatgtt taaatgttgc tcaggctgtc ttaattacta atcaaaaagt
    21001 acaaaaagat actttctcaa tgtgtggtga attttcgaca gagattgtct tttctgactc
    21061 taaagcatat agccttgcag tatgtggaaa ggttaaaggt aaagatatta tcggaaatcc
    21121 gatagagagc gactatatat accaaagagc aactaaggat ttttacttta attataatgg
    21181 caaaaaatca gcttattatg atcctcaatc tgatcttgca aggcttcaag aggtctcaga
    21241 ctctatgttt aatgctatgc aaaatagata ttgtaagtga tgcttgcatt ggtttttaaa
    21301 tatttaactc aaataattta tgtgttttta gtttaatagg gcgatttatg gatgtaaagg
    21361 taattaacgt cttactaatt attctttttt cagcaattgt aataggttta ttcctttttc
    21421 aagaatcaag attaagagat ccaaacaacc attcagtgat atatttagag cagattcaag
    21481 aaatgtgcag cttagataaa ataggctcat accagattga ttttgtacga caaagtggga
    21541 atgagtacaa agagagtatt cttgttaatg attttgagtt agcaataaaa accgtattat
    21601 ccacgttaag aagggcaaaa atagatagtg tgccagtaat atctaacaca cttatttatt
    21661 atccaccgag ctttctacaa cgcaagaggt agtcaagaag gaaagaaatt aggatcgata
    21721 aggattgcaa aaatttaatg taacaaaaat atagattaaa ttgtatttaa ccaatctatt
    21781 gctagataaa ttgtaaaaaa atcacagaaa taaccgcttg tgctatgtca caagcggttt
    21841 tttatttaaa taattttaag gaattgttta tgacggtcga agttggcgga gttgtaatta
    21901 ccgcagatct agaatttgaa aatctgctaa gagatactca aaaagttgat aaagcgatgg
    21961 atgacatcgg aaaatcaaca ttaaaagcag aaaaagggct gaaagggcta gaaacgcagg
    22021 caaccaaaac ggcgatagca gtaaatcaag ccacaaacaa aatgaaaaat atccgtggag
    22081 tagcaggtca acttggttat caaattcaag acatctcaat aatgcttcaa atgggttcta
    22141 acgcttcaac cgttattgct cagcaagggt cgcaaatctt aagtattttc ggtccaatgg
    22201 gagctgttgc aggggcgatc ttagctatta gtggtgctat tggtggggcg ttactcccta
    22261 gtttgtttga ttcaactgat gcaactgagc ttttggcagc agctcaaaaa aatctcagcg
    22321 aagtagttac tcaaacggaa agtggtgttt ccgccctttc tgcgaaaatc attaaattag
    22381 caaaagtaag cgaagatgca gcaaaagcaa aaattgcagt agctatgagt gatgcaaaaa
    22441 tagctattaa ggcagcaggg gattcatcac aaaaggcatt tgagcaattt gacggctttt
    22501 ttggatcgtt tacaaattca agtcaaagta ttcggaacgc aattgacgaa ttaaaacgct
    22561 atgaatcaaa aggtaaagat gttggtgccg taataaaaga acttggaggc acatatggtg
    22621 gtgcaattgc cgaagttaat gcgctggatt ctgtgacaag cgaaatgtct aaaacgcttg
    22681 gtattactca atctgaggct cttggtttga taaaactgtt ggctcaatta gagcaagaca
    22741 aaagccctga taatattaaa ttactcgcga tagctttatc tgacttaagc gataaaaatg
    22801 ggtgggcgaa cgaagagcta aataagctaa ccagaacgat aaacgataat tcagtatctg
    22861 ctttagatgc cgaaacatca gtaagactct tagagtctgc tataaaagac ttgcaaaatg
    22921 caatccaaaa ctcccaaggt gcattggatg gcaatgtagc aaaaatgaat caacttgcag
    22981 atgcggcaga aagaaaagct gcaacgatag gcaagactga gcgtgaaact gctaaatatg
    23041 cagctacgct attagctaca accgatgaag ctaaaaaaaa tcttgattcc acattaagta
    23101 ggattgacgc atcatacgat caaatcgaag cctatcaagc cgaacaaaaa gccttacaag
    23161 ataaaaagac cgcagatgca aaagctgcca gagaagctga agcggctgca aaaaaatccg
    23221 ctcaagccaa gaagcaagtt gtcgaacagt tgcgacaaat ggctacacag tacgagattg
    23281 ctgttttgag gcaaaaggga atgcatctcg aagccgtaaa attagaagct ggtatgcgtt
    23341 taggagctgc ggcaacaaaa gagcaacgag aagaagctga aaaactagca caaagtattt
    23401 atggagcaac cgcagcaagt cagaacttta acgctataca agcccaagca tctcctgtta
    23461 ctgcattaga ccaacgacat caacaacagc tagctcagat cgaagaatat aaaatcttgt
    23521 atccacaaaa aataatggaa gcagaagctg cgagagctgc aatcgaagaa caataccgcc
    23581 agcaacgaat ggaagctcaa tgggaggagt ggaagcaagc gagcgacggg gcgagaatgt
    23641 ttggtgatgc ggttgatgct gttggttcaa gtgcaacaag cacaattacg gggctactaa
    23701 atggcacaat gtccgtgcgt gatgctttcg catcaattgc aaatacgatc ttaaatagtg
    23761 tagtacaaag ccttgtcgaa atgggtatgg ctcaagttaa gcaaatgatt atggggcaaa
    23821 ctgctgccaa ggcttctatg gcggcgcaaa tggtgcaagc taaagcgtta gctgcttcat
    23881 ttgcacccgc ggcctctatg gtttctcttg ccacacaggg ggcgaatgct attcccgctc
    23941 aagctgcgat cacgtcaact atgagtatgg ctcaagtcgc cgcggtgaca ggtcgtaaac
    24001 ttggcggccc tgtatcagct agacagatgt atcgtgtcgg cgagaacaat cagcccgaaa
    24061 tcttcaaagc gagcaatggg atgcaatata tgatccccgg tcaaagcggt cgtgtattca
    24121 gcaacaagca gtcgcaaggt caaggtggag gcgaaagcaa aacagtagct gtcatcgtaa
    24181 atcaaaccaa tcactttagc agcgatgaag ccagtgcaaa tcaagcggct gttgcaaaag
    24241 cattgagcaa tcaaatcaag gcttccgtga gattggaatt gcagtcacaa atgcgagctg
    24301 gtggagttct agcgaggtaa tcaatgcaaa catttaattt caaggttgag caagactaca
    24361 ctgttcaaaa tgagcccagt gtcgtcatac taaaatttgc cgatggttac gagcaaaccg
    24421 ctcccaaagg gttaaaccac aatctgaaaa aataccaagg cattaccgta aaagcgaaca
    24481 aagcagaagc ggtgaagatt cagcaatttc tcaatgctca cggtgggtat aagaaattca
    24541 actggcgcga tagaacaagc gatgagacgg taacggttcg ttgcagaagc tggagctcca
    24601 ctaaattagg tgcagtcatt gagtttacac ttaatttcga tgaggtgatt taatgccaaa
    24661 agcccccccc aaaaaaatgg catcagagtt gataaaactc gaacaagatg ccctgattga
    24721 gctgtgggag atagatctca ctcacatcta ctctagctca aacccaaatc agcgcggaga
    24781 gatattccgc tttcacaatg gcgtgagcca aacacaacag aacatctggt ggcaaggcaa
    24841 tgaataccaa gcatacccga ttgccgccga tggttttgag atttcgggtc aaggaccgtc
    24901 aaatcgtcca acactcactg tctctaacct gtacggtgtt gtcacggtat tagtagaaga
    24961 tttcgggcaa cccgtagagg cgaaagtcag cagtgaagag actgtagatg gcaatatcca
    25021 aatgacggtg gaactgctga aaaaaatgga tcaaatcgcc gatcaacgct accgtagaaa
    25081 tcagttaaat gatttaagaa caggtggaac attatctaaa taggtgaagt atgccaatta
    25141 gtatttctaa ccaaatgaaa ctagatcttg ccaaacttga gcaaaatgca atgctggact
    25201 tgtacgaggt tgatttgcgt aaattgcaag acaaaaacgg caatgctggt ag
//
LOCUS       DANLZD010000019        25189 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.019, whole genome shotgun sequence.
ACCESSION   DANLZD010000019 DANLZD010000000
VERSION     DANLZD010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 25189)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25189)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25189
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.019"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            54..2353
                     /locus_tag="PXE26_000570"
                     /pseudo
     CDS             54..2353
                     /locus_tag="PXE26_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005759321.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(2431..3132)
                     /locus_tag="PXE26_000571"
     CDS             complement(2431..3132)
                     /locus_tag="PXE26_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HDL5593182.1"
                     /translation="MDLQNRENFLNKLAQRMGRPRQNVPEPIPVLENNHAITRLTDRP
                     QPQLCQEFIDFARVMMADVVEAKEADLPQAIIDICEKYGGASVIVNNDQRLKDLGITA
                     AIQAKYEDSYVWDFNQAETNFEKARTANIGVVYGEYGLAESGGIVLFSDKEFGRSVSL
                     LPEKSVVVLRKSTVLPRVAQLAQILHEKAQRGERMPSCVNIISGPSATADIELIKVVG
                     VHGPVNKIYLVIDDL"
     gene            complement(3137..4546)
                     /locus_tag="PXE26_000572"
     CDS             complement(3137..4546)
                     /locus_tag="PXE26_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HDL5593183.1"
                     /translation="MSYLQTNTLPFKQRVEQQVNNEIVRKALVKAQETIGANRQRMVD
                     ELGNWEEWRDDAKAIRNHVLANLDAYLYQLSEKVTQNGGHVFFAETAEEATDYIKNVA
                     KAKNAKKIVKSKSMVTEEIGMNHVLEAEGIKVVETDLGEYLLQIVGDKPSHIVVPAIH
                     KDRHRIRQEMHDVLGYQGSETPEEMTAFVRQKIREDFLEADIGISGCNFAVPETGSVC
                     LVTNEGNLRMATTVPKTHIAVMGMERIAPTFKEVDVLITMLARSAVGAKLTAYNTWLT
                     GPRLEGETDGPEEFHLVIVDNGRSKILESEFQEVLRCIRCGACLNTCPAYRQIGGHGY
                     GSIYPGPIGSVISPLLGGYEEFKELPYACSLCTACNSVCPVKIPLAQLILKHREKIAD
                     AGLTPMAERLSIFGFNFANSHPTLWKVGVKVGAKVASKLIKNGKAPVNFGALGEWTKA
                     RDLPTAEGESFREWFNNRG"
     gene            complement(4548..5279)
                     /locus_tag="PXE26_000573"
     CDS             complement(4548..5279)
                     /locus_tag="PXE26_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDL5593184.1"
                     /translation="MNVNFYVTCIADVMKAGVAKNTVLLLEKLGCKITFLEKQGCCGQ
                     PAINSGYTKQALAGMKNLVETFEANDYPIVAPAGSCVYAIKTYPDHFERFGEKEWAER
                     AKKVADRFYDLTDFIVNKLGVKDVGAYLPGKAVYHPSCSLFRKLGIKDEPIALLQHVK
                     GLELLPIKNQETCCGFGGTFSVKMAEISGEMVKEKVANVDTDEPDYLIGADVSCLMNI
                     GGRLSREGKPIKVMHIAEVLMQGGK"
     gene            complement(5423..7027)
                     /locus_tag="PXE26_000574"
     CDS             complement(5423..7027)
                     /locus_tag="PXE26_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDL5593185.1"
                     /translation="MALFLSVFPIVLLIYLMVKRNALPSYVALPLTALLIFVLQLTYF
                     GNDTTLIFANIIAGLGDVLTPITVIFGAILFNRFSEVSGATNTMRKWLGTINPNPVAQ
                     LMIIGWAFAFMIEGASGFGTPAAIAAPILVGLGFKPLQVAMLALVMNSVPVSFGAVGT
                     PTWFGMGPLLKDGLLTDAQVLEIGSITALIHSIAAFIIPVMALRLIVSWKEIRQNIVF
                     IYISIFACVIPYFIIAQFNYEFPSLVAGAIGLLVSVWVANMGIGLAKSENHLDGDKAT
                     FGEVAKALLPTGLLIFILVITRIQQLPLKAMLNDATAWIVSSLGFANFEISQGLIFAL
                     KNILGTNVATSYKLLYVPALIPFVVTVLICLPIFSVSGKNTQEIFGTSFKQVKKPFLA
                     LLGAIVMVKLMLIGGVDSMVQIIGKNFAEFTGQSWTLFASFLGAIGAFFSGSNTVSNL
                     TFGTVQYATAQQVGLSVTLILALQSVGGAMGNMVCINNIVAVCSVTGIEKQEGNIIKK
                     TAVPMFVYGVIAAISALFIVPMFYNL"
     gene            complement(7317..8408)
                     /gene="ychF"
                     /locus_tag="PXE26_000575"
     CDS             complement(7317..8408)
                     /gene="ychF"
                     /locus_tag="PXE26_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001538644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HDL5593186.1"
                     /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVV
                     PMPDPRLDALAEIVKPERVLPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGH
                     VVRCFENDDIVHVAGKIDPADDIEIINTELALADLDSCERAIQRLQKRAKGGDKDAKF
                     ELSIMEKILPVLENAGMIRSVDLDKDELHAIKGYNFLTLKPTMYIANVNEDGFENNPY
                     LDRVREIAEKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYRL
                     LNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYQDFIDNKGEA
                     GAKEAGKWRLEGKDYIVQDGDVMHFRFNV"
     gene            complement(8594..9181)
                     /gene="pth"
                     /locus_tag="PXE26_000576"
     CDS             complement(8594..9181)
                     /gene="pth"
                     /locus_tag="PXE26_000576"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HDL5593187.1"
                     /translation="MSEIKLIVGLANPGVKYEETRHNAGEWLINELARIYNVSLKEEP
                     KYFGKVAKINTAQGEVRLLVPTTFMNLSGKAVGALANFYRIKPEEILVAHDELDLPPG
                     SVKLKKGGGHGGHNGLKDIIAALGNNKEFYRVRIGIGHPGHKDLVANYVLGKPSPSDQ
                     TLLNSAVDEAARCVEVLFKDGMVKATNRLNSFKAN"
     gene            complement(9254..10129)
                     /locus_tag="PXE26_000577"
     CDS             complement(9254..10129)
                     /locus_tag="PXE26_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HDL5593188.1"
                     /translation="MMKKFIPVMIAALVLSACSSQPAKRKSTPRIKATAAYIPTENSA
                     YVVFDLNQKKFLEGKNFNLVRPIASVTKLMTAVVFLEENRYGASCQTQILPSDADFLK
                     GTTSPLPKNLNIACSELLKAMLVRSDNYAAHALAHATHLNKAQFLARMNSKAREIGMT
                     QTYFGDSSGLSSDNVSTVVDLAKLAGYAASKPEIQQLSNSPLVSVYAGGRYFSMKNTN
                     SMVRSQSYQALVSKTGYTREAGYNLAFIAKGDCRGKRIGVVSLNNDNAASRTDFTESM
                     LAKYQCVPNPYRQYD"
     gene            10351..11931
                     /gene="prfC"
                     /locus_tag="PXE26_000578"
     CDS             10351..11931
                     /gene="prfC"
                     /locus_tag="PXE26_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HDL5593189.1"
                     /translation="MSYPQEVNKRRTFAIISHPDAGKTTITEKVLLYGNAIQTAGSVK
                     GKGSAQHAKSDWMEMEKQRGISITTSVMQFPYNDCLVNLLDTPGHEDFSEDTYRTLTA
                     VDSCLMVIDSAKGVEERTIKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVESVLK
                     IKCAPITWPIGCGKLFKGVYHLYKDETYLYQTGQGHTIQEVRVVKGLNNPELDQAVGD
                     DLAQQLRDELELVQGASHEFDHTEFIKGELTPVFFGTALGNFGVNHFLDGLTEWAPAP
                     QARQSDEREVSPSEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRIG
                     KDVVISDALTFMAGDRSQAEEAYAGDIIGLHNHGTIQIGDTFTQGENFKFTGIPNFAP
                     ELFRRIRLRDPLKQKQLLKGLVQLSEEGAVQVFRPLINNDLIVGAVGVLQFDVVVSRL
                     KTEYGVEAIYETVNVATARWVEGKDAKKFEEFKRKNEANLALDGGDNLTYIAPTMVNL
                     NLAQERYPDVQFFKTREH"
     gene            12190..13764
                     /locus_tag="PXE26_000579"
     CDS             12190..13764
                     /locus_tag="PXE26_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5593190.1"
                     /translation="MKKWLIPLTVAAFCVSACDDKNSTQATAEKPQVENTQSQKNAEI
                     LPLATVVAPWEINSLDPNQSGVIFQRMNLAETLVEADLNGNLIPALATDWRSNEEGTI
                     WRFTLREGVKFHNDQVLTAQAVVNSLNIAKSKPGVLAKAFIKEIRAVDNKVEIELTKA
                     FVPFPPFLTHYTALILAPESYNEKGEVTQIIGTGAFKPTKIEAPQKLEAVQFEGYWGK
                     KPQVQQANYLASSRSETRMLMAQSEPSSLVFNLDTASVARLKADPNLQLVSGSIARTI
                     QLKMDVAKPFFNDLAIRQALSQAINRKAIAEQVLKIENGAADQILPKAFADWRVDTAE
                     QVVDIAKIKQNLTASGYTFDEQGRLTKDGKPFSFTMRTFSDRPELPVIATILQAQWKQ
                     IGVEVNVSVGNFSEIPAGHQDGSLEMALYALNYGKTLDPYGVIASDFANGGSDWGVMN
                     WQNTEVDNAVKSLETERDPQKAKALKQTVSKIIYNDLPIIPVVYYQQNVVAHKEVKNV
                     TLDPFERRFFLELLSK"
     gene            13984..14916
                     /locus_tag="PXE26_000580"
     CDS             13984..14916
                     /locus_tag="PXE26_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5593191.1"
                     /translation="MHKILFRRLIQILLVIWSVGTLTFILTRQLSGDMAYRIAASRYG
                     YDQADSAAAEAVRAELGLDQPWWQSYFSWLSDLAQFNLGKSLVTGDPVWSEIQHQFGH
                     TLSLAIVALILAILIGPPLGLLAARKPNGFFDRLTLVFSTLFRSVPAFIIAIGLITLF
                     SAQLKWLPAGGYGCWQHFILPALTLAIGLSTVSVRVTRSAMVQVKGSEFYQFSQLKGL
                     SRWHTFLRHGLPNIAVPVIAYHAVQLVYLIEGVVVVESLFAWPGSGHALVHAIIARDV
                     PMIQGTTLVMGGLFVVLNTIADLLSAWIDPRIKR"
     gene            14926..15708
                     /locus_tag="PXE26_000581"
     CDS             14926..15708
                     /locus_tag="PXE26_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5593192.1"
                     /translation="MKISISQYLGGTILLAMLGFAFLQPYFYPMDIGFQDLTNILSNP
                     NEIAWFGTDHLGRDMLARLASAIRLSFGLSLFSVICALIAGLITGIMAGFFGGWIDRI
                     FSFICDLVMALPGLLLVLLFAALSPGSFWTLYLGISLVMWVEFFRVIRSISSTMANSS
                     EIQASRLMGMGWFYSFKRHLLPRLLPMIATLSAFSLGNAILALATLGFVSVGLRPPTA
                     ELGLMMTELFPYYYEAPLIFLQPVVAVFLMVLSLQLLSRKIK"
     gene            15797..17209
                     /locus_tag="PXE26_000582"
     CDS             15797..17209
                     /locus_tag="PXE26_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5593193.1"
                     /translation="MKLLDIQNLSVETENRLQLVEPISLQLKAGKNITILGETGSGKS
                     LLIQAIMGALPDGLIASGEISVKNCKISTESDRLQTLWGKTLVMLPQEPRRSLNPIMA
                     IGKQLWESFHYVAGKPSSQAKTESKAYLAKLGLGESVENYPHQLSGGMAQRASFAIAT
                     AAGGKILLADEPTKGLDPISKGKVIELLKSAYQNGGGLLTITHDIEVAEQLGGTILVM
                     KKGELLEQGEAKALLNNPQHPYTKALISADPKHWQPLQDLQNLSQKQPLVSVKNLSIA
                     RGKKTLFSNLSFDLHKGEVLGIVGHSGIGKSSLADVLCGLLKPKSGEVVWHSHSHKKH
                     QVLKLYQDPPEAFAPNVSLKTLLDDVINKHQLDRLPIPSLLQQLSLNPEILQRNAENV
                     SGGELQRVAILRALLLEPVLLFADEVTSRLDPITQQETIELLINQCRARNCSLILVSH
                     DPYLIEKSCDKVINLEEYVG"
     gene            complement(17296..18039)
                     /gene="rlmB"
                     /locus_tag="PXE26_000583"
     CDS             complement(17296..18039)
                     /gene="rlmB"
                     /locus_tag="PXE26_000583"
                     /EC_number="2.1.1.185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HDL5593194.1"
                     /translation="MSEQIYGIHAVKAFLDNAPERLIEVLVLKGREDKRLMPLLNELQ
                     RLGVAIQQVNRQTLDNKSQGEVHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDG
                     VTDPHNLGACLRTADAAGVDAVIVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLART
                     MRDLQERHNVWIVGTAGEAESGIYEAKLTGSIALVMGAEGDGMRRLTREHCDQLISIP
                     MAGSVSSLNVSVATGVCLFEIVRQKLAGQ"
     gene            complement(18094..19461)
                     /gene="pssA"
                     /locus_tag="PXE26_000584"
     CDS             complement(18094..19461)
                     /gene="pssA"
                     /locus_tag="PXE26_000584"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HDL5593195.1"
                     /translation="MLILNKQRKAEYLLKSLPYLPQVAEQVQFLASSKAFKQQILQLI
                     QTAKKRIYITALYFEKDEAGQEVLAALYQAKRNNPELEINILVDWHRAQRGRIGEAEN
                     LSNADWYAKVKYEQGLPAGQEIAFYGVSINGREVFGVLHLKGFVFDDTILYSGASINN
                     VYLHQFERYRYDRYHVIENKVLADSWVTFIQQHLLTNEAVKRLDTENRPKTAEIRAQI
                     KHFRKQLSREAYLFNGVAENGRLAVSPLVGLGRRKNQLNKVIEALFYQTEQKLTICTP
                     YFNFPHSLRTRIEWLLANGKSVEIIVGDKTANDFYTKPDEKFTMASALPYLYEKNLRA
                     FAKRLDGYVQNKQLTIRLWKDGENSYHLKGVWVDNRYILLTGNNLNPRAWRLDAENAI
                     LISDPQHQLSEKAETELNQICQHTQILTHYSDLEVLTDYPENVRKLLKKFGRVKLDKI
                     VKMLL"
     gene            complement(19531..21078)
                     /locus_tag="PXE26_000585"
     CDS             complement(19531..21078)
                     /locus_tag="PXE26_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tannase/feruloyl esterase family alpha/beta
                     hydrolase"
                     /protein_id="HDL5593196.1"
                     /translation="MMKIIAFLFIFLSVFSHTALANSMAEQCVALKSNSPEKTAIYKA
                     EWVEKSAELPAYCLVQGEIGKRVEVDNVPYGIQFELRLPEQWNEKFLFQGAGGVGGVI
                     FPAIGKLYPHGASGANGLNRGYAVVSNDSGHATRDLVFTADPEARSNYAYASIGKVTT
                     VAKQLIAEFYRKPSKHNYIMGCSNGGREAMMAAMRYPQEFDGVIAGSPGFRVSRSVLA
                     EVWDNRALLAVAPKNGDGDKILSQALTQQDLDVIANGVLTRCDKLDGLADGLINAWEQ
                     CDFQPEMVAKQLGQKKVALIKTIFEGAKNSRGELIYSPWAYDSGINAKGWRDWKLGDS
                     QTAQPNSISFKMGLKSLTHYYLAPRVPSRDPLSVDLDQASEQVKAVGSIHDTDQVDLS
                     AFKQNGGKMLIYQGVSDPIFSAVDLKNWYQSLQQAVENPQHFAKLFFVSAMNHCGRGA
                     TVNDFDMLTALENWVEKGLEPESIAAKAGELYPNKAKQIPLCAYPKVAIYQTGEDPNR
                     LTSYQCR"
     gene            complement(21203..24019)
                     /gene="ileS"
                     /locus_tag="PXE26_000586"
     CDS             complement(21203..24019)
                     /gene="ileS"
                     /locus_tag="PXE26_000586"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HDL5593197.1"
                     /translation="MTIDYKNTLNLPETGFPMRGDLAKREPDMLKNWYDKNLYQKIRT
                     ASKGKKTFILHDGPPYANGNIHLGHAVNKILKDMILKSKTALGFDTPYVPGWDCHGLP
                     IELKVEGIVGKPNEKISAAEFRQACRDYAKEQVEGQKADFIRMGILGDWDNPYLTMNF
                     NTEANIIRTLGKVIANGHLYKGSKPVHWCLDCGSSLAEAEVEYEDKVSPSIYVRFNAV
                     DVNAVEEKFNAQGKGRGALSAVIWTTTPWTIPSNRAIAINPELDYALVQLGDERVLLA
                     VDLVEDVAKAAGVESAEILATTKGENLELLRFNHPFYDYSVPFIFGDHVTTDGGTGLV
                     HTAPDHGADDFVVARKYNIEMAGLISNDGKFKADTPFFAGLGVFESNDKVVEKLQEVG
                     ALLKLSRIKHSYPHCWRHKTPIIFRATPQWFIGMETQGLRQQALGEIKSVRWIPSWGE
                     ARIDTMVANRPDWCISRQRTWGVPMAMFVHNETEELHPRTLELIEEVAKRVEEKGIQA
                     WWDLDPAELLGEEAKDYRKVPDTLDVWFDSGSTYASVVEQRPEFNGNSADMYLEGSDQ
                     HRGWFMSSLMLSTATNGKAPYKQVLTHGFTVDEKGRKMSKSLGNVIVPSEVWNKNGAD
                     ILRLWVASTDYTGEITVSHNILNSAGESYRRIRNTARFLLANLNGFDPKSDLVQPQEM
                     IALDRWAVACALEAQNDIKEAYDNYQFHTVVQRLMRFCSIEMGSFYLDIIKDRQYTTK
                     ADSLARRSCQTALWHIAEALVRWIAPILSFTADEIWGYLPQVEGRSEFVFTEEFYTGL
                     FGLTEQDKLDDAYWQQILKVRAEVNRVLEQARKDKVIGAGLEAKVTVFANDEIRPLLE
                     QLGNELRFVLITSQAIVKPLAEADIAEGELAGLAVKVENADGEKCPRCWHYATDIGSH
                     SGHEEVCGRCVENVAGEGEKRLFA"
     gene            complement(24122..25084)
                     /gene="ribF"
                     /locus_tag="PXE26_000587"
     CDS             complement(24122..25084)
                     /gene="ribF"
                     /locus_tag="PXE26_000587"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HDL5593198.1"
                     /translation="MQLIRGFHNLDKHIALNQGCVLSIGNFDGVHLGHQNILARLCDR
                     ALDLGLPSVVMLFEPQPREFFAKKSGNSTACNPPARLMRLRDKLKYLEEAGVDFVLCV
                     RFSEKFAQISADDFISDLLAKRLKVRYLSVGDDFRFGAKRAGSFETLRNAGLKYRFAV
                     EESHTHSLNEERISSSLVREALQNNELDLAEKLLGKPYSILGRVAHGNKLGRTIGFPT
                     ANIMLNRLVTPIQGVFAVKVKTKQGSFNGIANVGNRPTINGTKPLLEVHIFDFNASIY
                     GEAIEVIFLKKLRNEIKFPDFEALKAQIEKDRLQAVEFFKEFAR"
BASE COUNT         7179 a         5760 c         5029 g         7221 t
ORIGIN      
        1 aatttcattg ccattatttt tttatggcta tttattctag aaggactcta aacgtgttaa
       61 agaaaaatta tctcactgta tcaattctcc ttgccattag tggagtaggc tacgctaatg
      121 aaatctcttt agagactatt actgttgatg gaaatacgcc ttcaaccaaa gggaaattac
      181 taggtggtga actaaatagc aatgaatctg ttgttgatga aaaaaattaa aacaaggtag
      241 tattacatta ggtaacgctt tatctggtga attaggcatt cattcaagcc agttcggagg
      301 cggtgcaagt accccaatta ttcgtgggca agagagtaaa cgtgcaaaaa tcttacaaaa
      361 taatggcgaa aacttagata tgtcgggaat gtctcctgat catgcagtaa ccgtagatgc
      421 gctacttgct aaacgtattg aaattttacg tggtccaact actttacttt acagtgcagg
      481 taatacggca ggtgtaatta atgtggtaga caataaaatt ccaaccgcta ttcccgaaaa
      541 aggctatgag gggcaatttg gtgtgcgttt tggctcagcc agtaaagagc gtttaaccta
      601 tgcaggctca acctttgccc ttggaaatca tttagccttg cgggtacagg gaatgtataa
      661 caaagcttcc gaatactatg ctccacactt tacgattgaa ggcaaacctt accaccgcgt
      721 accagatagc gatgtacaat cacaaaccgg cacagtaagc ctttcttgga ttggagagcg
      781 aggacatctt ggtattgctt acactgatcg ccgtgataaa tatggattaa ttggtcacac
      841 acacaaatac gatcactata ctattagtat tattcgccaa gccgttatgt ttgcaaaagg
      901 ttatttacgt ttttatccgc accttgcaga agaaggagat attgactata acaaccctgg
      961 tatccgttta ctgcatactc atattccggg aggctcacat tatggacaag atactcacga
     1021 gcacggcaaa ccttggattg atatgcactc caagcggtat gatattgatg gaagtttgca
     1081 aaatccactt cctggttttg aagaagccaa aatatcagct aactatgtag attactatca
     1141 tgatgaaaaa gatggaaaaa gagttgaaaa ttacttcaag aacaaaggaa aaaatctacg
     1201 tttcgaattg gttcacaaag agtggaaagg gctaaaagga gctattggtg tgcaatatac
     1261 caaccaatct acctcagcac ttgcacttga agcttcacga gctgcaaaag tatttaataa
     1321 acagccttta ctcaataatc caaaaacaaa attatggagt ctctttgcga ttgaacgcct
     1381 taatttaggt gactttacct ttgagttaag tgggcgggca gaacgtcaaa aaatagcaat
     1441 ggattatgat gtgaaattaa ttgatcgctg gctaggcttt aatacaccta tgccaaactt
     1501 ggacccacat aaagacaaag gttattctta tagctttgca actcattggt atttcgcacc
     1561 aaaccataag ttaacattaa atgctgcaca tcaagaacgt ttacctaatg ctcaggaact
     1621 ctatgctcat ggtaaacaca ttgctttaaa tgcatttgag gctggcaata aaaatctaaa
     1681 aaaagagcgt tctaaccaaa ttgagctatc attagcttat gttggcgaca aatgggatta
     1741 taaattaaat ctctaccaca cccgctatgg caactatatt tacccattaa ctcttaatga
     1801 taatcgtgga cctaaatctt ttaccgatga atataacttg aaagtgaata gatattatca
     1861 aggcgaagct cgttttagtg gggcagaagg cgaaattggt tatctattta caccaaatta
     1921 tcgcttagcc gtattcggag actatgtccg tggaaagtta gtcaacttac ctaatattgc
     1981 aatgagttac aacatttgga caggtgaagt tgacaaatgg gcttctcagc cagacatttc
     2041 tgcacctcgt ataccaccac tacgtttagg agcaagattt aatgctgact tcaacctaaa
     2101 ctggtctgga atgttagaat attaccgagt atttgctcag aaaaaagtct cgaaatacga
     2161 acaagttacc cctggccatc atcaagtaaa ccttggcgta acctatagta atcattttaa
     2221 tcaaacagaa taccaagtat tccttaaagt ggataacttg cttaatcaga aaatgtacca
     2281 acatgcctca tatctaccac atattccaca aatgggtaga aatgcaatgc ttggaatgaa
     2341 tatcagtttt taatttgtaa atctctacaa aaatataacc gcttgtaaat ttctatctac
     2401 aagcggttac tttcagtgga ttttttgcaa ttagagatcg tcaattacca agtaaatttt
     2461 atttaccggg ccgtgaacgc caactacttt aatcaactca atatccgcag tcgccgatgg
     2521 gcctgagatg atattcacac aagatggcat tctttcacct cgttgggctt tttcgtgcag
     2581 aatttgtgca agctgtgcca cacgaggtaa cactgtactt ttgcgtaaca caaccaccga
     2641 tttttcgggc aataagctca ctgaacgccc aaattcttta tcggaaaaca gtacaatacc
     2701 gccagactct gccaagccat attcaccgta aaccacaccg atattagcag ttctggcttt
     2761 ttcaaagttg gtttcagctt ggttgaaatc ccacacatag ctgtcttcgt attttgcttg
     2821 aatggctgcg gtaatcccaa gatcctttaa acgttgatcg ttattcacga tcacactcgc
     2881 cccgccatat ttttcacaaa tatcaataat ggcttgtggt aaatccgcct cttttgcctc
     2941 tactacatct gccatcatca ctcgggcaaa atcgataaac tcttggcaaa gttgtggttg
     3001 agggcgatcg gttaaacggg taatcgcgtg gttgttttcc aacacaggaa ttggctcagg
     3061 cacattttgg cgtggtctgc ccatacgctg tgccaattta tttaagaaat tttcacgatt
     3121 ttgtaaatcc attttcttat cctctgttat taaaccattc acggaaactt tcgccttcgg
     3181 cagtcggtaa atcacgggct ttcgtccatt cacctaacgc cccaaaattc accggtgctt
     3241 tgccgttttt aatcaatttg cttgccactt tcgcccccac ttttacgccg actttccaaa
     3301 gggttgggtg tgagttagcg aagttaaagc caaaaataga caagcgttct gccattggcg
     3361 ttaagccggc atccgcaatt ttctcacggt gttttaagat aagctgtgcc agtggaattt
     3421 tcactggaca aacactgtta caagcggtac aaagtgagca agcatacggc aattctttaa
     3481 actcttcgta gccaccgagc aatggcgaaa taactgaacc aatcgggccc ggatagattg
     3541 aaccatagcc gtgaccgcca atttggcgat acgccgggca agtgttcaaa catgcaccac
     3601 agcggataca acgcaacact tcttggaatt cgctttctaa gattttagaa cgaccgttat
     3661 cgacaatgac caagtggaac tcttccggac catcggtttc gccttcaagt ctaggacctg
     3721 tcagccaagt gttgtaagcg gtgagttttg cccctaccgc actgcgagcc agcatggtaa
     3781 ttaatacatc aacctcttta aaggttgggg cgatacgttc catacccatt actgcaatat
     3841 gcgttttcgg cacagttgtt gccatacgca gattaccttc gttggtcact aaacaaaccg
     3901 agccggtttc cggcaccgca aagttacagc ctgaaatacc gatgtctgcc tctaagaaat
     3961 cttcacggat tttttggcgg acgaatgcag tcatctcttc aggtgtttcc gaaccttgat
     4021 aacctagcac atcgtgcatt tcttggcgga ttctgtggcg atctttgtgg attgcaggta
     4081 caacaatatg agaaggttta tcgcccacaa tttgcaataa atattcgccc aaatcggttt
     4141 caaccacttt aatgccttct gcttctaaaa cgtggttcat cccaatctct tcggttacca
     4201 tcgacttcga ttttacgatt ttcttcgcat ttttagcttt cgccacgttt ttgatgtaat
     4261 cagtggcttc ttcggcggtt tcggcaaaga aaacgtgtcc gccgttttgg gtgacttttt
     4321 cgcttaattg gtagagataa gcgtctaaat tggctaaaac gtggttacga attgctttcg
     4381 catcatcacg ccactcttcc cagttgccca gctcatccac catacgctga cggtttgcac
     4441 cgattgtttc ctgagcctta actaaggctt tacgcacaat ctcgttatta acttgctgct
     4501 caacacgttg tttaaacggc agggtgttag tttgtaaata agacatctta ttttcctccc
     4561 tgcattaaca cttcggcaat gtgcatcact ttgattggct taccttcacg gcttaaacga
     4621 ccgccaatgt tcatcaagca gcttacatct gccccgatta aataatccgg ctcatcggta
     4681 tctacatttg cgactttctc ttttaccatc tcgccggaaa tttctgccat tttgaccgag
     4741 aatgtgccac caaaaccaca gcaagtttct tggtttttga ttggtaataa ctctaaccct
     4801 ttaacgtgct gtaataaagc aataggctca tctttaatcc ccagcttacg gaataagctg
     4861 caagacgggt gataaactgc tttgcccggt aaataagccc caacatcttt cacgcccagt
     4921 ttgttcacaa taaaatcggt taaatcatag aaacgatcag ccactttctt cgcacgttct
     4981 gcccattctt tttcgccaaa gcgttcaaaa tgatccggat aggttttgat cgcatataca
     5041 caagaacctg ccggggcgac aatcgggtaa tcattagctt caaaggtttc aaccaagttt
     5101 ttcatacctg ctaaagcttg cttagtgtaa ccgctgttga tcgcaggttg tccacagcaa
     5161 ccttgttttt ctaagaaagt gattttacaa cctaattttt ccaataaaag cacagtattt
     5221 tttgcaaccc ctgctttcat tacatctgca atgcaggtta cgtaaaaatt aacgttcata
     5281 aagaactccc acagtaaata taaataagaa ttaaactcaa aaaatgccgt tctaagacgg
     5341 cgaaaggaag aggtggattt gcaaaaaatt tgctaaatct caccgcttcc tttctaaatc
     5401 aagtaagctg attattaact cattataggt tatagaacat aggtactata aacaatgccg
     5461 aaatcgcagc aataacgcca tacacgaaca ttggcacggc tgttttctta ataatattgc
     5521 cttcttgttt ctcaatgccg gtaacagaac acacagccac gatgttgtta atacacacca
     5581 tattccccat tgcaccacca actgattgca atgcaagaat taaggtaaca gataacccga
     5641 cttgctgtgc cgttgcatat tgtactgttc cgaaggttaa gttagatacc gtatttgacc
     5701 ctgagaagaa cgcaccaatt gcacctaaga acgaggcaaa taatgtccaa gattgaccgg
     5761 taaattctgc gaagttttta ccaatgatct gaaccattga gtctacacca ccaattaaca
     5821 ttaattttac catcacaatg gcacctaaaa gtgctaagaa tggttttttc acttgtttaa
     5881 atgaagtgcc aaaaatctct tgagtatttt tacctgatac cgagaaaatc ggtaagcaaa
     5941 ttaatacggt cacaacaaat ggaatcaacg caggaacata cagtaattta tagctagttg
     6001 ctacattcgt acctaaaata tttttcagtg caaaaattaa gccttggcta atttcaaagt
     6061 tagcgaaacc aagcgaactg acaatccaag ctgttgcatc atttagcatt gcttttaatg
     6121 gaagttgctg aatacgggtg attaccaaaa tgaagatcag taaccctgtt ggtaataatg
     6181 cttttgccac ttcaccaaag gtcgctttat cgccgtcaag gtggttctcg cttttcgcta
     6241 aaccaatacc catatttgct acccagactg acaccaataa accaatcgcc ccggcaacta
     6301 atgatgggaa ttcgtagtta aattgagcaa taatgaagta aggaatgaca caggcaaaaa
     6361 tgctgatata aataaacacg atattttgac gaatttcttt ccagctcaca attaaacgca
     6421 atgccataac tggaataata aacgcagcaa tagagtggat cagtgcagta atagaaccaa
     6481 tttcaagcac ttgtgcatcg gttagtaaac catcttttaa taatggtccc ataccaaacc
     6541 aagttggtgt gccaaccgca ccaaatgaca ccggcacaga gttcattact aaggctaaca
     6601 ttgccacttg taacggttta aagcctaaac caaccagaat tggagctgca attgccgccg
     6661 gcgtaccgaa acctgatgcg ccttcaatca taaatgcaaa tgcccaaccg ataatcatca
     6721 actgtgccac cggattcggg ttaattgtcc ctaaccattt acgcatagtg ttggttgcac
     6781 ctgaaacttc agagaaacgg ttaaataaaa tcgccccgaa aataacggta attggggtta
     6841 atacatcacc taaaccggca ataatattgg caaagattaa cgtggtatca ttaccaaaat
     6901 aggtaagctg aagcacaaaa attaataacg ccgtaagtgg taaagccaca taagacggta
     6961 acgcgttacg ttttaccatt aaataaatga gcaaaacaat tggaaatacg ctcaggaata
     7021 gagccatact gcacctcttt atatgattat aaaatgacct aactggtcgg ataggtgcga
     7081 attgtactct taaaaaaaac taatgtaact aggttgttac aattttgtga tctagctcgc
     7141 atttttaatg attgtatggt taaaaaagag ccatatttat tttcatttaa tacttaatag
     7201 ttagccctat ttaagacatt tttaccgaat cgagcaatat gcaattaatt aacaaaaaaa
     7261 ggccgcttgt agatcacaga tcaacaagcg gtctttttta ggcaaaaatt tgcaaattaa
     7321 acattgaaac ggaagtgcat tacatcgccg tcttgaacaa tataatcttt accttccaaa
     7381 cgccatttac ccgcttcttt tgcaccggct tcacctttat tgtctatgaa gtcttggtaa
     7441 gcaattactt ccgcacgaat aaagcctttc tcaaagtcag tgtgaatcac ggctgctgct
     7501 tttggagcgg ttgcacctac cgaaaccgtc cacgcacgca cttcttttac ccctgcggta
     7561 aagtaggttt gtaagttaag taaacggtag cctgcacgaa taacacggtt taagcccggc
     7621 tcttcaatgc ctaaatcttg tagaaattcc actttttctt cgtcatcaag ctcggcaatt
     7681 tccgattcaa tcgctgcaca caccggtaca accaccgccc cttctttttc ggcaatttca
     7741 cgcacacggt caagataagg gttattttca aaaccgtctt cgttcacgtt ggcaatatac
     7801 attgtcggtt ttaaagttaa gaagttgtag cccttaatag cgtgcagttc atccttatct
     7861 aaatctaccg aacgaatcat accggcattt tcaagcacag gtaggatttt ttccataatc
     7921 gataattcaa attttgcgtc tttatcgcca cctttcgcac gtttttgtaa acgctgaatg
     7981 gcacgctcgc aactgtctaa atcggcaagt gccaattcgg tattgatgat ttcaatatca
     8041 tcagctgggt caattttccc cgcaacgtga acgatgtcat cattttcaaa acaacgcaca
     8101 acgtggccaa tcgcatcagt ttcacgaata ttggctaaga atttattacc taaaccttcg
     8161 cctttgcttg cacctgccac taagccggca atatccacaa attccattgt agttggtaac
     8221 actcgctcag gtttcacaat ttccgccaac gcatctaagc gagggtcagg cattggtacc
     8281 acaccggtat ttggctcaat cgtacagaac ggatagtttg ctgcctcaat acctgcttta
     8341 gttaatgcat tgaaaagggt cgatttaccg acatttggta aacccacaat accacattta
     8401 aatcccattt tttgttcctt agaattcccc tctccccttg cgggagaggg ataaatttga
     8461 gcttcgttca gaagcgaaaa tgagggagag ggcgaaattg caataatttc ctcaaatatg
     8521 accgctcccc tctctctgaa aaatacttct gaacgaagta tttttcggtc tctctcccac
     8581 aagggagaga gttttaattt gctttaaaac tatttaaacg gttagttgcc ttaaccattc
     8641 cgtctttaaa taaaacttct acgcaacgtg cggcttcatc aaccgcacta ttcagtaatg
     8701 tctgatcgct tggtgaaggc ttgcccagca cataattcgc cactaagtct ttatgccccg
     8761 ggtgtccaat accaattcgc acacggtaaa actctttatt attgccaagg gcggcaataa
     8821 tatctttcaa gccgttatga ccaccgtgtc cgccgccttt tttcaatttc accgaaccgg
     8881 gtggtaaatc caattcatcg tgagcgacca aaatttcttc cggtttaatc cgataaaaat
     8941 tggctaacgc tcccactgct ttaccactta aattcataaa agtagtcggc actaataaac
     9001 ggacttcgcc ttgagcggta ttaatttttg ctactttgcc aaaatatttc ggctcttctt
     9061 ttaggctaac gttatatatt cgggcaagtt cgttaatcag ccactcgcct gcattatggc
     9121 gggtttcttc atattttacc cccgggttcg ccagcccgac aattaattta atttctgaca
     9181 caatcttgtc tcaattcatt taatttaaaa ggcagtattt tagagaaaaa ccgctatttt
     9241 ctcaaggcaa ccattaatca tattgtctat acggatttgg tacgcattga tacttcgcta
     9301 acatcgattc agtgaaatcg gtgcgtgaag cagcgttatc attgtttaaa ctaaccacac
     9361 caattcgctt gcctctgcaa tcccctttag caataaaggc aagattataa cccgcctcac
     9421 gggtataacc tgtcttactc actaatgcct gataggattg ggaacgaacc atactgttgg
     9481 tgtttttcat agagaaataa cgaccacctg cataaacact cactaatggc gaattagaca
     9541 attgctgaat ttcaggctta cttgccgcat agcctgccaa tttagcaaga tcaaccaccg
     9601 ttgaaacatt atccgaagat aagcctgagc tatcaccaaa gtaggtttga gtcataccga
     9661 tttcacgggc tttgctgttc attcgagcca aaaattgggc tttattcaaa tgtgttgcgt
     9721 gggcaagggc gtgagcggca tagttatcgg agcgaactag catcgctttt aacaattcac
     9781 tacaggcaat gttaagattt ttcggcaatg ggctggtcgt gccttttaag aaatcagcat
     9841 ctgacggcaa aatttgggtt tggcaactcg ccccatagcg gttttcttct aagaaaacga
     9901 ctgctgtcat taattttgtg accgaagcaa tcgggcgaac taaattgaaa ttcttacctt
     9961 ccaaaaattt cttttggttt aagtcaaaca ccacataagc ggaattttcg gttggaatat
    10021 aagcagcggt tgctttaatc cgtggtgtgc ttttcctttt tgccggctgg gaggaacagg
    10081 cgcttaacac cagagccgca atcataacag gaataaattt tttcatcata atagattcat
    10141 cgataataaa gtcaaagctg gttattctac cctgtttcca aaattgtgcc aaagcaagcg
    10201 gtcgattttt acaaaatttt tgcaaatcta gccgattttg caaaatttcc gccaaattta
    10261 accgcttgcc ctctcgcctc aaatcagcga aaataacgct taattttttg gcggactttc
    10321 cgcccttttt attttaattg gttgagaaaa atgtcatacc cacaagaagt taataaacgt
    10381 cgcacctttg cgattatttc ccaccccgat gcgggtaaaa ccaccattac cgaaaaagta
    10441 ttgctctacg gaaatgcaat ccaaactgcc ggctcggtaa aaggcaaagg ctcggcacaa
    10501 cacgctaaat ccgactggat ggagatggaa aaacaacgtg gaatttcgat taccacctcc
    10561 gtgatgcagt tcccgtacaa tgattgcttg gtaaacttac tcgatacacc ggggcacgaa
    10621 gacttctcgg aagatactta tcgtactttg actgcggtag atagctgctt aatggttatc
    10681 gactcggcaa aaggggttga ggaacgcacc attaaattaa tggaagtgac ccgcttgcgt
    10741 gatacgccaa tcctaacctt tatgaacaag ctagaccgtg atattcgtga cccgatggag
    10801 ctgttagatg aagtggaaag cgtgctgaaa atcaaatgtg cgccgatcac ttggccgatt
    10861 ggttgcggaa aattgtttaa aggggtatat cacctttaca aggacgaaac ctacttatac
    10921 caaaccggac aaggtcatac cattcaagaa gtacgagtgg ttaaaggctt aaataatccg
    10981 gaactggatc aagccgttgg cgatgattta gcccagcagt tgcgtgatga attagagctg
    11041 gtacaaggcg cttcgcacga attcgatcac accgaattta tcaaaggcga gctgacaccg
    11101 gttttctttg gcactgcact gggtaacttc ggggtcaatc atttccttga cggtttaacc
    11161 gaatgggcac cggcaccaca agcccgtcaa tcggacgaac gtgaagtttc accaagcgag
    11221 gaaaaattca gcggtttcgt atttaaaatt caagcgaata tggatccgaa acaccgagat
    11281 cgagttgctt ttatgcgtgt cgtttcaggt aaatatgaaa aaggaatgaa gcttaaacac
    11341 gtccgtatcg gcaaagatgt ggtgatctcc gatgccttaa cctttatggc gggcgaccgt
    11401 tcacaagccg aagaagccta cgccggcgat attatcggct tgcacaatca cggcacgatc
    11461 caaattggtg atactttcac ccaaggcgaa aatttcaaat tcaccggtat tccgaacttc
    11521 gcccctgagc tgttccgccg aatccgcctg cgtgatccgc tcaaacagaa acaactgctc
    11581 aaaggcttgg tacaactttc cgaagagggt gcggtgcaag tattccgtcc gttaatcaac
    11641 aacgatttga tcgtgggagc ggttggggtg ctacagtttg atgtggtggt ttcacggctg
    11701 aaaaccgaat acggtgtaga ggcaatttat gaaaccgtaa acgttgccac agcccgttgg
    11761 gtcgaaggca aagatgccaa aaaatttgaa gagttcaaac gcaaaaacga ggcaaacctt
    11821 gccctagacg gcggagacaa cctcacctac attgctccga caatggtgaa cttaaacctc
    11881 gcccaagaac gttaccctga cgtacagttc tttaaaacga gagagcacta aaaccaatag
    11941 gggcgaaaaa tctttcgccc ctacaaataa agcacaagcg gtcaattttt tttccgaatt
    12001 ttacaatact aggcattctg ttcctcaaat agcctaaata ttcccctatc aacaatcctt
    12061 atcttgagat tattctgcct attaattaac cactcaaaaa taccctcgca gaaaactcta
    12121 ctttttttat ggaaatatgc taaagttcgc caatattcat agccctgatt tttttatgga
    12181 gaaaataaaa tgaaaaaatg gttgattcca ttaactgtcg cagcgttctg tgtttctgct
    12241 tgcgatgata agaacagcac tcaagcaacc gcagaaaaac cgcaagtaga gaatactcaa
    12301 tcgcaaaaaa atgcggaaat attaccgctt gcaaccgtgg ttgccccatg ggaaatcaat
    12361 agccttgacc cgaatcaatc aggcgtaatt ttccagcgta tgaacttagc ggaaacattg
    12421 gtcgaagccg atcttaacgg gaatttaatt ccggcattgg ccactgactg gcgcagtaac
    12481 gaagagggaa caatctggcg ttttaccttg cgtgaagggg taaaattcca taacgatcaa
    12541 gtacttaccg cacaagcagt ggtaaatagt ttgaatatcg caaaaagcaa accgggtgtg
    12601 ttagcaaaag cctttatcaa ggaaattcga gcggtagata acaaagtgga aattgagcta
    12661 actaaagctt ttgtgccgtt tcctcccttt ttaacacact acaccgcctt aattttggca
    12721 cctgaaagct ataatgaaaa aggcgaagtg acccaaatta tcggtacagg tgcgtttaaa
    12781 cccacaaaaa ttgaagctcc gcagaaattg gaagcggtgc aatttgaggg ctattggggc
    12841 aaaaaaccgc aagttcagca agccaattat ttagccagca gccgtagcga aacccgtatg
    12901 ttaatggcac aaagcgagcc gtcatcactg gtatttaatt tagataccgc cagtgtagca
    12961 aggctgaaag ccgatcctaa cctgcaatta gtcagcggat ctattgcccg tactattcag
    13021 ttgaaaatgg acgtggcaaa gccgtttttt aacgacttag cgattcgcca agccttatcg
    13081 caagcgatta atcgcaaggc gattgctgag caggtcttaa aaattgagaa cggagctgcc
    13141 gatcaaattt taccgaaagc ctttgccgac tggcgtgttg ataccgcaga acaagtggtc
    13201 gatattgcaa aaattaaaca aaatctgacc gcttccggct atacctttga tgaacaaggt
    13261 cgcttaacca aagacggcaa accgtttagc tttaccatgc gcaccttctc agatcgtcct
    13321 gaattaccgg tgattgctac tatcttacaa gctcaatgga aacaaattgg cgtggaagtg
    13381 aatgtttcgg tgggtaattt cagcgaaatt ccggcggggc atcaagacgg cagtttagaa
    13441 atggctcttt atgccttaaa ttatggcaaa accttagatc catatggcgt aattgcctcc
    13501 gacttcgcca atggtggcag tgattggggg gtaatgaatt ggcaaaatac tgaggtagac
    13561 aatgcagtca aatcgctcga aaccgagcgt gacccgcaaa aagcgaaagc attaaagcaa
    13621 acggttagca aaattattta caatgatttg ccaatcattc cggtggttta ttaccaacaa
    13681 aatgtggtgg cacataaaga agtaaaaaat gtgacgctag atccatttga aagacgcttc
    13741 tttttggagt tattaagtaa gtagtttaat tcaaaatact cctcgcttta gaaaagggaa
    13801 ggtaggattt ttcagtagta atttgcgctc ttaggtgaat aaatagtgac agaattatcg
    13861 ttttttctca tttttcacct attttctccg cttatttctt ctgccaaatc ttcccttccc
    13921 ctctttgcta aagaggggga tcagaacgca taaaatcatc tttttaataa atgaaataat
    13981 acaatgcaca aaattctctt ccgccgtctt atccaaattc tactggtgat ttggtcggtt
    14041 ggcacactca catttatcct cacccgccaa ctttcgggtg atatggcata ccgcattgct
    14101 gccagccgct atggttatga tcaagcagat agtgctgctg ctgaggctgt gcgtgccgag
    14161 ctgggattag accaaccttg gtggcaaagc tacttcagct ggctaagtga cttggctcaa
    14221 tttaatttag gcaaatcatt ggtgaccggt gatccggtct ggtctgaaat tcagcaccaa
    14281 ttcgggcata ccttaagcct tgcgattgtg gcacttatct tagcaatcct tatcgggcct
    14341 ccgctcggtt tgttagccgc ccgtaagcca aacggctttt ttgaccgctt gacactggta
    14401 ttcagtaccc tgtttcgctc cgtgccggca tttattattg cgattggctt gattacgctg
    14461 ttttccgctc aactaaaatg gctacctgcc ggcggatacg gctgttggca acattttatc
    14521 ttgcctgcct taacgcttgc gattggcttg agtacggttt cggtacgagt cacccgttct
    14581 gcaatggttc aggtaaaagg ctcagaattt taccaatttt cacaattaaa aggcttaagc
    14641 cgttggcata cctttttacg tcacggtttg ccgaatattg ccgtgccggt cattgcctac
    14701 cacgcagtac aattagttta tttaattgaa ggcgttgtgg tggtcgaaag cctatttgct
    14761 tggcccggca gcggacacgc actggttcac gccatcattg cccgtgatgt gccgatgatt
    14821 caaggtacaa cgctcgtgat gggcggattg tttgttgtat taaacaccat tgccgatcta
    14881 ttaagtgctt ggattgaccc acgaattaag cgataggaca tcaagatgaa aatttcaatt
    14941 tcacaatatt taggcggcac tattctcctt gcaatgttgg gatttgcctt tttacagcct
    15001 tatttttacc cgatggatat tggctttcaa gatttaacca atatcctttc caatccaaat
    15061 gaaatcgctt ggttcggcac cgatcatctc gggcgggata tgcttgcccg tcttgcctct
    15121 gctattcgtc tttcgtttgg cttatcactg tttagcgtga tttgtgcctt aattgcaggc
    15181 ttaattaccg gcattatggc aggctttttc ggtggctgga ttgaccgcat tttcagcttt
    15241 atttgtgatc tagtgatggc actccccggc ttacttttag tattgctctt tgccgccctt
    15301 tctcccggct cattttggac gctctattta gggatttcat tggtaatgtg ggtggaattt
    15361 ttccgtgtga tccgctctat cagttcaaca atggcaaaca gctcggaaat tcaagcctca
    15421 cgcctaatgg gaatgggctg gttttatagc ttcaaacgcc acttattgcc ccgtttatta
    15481 ccgatgattg ccactttatc ggcattctcg ctcggcaatg cgattttagc tctcgccaca
    15541 cttggctttg tcagcgtagg gcttcgcccg cctacagcag aattaggctt gatgatgacc
    15601 gaactattcc cttactacta cgaagcaccg ctgatatttt tgcaaccagt ggttgccgtt
    15661 ttcttaatgg tactcagctt acaattattg tctagaaaaa ttaaataatg cgtaggggca
    15721 ggtcctgtgc ctgcccaaaa ttcttattat atttatgggc gggcacaggg cccgccccta
    15781 cagtaataaa atgaagatga aattactcga tatccaaaac ctatctgttg aaaccgaaaa
    15841 cagattacag ctggtcgaac cgattagcct acaattaaag gcaggaaaaa atattactat
    15901 cttaggcgaa accggctcag gcaaaagcct gctgattcaa gcgattatgg gggcgttacc
    15961 cgacggctta atcgcaagcg gtgaaatttc ggtaaaaaat tgcaaaattt ccaccgaatc
    16021 cgaccgcttg caaacattgt ggggtaaaac cttggtaatg ctgccacaag agcctcgccg
    16081 ctcgcttaat ccgattatgg caatcggcaa gcagttgtgg gaaagttttc actatgtggc
    16141 aggcaaacca tcatctcaag ccaaaacgga aagcaaagcc tatttagcca aacttgggct
    16201 gggcgaatcg gttgaaaact acccacacca gctttccggt ggaatggctc aacgtgcctc
    16261 ttttgcgatt gcaactgccg ccggtggcaa aattttactt gccgatgagc cgaccaaagg
    16321 gcttgaccca atcagtaaag gcaaagtgat tgaactgtta aaatccgcct accaaaacgg
    16381 tggaggcttg ctcaccatta ctcacgatat tgaagttgcc gagcaactcg gtggcactat
    16441 tttagtgatg aaaaaaggcg aactgttgga gcaaggtgag gcaaaagcgt tgttaaataa
    16501 cccacaacac ccttacacca aagcacttat cagtgccgat ccaaaacatt ggcaaccatt
    16561 gcaagatctg caaaatttaa gccaaaaaca accgcttgtt tcggttaaaa atttgagtat
    16621 tgcccgtggt aagaaaacgc tgtttagcaa cctttccttt gacttacaca aaggcgaagt
    16681 gcttgggatt gtcgggcata gtgggattgg caaaagctcg cttgccgatg tactttgtgg
    16741 tttgcttaag ccgaaatcgg gcgaggttgt gtggcacagc cacagccata aaaaacacca
    16801 agtgttgaag ctttaccaag acccaccgga agcctttgct ccgaatgtca gtctaaaaac
    16861 cttgcttgat gatgtgatta acaagcacca attagatcga ctgccgattc caagtttact
    16921 gcaacaactt tcgctcaacc cagaaatttt gcaacgcaat gcggaaaatg tctccggcgg
    16981 cgagctacaa cgagtagcaa ttttgcgagc cttgctctta gaaccggtac tactgtttgc
    17041 cgatgaagtc acttctcggc ttgacccaat cacacaacaa gaaacgatag aattgctgat
    17101 caaccagtgc cgagcgagaa attgcagtct gattttggtc agtcacgatc cttatctaat
    17161 tgagaaatcg tgcgataaag tgattaattt ggaagagtat gtgggctaac aagcggttca
    17221 atttctgaga ttttttgcgg ctctaaaaac aaaaatgcga agacatcagt tcttcgcatt
    17281 tttcttactt attccttatt gcccagccag cttctgccgt acaatttcaa acagacagac
    17341 cccggttgca actgagacat tcaaagaaga tactgagccc gccattggaa tgctgataag
    17401 ctggtcgcaa tgctcacggg taaggcgacg cattccgtcg ccttctgccc ccataactaa
    17461 cgcaatcgag ccggttaatt ttgcttcata aatgcccgat tccgcctcac ctgccgtgcc
    17521 gacaatccag acattatgcc gttcttgtaa atctcgcatt gtgcgagcca gattggtaac
    17581 tcgaatcagt ggcatcactt ccgctgcccc acaggcgact ttgcgagcgg ttggtgtaag
    17641 ctgagcagat ttatctttcg gcacaataac cgcatcaacc cctgccgcat cagcggtacg
    17701 caaacaagcc cctaggttgt gagggtcggt cacgccatct aaaatcaaca agagtggatt
    17761 tttcttttgg cttaagatcg cctctaaatc gtgttcattc agctcttttt gtggcacgac
    17821 tctggcaata atcccttgat gcacttcacc ttgcgatttg ttatctaagg tttggcggtt
    17881 cacttgttga attgccaccc ctaaacgttg taattcattt aatagtggca ttaagcgttt
    17941 atcttcacgc ccttttagca ccagcacttc aattaaacgc tcaggtgcat tatccaaaaa
    18001 ggctttcact gcgtgaatgc cataaatttg ttcgctcata ttttatcctt aataattggg
    18061 cgaacccatc agctcgccca tataaatacc taactaaagc aacatcttca caattttatc
    18121 caacttaacc ctgccgaatt ttttcagcaa tttacgcaca ttttcagggt aatcggttaa
    18181 aacttccaaa tcactgtagt gagttaaaat ctgcgtatgt tggcaaattt ggtttaactc
    18241 cgtttctgct ttttcactta attgatgttg aggatcggaa attaaaattg cattttcggc
    18301 atctaaccgc cacgctcttg ggttaaggtt attgccggtc agcaaaatat agcggttatc
    18361 cacccaaacc ccttttaagt ggtagctgtt ttcgccatct ttccataagc gaatggttaa
    18421 ctgtttattt tgtacataac cgtccaaccg ttttgcaaag gctcgtaagt tcttttcata
    18481 caaataaggc agagccgatg ccatcgtgaa tttttcgtcc ggcttggtgt agaaatcatt
    18541 agcggtttta tcccccacaa taatttcaac cgatttgccg tttgccaata gccattcaat
    18601 acgggttctc agagaatgcg gaaaattaaa atacggagtg caaatcgtta atttctgctc
    18661 agtttgataa aacaacgctt caatcacttt atttaactga ttcttacgtc gccctaagcc
    18721 tactaaagga gaaaccgcta agcgaccatt ttcagcaaca ccgttaaata aatacgcttc
    18781 ccgacttaat tgtttgcgga aatgcttaat ttgcgcacga atttcagccg ttttcgggcg
    18841 attttccgta tctaaacgtt ttaccgcttc attggttaaa agatgctgtt gaataaacgt
    18901 cacccagcta tcggcaagaa ctttattttc aatgacgtgg taacggtcat aacggtaacg
    18961 ttcaaattga tgcaaataca cattattaat gcttgctccg ctatacaaaa tcgtatcgtc
    19021 aaatacgaag cctttcaaat gcaatacacc aaacacttct cgtccgttaa tcgacacacc
    19081 gtaaaaggca atctcttgcc ctgccggtaa accttgttcg tatttaactt ttgcatacca
    19141 gtcggcgtta gataaattct ctgcctcacc aatacgccca cgttgggctc ggtgccaatc
    19201 aaccaaaatg ttaatttcca gttcaggatt atttcgcttc gcttgatata aagcagctaa
    19261 tacttcctgc ccggcttcat ctttttcaaa gtaaagagcg gttatataaa tacgcttttt
    19321 tgccgtttga atcagctgta aaatttgttg tttaaacgct ttgctcgagg cgagaaactg
    19381 aacctgctct gccacttgtg gtaagtatgg caggcttttc aataggtatt cagctttacg
    19441 ttgtttgttc aaaattaaca tcattgattc caaaattttc aatcgttgcc tgctatttta
    19501 cactgaaatc gccaataaag cgattttcgc ttaacggcat tgatagctgg tcaaacgatt
    19561 aggatcttct ccggtttgat aaattgcgac tttcggataa gcacaaagcg ggatctgctt
    19621 ggctttatta gggtaaagct caccggcttt ggcggcaata ctttccggct ccagtccttt
    19681 ctcaacccaa ttttcaaggg cagtgagcat atcaaaatca ttcaccgttg cccctcgccc
    19741 acaatggttc attgccgaca cgaaaaacaa ttttgcaaaa tgttgcggat tttcgaccgc
    19801 ttgttgtagg ctttgatacc aatttttgag atcaactgcc gaaaaaatcg ggtctgaaac
    19861 gccttgataa atcagcattt tgccaccgtt ctgcttaaaa gcggataaat caacttgatc
    19921 tgtatcgtga atgctcccta ccgctttcac ttgttcgctg gcttgatcca aatctacgct
    19981 gagtggatca cggctcggca ctctgggggc taaatagtaa tgggtcaaac ttttcaatcc
    20041 cattttaaaa ctaatgctgt tgggctgagc ggtttggcta tcacctaatt tccaatcccg
    20101 ccagccttta gcgttaatgc cggaatcata cgcccaaggg ctataaatca gctcgcctcg
    20161 actgtttttc gccccctcga aaatcgtttt gattaaagcg acttttttct gccccagttg
    20221 ctttgccacc atttccggct ggaaatcaca ctgttcccac gcattaatta aaccgtctgc
    20281 taagccgtct aacttatcgc aacgtgttaa tacgccattg gcaatcacat ctaaatcttg
    20341 ttgagtgagg gcttgggata aaattttgtc gccatcacca ttcttcggag caactgccaa
    20401 caaggctcga ttatcccata cttccgccaa gactgaacgg gaaacccgaa agccggggct
    20461 gcctgcaatc acaccgtcaa attcctgtgg ataacgcatt gccgccatca tcgcctcacg
    20521 accaccattc gagcagccca taatgtaatt gtgcttgctc ggttttcggt aaaattcggc
    20581 aatcaactgc ttggcaaccg tggtcacttt gccgatagag gcataggcat aatttgagcg
    20641 agcttcggga tctgcggtaa acactaaatc tcgagtggcg tgaccactgt cgttactcac
    20701 tactgcatag cctctgttta agccatttgc accactcgcc ccgtgcggat agagcttacc
    20761 aatggcaggg aaaatcaccc cacctacacc gcccgccccc tgaaataaga atttttcatt
    20821 ccattgttcg ggtaaacgta gctcaaattg aataccgtaa ggaacattat ccacctccac
    20881 ccgttttcca atttcacctt gtactaaaca gtaagccggc aactcagcag atttctcaac
    20941 ccattcagct ttataaatag ccgttttttc cggcgagtta gattttaacg cgacacattg
    21001 ttcagccata gaattagcca aagcagtgtg agaaaaaacg gagagaaaaa taaaaagaaa
    21061 agcgattatt ttcatcattt acatcaatac aagcggttat ttttccgaaa atttttgcaa
    21121 attttaaact gagtgtctat ctatcgctgg aaaagctaag gcagagtttc ctctgcctta
    21181 gaaagatgaa ttgaattaca ttttaagcaa acaagcgttt ttcgccttcg ccggctacgt
    21241 tttccacaca acgtccgcaa acttcttcgt ggccagagtg cgagccgatg tcggtagcat
    21301 aatgccagca acgagggcat ttctcaccat ctgcattttc cacttttact gcgagtccgg
    21361 ctaattcgcc ttccgcaata tctgcttccg ccagtggttt aacaatcgct tgtgaggtaa
    21421 tcagcacaaa gcgtaattca ttgccaagtt gttctaataa cgggcgaatt tcatcattgg
    21481 cgaataccgt caccttggct tctaagccag caccaattac tttgtcttta cgggcttgtt
    21541 ccagcacacg gttgacttcc gcacgcactt ttaagatttg ttgccagtaa gcatcatcta
    21601 atttatcttg ctcggttaaa ccgaataatc cggtgtagaa ttcttcggta aagacaaatt
    21661 cacttctgcc ttccacctgc ggtaagtagc cccaaatttc atcggctgtg aaggataaaa
    21721 tcggtgcaat ccaacgtact aacgcttctg caatatgcca taacgctgtt tggcagctac
    21781 ggcgggcaag gctgtcggct ttggtggtgt attggcggtc tttgataata tctaagtaga
    21841 aagaccccat ttcaatcgag cagaaacgca ttaaacgctg tactaccgtg tggaattggt
    21901 agttatcata ggcttctttg atgtcgtttt gagcctctaa agcacaagcc accgcccagc
    21961 ggtctaaggc gatcatctct tgcggttgaa ctaaatcact ttttggatcg aaaccgttca
    22021 agttcgccaa taagaaacgg gctgtgttac gaatacggcg gtatgattcc ccggcactgt
    22081 ttaaaatatt gtgcgaaacg gtaatctcac cggtatagtc ggtggaggca acccataagc
    22141 gtaaaatatc tgcaccgttt ttgttccaca cttcacttgg cacaattacg ttgccaagcg
    22201 atttggacat ttttctgcct ttctcatcta cggtaaaacc gtgagttagc acttgtttgt
    22261 atggtgcttt gccgttagta gcagtggaaa gcattaaaga tgacataaac caaccacgat
    22321 gttggtctga accttctaaa tacatatccg ctgaattgcc gttaaattca gggcgttgtt
    22381 ctacaacaga ggcataggtc gatcctgaat caaaccacac gtctaaggta tccggcactt
    22441 tgcggtaatc tttggcttct tcaccgagca attccgcagg atctaaatcc caccacgctt
    22501 gaatgccttt ttcttctaca cgtttcgcca cttcttcaat taattctaaa gtgcgaggat
    22561 gtaattcttc ggtttcatta tgcacaaaca tcgccattgg cacgccccaa gtacgttggc
    22621 gtgaaataca ccagtctggg cggtttgcca ccatcgtatc aatacgagct tcaccccagc
    22681 ttgggatcca acgcaccgat ttgatttctc ctagtgcttg ctggcgtaag ccttgggttt
    22741 ccattccgat aaaccattgt ggggtagcac ggaagataat cggggttttg tgtctccaac
    22801 agtgcggata actatgcttg atgcgggata attttaataa tgctcccact tcttgtaatt
    22861 tttcgactac tttatcgttg gattcaaaca cacctaagcc ggcaaagaac ggggtgtctg
    22921 ctttgaattt accgtcattg gaaattagcc ctgccatttc aatgttatat ttgcgagcga
    22981 ccacgaagtc gtccgcaccg tgatccggtg cagtatgcac taaccctgta ccaccgtctg
    23041 tggtaacgtg gtcgccaaaa ataaatggca cgctgtaatc atagaatggg tggttaaagc
    23101 gtaataattc taagttttcg cctttggtgg ttgctaaaat ctcagcagat tcaacgcctg
    23161 ctgcttttgc aacatcttcg actaaatcga ccgctagtaa cacacgctca tcacctaatt
    23221 ggactaaggc atagtctaat tcagggttga tcgcaatcgc acggttagac ggaatagtcc
    23281 aaggggtagt tgtccaaata accgcagata atgcccctct acctttaccc tgtgcgttga
    23341 atttttcttc taccgcattt acgtccacag cattaaaacg cacataaata gagggagaaa
    23401 ctttatcttc atattccact tcagcttccg ctaacgaaga tccacaatct aagcaccaat
    23461 gtaccggttt tgaacctttg tataaatgcc cgttcgcaat cactttgccg agcgtgcgaa
    23521 taatattcgc ctcagtgtta aaattcattg ttaggtatgg gttatcccaa tcacctaaaa
    23581 tacccatacg gataaaatcg gctttctgac cttctacttg ttctttcgca tagtcacggc
    23641 acgcttggcg aaactcggca gccgaaattt tctcatttgg tttaccaaca atcccttcta
    23701 ctttcagctc aatcggcaaa ccgtgacagt cccagcccgg cacataaggg gtatcgaaac
    23761 ctaatgcggt tttcgatttc aaaatcatat cttttaaaat tttattcact gcgtgaccta
    23821 agtgaatatt accgttagca tacggaggac catcatgcaa aataaaggtt ttcttgcctt
    23881 tcgaggcagt acgaattttt tggtataaat ttttgtcata ccaatttttt aacatatcgg
    23941 gttcacgttt cgcgagatcc ccacgcatag gaaagcctgt ttcaggcaag tttaaggtgt
    24001 ttttgtagtc aatagtcatt tttttatttc tcgttaaaat tatctgtttt atgcctagca
    24061 cggcatagcc gtactaggtt aagcatagct cagcccctct ggggctggaa actagaaagg
    24121 ctcaccttgc aaattcctta aaaaattcaa ccgcttgcaa gcgatctttc tcaatctggg
    24181 cttttagtgc ttcaaagtcg ggaaatttta tttcattgcg taattttttt aaaaagatca
    24241 cttcaatcgc ctcaccgtaa atagaggcat tgaaatcaaa aatatgcact tctaataacg
    24301 gcttagtacc gttaatggtc gggcggttgc cgacattggc gattccgtta aaactgccct
    24361 gtttggtctt cacttttacc gcaaataccc cttgaatcgg cgtaaccaaa cgattgagca
    24421 taatatttgc ggtaggaaaa ccaatggttc tgccgagttt attaccgtgt gcaacgcgtc
    24481 ccagaatcga ataaggcttg ccgagtaatt tctctgccaa atctaactca ttgttttgta
    24541 aggcttctcg cactaatgag ctgctaattc tttcttcgtt taagctatgg gtatggcttt
    24601 cttccaccgc aaagcgatat tttaagccgg cattgcgtaa agtttcaaaa ctgcccgccc
    24661 gttttgcccc aaagcgaaaa tcatcgccta cacttaaata gcgtactttc agtcttttag
    24721 cgagcaaatc gctgatgaaa tcgtctgccg aaatttgagc aaatttttca ctaaaacgca
    24781 cgcatagcac aaaatccaca ccggcttctt ccaaatattt tagcttatct cgcaggcgca
    24841 ttaagcgggc gggcgggtta caagcggttg aatttccact tttttttgca aaaaactctc
    24901 gaggttgtgg ctcaaataac atcacaactg agggcaatcc taaatctaaa gctctatcac
    24961 aaagacgagc caaaatattt tgatgcccaa gatgcacacc atcgaaattc ccgatagaga
    25021 gaacacagcc ttgatttaaa gcgatgtgtt tgtctaagtt gtggaaacct cgaataagtt
    25081 gcataaaaga taaaccattt tataagtgaa aattgctgtg attataacga gaaatctaca
    25141 aaaaaggaaa aaaattcaat ctgttatatt tttttagtgc tgaaagtgg
//
LOCUS       DANLZD010000020        24208 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.020, whole genome shotgun sequence.
ACCESSION   DANLZD010000020 DANLZD010000000
VERSION     DANLZD010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 24208)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24208)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24208
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.020"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(45..1157)
                     /locus_tag="PXE26_000588"
     CDS             complement(45..1157)
                     /locus_tag="PXE26_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593199.1"
                     /translation="MKNNKTDTLLFLEQFARYLTAKSWQIAFELEYAVIWQKDLGHRI
                     LEVTLPKPIAEDREEVLQKALEKLAKIEEKNVETLKLNISNQYTDKLSVRVIGESVKD
                     GTIPLNEGVKLFEKTKHLINALALSAKKKKAAFGHNSGGKDVAEFMSQVRLGQTQIGS
                     YIVNLSYPVENIEIKEQNEIIQAISFSRSVSHNLVNSLNKLKEKITHYDHNPTIFAEL
                     IPEGVSHNLCEAIIGLSGSDQQRKIEIKLQVGEISDESMPSETFNIKFSQKEIKVIQV
                     ASRYYQGEYTLPHYEIIGKVVGLHSSNLADGGYIQVPCKIEDKTVDIRVDLPPEQYKL
                     AAEAHKTEQQIRCKGENLYINKKKGRLQKLTSINIL"
     gene            complement(1154..1657)
                     /locus_tag="PXE26_000589"
     CDS             complement(1154..1657)
                     /locus_tag="PXE26_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4365 domain-containing protein"
                     /protein_id="HDL5593200.1"
                     /translation="MLSPTQQMEQFNIAYVLAITANAGFNHAVPVVDNHSVDLAISAE
                     FPTEEGKRSDPEIKLQLKSEGDLHIKNGLVSYKLKKKNYDDLRKNCANPRYLIVCDLP
                     KKTTQWLSHKKKFMTLKRHCYWVSLKGFPATTNRSSVTLTFPENQRFTTDVLIKMIEY
                     ARVGETL"
     gene            complement(1662..2393)
                     /locus_tag="PXE26_000590"
     CDS             complement(1662..2393)
                     /locus_tag="PXE26_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5593201.1"
                     /translation="MRPLKEIRYDNLLRLIDEAKSTSDLANRTGIAVSYLLQIKNKNA
                     IQNGKPKGIGDKIAAKLEDGMNKPRGWLDQIHSEQSNLINSRIGNEEQKLQEQDLNDF
                     IIIDVLDVSASAGFGSSSELVEVVNQMRYVPEQFYSLFRNMAPRYIRIINLSGDSMYP
                     TFSSGDMLFVDISVNEFTGDGVYVFTYKGHLYVKRLQNTGDQILVISDNKLYEKWSIT
                     EENQDQLFIHARVKVHQSQQLNFIG"
     gene            2520..2744
                     /locus_tag="PXE26_000591"
     CDS             2520..2744
                     /locus_tag="PXE26_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5593202.1"
                     /translation="MQLQEYIEKSKWGEISRLAKAIDVAIPIVSFWVNGKRQVPAKRC
                     PEIEKFTEGKVTCEELRPDVDWAVLRNSGK"
     gene            2793..3554
                     /locus_tag="PXE26_000592"
     CDS             2793..3554
                     /locus_tag="PXE26_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HDL5593203.1"
                     /translation="MKSQSLLPITAQNASGAEVKISSIEIAELCEKQHKNVIVDIRKM
                     LAELKLNSADFSAQYQTKDGRMQPCYFLPKRETMILVSGYRIDLRAKIIDRLDELEKQ
                     HQPSIPKNYPEALRMAAELAEQNQVLLLEKQQTTAENHALKSYFEPGLTPAQFVKGLN
                     GVNSNKINDYLRSRGWLYKDKHCWRVFSHVRDKYLTESFKRIEVDPVERIEMATYKPI
                     LLEKGAVKIFEAYLQGKLPMKADWNGKYYHSKVAV"
     gene            3551..4342
                     /locus_tag="PXE26_000593"
     CDS             3551..4342
                     /locus_tag="PXE26_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5593204.1"
                     /translation="MSMLLMVKAMNCTVGNSARKLVLLKLADNANDDGVCFPSYQFIA
                     DKCEMSKRSAISHIDELIKMGYVSKKSRKNKDGSSSNLYQLHLDAPSEKSALGGENFA
                     PGGSENSAPITSHSINQSINHNTSEQNSDGVDKKSKYRFSDNDMAVAKWIFKRVKQLA
                     PQTKESYLPNWANEVRLMVERDKHTHQEICSLFKFATEHHFWGRNILSVVSLRAKWDR
                     LNLERQSSLRPNNIHSATGNGDIQDTTGFSKGLVVDVGGGTKWEF"
     gene            4330..4965
                     /locus_tag="PXE26_000594"
     CDS             4330..4965
                     /locus_tag="PXE26_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HDL5593205.1"
                     /translation="MGILATTTQNQVLPVEIVEQAEVETTKIFNRLKATHLGWRANIK
                     SQAEYDNARREWVRLLIENRLTPKEVERGLKIADTDKNPYLPSFGQFLEWCKSIDYAE
                     LGLPDMDQFLKRLNHFSAFGFTEIDNFKFRSNAEYWLLTDLYERNRKHSWKDETLRNQ
                     AEKALVEMAKRIMSGEQIPPPKPVIEEKKKVPIDPRIQRILDEKKQAGAMQ"
     gene            4962..5534
                     /locus_tag="PXE26_000595"
     CDS             4962..5534
                     /locus_tag="PXE26_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5593206.1"
                     /translation="MTDFDKDTYQTPNYVRNWLNHRYAWFHIDGCSNGKNALYSHWIG
                     KAAEGLDEDTLSGQIAEDFLAENLLDVILECVADWGELLRIFVNPPYSNPLPFVQRAA
                     ELKKAGHIVVMLLPADKSTRWYQVIQENASEVIDIIGGRINFINPLTDEEVKGNSKGS
                     MVAVFDPFVEGIVTRQMPLDKIKELGGYEK"
     gene            5604..6632
                     /locus_tag="PXE26_000596"
     CDS             5604..6632
                     /locus_tag="PXE26_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HDL5593207.1"
                     /translation="MAEGLLLTPYFQTEVGIVFYKVPKDVSLAAFGERTLLQPAPTDL
                     ATVKSGKVANFSANSTACKELAEFAKSAKVRSTLNQRDKYSNDLPYTRFVKSIQTCQC
                     RDGKYCHHEKVFVENEKGAVQLCWYHDKMRMDGEIPNEKLEALADENWEKFIAQQIRL
                     TLRKTQSSAIEFADLVLFASIKGLLDELDSNALQQFLGYPPLNNSGVSKESNIGFDDV
                     PNARANLKKWAETLKLKVEPEPLAAFMAKPKLQRFEWRKWLQFVKAQPCMCCGQQADD
                     PHHIIGYGGAMGSKQHDLFTLPLCRIHHDELHRNVGKFEQDYGSQLELLIKFLDRAIG
                     LGALEIDG"
     gene            6625..6984
                     /locus_tag="PXE26_000597"
     CDS             6625..6984
                     /locus_tag="PXE26_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HDL5593208.1"
                     /translation="MVELVLPYPPSVNDYWRWVSKTRRVVCKRGKDYQWATFLAAQNK
                     PKFGGQVEIKCDVYFPDNRDRDLDNLGKCILDSLVYSKVIVDDSRHYVKKLTFEDKGN
                     QKGGAVIVRIKERLDVN"
     gene            6974..7333
                     /locus_tag="PXE26_000598"
     CDS             6974..7333
                     /locus_tag="PXE26_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593209.1"
                     /translation="MLIDIKGILRFWGYSANGRLGTEFPCVAAGMKPAVSASNHRILR
                     LTDESIFEIDRCIKQLKEQEPQQYEVLIGRYAARVSDTQIEKVLGISHSTFKRELAQA
                     EMYVLGVVVGLKLALVV"
     gene            7413..8219
                     /locus_tag="PXE26_000599"
     CDS             7413..8219
                     /locus_tag="PXE26_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL5593210.1"
                     /translation="MKKLVLVTALSLVLSACGSGGGGGSSASNPNKEATPQSPSKSET
                     KSDTSSQNQVKGALSKVSADLQEQVKALKQINVDGRIIELAQEPIGFIEKDLDNGKKG
                     KAYNLAYSSIGYVLPKDVKTDEYGRVIDERASANDVGIFGLATKFQDLPKSGTAHYSG
                     VSFGANSEGKLTLTADFGDKKVNGSITERKLLSNNQALSSINLLSAPISQTKFAGEEI
                     HFAGIAQANVEGNIVQAPYGGKFMGPKAEEVVGFVADDHNDPYEVFAGQK"
     gene            8383..8730
                     /locus_tag="PXE26_000600"
     CDS             8383..8730
                     /locus_tag="PXE26_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin, lambda family"
                     /protein_id="HDL5593211.1"
                     /translation="MPEKNPDIYTQAWNYFAMFVSNHSSFICAVIIAFFTSITKSFLY
                     GKTDTPKRVFAEAILCAVIAGSLRPILIYFNADVSLITPIGAGIGLLGTSAIRQMILK
                     FLNKKAGVDDNVN"
     gene            8720..9316
                     /locus_tag="PXE26_000601"
     CDS             8720..9316
                     /locus_tag="PXE26_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 19 protein"
                     /protein_id="HDL5593212.1"
                     /translation="MLISERKFKQVFPSAIDGIYAEIAKHIEKAGCKTKEQQAMFLAQ
                     CGVECAGYKTFEENLNYSATALLATFPKYFTQHNVVLYARDKRAIANRVYANRMGNGN
                     EQSGDGWKYRGRGLIQITGKANYIEFAKWEGLPSLVTSPDQITDNLALTVQVAVWYWQ
                     SRKLASYGSDILKVTKLINGGTHGLSQRTNYYQRLMVA"
     gene            9317..9667
                     /locus_tag="PXE26_000602"
     CDS             9317..9667
                     /locus_tag="PXE26_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2570 domain-containing protein"
                     /protein_id="HDL5593213.1"
                     /translation="MSKYIYLVATILILGLCGWIWQQSKQINTLRAENQTQAQTIEQQ
                     QKANQRLADKLEQERQAVEKIRKSANEMRNKVEIVQNEIKSILAQDSCAKADLPNGVA
                     DSIKRLHRQNNHKH"
     gene            9672..9845
                     /locus_tag="PXE26_000603"
     CDS             9672..9845
                     /locus_tag="PXE26_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593214.1"
                     /translation="MYPPAAYLVPCERTEFSGNTYGDTVEYLIKVMGERDLCANQIDR
                     IREWQAQTKQGFK"
     gene            9981..10379
                     /locus_tag="PXE26_000604"
     CDS             9981..10379
                     /locus_tag="PXE26_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593215.1"
                     /translation="MIVKLKLGAVVVLSQVKQATIAYAGSEAYQTAIEQAKKGLLDED
                     KGKPFETVLHFPAVYADEDGQEEICPEQIATTVRSDNVSGEPVAVVLIPDDNVVGELQ
                     SIFIYKTDYAEIFTDNGVKLSAVRTSPAPR"
     gene            10527..11003
                     /locus_tag="PXE26_000605"
     CDS             10527..11003
                     /locus_tag="PXE26_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1441 family protein"
                     /protein_id="HDL5593216.1"
                     /translation="MDNLFDLKLNINQIAELTGLHRQTVSQRVAGLNPALGSNSKLKL
                     YALRDLILTGLAEKMSADVDSLSPADRRAWFQSENERLKFEKEIGELIPASEVALEMS
                     ALAKTVVQALETLPDILERDCGLQPKDLIRVQQVTDDVRDQMALHIQEVTTDTENE"
     gene            11003..13114
                     /locus_tag="PXE26_000606"
     CDS             11003..13114
                     /locus_tag="PXE26_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010786315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
                     /protein_id="HDL5593217.1"
                     /translation="MFASAKEIRRDIANAIKAPRRMRVSEAVAEYMRVPLGGGNSVKW
                     DKHTAAYMLEPMDCLNSREYDAVIFVGPARTGKTIGLIDGWITYSIICDPSDFLLVQL
                     TQEKASEHSRKRLDRTFRCSPEIAKRLSPRKNDNNVHDKYFRAGNLLKIGWPSINVLS
                     SSDYKYVALTDYDRWPEDVDGEGDGFSLASKRTTTFMSAGMTLVESSPGKDIVDLKHI
                     PKSTHEAPPTTGILSLYNRGDRRRFYWQCPDCSEYFEPSMANMVGYREDSDFVKASEN
                     ARLQCPHCQTLIAPELKRELNIKGVWLKEGQKIDASGQISGESRKSRIASFWLEGPAA
                     AYQTWAQLTYKLLNAEHEYEMTGSEETLKAVTNTDWGLPYLPRSALEQRRSDELMERR
                     EEVEEKTVPAQCRFIVAAVDVQGGKNRRFVVQMVGYGENGERWLIDRYNISHTLPDSD
                     GVIEKIDPRIPDDWYILISDVLEKRYPLAHNPNHFMPILAMAVDSGGEDGVTDNAYQF
                     WRKCRRDGYAKRVYLVKGDSTKRQKLITKTYPDNTARSDRHSSARGDVPLYLLQTDYL
                     KDRINNALFRDTVGANYIHFPDWLGEWFFNELTYEERGADGKWRKPGKGNNEAFDLFC
                     YAHAIAILRGYERIKWGDENDVPSWAKLPDINPNIIRETPRTAEQAVEIEEKSEKPQP
                     KPTKAKSSWLSGGGRKTGGWL"
     gene            13111..13335
                     /locus_tag="PXE26_000607"
     CDS             13111..13335
                     /locus_tag="PXE26_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593218.1"
                     /translation="MSLYTIDELKQKIRTLDEKIETAQSQVSFNGRSVSYQVAELTKQ
                     RDRYQTMLDEQLAQSGQRTKQHRIKYARFI"
     gene            13335..14834
                     /locus_tag="PXE26_000608"
     CDS             13335..14834
                     /locus_tag="PXE26_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDL5593219.1"
                     /translation="MNFLEKTIATLSPKWAANRSRNRYVLNAYEAAQPSRTHKASRES
                     KGANSTVRQSAVSLREQARALDQNHDIVIGILDKMEERVIGSKGIHIEPQPLTLAGEV
                     HEELAGQIRKLWAEWSVKPDVTGLYTRPLLERMLLRTWLRDGEVFVQLVKGKVAGLEH
                     GSQVAFSLEALEPDFVPMQSDEAKNGLVQGVFLNAWRKPTAYQVYLDNPQESNGMYGK
                     VKTVPADNMLHLAFRKRLHQIRGVSMLHGVIVRLADLKEYEESERVAARIAAAMTMYI
                     KKGDAALYDDDSNSDGERLFDIAPGAVIDDLKPGEDIGLINSNRPNVNLETFRNGQLR
                     ATAAGTRSSYSSIARDYNGTYSAQRQELVESFEGYAVLQDAFVAAISRPIYREWLKMA
                     IASQAIKLPPDIDQNSLFNAVYSGPVMPWIDPIKEANAWKERIKGGLATEGQAIRASG
                     NNPAEVKRQRIVEIKENQAEGLKFDTDLTNYGGQDKSFSNQKDEINEDE"
     gene            14846..16807
                     /locus_tag="PXE26_000609"
     CDS             14846..16807
                     /locus_tag="PXE26_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HDL5593220.1"
                     /translation="MKTWFNIQAKANDTAEISIFDEIGFWGVTAQQFAKDLKALGNNL
                     KQINLHIHSPGGDVFDGIAIYNLLKNHPANKTVYIDGLAASMASVIAMAGDEIIMPEN
                     AMMMIHKPWGIQGGDADDMRKYADLLDKVESTLIMAYVAKTGKYETDLAEMLKEETWL
                     TGKECVEQGFADKLAEPLVAMACIQSKKLEDYTKMPDKIKNMLFAPQGNAGANPKHEQ
                     PQTPPQAGENPQNVAKPDAMVALAQRNATIKATFAAFGTQFDGLLAECLADVSMTAEQ
                     AKDKLLAKLGENTTPSVPQNHIHAGNGNIVGDSVKQSLMARAGQDTDKTNARDNAYNA
                     MTLRELARASLVDRGVGIAGYTPMQMVGLAFTHSSSDFGQILIDVAHKSLLKGWETAT
                     ENYEQFTTRGTLTDFRPAKRVGLGEFGYLPEVGEGEEYTYGTIGDEGASVALATYGQL
                     FSITRQAIINDDMHLLTKIPEKMGAAAKATITKLVFALITGNATAQDGKKLFDATHKN
                     SLTGAALNVENIDKAIQLMNGFVNSRGEPLSIEPEFMLLPTSLHTKAKQILGSSSVEG
                     ADINSGIINPIRDIVSPIKSPRLQIADPKSWYLLNKEAIEVSYLDGVDSPYIEQQHGF
                     TVDGVSTKVRIDAGVNVIDYRGVVKVTNA"
     gene            16881..17204
                     /locus_tag="PXE26_000610"
     CDS             16881..17204
                     /locus_tag="PXE26_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2190 family protein"
                     /protein_id="HDL5593221.1"
                     /translation="MAKNYIQDGNTVRLTATKAITSGDVIVAEDLIAIAVSDAAKNDA
                     VVGLTTGVFSVKAKQADDIKQGAVLYWSETEGATLTAGSNKRLGIAWKDSGTSSNQVD
                     VKINV"
     gene            17197..17499
                     /locus_tag="PXE26_000611"
     CDS             17197..17499
                     /locus_tag="PXE26_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5593222.1"
                     /translation="MSSPFEQAIAAADQTIQQTMMSEWLIGGKPYPATFDEAPAIFNG
                     LHSTDDRAIHGTERTLTLFRASGYKPRLDDRVSGNGKKYLVKSYHFVDQLIVLQLE"
     gene            17503..18027
                     /locus_tag="PXE26_000612"
     CDS             17503..18027
                     /locus_tag="PXE26_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5593223.1"
                     /translation="MGSQVTGLKELQASLKKIARQTVPKAAAQAIRTVGRQAMNKAVK
                     SVAAEIGVNQKTIKGRAKMTAKPTPSRLQATIKVNRSHMPMIRVLERKSNRLSPTKGS
                     IRVGKHTVQRGFRQRLANGRTHIMYRQGRKRYGIDVAKVPLSQPLTQAFDRELKNYPE
                     QVQAELAKQIAGKL"
     gene            18024..18419
                     /locus_tag="PXE26_000613"
     CDS             18024..18419
                     /locus_tag="PXE26_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5593224.1"
                     /translation="MKIHTKIRKEVLELLQTKLPEIDNFYNGLPTFIDIEEEQLAVSV
                     YLDDISLQEITVCNNQWDAKLNITIHLKSTESAEDELDEWAEKIREIIDDYPEFEHLE
                     SVALSQYQYEQDQNQRTWHMATLIFDVEY"
     gene            18447..19088
                     /locus_tag="PXE26_000614"
     CDS             18447..19088
                     /locus_tag="PXE26_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593225.1"
                     /translation="MAKTTKVQGTKFRISVGREAQKAITAINLNTATLTIASSGYKKG
                     DAIELTGCGQLDGIYPVLSVTTDQVKLCEEVNWTGKDLPANYTKAKAALVQYSEQFCA
                     VKNIEKSDDTLSTEDVTTVCSEGTETEPGEIEFGSIKLSFFHKPTTEMQTRLRKLFYD
                     KSTFAYKLELPDNHGTTYGEGFIEAGNGFSGEVKGKYEGSVSIKPSKRDYLLV"
     gene            19172..19573
                     /locus_tag="PXE26_000615"
     CDS             19172..19573
                     /locus_tag="PXE26_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593226.1"
                     /translation="MTLREKLLANKPKLQPIEINGETYYLREATVGDMNKQIFETRSW
                     LIQQAEQENVELPAEDDETFDEALNRFGEKYRLAQSVAYRLCDENGVLLFNPLDINDL
                     NAIAELDSKVIIDFNQAVSAPKDSASEESSK"
     gene            19618..19848
                     /locus_tag="PXE26_000616"
     CDS             19618..19848
                     /locus_tag="PXE26_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HDL5593227.1"
                     /translation="MPERHFAEYRLFYQEQPFGLWRDDYRTAQLAHLTAMFNRDPKGK
                     APKLAEFMPFFNRTDEVEEIEDDGVADYLAKR"
     gene            19911..20138
                     /locus_tag="PXE26_000617"
     CDS             19911..20138
                     /locus_tag="PXE26_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593228.1"
                     /translation="MFEALDRFMINTIKIAIIVFLVACIFISMPNWWIASILVLFPTA
                     YLLDKYWWRNTEMYRRKMDKLVEEMKNNRQI"
     gene            20192..23758
                     /locus_tag="PXE26_000618"
     CDS             20192..23758
                     /locus_tag="PXE26_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
                     /protein_id="HDL5593229.1"
                     /translation="MSSSNRLTITLDVENSKLLAGFAQSDTVANKFARSFIVNMDQAQ
                     QKARQFADRSTKYLKNIEQAANNLNSSVSKERFWQIANRLQFPTSKVISYANSYTELG
                     NKLKLVTESESQHARAMAAVYDISLKTAQSTQATSSVYQTFAQNAKQLGISQNDVAKL
                     TETVAKSVAISGASSATASNALVQFSQSLLMGKLKAQEFNSLMTQTPSVIQAIAKGLG
                     ITTAELKAMVDNGEMSAEKMIEGLKKAESYVNGQYAKTTTTISGAMQNLSTAAEKWVG
                     EMDSTVGVSQKAVAVLNALNANFDTVAKTVLVAGGAFALFKGYMNVRPFIESRAAIYE
                     NQKAIIAENQARQQAMAIRQQELVGLSQQTALKLEQTLQTYNQNKAELEAIAVKQQKI
                     TKEREEIAVAIQAAATRSERLALSAELQALDQKEITLGQQKIAVERQQIAAKQALKVA
                     YAENAVAQSAMSAGMITATTTTRAMNGVLAAARAELNLLKAAALSNPLMTLAMVATTA
                     GTALWGFFESQKAAREEALRYADSLDSVRVNIEKMTKAQTDAEMVKLSRSIKEQETAL
                     ANLKQRQAELTREIEQGATVYEDAFAGTVRVTMSAEELAKKQEELTLVTADAEKAQKT
                     LNSSLEAQEALKAHIPIANLREEFVKLYPHIDESQIKVDGLNIAIGNFTVKSPEMVIA
                     TNNIANALGGVAGEAMRAAILVANLSSMKLDANGAAIIDPKHLEKIEQIERNNAIGSA
                     KGKDKIALQVKDALIKSGMKEGDAGYERLKAAYEQQFTLQNAPKGKGGKTKAEKEAEK
                     AAKKQQSYQNQVAEMTNRLAGLKANASDIAIFGQVSDYQEVRKLTEDIAINAEKYKGY
                     GEQGVARLKELASQLESAQQQVAISQFAYNGGEKLKAMEFELTLLGKTRQEQELMQYN
                     HELDLEAARLKIGMADENIAKLDQEIVKLKERRAEIQAQAEQARGSFKQGMLDGLNNI
                     EADVSNVAANVANITQNTFDGMADSLTNFVMTGKADFRSFANSILSDLSKMIIKMMLF
                     NAIKQGATMLFGYQGPTTTVNGNAVYGLGTWATGGYTGDGGKYTPAGIVHKGEYVITK
                     EATARLGLDYLNYLNYGKRGFSSGGGVAVPRVPSSSYQPKSAQSNISVQVINNGEPVD
                     AKVSQKQQGDQMQITVELMREIARQEANGMIQNNFRAGGVFA"
     gene            23758..24087
                     /locus_tag="PXE26_000619"
     CDS             23758..24087
                     /locus_tag="PXE26_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5593230.1"
                     /translation="METLKWCVRTDLAVENTPEIMEVKFGDGYTQRSPKGLNNLLRAY
                     TGTIKVKKGEHLAVEAFFAKHRGVSPFYFKDPYTQQNKKVVCSSWPAKMVGLNHWEFS
                     VTFKEVP"
     gene            24087..>24208
                     /locus_tag="PXE26_000620"
     CDS             24087..>24208
                     /locus_tag="PXE26_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL5593231.1"
                     /translation="MPVSISNQMKLDLAKLEQNAMLDLYEVDLRTLKDKSGNAGS"
BASE COUNT         7542 a         4888 c         5476 g         6302 t
ORIGIN      
        1 ttgcagattt taggcaaaag aaaaccgcca cgagggcggt ttgtctataa gatatttatt
       61 gaggttaatt tttgtagccg accttttttc ttattgatat ataggttttc tcctttacat
      121 cgaatttgct gttcggtttt gtgtgcttca gctgccaatt tgtactgctc aggaggaagg
      181 tcaaccctaa tgtcaaccgt tttatcttct attttacaag gtacctgaat ataacctcca
      241 tcagctaaat tgctggagtg taaccctaca actttgccaa tgatttcata gtgtgggagg
      301 gtatattctc cttggtaata cctagatgca acctgaatta ctttaatttc tttttgagaa
      361 aatttaatat taaatgtttc agaaggcatt gattcatcac taatttcacc cacttggagt
      421 ttaatttcga tttttctttg ttggtctgaa ccacttaatc caataatagc ttcacaaaga
      481 ttatgactta ctccttcagg tatcaattca gcaaaaatag tcggattgtg atcataatga
      541 gtaatttttt ctttcagctt gttcaggctg ttaaccaaat tatgcgatac actccgagaa
      601 aatgaaattg cctgaataat ttcattctgt tccttaattt caatattctc aacaggataa
      661 gataaattga caatatagct tccaatttga gtttgcccta aacgaacttg agacataaac
      721 tctgctacat ctttgccacc tgagttatgt ccaaaagctg cctttttctt tttagctgaa
      781 agtgccaagg cattaattaa atgtttggtt ttttcaaata attttacacc ttcgtttagc
      841 ggaattgtcc catctttaac gctttcgcca atcactctaa cagatagctt gtctgtatat
      901 tgatttgaaa tattaagctt taacgtttct acgttttttt cttcaatttt ggcgagcttt
      961 tcaagtgctt tctgcaacac ttcctctcta tcttcagcaa ttggctttgg taatgtaacc
     1021 tctaaaattc gatgtccaag atctttctgc caaataaccg catactctaa ttcaaacgca
     1081 atttgccagc ttttggcagt taaatagcga gcaaactgtt cgagaaacag taacgtgtcc
     1141 gttttattgt ttttcataaa gtttctccta ctctagcgta ttcaatcatt ttaatgagta
     1201 catcagtggt aaatcgttga ttttctggaa atgtgagggt aacactactt ctatttgttg
     1261 ttgccggaaa gccttttaat gatacccaat aacaatgtct ttttaaagtc ataaattttt
     1321 tcttatgtga gagccattga gtcgtttttt taggcaagtc acatacaatt aagtagcgag
     1381 ggttcgcaca atttttcctt aaatcatcat agtttttctt tttgagttta tagcttacca
     1441 gaccattttt aatatgaaga tctccttctg atttaagttg tagctttatt tccggatcac
     1501 ttcttttccc ttcttcagtc ggaaattctg cagaaattgc aagatcaaca ctatgattgt
     1561 ctactactgg taccgcatga ttaaagcctg cattagcagt aatagctaac acataagcaa
     1621 tattaaattg ttccatttgt tgtgtaggtg aaagcatatt tctatccaat aaaattcaac
     1681 tgttggcttt ggtgaacttt tactctagca tggataaata gctgatcttg attttcttca
     1741 gtgatactcc acttttcata gagtttgtta tctgaaatca ctaatatttg atcgcctgta
     1801 ttttgtaatc tttttacata caaatgtcct ttgtatgtaa atacataaac accatcgccg
     1861 gtaaactcat ttacgctaat atcaacaaaa agcatatctc ccgaggaaaa tgtcgggtac
     1921 atagaatcac cacttaaatt gataattctg atgtatcgag gtgccatatt ccgaaagagg
     1981 gaataaaatt gctcaggcac ataacgcatt tgatttacta cttcaactaa ttcactgctt
     2041 gagccgaagc ctgcactagc actgacatct aatacatcaa ttatgataaa gtcatttaaa
     2101 tcttgctcct gcaatttttg ttcttcattg cctatccttg aattgataag gtttgattgc
     2161 tctgaatgta tttgatctaa ccagcctcta ggtttattca tcccatcttc taatttggcg
     2221 gcaatcttgt caccaatgcc ttttggctta ccgttctgaa tagcattttt atttttgatt
     2281 tgtagtagat agcttactgc gatacctgtt cgattagcta aatcagatgt gcttttagcc
     2341 tcatctatca agcgtaataa attatcgtat ctaatttctt ttaggggtct catatcccac
     2401 ctccatacta tttgctttat tttattatca tttcgataac atttaaatat gatctatttt
     2461 gttgattttg atttatcttt aagataatat tcacttatct tttaggtaag gattatgaaa
     2521 tgcaattaca agaatacata gaaaaatcta agtgggggga aatctctcga ttagctaaag
     2581 ccatcgatgt agcaattcca atagtttcat tttgggtaaa cggcaaacgc caagtaccgg
     2641 caaagcgttg cccggaaatt gaaaaattta cagaagggaa agtaacttgt gaagagctac
     2701 gccctgatgt tgattgggca gttttacgaa attcaggcaa ataaaaaacc accgctggaa
     2761 cggtggctaa ttacaaccta aggaggttta ttttgaaatc ccaatcatta ttaccgataa
     2821 ccgcacaaaa tgcaagcggt gcggaagtca aaatcagcag tattgaaatt gcagagttat
     2881 gcgaaaaaca acataagaac gttattgtag atattcgcaa gatgttagct gagctgaaat
     2941 tgaactcggc tgatttttca gcccagtatc aaaccaaaga cggcagaatg caaccctgct
     3001 actttcttcc aaaacgagaa acaatgattt tagtttccgg ctatcgcatt gatctgagag
     3061 ccaaaatcat tgaccgctta gatgagttag aaaagcaaca tcagccctct attccgaaaa
     3121 attaccccga ggctctgcga atggcagcgg agttggcgga acaaaaccaa gttttattgt
     3181 tggaaaaaca gcagactacc gcagaaaacc acgccttgaa atcctacttt gaaccgggtt
     3241 tgacccctgc tcagtttgta aaagggctga atggcgtaaa tagtaacaag ataaatgatt
     3301 atttacgtag tcgaggctgg ttatacaaag acaagcattg ctggcgggtg tttagccacg
     3361 ttcgggataa atatctgacg gagtcattta agagaattga agttgatcct gttgaacgta
     3421 ttgagatggc cacctacaag ccaattttgc ttgagaaagg tgctgttaag atttttgagg
     3481 cttatttaca aggtaagtta ccaatgaaag ccgattggaa cggcaagtat tatcacagta
     3541 aggtggcggt atgagtatgt tattaatggt taaggcgatg aattgtacgg tgggaaattc
     3601 tgcccgtaaa ttagtgctgt taaaactcgc tgataacgca aatgatgatg gtgtttgctt
     3661 tcctagttat caatttattg cagataagtg tgaaatgtct aaacgcagtg ctattagcca
     3721 tattgatgaa ttaatcaaaa tgggatatgt gagcaaaaaa tcacgcaaaa acaaagatgg
     3781 gtctagttca aatttatatc aattacacct tgatgcccct agtgaaaaat ctgcactagg
     3841 gggtgaaaat tttgcaccag ggggtagtga aaattctgca cccataacca gtcactctat
     3901 taaccagtca attaaccata atacgtccga acaaaattcg gacggggtgg ataaaaaatc
     3961 aaaatatcgt ttttctgata acgatatggc agtggcaaag tggattttta aacgagtgaa
     4021 acaactagct cctcagacca aggagtctta cttgccgaat tgggccaatg aagtccgctt
     4081 gatggtagaa cgtgataaac atactcacca agaaatttgc tcgttgttta aatttgcgac
     4141 cgaacaccat ttttggggca ggaatatcct aagtgttgta tctcttcgag ctaagtggga
     4201 tcggctaaat ctagaaaggc aatcatcatt acgaccaaac aatattcact cagcaacagg
     4261 caatggtgat attcaagaca caacggggtt ttcaaaaggt cttgttgttg atgtaggagg
     4321 agggacaaaa tgggaatttt agctacaacg actcaaaatc aagtattacc tgttgagatt
     4381 gtggaacaag cagaggtgga aacaaccaag attttcaacc gcttgaaagc aactcactta
     4441 ggctggcgag ccaatatcaa gagtcaagcc gaatatgata atgctcgccg tgaatgggtt
     4501 cgtttgttga ttgaaaatcg cttaacgcca aaagaagttg aacgaggttt gaaaattgcg
     4561 gataccgata aaaatcccta tttaccgagc tttggacaat tcctcgaatg gtgtaaatcc
     4621 attgactacg cagaattagg tttgcctgat atggatcaat tcctcaagcg tttaaatcat
     4681 ttttccgctt ttgggtttac tgaaatcgat aattttaagt ttcgttcaaa cgctgaatat
     4741 tggctcttaa ctgaccttta tgaacgaaat cgaaaacata gttggaaaga tgaaacatta
     4801 cgtaaccaag ctgaaaaagc gttagtagag atggcaaaac ggattatgag cggtgaacaa
     4861 attccacctc ctaagccagt aatcgaagag aaaaagaaag tgccaataga tccacgcatt
     4921 cagcgaattt tggacgagaa gaaacaagca ggagcaatgc aatgacagat tttgataaag
     4981 acacttacca aacacctaat tatgtgcgta attggctaaa tcatcgctat gcgtggtttc
     5041 acattgacgg ttgttctaac ggcaaaaacg cattgtatag ccactggatt ggcaaagcgg
     5101 cagagggctt agacgaagac acactaagtg gtcagattgc cgaggatttc ttggcagaga
     5161 acttgctcga tgtgatcttg gaatgtgtgg cagattgggg cgaattactg cgtattttcg
     5221 tgaatccgcc atacagcaat ccactgccgt ttgtacaacg ggcggcagag ctgaaaaaag
     5281 ccggccatat tgtggtaatg cttttaccgg cagataaatc tacccgttgg tatcaggtta
     5341 tccaagaaaa cgctagtgag gtgatcgaca ttatcggcgg acgtattaat ttcatcaatc
     5401 cgctcacaga cgaggaagta aaaggcaaca gcaaaggctc gatggtggcg gtgttcgatc
     5461 cgtttgtgga gggaatagtt acccgtcaaa tgccgttgga taagattaag gagctgggcg
     5521 gctatgaaaa ataacgaagg ctgggacggt ttagataagg cgtatcattg ccttagccgc
     5581 aacaaaaaga aatgggggca ataatggcgg aaggtttgct acttacccct tactttcaaa
     5641 ccgaagtggg tattgtgttt tacaaagtgc ctaaagatgt ttctcttgct gctttcggtg
     5701 agcggacttt gttgcaacct gcaccgaccg atttagcaac ggttaaatca ggcaaggttg
     5761 caaatttttc ggcaaattcg accgcttgta aagagttggc agagtttgct aaatcggcaa
     5821 aagttcgctc aacgctaaat cagcgtgaca aatacagtaa tgatttgcct tatacccggt
     5881 ttgtaaagtc aattcagacg tgccaatgcc gagatggtaa atactgccac cacgaaaaag
     5941 tattcgtgga gaatgaaaaa ggtgcggtac agctttgttg gtatcacgac aaaatgcgaa
     6001 tggacggtga aatcccgaat gaaaaattag aagcactagc ggatgaaaac tgggaaaaat
     6061 ttatcgccca acaaatccgc ttaaccttac gcaaaacgca atcttctgcc attgaatttg
     6121 cggacttagt gttgtttgcg agtatcaaag gtttgcttga tgaattagac agcaacgcat
     6181 tacagcagtt tctcggctat ccaccactga ataatagcgg tgtgagcaaa gaaagtaata
     6241 tcggatttga tgatgtgccg aatgctcgag ccaacctcaa aaagtgggct gaaacgttaa
     6301 aactgaaagt cgagccggag ccgttggcgg catttatggc aaaaccgaaa ttacagcggt
     6361 tcgagtggcg gaagtggttg cagtttgtaa aagcacagcc ttgtatgtgt tgcggacaac
     6421 aagcagacga cccacatcat attatcggct atggcggagc gatggggagc aaacagcacg
     6481 atttattcac tctgccccta tgccgtattc atcacgatga attgcatcgc aatgtgggta
     6541 aatttgagca agattacggc tcgcaattag agttgttgat taagttttta gaccgagcga
     6601 taggtttggg ggcgttagaa attgatggtt gaattggtgc tgccctatcc gccaagtgta
     6661 aacgactatt ggcggtgggt aagcaaaaca agacgagtgg tgtgtaaacg aggcaaagac
     6721 tatcaatggg caacatttct cgcagcacag aataaaccta aatttggcgg acaggttgaa
     6781 attaagtgcg atgtttactt ccctgataac cgagatcggg atttggataa cttaggcaaa
     6841 tgtattttag attcgttggt atatagcaaa gtgattgttg atgactcccg gcactatgtc
     6901 aaaaagctga catttgagga caagggcaat caaaaaggcg gtgcggtaat tgtaaggatt
     6961 aaggagagac tagatgttaa ttgatattaa aggtatttta cggttttggg gctattccgc
     7021 caacggcaga cttggtacgg aatttccctg tgtggcggca gggatgaaac ctgctgtatc
     7081 ggcaagcaac caccgcatat tacgtttaac tgacgaatcc atttttgaaa ttgaccgctg
     7141 tatcaagcaa cttaaagagc aagagcctca gcaatatgag gtgctgattg gtcggtatgc
     7201 agcaagggta tctgatacac aaatcgaaaa agtattaggt atcagtcact ccacctttaa
     7261 acgagaattg gcacaggcgg aaatgtatgt gctgggtgtg gtagttgggt taaaattggc
     7321 gttggtggtt taaataatgt gatctgtatc acaacattaa ttcaataaat gagataaagt
     7381 atagactctt tttacctatg gagattttac caatgaaaaa gttagtttta gttacagcat
     7441 taagtttagt tttatctgct tgcggtagtg gtggaggtgg tggctcatca gcatcaaatc
     7501 ctaataagga agctactcca cagtccccat ctaaaagtga aactaagtca gatacttcat
     7561 ctcaaaatca agtaaaaggt gctttatcta aagtttcggc agatttacaa gagcaagtaa
     7621 aagcacttaa gcaaattaat gttgatggta gaatcattga gttagcccaa gagcctatcg
     7681 gttttataga aaaagattta gataatggca aaaaaggaaa agcctataac ttagcttatt
     7741 ctagtattgg ttatgtgtta cctaaagatg taaaaacgga tgaatatgga cgagtaattg
     7801 atgagcgagc ttctgctaat gatgtcggta tatttggact agcaaccaaa ttccaagatt
     7861 taccaaaatc cggaactgca cactactctg gcgtatcatt tggtgcaaac agtgaaggta
     7921 aattaacact tactgctgat tttggtgaca agaaagtaaa tggctcaatt actgaaagaa
     7981 agctattatc taataaccaa gcattatctt ctattaactt attatctgcc cctatcagtc
     8041 aaaccaagtt tgctggtgaa gaaatacatt ttgccggcat tgctcaagcc aacgtagaag
     8101 gtaacattgt tcaagctcct tatggcggta aatttatggg gccaaaagcg gaagaagttg
     8161 ttggtttcgt tgccgatgat cataatgacc catatgaagt atttgctggt caaaaataat
     8221 ttttaatgta tgattgacaa ggtcgcccta aaagtatagg atttatgcaa tccttgcgat
     8281 tagtgcaagt gcattacgca atactatttt tatagccctg attggttcag ccagtcgggg
     8341 cttttttgtt gccccgaaaa agtggggtgg agtatgaata caatgcctga aaagaaccct
     8401 gatatatata cgcaggcttg gaattatttt gcaatgtttg tcagcaatca tagcagtttt
     8461 atttgtgctg ttatcattgc tttttttacg tctattacca agtcattttt atacggcaaa
     8521 accgacacac caaagcgggt ctttgcagaa gcgattctgt gtgcggtgat tgccggttcg
     8581 ttgcgtccga ttttaatcta ttttaatgct gatgtttcct taattacccc gattggtgcc
     8641 ggtatcggac tactagggac aagtgctatt cgtcaaatga ttttgaaatt cctcaataag
     8701 aaagcaggag ttgatgataa tgttaattag cgaaagaaaa tttaaacaag tattccccag
     8761 tgcgattgac ggaatttatg ccgaaattgc caaacacatt gaaaaagccg gttgcaagac
     8821 gaaagagcag caagcaatgt ttttggctca atgtggcgta gagtgtgctg gttataaaac
     8881 ctttgaagag aatttgaatt attccgctac ggcattatta gccacatttc cgaaatattt
     8941 tacccaacac aatgttgtgc tttatgcccg agataagcgt gcgattgcta atcgggtgta
     9001 tgcaaatcga atgggtaacg gcaatgaaca aagtggcgat ggttggaaat atcgtgggcg
     9061 tgggctgatc cagattactg gtaaagcgaa ttatattgag tttgcgaagt gggaggggtt
     9121 gccaagcttg gtgaccagtc ctgaccaaat cacagataac cttgctctta cggtgcaggt
     9181 ggcggtatgg tattggcaaa gtcgcaaatt agcaagttac ggtagtgaca ttctaaaagt
     9241 aaccaagctg attaacggcg gcactcacgg gctatcacaa cgcacgaact attatcaacg
     9301 attaatggtg gcataaatga gtaaatatat ttatctcgta gccaccattt tgattttggg
     9361 cttgtgtggt tggatttggc agcagtccaa gcagattaat accttaagag ccgaaaacca
     9421 aacgcaagcc caaaccattg agcagcagca aaaagccaat caacggcttg ctgataagct
     9481 cgaacaagag cgacaagcgg tcgaaaaaat ccgaaaaagt gcaaatgaaa tgcgaaacaa
     9541 agtggagatt gttcaaaatg agattaagtc aatccttgcc caagacagtt gtgctaaagc
     9601 tgatttgcct aatggcgttg ctgatagcat taagcggttg cacaggcaga acaatcacaa
     9661 gcactgaata tttgtatccg ccggcggctt accttgtgcc gtgcgagcgg actgaattta
     9721 gcggcaatac atacggcgat acggttgagt atctgataaa agtgatggga gagcgtgatt
     9781 tgtgtgctaa ccaaatcgac cgtatcagag aatggcaagc acaaaccaaa caaggtttta
     9841 aatagcttgg cggattaagc cgctatgaca tatgggagcg taacagctcc cttttttatt
     9901 gtaccgcatt acttagttat gcttttggtt atatcaagac cataactaag caatgtgttc
     9961 tattaacata aggattattt atgattgtga aattgaaatt aggtgcggta gttgtgctat
    10021 cacaagttaa acaagccacc atcgcatacg ctggatcaga ggcataccaa acagctattg
    10081 agcaagccaa gaaaggttta cttgatgaag acaaaggtaa accatttgaa actgttcttc
    10141 acttccctgc tgtgtatgcc gatgaagatg gacaagaaga aatttgccct gaacagattg
    10201 caactacagt acgttcagat aatgtaagtg gtgagcctgt tgcagtggta ttaatcccag
    10261 atgataacgt agttggcgag ttacagtcta ttttcattta taagacagat tatgcagaaa
    10321 tttttactga caatggtgtg aaattaagtg cagtaagaac aagtccagct cctcgttaat
    10381 tttgtaaaag gtactcccga ggggataccc ctttccacgg ggttgcggca gcgtggtttt
    10441 cggcaatttt ttgagtttct aggcatcatc atcttcctat gatgttgctg ttttttaggc
    10501 ggttttgatt tttaggattt gagcaaatgg acaacttatt tgatctaaaa cttaacatca
    10561 atcagatcgc cgaactcaca ggattgcacc gccagacggt atctcagcga gtcgctgggt
    10621 taaatccagc actcggtagt aatagcaaat taaaactcta tgctctgcgt gatttaatcc
    10681 tcaccgggtt ggcggaaaag atgtcggcag atgtcgatag cctatcacct gctgatcgtc
    10741 gtgcgtggtt ccagtcggaa aacgaaagac taaaatttga aaaagaaatt ggcgagctta
    10801 tcccagcaag cgaagtggct cttgaaatgt cagctttagc aaaaacggta gtacaagcct
    10861 tagaaacctt gcctgatatt ttagagcgag actgcggatt gcagcctaaa gatttgatac
    10921 gagtgcagca agtaactgac gatgtacgag accaaatggc attacatatc caagaagtta
    10981 ccactgacac ggagaatgaa taatgtttgc tagtgctaaa gaaattcgac gtgatatagc
    11041 aaatgccata aaagcacctc ggcgaatgag agtgtcagaa gcagtagcgg aatatatgcg
    11101 tgtaccactt ggcggaggca actcggtcaa atgggataag cacaccgccg cctatatgtt
    11161 agaaccgatg gactgcctca atagccgaga atacgatgcg gtgatttttg tcggcccggc
    11221 acgaacgggt aaaaccatcg gcttgattga cggctggata acctactcaa ttatctgcga
    11281 tccgtctgat ttcctgttgg tgcaacttac ccaagagaaa gctagcgaac atagccgaaa
    11341 acggcttgac cgcacattcc gctgttcgcc cgaaattgcc aagcggctaa gcccacgcaa
    11401 aaacgataac aatgtccacg acaagtattt cagagcgggc aacttgctca aaatcggctg
    11461 gccgtctatc aatgtgcttt cttcatcgga ctacaaatat gttgctctga ctgactacga
    11521 ccgctggccg gaagatgtgg acggagaggg cgacggtttc tcgcttgcct caaagcgtac
    11581 gaccaccttt atgtcagcag gaatgacttt ggtggagagt tcgcccggta aagatattgt
    11641 tgatctcaaa catatcccga aaagcaccca cgaggctcca ccgactaccg gtattttaag
    11701 cctctataat cgaggtgatc gccgtcggtt ttactggcaa tgccccgact gctccgaata
    11761 cttcgagccg tcaatggcaa atatggtcgg ctaccgtgaa gacagtgatt ttgtcaaagc
    11821 cagcgaaaac gcacggttac aatgccctca ctgccaaacc ctgattgccc ccgaactcaa
    11881 acgagagcta aatatcaagg gcgtatggct caaagagggg caaaaaattg atgcaagcgg
    11941 tcaaattagt ggcgaaagtc gcaaatcccg tattgcctcc ttttggcttg aagggccagc
    12001 ggcagcctac caaacgtggg cgcagctcac ctacaaactg ctcaatgccg aacacgaata
    12061 tgaaatgact ggcagtgagg aaaccctcaa agcggtaaca aataccgact gggggttacc
    12121 ttacttacca cgatctgcat tagaacaacg ccgttctgat gagttgatgg aacgccgaga
    12181 agaagtagaa gagaaaactg taccagctca atgtcgcttt attgtggcgg cggtggacgt
    12241 acagggcggt aaaaaccgcc gatttgtggt gcaaatggtc ggttacggtg aaaatggcga
    12301 acgctggttg attgaccgct ataacatctc acatactttg cccgacagtg atggcgtgat
    12361 tgaaaaaatt gaccctcgta ttcccgatga ttggtacata ctgatttcgg acgtactaga
    12421 aaaacgctac ccacttgccc acaatccaaa ccactttatg ccgattttgg cgatggcggt
    12481 ggacagtggc ggtgaagatg gggtaaccga taacgcctac caattttggc gcaaatgccg
    12541 ccgagatggc tatgcgaaac gagtctattt agtcaaaggc gacagcacca aacggcaaaa
    12601 gctgattacc aaaacttacc ccgacaatac cgcacgaagt gaccgccact cctccgcacg
    12661 gggcgatgtg ccgttgtact tgctccaaac cgactacctc aaagatcgga ttaacaacgc
    12721 cctgttccgt gatacggtgg gggcgaacta catccacttc cccgactggc taggtgaatg
    12781 gttttttaac gaattgacct acgaagaacg aggagcggac ggcaaatggc ggaaaccggg
    12841 caaaggcaat aacgaagcct tcgacctgtt ctgctatgcc cacgccattg caattttacg
    12901 aggctacgaa cgaatcaaat ggggcgatga aaacgatgtg ccaagctggg caaaactgcc
    12961 cgacatcaac cctaatatca ttcgggaaac gccaagaacg gctgaacaag cggtcgaaat
    13021 tgaagaaaaa tccgaaaaac cacaacctaa acccaccaaa gcaaaaagca gttggttaag
    13081 tggtggcggt agaaaaacag gaggctggct atgagccttt acaccataga cgagcttaaa
    13141 caaaaaatcc gcacgcttga tgaaaaaatc gaaaccgccc aaagccaagt gagctttaat
    13201 ggtcggtcgg tttcatatca agtggcggaa ctaaccaaac agcgtgatcg ctatcaaaca
    13261 atgctggatg aacaacttgc ccaaagcggg caacgcacca aacagcatcg aattaaatat
    13321 gcgaggttta tttgatgaac ttcctcgaaa aaaccattgc caccctttcc ccgaaatggg
    13381 cggcaaatcg ctctcgaaat cgctatgtgc taaatgccta tgaggcggca cagcctagcc
    13441 gaacccataa ggcaagccga gagagcaaag gggcaaactc tactgttcgc caaagtgcgg
    13501 tcagcctacg ggaacaagcc cgagccttag accaaaatca cgatattgtg atcggcattc
    13561 tcgacaaaat ggaagagcgg gtgattggct caaaaggcat tcatattgaa ccgcagccgc
    13621 tgacgttggc aggtgaagtc cacgaagaat tagctgggca aatccgaaag ctgtgggcgg
    13681 aatggtcggt gaaacctgat gtgacgggat tatacactcg cccattgcta gaacgaatgc
    13741 tacttcggac ttggctacga gacggcgaag tctttgttca gttggtgaaa ggcaaggtgg
    13801 cagggttaga acacggctca caggttgctt tttcccttga agccttagag ccggattttg
    13861 tgccaatgca atccgatgag gcaaaaaacg gcttggtgca aggcgtgttt ctcaatgcgt
    13921 ggcggaagcc gactgcttac caagtctatt tagacaatcc gcaagaaagc aacggaatgt
    13981 acggcaaagt gaaaaccgtg ccggcagaca atatgttgca cctcgccttt cgcaagcggt
    14041 tacatcaaat tcgtggtgta agtatgttgc acggtgtgat tgtgcgattg gcggatctga
    14101 aagaatacga agagagcgaa cgagttgccg ctcgcattgc cgccgcaatg acgatgtaca
    14161 ttaaaaaagg cgatgcggca ctgtatgatg acgacagtaa cagcgatggc gaacgcctgt
    14221 ttgatattgc ccccggtgcg gtgattgatg atttaaaacc gggtgaagac atcggcttaa
    14281 tcaattccaa ccgcccgaat gtgaatttgg aaactttccg caatggacaa ctgcgagcca
    14341 ctgccgccgg tactcgttcg agctattcca gcatcgcccg agactacaac ggcacttact
    14401 ctgcacagcg acaagagctg gttgaaagtt ttgaaggtta tgcggtgcta caagatgcgt
    14461 ttgtggcggc aatcagccgc ccgatttatc gggaatggct caaaatggca atcgcctcac
    14521 aagcgatcaa actgccgcct gatattgacc aaaactctct ctttaatgcg gtttattcag
    14581 gtcctgtaat gccgtggatt gacccaatca aagaggcgaa tgcgtggaaa gaacgaatta
    14641 aaggcggttt agccaccgaa gggcaagcaa tccgagccag tggcaataac ccagccgaag
    14701 tcaaacggca acgaattgtc gagatcaaag aaaatcaagc cgaagggcta aaatttgata
    14761 ccgatctcac caattacggt gggcaggata aatctttctc caatcaaaaa gatgaaatta
    14821 acgaagatga ataacaggag ggtgcgtgaa aacgtggttc aacattcaag ccaaagcgaa
    14881 tgacaccgcc gaaatctcaa tttttgacga aatcggcttt tggggtgtca ccgcccaaca
    14941 atttgctaaa gacttaaaag cccttggcaa caatttaaaa caaatcaatc tgcatatcca
    15001 ctcgcccggt ggtgatgtgt ttgacggcat tgccatttac aacctgctaa aaaatcaccc
    15061 tgctaacaag accgtctata ttgacggtct tgccgcatca atggctagcg taattgcaat
    15121 ggcaggtgat gaaatcatta tgcctgaaaa cgctatgatg atgatccaca aaccgtgggg
    15181 cattcaaggc ggtgatgcgg atgatatgcg taaatatgcg gatttactgg ataaggttga
    15241 aagtacactg attatggcgt atgtcgccaa aacaggtaaa tacgaaaccg atttggcaga
    15301 aatgctgaaa gaagaaactt ggctcacagg caaagagtgc gtggagcaag gtttcgccga
    15361 taagttagcc gaaccccttg tggcgatggc ttgtatccaa tccaaaaaat tagaggacta
    15421 cacaaaaatg cctgacaaaa tcaaaaatat gctattcgca ccacaaggca acgcaggtgc
    15481 aaatccaaaa catgaacaac ctcaaacacc accacaagcg ggtgaaaatc cgcaaaatgt
    15541 ggcaaaacct gatgcaatgg tggcattagc ccaacgcaat gcaacgatta aagcgacctt
    15601 tgccgctttc ggcacacaat ttgacggctt gctggcagaa tgtttagctg atgtgtcaat
    15661 gaccgctgag caagccaaag acaagctcct tgccaaactg ggcgaaaaca ccaccccaag
    15721 cgtaccgcaa aaccacattc acgcaggtaa cggtaacatc gttggcgaca gcgtgaagca
    15781 gtcgttaatg gctcgtgctg gtcaagatac cgacaaaacc aacgcaagag ataatgccta
    15841 caatgcaatg accttgcgtg agttggctcg tgcctcattg gttgatcgtg gcgtgggtat
    15901 tgcgggctac accccaatgc agatggtcgg tcttgccttt actcattcga gctccgactt
    15961 cggtcaaatc ttgattgatg tggctcataa atccctactc aaaggctggg aaaccgctac
    16021 cgaaaactac gagcagttta ccacccgtgg cactcttact gacttccgac cggcaaaacg
    16081 agtcggttta ggtgagtttg gctacctgcc ggaagtgggc gaaggtgaag aatacaccta
    16141 cggcacaatc ggtgatgaag gtgcatctgt tgcattggcg acttacggac aactgtttag
    16201 cattacccgt caggcgatta tcaatgacga tatgcatctt ttaactaaaa tccctgagaa
    16261 aatgggtgca gcagccaaag cgactattac caaactggtg tttgccttga ttaccggcaa
    16321 tgcgacagcc caagacggta aaaagctgtt tgatgctaca cataaaaaca gcttaacggg
    16381 tgcggcattg aatgtggaaa acattgacaa ggcaatccag ttaatgaatg gctttgtaaa
    16441 cagccgtggt gaaccgctct ctattgagcc agaatttatg ctgttaccaa cctcattgca
    16501 taccaaagca aaacagattc ttggttcgtc aagcgtggaa ggtgcagaca tcaacagcgg
    16561 tatcattaac ccgatccgtg atattgtcag cccgattaaa tcgcctcgct tacaaattgc
    16621 agatccgaaa tcatggtact tgctcaataa agaggcgatt gaagtctctt atctggacgg
    16681 ggtggatagc ccttacatcg agcaacagca cggctttacg gtggacggtg tttcgaccaa
    16741 agtccgtatc gatgctggtg tgaatgtgat tgactaccgt ggtgtggtga aagtgaccaa
    16801 cgcttaattt aaacaattta aaacctgacc gcacttttaa cagtgcggtt ttttattatc
    16861 cgaaaaaagg aaaaagagat atggctaaaa actatattca agacggcaat accgtgcgtt
    16921 taactgcaac caaagcgatt acttccggcg atgtcattgt ggcggaggat ttaattgcga
    16981 ttgcggtttc tgatgcggca aaaaatgatg cagtagttgg cttaactacc ggtgttttta
    17041 gcgtaaaagc taaacaagca gatgacatca aacaaggtgc agtgttgtac tggtctgaaa
    17101 cagagggcgc aactctcacc gcaggctcaa ataaacgact tggcattgcg tggaaagact
    17161 ctggcacatc atctaatcaa gttgatgtga aaatcaatgt ctagcccgtt tgagcaggca
    17221 atagctgccg ccgatcaaac tattcagcaa actatgatga gtgagtggtt gattggcggc
    17281 aagccttacc ctgcaacttt tgatgaagcc cccgctattt ttaacggttt acactcaacc
    17341 gatgacagag ctattcacgg cacggaacgc acactgaccc tatttcgggc gagtggctac
    17401 aaaccgagat tggacgaccg agtgagcgga aatggcaaga aataccttgt taaatcctat
    17461 cactttgtcg atcagttaat cgtattgcaa ttggagtaaa caatgggttc tcaagtgacc
    17521 ggtttaaaag aactgcaagc ctccctgaaa aaaatagcta ggcaaaccgt acctaaagca
    17581 gccgctcaag caatccgtac tgttgggcgg caagcaatga ataaggcggt taaatcggtg
    17641 gcggcagaga ttggcgtaaa tcaaaagaca atcaaaggta gagcaaaaat gacggcaaag
    17701 cccacgccgt caagattgca agccacgatt aaggttaatc gatcacatat gccgatgatt
    17761 cgggtactag agcgcaagtc caaccgcctg tcacccacca aaggcagtat tagagttggg
    17821 aaacacactg tacaacgtgg ttttcgccaa cgactcgcca atgggcgaac gcacattatg
    17881 taccggcaag gtcgtaagcg ttacggcatt gatgtagcaa aagtgccgtt atcccaacca
    17941 cttacacaag catttgatcg agaattgaaa aactatcccg aacaagtgca agcggaatta
    18001 gctaaacaaa ttgcggggaa attatgaaaa tccacacaaa aatccgaaaa gaagtccttg
    18061 aattattaca gactaaattg ccggaaattg ataattttta taacgggctg ccaactttta
    18121 ttgatattga ggaggaacaa cttgcagtat cggtttatct cgatgatatc agtctgcaag
    18181 aaataactgt ttgtaataat caatgggacg ccaagctcaa tattacaatc catctgaaat
    18241 ctaccgagag tgcagaagat gaattagacg aatgggcgga aaaaattcgt gaaattatcg
    18301 atgattatcc cgaatttgag catttagagt cagtcgcgct ctctcagtat caatatgagc
    18361 aagaccagaa tcagcgtacg tggcacatgg cgacattaat ctttgatgtt gagtattaaa
    18421 caaataatct ctataggaga cttaaaatgg caaaaacaac aaaagtccaa ggcacgaaat
    18481 ttagaattag cgttggacgt gaggctcaaa aagcaattac cgcaattaac ttaaatactg
    18541 ctactctaac gattgcatcc tcaggctata aaaaaggtga tgcaatcgag cttacaggtt
    18601 gtggtcaatt agatggtatc tacccggtgt tatcagtaac taccgatcag gtaaaattat
    18661 gcgaagaagt gaactggaca ggtaaagatt taccagctaa ttacaccaaa gccaaggcgg
    18721 cactagtgca atactcggag caattctgcg cggtaaaaaa cattgaaaaa tctgatgata
    18781 ctttgagtac cgaagatgta acaacggttt gttcagaggg cacagaaacc gagccgggtg
    18841 aaattgaatt tggttcgatc aaactcagtt tcttccacaa gcctactacc gaaatgcaaa
    18901 cccgattgcg caaactcttt tacgacaaat ccacctttgc ctacaaactg gaactaccgg
    18961 ataaccatgg cacgacctat ggcgaaggct ttattgaggc cggcaacggt ttctcgggcg
    19021 aagttaaggg taagtatgaa ggctctgtat ctattaagcc aagcaaacgc gactacttat
    19081 tagtttaatt gcaaaaaaac cataaaattc gaccgtttgt agaaataaca agcggtcttt
    19141 ttatatcaga attttacaaa aggaacgaac aatgacactg cgtgagaaac tccttgctaa
    19201 taaaccaaaa ttgcaaccta tcgaaatcaa cggcgagacc tactacctgc gtgaagctac
    19261 tgttggtgat atgaacaagc agatttttga aacccgaagc tggctcattc aacaagctga
    19321 acaagaaaat gttgaattac cggcagaaga tgatgaaacc tttgatgagg ctctcaaccg
    19381 ttttggcgaa aaataccgcc ttgctcaatc ggttgcctac cgcttatgtg atgaaaacgg
    19441 tgtattactg tttaatcctc tcgacattaa cgatctgaat gccattgccg aattagacag
    19501 taaagtgatt atcgacttta accaagccgt gtccgcccca aaagactcag cgagcgaaga
    19561 aagttccaaa taaccctttc gctcgcactg ggtaaaacac ttgaagaaat cgaacaaatg
    19621 cccgaacgcc actttgccga atatcggctt ttctaccaag aacagccttt cggcttatgg
    19681 cgagacgatt accgcaccgc ccaacttgcc cacttaaccg caatgttcaa ccgtgatccg
    19741 aaaggcaaag ctccaaaatt agcggagttt atgccgtttt ttaatcggac agatgaggtg
    19801 gaggaaatag aagatgatgg tgtggcagat tatttggcga aaaggtaaag aaaacagctt
    19861 gaaattcctt gctcttggat atatatttcc tcaaagagaa ggagggaagt atgtttgaag
    19921 cactagaccg ttttatgatt aatacgatta aaattgcaat tattgtattt ttggtcgctt
    19981 gcatctttat tagtatgccg aactggtgga tagcttctat cttagtactt ttcccgactg
    20041 cctatttgct tgataaatac tggtggcgaa ataccgaaat gtatcgccgc aaaatggata
    20101 aattagttga agagatgaaa aataatcgtc aaatctaaat taacatcaat tctagcccgc
    20161 tttatgcggg ctttttattt ggggtgaaaa agtgagtagc tcaaacagat taactattac
    20221 cttagatgta gaaaattcta agttactagc tggattcgca caatctgata cagtagcaaa
    20281 taagtttgct cgcagcttca ttgtgaatat ggatcaggct cagcaaaaag cacgtcaatt
    20341 tgctgataga tcgacaaaat atctaaaaaa tattgaacaa gcagcaaata atcttaatag
    20401 ctctgtatca aaagaacgtt tttggcaaat tgcaaatcgg ttgcaattcc cgacaagtaa
    20461 agtgattagt tatgccaata gctacaccga actcggtaat aaactcaaat tagtcaccga
    20521 aagtgaatcc caacacgccc gagcaatggc ggcggtgtat gatatttcgc tcaaaaccgc
    20581 ccaatctaca caggcaacct cttcggttta tcagaccttt gctcaaaatg caaaacagct
    20641 cggtatttct caaaacgatg tggcaaaact aacggaaacg gtggcgaaat cagtggcgat
    20701 ctctggtgca agttcggcaa ccgcttcaaa cgccctagtg caattcagcc aatcgttgtt
    20761 aatgggtaag ctcaaagccc aagaatttaa ctcattgatg acccaaacac cgtctgttat
    20821 tcaggcgatt gccaaagggt taggaattac tactgccgaa cttaaagcaa tggtggataa
    20881 cggtgagatg tcggctgaaa aaatgattga ggggctaaaa aaagcagaga gttatgtaaa
    20941 cggacagtac gccaaaacaa ccactacaat tagtggagca atgcaaaatc tttcaactgc
    21001 ggctgaaaag tgggttggcg aaatggatag taccgttggt gtgtcacaga aagccgttgc
    21061 cgttctgaat gcgttaaatg ctaattttga cacggttgct aaaacggtac ttgtcgccgg
    21121 tggagccttt gctcttttta aaggctatat gaatgtacgc ccatttatcg agtcaagagc
    21181 ggctatttat gaaaatcaaa aagcaattat tgctgaaaat caagcccgcc aacaggcaat
    21241 ggcgattcgt cagcaagagt tagtaggact gtctcaacaa accgctttaa aactggaaca
    21301 aacattacaa acctacaatc aaaataaagc cgaattagag gcaattgcag ttaaacagca
    21361 gaaaattaca aaagaacggg aagaaatcgc agtggcaatt caagcggctg caactcgttc
    21421 ggaaagatta gcgttatccg ccgaattaca agccttagat caaaaggaaa tcacgctcgg
    21481 acaacagaaa atagcggttg aacgccagca aattgcagca aagcaggctc tcaaagtggc
    21541 gtatgctgaa aatgcggttg ctcaaagtgc aatgagtgca ggtatgatca cagcaaccac
    21601 aacaaccaga gcaatgaatg gtgttttagc ggctgcaaga gctgaattga atttactgaa
    21661 agcagcagca ctgtctaacc cattaatgac actcgcaatg gtggctacaa ctgccggtac
    21721 tgccctttgg ggattttttg aaagtcaaaa agcagctcgt gaagaagccc tccgctacgc
    21781 tgacagctta gactctgttc gagtcaatat cgaaaaaatg actaaggctc aaactgatgc
    21841 agaaatggtt aaattgtctc gttcgatcaa agaacaggaa acagcattag ctaatctgaa
    21901 acaacgccaa gctgaactta cacgagaaat agagcaagga gctacggttt atgaggatgc
    21961 gtttgccggc actgtgcgtg ttacgatgag tgcggaagag cttgcgaaaa aacaagaaga
    22021 attaacatta gttactgctg atgctgaaaa agctcaaaaa accttgaatt ctagcttaga
    22081 ggctcaagaa gccttaaaag ctcatattcc gattgctaac ctacgagagg aatttgttaa
    22141 attatatcct cacattgatg aaagccaaat caaagttgat ggcttaaata ttgctatcgg
    22201 taattttacc gtcaaatcac cggagatggt tattgctact aataacattg ctaatgctct
    22261 tggtggcgtt gccggagagg ctatgagagc ggctattcta gtcgctaatc tgtcaagtat
    22321 gaagctggat gctaacggtg ctgcaattat cgatcctaaa catcttgaaa aaatcgagca
    22381 aattgaacgt aacaatgcga ttggttcggc taaaggtaaa gataaaatcg cattgcaagt
    22441 aaaagacgct ctgattaaat caggtatgaa agagggcgat gccggatacg agcgactaaa
    22501 agcagcatat gagcaacaat ttacgttgca aaatgcccct aagggcaagg gtggaaaaac
    22561 caaagccgaa aaagaggcag aaaaagcggc taaaaagcaa caaagttatc aaaaccaagt
    22621 ggcggagatg acaaatcgtt tggcaggctt aaaagccaat gcttcagata tcgcgatttt
    22681 cgggcaagtc tccgactacc aagaagtgcg taaactgact gaagatattg cgatcaatgc
    22741 cgaaaaatac aaaggctacg gtgagcaagg tgtcgcaagg cttaaagagt tagccagtca
    22801 gttagagtcc gcccagcaac aagtcgctat ttctcaattt gcctacaatg gcggtgagaa
    22861 actcaaagca atggagtttg aattaacctt gctcggtaaa acccgccaag agcaagagtt
    22921 aatgcagtac aaccacgaat tagatcttga agcagctcgg ctcaaaatcg gtatggctga
    22981 tgaaaatatt gcgaagttag accaggaaat cgttaagcta aaagaacgtc gagcggaaat
    23041 ccaagcacaa gcagaacaag ctcgtggcag ctttaaacaa ggtatgttag atggtttgaa
    23101 taatatcgaa gctgatgtca gcaatgtagc ggcaaatgtt gccaatatta ctcaaaatac
    23161 ctttgacggt atggcggata gcttgactaa ttttgtgatg acaggtaaag cggatttccg
    23221 tagttttgct aattccatat tatctgatct tagcaaaatg attatcaaaa tgatgttatt
    23281 taatgctatc aaacaaggtg caactatgtt gtttggctac caaggaccga ctacaacggt
    23341 aaatggtaat gctgtttatg ggttaggtac ttgggcaaca ggtggctaca ccggcgatgg
    23401 tggtaaatac accccagcgg gtatcgtcca caaaggggaa tacgtcatca ccaaagaggc
    23461 aaccgctcgt cttggtttgg attacctaaa ctatcttaac tatggcaaac gagggttttc
    23521 cagcggtggt ggcgttgctg tgccgagagt gccatcctca tcttatcaac ctaaatcagc
    23581 tcaaagtaat atcagtgttc aggtgattaa taacggagag ccggttgatg caaaagtcag
    23641 ccagaaacag caaggcgatc aaatgcaaat taccgttgag ttaatgcgtg aaattgcccg
    23701 acaggaggca aacggtatga tccaaaacaa cttcagagct ggaggagtat ttgcctaatg
    23761 gaaacattaa aatggtgtgt tcgcaccgat ttagcggttg aaaatacccc tgaaataatg
    23821 gaagtcaaat tcggcgatgg ttatacccaa cgctcgccca aaggcttaaa caatttatta
    23881 cgagcctata caggcacaat caaagtgaaa aagggggaac atttagcggt ggaggcattt
    23941 tttgccaaac atcgtggtgt ttcccctttt tactttaaag atccgtacac acaacaaaac
    24001 aaaaaggtag tgtgtagcag ttggcccgca aaaatggttg gcttaaacca ttgggaattt
    24061 agtgtaacct ttaaggaagt accctaatgc ctgttagcat atccaatcaa atgaaactcg
    24121 accttgccaa acttgagcaa aatgcaatgc ttgatttgta cgaggtggac ttacgcacat
    24181 taaaggataa aagcggtaat gctggttc
//
LOCUS       DANLZD010000021        23970 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.021, whole genome shotgun sequence.
ACCESSION   DANLZD010000021 DANLZD010000000
VERSION     DANLZD010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 23970)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23970)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23970
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.021"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(345..992)
                     /gene="rnt"
                     /locus_tag="PXE26_000621"
     CDS             complement(345..992)
                     /gene="rnt"
                     /locus_tag="PXE26_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010130043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HDL5593232.1"
                     /translation="MEQTTEQIDYKLLKHRFRGYLPVVIDVETAGLNAQTDALLELAA
                     ITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNGIDIDNPLRGAVAENIAIPEM
                     FKMVRKAMKEQGCQRAVIVAHNAAFDQGFLQAAIKRINAKRDPFHPFAMFDTATLAGF
                     MYGQTVLVKACQVAKIPFDGKQAHSALYDTERTAELFCAMVNRLKDLGGFPPLSD"
     gene            complement(1077..1484)
                     /gene="gloA"
                     /locus_tag="PXE26_000622"
     CDS             complement(1077..1484)
                     /gene="gloA"
                     /locus_tag="PXE26_000622"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HDL5593233.1"
                     /translation="MRILHTMLRVGDLERSIKFYTDVLGMRLLRRSENEQYKYSLAFL
                     GYADESESAVIELTYNWGVDKYELGTAYGHIALGVDDIYKTIEDVRAAGGKITREPGP
                     VLGGTTVIAFAEDPDGYKIEFIENKDAKAALGN"
     gene            1574..2389
                     /locus_tag="PXE26_000623"
     CDS             1574..2389
                     /locus_tag="PXE26_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593234.1"
                     /translation="MAHDHDSPSKLEISTHAALPMVLMLFIEMALNFYSAPKNSIFIS
                     PYLLAFFVTSLISFLVLWKGEICRGQASRLSFILPFLLIFAVGNFLYSIGFTPKHNPM
                     AVASIAAVFACLIYFRLPEDQTLYNTLMYCGLAISSIGIIQYLAIYWFELPSLFNGIR
                     ANNFAQVLLGILLAGWYLMLAKSRLDVFLKLLVKTALVVLILNYCWTAFVLYQHLQIM
                     PDMPLLSFIIYFAAQFVILLMLAWLLLGKNIKNPTAWTVATLLAILYPFANVV"
     gene            2393..3139
                     /locus_tag="PXE26_000624"
     CDS             2393..3139
                     /locus_tag="PXE26_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593235.1"
                     /translation="MKRALKFFGIATVLSVVAIYYFLMPSHYLATPINWILPKAWKVQ
                     LPQGLNLNWQGSSLAQFQLSYRDCPLLSADKTDLGWIEKNHLSVDKLDIDYRCLALFP
                     QNEHSNSDTSLNALLAVIPDGEATIHALNWKNLPTDFNPRLQRLFEQTAIKLSLSKGE
                     IQATAAQQAVKFAANFANGRLNADLSYQPNEKEQHNLRISAEIEDNFTQLPPTISAEY
                     DWQLSYEIIANKALQKGALFSVGKKMPHKS"
     gene            3325..5100
                     /locus_tag="PXE26_000625"
     CDS             3325..5100
                     /locus_tag="PXE26_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbH domain-containing protein"
                     /protein_id="HDL5593236.1"
                     /translation="MPLKTAIRISLLSQNSWGKGNIVISNSDGEITEKGLNLPLRLTG
                     NIKHGNFILYSSVPLDFQGNFDDLSVKFLPSSLLRLTGKERYLTIEDLRFPLAGIKID
                     KHGIHGRLHAILRGQSPDFNNIEFHLDGQAQNFKAGALDFFQDPKDANAVKDSWKWRI
                     WGASILKAFNSKVNLSGRGQWHKQLVRLEELKGDLATVKLADTTISKITLNNTQAIRF
                     NVKKFTLDGAVMLQSPEIAFSYGGVLPKPRVNLAFDGEVEKLRFKGAVNTTELGPLKL
                     FARRQLSQDASQIIGKLYWPEQSAQGFQPLFPFRSQWVINNGTIRGETAFSAGSKNGL
                     IAGGHLAIRNGGLSLPNGEAKGIEFSLPYRYQNGRFHFGAKKPLDVKIAQIKLGDLAL
                     DNASMKLNGYYPYTKAKPLNLNQLSFDLFGGKLNVKRFALPQTELAYLNLERIDFEQI
                     LQFMQYQQIDLKGKANAILPFWLSGKPCYICDGLLTQAETSYLTFTPELLSEMQKSGY
                     TEQILLHLVDKSTINDFRSLINVGPKGDLVLDGKLKLSSNQNKSKVNLNYNHRENLFD
                     LWHLINYGSQFEQKLENYLYQKLER"
     gene            5118..5312
                     /locus_tag="PXE26_000626"
     CDS             5118..5312
                     /locus_tag="PXE26_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnbE family lipoprotein"
                     /protein_id="HDL5593237.1"
                     /translation="MKPATFYFAIFLLNLTACTPKVQLETPSEGITINMNVVVDHRID
                     VKMDEKSRAVITKSENKTKN"
     gene            complement(5309..5782)
                     /gene="folK"
                     /locus_tag="PXE26_000627"
     CDS             complement(5309..5782)
                     /gene="folK"
                     /locus_tag="PXE26_000627"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HDL5593238.1"
                     /translation="MQTVYIALGSNLENPLEQLKQAVEKLKKFANEFEISPFYGSKPV
                     GPQDQPDYVNAVAKFSTDLSPTALLDKLQSIENEQGRVRVRRWGERTLDLDIILYGNQ
                     QIQTERLNVPHIEMKNREFVIVPMFDLTPDLVLPTGEKLADIYAQFKDHQMIIFS"
     gene            complement(5985..7316)
                     /gene="pcnB"
                     /locus_tag="PXE26_000628"
     CDS             complement(5985..7316)
                     /gene="pcnB"
                     /locus_tag="PXE26_000628"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HDL5593239.1"
                     /translation="MLHKKFAVNASQYRISPKDFPKNAISIVDKLQIAGYEAYIVGGC
                     IRDLLLEKKPKDFDIATNARPEEIQRIFGRQCRLIGRRFRLAHIVYGREIFEVATFRA
                     GHESHRNDKISKVSDEGMLLRDNVYGTLREDAERRDFTVNALYYDIKRNLIFDFFNGI
                     EDLRAGKLSLIGEPTIRYQEDPVRMLRAVRFMAKLDMFLDKATASPIRDMAVLLTNIP
                     AARLFDESLKLLQTGAGLKTYQLLREYELWQFLFPVLPAFFTAKGDSYAERMITKALN
                     STDERIADKLPVNPAFLFAALLWYPLREKMEQLKNEGGFNSYDAMMLAANDVLAESCN
                     AIALHRRHTSVIRDIWALQFQMMKRSGNRPQQTLEHVKFRAGFDLLVMRAEIEGGDLV
                     ELSAWWHEYQFSNEGQRTELLKSVRHLGNVPSEKKKTRRRRTFKKKPKVNG"
     gene            complement(7561..8007)
                     /gene="dksA"
                     /locus_tag="PXE26_000629"
     CDS             complement(7561..8007)
                     /gene="dksA"
                     /locus_tag="PXE26_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HDL5593240.1"
                     /translation="MTQAAKTSLGLLALAGVEPYELKKDEEYMNEAQREHFTKILKAW
                     HSQIMEEAERTKSQLQEDMTNFADPNDRASQEEEFSLELRNRDRERKLLKKIEQTLYK
                     IQEDEYGYCETCGVEIGIKRLEARPTADLCIDCKTLAEIREKQLGL"
     gene            complement(8257..9210)
                     /gene="thiB"
                     /locus_tag="PXE26_000630"
     CDS             complement(8257..9210)
                     /gene="thiB"
                     /locus_tag="PXE26_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate binding
                     subunit"
                     /protein_id="HDL5593241.1"
                     /translation="MKFILSSLALLSASVYANQPTLTVYTYSSFASEYGPAPKLEQNF
                     EKECGCDVKFVPLDDSVTMFNRLRLEGAKTKADVVVGIDNFLQPEAEKSGLFAEFEAK
                     TKLETQQKIFFPYDTGSYAFIYDKEKLKNPPKSLKELVERQDLKVIYQDPRTSSVGRG
                     FLMWVNQVYGDEAPTAWKTLAKHTVTVGKGWSETYGAFLKGESDLVLSYTTSPLYHKW
                     HENTDKYVAAPFEEGHLVQVENAAIVKSSQQKALANQFLEFLHKPESQHIISYHNVMN
                     PVLTDGVDPAFAAMPTYKTIEFTPPTTETIQKWLADWSKSW"
     regulatory      complement(9254..9397)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            9681..10667
                     /locus_tag="PXE26_000631"
     CDS             9681..10667
                     /locus_tag="PXE26_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HDL5593242.1"
                     /translation="MSQLIRTLKGHIRDEIIKKGGWVNAHAHADRAFTMTPEKITVYQ
                     NANLQQKWDLVDEVKRNSSVEDYYRRFSQAIELMISQGVTAFGTFVDIDQVCEDRAII
                     AAHKAREVYKNDIILKFANQTLKGVIEPNAKKWFDIGSEMVDMIGGLPYRDELDYGKG
                     LEAMDILMDKAKSLGKMLHVHVDQFNSPKEKETEQLCDKSIEHGMQGRVVAIHGISIG
                     SHPKEYRKMLYQKMRDSQMMVIACPMAWIDSGRKEDLQPFHNALTPADELIPEGITVA
                     IGTDNICDYMVPLCEGDMWQELSLLSAGCRFTNLEEMANIASINGRKVLGLV"
     gene            complement(10721..11140)
                     /locus_tag="PXE26_000632"
     CDS             complement(10721..11140)
                     /locus_tag="PXE26_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF937 domain-containing protein"
                     /protein_id="HDL5593243.1"
                     /translation="MLGNILGSLASSVLSGNNQSTATQLIQNLLASQGGIEGLIAKFQ
                     QGGLDDVLRTWISSDEDNAPVSGEQISNVFGQENIQNVAQEAGVDAADASDLLAQFLP
                     KIVDTLTPNGNVEDLKNFDANDLLAQAAKGILGNLFK"
     gene            complement(11218..11973)
                     /gene="kdsB"
                     /locus_tag="PXE26_000633"
     CDS             complement(11218..11973)
                     /gene="kdsB"
                     /locus_tag="PXE26_000633"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HDL5593244.1"
                     /translation="MKFTVIIPARYASSRLPRKPLLDIAGKPMIQHVWEKAQLAGASR
                     VIIATDHPEIEALAQSFGAEVCMTSEKHNSGTERLAEVIEKMQIADSEIIVNIQGDEP
                     LIPPVIVTQVAQNLDAYQVNMATLGVKLATREELFNPNAVKVVADKNGMALYFSRASI
                     PFARDSFPDCDDSFVAAQGYLRHIGIYAYRAGFVKQYVAWQPTQLEQLESLEQLRALW
                     HGEKIHIEPAKEAPQVGVDTPEDLERVRAILAR"
     gene            complement(11983..12936)
                     /gene="trxB"
                     /locus_tag="PXE26_000634"
     CDS             complement(11983..12936)
                     /gene="trxB"
                     /locus_tag="PXE26_000634"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HDL5593245.1"
                     /translation="MTTKHTKLLILGSGPAGYTAAVYAARANLNPVLVTGMQQGGQLT
                     TTDEIENWPGEFEQITGTELMNKMLKHAEKFETEIVFDHIHSVDLSKRPFTLNGDLYT
                     FTCDALIIATGASAKYLGLPSEEHFKGKGVSACATCDGFFYRNKPVAVVGGGNTAVEE
                     ALYLANLASEVHLIHRRDSFRAEKILLGRLQKRIEEGKIILHTDRTVDEVLGDNMGVT
                     GLRLKSTKEELSEEIKVDGFFVAIGHAPNTAMFEGQLELENGYIKVKSGLEGNATATS
                     VEGVFAAGDVMDHNYRQAITSAGTGCMAALDAERFLDAQEA"
     gene            13103..14173
                     /gene="dhaK"
                     /locus_tag="PXE26_000635"
     CDS             13103..14173
                     /gene="dhaK"
                     /locus_tag="PXE26_000635"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HDL5593246.1"
                     /translation="MKKLINSIETVLDEQLSGFVKAHSDLTLNTEPVYIYRTTPSNQP
                     KVALISGGGSGHEPMHAGFIGKGMLDGACPGAIFTSPTPDQMFECGLAVDRGEGVLLI
                     IKNYTGDVLNFETATELLADSGVKVATVLVDDDVAVKDSLYTAGRRGVANTVLIEKLL
                     GAAADKGYNLSELAKLGHQLNNNGHSIGIALSACTVPAAGKPSFTLAENEMEFGVGIH
                     GEPGIERRPFENLDSTVKQMFETLIAHGDYQRKIRHWNTQTQQWDEIEESKVALKKGD
                     RVIALVNNLGAVPLSELYAVYDALEKECQTFGLSIERSLVGSYCTSLDMQGISITLLK
                     VDEDILKLWDAPVNTPAMRWGE"
     gene            14194..14820
                     /gene="dhaL"
                     /locus_tag="PXE26_000636"
     CDS             14194..14820
                     /gene="dhaL"
                     /locus_tag="PXE26_000636"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase ADP-binding subunit
                     DhaL"
                     /protein_id="HDL5593247.1"
                     /translation="MTISKQQILKWLENCQQVMTEKRDYLTELDTVIGDGDHGLNMQR
                     GFSKALEKAHTVQDKDIGTLLKTVGMTLLSQVGGASGPLYGSFFIKAAQGATGKEQLS
                     FNELLALLQQGAEAIVQRGHAQVGDKTMCDLWLPLLEDLAQADSTQPIAQILLQAVEK
                     AENFANQTAPLMAKKGRASYLGERSIGHKDPGATSSYYIFKALAEALQ"
     gene            14830..15237
                     /gene="dhaM"
                     /locus_tag="PXE26_000637"
     CDS             14830..15237
                     /gene="dhaM"
                     /locus_tag="PXE26_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HDL5593248.1"
                     /translation="MVNLVIVSHSAKLAEGVGEILAQMAQGGCKIALAGGIEDTSNPI
                     GTDAVKIMQAIESVFSPDGVIVFVDLGSAILSTQTAIDLLEPELAEKVIISYAPLVEG
                     AFAAVVAASAGDSLEAVLNEANEAAALKQEQAN"
     gene            complement(15277..16122)
                     /locus_tag="PXE26_000638"
     CDS             complement(15277..16122)
                     /locus_tag="PXE26_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone YbbN"
                     /protein_id="HDL5593249.1"
                     /translation="MDYFVNVNEQNFSEVWAAAAQVPTVFHFISPREVASLEMDALLR
                     RISDENPNQFLLATVNCDEQQALAAQFRIQQIPTLYLFAGGQPIDAIQGAVSEQELRI
                     RLANILPKEEELKFQQALELLQDQRYTEALPLLKSAWEMTDKKNSDFALLYAETYIAM
                     KSVEEAREILKAIPIQDRDSRWHGLQAQIELLEQASESPELQQLQADYANSKTPEIAI
                     KLANQLHQAHKNEEALTLLFDWLKSDLNVANGEVKSQFLAILSALGTDPIVPKFRRQL
                     YSLLY"
     gene            complement(16166..16492)
                     /gene="glpE"
                     /locus_tag="PXE26_000639"
     CDS             complement(16166..16492)
                     /gene="glpE"
                     /locus_tag="PXE26_000639"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase GlpE"
                     /protein_id="HDL5593250.1"
                     /translation="METTFKEISPQQAWELIENEGAVLADVRDARRYVYSHPQDAFHL
                     TNQSYGKFLDEVDYDEPVVVICYHGVSSQSTAQFLIEQGFENVYSVKGGFEAWERNGL
                     PIETSY"
     gene            16643..17101
                     /gene="exbB"
                     /locus_tag="PXE26_000640"
     CDS             16643..17101
                     /gene="exbB"
                     /locus_tag="PXE26_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HDL5593251.1"
                     /translation="MEQLFQFLEHHTDFVILGLLGLLSVICLWKAIERIMFYSKVDIS
                     KYDTLEELDIDLTHNLTTISTIGSNAPYIGLLGTVVGILLTFYHLGQSGGDIDAASIM
                     VNLSLALKATAVGILVAIIAMVFYNGFGRKVEENKLKWLALQSKKPHQAV"
     gene            17138..17575
                     /gene="exbD"
                     /locus_tag="PXE26_000641"
     CDS             17138..17575
                     /gene="exbD"
                     /locus_tag="PXE26_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HDL5593252.1"
                     /translation="MKKFDEINIIPFIDIMLVLLAIVLVTASFISQGKIQVNVPKAST
                     TQPMKADDLAKLLTITENNEFFFNDQAITKEQLIAEVATWDKSQKVSLKVDGAVAFEK
                     FVELTDILSANEIKNVAIITKKETAPAPSSTPGSPAQVPAVAP"
     gene            17591..18502
                     /locus_tag="PXE26_000642"
     CDS             17591..18502
                     /locus_tag="PXE26_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDL5593253.1"
                     /translation="MKKKHSRIGLLASLAIHTALIGGTFAWLHNHKVEKIAEQNSLSM
                     EMVAALLEQPQVAVAPDPITEEVKEIEPEKAEVPPEPKLTPEPTPEPEAIPDPTLNPK
                     KEKPKEEKRKERHHHKHKHRHKEKREELQEQEKPKDKPKERPKHHHKHIKALERGPEI
                     KQGIVAKAIPNAAEGEKVVAGVVGGQKNGSPNSTSTTGSANTGASSGNASELAAYKVA
                     LQRALQRKANNSYPQREKMMRKTGTVTIKFTITSSGSITNVSVLNSSGNSNLDNAAVR
                     SAEGLSMPPPPAGFPPTVTVPVRFALE"
     gene            complement(18571..19452)
                     /gene="cysZ"
                     /locus_tag="PXE26_000643"
     CDS             complement(18571..19452)
                     /gene="cysZ"
                     /locus_tag="PXE26_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate transporter CysZ"
                     /protein_id="HDL5593254.1"
                     /translation="MSSVFSEPQNQVGLGFHYFIYGWRLLLQRQFLPFVIFPILINTV
                     LMVGLIWGFFANIGGLLDMLLPSWLEWLSFVLIPLIFLMILVGFYFAFTTLANFVAAP
                     FNALLAEKVELQLTGEPLGDMSFGAMLKDVPRMLKREWQKMMYSIPRLIALFVLGFLP
                     VVGQTVAPVLTFIFGAWLIAIQYCDYPFDNHKISFQRMRNALSQSRTLNFTFGALVSL
                     FTMIPFVNLVVMPVAVCGATALWVKEYRNFFLNNQTGEFSKADYTFTKVNSTSLSTET
                     RTGEVSPNVRNGDIRKQ"
     gene            19564..20466
                     /gene="zipA"
                     /locus_tag="PXE26_000644"
     CDS             19564..20466
                     /gene="zipA"
                     /locus_tag="PXE26_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HDL5593255.1"
                     /translation="MELHIIFFILAGLLIAVLIGFSLWSARREKSNIFSNTFSTRPIA
                     VPPQNNKMSNSIPTSLQPQNEDYQAMSVPEENPQQIQQEVESSLQNIKISLPGGNPQQ
                     QPEQIQPIQSVAEPTVSTYGQKISNQQHIQYNTPDFANPMVNTVVEETPQAVAIEPQE
                     TQSAEEENPFVTLYLYAPQNEAFRGDFVVHYLEEVGLRFGEHQIFHRHQHIDDSLSPI
                     IFSAANLMNPGTFDLNNISNFATAGLVLFMQLPTEGNDVANMKLLISNAEHLAASLGG
                     FLYDDNQQPFGEESRQRYMQRVMH"
     gene            20531..22588
                     /gene="ligA"
                     /locus_tag="PXE26_000645"
     CDS             20531..22588
                     /gene="ligA"
                     /locus_tag="PXE26_000645"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HDL5593256.1"
                     /translation="MSLFNQTSLFEENATPELVEKIETIRQTLRQYEYEYHVLDNPSV
                     PDAEYDRLMNELKNLEWQHPELISADSPTQRVGAKPLAGFAQVTHEIPMLSLDNAFSD
                     EDLDGFLRRMESYITASPSQLEFCCEPKLDGLAVSILYENGILTRAATRGDGTTGEEI
                     TANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSGFNELNEKALAKGEKTFANPRNAA
                     AGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATHFERLQWLKSLGIPVNNEIRLV
                     QGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQEQLGFISRSSRWAIAYKFPAQ
                     EEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLGIVIGDTVI
                     IRRAGDVIPQITGVMLERRPENAKKIEFPTACPICHSAVTRVEGEAVARCTGGLFCEA
                     QRKEALKHFVSRKAMDIDGVGEKLIEQLMARELIETPADLFKLDHTTLMRLERMGEKS
                     AQNALNSIEKAKNTTLPRFLFSLGIREVGEATALNLANHFGSLEAIRQATFEQLKEVQ
                     DVGEVVANRIVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLT
                     QLTRDEAKALLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL
                     TQH"
     gene            complement(22651..23919)
                     /locus_tag="PXE26_000646"
     CDS             complement(22651..23919)
                     /locus_tag="PXE26_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDL5593257.1"
                     /translation="MTQQIEHSTWQSKFAAMGPGILMASAAVGGSHIIASTQSGAIYG
                     WQLAIIILLANLFKYPFFRFGVQYTLASGKTLLEGYKEKGKFYLIIFFILNVFAAMIN
                     TAAVAIVSAAILKFIFSALGIPLDLSIPMAGTIVIVVTWGILLLGQYKFLDTLSKWIM
                     IALTISTVSAVIIAALKGGVEIAPDFVEPSPWNLAALVFIVALMGWMPAPIEISAINS
                     MWVIAKKRLSKVNYEDGIFDFNVGYIGTAILAIVFLALGALVQYGSGEKVEQAGVAYI
                     AQLIKMYAFAIGDWSKLLIAFIAFMCMFGTTITVIDGYSRANAEALRLISGRKQHSQT
                     ELSIWMTVTALIGILIISQFMSDVAKMLQFAMISSFVSTPVFAWLNFSLVLKGEHRAK
                     GWLFWLAVIGLIYLTSFTLLFLAQQFKLIG"
BASE COUNT         7255 a         5207 c         4740 g         6768 t
ORIGIN      
        1 tagtttcagg atcatgttaa tcatttcaag gtggaaacgc ttgtttttag attagataaa
       61 aaataaggag ggtcgaaata gcgggtatac agaaagtgct tatagccaaa aaatagtcta
      121 ttgttattga atacaagcgg tctattttgt cacatttttg ccaaatttgg ttaaaaaacc
      181 aaccgcttgt aatcttaact gaagatagat agttttttat tttttctaca actctacagg
      241 gctggattta ttgcagaatg gtacttgcca ctaactatca tcactcccag gataatttat
      301 agaaacaata cgagaaattg tgttaataaa tgaaatgaat aacgttaatc cgataatggt
      361 gggaaaccac ctaaatcttt taaacgattg accattgcac agaaaagttc tgccgtgcgc
      421 tcggtatcat acaacgcaga atgcgcttgc ttaccgtcaa acgggatttt tgccacctgg
      481 caggctttta ccaacacggt ttgcccatac ataaaaccgg caagggtggc ggtgtcaaac
      541 atcgcgaaag ggtgaaaggg atctcgcttg gcattaattc gtttaatcgc agcctgtaaa
      601 aagccctgat cgaacgctgc attgtgggca acaatcaccg cccgttggca gccttgctcc
      661 ttcattgctt tgcgaaccat tttgaacatt tccggaatcg caatattctc cgcaaccgct
      721 cctcttagag ggttgtcaat atcaatgccg ttgaatttta atgactcagg gttaatattc
      781 gccccttcaa atggcgcaat atgaaaatgg cattgttgat ccggcactag ataaccttgc
      841 tcgtccattt ttaaagtaat tgccgccaat tccaataagg catcagtttg ggcatttaag
      901 cctgctgttt ccacatcaat cacaaccggt aaatagccac gaaaacgatg ctttaataat
      961 ttataatcta tttgttccgt tgtctgttcc atttatctat caacctaaaa tacaagcggt
     1021 ctgatttgca aaatttttta caaatccgac cgcttgaata ttcatattcg caaaaattag
     1081 tttcctaacg ctgctttcgc atctttattc tcaataaatt cgattttata accgtccgga
     1141 tcttcagcaa aggcaatcac agttgttcca cccaataccg ggcccggctc acgggtaatt
     1201 ttaccgcctg ccgcacgcac atcttcaatg gttttgtaaa tatcatctac gcctaacgca
     1261 atatggccat aagccgtgcc tagctcatat ttatccacac cccagttata agtcagctca
     1321 atcaccgcac tttcgctttc atcggcatag cctaaaaatg ctaacgaata cttatactgc
     1381 tcgttctcgc ttctacgtaa cagacgcata cctaacacat cggtataaaa cttaattgag
     1441 cgctctaaat ctccaactcg taacattgta tgtaaaattc gcatattttc ttccccctga
     1501 agttaaaaaa cgacccctat tatggcataa tcttggctta aaatcatttt ctttatacct
     1561 tttgggatta tctatggctc acgatcacga ttcgccgtca aaacttgaaa tttcaaccca
     1621 cgctgcactg ccaatggtat taatgctgtt tattgaaatg gctcttaact tctactctgc
     1681 accgaaaaat tcaattttta tttctcctta cttattggcg tttttcgtga cctcattaat
     1741 cagtttttta gtgctatgga aaggcgaaat ctgccgaggg caagccagcc gtttaagctt
     1801 tattttaccc tttttactta ttttcgccgt agggaatttc ctttattcca taggctttac
     1861 gccaaagcat aacccaatgg cggtggcaag cattgctgca gtttttgcct gcttaatcta
     1921 cttccgcctg ccggaagatc aaaccttata taacacattg atgtattgtg gtttggctat
     1981 atcaagtatt ggtattatcc aatatttagc catttattgg tttgaactgc cttcattgtt
     2041 taacgggatt cgagccaaca atttcgccca agtgctgtta ggcattttat tagccggctg
     2101 gtatttaatg ttagcgaaaa gccgtttaga tgttttcctc aaactgttgg tgaaaaccgc
     2161 ccttgtggtg ctgattctca attattgctg gacagctttt gtgctttatc aacatctaca
     2221 aattatgccg gatatgccat tgctttcatt tatcatctat tttgcagcac aatttgtgat
     2281 tttattgatg ttggcgtggt tattacttgg aaaaaacatc aaaaatccga ccgcttggac
     2341 agttgctacg ctgttagcga ttttataccc tttcgctaat gtagtctgat ttatgaaacg
     2401 ggcattaaaa tttttcggca ttgcaaccgt tctatctgtt gtggcaatct actatttttt
     2461 aatgcccagc cactatcttg ccacgccgat taactggatt ttgccgaaag cgtggaaagt
     2521 tcaactccca caaggcttaa acctgaattg gcaaggctca tcacttgctc aatttcaact
     2581 ctcttatcga gattgcccgc tactaagtgc cgataaaacc gatttgggtt ggattgagaa
     2641 aaaccatctt tctgtcgata aattggatat tgattaccgc tgccttgcct tgtttccaca
     2701 aaatgaacac agcaattccg acacttcact caacgcattg ctggcggtca ttcctgatgg
     2761 cgaagcgact atccacgccc ttaactggaa aaatttgcct accgatttca acccaagact
     2821 tcagcggctt tttgagcaaa cagctattaa actctcactt tcaaaaggtg aaattcaggc
     2881 aactgccgct caacaagcgg tcaaatttgc agcaaatttt gcaaatgggc ggttgaatgc
     2941 cgatttatca tatcaaccga atgaaaaaga acagcataat cttaggattt cagcagaaat
     3001 tgaggacaat tttacccaac tgccgcccac tatttccgct gaatatgatt ggcaattatc
     3061 ttatgaaatc atcgccaata aagccttgca aaagggcgct ctattctcag ttggcaaaaa
     3121 aatgccgcac aaaagttaga aggcaactgg caggttgaac ttgccgaaag tgaaaataac
     3181 aaactggatt tcccttttct gtttgatggg gaaagcctag aaattcaaca agggcggttt
     3241 gattggcact ttacccaaca atttccactg caagggtttg ttagcaccaa gctcacaccg
     3301 aaatcattca accaaaacgg ctttttgcca ctcaaaacgg cgattcgtat cagcctgctt
     3361 tcccaaaaca gttggggtaa aggcaatatt gtaatctcca attcagacgg agaaataacc
     3421 gaaaaagggc tgaatttacc gcttcgtttg acgggtaata tcaaacacgg caattttatt
     3481 ctttacagta gcgtgccact ggattttcaa ggtaattttg acgatttaag cgtaaaattt
     3541 ttgcctagct ccctacttcg tttgaccgga aaagagcggt atttaaccat tgaagattta
     3601 cgttttccac ttgccggaat taaaattgac aagcacggta ttcacggacg actgcacgca
     3661 attttaagag ggcaaagccc tgattttaac aatatcgagt tccatttaga cggacaagca
     3721 caaaatttta aggctggagc cttagatttt ttccaagatc ctaaagatgc taacgcagta
     3781 aaagacagtt ggaaatggcg aatttgggga gcatctatcc tcaaagcctt caacagtaaa
     3841 gtgaatttaa gcggcagagg gcaatggcat aaacagcttg tgcggttgga agaactcaaa
     3901 ggcgatttag ccaccgtaaa gttagcagat acaaccattt ctaaaatcac gcttaacaat
     3961 acgcaagcta ttcgatttaa tgtcaaaaaa ttcacccttg acggagcggt aatgttgcaa
     4021 tcacctgaga ttgccttcag ttatggcggt gtgctaccca aaccacgagt gaatctcgcc
     4081 tttgatggtg aagtcgaaaa actacgtttt aaaggagcgg tgaataccac cgaactcggc
     4141 ccactcaaac tgttcgcccg ccgccaatta agccaagatg ccagccaaat tatcggcaaa
     4201 ctttattggc cggagcaatc tgctcaaggc ttccagccgc tttttccgtt tcgtagccaa
     4261 tgggtgatca acaacggtac aattcggggc gaaacggcgt ttagtgccgg cagtaaaaac
     4321 gggctgattg ccggtgggca tttagccatt cgtaacggcg gtttatcttt acctaatggc
     4381 gaagcaaaag ggattgaatt ttcgcttccc taccgctacc aaaacggacg ctttcatttc
     4441 ggagccaaaa aaccgcttga tgtaaaaatt gcccaaatca aactggggga tttagcatta
     4501 gataacgctt caatgaaact caacggttac tacccttata ccaaagctaa gccattgaat
     4561 ttaaatcaat tatcctttga tttgtttggc ggtaaactga atgtaaaacg ctttgcctta
     4621 ccacaaaccg aactggctta cctgaattta gagcggattg actttgagca aattttgcaa
     4681 tttatgcaat atcagcaaat tgatctcaaa ggcaaagcca acgctatctt gccgttttgg
     4741 ttaagcggaa aaccttgcta tatttgcgat ggcttactga cacaggcgga aacttcctat
     4801 ttaaccttta cccctgaatt gttgtcagaa atgcagaaaa gtggttacac cgagcaaatt
     4861 ttgttacatt tagtagataa aagcacgatt aacgattttc gcagtctgat taatgtcggg
     4921 ccgaaaggcg atttagtatt agacggaaaa ttaaaattat cttccaatca aaataaatca
     4981 aaagtgaatt taaactataa tcaccgagaa aatctgtttg atttgtggca cttaattaac
     5041 tatggctcac aatttgaaca aaaattagaa aattacctct atcaaaaact ggaacgatga
     5101 taaagaatgg aataaatatg aaaccggcca cattttattt tgcaatattt ttactgaatt
     5161 tgaccgcttg tacgccgaaa gtacagcttg aaacgccaag tgaaggcatt acgattaata
     5221 tgaatgtggt cgttgatcac cgcattgatg tgaagatgga cgagaaatcc cgagcggtga
     5281 tcaccaaaag tgagaacaaa acgaaaaatt agctgaagat aatcatttga tgatctttaa
     5341 attgtgcata aatatcggct aatttttccc ctgtcggtag tactaaatca ggcgttaaat
     5401 caaacatcgg cacaatcaca aattcccgat ttttcatctc gatatgcggc acgttcaaac
     5461 gctcggtttg aatttgctga ttgccgtaca aaataatatc cagatctaaa gttctctccc
     5521 cccaacggcg tacacgcact cttccctgct cattttcaat gctttgcaat ttatccagca
     5581 atgcagtggg cgataggtcg gtactaaatt ttgctaccgc attgacataa tcaggctgat
     5641 cttgcggtcc gacaggcttt gagccgtaga acgggctgat ttcaaactca tttgcaaatt
     5701 tttttaattt ttcgaccgct tgtttaagct gctcaagcgg attctcaagg tttgatccta
     5761 aggcgatata gacggtttgc ataaaatata cttacaaata taacaataaa ctctctcccc
     5821 ttgtgggaga gagaccgctt atgagcgttc agcgaaataa gcagagagag gggacaagcg
     5881 gtaactttta ttaaattttt tacacatttc ccctctccct gatttttctt ctgaacgaag
     5941 aaaaatcgct ccctctccca caaggggaga gggaaatata ttaattatcc atttactttc
     6001 ggttttttct taaaggttct acggcggcgt gttttctttt tctcgctagg cacattgcct
     6061 aaatgacgaa ccgatttcag caattcagta cgctgacctt cattgctaaa ttggtattcg
     6121 tgccaccaag cggaaagttc gaccaaatcg ccgccttcaa tttctgcacg catcactaat
     6181 aaatcaaacc ctgcacggaa tttgacgtgt tcaagggttt gttgcggtcg gttgccactt
     6241 cgtttcatca tctgaaattg caatgcccaa atatctcgaa tgactgaagt gtgtctgcgg
     6301 tgcaacgcaa tcgcgttgca actttccgcc agcacatcat ttgctgccag catcattgca
     6361 tcgtagctgt tgaagccacc ttcgttttta agctgctcca ttttctcccg gagcggatac
     6421 caaagtagtg cagcaaataa aaacgcagga tttaccggta atttatcggc aattcgctca
     6481 tcagttgaat ttaacgcttt ggtaatcatt ctttcggcat aggaatcacc tttggcagta
     6541 aaaaatgccg gcaataccgg aaacaagaat tgccatagtt catattcacg caaaagctga
     6601 taagttttca gccctgcacc ggtttgtaat aatttgagtg attcgtcaaa caaacgggct
     6661 gccggaatgt tggttaacaa caccgccata tcccgaattg gggaggccgt ggctttatcc
     6721 aagaacatat ccaacttcgc cataaaacga acggctcgca acattctcac cggatcttct
     6781 tggtaacgaa tagtaggctc tccgataagc gaaagtttac ctgctcgtaa gtcttcaata
     6841 ccgttgaaga aatcaaaaat aagattgcgt tttatatcgt aatataaggc gtttacggtg
     6901 aaatcacggc gctctgcatc ttcacggagc gtgccgtaaa cattatcacg cagtagcatt
     6961 ccttcatcgc tgactttaga aattttgtca ttgcgatgag attcgtgtcc tgcacggaaa
     7021 gtcgccactt caaaaatttc acgcccgtaa acaatgtgtg ccaaacggaa acgacgtccg
     7081 attaatcggc attgcctacc aaaaatacgc tgaatttctt caggtctcgc attagtcgca
     7141 atatcgaaat ctttaggctt tttctccaag agtagatctc gaatacagcc acccacaata
     7201 taagcttcat aaccggcaat ctgcaattta tcgacaatcg aaatcgcatt tttaggaaaa
     7261 tccttcgggc taattctata ttggctggca ttcaccgcaa atttcttgtg taacaaatgg
     7321 gagggaggat tatcttgttg tttcttccca cctctataag tcttttggtc cgttaagttc
     7381 ggggctgggc gtttagaacg ggaagttttg ggttctcttt ccgctctttt ttcactctct
     7441 accttttcat ttttctgagc cgacttttta ggcttggaaa ataatgattt aatataatta
     7501 aaaataatac acctctaaat agtaaatgcc tcttaaaaaa gaggcaccct gtaaagttga
     7561 ttataagcct agctgctttt ctcgaatttc agctaaagtt ttacagtcaa tacataaatc
     7621 agctgttggg cgtgcttcta aacgtttaat cccaatttct acgccacagg tttcgcaata
     7681 accatattca tcttcttgga ttttatacaa ggtttgctca atttttttca ataatttgcg
     7741 ttcacgatca cggttacgaa gctctaaact gaactcttct tcttgactgg ctcggtcgtt
     7801 cggatcggca aagttagtca tatcttcttg aagctggctt ttggtacgct ccgcttcttc
     7861 cataatttga ctgtgccacg ctttcagaat tttggtgaaa tgctcacgtt gagcttcatt
     7921 catatattct tcgtcttttt taagctcata aggctcaacg cctgctaatg ctaataaacc
     7981 gagtgaggtt ttagccgctt gagtcataga tatttactcc ttgttccctg tttattggaa
     8041 gttttattgt taaaattatt gcccgaatac agactaactt ccttgtaacc gcactatacg
     8101 aaaaaatcaa catcttcggg ttttaaataa tggcggctat aaataacaca aaaacgactc
     8161 attaatcaaa tgaatttgca aaaattttgc attcaaattg atttgattgc acaaaaaaat
     8221 agccgaacat ccattcggct atttttcaaa cactttttac cagctctttg accaatcggc
     8281 taaccatttt tggatagttt cagtagtcgg tggcgtaaat tcaatggttt tataggttgg
     8341 cattgccgca aaagccggat caacgccgtc ggttaaaacc ggattcatta cgttgtggta
     8401 agaaataata tgttgcgatt ccggtttgtg caaaaattca agaaattgat ttgccaatgc
     8461 tttttgttgg ctgcttttga caatagccgc attttctact tgcaccaaat gcccttcctc
     8521 aaacggagca gccacatatt tatcggtgtt ttcgtgccac ttatgatata aaggcgatgt
     8581 agtatagctt agtaccaaat ccgactcgcc ttttaagaac gctccataag tttcagacca
     8641 acctttgcct accgttaccg tatgttttgc caatgttttc caagcagttg gagcttcatc
     8701 gccatacact tgatttaccc acattaagaa gccccgccca acgctgctgg tacgtgggtc
     8761 ttggtaaatc acttttaaat cttggcgttc caccaactct tttaaacttt ttggtggatt
     8821 tttcagcttc tctttatcgt aaataaaagc ataagaaccc gtgtcataag ggaagaaaat
     8881 tttctgttgg gtttctaatt tggtctttgc ttcaaactcg gcaaacaagc cacttttttc
     8941 ggcttcaggt tgcaggaaat tatcaatacc gaccaccaca tcagctttgg tttttgctcc
     9001 ctccaaacgc aagcggttga acatcgttac gctatcgtca agcggaacaa atttgacatc
     9061 acagccacac tctttctcaa aattctgctc taatttagga gcaggtccat attccgaagc
     9121 aaacgagctg taagtgtaaa cggttaaggt cggttgattg gcataaacac ttgcacttaa
     9181 taacgcaagt gaagagagga taaatttcat aacaattcct tctaaattaa atgaatagaa
     9241 ggatttaaga aaggcaagtt gctatctcaa atccctacgc tgatattaat cagatcaggt
     9301 tctatgggta tttctcagcc acaagcggtt aaatttcggc aaaaatttgc aaatttttac
     9361 gcaaaaacaa ccgcttgttg caccccaatg agaacggctt cattgtaaaa agtttgcagg
     9421 cagatttcaa ccaaagcaaa cgtttgctat ttgtattaaa aatccgtata ctaccgccct
     9481 agtccaaaca aggaactaga aatgaattgc acaacatcgg ttaaatcaaa ttcccaacag
     9541 ctacgcttca actttagagg cgtagctgtt tttctattca tttcaaacca ttcaaaatcg
     9601 ctgttatagc gatttttttt cgcacgcttg caattaccgc aagcggttga gccacattaa
     9661 cagagagaaa aggaataaaa atgagccaat tgattcgtac cctaaaagga catattcgtg
     9721 atgaaatcat caaaaaaggc ggttgggtaa atgcacacgc ccacgcagat cgtgcattta
     9781 cgatgacgcc tgaaaaaatc accgtttacc aaaatgcgaa tctacagcaa aaatgggatt
     9841 tggtcgatga ggtaaaacgt aattcaagcg tagaagatta ctaccgccgc ttttcccaag
     9901 cgattgaatt gatgatttca caaggggtaa cggcatttgg tacttttgtg gatatcgacc
     9961 aagtatgtga agacagagcc attattgccg ctcacaaagc ccgtgaagta tataaaaacg
    10021 acatcatctt gaaatttgct aaccaaacgt tgaaaggcgt gattgaaccc aatgcgaaaa
    10081 agtggttcga tatcggctcg gaaatggtgg atatgattgg tggcttgcct taccgtgacg
    10141 aactggatta cggcaaaggc ttggaagcaa tggatatttt aatggataaa gccaaatcgc
    10201 tcggcaaaat gctccacgtc cacgttgatc aatttaactc acctaaagaa aaagagaccg
    10261 aacaactgtg tgataaatcg attgagcatg gtatgcaagg gcgagtggtt gccattcacg
    10321 ggatttccat cggctcgcac ccgaaagaat atcgaaaaat gctttaccaa aaaatgcgtg
    10381 atagccaaat gatggtcatt gcctgtccga tggcgtggat tgatagcgga cgtaaggaag
    10441 atttacaacc gttccataac gctttaaccc ctgctgatga actcattcct gaaggcatta
    10501 ctgttgctat cggcacagat aatatctgtg attatatggt accgctttgc gagggcgata
    10561 tgtggcaaga actcagcctt ttatcagcag gctgtcgttt tactaaccta gaagaaatgg
    10621 caaatattgc cagtatcaat ggtcgaaaag tactgggttt agtctaactg aataaacgaa
    10681 aggcgaaccc taggttcgcc tttaataaca gcataaccga ttatttaaac aagttaccca
    10741 aaatcccttt tgccgcttga gctaataagt catttgcatc aaagtttttt aagtcttcaa
    10801 cattaccatt cggggttaaa gtatccacga tttttggcaa gaactgggct aataaatcgc
    10861 tcgcatcagc agcatcaaca cccgcttctt gagccacatt ttgaatgttt tcttgcccga
    10921 acacattact gatttgttcg cccgaaacag gtgcattgtc ttcatcgctg ctgatccaag
    10981 tgcgtaacac atcatctaat ccgccttgtt ggaatttggc aatcagccct tcaatcccac
    11041 cttgtgaggc gagtaaattt tgaattaatt gagttgcagt tgattggtta ttgccactca
    11101 atactgaaga agccaatgaa cctaaaatat ttcctaacat aatttctcct atgcaagcgg
    11161 tacaattttg cgaaaatttt gcaaaaaaac agcaaacttc gaccgcttgt aatcacttta
    11221 acgagctaaa atggctcgca ctctttccaa atcttccggc gtatccaccc ccacttgcgg
    11281 ggcttctttc gccggttcga tatgaatttt ttcaccgtgc cataaggctc ttagttgctc
    11341 aagggactca agctgttcta attgtgtcgg ctgccacgcc acatattgtt tcacaaaacc
    11401 ggctcggtaa gcgtaaatgc cgatatggcg taaataacct tgagcggcaa caaaactgtc
    11461 atcacaatcc ggaaaactgt ctctggcaaa cggaatgctg gctcgggaaa aataaagtgc
    11521 cattccgttt ttgtctgcca ccactttcac cgcatttggg ttaaatagct cttctcgggt
    11581 cgctaatttc acaccgagtg ttgccatatt gacttgataa gcatctaaat tttgagctac
    11641 ctgagtaaca attaccggtg gaatcagcgg ttcatcaccc tgaatattca caataatttc
    11701 gctgtcggca atctgcattt tttcgatcac ttccgccaaa cgctcagtgc cggaattgtg
    11761 tttttccgaa gtcatacaga cttccgcccc aaaagattga gcgagggctt caatttcagg
    11821 gtgatcggtg gcaataatca cacggcttgc accggcaagc tgagcttttt cccaaacgtg
    11881 ttgaatcatc ggtttgcctg caatatccaa caacggctta cgaggcaaac ggctggaagc
    11941 gtaacgagca ggaataatta cagtgaattt cataggctat ccttatgctt cttgagcatc
    12001 taagaaacgt tctgcatcca gggctgccat acaacctgtg ccggcagagg taatcgcttg
    12061 gcgatagtta tgatccatca catcaccggc agcaaatacg ccttccacag aagtggcagt
    12121 agcattgcct tccaaacctg atttcacttt aatgtagccg ttttcaagtt ctaattgacc
    12181 ttcaaacatt gccgtattcg gtgcgtgccc aatcgccaca aagaaaccat caaccttaat
    12241 ttcttcgctc aattcttctt tggttgattt taaacgtaag ccggtaacgc ccatattatc
    12301 gcctaacacc tcatcaaccg tacggtctgt gtgcagaata attttgcctt cttcaatacg
    12361 tttttgcaga cgaccaagca agattttttc agcacggaag ctatcacggc ggtgaattaa
    12421 atgcacttca cttgccaaat ttgccaaata aagtgcttct tccacagcag tattcccacc
    12481 accgactacc gcaaccggtt tattgcgata gaagaaacca tcacaagttg cacaagccga
    12541 cacgcctttg cctttgaaat gctcttcaga aggcaaacct aaatatttcg ccgacgcacc
    12601 ggtggcaata attaacgcat cacaggtgaa agtgtataaa tctccgttta gcgtgaatgg
    12661 gcgtttagat aaatccactg aatgaatatg atcaaacacg atttcagttt caaatttttc
    12721 agcgtgcttg agcattttgt tcattaactc tgtgccggta atttgttcaa attcccccgg
    12781 ccagttctcg atttcatcgg ttgtagtgag ctgtccgcct tgttgcatac cggtgactaa
    12841 aaccgggttt agattggcac gggcggcata aacagcagcg gtataaccgg caggccctga
    12901 gcctaaaatt aaaagtttgg tgtgtttagt ggtcataatg aatcctctga ataaatatta
    12961 atgtttattt tagcctaaat ttcagttcaa ctctattttc gttttcgctc aacttttttc
    13021 aattttgtga caaagttaac agaaatccga ctgtgtttct tgtaaattgt gacagtctaa
    13081 ttcatttaaa aggggcaaaa agatgaaaaa attaattaat tcaatagaaa ccgtcttaga
    13141 tgagcaactt tctggttttg tgaaagcaca ttctgattta acacttaaca cagaacctgt
    13201 ctatatttac cgcacaacgc caagtaatca acctaaagta gcccttattt ccggtggtgg
    13261 gagtgggcac gagccaatgc acgccggttt tatcggtaaa ggaatgttag acggagcttg
    13321 ccccggagca atctttacat ctccaacgcc ggatcaaatg tttgaatgcg gtttagcggt
    13381 tgatcgtggc gagggtgtat tgctaattat taaaaactat accggtgatg tgctgaattt
    13441 tgaaacagcc accgagctac ttgcagatag cggtgtaaaa gtcgcaaccg tgttggttga
    13501 tgatgatgtg gcagtcaaag acagtttata tactgccggc cgccgcggtg ttgcaaatac
    13561 agtattaatt gaaaagctgt taggagctgc agcggataaa ggctataact tatccgaatt
    13621 agccaaatta gggcatcagt taaacaataa cgggcattct atcggaattg ccttatctgc
    13681 ttgtactgtg ccggctgccg gtaagccatc atttacttta gctgaaaatg agatggaatt
    13741 tggggtaggt attcacggag aaccgggcat tgaacgtcgc ccctttgaaa atctggatag
    13801 taccgtgaaa caaatgtttg agaccttaat tgctcacggc gattatcaac gtaaaattcg
    13861 ccattggaat acacaaaccc aacaatggga cgaaatcgaa gaaagcaaag tggcattgaa
    13921 aaaaggtgat cgtgttattg ctttagttaa taacttagga gcagtgccac tatccgaact
    13981 ttatgctgtt tatgatgcgt tagaaaaaga gtgccaaact ttcggcttaa gcattgaacg
    14041 cagtcttgtt ggatcatatt gcacctcgct ggacatgcaa ggtatctcta tcacattact
    14101 gaaagttgat gaggatattc tcaaactatg ggatgctccg gtaaatacac cggcaatgcg
    14161 ttggggtgaa taattagatt gaaaggataa gttatgacaa tatcaaaaca acagatctta
    14221 aaatggcttg aaaattgcca acaggtaatg actgaaaaac gggattattt aaccgaattg
    14281 gataccgtta ttggcgatgg cgatcacggt ttaaatatgc agcgtggatt tagtaaagca
    14341 cttgaaaaag cccataccgt gcaagataaa gatatcggca ccctgcttaa aaccgttgga
    14401 atgacattat tatcgcaagt agggggagcg agcggccctc tctatggttc attttttatt
    14461 aaagcggctc aaggtgctac aggcaaagag caactgagct ttaacgagtt actggcactt
    14521 ctacagcaag gagcagaagc tatcgtacaa cgtggacacg cacaagttgg cgataaaacg
    14581 atgtgtgatt tatggctgcc attactcgaa gacttagctc aagccgatag cactcaacca
    14641 attgctcaaa tcttattaca agcggtcgaa aaagcagaaa attttgcaaa tcaaaccgct
    14701 ccattaatgg cgaaaaaagg gcgtgccagt tacttgggcg aacgcagtat cgggcataaa
    14761 gatccgggag caacgtccag ctactatatt tttaaagcct tagctgaagc attacagtag
    14821 gaggggtaaa tggttaattt agtgattgtt tcacatagtg ctaaactggc ggaaggcgtg
    14881 ggggaaattt tggctcaaat ggcacagggg ggctgtaaaa tcgcccttgc cggcggcatt
    14941 gaggatacct caaatcctat cggcactgat gcggtaaaaa taatgcaagc gattgaatcg
    15001 gtatttagcc cagacggtgt gattgtgttt gtcgatttag gcagtgcaat tttaagtacc
    15061 caaaccgcca tagatttact ggagccggaa cttgccgaaa aagtgatcat tagctacgct
    15121 cctttagttg aaggtgcttt tgctgctgta gttgcagcct ctgccggcga tagtttagaa
    15181 gcggtattaa atgaagcgaa cgaagccgct gctcttaagc aggaacaagc caattagtaa
    15241 aaatgccgta tcgaaaaata cggcatttta gttttattag tacaatagtg aataaagctg
    15301 tcttctaaat ttcggcacaa tcgggtctgt acccagtgca gataagattg ccagaaattg
    15361 gctttttacc tcgccgttcg ctacatttaa atccgatttt aaccaatcaa aaagtaacgt
    15421 gagtgcttct tcatttttat gagcttggtg tagctgattt gccaatttaa tcgcaatttc
    15481 aggggttttg ctgttcgcat aatccgcttg aagctgttgt aattcgggcg attcgctggc
    15541 ttgttccaat aattcgattt gggcttgcaa accgtgccaa cggctgtctc tgtcttgaat
    15601 cgggatcgct ttaaggattt cacgagcctc ttccacgctt ttcattgcaa tgtaagtttc
    15661 ggcatagagc aaagcgaaat cgctgttttt cttatcggtc atttcccacg ctgatttcag
    15721 cagcggcaag gcttcggtat aacgctgatc ttgcaataat tccaaggctt gttgaaattt
    15781 cagctcttcc tctttcggta aaatatttgc caaccgaatc cgtaattcct gctcacttac
    15841 tgcaccttga attgcatcaa tcggctgacc gccggcaaac aaatagagcg ttggaatttg
    15901 ttgaatgcga aattgagcag ccaatgcttg ttgctcatca caatttaccg tcgccaataa
    15961 aaattggtta gggttttcat ccgaaatacg acgtagtaag gcatccattt ccaatgaagc
    16021 cacttccctt ggcgaaataa aatgaaacac cgtcggcact tgtgccgctg ctgcccatac
    16081 ttcactaaaa ttctgctcgt ttacatttac aaagtagtcc atacaaaacc ttcttaagct
    16141 aaaaattact ttttatattg tagcattaat aagaagtttc aataggtagc ccgtttctct
    16201 cccacgcttc aaaaccacct tttacactat aaacattctc aaacccttgt tcgattaaaa
    16261 actgtgctgt actttggcta ctcactccgt gatagcaaat cacaaccacc ggttcgtcat
    16321 aatcgacctc gtctaaaaac ttaccataac tctggttggt taaatgaaac gcatcctgtg
    16381 ggtggctgta aacataacgg cgggcatcac gcacatcggc aagcaccgca ccttcgtttt
    16441 cgattaattc ccaagcctgt tgcgggctaa tttctttaaa tgtagtttcc ataatcactt
    16501 tccctcaaaa aacgtgcaac tataccataa aattctaaaa agaatggcta ttattccaag
    16561 ttgaaaattt gatgtttgtc agatataatt gcaaactatt ttcaaatgca ctgatttaaa
    16621 actaccacag tttgaggatt ttatggagca attatttcaa tttttagaac atcatactga
    16681 ctttgttata ttaggattac taggcttatt aagcgtaatc tgcctttgga aagctattga
    16741 acgtattatg ttttattcca aagtagatat ttcaaaatac gataccctcg aagaattaga
    16801 catcgattta acccacaatt taactaccat ttcgactatc ggctctaatg ccccttatat
    16861 cggcttatta ggaaccgttg tcggtattct tttaactttc tatcatttag gtcaatcagg
    16921 tggtgatatt gatgcggcct ctattatggt aaacctttct ttagctctaa aagccactgc
    16981 tgtcggtatc ttagtggcaa ttattgcaat ggttttctac aatggttttg gtcgtaaagt
    17041 ggaagaaaac aaactgaaat ggttggcatt acaatcaaaa aagcctcatc aagcggtgtg
    17101 atttagtcca ttttttgcaa attaataagg cagaacaatg aaaaaattcg atgaaatcaa
    17161 catcattcca tttattgata ttatgttggt attactggct atcgtgttag ttaccgcctc
    17221 tttcatttct cagggtaaaa tccaagtaaa tgtaccgaaa gcaagtacaa cacagccaat
    17281 gaaagcagac gatttagcga agcttttaac cattaccgaa aataatgagt ttttctttaa
    17341 tgatcaagca ataactaaag agcaattaat tgctgaagtt gccacttggg ataaaagcca
    17401 aaaagtgtca ctcaaagttg atggtgcagt cgccttcgaa aaatttgtgg aattaaccga
    17461 tatcctttct gcaaatgaaa ttaaaaatgt agcaatcatt actaaaaaag aaactgctcc
    17521 agcaccttca agcacacctg gtagccctgc acaagtgcca gcagtcgcac cttaaatagg
    17581 gtaaacaggt atgaaaaaaa aacattctcg tatcggctta ttggcatctt tggctattca
    17641 cactgcctta attggtggca cttttgcttg gttacataac cacaaagtgg aaaaaattgc
    17701 cgagcaaaac tctctttcta tggaaatggt ggcagcatta ttagagcaac ctcaggttgc
    17761 cgttgctccg gatcctatta ccgaagaggt caaagaaatc gaaccggaga aggcagaagt
    17821 accacctgaa cctaagctta ctccggagcc aactccagag ccggaggcaa ttccagatcc
    17881 tacgctaaat ccgaaaaagg aaaaaccgaa agaagaaaag cgtaaagagc gacaccacca
    17941 taaacataag catcgtcaca aagagaaaag ggaagagcta caagagcaag aaaaaccgaa
    18001 agataagcct aaagagcgcc cgaaacatca tcacaagcat attaaagcat tagagcgcgg
    18061 gccagagata aaacaaggta ttgtcgctaa agcgattcca aatgcggctg aaggtgaaaa
    18121 agtggttgcg ggggttgttg gagggcaaaa aaacggttca ccaaattcaa cctcaactac
    18181 aggttcagca aatactgggg ctagcagtgg taatgccagt gaacttgctg cttataaagt
    18241 cgcattacag cgagcattac agcgtaaggc gaataactct taccctcagc gtgaaaaaat
    18301 gatgcggaaa accggtacag ttacgattaa atttaccatt acatcgtccg gttcaattac
    18361 aaatgtatcc gtactcaatt catcgggaaa tagtaattta gataacgctg cggtacgcag
    18421 tgcagaaggt ttgagtatgc ctccgccacc ggcaggcttc cctcctacgg taacagtacc
    18481 ggtaagattt gcccttgaat aaaaacagcc ctcaaaagca atgtactttt gagggctttt
    18541 tattgcaaaa aattgactaa aaatgaccgc ttactgcttg cgaatatcgc catttctcac
    18601 attcggactc acttcacccg tacgagtttc tgtgcttaac gaggtagaat ttactttcgt
    18661 aaaagtataa tccgctttgc tgaattcacc tgtttgatta tttaagaaga aattgcggta
    18721 ctcttttacc cataatgccg ttgcgccaca aactgccaca ggcataacta ctaaattcac
    18781 aaatggaatc atcgtgaata ggctcactaa agcaccaaag gtaaaattta aagtgcgaga
    18841 ctgcgacaac gcatttcgca tacgctgaaa actgatttta tggttatcaa acggatagtc
    18901 acaatattga atggcgatca accaagcacc gaagataaaa gtcagcacag gtgctacggt
    18961 ttgcccaacc acaggcaaaa agcctaatac aaaaagagca atcagccttg gaatgctata
    19021 catcattttt tgccattctc gtttcagcat tcgaggcaca tcttttaaca ttgcaccgaa
    19081 tgacatatcg cccaaaggct cgccggtaag ttgcagttcg actttttctg ctaataacgc
    19141 attaaaggga gcagcaacaa agttagccaa ggtagtaaaa gcaaaataaa atcccactaa
    19201 tatcatcaaa aaaatcagtg gaatcagtac aaagctaagc cattccagcc agcttggcag
    19261 taacatatcc aacaagccac cgatattggc aaaaaatccc caaatcagcc ctaccatcag
    19321 cacggtatta ataagaattg ggaaaatcac aaaaggcaaa aattgacgtt gtaacaataa
    19381 ccgccagcca tatataaaat aatgaaagcc taatccgact tgattttgcg gctcagaaaa
    19441 aactgaagac ataatgattc cttattttct atcaaaatta attagaaata tggtaagcta
    19501 cgcacattat tttcgcaaat atgaaaatac attttttatt gattatttga taaagaggac
    19561 acaatggaac tgcatattat tttttttatt cttgccgggc tactgattgc tgtactaatt
    19621 ggatttagcc tttggtccgc tcgtcgtgaa aaatcaaata ttttttcaaa tacattctcg
    19681 accagaccta ttgctgtgcc accacagaat aataaaatga gcaatagcat cccaacctca
    19741 ttacagccac aaaatgagga ttatcaagca atgtctgtgc cggaagaaaa tccgcaacag
    19801 atacaacagg aagttgaaag ctcgctgcaa aatatcaaaa tcagtttgcc gggcggaaat
    19861 cctcagcaac agcctgagca aattcagccg atacaatcgg tagcagaacc aacggttagc
    19921 acttacggtc agaaaatttc taatcagcaa catatccaat acaatacgcc ggattttgca
    19981 aacccaatgg tgaacacagt ggtggaagaa acacctcaag cagtagctat cgaacctcaa
    20041 gaaacccaat cggcagagga agaaaatcca tttgtaaccc tctatcttta cgcaccacaa
    20101 aatgaagctt tccgcggtga ttttgtagta cattatttag aagaagttgg cttacgtttt
    20161 ggcgaacacc aaattttcca ccgccatcaa catattgatg attcattaag tccgattatt
    20221 ttcagtgcag caaatttaat gaacccagga acctttgatt taaataatat ctcaaacttt
    20281 gcgacagctg gtttagtgct atttatgcaa cttccaaccg aaggcaatga tgtggctaat
    20341 atgaagttgt taatcagtaa cgctgaacac ttagcagcat cgttaggggg attcttatat
    20401 gacgataatc aacagccttt tggcgaagaa tcccgccaac gttatatgca acgtgtgatg
    20461 cactaattgc gaaaaaatta ataaatccga ccgcttgtac aagcggtctt ttttgtagag
    20521 aattttacca atgtctttat ttaaccaaac ctctttattt gaagagaatg ccacgcccga
    20581 gttagtcgag aaaatcgaaa ctattcgcca aacattgcgt caatacgagt atgaatatca
    20641 cgttttagat aacccaagcg tacccgatgc cgaatacgac cgtttaatga acgagctgaa
    20701 aaatctggaa tggcagcacc cggaactgat tagtgccgac tcgccgactc aacgggttgg
    20761 tgccaaaccg ctggcaggct ttgctcaagt cacccacgaa atccctatgc tttcgttgga
    20821 taatgccttc tccgatgaag acttagatgg ctttttacgc cgtatggaaa gctatatcac
    20881 cgcctctcct tcgcaactgg aattttgttg cgaacctaaa ttagacggct tggcagtgag
    20941 tattttatac gaaaacggca tacttacccg agctgcaacc cgtggcgatg gcacaaccgg
    21001 cgaagaaatt accgctaata tccgcaccat tcgcaatatt ccgttaaagc tcaacacgac
    21061 taatccacct gctcgattag aggtgcgagg cgaagtcttt atgccacaat caggctttaa
    21121 tgagctgaat gagaaagcct tagctaaagg cgaaaaaacc tttgccaacc ctcgcaatgc
    21181 cgcagcaggt tcgcttcgcc agttagatcc gaaaatcacc cgccagcgtc cgttagtgct
    21241 gaatgcctac ggaattgggg tgtatgaaag cgatgacgaa ctgccagcca cccatttcga
    21301 acgtttgcaa tggctgaaat cgcttggtat tcctgtaaat aatgaaatcc gcttggttca
    21361 aggcaaagct gctctcttgg cttattatgc ggagattcag gctaaacgcc caacattagg
    21421 ctatgatatt gatggcacag tattgaaagt aaatgacatt gccctacaag agcaactcgg
    21481 gtttatctct cgctcctctc gttgggcgat tgcgtataaa tttccggctc aagaagaaat
    21541 gacaatcctc aaagaagtgg acttccaagt gggaagaaca ggggcaatca cccctgtggc
    21601 gaaattagag cctgtttttg tcgctggcgt aacggtaagt aacgcaacgc tacacaacgg
    21661 tgatgaaatc gagcgacttg gtattgtgat tggcgatacg gtaattattc gccgagcggg
    21721 cgatgtaatt ccgcaaatta caggcgtgat gttagaacgc cgcccggaaa atgcaaaaaa
    21781 aattgaattt ccgaccgctt gtcctatctg tcactccgct gttactcggg tagaaggcga
    21841 ggcagtagca cgctgtaccg gtggtttatt ctgcgaagct caacgtaaag aagccttgaa
    21901 acatttcgtt tcacgcaagg caatggatat tgacggcgta ggcgaaaaac taatcgagca
    21961 gttaatggct cgagagctga ttgaaacgcc tgccgatctg tttaagctcg atcacactac
    22021 cctaatgcga ttagagcgaa tgggggaaaa atcggctcaa aatgctctca acagcatcga
    22081 aaaagcaaaa aacactactc ttcctcgctt tttattctcg ttaggtattc gtgaagtggg
    22141 cgaggcaacc gctctcaact tagccaacca ttttggtagc ttagaggcga tccgccaagc
    22201 cacttttgag caattaaaag aagtgcaaga tgtgggcgag gttgttgcca accgtattgt
    22261 cagcttctgg caagaaccgc ataatgtgga agtggtggaa gatttgatcg ctcaaggtgt
    22321 acgttgggaa aacgttgtga aagccgaaat tgtagataac ccgttaaaag ataaaaacgt
    22381 ggtcttaacc ggcacgctaa cccagctcac ccgtgatgaa gccaaagccc tattacaaag
    22441 tttgggctgt aaagtctccg gctcggtttc cagcaaaacc gattacttaa tcgccggcga
    22501 aaaagccggt tccaagctgg caaaagctca agagttggga attcagattt taagcgagca
    22561 acaatttatt gagcttactc aacattaaca aacaaagggg cagatgattg aaatctgccc
    22621 cttattctat ctattgaatg cttaaaagca ttaaccaatc aatttaaact gctgagctaa
    22681 aaacagtaac gtaaagctag ttaagtaaat taagccgata actgccaacc aaaataacca
    22741 gccttttgca cgatgctcac cttttagcac taaagagaaa tttaaccacg caaaaacagg
    22801 ggtagaaaca aatgatgaaa tcattgcaaa ttgtaacatt ttcgccacat cactcataaa
    22861 ttggctaata attaaaatgc cgatgagtgc agttaccgtc atccaaatac ttaattctgt
    22921 ttgtgaatgt tgcttacgcc cgctaattaa acgcaacgct tctgcattcg ctcgtgaata
    22981 tccatcaata acagtgatcg ttgtgccgaa catacacata aatgcaataa atgcgattaa
    23041 aagcttagac cagtcaccaa tcgcaaaagc atacattttg attaattgag caatataggc
    23101 aacaccggct tgttctactt tctcacctga accgtactga actaacgcac ctaatgctaa
    23161 aaaaacaatc gccaaaattg ccgtgccgat ataacccaca ttaaaatcaa aaataccgtc
    23221 ctcataattc actttactta aacgtttttt cgcaataacc cacattgagt taatggcaga
    23281 aatttcaatt ggtgcaggca tccagcccat taatgcaacg atgaacacaa gtgctgctaa
    23341 attccacggc gaaggctcta cgaaatctgg agcaatttca acgccacctt ttaaagcagc
    23401 aatgatcacg gcagataccg tagagatggt taaagcaatc ataatccatt tagataatgt
    23461 atctaagaat ttatattgcc ctagaagtaa aataccccaa gtgaccacaa tcacaatagt
    23521 tcctgccatt ggaatgctta aatctaacgg aatacctaaa gcagaaaaaa taaattttag
    23581 aatcgctgct gaaacaatcg ccaccgcagc tgtgttaatc attgcagcaa aaacgttaag
    23641 gataaagaaa ataataagat aaaactttcc tttttctttg tagccttcca ataaagtttt
    23701 accgctagct aaggtatatt gcacaccaaa gcggaaaaac ggatatttaa ataaattggc
    23761 taacagaata ataatcgcca gctgccagcc ataaatcgca ccagattgtg tagaggcaat
    23821 aatatgcgaa ccacccactg ccgcagatgc catcaaaatc cccggcccca ttgcagcaaa
    23881 tttactttgc caagttgaat gttctatttg ttgtgtcata tagctttcct tatcacatta
    23941 ctatcaaaac aagatggttt cattctactt
//
LOCUS       DANLZD010000022        23602 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.022, whole genome shotgun sequence.
ACCESSION   DANLZD010000022 DANLZD010000000
VERSION     DANLZD010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 23602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23602
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.022"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            221..1828
                     /gene="pckA"
                     /locus_tag="PXE26_000647"
     CDS             221..1828
                     /gene="pckA"
                     /locus_tag="PXE26_000647"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HDL5593258.1"
                     /translation="MLNRIEQELADLGITNVKEIVRNPSYEQLFEEEMKSDLKGYEKG
                     VLTNLGAVAVDTGIFTGRSPKDKYIVLDETTKDTVWWTSDAAKNDNKPMTQSTWQSLK
                     TLVTDELSNKRLFIIDAFCGASPEHRINVRIITQVAWQAHFVKNMFIRPTEEELKDFK
                     PDFVVMNGSQVTNPNWKEQGLNSENFVAFNITEGVQIIGGTWYGGEMKKGMFSMMNYF
                     LPLKGVASMHCSANVGEEGDVAVFFGLSGTGKTTLSTDPKRKLIGDDEHGWDENGVFN
                     YEGGCYAKTINLSIENEPDIYRAIRRDALLENVVVREDGTIDFDDKSKTENTRVSYPI
                     YHIDNIAVPSKAGHAKKVIFLTADAFGVLPPVSKLTPEQTKYYFLSGFTAKLAGTERG
                     ITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMEAAGAEAYLVNTGWNGTGKRISIKDT
                     RGIIDAILDGSIEKAEMSTLPIFNLAIPTALPGVETHILDPRNTYEDKAQWQAKAEDL
                     AGRFVKNFEKYATNEEGKALIAAGPKL"
     gene            1921..2922
                     /gene="bioB"
                     /locus_tag="PXE26_000648"
     CDS             1921..2922
                     /gene="bioB"
                     /locus_tag="PXE26_000648"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HDL5593259.1"
                     /translation="MTTFQLRLKAKDELTPHPTAQYWRKCQVEGLFDLPFMDLVFRAA
                     QVHRENFDANAIQLSTLLSIKTGGCPEDCEYCPQSARYDTGIEKQTMLDVETIVEKAK
                     IAKERGASRFCMGAAWRGPRPKDIKVVSEIINAVKSLGLETCGTFGMLEEGMAEELKQ
                     AGLDYYNHNLDTDPERYNKIIHTRNHEDRMDTLGKVRNAGLKVCCGGIVGMNETRPER
                     AGLIASLANLDPQPESVPINQLIKVEGTPLTNAEDLDWTEFVRTIAVARITMPQSFVR
                     LSAGRTTMPEAMQALCFMAGANSIFYGDKLLTTENPEEDHDRQLMDKLDLYPLQYIA"
     gene            3082..3179
                     /gene="ffs"
                     /locus_tag="PXE26_000649"
     ncRNA           3082..3179
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="PXE26_000649"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            3214..3921
                     /gene="gloB"
                     /locus_tag="PXE26_000650"
     CDS             3214..3921
                     /gene="gloB"
                     /locus_tag="PXE26_000650"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HDL5593260.1"
                     /translation="MLQITPIPALKDNYIWAIRNGQDVIIIDPSEHQPALNFIAKNAL
                     NLTAILITHNHHDHTDGVSGIVEQYPNIPVYGPQEVAEFANVIVSPEQHISLFGYDVR
                     IIESGGHTAGHISYLFGYDYLFCGDALFSGGCGRVFTGDYQAQFDALQRFKNLPNSVK
                     AYPAHEYTKSNLKFAEAVLPPSCVLSEYQEQVDLLRSQNKPTLPTTIGLEMQVNPFMQ
                     AVDLAEFIALRQQKDNF"
     gene            4080..4793
                     /gene="uppS"
                     /locus_tag="PXE26_000651"
     CDS             4080..4793
                     /gene="uppS"
                     /locus_tag="PXE26_000651"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HDL5593261.1"
                     /translation="MNFDPQNMPKHVAIIMDGNGRWAKQKGKLRIFGHQNGVKAVRSA
                     VSFAAKHHIQVLTLYAFSSENWSRPETEVSALMSLFMKALDSEVKQLHKNNIRLKIIG
                     DKSAFSENLQKRIAESEKLTENNTGLILNIAANYGGYWDIVQAAQQLAVHVKSEQLAV
                     EQITPALFQQHLVTENQPQVDLLIRTSGEQRISNFLLWQIAYAELFFSPVLWPDFNDE
                     AFSDAIYAYQQRERRFGGC"
     gene            4817..5686
                     /locus_tag="PXE26_000652"
     CDS             4817..5686
                     /locus_tag="PXE26_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HDL5593262.1"
                     /translation="MLKERVLSAIIMIIAVLAAIFWLSPLPLTLVLSAIVVAAMWEWA
                     QFAGFKHPVPRAIVAMVTICLLLFAIVANTDYIRATRFITDETTPILFIGCIWWLIAL
                     VLVATYPNSAKLWEKSVAAKFLFGLATLVPFLIGTLALRFHNYAFDPYQGTYLFLYVC
                     LLVWGADSGAYFAGRAFGKRKLAPKVSPGKSWEGVIGGVLTSSLIAFTFLQLTPANVF
                     GKALATTPFILVSVGMVAISVLGDLAESMFKRQAGIKDSSQLIPGHGGILDRIDSLTA
                     AVPFFATFFFFVL"
     gene            5690..7000
                     /gene="rseP"
                     /locus_tag="PXE26_000653"
     CDS             5690..7000
                     /gene="rseP"
                     /locus_tag="PXE26_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HDL5593263.1"
                     /translation="MTSIIAFFILICVLVFVHEYGHFWAARKCGVKVIRFSIGFGKVL
                     FKKKDKQGTEFVFSLIPLGGYVQMWNDETDINAPAQQALNTKSVLQRAFIIIAGPAAN
                     FIFAILAYWVVFIAGIPTVKPVIGEILPNTIASQARIPTELEITKIGHQSIQDWESAS
                     LALVGFVGNKNVPLEGNINGNSTQKYELDLSNWSIDSAKENPLTALGIRPKSAKVTAE
                     IKQVVENSPASQVGIQAGDRILQINQQPFNWFNLVELVQAGKPIELKIEQRGQIKDLV
                     VQPEKKDERYIIGVIPSYEPLADKYRTELKYDILTAFYKSIEKVWSLTQTILQFIGNL
                     ISGDLSIKNLGGPISMAKGAGATAEIGLVYYLSFMALISVNLGVMNLFPLLPLDGGQL
                     VLLAVEAIRGKALSEKIQLKFQQIGFAFVLSLMLFAFANDIIHF"
     gene            7115..9496
                     /gene="bamA"
                     /locus_tag="PXE26_000654"
     CDS             7115..9496
                     /gene="bamA"
                     /locus_tag="PXE26_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HDL5593264.1"
                     /translation="MKKLLLSSLLIANGVVAAPFVVKDIRVEGVQPTTGESIISSIPV
                     RVGQTATDTDVSNVVRHLFSQQRFADVRATREGNTLVIKVAEKPIIGKVEIEGNQAIP
                     KDALEQNLKANLINQGEIFDAAKLEAFKEGLIEHYHSTGRYEAKIDTSVSNNTEGGVN
                     IKLAINEGEVAKAKTIKFEGNNAFSDKKLLENLDIQPDVSWWNIFESSKFEQTAYQKD
                     LETLRDFYLNRGYAKFAIQDTDVQFNDNKTEVALTYKLDEGSQYHVSEMRIIGNTANM
                     DSQLNALLKEFKPGQLFRKSDLTQIEEEIKSILGDAGYGSAKVDIYPQFNEENKTVKI
                     SFVVDAGRRIYVRKIRFEGNGVTADSTLRREMRQQEGAWLSTNKASLGKARLERTGFY
                     ESVDMSMPNVEGTADQVDVVYKIKERNTGSINFGIGYGTKNGISYQAGIKQDNFLGMG
                     STISLNGTRNNYGTSVNLGYTEPYFTKDGVSLGGNIFYEDYDNSDNDSMASYKRQTYG
                     INGTLGFPVNENNSYYLGLGYTHDKIKNAAREYTREKYVKSMNFEFDPAADYYKKIKA
                     DDFDFSLGWNYNSLNRGYFPTEGTTANIGGKITIPGSDNKYYRVSADFRNYYPLNREH
                     KWVISTKASIAYTNGFGGKEVPFYQLYTAGGIGTLRGFSYGAVGPQAIYYNTKSGKFD
                     SMNNDIIGGNALAAASLELITPTPFVSEKYQHNVRTSLFVDAASAWNTKWKKDEYTNL
                     PDYGDFKRFRASAGIAFQWMSPIGPLSFSYAKPIRKYDNDDIEQFQFNIGSSF"
     gene            9576..10367
                     /locus_tag="PXE26_000655"
     CDS             9576..10367
                     /locus_tag="PXE26_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HDL5593265.1"
                     /translation="MKKLFKMTGLAVALASTTGIANAADTIGFVDPSYVLQNHPVLLD
                     ASAKFDKFMKESQEKFAADEKKLADENKTLTAERNKINEDAQKLQNEQKNVEASIKKK
                     VAALEKDAPRLRSKEIQARQNAIQKEANAFQAKVTAIQKREADFAKKAEAFQKRADEF
                     QKRIEQANKENGGINPQEAQKQAVDEVNATIKEIAKSKGYTLVLQPQVALYAEDEGKD
                     ITEAVLDAIVKKHPEIKIEKPATEAQPATEKETKAEETKPEEAKK"
     gene            10367..11392
                     /gene="lpxD"
                     /locus_tag="PXE26_000656"
     CDS             10367..11392
                     /gene="lpxD"
                     /locus_tag="PXE26_000656"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HDL5593266.1"
                     /translation="MANFRLIDLAEHIGGTLRGNADLAIQSIAALDKADSSQITFISN
                     AKYRENLTACNAGAIIVSPADVEFCRADQNLIIVANPYVAYAQLAQYMDSTPKAASEI
                     HPSAVISPEAKLGNNVSVGANAVIESGVELGDDAVIGAGCFVGKNSKIGARTQLWANV
                     SVYHNVQIGADCLIQSSTVIGSDGFGYANDKGQWIKIPQTGGVIIGNRVEIGACTCID
                     RGALDPTVIEDNVIIDNLCQIAHNVHIGFGTAVAGGVIMAGSLKVGRFCQIGGASVIN
                     GHMEICDGAIITGMGMVMRPITEKGIYSSGIPLQTNKEWRKTAALVMNIDEMNKRLKS
                     LEKRFND"
     gene            11421..11879
                     /gene="fabZ"
                     /locus_tag="PXE26_000657"
     CDS             11421..11879
                     /gene="fabZ"
                     /locus_tag="PXE26_000657"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HDL5593267.1"
                     /translation="MTTENREPNIIEVTEIMDMLPHRYPFLLVDRVTDYEEGKWLKAI
                     KNVTFNEPCFTGHFPGAPIFPGVLILEAMAQATGVLAVATYGKLSEDELYYFAAIDNA
                     RFKRPVVPGDQLQLEVEFLKEVRGITKFTGKAYVDGKLVCEADLMCARRK"
     gene            11913..12707
                     /gene="lpxA"
                     /locus_tag="PXE26_000658"
     CDS             11913..12707
                     /gene="lpxA"
                     /locus_tag="PXE26_000658"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HDL5593268.1"
                     /translation="MRLIDSTAKISPLAIIEEGAEIGAHVEIGPFSVIGKDVKIGART
                     KIHSNVVINGMTEIGEDNHIFQFASIGEINQDLKYQGEPTKVVIGNRNRIRESVTIHR
                     GTVQGGGVTKIGDDNLFMINTHIAHDCSIGNRCIIANNGTLAGHVTLDDFVIVGGMSA
                     IHQFVVIGSHVMLGGGSMVSQDVPPYVMAQGNHARPFGINFEGLKRRGFDKPTMHAIR
                     KVYKLIYSSGKTLEECLVEIEQIAATEPAIAIFKQFFKRSTRGIIR"
     gene            complement(12745..14745)
                     /gene="mnmC"
                     /locus_tag="PXE26_000659"
     CDS             complement(12745..14745)
                     /gene="mnmC"
                     /locus_tag="PXE26_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HDL5593269.1"
                     /translation="MGKLTFATLTFNDADTPVSEQFDDIYFSTQDGLAESYYVFQEGN
                     QLWEKWQSHPKEAFVIAETGFGTGLNFLAVADKFQQFRAAFPQSKLKRLYFISFEKFP
                     LTASQLADIHQRYPQFATLSENLTACWQPRQIGCQRYHFEQVYLDLWFGEIAENLPQL
                     GDLYSGTIDAWFLDGFSPDKNPEMWNEQLYLQMFRLSANGGSFATFTASSMVRRGLEA
                     AGFAVKKRKGFGKKREMLWGEKPLDSQVSEPNYPYFYAKNETADDIAIIGGGVASFFV
                     ALSLLEKGKQVTLYCKDETLAINASGNLQGAIYPQLSDDDERNVQFYIHSFDYALQRL
                     QQLKSNIEFEHNLSGVVLYAYDEKTAKKLEKMVEQTADDTLLKSCSQAELSEKLGLSV
                     PNSGAFIPQAGWLSPVQLVRNGFTWLEQKGLKIVLNHKVEHLTFSNGMWQWQTRGETV
                     RHQAVVLANGHTLNEFSQANGIPLYPVRGQVSQIPTTSELQKLKCVLCYDGYLTPMSA
                     YGTHCIGASHIRDNAETEFSLSEHWENVAKLQQNVTVCEWTQGIDLSENKAKVGIRAA
                     FRDRVPMVGAVHHFEQQKSQYANLYNQLRRKQAVENAEIFTNLYMVNGLSSRGLTTAP
                     LLGELLASLIVNEPVPISEDIWHNLSPNRAWIRKLLKGSTVA"
     gene            complement(14970..16406)
                     /gene="trpCF"
                     /locus_tag="PXE26_000660"
     CDS             complement(14970..16406)
                     /gene="trpCF"
                     /locus_tag="PXE26_000660"
                     /EC_number="4.1.1.48"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional indole-3-glycerol-phosphate
                     synthase TrpC/phosphoribosylanthranilate isomerase TrpF"
                     /protein_id="HDL5593270.1"
                     /translation="MQNIVQDNAQPNQPTILQKIVQDKAIWVAQKEQAFPLSEFQHKI
                     VKSDHDFYAALAKGTHQEPAYILECKKASPSKGLIRAEFDLDSIAQVYKNYAAAISVL
                     TDEQYFQGDFRYIDQVKRQTTQPILCKDFMISAYQVYLARFYNADAILLMLSVVNDET
                     YRELATLAHELGMGVLTETSTEAEFERALALGAKVIGVNNRDLHTLTIDMNRIVRLVE
                     KYQAQISADVCLISESGINDHQQVKNIKPYVHAFLIGSSLMGSADLNNAVRAVIFGEN
                     KVCGLTRVQDVKAVYEQGALYGGLIFAEGSPRQLSLRQAQELVVNAPLRYVGVFQNQA
                     VEFVEKMAKQLELFAVQLHGSEDEQYIAELAEKLGSKTQIWKALSVDVEVENLEFNDN
                     PQIARYVLDSKVGNQQGGTGKTFNWALIPETLKQKALLAGGIGTENIEQALAQGCVGL
                     DLNSGVESAKGVKDLQKLTACFGKIIQA"
     gene            16494..16805
                     /locus_tag="PXE26_000661"
     CDS             16494..16805
                     /locus_tag="PXE26_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqcC family protein"
                     /protein_id="HDL5593271.1"
                     /translation="MKSQVIQHLSYLEIALRVNQLWEATPPSPEALANEQPFCVETLT
                     PTQWLQWIFIPRMRAILDANADLPRNFAITPYLEEALKNEGYLQAICEPLLGLEKLLK
                     D"
     gene            16959..17687
                     /gene="truC"
                     /locus_tag="PXE26_000662"
     CDS             16959..17687
                     /gene="truC"
                     /locus_tag="PXE26_000662"
                     /EC_number="5.4.99.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(65) synthase TruC"
                     /protein_id="HDL5593272.1"
                     /translation="MTLDILYQDNSLIAINKPAGVLVHRSWLDKHETVFAMQTLRDQI
                     GQHVFPIHRLDRPTSGVLLFALNSETARIMSEQFEQHLVQKTYLAVVRGYLQGSAQID
                     YPLKVILDKIADKFSQEKEAQAAITDYKGLATVEMPYPVGKHQTSRYSLVELSPKTGR
                     KHQLRRHLKHLFHPIMGDSKYGDLHQNRALVEKSGVSRLMLHAHKLQFQHPKNLQKIE
                     IIASLDEQWQRLFAFFDWNFTQYY"
     gene            17705..17869
                     /locus_tag="PXE26_000663"
     CDS             17705..17869
                     /locus_tag="PXE26_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaH family protein"
                     /protein_id="HDL5593273.1"
                     /translation="MDNSLLSLTHEQQQAAVEEIQKLMAQGISAGEAIQIIANQLRDK
                     YQILEKSNNE"
     gene            17862..18338
                     /locus_tag="PXE26_000664"
     CDS             17862..18338
                     /locus_tag="PXE26_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593274.1"
                     /translation="MNKLWTVLALTITSHYSFAAAEKIVTKDLPAEGKPAVVLQVFDE
                     SEKIAKPIKGNKLFISKKQTRLCWHSINLPVQNKVTIAEAFYAPAAMKLASPGSKINS
                     SADKKNHTIITEINLANNQVLNRCWGFDKTDPVGKYKMEIQINDHIFKGLEFEIVK"
     gene            complement(18375..19226)
                     /locus_tag="PXE26_000665"
     CDS             complement(18375..19226)
                     /locus_tag="PXE26_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HDL5593275.1"
                     /translation="MENQKQAEIELKIMLEQQNVALVENYLNQTSPFPVLAHQTELLG
                     NTYYDTPEQFFATQKMGLRVRSVNQQYEITLKTQGEIVGGLHIRPEYNLALPNSQPDF
                     QTLVEKYQLPFENSEQIAESLQAIFSTDFTRKTWLVQVGMSDIEVALDQGIIKNHFGE
                     EPICELEFEIKQGNLGDLFTLVEAMPKADGMWLSNLSKAQRGYLLGQAVKWEQKIATA
                     MDGENSEKLTQLLADFICVGNESLEVLVRFNQCTQQQFSNWQQARAFVKSKDYLLHNL
                     TNLKTMI"
     gene            19287..20696
                     /locus_tag="PXE26_000666"
     CDS             19287..20696
                     /locus_tag="PXE26_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcjX family protein"
                     /protein_id="HDL5593276.1"
                     /translation="MFSKIHHKLNNFVQRGLDNHLRLAVTGLSRSGKTAFITSLVDQL
                     LHINKGGNSHLNLFAPARHGQILSVKRVEQGDLTIPRFEYDKNRQSLENQPPQWPEST
                     TGISEIRLAIRYQRQHSLLRHIKETGTLYLDIFDYPGEWLLDLPLLSLSYKEWSQTQQ
                     TIHKDERAELATPWLQAVKKLDLFAKTDENLLAEFSQQYTDYLLACKAQGMQYIQPGR
                     FVLPTENAKGAPVFQFFPLLDLSEAEWEKLEQSDRNSIFHTLKKRYEHYQKKIVKPFY
                     EDYFSQFDRQVILADCLTPLNYGYNEFMEMKLGLQQLFKHFHYGNRSLFHRLFSSNID
                     KLLFIATKADHITSDQVPNLESLMRQLVQEGGRHAEFDGIETGYLAISSIQATDAVKV
                     TQQDKIIKAIRGIRSSDRKQVTLYPGSVPNRIPDKNYWQFNRFEFDQFEPKQLDYSQA
                     IPHFRMDSVLQFLLADMFE"
     gene            20742..21092
                     /locus_tag="PXE26_000667"
     CDS             20742..21092
                     /locus_tag="PXE26_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5593277.1"
                     /translation="MNTVISQRKPIHWVGSTLDDIREFPDNIKRELGFDLDLVQQGLL
                     PRDFKAMANLGSGVMEIRVKDPSGAFRLVYLAKFKDAIYCLHAFQKKTQKTAPKDIAV
                     IKARYAAVKELENE"
     gene            21085..21408
                     /locus_tag="PXE26_000668"
     CDS             21085..21408
                     /locus_tag="PXE26_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL5593278.1"
                     /translation="MNNIDTKIRHTTEAQGNVFEDLGFPIDEAQKLKSASQQLIETKL
                     MLMNEMSNWIDKNNLKQSEAASILGVSRPRISDMVNGKLEKFTLDTLVTFVAKTGKTI
                     QLQLS"
     gene            21516..21995
                     /gene="smpB"
                     /locus_tag="PXE26_000669"
     CDS             21516..21995
                     /gene="smpB"
                     /locus_tag="PXE26_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HDL5593279.1"
                     /translation="MAKKPKVASNTIALNKRARHEYFIEDEIEAGLELQGWEVKALRA
                     GKGNISDSYVIFRHGEAFLFGAMITPLNMASTHIVSDPTRTRKLLLNKRELDSLFGKV
                     NREGYTIVATSMYWKNAWVKVKIGLAKGKKLHDKREDIKDREWQVAKQRIMKNANRG"
     gene            22198..23505
                     /gene="serS"
                     /locus_tag="PXE26_000670"
     CDS             22198..23505
                     /gene="serS"
                     /locus_tag="PXE26_000670"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HDL5593280.1"
                     /translation="MIDQNLLRTNLEDVATALKIKRNFILDVERVKTLEEQRKTLQVK
                     TETLQAERNTRSKNIGAAKARGEDISALLAEVDSMGNELDTAKVELDKVQAEIRELLL
                     SVPNLPADEVPLGKDDSENLEVLRWGEPRQFDFEVQDHVTLGENLNGLDFAAGVKLTA
                     SRFVVMKGKLARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLYGTGQLPKFGEDL
                     FHTQPLTGQDPNEVQRPFGLIPTAEVPVTNLVRDEIIDEDSLPLRYTAHTPCFRAEAG
                     SYGRDTRGLIRMHQFEKVEMVQIVAPEKSMEALEELTGHAEKVLQLLGLPYRKVLLCT
                     GDMGFGAAKTYDLEVWLPAQNTYREISSCSNMWDFQARRMSARCKAKGDKKTRLVHTL
                     NGSGLAVGRTLVAVLENYQNADGSITVPEVLRPYMGGLEVITA"
BASE COUNT         7400 a         4773 c         4680 g         6749 t
ORIGIN      
        1 atttgcaaaa aattctaaaa atcttaccgc ttgttactta aacaggcgat ggatagtgct
       61 aaatgtattc gaaaaattga tataaaacaa acaaatgcgt attttaaagc gattttttta
      121 aactaaatgt caaaaatttg aagtatgtaa cattttttat ttttcaattt tcgtataatc
      181 aacccagttt taaatttata actattatga ggtaaccact atgttaaatc gtattgaaca
      241 agaacttgca gacttaggca ttacaaatgt aaaagaaatc gtgcgtaacc ctagctatga
      301 gcaactgttt gaagaagaga tgaaatcgga tcttaaaggt tatgaaaaag gcgtcctaac
      361 aaatttaggc gcagtagcgg tagataccgg cattttcacg gggcgttcgc cgaaagataa
      421 atatatcgta ttagatgaaa cgacaaaaga taccgtctgg tggacatctg atgcagctaa
      481 aaatgataat aaaccgatga ctcaatctac ttggcaaagt ttaaaaacct tagtgaccga
      541 tgagttatct aataagcgtt tatttattat tgatgctttc tgtggtgcaa gccctgagca
      601 tcgcatcaat gtgcgtatta ttacccaagt tgcgtggcaa gctcactttg tgaaaaatat
      661 gtttattcgt ccaacagaag aagaattaaa agatttcaaa ccggattttg tggtaatgaa
      721 cggttcccaa gtaactaacc cgaactggaa agagcaaggc ttaaattcag aaaactttgt
      781 ggcatttaat atcacagaag gtgttcagat cattggcggt acttggtacg gtggtgagat
      841 gaaaaaaggt atgttctcta tgatgaacta cttcttacca ttaaaaggtg tcgcttcaat
      901 gcactgttca gccaatgtgg gcgaagaagg tgatgtggcg gttttctttg gtttatcagg
      961 aaccggtaaa acgacactat caaccgatcc gaaacgcaaa ttgattggtg acgatgaaca
     1021 cggttgggac gaaaacggcg tatttaacta tgaaggtggt tgctatgcga aaaccatcaa
     1081 cctttctatt gaaaacgagc cggatattta tcgtgcaatc cgccgtgatg cgttattaga
     1141 aaacgtggtt gtgcgtgaag atggcactat tgattttgat gataaatcaa aaacagaaaa
     1201 tacccgtgtg agctatccga tttatcatat tgataatatt gccgtgccgt caaaagcagg
     1261 acacgctaaa aaagtgattt tcttaacggc agatgcattc ggcgtattgc caccggtgtc
     1321 taaattaacg cctgaacaaa ctaaatacta cttcttatca ggctttaccg caaaattagc
     1381 aggtacagag cgtggtatta ctgagccaac cccaactttc tctgcttgtt tcggtgcggc
     1441 gttcttatca ctccacccga cacaatatgc tgaagtgtta gtgaaacgta tggaagcagc
     1501 cggtgcggaa gcctatttag tgaataccgg ttggaacggc acaggtaaac gtatttcgat
     1561 taaagataca cggggtatta ttgatgccat cttagacggc tcaattgaga aagcggaaat
     1621 gagtacatta ccaatcttca atttagcaat tccaactgcg ttaccgggtg tagaaaccca
     1681 cattttagac cctcgtaaca cttatgaaga caaagcacaa tggcaagcta aagcagaaga
     1741 tttagctggc agatttgtga aaaactttga aaaatatgcg accaacgagg aaggcaaagc
     1801 attaattgct gctggtccga agttataagt tgtaattata agttataatc gctaaaaaat
     1861 tagtttagga ctaaaccttg aatgaggttt agtccttttg tataaaggag aagtacaata
     1921 atgacaacat tccaattaag gctgaaagcc aaagatgagc ttaccccaca cccaacagca
     1981 caatattggc gaaaatgcca agtggaagga ctatttgatc tgccgtttat ggatttagtg
     2041 tttagagcgg cacaagttca ccgtgaaaat tttgatgcta atgcgatcca gctttcaacg
     2101 ttactctcaa ttaaaacagg aggctgtccg gaagattgcg aatattgccc ccaatctgcc
     2161 cgctatgata cgggaataga aaagcaaaca atgcttgatg tagagacgat tgtagaaaaa
     2221 gctaaaattg ccaaagagcg tggagcaagc cgcttttgta tgggggctgc gtggcgagga
     2281 cctaggccta aagatattaa agtagtctca gaaatcatca atgcggtgaa atcattgggg
     2341 ctagaaacct gtggtacttt cggtatgctt gaagagggaa tggcagaaga attaaagcaa
     2401 gcagggctgg attactacaa ccataattta gataccgacc ctgaacgcta taacaaaatt
     2461 atccataccc gaaatcacga agatcgaatg gacactttag gtaaagttcg caatgccggc
     2521 ttgaaagttt gctgtggcgg tattgtggga atgaacgaaa cccgccccga gcgagcaggc
     2581 ctaattgcaa gcctcgctaa cctcgatcct caacctgaaa gcgtaccgat taatcagttg
     2641 attaaagtag aaggtacacc gcttaccaat gccgaagatt tagactggac agaatttgtt
     2701 cgtaccattg cggtagcaag aattactatg cctcaaagct ttgtccgact ttctgctggc
     2761 agaactacta tgccggaggc aatgcaagcc ctctgtttta tggcaggagc aaattctatt
     2821 ttctatggcg ataaattact tactacagaa aatccggaag aagatcatga tcgccaatta
     2881 atggataaat tagatttata tccgctacaa tatatagcct gagtgccaat gattttcgcc
     2941 tgaatgaaaa ttaaagaatc aatcgttatt ttacgcaaat ttctaacata aaataaccgc
     3001 ttgcaaaatt cgttcttgtc ttatttttaa atttatctat aatgtgaggc cttacgcaag
     3061 cttgcgtaat tcgatggggc gttattggtt cctcgcaatg gtgttcagct tacttgatca
     3121 ggttcggaag aaagcagtct gggttgaaat ttccgtgtgc cgagggaggc tggtaatgcc
     3181 ccaccctttt ttcagttcta tcaggagaac gttatgctcc agatcacccc cattccggca
     3241 ttaaaagata attacatttg ggcaatccgt aacgggcaag atgtgattat tattgatcca
     3301 tcagaacatc agccagcatt aaactttatt gcaaaaaatg cgttaaattt aaccgctatc
     3361 ttgattaccc ataatcacca cgaccatact gatggggtga gtggtattgt tgagcaatat
     3421 ccgaatatcc ctgtttatgg tccgcaagaa gtggctgaat ttgccaatgt gattgtctcg
     3481 cctgaacaac atatcagcct gtttggttat gatgtaagga ttattgaaag tggtgggcat
     3541 accgcagggc atatcagtta tttatttggc tatgattatc tgttttgtgg cgatgcgtta
     3601 ttctccggcg gttgcgggcg ggttttcacc ggtgattacc aagcccaatt tgatgcgtta
     3661 caacgcttta aaaatctgcc taactcggtt aaagcctacc cggctcacga atacaccaag
     3721 agcaatttga aatttgcaga agcggttcta ccaccaagct gtgtattatc ggaatatcaa
     3781 gaacaggttg atcttttacg ttcgcaaaac aaaccgactt tgccaaccac tattggcttg
     3841 gaaatgcagg tgaacccgtt tatgcaagcg gtcgatttag ccgaatttat tgcacttcgt
     3901 cagcaaaaag acaattttta acctcatatt tctaattaag cattaaagcc tctcacttta
     3961 atgctttttg gttaaataaa acctttgcaa acatcgcttg tcaattccac tctggcttat
     4021 cctatggtat agttacgact atttttagct taatttatta ttttagtgag taaaattctg
     4081 tgaacttcga tcctcaaaat atgcctaagc acgttgccat tattatggat ggcaatggca
     4141 gatgggctaa gcagaaagga aaattacgca tttttggtca tcagaatggt gtaaaggcag
     4201 ttcgttctgc agttagtttt gcagcaaagc atcatatcca agttttaacc ctctacgcat
     4261 ttagcagtga gaattggagc agaccagaaa ctgaagtttc agctttaatg tctctgttta
     4321 tgaaagcttt agattctgaa gttaaacaat tacataaaaa taatattcgc ttaaagatta
     4381 taggcgataa atccgccttt agcgaaaatt tacaaaaacg cattgccgaa tcggaaaaat
     4441 taaccgaaaa caatactggg ctaatcttaa acattgctgc caactatggt ggttactggg
     4501 atattgttca agctgctcaa caactagcag tgcacgttaa atctgaacaa cttgctgtgg
     4561 agcagattac accagcattg tttcaacaac atttagtgac agaaaaccag ccgcaagtgg
     4621 atttattaat tcgaaccagt ggtgagcagc ggatcagcaa ttttctatta tggcaaattg
     4681 cttatgccga gctgtttttt agcccggttt tatggcctga ttttaatgat gaggctttta
     4741 gtgatgcaat ttatgcttat cagcaacgtg aacgccgatt cggtggttgt taatataaaa
     4801 agaataagga aatacaatgc ttaaagaacg tgtactttca gcgattatta tgattattgc
     4861 cgtgctggct gccatatttt ggctctcacc acttccttta actttagtgt tatcggcaat
     4921 tgttgtggct gcaatgtggg aatgggctca atttgccggc tttaaacacc ctgtgccacg
     4981 tgcaattgtg gcaatggtga caatctgctt attacttttt gcgatcgttg cgaatactga
     5041 ttatatccga gccacccgtt ttattactga tgagactacc cctatcctct ttattggctg
     5101 tatttggtgg ttaattgccc ttgtcctagt ggcaacttac cccaactcgg caaaactgtg
     5161 ggaaaaatct gttgcagcta aattcctatt tggacttgct accttagtgc cgtttttaat
     5221 tggcacgctc gcattgcgtt tccataatta tgcatttgat ccataccaag gaacttattt
     5281 attcctttac gtctgtttat tagtttgggg agctgattca ggtgcttatt ttgctggcag
     5341 agcctttggc aaaagaaaac ttgccccaaa agtatctccg ggtaaatcgt gggaaggcgt
     5401 aattggtggc gtactcacct ctagtttgat tgcctttacc tttttacaac ttacaccggc
     5461 aaatgtattc ggcaaagcat tagccactac cccatttatt ttagtttcgg tcggtatggt
     5521 tgctatttca gtcttaggcg atttggcaga aagtatgttt aaacgccaag caggcattaa
     5581 agacagtagc cagttaattc ctgggcatgg aggtatttta gatcgtattg atagtttaac
     5641 cgctgccgtt ccgttttttg ctacattctt cttttttgta ctatagaata tgacgtccat
     5701 cattgcattt tttattttaa tttgcgtact ggtttttgtg catgaatacg ggcacttttg
     5761 ggctgctcgc aaatgcgggg taaaggtgat ccgtttttcg atcggatttg gtaaagtctt
     5821 atttaagaaa aaagataaac aaggaaccga atttgttttt tcacttattc ctctgggcgg
     5881 ctatgtacaa atgtggaatg atgaaacgga tatcaacgct ccagctcaac aagctcttaa
     5941 cacaaaatct gtattgcaac gtgcatttat tattatagcc ggtcctgctg caaattttat
     6001 ttttgcgatt ttggcatact gggtcgtttt tattgccggt attccaactg ttaaacctgt
     6061 tattggggaa attttaccaa acactatcgc ctcccaagca agaattccta ccgaattgga
     6121 aattacaaaa atcggtcatc aatctatcca agattgggaa agtgcatctt tagcactagt
     6181 tggttttgtg ggcaataaaa atgtaccgtt agagggaaat atcaacggca actcaacaca
     6241 aaaatatgaa ctcgatttat ctaactggag tattgactca gccaaagaaa acccattaac
     6301 cgcattaggt attcgcccca aaagtgcaaa agtcaccgct gaaattaaac aagttgtcga
     6361 aaattctcct gcaagccaag tgggtattca agcaggtgat cgtattcttc aaattaacca
     6421 gcagccattt aattggttca atttagttga actggtacaa gcaggtaaac ctattgaact
     6481 taaaattgaa caacgaggtc agattaaaga ccttgtcgtc caaccagaaa aaaaagacga
     6541 acgctatatt atcggggtaa taccaagtta tgagcctctt gcagataaat atcgtaccga
     6601 attaaaatat gatattctta ccgcatttta taaaagtatc gaaaaagtgt ggtctcttac
     6661 ccaaaccata ctccaattta tcggtaattt aataagcggt gatttgtcca ttaaaaattt
     6721 aggtgggcca atttcaatgg caaaaggagc cggtgcaaca gctgaaatcg gcttagttta
     6781 ttaccttagt tttatggctc taatcagtgt caatttgggg gtaatgaact tatttccact
     6841 tttaccctta gatggtgggc aacttgtttt attggctgtt gaagcaattc gtggaaaagc
     6901 attatcagaa aaaatacaac tcaaattcca acaaattgga tttgcattcg tgctgagttt
     6961 aatgttattc gcctttgcca acgatataat tcacttttaa caagcggtta aaaaaggtga
     7021 cttttttgca aaaagcaccc tgacatcaaa atccataata tggatttaaa ctatattctt
     7081 aataattttg caaaacgatc ataggataat ttcaatgaaa aaattattac tttcctctct
     7141 tttaattgca aacggtgtag ttgctgcacc tttcgtagta aaagacattc gtgttgaagg
     7201 tgtgcaacct acaacaggcg aatctatcat ttcatctatt ccggttagag taggtcaaac
     7261 agcaacggat actgacgtat ctaatgtcgt ccgccatcta ttcagccaac aacgttttgc
     7321 agatgttcgt gcaacacgag aaggcaatac gcttgtcatc aaagtcgctg aaaaaccgat
     7381 tattggcaag gtagagatcg aaggtaacca agcgattcct aaagatgcct tagagcaaaa
     7441 tttaaaggca aacttaatta accaaggtga aatttttgat gctgccaagc ttgaagcttt
     7501 taaagaagga ctaatcgaac attatcactc taccggccgt tatgaagcca aaattgacac
     7561 atctgtttcg aataacaccg aaggtggcgt taatattaag ttagcgatta atgaaggtga
     7621 agttgctaaa gccaaaacaa ttaagtttga aggtaataat gccttctctg ataaaaaatt
     7681 attagaaaac ttagatattc aacctgatgt ttcttggtgg aatatttttg aaagtagcaa
     7741 attcgaacaa accgcctatc aaaaagactt agaaacatta agagattttt atttaaatcg
     7801 tggctatgca aaatttgcta tccaagatac cgatgttcaa ttcaatgata ataaaacgga
     7861 agttgcattg acctataaat tagatgaagg gtcacagtac catgtcagtg aaatgcgcat
     7921 tatcggtaat acagccaata tggatagcca gctcaacgcc ctactaaaag aattcaagcc
     7981 tggtcaatta ttccgtaaat cagaccttac acaaattgaa gaagagatta aatctatttt
     8041 aggggacgca ggttatggtt cagctaaagt agatatttat cctcaattta atgaagaaaa
     8101 taaaaccgta aaaatcagtt ttgttgtgga tgccggtcgt cgtatttatg ttcgtaaaat
     8161 ccgttttgaa ggtaatggtg tcactgcaga ttcaacatta cgtcgtgaaa tgcgccaaca
     8221 agaaggtgct tggctttcca caaacaaagc ttctctaggt aaagctcgtt tagaaagaac
     8281 cggtttctat gaaagtgttg atatgtcaat gccaaatgta gaaggtacag ccgatcaagt
     8341 tgatgtagtg tataaaatta aagaacgcaa taccggtagt attaactttg gtatcgggta
     8401 cggcacgaaa aacggtatca gctatcaagc aggaattaaa caagataatt tcttaggtat
     8461 ggggtcaact atcagtctaa atggtacccg taataactac ggtaccagcg ttaacctagg
     8521 ctataccgaa ccttacttta ctaaagatgg tgtaagttta ggcggtaata ttttctatga
     8581 agattatgat aactcagaca atgattcaat ggcttcatat aaacgccaaa cctatggtat
     8641 taacggcaca ttaggcttcc cggtaaatga aaataactca tactacttag gtttaggcta
     8701 tacgcacgat aaaattaaaa atgcagcacg tgagtacact cgtgagaaat atgtaaaatc
     8761 aatgaacttt gagttcgatc cagctgccga ttattacaaa aaaatcaaag ctgatgattt
     8821 tgatttttct ctcggttgga actacaacag cttgaataga ggctatttcc cgactgaagg
     8881 aactaccgca aacattggcg gtaaaatcac aattccaggc tctgataata aatattaccg
     8941 agtcagtgca gactttagaa attattaccc gttaaaccgt gagcacaaat gggtaatttc
     9001 aacgaaagct agcattgctt atactaatgg atttggtggt aaagaagttc cgttctatca
     9061 gctttatact gccggaggta ttggtacact aagaggtttc tcttacggtg cagtagggcc
     9121 tcaagcgatt tactataata caaaatccgg caaatttgat agcatgaata atgatattat
     9181 cggtggtaat gcgttagctg cggcaagctt ggaattaatc acaccaacgc catttgtgag
     9241 cgaaaaatat cagcacaatg taagaacctc tctctttgtt gatgctgcaa gtgcatggaa
     9301 tacaaaatgg aagaaagatg aatatacgaa cttgcctgac tatggtgatt tcaaacgttt
     9361 ccgtgcttcc gccggtattg cattccaatg gatgtctcca atcgggccat tatcattctc
     9421 ttatgcgaaa ccaattcgta aatatgataa tgatgatatt gaacaattcc agttcaacat
     9481 tggtagttca ttctaattaa ccacaagcgg ttaataaatg taaaaaattt gcaacttagc
     9541 cgcttatttc aaaactgttc atacaaggaa aacaaatgaa aaaattattt aaaatgactg
     9601 gcttagccgt agctttagcc tctacaaccg gaatcgcgaa tgctgcagat actattggtt
     9661 tcgtagatcc aagctatgta ttacaaaacc accctgtatt attagatgct tcggcaaaat
     9721 ttgataaatt catgaaagaa agccaagaaa aatttgctgc tgatgaaaaa aaattagcag
     9781 atgaaaataa aaccttaacg gctgagcgca ataaaattaa tgaagatgcg caaaaattac
     9841 aaaatgaaca aaaaaatgta gaagcttcta tcaagaaaaa agtggcagca ttagagaaag
     9901 atgcgcctcg cttacgttca aaagagattc aagcacgtca aaatgcgatt caaaaagaag
     9961 caaacgcatt ccaagctaaa gtaacagcaa ttcaaaaacg tgaagctgat tttgcaaaaa
    10021 aagcagaagc cttccagaaa cgtgcagatg aattccaaaa acgtattgaa caagcgaata
    10081 aagaaaatgg tggcattaac ccacaagaag cgcaaaaaca agcggttgat gaagtaaatg
    10141 caaccattaa agagatcgca aaatcgaaag gttacacttt agtattacaa ccacaagtag
    10201 cactttatgc tgaagatgaa ggtaaagata ttactgaagc agtacttgat gctattgtta
    10261 aaaaacatcc ggaaattaaa atagaaaaac ctgcaactga agctcaacca gctacagaaa
    10321 aagaaaccaa agctgaagaa actaaaccag aagaagcgaa aaaataatgg caaatttccg
    10381 tttaattgat ttagcggagc atatcggcgg tactcttagg ggtaacgccg atttggctat
    10441 tcaaagtatt gctgctttag ataaagccga cagctcgcaa attaccttta tctcaaatgc
    10501 aaaatatcgg gaaaatttga ccgcttgcaa tgctggagct attatcgtca gcccggcaga
    10561 tgtagaattt tgccgagcag atcaaaatct tatcatcgtt gccaatccgt atgttgctta
    10621 tgctcaactg gctcaatata tggattctac tccgaaagca gcgagcgaaa tccacccaag
    10681 tgcggtgatt tcacctgaag ctaaactggg taataacgta tcggtagggg caaatgccgt
    10741 gattgaaagt ggcgtagaat tgggcgatga tgccgtgatc ggtgcaggct gttttgtggg
    10801 aaaaaacagt aaaatcgggg caagaaccca actttgggca aatgtttcgg tgtaccacaa
    10861 tgtacaaatc ggagctgatt gcttgattca atcctcaacg gttatcggga gtgatgggtt
    10921 tggctatgcg aatgacaaag ggcaatggat taaaatccca caaaccggtg gtgtgattat
    10981 cggtaatcgt gttgaaattg gtgcttgcac ttgtattgac cgaggtgcat tagatccaac
    11041 cgtaatcgaa gataatgtga ttattgataa cctttgccaa atcgcccata atgtacacat
    11101 tggttttggc actgccgttg ccggcggcgt cattatggca ggcagtctaa aagttggtcg
    11161 cttttgccaa attggtggag caagtgttat caacggtcat atggaaatct gtgatggtgc
    11221 cataattacc ggaatgggta tggttatgcg cccaattaca gaaaaaggaa tttactcatc
    11281 aggtattcca ttacaaacca ataaagaatg gcgaaaaacc gcagcacttg taatgaatat
    11341 tgatgaaatg aacaaacgct taaaatcgtt agaaaaacgt tttaacgatt aattttatta
    11401 gaggtcttaa agtgacagaa atgacaactg aaaatcgtga gccaaatatt attgaagtaa
    11461 ccgaaattat ggatatgtta ccgcatcgct accctttcct gttagttgat cgcgtaaccg
    11521 attatgaaga agggaaatgg ttaaaagcca ttaaaaatgt aaccttcaat gaaccttgtt
    11581 ttaccgggca ttttcctggc gcaccaatct tcccaggagt attgattctg gaagcaatgg
    11641 ctcaagcaac tggcgtatta gccgttgcca cttatggtaa gttaagtgaa gacgaactct
    11701 actattttgc cgcaattgac aatgctcgct ttaagcgacc ggttgtgccg ggcgatcaac
    11761 ttcaacttga ggttgaattt cttaaagaag tacgtggtat tactaaattt accggtaaag
    11821 catacgttga tggcaaatta gtctgtgaag cagatttaat gtgcgctcgc cgtaaataat
    11881 tcgatataag cccaaactag agggaacaaa ctatgcgtct aattgattca acagcaaaaa
    11941 ttagcccgct tgccatcatt gaagaaggtg ctgaaattgg cgctcacgtt gaaattggtc
    12001 cattttcagt catcggtaaa gatgtcaaaa tcggggctag aacgaaaatt cactcaaatg
    12061 ttgtcattaa cggcatgact gaaattggtg aagataacca tattttccaa tttgccagca
    12121 ttggtgaaat caaccaagat ctaaaatacc aaggtgaacc aaccaaagtg gtgatcggta
    12181 atcgtaaccg tattcgtgaa agtgttacta ttcaccgagg tacggtacaa ggcggtggcg
    12241 tgacgaaaat cggtgatgat aacttattta tgatcaacac ccacatcgca cacgactgct
    12301 ctatcggtaa ccgttgtatt atcgccaata atggtacgct agcaggtcac gttaccctag
    12361 atgatttcgt gattgtggga ggaatgtccg ccattcacca attcgttgtg attggttcac
    12421 acgttatgct tggaggcggt tcaatggtca gccaagacgt accgccttat gtcatggcac
    12481 aaggtaacca cgcacgccca tttggtatta actttgaagg gttaaaacgt cgtggctttg
    12541 ataaaccaac tatgcacgct attcgcaaag tctataaact gatttactcc agcggaaaaa
    12601 cattggaaga gtgcctagta gaaattgagc aaattgcagc aacagaacct gcgattgcta
    12661 tttttaaaca attcttcaaa cgttctaccc gtggtattat tcgttaataa acgaaacccc
    12721 gaaatcaatt cggggtttgt tttatcaagc gaccgtcgaa cctttcaaca attttcgaat
    12781 ccaagctcga tttgggctaa ggttatgcca aatatcctca ctgattggca caggctcatt
    12841 cacaatcagg cttgctaaca attcccctag aagtggtgca gtcgtcaaac ctcgagaaga
    12901 caggccgttt accatataca gattggtaaa aatttcagca ttttctaccg cttgtttccg
    12961 tctcaactgg ttgtataaat tggcatattg gcttttttgc tgctcaaaat gatgcactgc
    13021 cccaaccatc ggtacacgat cacgaaacgc cgcacgaata ccgactttgg ctttattttc
    13081 agataaatca attccttgcg tccactcaca aacggttaca ttttgctgaa gttttgcaac
    13141 attctcccaa tgctccgata aactaaactc ggtttctgca ttatcccgaa tatggcttgc
    13201 tccaatgcaa tgcgtgccat aggctgacat tggcgttaaa taaccatcat aacaaagcac
    13261 acacttcagt ttttgtaatt cgcttgtagt cggaatttgg ctcacttgcc ctcgtaccgg
    13321 atacaacgga atgccgttcg cttggctaaa ttcattcaac gtatgtccat ttgccagcac
    13381 aaccgcttga tgtcgaaccg tttctcccct cgtctgccat tgccacattc cattagaaaa
    13441 ggttaaatgc tcaactttgt gattcagtac aatcttcaac cctttctgct ccagccaagt
    13501 aaagccattt ctaacaagtt gtaccggtga aagccaacca gcttgcggaa taaatgcccc
    13561 gctgtttggc acgcttaaac ctaatttttc acttaattct gcctgtgaac aagattttaa
    13621 taaggtgtca tcagccgtct gctccaccat tttttccagt tttttagccg ttttctcgtc
    13681 ataggcgtaa agcactaccc cgcttaaatt atgctcaaac tcaatgttgg atttcagttg
    13741 ttgcaagcgt tgcaatgcat aatcaaaact atggatataa aactgtacat ttcgctcgtc
    13801 atcatcgctt aactgtgggt aaatcgcccc ttgtaaattt cctgaagcat ttattgccaa
    13861 ggtttcatct ttgcaataca gcgtgacttg cttgcctttt tctaacagcg ataacgcaac
    13921 gaagaaactc gctactccgc caccaataat tgcaatgtca tcagcggttt catttttggc
    13981 ataaaaatag gggtaattag gctcggaaac ttggctatct aacggtttct cgccccaaag
    14041 catttctcgt tttttgccaa atcctttgcg ttttttcact gcaaaacctg cggcttccag
    14101 ccctcgtctg accatacttg aagcggtaaa agtagcaaaa ctgccgccat tggcacttag
    14161 tcgaaacatt tgcagatata actgttcgtt ccacatttct gggtttttat caggcgaaaa
    14221 gccatctaaa aaccaagcgt caatcgtgcc gctataaaga tcgcctaatt ggggtaagtt
    14281 ttcagcaatc tcaccgaacc ataaatctaa ataaacctgc tcaaaatgat aacgttggca
    14341 acctatttgg cgaggctgcc aacaagcggt taaattttca gataatgttg caaattgcgg
    14401 atagcgttgg tgaatatcag ctaattggct ggccgtcaga ggaaatttct caaatgagat
    14461 aaaatagagt cgttttagtt tactttgcgg aaatgctgcc cgaaactgtt ggaatttgtc
    14521 agcaacggct aaaaaattca agcccgtgcc aaagccggtt tccgcaataa caaaagcctc
    14581 tttcgggtga gattgccact tttcccacag ttggttacct tcttgaaaca catagtaact
    14641 ttccgccaaa ccatcttggg tagaaaaata aatatcatca aattgctccg acaccggtgt
    14701 atctgcatca ttaaatgtaa gtgtcgcaaa agtcagttta cccatcatat ccccttaaaa
    14761 acaaaacacg gaaaacccca agattttccg tgtttcaacc agttcaatag taccaatgtt
    14821 agaaaatgtt gctggcaaaa ataacgatca taccaagtgc gcctacaacc gttagcattg
    14881 aataaccaaa agtacccatt ttacaatcct cattgttaat tatgattaaa acggctttat
    14941 tctagcataa tttccatcgc tttgaatgcc tatgcttgaa taattttgcc aaaacaagcg
    15001 gtcaattttt gtaaatcttt tacgcctttg gcactttcca cgccagaatt taaatctaac
    15061 ccgacacagc cttgagcaag ggcttgctca atattctcag tgccaatacc acctgccaat
    15121 aacgcttttt gttttaaggt ttctggaatc aacgcccaat taaaggtttt gcctgtgccg
    15181 ccttgctgat tgcctacttt gctgtctaat acataacgag caatctgtgg attatcgtta
    15241 aattctagat tttcaacctc aacatcaacc gataaggctt tccagatttg agttttacta
    15301 cctaatttct ctgccagttc tgcaatgtat tgctcatctt ccgagccgtg caattgaact
    15361 gcaaataact caagctgttt tgccattttt tccacaaatt cgaccgcttg attttggaac
    15421 acccccacat aacgcaacgg tgcattcacc accaattctt gggcttggcg aagtgaaagc
    15481 tggcgaggcg agccttcggc aaaaattaaa ccgccatata atgccccttg ctcataaacc
    15541 gctttcacat cttgcacacg ggttaagcca cacactttgt tttcaccaaa aatcaccgcc
    15601 cgcaccgcat tattgagatc ggcacttccc attaaactgc tgccgattaa aaaagcatga
    15661 acatacggct taatgttttt cacttgctgg tgatcgttaa tacccgattc tgaaatcaaa
    15721 cagacatcag ccgaaatttg ggcttggtat ttttccacca aacgcacaat gcggttcata
    15781 tcaatcgtga gcgtgtgcaa atcacggtta ttaacgccaa ttaccttcgc ccctaaggct
    15841 aaggcacgtt caaattccgc ctccgtgctg gtttcagtca aaacgcccat tcctaactcg
    15901 tgagccagtg tggcaagttc acggtaggtt tcatcattta ccaccgataa catcaataaa
    15961 atcgcatcag cattataaaa acgggcaagg taaacctggt atgccgaaat cataaaatct
    16021 ttacacaaaa tcggctgtgt ggtttggcgt ttgacttgat cgatataacg gaaatcgcct
    16081 tgaaaatatt gctcatcggt taaaaccgaa atcgccgcag cgtaattttt atacacttgg
    16141 gcaatactgt ctaaatcgaa ctcagcacga attaaccctt ttgacggtga agctttttta
    16201 cattctaaaa tataagctgg ttcttggtgt gtgcctttgg caagagccgc atagaaatca
    16261 tggtcgcttt ttacaatttt gtgctgaaat tcacttaacg gaaaggcttg ctctttttgt
    16321 gccacccaaa tggctttatc ttgtacgatc ttttgtaaaa tcgtcggttg gtttggttga
    16381 gcgttatctt gaacgatgtt ttgcatataa attcctagag cgaaatcggt ttgaatggta
    16441 aaatctgccc ttatttttac ccgaaaaagt ctcatttcac aagcaaaact aagatgaaat
    16501 cacaagttat acagcattta tcttatttag aaatcgccct gagagttaat caactttggg
    16561 aggcgacacc accaagccct gaagccttag ccaatgagca acctttctgc gtggaaacct
    16621 taaccccaac ccaatggcta caatggattt ttattcccag aatgcgggcc attttagatg
    16681 caaatgccga tttacctcgc aattttgcaa tcacccctta tttagaagag gcattgaaaa
    16741 acgaaggtta tttacaagcg atttgtgaac cgctattagg tttggaaaag ttgttgaaag
    16801 attaacttct ctctcagttc ttttattaat ctgacaaatt cgttgatagt gccagcgtcc
    16861 acgctggtac taattttaac ggttaattaa tcaaaatttg gcacaagcga ggacgcttgc
    16921 gccatcatag agatttgata aattatactt aatgtattat gaccttagat attttatacc
    16981 aagacaactc gcttatcgcc atcaacaaac ctgccggagt gttggtgcat cgttcttggt
    17041 tagataaaca cgaaacggtg tttgcaatgc aaaccctgag ggatcaaatc gggcaacacg
    17101 tttttccgat tcaccgcctt gaccgcccaa cctcaggtgt attgctgttt gctctcaaca
    17161 gcgaaaccgc ccgaataatg agcgagcagt ttgaacaaca cctagtacaa aaaacttatt
    17221 tggcggtggt gcgtggctat ttacaaggtt cggcacaaat tgattatccg ctcaaagtga
    17281 ttttagataa aattgcggat aaattttctc aggaaaaaga ggctcaagcg gcgattactg
    17341 attataaagg cttagcaacg gttgaaatgc cttaccctgt cggcaagcac caaacctctc
    17401 gttatagttt ggttgaactt agccctaaaa ccgggcggaa acatcagctt cgccgccacc
    17461 tgaaacacct gttccacccg attatgggag acagcaaata tggcgactta caccaaaacc
    17521 gtgctttagt tgaaaaatca ggcgtaagtc gtttaatgtt acacgcccat aaattgcaat
    17581 ttcagcaccc gaaaaatttg caaaaaatag agataattgc atcgcttgat gagcaatggc
    17641 aacgcctctt tgcatttttt gactggaact ttactcaata ttattagaca aaaaagagga
    17701 ttgaatggat aattcacttt tatcattgac acacgagcaa caacaagccg cagtagaaga
    17761 aattcaaaaa ctgatggcac aaggcatcag tgccggagag gcaattcaaa ttattgctaa
    17821 tcaattacgt gacaaatatc aaatattgga gaaatcaaac aatgaataaa ttatggacag
    17881 tgcttgccct aacaataact tcccactata gctttgctgc cgctgaaaaa atagtcacta
    17941 aagatttacc ggcagaagga aaacctgcag tcgtgctaca ggtttttgat gaaagtgaaa
    18001 aaattgcaaa acctattaag ggaaataagc tctttattag caaaaaacaa acaaggcttt
    18061 gctggcacag tattaatctt cctgtacaaa ataaagttac tattgcagaa gctttctatg
    18121 cccctgctgc aatgaaatta gcttctcccg gctctaaaat taattcttct gcagacaaga
    18181 aaaatcatac tatcattact gaaataaacc ttgcaaataa tcaagtatta aatcgttgct
    18241 ggggttttga taaaactgac cctgtcggta aatacaaaat ggaaattcaa attaacgatc
    18301 acattttcaa aggtttagaa tttgaaattg taaaataacc taaaagccac agagtaacac
    18361 cctgtggctt tttgctaaat cattgttttt aaattggtta aattgtgcag caaataatct
    18421 ttactcttca caaaggctct cgcctgttgc cagttgctaa attgttgctg agtgcattga
    18481 ttaaaacgta ccagcacttc caaactttca ttgccgacac aaataaaatc agctaataat
    18541 tgggttaatt tttcactgtt ttcaccatcc attgcagttg caattttctg ctcccattta
    18601 accgcttgtc cgagcaaata accccgctgg gctttgctta aattactcaa ccacatccca
    18661 tccgcttttg gcattgcctc aaccaaagta aataagtcgc ctagatttcc ttgcttgatt
    18721 tcaaactcca attcacaaat cggctcttca ccaaaatgat ttttaatgat gccctgatct
    18781 aacgctacct caatgtcaga catccccact tgcaccaacc aagttttacg agtgaaatcg
    18841 gtgctgaata tcgcttgcaa gctttctgca atctgctctg aattttcaaa cggcaactgg
    18901 tatttttcca ctaatgtttg aaaatccggc tggctattgg gtaaagctaa attatattcc
    18961 ggacgaatat gcaaaccgcc tacaatttcc ccttgtgttt ttaacgtgat ttcatattgt
    19021 tgattcacag aacgcacccg cagccccatt ttttgcgtgg caaaaaattg ctcgggcgta
    19081 tcataatagg tgttgcctaa caattccgtt tgatgagcaa gcacagggaa tggcgaggtt
    19141 tgattcaagt agttttccac taacgccaca ttctgctgtt ccaacattat tttcagttcg
    19201 atttctgctt gtttttggtt ttccatttca cacgcccctg caacgttgta taatcaagcg
    19261 gttattttat caataaattt tgcaaaatgt tttcaaaaat tcaccataaa ctgaataact
    19321 ttgtccagcg tggactcgac aaccatttac gcctcgccgt taccggctta agccgtagtg
    19381 gcaaaacggc atttattacc agcttggttg atcagctttt gcatatcaac aaaggcggta
    19441 attcgcattt aaacctgttt gcgcctgcac gccacgggca aattctatcg gtaaaacgcg
    19501 ttgagcaagg ggatttaact attccccgct ttgaatatga taaaaaccgc caaagccttg
    19561 aaaatcaacc acctcaatgg cctgaatcca ccactggcat tagcgaaatt cgccttgcga
    19621 ttcgctacca gcggcaacat tctctgctac gtcatattaa agaaaccggc acgctttatt
    19681 tggatatttt cgattacccg ggcgaatggc tgttagattt acccctgctc tccctttcct
    19741 ataaagaatg gtcgcaaacg caacaaacca tacataaaga tgagcgtgca gagcttgcca
    19801 caccttggtt acaagcggtt aaaaaactcg atctttttgc aaaaaccgat gaaaatttac
    19861 tggcagaatt cagccaacaa tacaccgatt atttgctcgc ctgcaaagct caaggaatgc
    19921 aatatattca gccggggcga tttgtgttgc caactgaaaa tgccaaaggt gcaccggtat
    19981 tccaattttt tccgttatta gatttaagcg aagctgagtg ggaaaagttg gaacaaagcg
    20041 acagaaacag tattttccat accctcaaaa aacgctatga gcattaccag aaaaaaatcg
    20101 tcaaaccgtt ttatgaagat tacttctctc aatttgaccg ccaagtgatt ttggcagact
    20161 gcctcacacc gttaaattat ggctataacg aatttatgga aatgaaatta gggttacagc
    20221 aactgtttaa acatttccat tatggcaatc gttcgctatt tcaccgtctg ttttcgtcca
    20281 acattgataa attgctattt atcgcaacaa aggcagatca cattactagc gaccaagtgc
    20341 cgaatttgga aagcctaatg cgacaattag tgcaagaagg gggaagacac gcagaatttg
    20401 atggtatcga aaccggctat ttagccattt cctcgattca agcaaccgat gcggtgaaag
    20461 tgactcagca agataaaatc attaaagcga taagagggat ccgttccagc gatagaaaac
    20521 aagtgacact ctaccctggc agcgtgccaa atcgcatacc cgataaaaat tactggcaat
    20581 ttaaccgttt tgaattcgac caattcgagc ccaagcaact tgattatagc caagcgattc
    20641 cacacttcag aatggattcg gtgctacaat ttttattggc ggatatgttt gagtaaaatc
    20701 ttgttgcata tttccattaa aggtataaaa ttttatacat tatgaatact gtaatttccc
    20761 aacgaaaacc aattcactgg gttggatcaa ccttagatga tattcgtgaa tttccggata
    20821 acattaaaag agaactcggt tttgatcttg atttagttca gcaaggctta ttaccgaggg
    20881 attttaaagc gatggcaaat ttgggttcag gcgtaatgga aattcgagta aaagatccct
    20941 caggggcttt tcgcttagtg tatttagcta aatttaaaga tgcaatttac tgtttacacg
    21001 ctttccaaaa gaaaacgcaa aaaacagccc ctaaagacat tgctgtcatt aaagcacgct
    21061 atgctgccgt aaaggagtta gaaaatgaat aatattgata ctaaaattcg ccatactaca
    21121 gaagctcagg gtaatgtttt tgaagatctt ggtttcccta ttgatgaagc tcaaaaattg
    21181 aaatctgcca gtcagcaact gattgaaact aaactgatgc taatgaatga aatgagcaac
    21241 tggattgata aaaataatct caaacaatca gaagcggctt ctattctagg tgttagccgc
    21301 cctcgaattt ctgatatggt caatggcaag ttagaaaagt ttaccctaga taccttagtc
    21361 acttttgttg caaaaaccgg caaaacaatc caattgcaat tatcctgata tttgcaaaat
    21421 tttactcaaa ttcaaccgct tgttgctttt atcattcact aacaaggtta tttcaagtaa
    21481 aattgtgact aattttttat taataaacac aaattatggc aaaaaaacct aaagttgcat
    21541 caaatacgat tgcgttaaat aaacgtgcca gacacgaata tttcattgaa gatgaaattg
    21601 aagccggctt agagctacag ggctgggaag tcaaagcatt gcgtgccgga aaaggcaata
    21661 tcagcgatag ctatgtcatc tttcgccacg gcgaagcctt cttattcggg gcaatgatta
    21721 cgcctttgaa tatggcatca acccatattg tcagcgaccc gacccgcacc cgcaaacttc
    21781 tactgaataa acgtgagtta gactcactgt tcggtaaagt taatcgtgaa ggttatacca
    21841 ttgttgccac ctcaatgtat tggaaaaatg cgtgggtgaa agtaaaaatc ggcttagcca
    21901 aagggaaaaa actgcacgat aaacgtgaag atattaaaga ccgtgaatgg caagtggcta
    21961 aacagcgtat tatgaaaaac gccaatcgtg gctaaatgaa taattaccct ctccccttgt
    22021 gggagaggga cagaaaaatt gcgttcagca atttttcagg gaaaggggga tttgtaaaag
    22081 ttcaaggaaa aacaacgctt gccctctctc tgaaaaatat ttctgaacga aatatttttc
    22141 ggtctctctc ccataaaggg agagagtgaa acacaaattt aaactaagga acatacaatg
    22201 atcgaccaaa acctacttcg taccaattta gaagacgttg ctacagctct taaaatcaaa
    22261 cgtaatttta ttttagatgt agagcgagta aaaacccttg aagaacagcg taaaacgcta
    22321 caagttaaaa ccgaaacctt acaagcagaa cgcaacactc gctccaaaaa catcggtgcg
    22381 gcaaaagctc gtggcgaaga tatttcagct ttattagccg aagtagattc aatgggcaac
    22441 gaattagaca cggcaaaagt agaattggat aaagtacagg cagaaatccg tgagttgttg
    22501 ctttctgtgc caaacttacc ggcagatgaa gtaccactcg gtaaagacga tagcgaaaac
    22561 ttagaagtat tacgttgggg cgaaccacgt caattcgact ttgaagttca agatcacgtt
    22621 acccttggcg aaaacttaaa cggtttagat tttgctgccg gtgtaaaatt aaccgccagc
    22681 cgttttgtgg taatgaaagg taaacttgcc cgcttacacc gtgcattatc tcaatttatg
    22741 ttggatttac acactgaaca acacggctat gtggaaacca atgtgccatt tttagtcaat
    22801 cacgacactc tatacggcac aggtcagcta ccaaaatttg gcgaagattt attccatact
    22861 caaccattaa cagggcaaga tccaaacgag gtgcaacgcc cattcggttt gattccaacc
    22921 gctgaagtgc cagtaacgaa cttagtgcga gatgaaatca ttgatgaaga cagcttacca
    22981 ctgcgttata ccgcccacac cccttgtttc cgtgcagaag ccggttctta tgggcgtgat
    23041 actcgtggtt taattcgtat gcaccaattt gaaaaagtgg aaatggtgca aattgtcgcc
    23101 cctgaaaaat caatggaagc cttagaagaa ttaaccggtc acgcagaaaa agtcttacag
    23161 cttttaggct tgccataccg caaagtgcta ctctgcactg gtgatatggg ctttggtgca
    23221 gcaaaaacct acgacttaga agtttggcta ccggcacaaa acacttaccg tgagatttct
    23281 tcttgctcaa atatgtggga tttccaagcc cgccgaatgt ctgcacgttg taaagctaaa
    23341 ggcgacaaga aaactcgctt ggttcacacc ttaaacggct caggtttagc ggttggtcgc
    23401 acactggtcg ctgtgttaga aaactaccaa aatgccgatg gctctattac tgtgcctgag
    23461 gtgttaagac cttatatggg tggtttggaa gtaattaccg cttaagatta ataaatgaaa
    23521 ccaatctcag aaatggggtt ggttttttta ataaatctta tccctaatct ttttcaggat
    23581 aattcataaa aatttcagta ac
//
LOCUS       DANLZD010000023        23183 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.023, whole genome shotgun sequence.
ACCESSION   DANLZD010000023 DANLZD010000000
VERSION     DANLZD010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 23183)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23183)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23183
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.023"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            37..288
                     /locus_tag="PXE26_000671"
     CDS             37..288
                     /locus_tag="PXE26_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5593281.1"
                     /translation="MKIVVFQRKALKQLRKIPTGAEIRRKCDDLAYFPYCANIKALTN
                     HQYDYRFRVGNYRIFFNIEGETMNIVSIEEVKKRDERTY"
     gene            272..619
                     /locus_tag="PXE26_000672"
     CDS             272..619
                     /locus_tag="PXE26_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5593282.1"
                     /translation="MKELTNIQYLNNEEGKPAFAVLPIATLEWLKQKANIKTAIETGI
                     PSAVAGIALDNNYSALRAWREYLGLTQEEVAQRLGISQSAYSQHENAKNLRKTTRIKI
                     AYALGLNEEQLDF"
     gene            complement(660..1820)
                     /gene="trmG/rlmN"
                     /locus_tag="PXE26_000673"
     CDS             complement(660..1820)
                     /gene="trmG/rlmN"
                     /locus_tag="PXE26_000673"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA
                     large subunit methyltransferase RlmN"
                     /protein_id="HDL5593283.1"
                     /translation="MSELITNAGCGSAEQPKEKINLLNLNRQEMRELFAEMGEKPFRA
                     DQLMKWIYHFGEENFDNMSNINKVLREKLKRIAEIKAPEVAVEQRSADGTIKWAMQVG
                     DQQIETVYIPEDDRATLCVSSQVGCALACTFCSTAQQGFNRNLSVAEIIGQVWRASKI
                     IGNFGVTGVRPITNVVMMGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVV
                     PALDKMREQIDVALAISLHAPNDELRDELVPINKKYNIKMLMDSVNKYREVSNANHGK
                     VTIEYVMLDHVNDSTNHAHQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQK
                     TLMEYGFTVTVRKTRGDDIDAACGQLAGDVIDRTKRTLEKRKFGQGIAVKTH"
     gene            2080..2976
                     /locus_tag="PXE26_000674"
     CDS             2080..2976
                     /locus_tag="PXE26_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HDL5593284.1"
                     /translation="MKLSTIKKALVLTFGLSAAMAMAEPFKVVTTFTVIQDIAQNVAG
                     DKATVESITKPGAEIHDYQPTPKDIVKAQKADLVLWNGMNLERWFERFFENVKGKPAV
                     VVTEGITPMPITEGEYKNLPNPHAWMSTDNALIYIENIRAALVKYDPQNADTYNANAK
                     AYAEKVKGIAEPLRQRLAFIPEQQRWLVTSEGAFSYLAKDYNLKELYLWAINAEEQGS
                     PKQVKKVIDGVKANKIPVVFSESTVSDKPAKQVAKETGALYGGVIYVDSLSEKDGPVP
                     TYLDLLKVTIGTIVEGFERSKK"
     gene            2989..3732
                     /locus_tag="PXE26_000675"
     CDS             2989..3732
                     /locus_tag="PXE26_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HDL5593285.1"
                     /translation="MTTVSASISVENLSVRYNNGHIALQDVSFHLENGTICALIGVNG
                     GGKSTLFKSLMGLVKPLTGSVKLSQLPIAKALKQNLVSYVPQSEEVDWQFPVSVYDVV
                     MMGRYGYMNFLRRPSQTDKLKVEQAMQRLDVLHLKDRQIGELSGGQKKRVFLARALAQ
                     ESKIILLDEPFTGVDVKTENAIVELLKQLKNEGHLILVSTHNLASVPSFCDQVLMVNR
                     TLLAKGKTEEIFNNQNLERVFGGLLHYQK"
     gene            complement(3789..4598)
                     /locus_tag="PXE26_000676"
     CDS             complement(3789..4598)
                     /locus_tag="PXE26_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDL5593286.1"
                     /translation="MLNWILEPLQFEFMQIALITAILVAGVSAVLSCYLVLKGWSLMG
                     DAISHAVLPGVVISSLAGLPLSIGAFFSGLGCALSVGYLKENSRLKEDTVMGIVFSGM
                     FAFGILLFTAFNTGEHLTHILFGNLLGVTKSDLLQTLLISLFTFVVMVAKRKDFLLYC
                     FDVNQAKVAGLPVRLLHYGLLSLLALTIISAMQVVGVILVVAMLITPGITAYLLTKRF
                     DSMLLIALGVAIFSSVFGTLLSYHIDAATGPTIILVQAAIFFLSFAYSKIH"
     gene            complement(4591..5451)
                     /locus_tag="PXE26_000677"
     CDS             complement(4591..5451)
                     /locus_tag="PXE26_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDL5593287.1"
                     /translation="MLDLLLEPFTYNYMQKAIFVSMGVGLVCAFLSAFLMLKGWSLIG
                     DALSHAVVPGVAIAYALKLPYAFGAFFSGILAALSILWVKSLTKIKEDAVIGFIFTTF
                     FALGMFIVSLNPTSVDVNSIVMGNILGIADDDLWQVVLIIAISLLGLILFWKDLLLVF
                     FDEHHALSVGLSPLRYKVIFFTLLSACVVVALQTVGAILVIAMVVTPGATAYLLTDRF
                     PRLVLIAMLIGTLTSGIGAYLSYFLDGATGAVIVCLQTLIFLFAFCFAPKYGLITQKR
                     KLHRVEVQNA"
     gene            complement(5525..6310)
                     /locus_tag="PXE26_000678"
     CDS             complement(5525..6310)
                     /locus_tag="PXE26_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HDL5593288.1"
                     /translation="MMKKITILGLGWLGLPLAEALQNKGWRVAGTKRTVGELAIECYP
                     LDLNALAVTSEIEQLLAADALVIALPLSQIRPENYGCGIQTLVSLAIEKGLKHLVFTS
                     STSVLPMKSGVFDENAVVDSANLLVKMENWLLSQPIHCDILRLAGLVGKKRHPVFYLA
                     GKQNLSGAGQPVNLVHLEDCIAAISLLLEQPNGQRIFHLCAEQHPSRKDYYSEMAKRF
                     GLADLHFSEENQPLVRLIKADKICQELGFRYYYPDPYQFKVDI"
     gene            complement(6398..6473)
                     /locus_tag="PXE26_000679"
     tRNA            complement(6398..6473)
                     /locus_tag="PXE26_000679"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6438..6440),aa:Gly,seq:gcc)
     gene            complement(6500..6586)
                     /locus_tag="PXE26_000680"
     tRNA            complement(6500..6586)
                     /locus_tag="PXE26_000680"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6550..6552),aa:Leu,seq:taa)
     gene            complement(6605..6680)
                     /locus_tag="PXE26_000681"
     tRNA            complement(6605..6680)
                     /locus_tag="PXE26_000681"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6645..6647),aa:Gly,seq:gcc)
     gene            complement(6846..8084)
                     /gene="pepT"
                     /locus_tag="PXE26_000682"
     CDS             complement(6846..8084)
                     /gene="pepT"
                     /locus_tag="PXE26_000682"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HDL5593289.1"
                     /translation="MKQSLLNRLLRYTQIHTTSDPKSQTVPSSQQQWDLLHLLKTEVE
                     AMGLSEIYLDPNGYLFASLPANIDKTLPVLGLIAHVDTSPDFNGENVKPQVIEAYQGG
                     NILLNGSGDYLSPTDFPNLNKLIGDTLVTTDGTSLLGADDKSGIAIILSAIEYLQANP
                     HIPHGKIRIGFTTDEEIGRGADHFDVNAFGADVAFTFDGGPLGELQYENFNADAATVT
                     FFGRSVHPGTAKGKMINALERACEFQHRLPPHLTPATSEGREGFIMLHGIEGGIDKAE
                     IHYILRSFERDELAAFGKMLNDTLAEMQQIYGEHCGKVEIVEQYRNMREVLDDYGYLV
                     EIAENAMREQGIEPNLEPIRGGTDGSRLSFMGLPCPNLFTGGENFHGRFEFISVDTME
                     KATKVVIDICRKFADYDFNK"
     gene            complement(8104..8493)
                     /locus_tag="PXE26_000683"
     CDS             complement(8104..8493)
                     /locus_tag="PXE26_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HDL5593290.1"
                     /translation="MYMLDTNTVSYFFRGNANVVAKLKSINPERLCISSVTAAELVYG
                     VAKRNNGQLSQFLDYFLSSVKVLDWNYRCAELYGKLRAEMEKNGKVMGVQDQMIASHA
                     LAEECILVSSDQAFKMVPDLKLENWLH"
     gene            complement(8494..8754)
                     /locus_tag="PXE26_000684"
     CDS             complement(8494..8754)
                     /locus_tag="PXE26_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HDL5593291.1"
                     /translation="MEKIARLFRNGRNQAVRLPVEFEFDAEQVYVSKKENGDILLSLR
                     SRNTEHWQRLFELLPAVVCDETFLDTKERNQSFEQRDPFEVA"
     gene            complement(8870..9082)
                     /locus_tag="PXE26_000685"
     CDS             complement(8870..9082)
                     /locus_tag="PXE26_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HDL5593292.1"
                     /translation="MRDEYDFSNAVKNPYAKGLKSKSVVTIRIEDDVISYFKQLAEEV
                     NLPYQTLINLYLKDCVEQKRKPTISW"
     gene            complement(9083..9370)
                     /locus_tag="PXE26_000686"
     CDS             complement(9083..9370)
                     /locus_tag="PXE26_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL5593293.1"
                     /translation="MEEINGFEWDSEKALRNQQKHGVSFIEAVSVFYDNNAMLIPDPD
                     HSSREERFLLLGRSNKDNLLVVVHCERNTNIRIISARLATKRESGQYKGVH"
     gene            complement(9533..13066)
                     /gene="mfd"
                     /locus_tag="PXE26_000687"
     CDS             complement(9533..13066)
                     /gene="mfd"
                     /locus_tag="PXE26_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HDL5593294.1"
                     /translation="MSLISLNLPKSDGNFQDHQTLGNLVGHSDTLAISQAARAFYGLT
                     VVVTPDTRTALRLEKALPQFAGLPVQLFPDWETLPYDNFSPHQDIISARLSALFELQQ
                     GRQQILLLPINTLMQKVCPPNYLANNVLLIKKGDRFSIQKLRLQLENAGYRAVEQVLE
                     YGEYAVRGSILDLFPMGAEEPFRLDFFDDEIDSIRTFDVDNQRTKTEIAEINLLPAHE
                     FPTDSNGIEHFRAKFREKFGEIRREPEHIYQQVSKGILNAGIEYWQPLFFEEMASLFD
                     YFPAQTLFITFADIQQKAEQFHQDTQNRYESHRVDPMRPLLPPSDLWFAIDEVNRWLK
                     GYPRLTITSEKIRKSAAKMNANVANLPDIAIQSSAKEPFSAFQQFRQKFDGNILFSVE
                     SEGRRETLLDLLAPLGVKPKQVNSLDEAQGLPFSLIISPLDQGFVVETGGHGTRPYDD
                     ELNTNGENDNNYVGAGPVPARNLAIICETDLLGERVQTRREKNRKAVNPDTLIRNLAE
                     LKIGQAVVHLENGVGRYGGLTVLDAGGIKAEYLVLHYANDAKLYVPVASLHLISRYIG
                     GADETAPLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQTGFAFAYDKAEFDQ
                     FSATFPYEETDDQKIAINAVISDMCQAKAMDRLVCGDVGFGKTEVAIRATFLAVMNHK
                     QVVILAPTTLLAQQHYENFKDRFANYPVNVEVLSRFKTAKEQKTILQNVAEGKVDILV
                     GTHKLLQDDVAFRDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMA
                     LNGMRDLSIIASPPARRLLIKTFVRQSDEMVIREAILREILRGGQVYYLHNDVATIEN
                     CAEKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANT
                     IIIERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPHPKTLTKDAEQRLEAMSTIDNLG
                     AGFALATHDLEIRGAGELLGSEQSGQIESIGFSLYMDLLENAVKALQEGREPSLDEIT
                     QHQAEIELRVPALLPDDYLPDVNMRLSFYKRIASSENLQSLNDLKVELIDRFGLLPEA
                     TKNLFAITQLRLSAQTLGIKKIDAGIHGGYLEFKPTAQPDPMKFIALIQKQPAVYSFE
                     GAVKFKFRLALEDNRKRLEFVENLLREVVGG"
     gene            13227..14444
                     /locus_tag="PXE26_000688"
     CDS             13227..14444
                     /locus_tag="PXE26_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine transporter"
                     /protein_id="HDL5593295.1"
                     /translation="MKNKILGSALMIAGTTIGAGMLAMPLTSAGMGFGATALLLVGLW
                     ALLAYTGLLFMEVYQTAPQKDVGVASLAEQYFGLIGRVLATFSLLVLLYALLAAYITG
                     GGSLLAGVMPEMADADMKLKISILIFTAVLGTFVVVGVKSVDGLTRVLFLGKIVAFIA
                     VLLMMLPKAKLENLTAIPLDNLLIISAIPIFFTAFGFHVIMGTINSYLDADIGKIRKS
                     IYIGTAIPLVAYLLWQLATHGVLSQNEFTTILTQDPTLNGLVKATSQITGSTILGEMV
                     RLFSVLALITSFLGVSMGIFEGVGDLLKRLNLPTNRLWLTIATFTPPILFALFYPNGF
                     IKALGYAGLLFAFYGMILPIGLAWKARRQYPNLPYRVIGGNLALVVALIAGIIIMVIP
                     FLIQAGYLPQAVG"
     gene            complement(14524..15030)
                     /gene="hutX"
                     /locus_tag="PXE26_000689"
     CDS             complement(14524..15030)
                     /gene="hutX"
                     /locus_tag="PXE26_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization cystosolic carrier protein
                     HutX"
                     /protein_id="HDL5593296.1"
                     /translation="MISIEQQTALRNELAENPGQILEMLAAKYQCTLEEVMLNLPAEM
                     LKVTEGERFAEVLQQIHEWDDAITLISHTEDTIIEFVGKLPSGSISRGFYNFEHKEGG
                     GLQGHLRYENCAKIYLLDRPFMGKRTVSLIFINKKGNAMFKIFVGREKIGGALKEHQI
                     KALYQLIG"
     gene            complement(15085..17163)
                     /locus_tag="PXE26_000690"
                     /pseudo
     CDS             complement(15085..17163)
                     /locus_tag="PXE26_000690"
                     /inference="COORDINATES: protein motif:HMM:TIGR01786.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
     gene            complement(17130..17513)
                     /locus_tag="PXE26_000691"
     CDS             complement(17130..17513)
                     /locus_tag="PXE26_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL5593297.1"
                     /translation="MVFTSYSIKSKKLCPTILALSVSSILSSQATYAEETTAELSEVN
                     VVAKEDVKASIEKKNKEIIQQELIQNNRDLVRYSPDVGIVNQGRHQKGFAIRGVEDNR
                     VGISIDGVSLFLIQKKIPFINAMVI"
     gene            17668..18186
                     /gene="hutZ"
                     /locus_tag="PXE26_000692"
     CDS             17668..18186
                     /gene="hutZ"
                     /locus_tag="PXE26_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein HutZ"
                     /protein_id="HDL5593298.1"
                     /translation="MTTNRQEVLQNRLGPEIEELKQQIKTIMLATIDKDGVPNVSYAP
                     FVINNGEYQVLITTIARHARNLQEVPKVSLMLIEDESKSRQIFARRRLTFDATVRMIE
                     RTDEEWNNSIAALKARHGDLVDELSNMQDFKLFSFKPTAGLFVKGFGKAFDVGVDDLI
                     NVVHLDQGHQTA"
     gene            18336..20948
                     /gene="pepN"
                     /locus_tag="PXE26_000693"
     CDS             18336..20948
                     /gene="pepN"
                     /locus_tag="PXE26_000693"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HDL5593299.1"
                     /translation="MQPKAKLRKDYRAPDFTITDIYLDFQLDPDRTFVTSKLTVVRKN
                     PEATTLRLDGHSFDFLSLKYNGEPFSAFQKDDESLTLNLADVPAERFELEIETALNPA
                     QNTSLQGLYKSGDGFCTQCEAEGFRQITYMLDRPDVLAKYTTKITASKSKYPYLLSNG
                     NHIAQGDLHDGRHWVEWQDPFFKPSYLFALVAGDFDLLQDKFITKSGREVTLEIYVDR
                     GNLDRAPWAMESLKRSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKF
                     VLAKPETATDTDYLDIEAVIAHEYFHNWTGNRITCRDWFQLSLKEGLTVFRDQEFTSD
                     LWSRSAKRIEDVRLLRTVQFAEDASPMAHPIRPEKVIEMNNFYTVTVYEKGAEIIRMI
                     HTLLGEEKFQQGMQLYVARHDGSAATCEDFVKAMEDASGVNLEQFRRWYSQSGTPELT
                     ISDEYDETRKAYRLHISQMTPATHDQMDKLNLHIPLKVALYGEQDGKRIPLQYELLTV
                     SDVLDVTAEHQTFEFHNVTQRPVPALLCDFSAPVRLDYNYTTEQLLTLLKHAENDFVR
                     WDAAQMLYTNELRENLSRYQQHQPLSFSEGLVNALTFVLDNSASLPELTALTLTLPKE
                     TEFAESFKTIDPQGIAVVREFMQHSIAHALQDKLLAVYHQNQCGEYQVVAEDIAKRAL
                     RNACLSYLAFTDLGNALVHKHYNNADNMTDTLAALQAATKAQLSCRDALLADFEQKWK
                     HDGLVMDKWFMLQATRPDDDVLSIVQNLMEHPSFNFNNPNRLRSLVGAFCGQNPKAFH
                     AIDGSGYRFLVDTLIKLNESNPQVAARLIEPLIKLSRYDNQRQTLMRRGLERLRELDN
                     LARDLFEKIEKALD"
     gene            complement(21008..21280)
                     /locus_tag="PXE26_000694"
     CDS             complement(21008..21280)
                     /locus_tag="PXE26_000694"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HDL5593300.1"
                     /translation="MVAKLFSVYGRVQGVAFRFFTLQEANRLGIKGYVRNRDDGSVEV
                     VAEADEQTIAQLENWLQQGSPAAKVERVIVSDYLGSERFKRFEVRY"
     gene            complement(21334..22968)
                     /locus_tag="PXE26_000695"
     CDS             complement(21334..22968)
                     /locus_tag="PXE26_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700110.1"
                     /note="is involved in the transport of the murein peptide
                     L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein OppA"
                     /protein_id="HDL5593301.1"
                     /translation="MQSKFSLSLLTTSLVLGLSANVFAAKVPEGTTLAEKQEITINNG
                     FEPSSFDPHKIEGVPESQVAYQLFEGLVTKDSDGNIQPGVAESWENTPDYKTWTFKLR
                     QDAKWSNGDAVTAHDFVFAWQRLVNPLTASPYSSYLTYLNVENAQDIIDGKKKPEELA
                     VKAIDDHTFQVQLSQPVPYAVELATHSSLLPVHKATVEKHGDAWVQKGNLVGNGAYTL
                     ADHVINEKIVFERNKNYWNDKETVINKATFLAIANAATDVSRYRAGDLDMTNYALPPE
                     QFATLKKEIPNEVFTARTLSTYYYEINHKRAPFDNVKVREALNLALDRTIITDKVLGQ
                     GQTPTYVFTPPYIHEGEKIQQPAYSKDSMADRKAKALKLLEEAGYSKANPLKFTILYN
                     TNDNHKKIAIAVSSLWKQGTDGIVDVKLENQEWKTFLDTRRNANYDVSRAGWSADYNQ
                     ATTFVNYFLSNSSNNTAFYKSQAYDDAVAESYKATDAAGRAAAYAKAEEQLAKDYAII
                     PIYNYVNPRLVKPYVKGYEGKDPQDDILLRNLYIVK"
BASE COUNT         6760 a         5133 c         4596 g         6694 t
ORIGIN      
        1 gaaaaaactt ataaaactta taaaatagag gcaaaaatga aaatagtggt attccagcgt
       61 aaagccttaa agcaattacg aaaaatccca actggtgcag aaattcgccg aaaatgtgat
      121 gatttagctt actttcccta ctgtgccaat attaaggcat taacaaatca tcaatatgat
      181 tatcgctttc gggtcggaaa ttaccgtatt tttttcaata ttgaaggcga aacgatgaat
      241 attgtgtcta tcgaagaggt taaaaaacga gatgaaagaa cttactaata ttcaatattt
      301 aaataatgaa gaaggaaaac ctgcctttgc cgtacttccg atagcaacac ttgaatggct
      361 taagcagaaa gcaaatatta aaaccgcaat agagaccggt attccatctg ctgttgctgg
      421 aattgcatta gataataact actcagctct gcgtgcttgg cgggaatatt taggtttaac
      481 tcaagaagag gtggcacaac gcttggggat ttcgcaatca gcttatagcc aacacgaaaa
      541 tgcaaaaaat ctacgaaaaa cgacccgcat aaaaattgcc tatgcgttgg gtttaaatga
      601 agagcaatta gatttctaat aacaaaaagg caggaacctc tgccttttca ctattcagat
      661 taatgggttt taaccgcaat accttgcccg aatttacgtt tttcaagggt gcgtttggtg
      721 cggtcaatca catcgccagc aagctgtccg caagcggcat caatatcatc acctcgtgtt
      781 ttacgcactg ttaccgtgaa accgtactcc atcaaggttt tttggaaacg atctacccga
      841 gagttagagc ttttaccata aggagcttct gggaacgggt tccacggaat caagttaatt
      901 ttacacggcg tgttttttaa tacttcagca agttggtggg cgtggtttgt gctgtcattg
      961 acatgatcta acatcacata ttcaatcgtg accttgccgt ggttggcgtt agaaacttca
     1021 cggtatttat tcaccgaatc catcaacatt ttgatgttgt actttttatt aatcggcact
     1081 aattcatcac gcagttcatc gttcggagcg tgaagtgaaa ttgccaacgc cacatcaatt
     1141 tgctcacgca ttttgtctaa tgccggcacc acacccgaag tggaaagcgt gacacgacgt
     1201 ttagataagc cgtaagcaaa atcatctaac atgatttcca ttgccggaat cacgttattc
     1261 atattcagca atggttcacc cattcccatc atgaccacat tggtaatcgg gcgaacaccg
     1321 gtcacgccaa aattgccgat aattttagaa gcacgccaca cttgcccgat aatttccgcc
     1381 acgcttaagt tacggttaaa gccttgttga gcggttgagc agaaggtaca agccaaggca
     1441 cagcctactt gtgaagaaac acacagggtt gcacggtcat cttcaggaat atataccgtc
     1501 tcgatttgct gatcgcccac ttgcattgcc catttaatcg taccgtctgc agaacgttgt
     1561 tctaccgcca cttcaggggc tttaatttcg gcaatacgct ttaatttttc acgcaatact
     1621 ttattgatat tgctcatatt atcgaaattt tcttcgccaa aatggtagat ccatttcatt
     1681 agctggtcgg cacggaaagg tttttccccc atttctgcaa acagttctcg catttcttga
     1741 cgattaagat ttaataaatt gattttttct tttggttgtt cagcagaccc acagcctgca
     1801 ttggtaatca gttctgacat aaagttgaaa gcctcgttat tacacggatt acggcaaaag
     1861 gttagggcaa atgcccttat tttgcgattg gattttaaag cgtgcaattt tactggctct
     1921 tgagggatta ggctagtaat ttttaatcaa aagagttgaa ttgcctgagt aaacttatca
     1981 agaataacct tataaaaaca agactattta catcattccc aatgttctat agaatagctt
     2041 tcgataattc tcattctcaa taacaaaagg aggctaaaaa tgaaactatc aacaattaaa
     2101 aaagcattgg tattaacctt tggtttaagt gcagcgatgg caatggcaga gccgtttaaa
     2161 gtagttacca cttttaccgt gattcaagat attgcacaaa atgtcgccgg cgataaagcc
     2221 actgtggaat ccattactaa accgggtgct gaaattcacg attatcaacc aacaccaaaa
     2281 gacattgtaa aagctcaaaa ggcagactta gtgttatgga acggtatgaa ccttgagcgt
     2341 tggtttgaac gtttctttga aaatgtaaaa ggtaaaccgg cggttgtcgt caccgaaggc
     2401 atcaccccaa tgccgattac cgaaggtgaa tataaaaatc taccaaatcc gcacgcttgg
     2461 atgtccaccg ataacgcatt aatttacatt gaaaatattc gtgcggcttt agtaaaatat
     2521 gacccacaaa acgcagacac ctataatgcc aatgcaaaag cctatgctga aaaagtaaaa
     2581 ggtattgctg agccactccg ccaacgttta gcttttattc ctgagcagca acgttggtta
     2641 gtaaccagtg aaggggcatt tagctattta gcgaaagact acaacttaaa agaactttat
     2701 ttatgggcaa tcaatgcgga agagcaaggt tcgccaaaac aagtgaaaaa agtgattgat
     2761 ggtgtaaaag ccaacaaaat ccctgttgtg tttagcgaaa gtaccgtttc cgacaaaccg
     2821 gcaaaacaag tggcgaaaga aaccggtgca ttatacggtg gcgtaattta tgtggattca
     2881 ctttcagaga aagatggtcc ggttccaacc tatttagatt tgcttaaagt gactatcggc
     2941 accattgtcg aagggttcga acgaagcaaa aaataataag atttagcaat gacaactgtt
     3001 tcagcctcca tttccgtcga aaatttatcg gtccgttata ataacggaca tatcgctttg
     3061 caagatgtct cgtttcatct ggaaaacggc acaatttgtg cattaatcgg cgtgaatgga
     3121 ggtggaaaat ccactctgtt taaaagttta atggggctgg ttaagccatt aaccggctct
     3181 gttaagctga gtcagctccc gattgctaaa gccctcaaac aaaatttggt ttcctatgtg
     3241 ccacaaagtg aagaagtgga ctggcaattt ccagtttcgg tttacgatgt ggtaatgatg
     3301 gggcgatacg gctatatgaa ttttctacgc cgcccaagcc aaaccgataa gctcaaagta
     3361 gagcaagcaa tgcaacgcct tgatgtttta catctcaaag acaggcaaat cggcgaactt
     3421 tccggcgggc aaaaaaaacg ggtattttta gcccgtgcct tagctcaaga aagtaaaatc
     3481 atcttacttg atgagccttt caccggtgtg gatgttaaaa ccgaaaatgc gattgttgag
     3541 ctacttaaac agcttaaaaa tgaggggcat ttgattttag tttccaccca caaccttgcc
     3601 agcgtaccaa gcttttgcga tcaggttttg atggtcaatc gcacgctact ggcaaaaggt
     3661 aaaacggaag aaatctttaa taatcaaaat ttagaacggg tgttcggcgg tttattgcat
     3721 tatcaaaagt agtgtttcag caacaaatca caaacaaata gggaggcaaa tgcctcccta
     3781 tttttgtatc aatgaatctt agaatatgca aaactgagga aaaaaatggc cgcttgcacg
     3841 agaataatcg tcggccctgt tgcggcatca atatggtagc taagcaacgt gccgaatacc
     3901 gatgaaaata tcgcaacgcc taaggcaatc agtaacatac tatcaaaccg cttagtcagc
     3961 aggtaagcag tgatccccgg ggtaatcaac attgccacca ctaaaatcac gcccaccact
     4021 tgcattgcac tgataatagt taaagcaagc aaggaaagta aaccataatg caataatcta
     4081 accggtaagc ctgctacttt ggcttgatta acatcaaagc aatagagcaa gaagtctttg
     4141 cgtttcgcca ccatcaccac aaaggtaaag aggcttatga gtaaagtctg aagcaaatcg
     4201 cttttggtta cgcctaatag attaccaaat aaaatatggg ttaaatgctc accggtatta
     4261 aaggcggtaa acagcaagat cccaaaggca aacatacctg aaaacacaat ccccattacc
     4321 gtgtcttctt tcaagcgact attttctttt aaatagccca ccgataaggc acagcctaat
     4381 cctgaaaaaa acgcccctat tgagagtggt aacccggcaa gtgaggaaat caccacaccg
     4441 ggcagaacag cgtgcgaaat tgcatcgccc attaaagacc agcctttcag caccagatag
     4501 caagataaaa ccgcactcac gccagcaact aaaattgcgg taattaacgc aatttgcata
     4561 aattcaaatt gcaacggctc taaaatccaa ttaagcattt tgaacctcca cacggtgcaa
     4621 tttccgcttt tgagtaatca agccatattt aggagcaaag cagaatgcga ataagaaaat
     4681 taaggtttgt aagcacacaa ttaccgcacc ggttgcaccg tctaaaaagt agcttaaata
     4741 tgccccaatc cctgatgtca gcgtgccgat aagcattgcg atcagcacta atctagggaa
     4801 acggtcggta agtaaataag cagttgctcc cggcgtgacg accatcgcaa taaccaaaat
     4861 tgccccaacc gtttgcagag ccactactac acaggcactt aataaggtaa agaaaatcac
     4921 tttatagcgt aatggcgaaa gcccgactga caatgcgtgg tgttcgtcaa aaaagacgag
     4981 tagcaaatcc ttccaaaata ggattaaacc cagtaacgaa atcgcaataa tcagtaccac
     5041 ctgccacaag tcatcatcag caatgcctaa aatatttccc attacaatcg aattaacatc
     5101 aaccgatgtt ggattgaggg aaacaataaa cataccaagc gcaaaaaaag tcgtgaaaat
     5161 aaagccgata accgcatctt ctttaatttt cgtcaggctt tttacccaaa gaatcgataa
     5221 tgccgccaaa atcccggaaa aaaacgcacc aaaggcgtag ggcaatttta gtgcataagc
     5281 gatggcaaca cctggcacta cagcgtgtga taaggcatca ccaatcaaag accagccttt
     5341 taacatcaaa aaggcggaaa gaaaagcaca aactaacccc acgcccatac tgacaaaaat
     5401 cgctttttgc atatagttgt aggtaaaagg ctctaataaa agatcaagca taaaatccta
     5461 acaagttgtt gataatagtt cgcatatact atcatataaa ctccttttct tgtatggatt
     5521 aaacttaaat atctacttta aattgataag gatcaggata gtaataacga aaaccaagct
     5581 cttggcaaat tttgtctgct tttatcagcc ttacaagcgg ttgattttct tcagaaaaat
     5641 gcaaatccgc taacccaaaa cgttttgcca tttcactata ataatcttta cggcttgggt
     5701 gctgttcggc acataaatga aaaatacgct gcccgttcgg ctgctccaac agcaatgaaa
     5761 tggctgcaat acagtcctct aaatgcacta aattgaccgg ctgccctgct ccactcaagt
     5821 tctgttttcc cgccaaataa aaaaccgggt gccgtttttt gcccaccaag ccagctaaac
     5881 gcaaaatatc acaatgaatt ggctggctca gcaaccaatt ttccattttt actaataggt
     5941 tagcagaatc aaccactgca ttttcatcaa aaacgcccga tttcattggc aaaaccgaag
     6001 tcgagctggt gaaaaccaga tgtttcaagc ccttttctat tgcaagcgaa actaatgttt
     6061 gaataccgca accgtaattt tcagggcgaa tttggctaag gggcaaggca atcactaacg
     6121 catcagcagc aagtaattgc tcgatttcgc ttgtcactgc taacgcattt aaatctagag
     6181 gataacattc tatcgctaat tctccgaccg ttcgcttagt acctgcaaca cgccagccct
     6241 tattttgtaa tgcttcagct aaaggtagtc cgagccagcc aagccctaaa atggtaattt
     6301 ttttcatcat ttacgtttct caagattaaa attggaatga ggggaaattc aggtacaaaa
     6361 aaagcacctc gtggtgctat ctattttatt tctagattgg agcgggaaac gaggctcgaa
     6421 ctcgcgaccc cgaccttggc aaggtcgtgc tctaccaact gagctattcc cgcaaatttt
     6481 aaattgttga ttttctaaat ggtgcccgag gccagacttg aactggcacg ccccgaaagg
     6541 cgagggattt taaatccctt gcgtctaccg attccgccac tcgggcagca cgatatagaa
     6601 aaattggagc gggaaacgag gctcgaactc gcgaccccga ccttggcaag gtcgtgctct
     6661 accaactgag ctattcccgc atttaaaaac gctacgaacc tcgtagagtc tcaacaggtg
     6721 catattctat ggatttcaga tttaatgtca aataaatttg taggaaatct gtaaaaaatc
     6781 gtttaattgg tgaaaaataa cgctttttgc aaatttttca tcaaatttga ccgcttgcag
     6841 ccgccttatt tgttgaaatc ataatcagca aatttccgac aaatatcaat tacaactttt
     6901 gtggcttttt ccatcgtatc aaccgaaata aactcaaatc gtccgtggaa attttcgccg
     6961 ccggtaaata aattcgggca aggcaagccc ataaatgaaa ggcgtgagcc atcagtaccg
     7021 ccacggatcg gttctaaatt cggctcaatg ccttgttcac gcattgcgtt ttcggcaatt
     7081 tcaaccaagt agccgtaatc gtccagcact tcacgcatat tgcgatattg ctcgacaatc
     7141 tcgacttttc cgcaatgttc gccgtaaatc tgttgcatct ctgccagcgt atcattcagc
     7201 attttgccga atgcagctaa ttcatcacgc tcaaagctac gtaaaatata gtgaatttcc
     7261 gctttatcaa ttccaccctc aatgccgtgc aacataataa agccttcacg cccttcgctg
     7321 gtggcagggg ttaaatgggg aggcagacgg tgttggaact cgcaagctcg ctctaaggcg
     7381 ttgatcatct tgccctttgc cgtgccgggg tgaacgctac gcccgaagaa cgtaacggtc
     7441 gctgcatcgg cattgaaatt ttcatattgc aattcgccca gaggcccgcc atcaaaggta
     7501 aaggcgacat cggcaccgaa tgcgtttaca tcaaaatgat ctgcgcctcg accgatctct
     7561 tcatcggtgg taaagccgat gcggatcttg ccgtgcggaa tatgcggatt ggcttgtaaa
     7621 tactcgatag ccgagagaat aatcgcaatg ccggatttgt cgtctgcgcc aagcaaagag
     7681 gtgccgtcag tggtgactaa ggtgtcgcca atcagcttgt ttaaattcgg gaaatccgtt
     7741 ggcgaaagat aatcgccact gccgtttagc aaaatattgc cgccttgata agcctcaatc
     7801 acctgtggtt tcacgttttc accattaaaa tcgggcgaag tatcaacgtg ggcaatcagc
     7861 ccaagcaccg gcagggtttt gtcaatattg gcaggcaagc tggcgaacag atagccgttg
     7921 gggtcaagat aaatctcgct tagccccatc gcctctactt ccgttttcag cagatgaagc
     7981 aaatcccact gctgttgcga gcttggcaca gtttggcttt tcggatctga agttgtgtga
     8041 atttgggtgt aacgtagtaa acggttaaga agggattgtt tcattgtttt tccttactat
     8101 agtttagtgt aaccaattct ccaatttcag atcaggtacc attttaaatg cctgatcact
     8161 agaaactaaa atacactctt cagcaagagc gtgactagca atcatttgat cctgcacgcc
     8221 cattactttg ccatttttct ccatctctgc ccgtaacttt ccataaagtt cagcacaacg
     8281 ataattccaa tctaaaacct ttacactcga taaaaaataa tctaaaaatt gagaaagctg
     8341 cccattattt cttttcgcca caccataaac caattcagca gcagttacag atgaaataca
     8401 aagcctctca ggattaatgg acttcaattt cgccaccaca tttgcatttc cacgaaaaaa
     8461 atagcttaca gtattcgtat ctaacatata catttaagct acctcaaaag gatcccgttg
     8521 ctcaaaggat tggtttctct cttttgtatc taaaaatgtt tcatcacata caacagcagg
     8581 caatagctca aacaatcgtt gccaatgctc ggtatttctc gatctcaatg ataataaaat
     8641 atcgccattt tcttttttag aaacatagac ttgctctgca tcaaactcaa attcaaccgg
     8701 taaacgcact gcttggttcc gcccgttacg gaataatctc gcaatttttt ccatcttact
     8761 ttaccctccg atagatagtg tatatgccaa agtatatgcc tattttatac aactggcaag
     8821 ataacccatt ctcaaatact caataacata ctgatttcaa atcataatat taccaactaa
     8881 tagtcggttt acgtttctgc tcaacgcaat ctttcaaata aagattgatc aacgtttggt
     8941 aaggcaaatt cacctcttcg gcaagttgtt taaaatagct gataacatcg tcttcaatcc
     9001 gaatagtaac cacacttttg ctttttagcc cttttgcgta agggtttttc actgcattag
     9061 aaaaatcgta ttcatctctc atttaatgta ctcctttata ttgcccactt tcgcgttttg
     9121 ttgccaaacg tgctgaaata atccgaatgt tggtatttct ctcgcaatgc acaaccacaa
     9181 gtagattatc tttattgcta cgcccgagta gcaaaaaacg ctcttcccta gatgagtgat
     9241 ctggatccgg gattaacatc gcattattat cataaaatac gcttaccgcc tcgataaaac
     9301 taactccgtg tttttgttga ttacgaagag ctttctcact atcccattca aaaccattaa
     9361 tttcttccat tgccagttta ctccttttta attgtaaata aaatatattt acatctattt
     9421 ttttaagtta taaacagcct agatgaaatt actggattcg caataaacaa aaacgatttt
     9481 tacgatacag atcgcaaaaa tcgtttttca agattgacaa ccttaggagg ctttatccgc
     9541 ccacaacctc ccttagcaaa ttttccacaa attctaaccg cttgcggttg tcttcgagtg
     9601 ctaagcggaa tttgaacttc accgcccctt caaaactgta caccgctggt tgtttttgga
     9661 ttaaggcgat aaacttcatt gggtcgggct gggctgtcgg tttaaattca agataaccgc
     9721 cgtgaatgcc ggcatcgatt ttcttaatcc cgagcgtttg tgccgacaag cgaagttggg
     9781 ttatcgcaaa caggtttttg gttgcctctg ggagcaagcc gaagcgatcg atcagctcca
     9841 ctttcaagtc gttcaggctt tgcagatttt ccgagcttgc gatccgcttg tagaacgaca
     9901 gacgcatatt cacgtcaggc agataatcgt ccggcaataa ggccggtaca cgcaattcaa
     9961 tctccgcttg gtgttgggtg atttcatcga ggctcggttc tcgcccttct tgcaaagctt
    10021 tgaccgcatt ttcgagcaag tccatataga gcgaaaaacc gatgctttca atctgtccgc
    10081 tctgctccga accgagcaat tcgcctgcac cacgaatttc taaatcgtgg gtcgccaacg
    10141 caaaaccggc cccgagatta tcaatggtac tcatcgcctc caagcgttgc tcggcatctt
    10201 tggtgagcgt tttcgggtgc ggtgtgagca tataggcgta ggcttggtgg tgcgagcgtc
    10261 cgacccgtcc acgcagttgg tgcagttgtg ccagcccgaa tttgtccgcc cgttcgataa
    10321 taatggtatt ggcagtcggc acgtcaatcc ccgtttcaat aatggtggag caaaccagca
    10381 ggttaaagcg ttgatgatag aaatcgctca tcacccgctc caattcacgc tcacgcatct
    10441 gcccgtgtcc gatcacaatt cttgcctctg gcacgagttc agccaatttc tcggcacaat
    10501 tttcaatggt tgccacatcg ttatggaggt agtaaacctg cccaccacgc agaatttcac
    10561 gcaaaattgc ctcacggatt accatttcat cactttgtcg cacaaaggtt ttgattaaaa
    10621 gtcggcgagc cggcgggctg gcgataatcg agagatcacg cattccgttg agtgccatat
    10681 tcagcgttct tggaattggc gtggcggtga gggtcagaat atccacattg gcacgcagtt
    10741 gtttgatttt ctctttttgg cgtacgccga aacggtgttc ttcatcaatc actaaaagcc
    10801 caagatcacg gaacgctaca tcgtcttgca acagtttgtg cgtgccgacc aaaatatcca
    10861 ctttgccctc cgccacattt tgcaaaatcg ttttctgctc tttggcggtt ttaaagcgag
    10921 acagcacttc cacattcaca gggtaattgg cgaaacggtc tttgaaattc tcataatgct
    10981 gttgggcgag caaggtagtt ggggcaagaa taaccacctg tttatggttc atcactgcca
    11041 agaaagtcgc tcgaatggcc acttcggttt tgccgaagcc gacatcgcca cacaccaatc
    11101 tatccatcgc tttggcttgg cacatatcgc taattacggc attgatggca attttctgat
    11161 cgtccgtttc ctcataaggg aaagtggcac taaactgatc aaattccgct ttatcgtagg
    11221 caaacgcaaa accggtttgg ctttctcgtt tggcataaac atcaagcaat tctgccgcca
    11281 catcacggat tttttccgct gctttttggc gggttttcgc ccacgcttca ctgcctaatt
    11341 tatgtagcgg cgcagtttca tccgccccac cgatataacg gctgattaaa tggagcgagg
    11401 caaccggcac atagagtttg gcatcgttag cataatgtag cacgagatat tcggctttga
    11461 tcccaccagc gtccagcacg gttaagccac cgtaacgccc cacgccgttt tccaaatgca
    11521 ccaccgcctg tccgattttg agttctgcta aattacggat taaggtatca ggattgacgg
    11581 ctttgcggtt tttctcacgc cgtgtttgca cacgttcgcc cagcaggtcg gtttcgcaga
    11641 tgatggcaag gttgcgggcg ggcacaggac ccgcccctac gtagttatta tcattttcgc
    11701 catttgtatt taattcatca tcgtagggac gggtcccgtg cccgcccgtt tccaccacaa
    11761 acccttgatc aagcggtgaa ataatcaggg aaaatggcaa accttgtgct tcatctaatg
    11821 aattgacctg cttcggcttc accccaagcg gagcaagcaa atccagcaag gtttctcttc
    11881 gcccttcgct ctccaccgaa aacagaatgt tgccgtcaaa tttttggcgg aattgctgga
    11941 aagcagaaaa cggctctttg gcagaggatt gaatagcaat atccggcaag ttagccacat
    12001 ttgcattcat tttcgctgct gatttacgga ttttctccga agttatcgtt aaacggggat
    12061 agcctttcag ccagcgattt acctcatcaa tcgcaaacca gagatcactc ggcggcagta
    12121 gcggtcgcat cggatccact cggtggcttt catagcggtt ttgggtatct tggtgaaatt
    12181 gttcagcttt ttgctgaata tcggcgaaag tgataaacag cgtttgggca gggaaatagt
    12241 caaacagact tgccatttcc tcaaaaaaca acggctgcca atactcaatc cctgcattta
    12301 aaatgccttt gctgacttgc tgataaatat gctccggctc acggcggatt tcaccgaatt
    12361 tttcacggaa tttggctcta aaatgctcga tcccgttgct atcagtcggg aactcgtgtg
    12421 ccggcagtaa attaatttcg gcaatttccg ttttggtgcg ttggttatcc acatcaaaag
    12481 tgcggatact gtcgatctca tcatcgaaaa aatcgaggcg aaacggctct tctgctccca
    12541 tcgggaatag gtctaaaatc gagccacgca cggcgtattc accatattcc aacacctgtt
    12601 ccaccgcccg atagccggca ttttccagtt gtaaccgcag tttttgaatc gaaaaacggt
    12661 cgcctttttt aatcaacagc acattgttag cgagataatt cggcgggcag accttctgca
    12721 ttaaggtgtt gatcggcaac agcaaaatct gctgtcgccc ttgttgcagt tcaaacaggg
    12781 cagaaagtcg ggcggagata atgtcttggt gcggcgaaaa attgtcataa ggcaaggttt
    12841 cccaatcggg gaacagttgc actggcagcc ctgcaaactg aggcaaggct ttttccaagc
    12901 gtaacgccgt gcgggtgtcg ggtgtgacaa ccaccgtcaa gccgtaaaag gctcgggcag
    12961 cttggctgat cgcaagggta tcggaatgcc cgacaaggtt accgagggtt tgatgatctt
    13021 gaaaattgcc gtcagatttc ggcagattaa gtgaaattaa agacatacaa gcggtctgtt
    13081 ttaaataaaa aattgcaaat tgttgcttag tttactaaag cacggctgat tgtgcaaaat
    13141 aagcggagaa attatgttat ctagatcgca ttgcgaaaaa attctgataa aatgttcccc
    13201 ttttttaact cttactcaca catattatga aaaataaaat tttaggaagt gcattaatga
    13261 ttgcaggcac taccattggt gcaggaatgc ttgcaatgcc actcacctct gcaggaatgg
    13321 gttttggggc aaccgcatta ctcttagtcg gattatgggc tttattggcc tacaccggtt
    13381 tattatttat ggaagtttat caaaccgctc cgcaaaaaga tgttggagtg gcaagccttg
    13441 ccgagcaata ctttggctta atcgggcgtg tattagccac tttcagtttg ctcgtactac
    13501 tttatgccct acttgcggct tatattaccg gtggtggttc actgttagcc ggtgtaatgc
    13561 ctgaaatggc agatgctgat atgaaactga aaatcagcat tttaatcttc actgcggtat
    13621 taggtacatt tgtggtagtc ggcgtgaaat cggttgatgg tttaacccga gtactgtttt
    13681 tgggaaaaat tgttgctttt attgccgtgt tgctgatgat gctgcctaaa gcgaagctgg
    13741 aaaacttgac agcaattcca ttagataact tactcattat ttctgctata cccattttct
    13801 tcactgcgtt cggtttccac gttattatgg gaacaattaa tagctattta gacgcagata
    13861 tcggcaaaat tcgtaaatct atttatatcg ggacggcaat tccgctagtg gcttatttat
    13921 tgtggcagct cgctacacac ggggtattaa gccaaaatga attcaccaca attttgacac
    13981 aagatccgac cttaaacggc ttggtgaaag ccactagcca gattaccggt agtacgattt
    14041 taggcgaaat ggttcgctta ttctcagtgc ttgcattgat tacctcattt ttaggggttt
    14101 cgatgggaat ttttgaaggc gtgggcgatt tgttaaaacg cttaaatcta ccgactaacc
    14161 gtttatggct gaccatcgcc acctttacac cgccaattct gttcgcttta ttctatccga
    14221 acggctttat taaggcatta ggttacgccg gtttactctt tgcgttctat ggtatgattt
    14281 tacctatcgg cttagcgtgg aaagcacgtc gccaatatcc gaatttacct taccgtgtga
    14341 ttggtggtaa tttggcatta gtggttgcgt taattgccgg tattatcatt atggtcattc
    14401 cgtttttaat tcaggctggc tatttaccgc aagcggtagg ctaatattga aaagggctac
    14461 gattcaatat cgtagccctt tctataagtt acaagcggtc atttttcgat gactttttac
    14521 agattagcca atcaactgat acagcgcctt aatttgatgc tcttttaatg ccccgccaat
    14581 tttctctctg ccgacaaaaa tcttaaacat tgcgttgcct tttttattaa tgaaaatcag
    14641 tgaaacagta cgttttccca taaaaggacg atccaacaaa taaattttgg cacaattttc
    14701 gtagcgtaga tgcccttgta agcctccgcc ctctttatgt tcgaaattgt aaaatccacg
    14761 agaaattgaa ccgcttggga gctttcccac aaactcaata atggtatctt ccgtatgcga
    14821 aatcagcgta atcgcatcgt cccattcgtg gatttgctgt agcacttcgg caaaacgttc
    14881 cccttcggtt acttttagca tttcagccgg taaattcagc attacctctt ccagcgtgca
    14941 ttgatatttt gccgctaaca tttctaaaat ttgccccgga ttttcggcta attcattgcg
    15001 taaggcggtt tgttgttcga ttgatatcat taaatgttcc tttaagtaaa gagagtttct
    15061 tagctctcta agtaaatttg taaattagaa acggtattca aaattagccg agaagttacg
    15121 tccaggttca taatagcgtt gtaatccagg atagccaccg taagttgcat tttcacgtac
    15181 tccaacagaa ttaacgattc cacctgttgt atttaaacca cgtaaagtat cccaagtatg
    15241 gtatttacgg ttaaacaaat tataaatacc ggcacgtaat gtaatattct cagttggttt
    15301 atagaaaccg tataaatcca caacaaaggc tttagcattt aagtgcttcc aggtatctaa
    15361 acctgtctcg tgagaatatt cagtacaacg aatgtcatat tcatcccccc aataagggta
    15421 atacggattt ggcgttctat cctctttaag gcatttttcc ggtaatgttt ttaaatattt
    15481 tgcatctttc gcctttttag cccccaagaa tgtgaagcga gaaaatactc cccatttacc
    15541 ttcaggttgt tcataatcta agccaactac ggctttaatc ggctgaatag aaagtaaatc
    15601 tgccccgtta gacatactac ctttgctgta accgaaggct ccaaatagct tccagccttc
    15661 aggtattggc atagctgaat ttaaattcca tttaccactc acttctagcc cgtagatttt
    15721 cgcagaatca atattttgca tttgctgtac cgggcgccaa aactctctac catatgcttg
    15781 gtaaacatcc caggtttctt gctcccataa aaaatcttta tatttagtat ggtggaaatt
    15841 aactgagagc agcccaacat tgccactacc ttgcaaactt aaattttggc ttaaactacg
    15901 ttccgctttt aggtttggat tggacatcca agctcctgca gcattatcac ggtaatcaaa
    15961 atacatttct gatgcatttg gaatacggaa gcctgtccca atgttatatc ctactttcca
    16021 tgcctcagtc agatgttttt ctaaaccggt aacccaagtt agttgattaa atttcgcatt
    16081 gtcagttttt acgcagttac gacaaacaag accattgagt tcttgttgtt catacttcgc
    16141 ccaatcataa cgaatgccta gcgttgcaat ccaatcatgc gttaaatcaa tcttatcgtg
    16201 caatgaaaaa gtgtgctgtt tcgttttaat tgggtacatc atcgtagaat cgggagaatt
    16261 tacccaaaca ccggataaat aaaccgagtc cttatgtaat acatcgaaat ctctctctgc
    16321 agtagaggct ttgaaagata gctgatgagt ccatttacca aattctaatg cttggctgtc
    16381 taaacggaaa tttaagcgtt tcaattcagt attaaaaata cgaatattat tgtcacttgg
    16441 ttttctttgt ttagcagggc tccagtctgt tgcatcttca gcgcgtgtac cttcatagtt
    16501 ataagcagat gtttcagtat cttgataatc tgcatctatc ttcgctagag atatccattt
    16561 tgactctggg aaatactcat aaaaaacatt tactgtatca cgtttactac ggtcttccgc
    16621 ttcacgccaa aaagaagtaa tagtaacggc tgaatcttcg ataatataat ttttattatt
    16681 ttgcccactg taagaaacac caacgcggtg attatcatta aatcgataag caaatttggc
    16741 taaataatta tgatgattat gagtagaatc atcaggagtt tgtttactac tgcgtaaaga
    16801 gcgagtttgt agagaatctt caggaagtgt ataacctcct gcacttttca tttcatgccc
    16861 atggcgattt gaataaacca atatcgcctc agctttctca cctaaatatc caacaccgaa
    16921 tgtattcaac cattcattat tacgagtacc atatcctgtg cgataaaaag caccaaattt
    16981 attaccgtta cgaacaatat cataaggctc aagcgtccga taattaactc cgccgcctaa
    17041 attaccacta ccttgattga aagaatctgc acctttagat acttcaatag tacgagctaa
    17101 ttccggatct atagattggc gagatgtatt taaattacca tagcgtttat aaagggaatt
    17161 ttcttctgaa tcaggaaaag cgagacacca tcaatactta ttcctacacg gttgtcttcc
    17221 actccacgaa tagcaaatcc tttttgatgt ctaccttggt taacaatgcc aacatcaggg
    17281 ctataacgaa ctaaatctcg attattttga atcaactctt gctgaattat ctctttattt
    17341 ttcttttcta tagaagcctt cacatcttct ttagcaacaa catttacttc agataattcc
    17401 gctgttgttt cttccgcata ggtagcttgt gaagacaaaa tgctactaac gcttaaagcc
    17461 aatatagtcg ggcacaattt tttagacttt attgaataag aggtaaacac catgattctc
    17521 cctagataga tttttaatat actttattat taataagatg tattatcagt tacatcacat
    17581 ttatagtcaa taatgattct catatggatt gaaagttttc actctttata gtaatctaaa
    17641 aaaacactat ttaaattgag gtattttatg acaaccaacc gtcaagaggt cttacaaaac
    17701 cgtttaggtc cagaaattga agaattaaaa caacaaatca aaactataat gcttgcaacc
    17761 atagataaag atggtgtacc gaatgtgagc tatgcccctt ttgtaattaa taacggcgaa
    17821 tatcaagtct taatcactac tattgcccgt cacgctcgta atttacaaga ggtgccaaaa
    17881 gtctctttaa tgctaattga ggatgaaagt aagagccgtc aaatttttgc ccgtcgtcgc
    17941 ttaacctttg acgcaacagt gcgaatgatt gaacgtactg atgaggaatg gaataatagc
    18001 attgcagcac ttaaagctcg tcacggcgat ttagttgatg aactgtcaaa tatgcaagat
    18061 ttcaagctct ttagctttaa gccaacggca ggcttatttg taaaaggatt tggtaaagcc
    18121 tttgatgttg gtgttgatga cttaattaat gtcgttcatt tagaccaagg ccaccaaact
    18181 gcctaattgc gaaataaact cacggctata aataatccta tttatagccg tttttattgc
    18241 gacaagcggt caaatttttt ggaaaattta ccgctatttt agtacaataa cgacactatt
    18301 ctatgagcta aacgcaacta aaaaaaggaa atcctatgca acctaaagcg aaactcagaa
    18361 aagattatcg agctcccgat ttcactatta ctgatattta tcttgacttc caacttgacc
    18421 cagatcgcac ttttgtcacc tcaaaactaa ctgtcgtgcg taaaaatcct gaggcgacaa
    18481 cacttcgttt agacggtcat agtttcgatt tcctttcgct taaatataac ggcgagccgt
    18541 tttccgcctt tcaaaaagat gatgaatctt taaccttaaa tttagccgat gtgcctgccg
    18601 agcggttcga gcttgaaatt gaaaccgcat taaatccggc acaaaacacc tcgttacaag
    18661 gtttgtataa atcgggcgac gggttttgca cccagtgtga ggctgaaggt ttccgccaga
    18721 ttacctatat gctcgaccgc cctgatgtac ttgcaaaata tacgacaaaa atcaccgcta
    18781 gtaagagcaa atacccgtat ctgctttcta acggcaacca cattgcccaa ggcgacttgc
    18841 acgatggcag acactgggtg gaatggcaag atccgttctt taaaccaagc tatttatttg
    18901 ccttggttgc gggggatttt gacttactcc aagataaatt catcaccaaa agcggacgtg
    18961 aagtcacgct tgaaatttat gtcgatcgtg gaaatttaga ccgtgcacct tgggcgatgg
    19021 agagcttaaa acgttcaatg aaatgggatg aagagcgttt cggtttggaa tacgatttag
    19081 atatttatat gattgttgcc gttgatttct tcaatatggg agcaatggaa aacaaagggt
    19141 taaatatttt caattccaaa tttgtattgg caaaaccgga aaccgcaacc gatacggatt
    19201 atttagatat tgaagcggtg attgcccacg aatacttcca taattggacg ggcaaccgca
    19261 ttacctgccg tgattggttc caactaagct taaaagaggg cttaaccgtc ttccgtgatc
    19321 aggaatttac ctccgattta tggtctcgtt cggcaaaacg gattgaagat gtgcgtttac
    19381 tgcgtaccgt acaatttgcc gaagatgcca gcccgatggc tcacccgatt cgcccggaaa
    19441 aagtgattga aatgaataat ttctacaccg tgactgtgta tgaaaaaggg gcggaaatta
    19501 ttcgtatgat tcacaccctg ttaggcgaag aaaaattcca gcaaggtatg caactttatg
    19561 tggcaagaca cgatggttct gcggcaactt gtgaagattt cgttaaagca atggaagatg
    19621 cttcaggcgt taatcttgaa caattccgcc gttggtatag ccaatccggc acgcctgagc
    19681 tcaccatttc cgatgaatat gatgaaaccc gcaaggcata ccgcttgcat atttcacaaa
    19741 tgacaccggc aacccacgat cagatggata aactcaatct gcatattccg cttaaagtag
    19801 cgttatatgg tgaacaggac ggtaaacgca ttccgttaca atatgaatta ttgaccgtaa
    19861 gcgatgtgtt agatgtaacc gcagaacacc aaacctttga gtttcataat gtaacacaac
    19921 gcccggtgcc tgcattactg tgtgatttct ctgcaccggt acggttagat tacaactata
    19981 ccaccgagca gcttttaacc ttactcaaac acgctgaaaa tgattttgta cgctgggatg
    20041 cagctcaaat gctctatacc aatgaactgc gtgaaaattt aagccgttat cagcaacatc
    20101 aaccactcag cttctcagaa gggttggtga atgccctaac gttcgtgttg gataactcag
    20161 caagcctgcc ggaactaact gcattaaccc tcacattgcc aaaagaaacc gagtttgcag
    20221 aatcgttcaa aaccattgac ccacaaggta ttgcggttgt gcgtgaattt atgcagcatt
    20281 ccattgctca cgccttgcaa gataagttat tagcggtata tcaccaaaac caatgcgggg
    20341 aatatcaagt cgtggctgaa gatattgcta aacgagcctt gcgtaatgct tgcttaagct
    20401 atttagcctt tactgattta ggcaacgcgt tggtgcataa gcattacaat aatgccgata
    20461 atatgactga tacgcttgct gcattacaag ccgcaaccaa agcccagcta agttgccgtg
    20521 atgcattatt agccgatttt gagcaaaaat ggaaacatga tggtttagtg atggataaat
    20581 ggtttatgct acaagccacc cgaccggacg acgatgtgtt atccatcgtg caaaatttaa
    20641 tggaacaccc aagttttaac tttaataacc cgaaccgttt acgttcatta gtaggtgcat
    20701 tctgcggtca aaacccgaaa gccttccacg ccattgacgg ttcaggctat cgtttcttgg
    20761 tagatacgct gattaaactt aacgaaagta acccacaagt tgctgctcga cttattgagc
    20821 cgttaattaa actctcacgc tacgataacc aacgccaaac cttgatgcgt cgtggtctag
    20881 aacgcctgcg tgagctggat aatttagcac gagatctgtt tgagaaaatt gaaaaagcgt
    20941 tagattaaac caagcaatac aagcggtgtc gtttgcaaat ttttttacaa atgacaccgc
    21001 ttgttagtta ataccttacc tcaaaccttt taaacctttc tgagccaaga taatcgctca
    21061 caattacccg ttccaccttt gcagcaggtg agccttgttg taaccaattt tccagttgag
    21121 cgattgtctg ttcatccgct tcagctacca cttctaccga gccgtcatca cgatttctga
    21181 catagccttt tatgcctaat cgattcgctt cctgcaaggt aaaaaaccga aaagcgacac
    21241 cttgaacccg tccgtaaacc gagaataatt ttgcgaccat tcttccccca taaaaatagg
    21301 ctgcttattt ttcaataaac agcccataat gtcttatttc acgatgtaga ggttacgcag
    21361 taaaatatca tcttgcggat ctttaccctc atagcctttc acgtaaggtt tcaccaaacg
    21421 tgggtttaca tagttataaa tcggaataat cgcataatct ttggctaact gctcctctgc
    21481 ttttgcataa gcagctgcac gaccagctgc gtctgtcgct ttgtaagatt ctgctaccgc
    21541 atcatcataa gcttggctct tataaaacgc agtattgttg ctggagttcg ataagaaata
    21601 gttcacaaag gtggttgctt ggttatagtc tgccgaccaa cctgcacgag aaacatcata
    21661 atttgcattg cggcgggtat ctaagaatgt tttccactct tggttttcta atttcacatc
    21721 aacaatgccg tctgtgcctt gtttccataa tgatgaaact gcaatcgcaa ttttcttgtg
    21781 gttgtcgttg gtattataaa gaatagtaaa ttttaacggg ttcgctttac tgtaaccggc
    21841 ttcttccaat aatttcaacg ctttggcttt tctatctgcc attgaatctt tggaataagc
    21901 aggttgctgg attttttcac cctcgtgaat ataaggcggt gtaaatacat aagttggtgt
    21961 ttgaccttgt cctagcactt tatcggtaat aatggtgcga tctaaagcta agtttaacgc
    22021 ctcacgcact ttcacattat caaacggtgc tcgtttatgg ttaatttcat agtaataagt
    22081 agaaagggtt cttgccgtaa acacttcgtt tggaatctct tttttcaagg ttgcaaactg
    22141 ctccggtgga agagcatagt tggtcatatc caaatcaccg gcacggtaac gtgaaacatc
    22201 agttgcggca ttagcaatgg ctaagaaagt cgctttatta atcacggttt ctttatcatt
    22261 ccaataattt ttattacgct caaacacgat tttttcatta ataacgtgat cggctaaggt
    22321 ataagccccg tttccaacca gattgccttt ttgcacccac gcatcgccgt gtttctcaac
    22381 ggttgctttg tgtacaggta ataaagaaga gtgtgttgcc agctcaactg catacgggac
    22441 aggttggctt aactgcacct ggaaagtatg atcatcaatc gctttaactg ctagttcctc
    22501 cggttttttc ttgccgtcaa taatatcttg agcattttct acattgagat aagttaaata
    22561 gcttgaataa ggtgaagccg taagtggatt aaccaaacgc tgccaagcaa atacgaaatc
    22621 gtgagcagtt acggcatcac cgtttgacca tttagcgtct tggcgtaatt tgaacgtcca
    22681 cgttttgtaa tccggtgtat tttcccaact ttctgccaca cccggctgaa tattgccgtc
    22741 agaatctttc gttaccaatc cttcaaataa ctgataagca acttgcgatt ccggcacgcc
    22801 ctcaatttta tgtggatcaa aacttgatgg ctcaaaacca ttattaatcg taatttcttg
    22861 tttttctgca agcgttgttc cttcaggcac tttggctgca aacacatttg ccgataagcc
    22921 taacactaat gaggttgtta ataaggaaag cgagaatttt gactgcatat ttgatctcca
    22981 ttgatgaata ttggcttgca accagccgat ttgttctaat taattttttt aagtctaggc
    23041 attattattt tgattgcaag gaattttttt aaaaaatgtg atagatatca cctttcaatg
    23101 caaaaattgc ataaaaaaat cccgaagaaa atagctctat aaactctgat aatggctaga
    23161 taacttgctg taactttcta att
//
LOCUS       DANLZD010000024        22387 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.024, whole genome shotgun sequence.
ACCESSION   DANLZD010000024 DANLZD010000000
VERSION     DANLZD010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22387)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22387)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22387
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.024"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            23..700
                     /locus_tag="PXE26_000696"
     CDS             23..700
                     /locus_tag="PXE26_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5593302.1"
                     /translation="MNSIIRKEWFTASEVAGMGNLPEQPSNVTRRATKNNWLKRQIEG
                     KRGVAFEYHYSSLPISVQQELGFAQTAVKEEPRTLVAAQTADEMERVPFYNVQASAGF
                     GAFNSEVYAPDDYIGLSKRWLDVRGFYLSYLAFITASGDSMYPTISDGDMLLVNRATT
                     QPKDGKIYVFRQGEQLWVKRVQGIMGGIRLISDNKELYSPIDVIFDETLDFEVIGQVV
                     YIGHEMI"
     gene            748..3600
                     /locus_tag="PXE26_000697"
     CDS             748..3600
                     /locus_tag="PXE26_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5593303.1"
                     /translation="MVQAVSFSHFFAIHYFYFFLHKTKGQCTAKPLFSILLFHLFPKN
                     SAKFLLFFYFLVLMVLYSNEVANGKLLITGGTNLNGTLSAEGTSEIILSGRPTPHAYD
                     KVANKEVLIEGDWINRSFNATIFAAKDNGKLEISRNVANINGNFNLTDNATAQIGFTQ
                     GTSQACIRSDRTGVATCNINATLSETDLNSWERTKVAGNVSLADNSTFSLGSKADLTG
                     SITAQESTKVQLNDGSIANLTGLSTTGIFNGANGSTVNLSGVWTTLTNTVVDVLNVAN
                     GSQIHLNTPTATKQNTLTANTLTGNGIFKFVADLTKTASGIVTIKDTASGQFSIEIST
                     NGSAHSAQKIKLFETTNEEDFSLNLANEVRSGEYRYHLLKEGNVYYLNPEKEEEPKIT
                     QKGPSETADPLPEYTGDIEHSEKGPGETADPLPEYTGDIEHSEKGSGETAEPLPKYNG
                     NAHLIASELTAQTNAVLGVTTVLDHVIHSEGTQKQNTLTANTLTGNGIFKFVADLTKT
                     ASDIVTIKDTASGQFSIEISTNGSAHSAQKIKLFETTNEEDFSLNLANEVHSGEYRYH
                     LLKEGNVYYLNPEKEEEPKITQKGPSETADPLPEYTGDIEYSEKGPGETADPLPEYTG
                     DIEHSEKGPGETADPLPEYTGDIEHSEKGSGETAEPLPKYNGNAHLIASELTAQTNAV
                     LGVTTALDHVIHSEGTQNWKVWSKTDYQTTEHRSAGYGFNQDANVIHLGLEKALDNQV
                     TLGMILSQSKARNNFDHYYSGKGRLTMLSMYAKKTWQNGVFVAIDTGFGKASNRLTYQ
                     ANTVKLDRSVFVTGLSIGKAWESANVNIIPSFSARYHHLSSAGNQLVDAKIETNAVDL
                     LALQAGLSINKTLELNGLQIKPEIGSYFVDASHGKLRTRFNNLQIEQQMGRYFKQEAG
                     ISANYRNINAGIQAGFLTGNTLNKQRYISFKVTYEW"
     gene            complement(3675..4511)
                     /locus_tag="PXE26_000698"
     CDS             complement(3675..4511)
                     /locus_tag="PXE26_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HDL5593304.1"
                     /translation="MLPHIYIGTGGYADTDLIGTLYPFGTAKEDFLFVYSQHYDTLEI
                     NSTFHAPIGQKAFEGMVQKAEGRLNFSVKLHQDFSHQRTATLDQAQLFLNALAPFTAE
                     GLLANLFVQFPTQFERMPLNRRYLAELCQWFADYPLAIEFRHPSWHIPAVFDTFAKSS
                     NLIWCNVDYPQNIGLPAFHFFANQRTAYLRLHGRNPNWWKGQSAAERHDYRYSDEELK
                     GLAELLFSRRTEFDRLYLYFENTTKSHAFYNIQTLKGFLAEKGFQIKPVPENLLGQQS
                     LF"
     gene            4619..5494
                     /locus_tag="PXE26_000699"
     CDS             4619..5494
                     /locus_tag="PXE26_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5593305.1"
                     /translation="MWIWFTLLAAVAQAGRNAFQKQLSVNVPVLGVTLARFFYAVPLA
                     SGYLYFLYQYDDNLNIPHFPPLFFVYAIGAGLAQILATSLMVQLFHLKNYAIGVGLAK
                     SEAVWAALLGVLFFGVTISGIGWLGVVLGGVAIFLMTGSGNLRQLSWKTLFLGIASGL
                     CFALTSLWVREASLQLNSHYLLSAAWVLFSVISFEAVILVIYLALLQKETLIKFFRFP
                     KLGMLTSLFSFLGSFGWFNAMSLNHVAFVKTLGQVEIFFILGISYFVFKERLKIQDFI
                     GLILVVIAAILVVLG"
     gene            5630..6070
                     /gene="nudB"
                     /locus_tag="PXE26_000700"
     CDS             5630..6070
                     /gene="nudB"
                     /locus_tag="PXE26_000700"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HDL5593306.1"
                     /translation="MNYKNPHSILVVIYAKNTQRVLMLQRKDDPDFWQSVTGSINIGE
                     TPLEAAEREVSEETGLQTFEQKQPLVDCQKQIEFEIFPHFRYKYAPNITHCVEHWFLL
                     PLDSEQEPILTEHLAYRWVSVEDAVRLTKSPNNAQAIQEYLTSK"
     gene            6083..6823
                     /locus_tag="PXE26_000701"
     CDS             6083..6823
                     /locus_tag="PXE26_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5593307.1"
                     /translation="MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDTS
                     SNPRLRAAVDKALSSNMTRDTINRAIERGVGGGDDTNMETKIYEGYGPGGTAVMVECL
                     SDNANRTISQVRPSFTKCGGNLGTEGSVGYLFSKKGLILVANADEDALTEAAIEAGAD
                     DIQPQEDGSFEIYTAWEDLGSVKDGIEAAGFKIENAEVTMIPSTTVELDAETAPKLLD
                     LINRLEDCDDVQNVYHNGEISDEVAALL"
     gene            6953..7480
                     /locus_tag="PXE26_000702"
     CDS             6953..7480
                     /locus_tag="PXE26_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593308.1"
                     /translation="MKLVKFVPALAATLVLAACSNANTQSAPQQAQDAVTKVAEQATQ
                     QVNEIAGNAPRASGAVKVEKATDGAKSIVYRCQSGKRVTANYVFQGEEAKAVNLLVQS
                     GGKTQKIPTLTRDASNQDSTSFKTDKYSWDLDTGFTLSSNGQSGMLTKYGAKTDTIVA
                     KLCDVDKALTSKLNK"
     gene            7547..8125
                     /gene="ruvC"
                     /locus_tag="PXE26_000703"
     CDS             7547..8125
                     /gene="ruvC"
                     /locus_tag="PXE26_000703"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HDL5593309.1"
                     /translation="MAIILGIDPGSRVTGYGVIRQNGRQLEYLGSGAIRTTAEDLPTR
                     LKRIYAGVSEIITQFQPNMFAIEQVFMAKNPDSALKLGQARGTAIVAAVNHDLPVFEY
                     AARLVKQTVTGIGSADKVQVQDMVTRMLKLSAKPQADAADALAIAITHAHSIQHSLIV
                     AKQSQQNVSSEKEQILALMKTRYSRGRFRLKG"
     gene            complement(8191..9471)
                     /gene="murA"
                     /locus_tag="PXE26_000704"
     CDS             complement(8191..9471)
                     /gene="murA"
                     /locus_tag="PXE26_000704"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HDL5593310.1"
                     /translation="MEKFRVYGPFSLNGTVDISGAKNAALPILFAAILAEKTVTLKNV
                     PDLKDVDTTFKILRQLGVTVEKGSDKGVVHIDASKINNYVAPYELVKTMRASIWALAP
                     LVARFQLGQVSLPGGCTIGARPVDMHISGLEKMGAKIELDEGYVKATSNGRLNGARIY
                     MDKVSVGATLSVMMAGTLAKGTTVIENAAREPEIVDTADFLNAMGAKISGAGTDMITI
                     EGVEHLGGCEHSVVPDRIETGTFLVAAAISGGRITCRNTKADTLDAVIEKLREAGMQV
                     DVTENTITLDSLGRRPKAVNIRTMPHPGFPTDMQAQFTLLNTVAEGTSRITETIFENR
                     FMHIPELIRMGAKAEIEGNIAICYGVEQLKSAEVMATDLRASISLVLAGCIATGETIV
                     DRIYHIDRGYEHIEEKLRQIGARIERFSAPFEGE"
     gene            complement(9581..9841)
                     /locus_tag="PXE26_000705"
     CDS             complement(9581..9841)
                     /locus_tag="PXE26_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HDL5593311.1"
                     /translation="MNPSQIEEILKQALSDATEVHAQGENAHFGVIVVSDSIASLSKV
                     KQQQAVYAPLAEYFTTNAIHALTIKVFSVEKWKTERLLNMVG"
     gene            complement(9874..10197)
                     /locus_tag="PXE26_000706"
     CDS             complement(9874..10197)
                     /locus_tag="PXE26_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HDL5593312.1"
                     /translation="MPQKTLQWDIQQNNESLFVKLSGELTRNTLLPLWKQRASFLSPT
                     GKQSLYWDLKEITRIDSAGFTLLAELLNHYHKIIPNSLINTPDSVRTLAALYDLDGWF
                     EQFII"
     gene            complement(10209..10844)
                     /gene="mlaC"
                     /locus_tag="PXE26_000707"
     CDS             complement(10209..10844)
                     /gene="mlaC"
                     /locus_tag="PXE26_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HDL5593313.1"
                     /translation="MLKNIKKIIVTGLVAVSALFSTTAFAETSPYVLMQQTADKLFGD
                     IKANQAKIKSNPEYLRTIVRNDLMPHVHVKYAGQLVLGKNLSAATDAQKEAFFNAFGQ
                     FVEQSYAQVLTQYQDQSVQIESPKSVDGKSIVSIRVNVSGKGAAQPIKLDFKWRKNSK
                     TGEWQAYDMAAEGVSMVATKQNEWAGVIRQKGIDALIAQVAQSAKQPITLK"
     gene            complement(10890..11414)
                     /gene="mlaD"
                     /locus_tag="PXE26_000708"
     CDS             complement(10890..11414)
                     /gene="mlaD"
                     /locus_tag="PXE26_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HDL5593314.1"
                     /translation="MRQSIKYEFWVGLFVLLGLAALVFLGLRVANVQGFSNEKTYTLY
                     ATFDNIGGLKVRAPIKVGGVVVGRVADISLDNKTYTPKVALAVNESFNQIPDTSSLSI
                     KTSGLLGEQYVALNVGFVIEGETAMMKEGDTFVDTNSAMVLEDLIGQFLYGDKKSDKT
                     EDEKASDSAEPKAE"
     gene            complement(11435..12211)
                     /gene="mlaE"
                     /locus_tag="PXE26_000709"
     CDS             complement(11435..12211)
                     /gene="mlaE"
                     /locus_tag="PXE26_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HDL5593315.1"
                     /translation="MVNFISSIGAVVINFIRTLGRSAFMLWGALIGKPEFRKHTPLLI
                     KQLYVLGVQSLLIIMLSGLFIGMVLGLQGYVVLVDFAAESSLGTLVSLSLLRELGPVV
                     TALLFAGRAGSALTAEIGLMKATEQLSSLEMMAVDPLRRIIAPRFWAGVISMPVLAAI
                     FTAIGIWGGSLVGVDWKGVDGGSFWSVMQNSVNTSDLINGFIKSVIFAFAVVWIALFN
                     GYDCVPTSEGISQATTRTVVNASLVILGLDFILTAIMFGG"
     gene            complement(12204..13007)
                     /gene="mlaF"
                     /locus_tag="PXE26_000710"
     CDS             complement(12204..13007)
                     /gene="mlaF"
                     /locus_tag="PXE26_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid ABC transporter ATP-binding protein
                     MlaF"
                     /protein_id="HDL5593316.1"
                     /translation="MTKTENLVEVKNLTFKRGERVIYDNLNLQVQKGKVTAIMGPSGI
                     GKTTLLRLIGGQILPESGEILFDGRDICKANNKELYEIRQRMGMLFQSGALFTDISTF
                     DNVAFPIREHTRLPEELIRKLVLLKLEAVGLRGAANLMPSELSGGMARRAALARAIAL
                     DPDLIMYDEPFTGQDPISMGVIVELIKELNQALNLTSIVVSHDVKEVLSIADYAYIVA
                     DKRVIAEGTPEILQASEDPQVVQFLAGKADGPVRFHYPAKDYTEELFNG"
     gene            13232..14626
                     /locus_tag="PXE26_000711"
     CDS             13232..14626
                     /locus_tag="PXE26_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Do family serine endopeptidase"
                     /protein_id="HDL5593317.1"
                     /translation="MNKTMKKSFLTAFILGSTIAAMPAYAEATLPTAVNGQAVPSLAP
                     MLEKVRPAVVSIAVEGKTKGDSRRSREIPEEFEFFFGPHADLFGNRSSAPRNFRGVGS
                     GAVINAEKGYVITNNHVIDNADKITVKLEDGREFKAKLVGADPLSDVALIQVEDPKNL
                     TEIKFADSDKLQVGDFTVAIGNPFGLGQTVTSGIISALGRSTGQSDEGYENYIQTDAA
                     VNQGNSGGPLINLNGELIGINTAIISPSGGNAGIAFAIPSNMANSLVTQIIEFGEVKR
                     GMLGIKGGELNADLAKEFNISTQQGAFVSEVLPDSAAAKAGFKAGDVITEINGQKIRS
                     FSELRAKVATSGVGKEIELTYLRDGKEAKAKVTLQSDSEAKVTASNLIPALKGADFNN
                     YNAKGIKGVEISNVEKGSIAEMRSLKKGDIIIGVNRHSVENIADLRKILETKPSVVAL
                     NIVRDGANFYVILQ"
     gene            complement(14678..15439)
                     /locus_tag="PXE26_000712"
     CDS             complement(14678..15439)
                     /locus_tag="PXE26_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C biogenesis protein"
                     /protein_id="HDL5593318.1"
                     /translation="MKTREQLSQENYQQAVKFAQHFADDVRQEFEREAEQRYQFERTQ
                     FEQSVLQNNAQNRPLAKIASLSCVAILLLAMTYYGLSGRYQVVQSGLQQHQDFQQQMS
                     DAHGTSKNERYILSLQNQLRENPNNGDLWYELGQAYALSNDFDSALVCYDNAEKLLGK
                     RAAILGAIATARYYDNGQKMTVEIQAIIEQALQLDKNENASLLLLASDSFLNNNFQQA
                     LDNWRKVLDSNNDSINRRAIIQSMEMARQMLNSQQ"
     gene            complement(15426..15878)
                     /gene="nrfF"
                     /locus_tag="PXE26_000713"
     CDS             complement(15426..15878)
                     /gene="nrfF"
                     /locus_tag="PXE26_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfF"
                     /protein_id="HDL5593319.1"
                     /translation="MRNSIISIGFLQKIRKILPLVFGLLLFVGTVQAEMVDTFQFQNE
                     ADRVRAISLARSLRCLQCQNQNLVESNATAAYNMRIEVYEMVNQGKSNEEIIRIMTER
                     FGSFVNYDPPFTPQTWVLWGLPVGLFSLLFLAILWRTRKNKGNKNENA"
     gene            complement(15868..16401)
                     /locus_tag="PXE26_000714"
     CDS             complement(15868..16401)
                     /locus_tag="PXE26_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HDL5593320.1"
                     /translation="MKKILLLIPLLLLVVIVGFLTVPLMNKDALAPTEDWQGKPFPEF
                     VGKNLLDSNAHLNNNSLPKEPYILNVWVSWCTWCIKEFPILLELKQKGVPIVGLTYSD
                     RPNDALNALKNWGNPFSLIIDDYEKGFLIQTLKVSSAPSSYLIDKHGVVRYQQKGYNP
                     DFAQDFLPKLEALRNEK"
     gene            complement(16398..18302)
                     /gene="nrfE"
                     /locus_tag="PXE26_000715"
     CDS             complement(16398..18302)
                     /gene="nrfE"
                     /locus_tag="PXE26_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfE"
                     /protein_id="HDL5593321.1"
                     /translation="MLPELGYFSLLLAAISAIFQVGFALLGEVRKQYHWLALAPLFTY
                     LQAAFTTFSFSTLAYAFLTDDFSVIYVAAHSNSQLPDFFKFAATWGGHEGSMLFWLTA
                     LVIWSAVFCKFSQKIDRLFANRTLAMLGLIALGFLLFILLVSSPFERGFPPPPEGRDL
                     NPMLQDIGLIFHPPLLYLGYVGFAVSFAMIVAALVSGGMDAAIMRWLRPWTMISWGFL
                     TAGIILGAWWAYYELGWGGWWFWDPVENASLMPWLLGTALVHSLIVSQQRGIFYYWTI
                     LLAIFAFALSLLGTFIVRSGVLTSVHAFAVDPDRGMALLILFFGLSFIALALFAFRAN
                     LWQGKVRFNLLSKETAFLLINGLFSVAASVVLLGTFYPMIFTVMNWGSISVGAPYFNS
                     VFTPLALLLMIVMGFAVVLGWKQISNKQILVKLWLLPIAVGLALGLIYASISQREHFA
                     LQPLPTIFISLAIWIILTHLPYSQKMWQIRPLAMRLAHIGFAVCVIGAMMNSYYGDEI
                     GVRLKPNQAAELAGYTFKYEDYHDLIGPNYTAEQAVFSISRDEQLLATVTPERRYYDV
                     RTMTMAEVGLFHHNLDDIYIVMGDKFGNLEYAFRLHYKPYVQALWLGGMMMVMAALLA
                     LFGYRRENKK"
     gene            complement(18572..19519)
                     /gene="nrfD"
                     /locus_tag="PXE26_000716"
     CDS             complement(18572..19519)
                     /gene="nrfD"
                     /locus_tag="PXE26_000716"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase subunit NrfD"
                     /protein_id="HDL5593322.1"
                     /translation="MNEYVPFQTPNLVWDGTIAIYLFLLGISSGAVQLAIAYRNSGVK
                     MEKPSQNWIIRSAAILGTLPTIIGLLLLIFHLTKPWTFWKLMFNYNFTSVMSMGVMLF
                     QLYMAVLVVWIAIMFKDWIVRYLPVVSGLIDFAEAKLLKPIEFILFVLAAVLGAYTGF
                     LLSALVSYPMLNNPVLPALFLASGASSGIAATFLVILLAGKLSGESHEVHFMHKFEVP
                     IMVTELGLIVAFFVGLHFGGADKSLALTHALNGFWGNVFWIGVMLIGIAIPLVANIFG
                     SHRLKHNVKFIILISVFDLIGVLCLRYFILYAGQLTVAS"
     gene            complement(19519..20196)
                     /gene="nrfC"
                     /locus_tag="PXE26_000717"
     CDS             complement(19519..20196)
                     /gene="nrfC"
                     /locus_tag="PXE26_000717"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase Fe-S protein"
                     /protein_id="HDL5593323.1"
                     /translation="MTCTRRDFVSGAGAIAVVASTGLATSITLATEKEQKKIRYAMVH
                     DETACIGCTACMDACRTTNKVPEGVSRLEIIRSEPFGEFPNVQYEFFRQSCQHCTNAP
                     CVSVCPTGASFIDPETGIIDVHSDLCVGCQYCIAVCPYRVRFIHPEKKSADKCNFCRD
                     TNLAEGKQPACVEACPTKALTFGDMNDPSSDIFHKVKNNPVYRTKTALGTEPNLYHIP
                     FGKGEHR"
     gene            complement(20196..20852)
                     /gene="nrfB"
                     /locus_tag="PXE26_000718"
     CDS             complement(20196..20852)
                     /gene="nrfB"
                     /locus_tag="PXE26_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase pentaheme
                     subunit"
                     /protein_id="HDL5593324.1"
                     /translation="MKKLISKAGRAVALIQAVVFAGFFAISSANALMPEQPKPLWQSE
                     TADDAKVAQDARRDPNKYCTQCHESANATGKPFHHAGKHFQKDVKSPNNGEPLTCISC
                     HGNISESHRKGAKDVMRFNPHGKASNPSLERSVNEQNQVCFACHTAEKLREKFWAHDT
                     HATKIACTNCHEIHPEKDPMKDIPEKDRIKLCTDCHTKIHSGEFKNPEMKATEAKGTK
                     "
     gene            complement(20871..22373)
                     /gene="nrfA"
                     /locus_tag="PXE26_000719"
     CDS             complement(20871..22373)
                     /gene="nrfA"
                     /locus_tag="PXE26_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming nitrite reductase cytochrome
                     c552 subunit"
                     /protein_id="HDL5593325.1"
                     /translation="MKFLIKSLAVATISILGCLQTALAEEAKTESLTDKAVKHEKLGV
                     KIESANHLFAEKYPLQYDSWKSTAKSTDRGSALEADPRYVILWAGYAFAKDYNKPRGH
                     FYAVTDVRDILRTGAPKDENDGPQPMACWTCKGPDVPRLIEEKGERGYFDPKWAKYGA
                     EIVNSIGCADCHDTTSEEFKQGKPALRVARPHVLRALNTVGWKFEDLDKHGKRPAVCA
                     NCHVEYYFKNKTDVTFPWDKGVDVDSIEKYYDEINFTDWTHALSKAPMLKTQHPDFEV
                     WSQGTHGKNGVTCIDCHMPKVKDKDGKVYTDHKIGNPFDQFEATCKTCHEQSKETLEK
                     RVKEYKHEVKEAMIRLEDQLVKAHFEAKAAWEAGATQEEMKEILMAIRHAQWRWDYSA
                     AGHGNHFHAPDVMLRTIATGIDRAADARAKLGVVLAKHGVTTPVAIPDISTKEKAQLA
                     IGLDIPKEQAAKDEFLKTVVPQWEKEARAKGLLPAEEADKPVAAPKAEAK"
BASE COUNT         6728 a         4845 c         4526 g         6288 t
ORIGIN      
        1 acttgaattc aaaaggggtt ttatgaattc tataattaga aaggaatggt ttacggcatc
       61 tgaagtagct ggaatgggaa atttacctga acaaccatca aatgtaacaa gaagagctac
      121 caaaaataat tggctcaaaa gacaaataga gggaaaaagg ggggttgctt ttgaatacca
      181 ctacagctct ctcccaataa gcgtgcagca agagttaggc tttgctcaaa cggcagtaaa
      241 agaagagcct agaacattag tggcagccca aactgcagat gaaatggaac gtgtgccgtt
      301 ttataatgta caggcttcag caggctttgg tgctttcaat agcgaggtgt atgcccctga
      361 tgactatatt gggctaagta aacgatggct agatgtgcgt ggcttctatt tgagctatct
      421 tgcatttatt accgcttcag gtgattcaat gtacccaacc atcagtgatg gcgatatgct
      481 attggtaaac cgagccacca cccagcctaa agacggtaaa atttatgtgt tccgccaagg
      541 cgagcagctt tgggttaaac gtgtgcaagg cattatgggc ggtattcgct taatcagcga
      601 taataaagag ctatacagcc ctattgatgt gatttttgat gaaacgttag attttgaggt
      661 tatcgggcag gttgtgtaca ttggacacga gatgatttaa acgccattta aagctactta
      721 aatcattttt actttttcgt tgttttaatg gtacaagcgg ttagttttag ccattttttc
      781 gcaattcatt atttttactt ttttctacat aaaacaaagg ggcaatgcac cgcaaagccc
      841 ctgttttcaa tacttctgtt tcacttattc ccgaaaaatt ccgccaaatt cctattattc
      901 ttttatttct tagttttaat ggttctatac agtaatgaag tagcaaacgg caaattgctt
      961 atcactgggg gaacgaacct caacggtacg ctttctgcag aaggtacaag cgaaatcatt
     1021 ttatcgggcc gtccaacacc tcatgcctat gataaagtag cgaataaaga agtcctgatt
     1081 gaaggcgact ggatcaaccg atcgttcaac gcaacaatct ttgcagctaa agacaatggc
     1141 aagcttgaaa tcagccgtaa tgttgccaat attaacggta attttaattt aacagataat
     1201 gctaccgctc aaattggttt tacccaaggt acctcacaag catgtattcg ctctgaccgc
     1261 acaggcgtag caacctgtaa tattaacgct actttatcag agactgattt aaacagctgg
     1321 gagagaacca aagtggctgg caatgtctct ttagctgaca attcaacatt ttcgttaggc
     1381 agtaaagcag acttaactgg ctcaattaca gctcaggagt ccactaaggt tcaacttaat
     1441 gatggaagta ttgctaattt aaccggcttg agtacaacag gaatatttaa tggcgccaat
     1501 ggttcaaccg ttaatctttc tggggtatgg acaaccttaa ccaacactgt tgtagatgtc
     1561 ttgaatgtcg caaatggtag ccaaatccat ttaaacactc caactgcaac aaaacagaat
     1621 acgcttaccg ctaataccct cacagggaac ggcatcttta aatttgtcgc tgatctgacg
     1681 aaaacagcga gcggtatagt cacaattaaa gacaccgcaa gcggtcaatt ttcgatagaa
     1741 attagcacaa atggtagcgc ccattcagcc caaaagatta aattatttga aacaacaaat
     1801 gaagaagact tttctcttaa tttagcaaat gaagtgcgct caggcgaata tcgctaccat
     1861 ttactcaaag aagggaatgt gtattacctc aatccagaga aagaggaaga acctaaaatt
     1921 actcaaaaag ggccaagtga aaccgctgac ccattacctg aatacaccgg ggatattgag
     1981 cattctgaaa aagggccggg tgaaactgct gatccgttac ctgaatacac aggcgacatt
     2041 gagcattcag aaaaaggatc gggtgaaacc gctgagccat tacctaaata caatggaaat
     2101 gcacatttga tcgcatccga gttaactgcg caaactaatg ctgtattagg tgtaactaca
     2161 gtattagatc atgtaattca ttcggaaggg acccaaaaac agaatacgct taccgctaat
     2221 accctcacag ggaacggcat atttaaattt gtcgctgatc tgacgaaaac agcgagcgat
     2281 atagtcacaa ttaaagacac cgcaagcggt caattttcga tagaaattag cacaaatggt
     2341 agcgcccatt cagcccaaaa gattaaatta tttgaaacaa caaatgaaga agacttttct
     2401 cttaatttag caaatgaagt gcactcaggc gaatatcgct accatttact caaagaaggg
     2461 aatgtgtatt acctcaatcc agagaaagag gaagaaccta aaattactca aaaagggcca
     2521 agtgaaaccg ctgacccatt acctgaatac accggggata ttgagtattc tgaaaaaggg
     2581 ccgggtgaaa ctgctgatcc gttacctgaa tacacaggag acattgagca ttcggaaaaa
     2641 gggccgggtg aaactgctga tccgttacct gaatacacag gagacattga gcattcagaa
     2701 aaaggatcgg gtgaaaccgc tgagccatta cctaaataca atggaaatgc acatttgatc
     2761 gcatccgagt taactgcgca aactaatgct gtattaggtg taactacagc attagatcat
     2821 gtaattcatt cggaagggac ccaaaattgg aaagtatggt ctaaaacaga ttatcaaacg
     2881 acagagcatc gctctgccgg atatggattt aaccaagatg cgaacgttat ccatctagga
     2941 ttagagaaag ccttagataa tcaggtcaca cttggtatga tattatctca atcaaaagcg
     3001 agaaataatt ttgaccatta ttatagcggt aaaggtcgct taacaatgct atcaatgtat
     3061 gcgaagaaaa catggcaaaa tggtgttttt gttgcgatag ataccggttt tgggaaagca
     3121 agcaatcgct taacttatca agcaaataca gtaaaattag atcgttcagt atttgtaaca
     3181 gggcttagta tcggtaaagc atgggaatct gcaaacgtga atataatccc atcatttagc
     3241 gcccgttatc atcatttatc ttcagcaggt aatcaacttg tagatgcaaa aatcgaaaca
     3301 aacgctgttg atcttctcgc tcttcaagct ggtctgtcaa ttaataaaac gcttgaacta
     3361 aatggcctgc aaataaaacc ggaaataggt agctattttg ttgatgcaag ccatgggaaa
     3421 ttaagaacac gtttcaataa tttacaaata gagcagcaaa tggggcgtta ttttaaacaa
     3481 gaagcaggta tatccgctaa ttatcgcaat ataaacgcag gaattcaggc aggtttctta
     3541 acggggaata cgctaaataa acagcgttat atctcgttca aagttacata tgaatggtaa
     3601 atattgagat taagggctat ccattactaa atggcatggc cctttattta ctcctcaaca
     3661 atgtaaatta cccatcaaaa caaactctgc tgcccaagca aattctccgg cacaggtttg
     3721 atttgaaatc ctttttccgc caaaaagcct tttagggttt gaatattata aaaggcgtgg
     3781 cttttagtgg tgttttcaaa gtagagatag agcctgtcaa attccgttct gcggctaaaa
     3841 agcaattctg ccaagccttt taattcctcg tctgaatagc ggtaatcgtg gcgttctgcc
     3901 gcactctgcc ctttccacca attcgggtta cgaccatgta agcgtaaata agcagtacgt
     3961 tggttggcaa aaaagtgaaa tgccggtaag ccgatatttt gtgggtaatc cacattacac
     4021 caaatcagat tagagctttt cgcaaaggta tcaaacaccg ccggaatatg ccagcttggg
     4081 tggcgaaatt caatcgctaa cggataatcc gcaaaccatt ggcacaactc ggcaaggtaa
     4141 cggcggttaa gtggcatacg ttcaaattga gttgggaact gaacaaataa atttgccaat
     4201 aacccttcag cggtgaacgg agctaacgca ttaagaaata attgtgcttg atctaaagtc
     4261 gccgtgcgtt gatggctgaa atcttgatgc agtttcaccg aaaaattcag ccgaccttcc
     4321 gctttctgca ccattccttc aaaggctttc tgcccgatgg gggcgtggaa tgtgctgtta
     4381 atttccagcg tgtcgtaatg ttggctatag acaaagagaa aatcctcttt tgcagtgccg
     4441 aatgggtaaa gcgtgccgat taaatctgtg tcggcatagc cgccggtgcc aatataaata
     4501 tgagggagca ttgtgtttat tctttcaatt ttttgcaaat tttaatggtt ttttaaccgc
     4561 ttgcaaactg agaataaaag agtaagattt ggctatcttt tcttatttca tcatcattat
     4621 gtggatttgg tttactctgc tggcagccgt ggctcaagcc ggtcgcaatg cctttcaaaa
     4681 gcaattaagc gtcaatgtgc ctgtattggg ggtaacgctc gcccgctttt tctatgctgt
     4741 gccgttggca agcggttatc tctatttttt ataccaatat gacgataacc tcaacattcc
     4801 ccattttcca ccgctgtttt ttgtatatgc tatcggggct gggttggctc aaattctggc
     4861 aacttcgcta atggtgcaac tttttcactt aaaaaattat gcaataggtg tcgggctggc
     4921 gaaaagcgag gcagtatggg cggctttact gggcgtgtta ttttttggtg taaccatcag
     4981 tggcattggc tggcttggcg tggtactagg tggagtggcg attttcttaa tgaccggcag
     5041 cggtaatcta cgccaacttt cgtggaaaac actctttctc ggcatagcca gcggtttatg
     5101 tttcgccctc acatcacttt gggtgcgaga ggcaagcctg caactcaaca gccactattt
     5161 gctttcagcg gcgtgggtac tttttagcgt gattagcttt gaggcagtga tattggttat
     5221 atacctagct cttctccaaa aagagacact gattaaattc tttcgttttc caaaattagg
     5281 tatgttgacc agcctgtttt catttctcgg ctcattcggt tggttcaatg caatgagcct
     5341 gaaccacgtt gcctttgtaa aaacgcttgg acaagtggaa attttcttta ttctcggtat
     5401 ttcctatttt gtgtttaaag aacggcttaa aattcaagat tttatagggc tgattttagt
     5461 agtgattgcc gcaatcttgg tggtgctggg ctagatcgga tttttacgtt ttttatctag
     5521 ctttgtaggg tgggcgtaag cccacgcaaa accaataaat catttatccg tgggcttacg
     5581 cccaccctac gatacctaaa aaaattaaat ttcacatctt agtaataaaa tgaactataa
     5641 aaatcctcat agtatccttg tggtgattta tgctaaaaat acccaacgag tattgatgct
     5701 acaacgcaag gacgatcctg atttttggca atcggtgacc ggttcgatca atattggaga
     5761 aacaccgctg gaagcagcag aacgggaagt gagcgaagaa accggtttgc aaacttttga
     5821 gcaaaaacaa ccgcttgttg attgccaaaa gcagatagaa tttgaaattt tcccgcattt
     5881 tcggtataaa tacgcaccta atatcacaca ttgtgtcgaa cattggtttt tgctgccact
     5941 tgatagtgag caagagccta ttttaaccga acatttggca tatcgttggg tttcagtgga
     6001 agatgcggtt cgactgacta aatctcccaa caatgcccaa gcaatacaag aatatttaac
     6061 atcaaaataa ggaaacaaca gaatggcagg ccatagtaag tgggcaaata ttaaacaccg
     6121 taaagcggca caagatgcac aacgcggtaa aatttttact aaattaattc gtgaattggt
     6181 gactgccgcc aaactcggcg gtggtgatac ctcttccaac cctcgtttgc gtgcggcggt
     6241 ggataaagcg ttatccagca atatgacccg tgataccatc aaccgtgcaa tcgagcgtgg
     6301 tgtaggcggt ggcgatgata ccaatatgga aaccaaaatc tacgaaggtt acggcccggg
     6361 tggtacagca gtgatggtgg aatgtttaag tgataacgct aaccgtacga tttcccaagt
     6421 tcgtccaagt ttcacaaaat gtggcggtaa cctaggtact gagggttcgg taggttattt
     6481 atttagcaaa aaaggcttaa ttttagtggc aaatgccgat gaagatgcct taactgaagc
     6541 tgctattgag gccggtgcgg acgatattca accacaagaa gatggtagct ttgaaattta
     6601 taccgcttgg gaagatttag gctcagtgaa agacggcatt gaggctgcag gctttaaaat
     6661 tgagaatgca gaagtaacaa tgattccatc aactaccgtt gaacttgacg cagaaactgc
     6721 accaaaactt cttgatttaa tcaaccgcct tgaagattgt gatgatgtac aaaacgttta
     6781 tcacaatggt gaaatcagtg acgaagtcgc tgcattactg taataaaaaa atcacgcaaa
     6841 ataagcataa tttaggttat gcttattttt tatgaacttt tttcctatat tactgactaa
     6901 cctaatgtag tttatatgct actactttac tataacattt taaggagagt ctatgaaatt
     6961 agtgaaattt gtccctgccc tagcagcaac tttagtatta gccgcttgct ctaatgcaaa
     7021 cacacaatct gctcctcagc aagctcagga cgctgtgact aaagtggctg aacaagcaac
     7081 acagcaagtg aatgaaattg caggtaatgc acctcgtgca agtggtgcag taaaagtaga
     7141 aaaagcaact gatggtgcaa aatcaattgt atatcgttgc caaagtggta aacgtgtaac
     7201 tgcgaattat gtcttccaag gagaagaggc aaaagcagta aatctattag tccaaagcgg
     7261 cggtaaaaca caaaagatcc caacattaac tcgtgatgcc tcaaaccaag attctacttc
     7321 attcaaaacg gataaatatt cttgggattt agacacaggc tttaccttat catctaatgg
     7381 ccagtcaggt atgctaacca agtatggtgc taaaacagat accatcgttg ctaaattatg
     7441 tgatgtagat aaagcattaa cctcaaaatt aaataaataa tctttcttga ttttactact
     7501 cataagcgag aagataatat cttctcgctt attttattgc acaaagatgg ctattatttt
     7561 aggaattgac cccggctcaa gggtaacagg ttacggtgtg attcgccaaa acgggcgaca
     7621 gctggaatat ttaggaagtg gggctattcg aaccacggct gaagatctgc ctacccgctt
     7681 aaaacggatt tatgcaggcg tgagtgaaat catcactcaa tttcaaccaa atatgttcgc
     7741 catagagcag gtatttatgg caaaaaaccc tgattctgcc ttaaagctcg ggcaggctcg
     7801 aggaacagcg attgtagcag cggttaatca cgatttacct gtgtttgaat atgccgcccg
     7861 attagtcaaa caaaccgtta cgggaattgg ttctgctgat aaagtacaag tgcaagatat
     7921 ggtaacccgt atgcttaaac tctccgccaa accacaagcc gatgcggctg atgcattagc
     7981 cattgcgatt acccacgctc attcaatcca acattcactg attgttgcta agcaaagcca
     8041 gcagaatgtg agtagtgaga aagagcaaat tttagcacta atgaaaaccc gttatagccg
     8101 gggaaggttt aggttaaaag gctaactcaa tataaaatga ccgcttggaa ctaatgtttc
     8161 aagcggtcat tttttgagaa aattttacaa ttactcgcct tcaaaaggag ctgagaaacg
     8221 ttcaattctc gccccaatct gacgtaattt ttcttcgatg tgttcatagc cacggtctat
     8281 gtggtaaatt ctatccacaa tcgtttcacc cgttgcaata cagcctgcca acactaagct
     8341 gatggaagca cgcaagtcag ttgccattac ttctgctgat tttaactgct ctacaccata
     8401 gcaaattgca atattacctt caatttccgc tttggcaccc atacgaatca gctcaggaat
     8461 atgcataaaa cggttttcaa aaatcgtttc tgtaatacgg cttgtgcctt ctgcaactgt
     8521 atttaataag gtaaattgag cttgcatatc agttgggaaa cctgggtgtg gcatagtgcg
     8581 aatgttcact gctttcgggc gacgacctag agaatcaagc gtgatagtat tttccgtcac
     8641 atcaacctgc attccagctt cacgtaattt ttcgatcact gcatcaagag tgtctgcttt
     8701 ggtgttacgg caagtaattc gaccaccgga aatagccgct gccactaaaa atgtaccggt
     8761 ttcaatacga tccggcacta cgctgtgttc gcaaccgcct aaatgctcaa ccccttcaat
     8821 ggtaatcata tcggtacctg caccagaaat tttagctccc atcgcattta agaaatcggc
     8881 agtatctaca atttcaggct cacgagcagc attttcaata acagtagtac cttttgctag
     8941 agtacctgcc atcatcaccg ataaagttgc tcctacgctc actttatcca tatagattct
     9001 tgcaccgttt aaacgaccgt ttgaagttgc tttgacatag ccttcatcaa gctcgatttt
     9061 cgcccccatt ttttcaagac cggaaatgtg catatctacc ggtcttgccc cgatagtaca
     9121 accgcccggt aaagaaactt gcccaagttg gaaccgggca actaatggag ctaacgccca
     9181 aattgaagca cgcattgttt tcactaattc gtaaggtgca acgtaattat tgatcttact
     9241 cgcatcaata tgtaccacgc ctttatcgct acctttttca accgttaccc ctaattggcg
     9301 taagatttta aaagtggtgt ccacatcttt taaatcaggc acatttttta acgtaactgt
     9361 tttttcagcc aaaatagcgg caaataaaat agggagtgcg gcatttttcg cacctgaaat
     9421 atcgacagta ccatttaaag aaaatggacc atacacacga aatttttcca tttgggagat
     9481 cctaaaaaat aataatttgt aggggcgaaa aatttttcgc ccaattttcc aacgtttaca
     9541 aaagagtttg ggcgaatagt gattcgcccc tacatttcat ctatccaacc atatttagca
     9601 aacgctcagt tttccatttt tccacgctga atactttaat ggttaaagcg tgaatcgcat
     9661 tagtagtgaa atactcagct aaaggggcat aaacagcttg ctgttgtttt acttttgaaa
     9721 gagaagcaat gctgtcactt actacaataa cgccaaagtg ggcattctcg ccttgagcgt
     9781 ggacttctgt tgcatcagat aatgcttgtt ttaaaatttc ttcaatttgt gatggattca
     9841 ttctgacttc ctaaaatatg attggtaact cactcaaata ataaattgct caaaccaacc
     9901 gtctaaatcg tataatgcag ccaaagttct gacagaatct ggcgtattaa tcaaactgtt
     9961 tggtatgatt ttatggtaat gattcagtaa ttcagcaagt aaggtaaaac cggcagaatc
    10021 aatccgagtg atttctttta aatcccaata taggctttgt ttccctgttg gagataaaaa
    10081 agaagcacgt tgcttccata aagggagcaa cgtgttacga gttaattcgc ctgatagttt
    10141 cacaaaaaga ctttcgttat tttgctgaat gtcccattgt aatgtttttt gaggcataac
    10201 taaactactt attttaaagt gataggctgt tttgcagatt gtgccacttg tgcaattaag
    10261 gcatcaatcc ctttttgacg aatcacaccc gcccattcgt tttgcttggt tgcaaccata
    10321 cttactcctt cagcggccat atcgtatgct tgccattcac ctgttttgct gtttttacgc
    10381 catttaaaat ctaatttgat cggctgtgca gcacctttac ctgacacgtt tacacgaatg
    10441 cttacgatag atttaccatc caccgatttc gggctttcaa tttgcacact ttgatcttga
    10501 tactgggtta acacctgagc ataagactgc tcaacaaatt gaccaaaagc attaaagaat
    10561 gcctcttttt gtgcatcagt cgcagccgat aagtttttcc ctaacactaa ttggcctgca
    10621 tatttcacgt gaacgtgtgg cattaaatcg ttacgcacaa tggtacgcaa atattcaggg
    10681 tttgatttaa ttttcgcttg atttgcttta atatcgccaa ataatttatc tgcggtttgt
    10741 tgcattaata cataagggct agtttcagca aatgcggtgg ttgaaaataa tgcagaaact
    10801 gccactaagc ctgttacgat aattttttta atgtttttta acattattga tgctctccaa
    10861 aactctaaat tagaggttgt tgtacttaat tactctgctt ttggttcagc agaatcactt
    10921 gctttttcat cttcagtttt atctgacttt ttatcaccat ataagaactg accgattaaa
    10981 tcttctaaca ccattgcaga attggtatct acaaaagtat caccttcttt catcattgca
    11041 gtttcacctt cgattacgaa gccaacattt aacgcaacgt attgctcgcc taataagcct
    11101 gaggttttaa ttgagagcga gctggtatcg ggaatttgat taaaactttc atttaccgct
    11161 aatgccactt tcggggtgta ggttttgtta tcaagtgaaa tatcagccac tcggccaact
    11221 accacaccgc caactttaat aggcgcacga acctttagtc caccaatatt atcaaaagtt
    11281 gcatacaggg tgtaagtttt ctcatttgag aagccctgca catttgctac tcttaagcct
    11341 aaaaagacaa gagctgcaag cccaagtagt acaaataagc ctacccaaaa ttcatattta
    11401 attgattgac gcattgtctg ttcctttcaa aaaatcaacc gccgaacatt atcgcagtta
    11461 aaataaaatc caatcctaaa atcaccagtg aagcatttac caccgttctt gtggtcgctt
    11521 ggctgattcc ttctgaagtc ggtacgcaat cgtagccgtt aaataaggca atccagacca
    11581 ccgcaaaggc aaaaatcaca cttttaataa agccgttaat taaatcgctg gtatttaccg
    11641 agttttgcat taccgaccaa aaactgccac catcaacgcc tttccaatct accccgacta
    11701 atgagccgcc ccaaattccg atagcggtaa aaatagcagc taacaccggc attgaaatca
    11761 cgcctgccca aaagcgagga gcgatgatac gtctaagcgg atcaaccgcc atcatttcaa
    11821 gactggaaag ttgctctgtg gctttcatca gcccgatttc tgcggtcaat gccgaaccgg
    11881 ctcgccctgc aaataataat gcagtaacta caggaccaag ttctcgtaaa agcgagagtg
    11941 aaaccaaagt tcccaagcta ctttcggcgg caaaatcgac caataccaca tagccttgta
    12001 agcctaacac cattccgata aataagcccg acagcataat aattaagagc gattgcactc
    12061 ctaacacata aagctgttta atcagtaacg gggtatgttt tctaaattca ggtttaccga
    12121 ttaatgctcc ccataacata aaagcggaac gccctaatgt acggataaaa ttaatcacca
    12181 ccgccccgat agagctaata aaattaacca ttaaatagct cctccgtata atcttttgct
    12241 ggataatgga accgcaccgg accatcagct ttaccggcta agaattgtac cacttgcgga
    12301 tcttcgcttg cctgtaaaat ttccggtgta ccttcagcaa tcactcgttt atctgccaca
    12361 atataagcat aatcggcaat acttaatact tctttcacat cgtgagacac cacaatggag
    12421 gtcaaattca atgcctgatt taactcttta atcagctcga caatcacacc catactaatc
    12481 ggatcttgcc cggtaaacgg ctcatcatac ataatcagat ccggatctaa cgcaatcgct
    12541 cgagcaaggg cggcacgtct tgccataccg ccggaaagtt cggacggcat taaatttgcc
    12601 gcacctcgca acccaaccgc ctcgagcttc aataacacca atttgcgaat tagctcttcg
    12661 ggtaaacggg tatgctcccg aatcgggaaa gccacattat cgaaggtaga aatatcggta
    12721 aataacgccc ccgattgaaa caacatcccc attcgttggc gaatttcata caactctttg
    12781 ttattggctt tgcaaatatc tctgccatca aataaaattt cgcccgattc aggtaaaatc
    12841 tgcccaccga ttagcctcaa cagggtggtt ttaccaatcc cagaaggccc cataatggca
    12901 gtcactttac ctttctgcac ttgcagattc aggttatcgt aaatcactcg ctcccctcgc
    12961 ttgaaggtca agttttttac ttcaaccaaa ttttccgttt ttgtcatcaa ataggactca
    13021 aattaataaa agtgatattt atggtctatc aaatttgcca gaatgtcaaa aaacttttaa
    13081 taatctgaca aaaatctgcc tttacaagcg gtcagatttg ctaaattttt tgcaaaccgg
    13141 ctgaactgaa aaagaaaggt cttgtcttag ccaatacgag cgttttcact cgtagattat
    13201 aaaaacatag gatatgagga acattcacaa tatgaacaaa acaatgaaaa aatcattttt
    13261 aactgcattc attttaggct caaccattgc cgcaatgccg gcgtatgcag aagcaacatt
    13321 acccacagcc gtaaatgggc aagctgtgcc aagccttgca ccaatgctgg aaaaagttcg
    13381 cccggcggtg gtgagtattg cagtagaagg taaaaccaaa ggcgatagcc gccgcagtcg
    13441 tgaaattccg gaagaatttg aatttttctt cggtcctcac gccgatttat tcggcaaccg
    13501 ctcatcagct ccacgcaatt tccgtggcgt tggatcaggt gcagtcatca atgccgaaaa
    13561 aggttatgtg attaccaata accacgtgat cgacaatgcc gataaaatta ccgtaaaact
    13621 tgaagacgga cgtgaattta aagctaaatt agttggtgct gatccccttt cagatgtggc
    13681 gttaattcaa gttgaagatc caaaaaactt aactgaaatt aaattcgccg attccgataa
    13741 attacaagtg ggcgatttta cagttgcaat cggtaacccg tttggcttag gacaaactgt
    13801 tacttcaggc atcatctcgg cacttggtcg ttcaaccggt caatccgatg aaggctatga
    13861 aaactatatt caaaccgatg cggcagttaa ccaaggtaac tctggcggcc cgttaattaa
    13921 cttaaacggc gaattaatcg gaattaacac cgctattatt tctccaagtg gtggcaatgc
    13981 cggtatcgcc tttgcgattc caagtaatat ggcaaacagc ttggtgactc aaattattga
    14041 gtttggtgaa gtaaaacgtg gaatgttagg cattaaaggc ggtgaattga atgctgacct
    14101 tgctaaagag ttcaatattt ccacccaaca aggggcattt gtaagcgaag tcttaccgga
    14161 ttctgctgct gctaaagccg gctttaaagc aggtgatgtg attactgaaa tcaacggtca
    14221 aaaaatccgt agtttcagcg aattacgagc aaaagtagct acttcaggtg taggtaaaga
    14281 gattgaactt acttacctgc gtgacggcaa agaagccaaa gcaaaagtga ccttacaatc
    14341 ggattctgaa gccaaagtta ctgcttcaaa cctcattccg gcattaaaag gggcagattt
    14401 taacaactac aatgccaaag gcattaaagg ggttgaaatt tctaacgtag aaaaaggctc
    14461 gattgctgaa atgcgaagcc tcaaaaaagg cgatattatc atcggcgtga accgccactc
    14521 ggtagaaaac attgccgatt tacgcaaaat attagaaacc aagccatctg tggttgcact
    14581 caatattgtg cgtgacggtg caaatttcta tgtgattttg caataaacct tttgatccac
    14641 tcaaacaaaa gccgatgaca aaaatcatcg gcttttgtta ttgctgggaa tttaacatct
    14701 gtcgtgccat ttccatactt tggataatcg ctctgcggtt gatagaatca ttattgctat
    14761 ctaacacttt acgccaatta tcgagagctt gttgaaaatt gttatttaaa aagctgtcgg
    14821 aggctagcag gagtaaactg gcattttcat ttttatccaa ctgtagggct tgctcgataa
    14881 tggcttgaat ttcaacggtc attttctgcc cgttatcgta ataacgagcg gtggcaatcg
    14941 cccccaaaat agccgctcgt tttccgagta gcttctcggc attatcgtag caaaccagtg
    15001 ccgaatcaaa atcattgctt aacgcataag cctgccctag ttcgtaccat aaatcaccgt
    15061 tattcgggtt ttctcgaagc tggttttgca gactcaaaat atagcgttca tttttcgatg
    15121 tgccgtgtgc atcgctcatc tgttgttgaa aatcttgatg ttgttgcaaa cctgattgca
    15181 ccacttgata acgtccggaa agcccatagt aagtcattgc taacaacaaa atcgccacgc
    15241 aactcaggct tgcgatttta gcaagcggtc gattttgagc attattttgc aaaacgctct
    15301 gttcaaattg cgttcgttca aattggtaac gttgctctgc ctcacgctca aactcttgtc
    15361 tgacgtcatc tgcaaaatgt tgggcaaatt taaccgcttg ttggtagttt tcttggctta
    15421 attgctcacg cgttttcatt tttgttgcct ttatttttgc gagttcgcca caaaatagct
    15481 agaaataaca ggctaaacaa gccaaccggc aagccccata atacccatgt ctgtggcgtg
    15541 aatggtggat cgtaattcac aaaactgccg aaacgctcgg tcataatgcg gataatttcc
    15601 tcattacttt tcccttgatt caccatttca tacacttcaa ttcgcatatt gtaagccgcc
    15661 gtcgcattgg attcgaccaa attttggttc tgacattgca aacatcgcaa cgaacgagcc
    15721 agtgaaatcg cccgtacccg atccgcctca ttttgaaatt gaaaggtgtc caccatttca
    15781 gcttgaaccg tgccgacaaa tagcaacaag ccaaatacaa gcggtaatat tttgcggatt
    15841 ttttgcaaaa agccgatgga aattatgcta tttctcattt ctgagagcct ctaatttggg
    15901 taggaaatcc tgtgcaaaat cagggttgta acccttttgt tggtaacgca ctacaccgtg
    15961 tttatcaatc aaataactgg aaggtgcaga agagactttc agggtttgga tcaaaaagcc
    16021 tttttcgtaa tcatcaataa ttaaactaaa cggatttccc cagtttttca atgcgttgag
    16081 ggcatcattt gggcggtcgc tataagttaa gccgacaatc ggcacgcctt tttgttttag
    16141 ttccaacaaa atcgggaact ctttaatgca ccaagtacac cagctcaccc acacattgag
    16201 aatataaggc tctttcggca agctgttgtt atttaaatgc gcgttactat caagtaagtt
    16261 cttgcctaca aactctggaa acggcttgcc ctgccaatct tcagtgggag caagggcatc
    16321 tttattcatt aacggcacag tcaaaaagcc aacaataact acaagtaaca ggagcggaat
    16381 aagtaacagg atttttttca ttttttgttt tctctacgat aaccgaataa tgccaacagg
    16441 gcggccatta ccatcatcat accacctaac cataaggctt gcacataagg cttatagtgc
    16501 aaacggaagg catattctaa attgccgaac ttatccccca tcacaatata aatatcgtct
    16561 aaattgtggt ggaaaagccc tacttctgcc attgtcatcg ttcttacatc ataatagcgt
    16621 ctttccggtg tgacggttgc cagcaactgt tcatctcggc tgatagaaaa aacggcttgc
    16681 tcggcggtgt agttcggacc gatgagatcg tgataatctt catatttaaa ggtataaccg
    16741 gcaagttccg ctgcttgatt cggctttaac cgcacgccga tttcatcgcc gtaataactg
    16801 ttcatcattg ccccaatcac gcaaaccgca aagccgatat gggctaaccg catcgcaagc
    16861 ggtcgaattt gccacatttt ttgcgaatag ggcaaatgag tgagaataat ccagatcgca
    16921 aggctgataa atatggtggg taacggctgc aaagcaaaat gctctctttg cgagatggag
    16981 gcataaatca accctaacgc taaaccgact gcaatcggca gcaaccaaag ttttaccaat
    17041 atctgcttat ttgaaatctg tttccagccc agcaccaccg caaagcccat tactatcatt
    17101 aacagtaacg ctagtggcgt gaatacgcta ttgaaatagg gggcccccac tgaaatcgat
    17161 ccccaattca tcactgtgaa gatcatcggg tagaaagtcc ccagcaatac cacagaagca
    17221 gccacactaa ataagccgtt aatcaataaa aatgccgttt ctttagaaag taagttgaaa
    17281 cgcactttgc cttgccagag attcgctcgg aatgcaaaca gagcaagggc aatgaaactt
    17341 aagccgaaga ataagatcag cagtgccatt cctctgtcgg gatcgaccgc aaaggcatga
    17401 accgaggtca gtacacccga acgaacaata aacgtgccta ataggcttaa agcaaaggcg
    17461 aaaatggcaa gtagaatcgt ccaataatag aaaatgccac gctgttggct cacaattaaa
    17521 ctatgcacca atgcggtgcc aagtagccaa ggcattaggg aggcattttc caccggatcc
    17581 caaaaccacc agccacccca gccgagttcg taatatgccc accacgcccc taaaataatg
    17641 ccggcggtga gaaatcccca cgaaatcatc gtccacggac gaagccaacg cataatcgca
    17701 gcgtccattc cgcctgaaac gagggcggcg acaatcattg caaagctcac cgcaaagccg
    17761 acatagccca agtagagcaa aggcgggtga aagatgagcc caatatcttg caacattggg
    17821 ttgagatctc gcccttcagg tggtggtgga aagccacgtt caaatgggct ggaaaccaat
    17881 agaatgaaaa gtagaaaacc tagtgcaatt agccctaaca tcgctaaggt tcggttggca
    17941 aacaagcggt caattttttg cgaaaatttg caaaataccg cagaccaaat cacaagagcg
    18001 gtgagccaaa acagcattga gccttcgtgt ccgccccaag tggcggcaaa tttaaaaaaa
    18061 tcggggagct ggctgttgga atgagcggca acgtagataa ccgaaaaatc atcggttaga
    18121 aaagcataag ctaaggtaga aaaggaaaat gtggtaaaag cagcttgcaa ataagtgaaa
    18181 agcggagcca atgccagcca atgatattgc ttgcgaactt cgcctagaag tgcaaaacca
    18241 acttgaaaaa tggcactaat tgcagccaat aaaagtgaaa aatagccgag ttccggtagc
    18301 ataaaaaatc caaaaaatga ccgcttgtga atgtaaaaaa agccctctcc acttgtggga
    18361 gagggacaga tttttcttcg ttcagaagaa aaatcaggga gagggaaatt aaataatttt
    18421 gctaaaaata acaatactcc ctctctctga aaaatatttc tgaacgaaat atttttcggt
    18481 ctcaatactc gctacgctcg ctccttcgga gccgttggca aagccaacgt tcaaatgtaa
    18541 acatttgtcc cacaagggga gagagtatat cctaacttgc aaccgttagt tgccctgcat
    18601 aaaggataaa gtaacgcaag cagagtacac cgattaagtc gaaaacggaa attaagataa
    18661 taaatttcac gttatgtttc aagcggtggc taccaaaaat attggcaaca agcggaatcg
    18721 caataccgat taacattacg cctatccaga acacattccc ccagaagccg ttaagtgcat
    18781 gggttaaagc gagcgattta tctgctccac cgaagtgtaa gcccacaaag aacgctacaa
    18841 ttaagcctaa ttcggttacc ataatcggca cttcaaattt gtgcataaag tggacttcgt
    18901 ggctttcacc ggataacttg cctgcgagta aaatcactag gaaagttgct gcaatacctg
    18961 acgatgcccc tgatgccaag aacaatgccg gtaacacagg gttattcagc attggataac
    19021 tcactaacgc cgagagtaag aaaccggtgt aagcaccaag tacagcagcc aatacgaata
    19081 agataaattc aattggtttt aacagcttcg cttcggcaaa atcgatcaaa ccagagacca
    19141 caggtagata ccgaacaatc caatctttaa acattatggc gatccaaacc accaatactg
    19201 ccatataaag ttggaataac attaccccca tcgacattac tgaggtaaag ttatagttga
    19261 acattaattt ccagaatgtc caaggtttgg ttaagtggaa aatcagtaac agtaagccga
    19321 taatggttgg taatgtgcca agaatagccg cactacgaat aatccagttt tggcttggtt
    19381 tttccatttt gacaccgcta ttacggtaag caatcgctaa ctgaaccgca cctgatgaaa
    19441 taccaagtag gaataagtaa atagcgatag tgccatccca aacaaggttt ggggtttgga
    19501 aaggtacata ttcattcatt atctatgttc tcctttacca aatggaatgt gatataaatt
    19561 cggctccgtg cctaatgccg ttttggtgcg ataaaccgga ttatttttca ctttatggaa
    19621 aatatcgcta cttggatcat tcatatcacc aaaggttaaa gctttagtcg gacaagcctc
    19681 tacacaagca ggctgtttgc cttctgcaag attggtatct cggcaaaagt tacatttatc
    19741 cgccgatttt ttctcagggt gaataaaacg tacacgatac gggcaaaccg caatacagta
    19801 ttggcaaccg acacacaaat ctgagtgtac atcaataatc ccggtttcag gatcgataaa
    19861 tgaagcaccg gtcgggcaaa cactcacaca aggtgcattg gtacagtgtt ggcaagattg
    19921 gcggaaaaac tcatattgta cgttcggaaa ctcaccgaaa ggctcactac ggataatttc
    19981 taaacgagaa accccttccg gcactttgtt ggtggtgcga caagcgtcca tacaagccgt
    20041 acagccgata caggcagttt catcatgaac catcgcatag cggattttct tttgttcttt
    20101 ctcagtagca agagttatgg aggtggcaag ccctgtactt gccacaactg cgatagcacc
    20161 tgcccctgag acgaaatctc tacgggtgca agtcattatt ttgttccttt tgcttctgtg
    20221 gctttcattt caggattttt aaattcgcct gaatgaattt tggtatgaca atccgtacaa
    20281 agtttaatgc gatctttttc aggaatgtct ttcatcggat ctttttccgg gtgaatttca
    20341 tgacagttgg tacaagcaat tttagttgcg tgcgtgtcgt gagcccagaa tttttcacgc
    20401 aatttctctg ccgtatggca agcaaaacag acttgatttt gctcatttac cgaacgttca
    20461 agtgatgggt tacttgcttt accgtgtggg ttaaaacgca ttacgtcttt tgcccctttg
    20521 cggtggcttt cagaaatatt accgtggcaa cttatacaag tgagtggctc tccattattc
    20581 gggcttttca catctttttg gaaatgtttg cctgcgtgat ggaaaggctt acctgttgcg
    20641 tttgccgatt cgtgacattg agtacaatat ttatttggat cacggcgtgc atcttgagct
    20701 acttttgcat catcagccgt ttctgattgc caaagaggtt ttggctgctc aggcattaac
    20761 gcattcgcac tggaaattgc aaaaaaacct gcaaatacga ccgcttgtat gagggcgact
    20821 gctcgtcctg cttttgagat taattttttc atagttcacc tcaagctaca ttattttgct
    20881 tctgcttttg gtgctgctac cggtttgtct gcttcttctg cgggtaataa acctttagca
    20941 cgagcttctt tttcccattg aggaaccaca gtttttaaga actcatcttt tgctgcttgc
    21001 tctttaggaa tatctaaacc aatagcaagt tgtgctttct ctttagttga gatgtccgga
    21061 atcgccactg gcgttgttac accgtgtttc gctaacacta cacctaattt agcacgggca
    21121 tctgctgcac ggtcgatacc tgttgcgatg gtacgtaaca ttacatcagg tgcgtggaag
    21181 tggttaccgt gacctgccgc agagtaatcc caacgccatt gagcgtgacg aattgccatt
    21241 aagatctctt tcatctcttc ttgagttgct ccagcttccc aagcagcttt cgcttcaaag
    21301 tgagctttca ctaattgatc ttctaagcga atcattgcct cttttacttc gtgtttatac
    21361 tcttttacac gtttttccaa tgtttctttg ctttgttcat gacaagtttt acaagtcgct
    21421 tcaaattggt caaacggatt accgattttg tggtcagtat aaactttgcc gtctttgtct
    21481 ttcacttttg gcatatggca atcaatacag gttacaccat ttttcccatg tgtaccttgt
    21541 gaccaaactt caaaatctgg gtgctgcgtt tttagcatcg gagctttcga taaagcatga
    21601 gtccagtctg taaaattgat ttcatcgtag tatttttcaa tgctatctac atctacacct
    21661 ttatcccaag ggaaagttac atctgtttta tttttgaaat agtactccac atggcagtta
    21721 gcgcacacag cagggcgttt accatgttta tctaaatcct caaacttcca accaaccgta
    21781 ttcaatgcac gtaatacgtg aggacgtgca acacgtagtg caggtttacc ttgtttaaac
    21841 tcttctgatg tcgtgtcatg gcagtctgca caacctattg agtttacaat ttcagcacca
    21901 tatttcgccc atttaggatc aaaatatcct cgctcacctt tctcctcaat taagcgtgga
    21961 acatcagggc ctttacatgt ccaacaagcc ataggttgtg gaccatcatt ttcatcttta
    22021 ggcgcgccgg tgcgcaaaat atcacgcaca tcggtaactg cataaaagtg acctcgtggt
    22081 ttattataat ctttcgcaaa agcatagcct gcccacaaaa taacataacg agggtcagcc
    22141 tctaacgcac ttcctcgatc tgtggatttt gcagttgact tccaagaatc gtattgtagc
    22201 ggatattttt ctgcaaatag gtggtttgca gactcaattt tcacgcctaa tttttcatgc
    22261 ttaactgctt tatctgttaa tgattcagtt ttcgcctctt cagctaaagc agtttgtaaa
    22321 caccccaata ttgaaattgt tgccacagct aggcttttta ttaaaaattt cattttggct
    22381 ctcccaa
//
LOCUS       DANLZD010000025        22110 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.025, whole genome shotgun sequence.
ACCESSION   DANLZD010000025 DANLZD010000000
VERSION     DANLZD010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22110
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.025"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(110..952)
                     /locus_tag="PXE26_000720"
     CDS             complement(110..952)
                     /locus_tag="PXE26_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin family protein"
                     /protein_id="HDL5593326.1"
                     /translation="MKVGLVLEGGGLRGIFTAGVLDVFLDEHIHIDGAIGVSAGALFG
                     VNLPSKQKGRALRYNKKYAKDKRYMGLHSLLTTGNIVNRDFAYYELPSKLDPFDQQAF
                     EDSGMDFWVTVTNVETGEPEYIKIDNVFEQMEAFRATSSMPIVSKIVEIEGKKYLDGG
                     VSDSIPVQKFIEMGYDKIIVVLTRPLEYRKKPSSMWLFKRFYKKYPKLVQRWENRYAE
                     YNQAVEQIIQLNEKQQIFVIRPSRTVKISRLETDVNKIQAMYDLGVEDAKNALAGLRA
                     YLAK"
     gene            1012..1329
                     /locus_tag="PXE26_000721"
     CDS             1012..1329
                     /locus_tag="PXE26_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HDL5593327.1"
                     /translation="MADAEFMDFLLDQLSPISGLRSKKMFGEYCLFFDNKIVAIISKD
                     YRIFVKANPQTLPLFLAENAEQFHYFAKGKVQKMHYWSIPELAIEEADELVKWIRLGL
                     QAV"
     gene            1420..2133
                     /locus_tag="PXE26_000722"
     CDS             1420..2133
                     /locus_tag="PXE26_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease"
                     /protein_id="HDL5593328.1"
                     /translation="MNQKKLVSLIVVIVLAIISQIFSFFDKKEPSKAQEKSTQSSQSH
                     QVSTSSLGNYDVQMKNDRLKQHIVDTDYYTLALSWSPAFCQKQKRNNHGKIPSHLEYQ
                     CGGSADFGWVIHGLWPQSGKARSVDEHPRYCQGDLPMVAEQTIKQYLPESPGATLLQG
                     EWEKHGACAFNQADDYFAKQKELFNQLKLPDTEMSKLALFNWMRANNPHLQNVYLGGS
                     KDELYICYDKAFQPMDCPR"
     gene            2133..2627
                     /locus_tag="PXE26_000723"
     CDS             2133..2627
                     /locus_tag="PXE26_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HDL5593329.1"
                     /translation="MADLRQLKMQVQRQLKRDLERANHYFNTTFTPPSISYAVRGVKA
                     GVAYLERNEVRFNPVLLQENEQAFIRQVVPHELAHILVYQHFGRVQSHGKEWKMMMET
                     VLGVPAEIYHCFDTQSVQQQFSYQCACQTHQLSIRRHNAVMRDKKSYICRLCKTQLHF
                     VEKS"
     gene            2732..4012
                     /locus_tag="PXE26_000724"
     CDS             2732..4012
                     /locus_tag="PXE26_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDL5593330.1"
                     /translation="METIVIVGGGAGGLELATYLGNKLGRKQKAKVVLIDRNATHLWK
                     PLLHEVATGTIDEGTDALSYRAHAKNHSFEFQQGTLVAVDREKKTVSLAPIYNDQNQL
                     LVKERHISYDKLVIAIGSKSNDFGTKGVAENCIFLDGSEQAKDFQKRMMELFLRFSHS
                     ENKDVKIAIVGGGATGIELSAELYHVVKNLNSYGFGKLNRASLKVTLIEAGPRLIPAL
                     PEKVSVSAFHELKKAGVSVRLGTMITEARPDGLMTRLGEKIEADIMVWAAGVKAPEIT
                     REFGFETNRLNQIEIKDTLQTTVDESVFVIGDCASLIQDGKPIPPRAQAAHQMATRCG
                     KNIVALIEGKEMKPFRFNDKGSLLSFSKFGTVGNLMGNLVSGDMFIEGKIARLAYLSL
                     YRMHQVALHGCVKTGLIVLVGQINRFLRPTMKLH"
     gene            complement(4099..5136)
                     /locus_tag="PXE26_000725"
     CDS             complement(4099..5136)
                     /locus_tag="PXE26_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5593331.1"
                     /translation="MNVLKLISLKSILIASGIFLSAQAAQAEGRLTVYCSVQNNVCEE
                     MTKQFSHKYNVETKFIHGGTGTIFGKVKAEASNPQADIWYGGTIEPHFQAGELGLLEA
                     YRSPKQAEILPQFKSLVESEQGKFTSIVYMLVLGLGVNTEKLAKLGIEAPKKWEDLSD
                     PRLKGEVQLPDPRSSGTTYTFMTTLSTLWGEEKTFDYLKKLNNNVSQYVKSTLVTSNL
                     ARGESAVTVGFVHSYATEKEKGAPIEAIIPEGKVGYALGGVSIIKNARNLDNAKLFMD
                     WVLSKEAQEIPWKKHGVYQTPTNINAEVAPQSTKAEALDFVEIDYQKAGSSEEGKRLI
                     DKWLAEIKLAN"
     gene            5358..6056
                     /locus_tag="PXE26_000726"
     CDS             5358..6056
                     /locus_tag="PXE26_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HDL5593332.1"
                     /translation="MENSWKYAFKLITPIFMGYFAAGVAYGMLATNAGMPAWFTIVMS
                     FTVVSGTAQYAAIPFFVSGVGAVSVFLSTLLMSLRFSFYTLNMMEHKPISKAKSLVAI
                     AGLTDEGFAVLSSLPKEQKQALFFKIAVLCVAYWTFSTIVGVLLGDSVANYIPHLDFA
                     LPCLFAILAYEQYKNQKQWKPIVIALIGFLLARQITETSVLLVAILVAIVIVALLPQS
                     SSIKLEKGVENEHK"
     gene            6067..6369
                     /locus_tag="PXE26_000727"
     CDS             6067..6369
                     /locus_tag="PXE26_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HDL5593333.1"
                     /translation="MFAALVLGSQICRFLPEFLPKKVLSSPILQKLNKMLPLVIMLLL
                     LLTSLNFPKNGEGFNLILAQILALIGVLGSYVWLKNTFLSVALGIFGVNVFLSLLG"
     gene            complement(6490..7791)
                     /locus_tag="PXE26_000728"
     CDS             complement(6490..7791)
                     /locus_tag="PXE26_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDL5593334.1"
                     /translation="MSLFKFEERGSNARQEIIAGLTTFLAMVYSVIVVPGMLSQAGFP
                     AESVFIATCLVSGLGSILIGLWANAPMAIGCAISLTAFTAFSLVLGQQVSIPVALGAI
                     FLMGVVFTLISATGIRTWILRNLPSSIAHGAGIGIGLFLLIIAATNVKLVVNSGMDIP
                     VKLGDFTSFPVLVSLIGLAAIIGLEKLKVKGSILWVIIAITIVGLIFDPNVKYTGFFK
                     MPSFGENSQFLNLDIMGALNTAILPVVFALVMTAIFDATGTIRAVAGQAGLLDKDGQI
                     INGDKALTSDSFGSILSGLFGTAPAAVYIESAAGTAVGGKTGLTAVVVGIGFLFMLFF
                     QPLAFLVPSYATAPALMYVGLLMLSNVSKLDFSDFVGAMSGLVCAVFIVLTANIVTGI
                     MLGFATLVIGRLISGEANKLNLGTVIIAIILVAFYAFDLAI"
     gene            complement(7924..8898)
                     /gene="secF"
                     /locus_tag="PXE26_000729"
     CDS             complement(7924..8898)
                     /gene="secF"
                     /locus_tag="PXE26_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HDL5593335.1"
                     /translation="MAIENVQQDVAEIKLPYKLIPFMKYRYVGFIFSLIVTALCIFTI
                     ATKGFNWGLDFTGGTVIETQFSQPADLAKLRTELENSGYGNALVQTTGSQKDLMIRLA
                     ASAGDMSVGNKVMEMIHQKLDPNATIKSIEFVGPNVGEELTQGAIYATLATLAMLLIY
                     VGTRFEWRLAVGGIVALFHDVLVTIGIFSFLQIEIDLTFVAAILSVVGYSLNDSIVVF
                     DRVRENFSKVRRSSSIEIIDISLSQTLSRTLMTSVTTLFVVLALFYLGGPTLHSFSLA
                     LLIGIGFGTYSSIYIAIGVALQLGLKREHMVQPKVEKEGADQDAFIDY"
     gene            complement(8908..10749)
                     /gene="secD"
                     /locus_tag="PXE26_000730"
     CDS             complement(8908..10749)
                     /gene="secD"
                     /locus_tag="PXE26_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HDL5593336.1"
                     /translation="MLNRFPLWKNLMVIFVIAIGALYALPNLYGDDPSVQISGTRGQQ
                     ATPETLSQVQSTLSAMNIQPKSAVLENGSILVRLESSEQQLPAKEKISEALGNNYSVA
                     LNLAPATPQWLSDIGGSPMKRGLDLLGGVRFLMEVDMNTALAKQQDTLQDSLRSDFRK
                     EKLQYQAVKKGENFATEVEFADNDTAEKAVRLVRLSHPTLDILVNDNKVTLTPSAQAL
                     SESRTMAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATA
                     TLEFRLVNTEANVASAAKGIVPADSGLQNTRDGEPVVLRRKPSLGGEHIIDATSGTDE
                     RGLPQVSIRLDTEGGEMMGEITKMAIQKPMATLYTEFKDSGRKDANGKVILEKHQEVI
                     NVATIQTRLGNQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVK
                     QGMEASILGLGLTILFCLAFYKVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGI
                     VLAVGMSVDANVLIYERIKEEIRNGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLY
                     GVGTGPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKKLWI"
     gene            complement(10789..11082)
                     /gene="yajC"
                     /locus_tag="PXE26_000731"
     CDS             complement(10789..11082)
                     /gene="yajC"
                     /locus_tag="PXE26_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDL5593337.1"
                     /translation="MQQGGGMEMIFILIIFGAIFYFMIYRPQAKRQKQQRDLLASLTK
                     GDEVLTSGGLIGKITKVTADNDNIVIALNDTTEVTIKRDFVVAVLPKGSLKSL"
     gene            11283..11840
                     /locus_tag="PXE26_000732"
     CDS             11283..11840
                     /locus_tag="PXE26_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtfJ family protein"
                     /protein_id="HDL5593338.1"
                     /translation="MKKLFAQAVIFGAFFASSAFAHNVQLNQALPAVSVAKDGELAVA
                     GGKVSYKNWHSSSLAGKVRVIHHFAGRSSVKEKNEDLMTAIKNAGFDRSKYQTVTIVN
                     ADDAIVGTGVFVKNSVENGKLDNPHSQVVLDQQGSVKKAWGLKEKESFIAVLDKSGKV
                     QFTSEGKLSAKQIQEVIGLVKTLTQ"
     gene            complement(11881..12849)
                     /locus_tag="PXE26_000733"
     CDS             complement(11881..12849)
                     /locus_tag="PXE26_000733"
                     /EC_number="5.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HDL5593339.1"
                     /translation="MKLFTLENAFLRITLSDVGASWLSCIVKMPNEEREVLVTTSAKN
                     WQKQTAFFGATIGRYANRIANAEYRLNGKTYQLAKNNGEHNLHGGELGADKIVWQLES
                     QSEQAVKFSYFFADGEEGFGGEVKAFVEYRLTENELQISFDAVANQDTPLCLTNHAYF
                     NLQGSETILDHELIINADGYLPVDASGIPNAPLKKVESTSFDFRNAKKIGQDLLADDD
                     QKAVKGYDHSFHLAKNSENPTACLAVEDLKMELRTSMPALQLYTGNWLKGQPNLTKGE
                     YEDYAGVALEPEFFPNSLNQPELLQFGGITKAGEEYHHTISYRFII"
     gene            complement(12975..14138)
                     /gene="galK"
                     /locus_tag="PXE26_000734"
     CDS             complement(12975..14138)
                     /gene="galK"
                     /locus_tag="PXE26_000734"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HDL5593340.1"
                     /translation="MKPQEIALQQFEQHFGYKAERTVFAPGRVNIIGEHTDYNDGFVM
                     PCAINYGTAVSFAKRSDNKWRVFAIDLNQQDEFDLSQAIEPSEQKWANYVRGVVKFIQ
                     AKHPEFKQGADLAITSDVPMSSGLSSSAALEVSIGKTAQLLGDLPLSLPQIALIGQEA
                     ENKFVGCNCGNMDQLTSALGQQDHLVMIDCRSLEITPTPVPQGYSIAIINSNVKHDLV
                     TGEYNSRREQCEFAAHFFGKAKLRDVTAEQFIERASELSEENELAYKRAKHIISENQR
                     VLEAVEALKANDMVKLGELMAQSHDSMRDDFEITCPEVDCLAEIAQQAIGKNGGARMT
                     GGGFGGCVVCLVPNDKVEDLRQAVANNYEKQTGIKETFHVCTASDGVRECPAR"
     gene            complement(14148..15194)
                     /gene="galT"
                     /locus_tag="PXE26_000735"
     CDS             complement(14148..15194)
                     /gene="galT"
                     /locus_tag="PXE26_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HDL5593341.1"
                     /translation="MSEFVLNDHPHRRFNPLKNQWILVSPHRAKRPWQGQQEEIVQDE
                     KPSYDPSCYLCPGNKRITGEQNPNYTKPFVFKNDFSALLPDTPAPIPNDDPLFQISHT
                     QGESRVICFSPDHSKTLPQLSIEEITDVVTVWQEQANELKEHYQWVQIFENKGSMMGC
                     SNPHPHGQIWASNFLPNEIAIEDECQAKYFAQYGSPLLLDYAQRELDKQERIVAETED
                     WIAVVPYWAAWPFETLLLPKAKQFKSITDLNEAEKADLALALKKLTTRYDNLFNISFP
                     YSMGFHFAPFNGKENAHWQLHAHFYPPLLRSATVRKFMVGYEMMAESQRDLTPEQAAE
                     RLNAVSDTKHYKDK"
     gene            15407..16258
                     /locus_tag="PXE26_000736"
     CDS             15407..16258
                     /locus_tag="PXE26_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF817 domain-containing protein"
                     /protein_id="HDL5593342.1"
                     /translation="MERLNKFDAWLMNHKPNARLSGASRLLTEFWFFGLKEARACLFA
                     GLFFIAMFSVPKTGLWGLPRYDILLIFAIVVQIAMVKLGLETWDELKAISLFHLVGFV
                     LEVFKTSSNIQSWAYPDFAYTKLFNVPLFTGFMYAAVGSYIIQAWRLFDLKIKSHLPY
                     WLATLTALMIYLNFFTHHYIGDYRWYIAAFALGLYARTFVFFTPYDITRKMPLLLSFF
                     LIGFFIWLAENIGTFAGIWRYPNQFGAWSMVHMSKWSAWALLVMMTFTIIVHLKHIKQ
                     TVRVSSD"
     gene            complement(16344..17429)
                     /locus_tag="PXE26_000737"
     CDS             complement(16344..17429)
                     /locus_tag="PXE26_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL5593343.1"
                     /translation="MEYRYYITTALVIAVLQLFLFNFAKTVSWLFNLSSKNRKTVGIL
                     TFLVANGLVILHLTRTFALFRIMAFILVLLLFAFFISFFTACIYKIFNGNTTVNRWLK
                     IAYPFAFFGLLGLGYYNAYTPTVVHYSVKLDKPLEKPLRIGMASDLHLGKLFGTKQLD
                     QLAEIFNQQKVDLILLPGDIMDDNTEVYVADKMQPHLAKLKAPLGVYATLGNHDFFGA
                     QETIAKEITDAGITVLWDQTAEINGKFTLIGRNDDLVKNRPSAEQLLQNVNTKLPVIL
                     LDHRPTEIEQHAKLPIDIQVSGHAHKGQVFPASIITKLIYRLHYGYEKIGFGHYFVTS
                     GYGFWGVPMRLGSQSEVMIIDVEGENP"
     gene            complement(17451..18431)
                     /locus_tag="PXE26_000738"
     CDS             complement(17451..18431)
                     /locus_tag="PXE26_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDL5593344.1"
                     /translation="MLFDSIQFSIGVTLPTILLMLFGIFPRRRKFIDDTFCNMASKVV
                     FNFTLPPMIFLNMLKSPLDFSSQINLISTGVGGSILIYLWAEWWAARHIENRRYRCIF
                     TQGTFRTNAAILGIALILNAYGDKALAAASVYISCLVITFNVLAVITLTSSLSEKKVN
                     FGRLILSILRNPLILAVIAGLTFNYFELSHQIPTPLESAGKLMASLTLPLALICTGAS
                     INFKQLKQFNQGVESTINKIVLFSASIRLIFAPIFLLLLGKFVFQLPPMELGIVFVAA
                     SAPVASATYAMTRNYGGDGEAAANLIGITTLGSMFSASIGLFLLRQIGWV"
     gene            complement(18534..19632)
                     /gene="prfB"
                     /locus_tag="PXE26_000739"
     CDS             complement(join(18534..19556,19558..19632))
                     /gene="prfB"
                     /locus_tag="PXE26_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550889.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HDL5593345.1"
                     /translation="MFELNPIKNQLTDLSERTAVIRGYLDFEHKVERLEEVNAELEQP
                     DVWNKPEKAQALGKERAMLEQIVNTIKALEQGIEDVEGLIELAVEAEDQDTFNEAQVE
                     ADELEKKLADLEFKRMFSGPHDSADCYLDLQAGSGGTEAQDWTEMLLRMYLRWAESKG
                     FKAELMEASDGDVAGIKSATVKISGDYAYGWFRTETGIHRLVRKSPFDANNGRHTSFS
                     AAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQN
                     GRSQHQNKDQAMKQLKAKLYELEMSKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK
                     DHRTGVEHRTTQQVLDGDLDKFVEASLKAGL"
     gene            19888..20796
                     /locus_tag="PXE26_000740"
     CDS             19888..20796
                     /locus_tag="PXE26_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HDL5593346.1"
                     /translation="MAKRPSDIDATLLQLEILRRIPKLPAKIDAKSLHQQLLDAGFER
                     DIRTVQRSLKMLCEHFDIECDERSKPFGYSWKIRSEGLALPILNEQQSLLLKLAEQQL
                     KYLLPANLMASMKPFFEQADRMVSGAKDKPEYQWLNKVCSTPTSLPLIPAKIKEEIFN
                     SVSQALFQNKLLKIEYQNQHGKKHQATIMPLAISQQGASIYLVCRYEGFDDNRLLALH
                     RIRKAEISTFSFERPKDFNLQAYQDAGHLGFGNGEKASLTFSISRDAGFHLTETPLAK
                     DQKILEESETHYRIQAIVADNDMLTW"
     gene            21097..21738
                     /locus_tag="PXE26_000741"
     CDS             21097..21738
                     /locus_tag="PXE26_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase 2C domain-containing
                     protein"
                     /protein_id="HDL5593347.1"
                     /translation="MPFQLTFCQQAGNQHQKNQDALFNGKAVYQWQLKNAESYLLDND
                     KVIFGVADGVSSHPRNHLASHYLMALLSQCQSLDSQWLRQAHGDFCEKLAKDYFGASC
                     TFVACELHHNGRGRMVNVGDSRAYKITANGEWQQLSFDHTILAEMKQKGLVKEGSNYA
                     SMYNGLTDCIVADFDADDFRIHIAEFQLEKGESILLCSDGLHEQLAPEAIQAI"
     gene            complement(21722..21886)
                     /locus_tag="PXE26_000742"
     CDS             complement(21722..21886)
                     /locus_tag="PXE26_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593348.1"
                     /translation="MRILSTNATNNVVLITQFHKSPQKNRHTSGAFLPFFCKFADDET
                     GFRIRPKSPE"
     gene            21905..>22110
                     /locus_tag="PXE26_000743"
     CDS             21905..>22110
                     /locus_tag="PXE26_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005637830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HDL5593349.1"
                     /translation="MKNDFHYAAELIRNADGILITAGAGMSVDSGLPDFRSVGGLWNS
                     YPPLKKFNLQFMQIATPLAYQERP"
BASE COUNT         6341 a         4555 c         4696 g         6518 t
ORIGIN      
        1 aaaatgtttg gacaggcaca ggaccggtcc ctataaaatt tgtttggaag tgtttccgtc
       61 tagacgtcta taatatattt tttgaacgtt ttaggcaaat agaatttgtt tatttggcta
      121 aatatgccct taaaccagcc aacgcatttt tggcatcttc tacccctaaa tcgtacattg
      181 cttgtatttt atttacatcc gtttcaaggc gactgatttt gactgttctg cttggacgaa
      241 tcacaaaaat ctgttgtttt tcattgagtt gaataatctg ctcaacggct tgattatatt
      301 ccgcatagcg gttttcccag cgttgcacta atttcggata ttttttataa aaacgtttaa
      361 acagccacat cgagcttggt ttcttacggt attcaagtgg gcgagtaagc accacgataa
      421 ttttgtcata tcccatttca ataaatttct gcaccggaat actgtctgac acaccaccgt
      481 ctaaatattt tttaccctca atttcgacta ttttggatac aatcggcatt gaggaagtag
      541 ctcgaaaggc ttccatttgc tcgaacacat tgtcaatttt gatgtattcg ggctcaccgg
      601 tttcgacatt ggttacagta acccaaaagt ccataccgga atcctcaaag gcttgttggt
      661 caaacggatc cagtttggaa gggagttcat agtaagcaaa atcccgatta acgatattgc
      721 cggtggtaag caagctgtgt aaccccatat accgcttatc tttagcgtat tttttgttgt
      781 atcgcaacgc cctacctttt tgttttgaag gcaaattcac gccaaataac gcaccggctg
      841 aaacaccgat tgctccatct atatgaatat gttcatctaa aaatacatct aacacgccgg
      901 cagtaaaaat acctcgcaaa ccaccgcctt ccagcactaa tccaactttc atatcattct
      961 ccctgtaatt tgtgtattat aacccgaatt atcttgctag gagaaatcac aatggctgat
     1021 gcagaattta tggatttcct gttagatcaa ctaagcccga tttccggttt gcgttcgaaa
     1081 aaaatgtttg gtgaatattg cttgtttttt gataataaaa ttgtcgctat tatcagcaaa
     1141 gattatcgca tttttgtcaa agctaatccg caaaccttgc cgttattctt agctgaaaat
     1201 gccgaacaat ttcactattt tgctaaagga aaagtgcaaa aaatgcacta ctggagcatt
     1261 ccggaattag cgattgaaga agccgatgaa ctggtcaaat ggattcggct aggcttacaa
     1321 gcggtgtaat ttagcgaaaa ttttgtaaaa aaacgctaaa atatgcccgc ttgttagggg
     1381 gggggaccta atatttctat actttaagat tttatattta tgaaccaaaa aaaattagtt
     1441 tctttgattg tcgttattgt gttggcaatc atttctcaaa tttttagctt ttttgataaa
     1501 aaagagcctt caaaagcaca agaaaaatcg acccagagta gtcagtctca tcaagtttca
     1561 acttcatcac tagggaacta tgatgtgcag atgaaaaacg accgtttgaa acagcatatt
     1621 gtagataccg attattacac cttagcgttg tcgtggtcgc cggcgttttg ccaaaaacaa
     1681 aagcgaaata atcacggtaa aattccgtct catttggaat atcaatgtgg tggctcagcg
     1741 gattttggtt gggttattca cggcttatgg ccgcaaagtg gcaaggcaag aagtgttgat
     1801 gaacaccctc gttattgcca aggcgatttg ccgatggtgg cagagcagac gattaagcaa
     1861 tatttacctg aatcgccggg ggcaactttg ttgcaaggcg aatgggaaaa acacggtgct
     1921 tgtgccttta accaagcgga tgattacttc gccaaacaaa aagagctatt taatcagctc
     1981 aaattaccgg ataccgaaat gtctaaatta gcactgttta actggatgcg agccaataac
     2041 cctcatttgc aaaatgtcta tttagggggt agcaaagatg agctgtatat ttgctatgat
     2101 aaagcatttc aaccaatgga ttgcccacgc taatggcaga tcttcgccaa ctgaaaatgc
     2161 aggttcagcg ccaattaaag cgtgatcttg aacgtgcaaa tcactatttt aataccactt
     2221 ttacgccacc aagtattagc tatgcggtgc gtggcgtaaa agccggtgtg gcttatcttg
     2281 aacgcaacga agtacggttt aatcctgtgt tattgcaaga aaatgaacag gcatttatcc
     2341 gccaagttgt gccgcacgaa ctggctcata tcttggttta tcaacatttt gggcgggtac
     2401 aatctcatgg taaagagtgg aaaatgatga tggaaaccgt actgggtgtg ccggcggaaa
     2461 tttaccattg ttttgatacc caaagtgtgc aacagcaatt tagttaccaa tgtgcctgcc
     2521 agactcacca gctttcgatt cgccgacaca atgccgtgat gcgagataaa aaaagctata
     2581 tttgccgttt atgtaaaact caactccatt ttgtagaaaa aagttaatgt ggagaaaagt
     2641 taagagaatg ttacgattta gctagacatt cctgtttaaa cgcctacaat ttgccgtagt
     2701 ttttattttt aattttattt ccggagtatt tatggaaaca attgtaattg taggtggcgg
     2761 tgcaggcggt ttggagcttg caacctatct aggcaacaaa ttagggcgta aacaaaaggc
     2821 aaaagtggtg ctgattgacc gcaatgcaac gcatttatgg aaaccactgt tgcacgaggt
     2881 ggcaaccggt actattgatg agggaactga tgcgttaagc tatcgggctc acgctaaaaa
     2941 tcatagtttt gaatttcagc aaggtacgct ggtggcggta gatagagaga agaaaacggt
     3001 ttcactcgcc ccgatttata atgatcaaaa ccaacttctc gttaaagaac gccatatcag
     3061 ttatgacaaa ttagtgatcg cgatcggcag taaatccaat gattttggca ccaaaggggt
     3121 tgcagaaaat tgcattttct tagatggctc agagcaagca aaagatttcc aaaaacgaat
     3181 gatggagctg tttttacgtt tttcacatag tgaaaataaa gatgtaaaaa ttgcgattgt
     3241 ggggggggga gcaacaggta ttgagctttc agcggagctt taccacgtgg tgaaaaattt
     3301 aaattcttac ggctttggta aattaaaccg tgccagcttg aaagtcactt taattgaggc
     3361 aggccctcgt ttgattccgg cattaccgga gaaagtgtcg gtttctgctt tccacgaatt
     3421 gaaaaaagcg ggtgtttcgg tgcgtttagg tacgatgatt accgaagctc gtccagatgg
     3481 gctaatgacc cgtttaggtg agaaaattga ggcggatatt atggtttggg cggctggcgt
     3541 gaaagcccct gaaattaccc gtgaatttgg ttttgaaact aaccgcttga accaaattga
     3601 gattaaagac acgctacaaa ccaccgttga tgagtcagtg tttgtcattg gcgattgtgc
     3661 atcattaatt caagatggca agccaattcc acccagagca caagcagccc accaaatggc
     3721 aacccgatgt ggtaaaaata ttgtggcatt gatagaagga aaagagatga agccgtttcg
     3781 atttaacgat aaaggctcac tgctttcctt ctcaaaattc ggcacggtgg gtaatttaat
     3841 ggggaattta gtgagcggtg atatgtttat tgaaggtaaa attgcccgct tggcttacct
     3901 ctcgctttat cgaatgcacc aagtggcatt acacggctgt gtcaaaaccg gcttgattgt
     3961 gttggtaggg caaattaacc gtttcttaag accaacaatg aaactacatt aaacaaaaat
     4021 ccgcatcaaa tgatgcggat tttttatggc aaaataacaa gcggttattt tcttgcctat
     4081 ttttgcaaat actcacgcct agtttgctaa tttaatttcc gccaaccatt tatcaattaa
     4141 gcgtttgccc tcttcgctgg aacctgcttt ttggtaatca atttccacaa agtctaacgc
     4201 ttcggctttg gttgattgtg gagcaacttc ggcgttgatg tttgttgggg tttggtaaac
     4261 accgtgtttt ttccaaggaa tttcctgtgc ttcttttgaa agcacccaat ccataaagag
     4321 tttggcgtta tctaaattac gggcattttt gataatgctg acaccgccta acgcatagcc
     4381 cactttacct tccggaataa tggcttcaat aggcgcacct ttttcttttt cagtggcata
     4441 actatgtaca aagcctaccg taaccgcact ttcaccacga gcaagattgc tggtgactag
     4501 ggtgcttttc acatattgcg aaacgttatt gttgagtttt ttcagataat caaaggtttt
     4561 ctcttcgccc cataaggttg aaagagtggt cataaacgta taagtcgtgc cggagctacg
     4621 aggatcaggc agttgtactt caccttttaa gcgaggatct gataaatctt cccatttttt
     4681 cggtgcctca atgcctagtt tggcgagttt ttcggtattc acgcctaacc ctaatacaag
     4741 catataaacg atagaggtaa atttaccttg ttcactttca actaaggatt taaattgtgg
     4801 cagaatttca gcttgttttg gtgaacggta ggcttccagt aagcctaatt cgcctgcttg
     4861 aaagtgaggt tcaatcgtgc cgccatacca aatatctgcc tgagggttcg atgcttccgc
     4921 ttttactttt ccgaaaattg taccggttcc gccgtgaatg aatttagttt cgacattata
     4981 tttgtgtgaa aattgcttgg tcatttcttc acaaacatta ttttgtaccg agcaataaac
     5041 agttaaacga ccttctgctt gtgctgcttg agctgataag aaaatgccag aggcgattaa
     5101 gatcgatttt aatgagatta atttgagtac gttcatcact ttcctgaaaa cataaaataa
     5161 aaggtagtga agtctagcat ttcaaagcgc tggttgaaaa tagttaattg caatgaagta
     5221 gggcaattgt gcctattact ttaatattta ccaactattt gcaagtttta gcaaaaaata
     5281 accgcttgta gtagctcttg ctattttgtc aaaattcaga ataataaatg cctttagtct
     5341 aatgttaaat tttagttatg gaaaatagtt ggaaatatgc ttttaaatta atcacgccga
     5401 tttttatggg ctattttgcg gcaggggttg cttacggaat gcttgccacc aatgccggaa
     5461 tgcctgcgtg gtttacgatt gtaatgagtt ttaccgtggt atcggggacg gcacaatatg
     5521 cagcgattcc attttttgtc tccggtgttg gggcggtgtc ggtctttctc agtacgcttt
     5581 taatgagtct acgttttagt ttttacacct taaatatgat ggagcataag ccgatatcca
     5641 aagcgaaaag tctggtcgct attgcaggtt taactgatga aggctttgcg gtgttatctt
     5701 cattaccgaa agagcaaaag caagcattat tctttaaaat cgctgtgcta tgtgtggctt
     5761 attggacatt ttccacgatt gtcggtgtgt tgttaggcga ttcagtggcg aactatattc
     5821 cgcatttgga ttttgctctg ccttgtttgt ttgcaatttt agcctatgag caatacaaaa
     5881 accaaaaaca atggaaaccg attgtgattg cgttaatcgg atttttactt gctcgtcaga
     5941 ttaccgaaac cagcgtgtta ttggtggcaa ttttagtagc gattgtcatt gtggctttat
     6001 tacctcaatc ttcttcaatc aaactagaga aaggagtaga aaatgagcac aaatgatact
     6061 ttgataatgt ttgcagcatt agtgctcggc tcgcaaattt gtcgtttttt gccggaattt
     6121 ttaccgaaaa aggtgttatc ttcgcccatt ttgcaaaaat taaacaaaat gttaccgctt
     6181 gtgattatgc ttttattgct tttaacgagc ctaaactttc ctaaaaacgg ggaaggcttt
     6241 aacttaatat tggcacaaat tctggcttta ataggcgtat taggtagcta tgtttggctt
     6301 aaaaatacct ttttaagcgt agcgttgggg attttcggtg tgaatgtatt tttatccctg
     6361 ctaggataaa taccaaaggt cattttatag gagcgaaaca ccttcgctca atcattaaca
     6421 gatgtggggc gaaaaatttt tcgcccctta tttatcacaa gcggtctttt tctttcaatt
     6481 ttttgcaaat taaatcgcta aatcaaacgc atagaaggca actaaaataa tcgcaataat
     6541 tactgtacct aggtttaatt tattggcttc gcctgaaatt aagcgaccaa tcacaagggt
     6601 ggcgaaacct agcataatgc ctgtcacaat gttggcggtt aatacgatga acaccgcaca
     6661 gactaaacct gacattgcac ctacaaaatc gctgaaatct aatttagaga cattacttag
     6721 cattaataag cccacataca ttaatgccgg tgcggtggca tagcttggta ctaagaatgc
     6781 aagaggttgg aagaacagca taaataagaa accgatacca accactacag cggttaaacc
     6841 tgttttaccg ccaacggctg tacctgctgc cgattcaata tacactgccg ctggtgctgt
     6901 accaaataag cccgataaaa ttgatccgaa tgagtcagaa gttagggctt tatcgccatt
     6961 gataatttgt ccgtctttat ctaataaacc ggcttgccct gcaaccgcac ggatagtacc
     7021 tgttgcatca aaaatagcgg tcattactaa cgcaaacact accggtaaaa tggcggtatt
     7081 taatgctccc ataatatcaa gatttaggaa ttgcgaattt tcaccaaaac tcggcatttt
     7141 gaaaaagcct gtgtatttta cgttagggtc aaaaattaaa cctacgatgg taatagcaat
     7201 aatgacccat aaaatactgc cttttacttt cagcttttct aacccgataa tggcggctag
     7261 accgattaat gacactaaaa ccggaaatga agtgaagtcc cctaatttaa ccggaatatc
     7321 cataccgcta ttgaccacta atttaacgtt agtggcggca ataatcagta agaataaacc
     7381 aataccaatt ccagcaccgt gggcaatgct gcttggcaaa ttacgtaaaa tccaagtacg
     7441 aataccggta gcagaaatca aggtaaatac tacgcccatt aagaaaatcg ccccgagtgc
     7501 aacaggaata gaaacttgtt gccctaatac taagctaaag gcagtaaaag cagtaagtga
     7561 aatcgcacaa ccgattgcca ttggggcatt tgcccataaa ccgattaaga tagagccgag
     7621 acctgaaact aaacaggtgg caataaatac cgattcggca ggaaagcctg cttggcttag
     7681 cattcccggc acaacgatga cggaataaac catggctaaa aaggtagtta aaccggcgat
     7741 gatttcttga cgagcgtttg aaccacgctc ctcaaattta aataacgaca taagaacctc
     7801 aaaagaagaa aatgaaaggg gaaattttag gatgcggaat tttacagaaa tttaaaataa
     7861 ttagcaaacg tttgcgtaaa aagtgaaaga aaagcaggaa taaatcctgc ttttgtttga
     7921 tggttagtaa tcgatgaaag cgtcttgatc tgccccttcc ttttcaactt taggctgaac
     7981 catatgttca cgttttagcc caagttgtag tgccacacca attgcaatgt agatggatga
     8041 ataagtaccg aaaccgatac cgatcaataa tgcaagtgag aaactatgaa gcgttggacc
     8101 acctagatag aataaggcta gtaccacaaa gagggtggtt actgatgtca ttaaagtacg
     8161 cgaaagtgtt tggctcaagg aaatatcgat aatttcaatt gagctggagc gacgaacttt
     8221 agaaaagttt tcacgtacac ggtcaaacac cacaattgag tcatttaacg agtaaccgac
     8281 aacagataaa atcgctgcta caaaggtcaa gtcaatttca atctgtaaga aagagaagat
     8341 tccgatcgtc actaatacat cgtgaaataa agccacaata ccgcctaccg ctaaacgcca
     8401 ctcaaaacgt gttcccacgt aaataagtag catagcaagt gttgccaaag tggcataaat
     8461 agccccttgg gttagctctt cccccacgtt tgggccaacg aattcaatgc tcttgatagt
     8521 cgcattcgga tctaattttt gatggatcat ctccatcact ttattcccaa cagacatatc
     8581 accggcactg gcggcaagtc ggatcattaa atctttttga ctgcctgtgg tttgcactaa
     8641 ggcattgccg tagccgctat tttcaagctc cgtacgcagt tttgctaaat cagcaggttg
     8701 tgaaaattga gtttcgatta ctgtcccgcc ggtaaaatct aacccccagt taaagccttt
     8761 tgtcgcaata gtaaaaatgc ataaagcagt tacaatcagc gaaaaaatga atccgacata
     8821 gcggtatttc ataaagggga ttaatttata aggcagttta atttctgcta catcttgttg
     8881 tacattttca atagccattt ttccacctta aatccaaagt ttcttcacgc gtttgccacc
     8941 gtaaacccag tttacaagca ttcgagtacc tgtaattgcg gtaaacatag aaataattac
     9001 ccctaatgca agcgttaccg caaagccttt taccggacct gtacctacac cataaagcac
     9061 aagagaagtc aaaatagtgg tgaggttgga gtcaaaaata cttgagaatg cgccattata
     9121 accttcgtgg attgcttgtt gaattgggcg accgttacga atctcttctt tgatccgctc
     9181 gtagattagt acgttggcat caactgacat acccacagca agtacgatac cggcaattcc
     9241 cggcatagta agggttgcac cgattaatga cattaaacca atcgttaaga tcatattcac
     9301 aatcaaggca agagaggcaa atataccaaa tactttataa aaggctagac agaacaggat
     9361 cgttaagcct aagcctaaaa tactagcttc cataccttgt ttaacattat ctgccccaag
     9421 agaagcaccg atagtacgct cttccacaat cacgattgga gcaatcaacg cacctgaacg
     9481 taataatacc gcaaggtttt gagcttccgc tggtgaatta atccctgtaa tctggaattg
     9541 attacctaaa cgggtttgaa tggttgcaac gttaattacc tcttggtgtt tttctaaaat
     9601 gactttaccg ttagcatctt tacgacctga atctttaaat tcggtataaa gtgttgccat
     9661 cggtttttgg attgccattt tagtaatttc acccatcatc tcgccgcctt cggtatcgag
     9721 tcggatactc acttgcggca agccacgctc atcagtgcct gaggttgcat caataatatg
     9781 ttcaccccct aacgaaggtt tacggcgtaa tacaactggc tcgccatcac gggtgttttg
     9841 cagtcctgaa tcagccggca caatgccttt cgccgcagag gccacattgg cttcggtatt
     9901 gactaaccgg aactcaaggg ttgcagttgc ccctaaaagc tctttggcac gagcggtatc
     9961 ttgcacaccc ggtaattcaa ctacgatacg atctgcacct tgacgctgaa tggtcggctc
    10021 agaaacgccc aattcctcaa cacgtttacg caaaatagaa aggttttgtt cgattgccat
    10081 cgtgcgagat tcagaaagag cttgtgctga tggcgttaag gtgactttat tatcatttac
    10141 caaaatatca agcgttgggt gagagagacg cactaaacgc actgcttttt cggcggtatc
    10201 gttatcggca aattcaacct cagttgcaaa attttcgcct tttttgaccg cttgatattg
    10261 caatttttct ttacggaaat cactacgcag gctgtcttgc aaagtgtctt gttgttttgc
    10321 aagcgccgtg ttcatatcca cttccattaa gaaacgaaca ccgccaagca agtccaagcc
    10381 tcgcttcatc gggctaccgc caatgtcaga caaccactgt ggcgttgctg gtgcaaggtt
    10441 taaggcaaca gagtagttat tccccaatgc ttctgagatt ttttctttgg caggcaattg
    10501 ctgttcgctg ctttcgagac gaaccaaaat cgagccattt tctaacacgg cagatttcgg
    10561 ctgaatattc attgctgaaa gtgtggattg cacttgagac agtgtctcag gtgtggcttg
    10621 ttgcccacga gtaccggaaa tttgtaccga aggatcatcg ccatataaat ttggaagggc
    10681 atataaagca ccaatggcga tcacgaagat caccattaaa ttcttccata gagggaaacg
    10741 gtttaacaca ataactcccc gaatgttaaa gttggataag agggttgatt aaagtgattt
    10801 taatgaacct tttggtaaca ccgcaacaac gaaatcacgt ttgatggtca cttcagttgt
    10861 gtcatttaat gcaatcacga tgttatcgtt atcagcggtc actttggtaa ttttaccgat
    10921 taaaccaccg ctggttaata cttcatcgcc ttttgtcaag cttgccagta aatcacgttg
    10981 ttgtttttgg cgttttgcct gaggacgata aatcataaaa tagaaaattg caccgaaaat
    11041 aatcaggata aagatcattt ccattccgcc accttgttgc ataaaaactc cttaaatgtt
    11101 tgagtggtat aaaaataagt gttataaaaa acgcctgtta aaataccata aattcaatga
    11161 attaacgagt agaaaaattc atcgaatgct tttcttttaa acaaaaattt gagtagaatc
    11221 agcactttta gtttaggatt aggttcttgg cgtgttcttg cgctgacaca ataggagaaa
    11281 aaatgaaaaa attattcgct caagcggtta tttttggggc tttttttgca agttccgctt
    11341 ttgctcacaa tgtgcaatta aatcaagcat tacctgctgt ttcggttgca aaagacgggg
    11401 aattggcagt ggcaggtgga aaggttagct ataaaaattg gcattcatca tctctggcag
    11461 gtaaagtccg tgttattcat cattttgccg gtagaagttc ggtgaaagaa aaaaatgaag
    11521 atttgatgac agcaattaaa aatgccggtt ttgatcgctc gaaataccaa acggtgacga
    11581 ttgtaaatgc tgatgatgcg attgtcggca caggggtatt tgtgaaaaat agtgtggaaa
    11641 acggcaaact tgacaatcct cacagccaag tagtgttaga ccagcaaggc agtgtgaaaa
    11701 aagcgtgggg cttaaaagag aaagagagct ttattgcagt gctggataaa tcgggtaagg
    11761 tacaatttac ctctgagggc aaactctctg caaaacagat tcaagaagtg attgggttgg
    11821 tgaaaacatt aacgcaataa ccagtgtttt tatgggcgga ttttgtatcc gcccatcatt
    11881 ctagataata aatcgataac ttatcgtgtg atgatactct tctcctgctt ttgttatccc
    11941 gccaaattgg agtaattcag gctggtttag tgaatttggg aaaaactcag gctctaatgc
    12001 tacaccagcg taatcttcat attcgccttt agtcaaatta ggttgtcctt ttagccagtt
    12061 gccggtgtaa agttgtaatg ctggcatgga ggtgcggagt tccattttta agtcttccac
    12121 ggctaaacaa gcggtcggat tttcactatt ttttgcaaga tgaaaggagt gatcgtaacc
    12181 ttttaccgct ttttggtcgt catcagccaa taaatcttgc ccaatttttt tagcattgcg
    12241 gaagtcaaaa ctggtactct ccactttttt cagtggagca ttaggaatac cgctggcatc
    12301 aaccggtaag tatccgtctg cattaattat cagctcgtga tctaaaatcg tctctgaacc
    12361 ttgcaaatta aaataggcgt gattagttaa gcaaagcggt gtatcttggt tagcaacggc
    12421 atcaaagctg atttgaagct cattctctgt taagcgatac tccacaaaag ctttcacttc
    12481 gccgccaaat ccttcctcgc catctgcaaa aaaataacta aatttgaccg cttgttcgct
    12541 ttggctttca agttgccaca ctattttatc tgccccaagc tcgccaccgt ggagattatg
    12601 ttcaccgtta tttttagcga gctggtaggt tttgccgttt aagcgatatt cggcattggc
    12661 aatgcggtta gcgtaacgcc caatggtcgc tccaaagaaa gcggtctgtt tttgccaatt
    12721 ttttgcagac gtggtgacta atacttcccg ttcctcgttc ggcattttga caatgcacga
    12781 aagccaagaa gccccaacat cagaaagggt aatgcgtaaa aacgcatttt caagggtgaa
    12841 taatttcatc ggttgacctt aattacctag cacggcatag ccgtactagg ttaagcataa
    12901 ttcagccctg ctagggctga ggttatttat tttagagtag cggagctact tccttatgct
    12961 taacccggta cgctttagcg tgccgggcat tctcgcaccc catcggaggc agtacaaacg
    13021 tggaaggttt ctttaatgcc ggtttgcttt tcgtaattgt tagcaacggc ttggcggaga
    13081 tcttccactt tgtcatttgg cactaggcac acgacacaac cgccaaagcc gccgccagtc
    13141 attctggctc cgccgttttt accgatagct tgttgggcga tttcggctaa gcaatccact
    13201 tcagggcagg tgatttcaaa atcatcacgc attgagtcgt gagattgagc catcaactcc
    13261 ccgagtttga ccatatcatt cgcttttaag gcctctactg cttccagaac tcgttgattt
    13321 tcgctgatga tatgttttgc tcgtttatac gccagctcat tctcttcact aagttctgag
    13381 gctcgttcaa taaattgttc cgctgtgaca tcacgcaatt ttgctttgcc gaagaagtgg
    13441 gcggcaaatt cgcactgttc acggcgactg ttgtattcgc cggtaaccaa gtcgtgtttt
    13501 acgttggagt taataatcgc aatcgaatag ccttgtggca caggggttgg ggtgatttct
    13561 aaactacggc agtcgatcat cactaaatga tcttgttgcc cgagagcgga ggtgagctga
    13621 tccatattgc cgcagttgca gccgacaaat ttattctcag cctcttgccc gattaatgcg
    13681 atttgcggta aagaaagcgg taaatcgccg agtaattgag cggttttacc aatcgacact
    13741 tccaatgcgg cggaagaact taaacctgat gacatcggca catcgctggt aatggctaaa
    13801 tctgctcctt gtttgaattc ggggtgtttg gcttgaataa atttcaccac gccacgcaca
    13861 taattcgccc atttttgctc gcttggctca atcgcctggc ttaaatcaaa ttcatcttgt
    13921 tggttgagat caatggcgaa cacccgccat ttgttgtcac tacgtttggc aaagctaacc
    13981 gctgtgccgt aattgatggc acaaggcatt acaaacccat cgttgtaatc agtatgttcg
    14041 ccgataatat tcactctgcc cggggcaaat accgtgcgtt ctgctttata accaaaatgt
    14101 tgttcaaatt gttgcaaagc gatttcttgt ggtttcattt caattcctta tttatcttta
    14161 tagtgtttgg tatcacttac tgcatttaaa cgttcggcag cttgttccgg ggttaaatca
    14221 cgttggcttt ctgccatcat ttcataaccg accataaatt tacgcactgt tgccgaacgc
    14281 aagagcggcg gatagaagtg agcgtgtaat tgccagtgag cattttcctt gccgttaaac
    14341 ggagcgaagt gaaagcccat tgaataagga aagctgatgt taaacagatt gtcgtaacgg
    14401 gtggtgagct ttttcaatgc aagggctaaa tccgcttttt ccgcttcgtt taaatcggta
    14461 atggatttga actgcttggc tttcggcaac agcaaggttt caaacggcca agccgcccag
    14521 taaggcacaa ccgcaatcca atcttcggtt tctgccacaa ttcgctcttg tttgtctaat
    14581 tcacgttgtg cgtagtcaag caacagtggc gagccatatt gagcaaaata tttcgcttgg
    14641 cattcgtctt caatcgcaat ttcattaggt agaaaattac ttgcccaaat ttgcccgtgt
    14701 gggtgagggt tagaacaccc catcattgag cctttgttct caaaaatttg cacccactga
    14761 taatgctctt tcagctcatt cgcttgctct tgccaaactg ttaccacatc agtaatttcc
    14821 tcgatggaaa gttgcggtaa ggttttacta tgatcaggcg aaaaacagat cacacggctt
    14881 tcgccttgtg tatgagaaat ctgaaacagc ggatcatcat tcggtattgg tgccggtgtg
    14941 tctggtagca gggcagagaa gtcgttttta aacacaaacg gcttggtgta attcgggttt
    15001 tgttcgccgg taatccgctt attgccgggg cagaggtaac aacttgggtc gtagctcggt
    15061 ttttcatctt gcacgatttc ttcttgttgc ccttgccacg ggcgttttgc ccgatgcgga
    15121 gagactaaaa tccattgatt ttttaatgga ttaaaacgac gatgtgggtg atcgttgagg
    15181 acaaattcgc tcatataaaa ctcctcgaaa ttagttatgt aaagagtata gcgaaagtca
    15241 gacaaaatga ctgtgacata gctcacaaaa taatgatgtc aagcggtcaa atttcagaaa
    15301 aattttgcaa gttttcctcc attttgcgat ttaaggtagc ttacgtggaa ttgaatgtgg
    15361 cttttggtag aatagatgaa tatgcaagat attaagacaa aaatagatgg aaagactgaa
    15421 taaatttgat gcttggttaa tgaatcataa acctaatgct aggttaagcg gagcgagtcg
    15481 tttgttgaca gagttttggt tctttgggtt aaaagaagct agagcctgtt tatttgcggg
    15541 attatttttt attgcgatgt tttcggtacc aaaaacggga ttatggggct tacctcgtta
    15601 tgatattttg ctgatttttg ccatagtggt gcaaattgca atggtgaaac tggggctgga
    15661 aacgtgggac gagctaaaag caataagcct atttcatttg gttggttttg tgttagaagt
    15721 ctttaaaaca tcgagtaata ttcaatcttg ggcatatccg gattttgcct atactaaatt
    15781 gttcaatgtg ccattattta ctggttttat gtatgcagca gttggttctt acattatcca
    15841 agcgtggcgg ttgtttgatt tgaaaattaa aagccacctg ccctattggt tagccacttt
    15901 aacggcactg atgatttacc tgaatttctt tacgcatcat tacattgggg attaccgttg
    15961 gtatattgcc gcttttgcat tagggctgta tgcacgtact tttgtatttt tcacccctta
    16021 tgacattaca cgaaaaatgc cactgctgct ttctttcttc ctgataggtt ttttcatttg
    16081 gttggcggaa aatatcggta cgtttgccgg aatttggcgc tacccgaatc agtttggggc
    16141 ttggtctatg gtgcatatga gcaagtggag tgcttgggcg ttattggtga tgatgacttt
    16201 taccatcatt gtgcatttaa agcatatcaa gcaaacagtc agagtctcga gcgattaaca
    16261 agctgtgggt tttggcgaaa attttactca tcagttattt tcagtggaat taggggcaaa
    16321 taataatttg cccctatatc aaattatgga ttttcccctt ccacatcaat aatcatcact
    16381 tccgactgtg agcctaaccg catcggcacg ccccagaatc cgtagccgga ggtgacaaaa
    16441 taatgcccga agccgatttt ttcatagccg taatgtaatc gatagatcag tttggtaata
    16501 atacttgcag ggaacacttg ccctttgtga gcgtgtcctg aaacttgaat atcaatcggc
    16561 aatttagcat gttgctcaat ttcagtcggg cggtggtcaa gcaaaattac cggtagttta
    16621 gtgttcacgt tttgtaaaag ctgttcggca gaaggtcgat ttttgactaa atcatcatta
    16681 cgcccaataa gggtaaattt tccgttaatt tcggccgttt gatcccataa aacagtaata
    16741 ccggcgtcgg taatttcttt tgcaatcgtt tcttgagccc caaaaaagtc gtgattgcca
    16801 agggtagcat acacgccaag aggagctttt aatttggcta aatgaggctg cattttatcg
    16861 gcaacataaa cttcggtatt gtcgtccata atatcgcccg gcaataaaat cagatcgact
    16921 ttttgctggt tgaaaatctc tgccagttgg tcaagttgct tggttccgaa cagttttcct
    16981 aaatgcagat cgcttgccat accaatgcga agcggtttct ctaatggttt atccaatttc
    17041 accgaataat gtactactgt tggggtataa gcgttgtaat agccaagccc aagtaagcca
    17101 aagaatgcaa atgggtaggc gattttcagc cagcgattga cggtagtatt gccgttgaat
    17161 attttgtaaa tacaagcggt gaaaaaactg ataaaaaatg caaaaagtaa caataccaat
    17221 atgaatgcca ttattctaaa tagcgcaaaa gtacgagtaa gatgcaaaat cactaatccg
    17281 tttgcgacta agaaagtgag aataccaact gttttacggt ttttacttga taaattaaat
    17341 aaccagctga cagtctttgc aaagttgaat aaaaagagtt gtaacaccgc aatcacaagg
    17401 gcggtggtaa tgtagtaacg atattccata tttttccttc aataaattgg ctaaacccag
    17461 ccgatttgtc ttaataaaaa taagccgatg ctggcactaa acattgagcc gagagtcgta
    17521 atgccgatca gatttgcggc tgcctcgccg tctccgccat agttgcgtgt cattgcgtag
    17581 gtggctgaag caacgggagc agaagcagcc acaaagacaa tgcctagttc catcggcgga
    17641 agttgaaaca caaatttccc gagtagtagc aagaaaattg gagcaaaaat cagccgaatc
    17701 gaggcagaaa acagcacaat tttattgatg gtgctttcca ctccttgatt aaattgtttc
    17761 aactgtttga aattaatgct tgctccggtg cagataagtg ctaatggtag tgtcaggctc
    17821 gccattaatt taccagcaga ctcaagcggg gttggaattt ggtggcttaa ttcaaaatag
    17881 ttaaaagtta agcctgcaat gacggctaga atcagcggat ttctcaatat cgacaatatt
    17941 aatctgccaa aattcacttt tttctcgctt aacgatgaag tgagggtaat cactgcaagc
    18001 acattaaagg taatcaccaa gcacgaaata taaactgagg cggcagcgag agctttatcg
    18061 ccataagcat tgagaattaa ggcaatgcct aaaatcgccg cattggtacg gaaagtgcct
    18121 tgagtgaaaa tacaacgata acggcggttt tcaatatgtc gagccgccca ccattccgcc
    18181 cataaataga tcaaaatcga accgccgact ccggtcgaga tcaggttgat ttggctggag
    18241 aaatctaacg ggctttttag catattcaag aaaatcatcg gtggcagggt aaaattaaat
    18301 accacctttg atgccatatt gcaaaaggta tcgtcaataa attttcgtct gcgtggaaaa
    18361 ataccgaaca gcattaacaa aatggttggt aaggtaacgc caatgctaaa ttggatagag
    18421 tcgaaaagca taatgtttgc cttaaatgat ggcacgagtg tcttttgctt gtaccgtaga
    18481 ttatcaataa agtaccagcg tggacgctgg tactatcatc aatggaaatg aaattacaat
    18541 cctgccttta agcttgcttc gacaaattta tccaaatcac cgtccagcac ttgttgggtg
    18601 gtgcgatgtt ccacaccggt acggtggtct ttaatccgtg aatcgtctag cacataagag
    18661 cggatctggc tgccccagcc gatgtcggat ttgttgtctt ccatcgcctg tttttccgca
    18721 tttttcttgc tcatttccag ctcatatagc ttcgctttaa gctgtttcat cgcctgatct
    18781 ttattttgat gttgtgaacg accgttctgg cactgcacca caatgccgct cggtatatgg
    18841 gtaattcgca ccgccgattc ggttttattg acgtgctgac cacccgcccc tgaggcacga
    18901 tacacatcaa tccgcaaatc cgcagggttg atttcaatat caatatcgtc atcgacttcc
    18961 ggataaacga aagccgccga gaacgaggta tgacgaccgt tattggcatc aaacgggctt
    19021 ttacgcacca agcggtgaat acccgtttcg gttctgaacc agccgtaagc atagtcgccg
    19081 gaaattttca cggtggcgga tttaatccct gccacatcac cgtctgaggc ttccattagt
    19141 tcggctttaa accctttgct ctctgcccaa cgcaaataca tacgcagtaa catttctgtc
    19201 cagtcctgag cttccgttcc acccgaaccg gcttgcaaat ccaaatagca atcggcactg
    19261 tcgtgtgggc cgctgaacat ccgcttaaat tctaaatcgg caagtttttt ctctaattcg
    19321 tctgcttcca cttgggcttc attgaaggta tcctgatctt ctgcttccac cgccagctca
    19381 atcaaccctt caacatcttc aatcccttgc tctaaggctt taatcgtatt gacgatctgc
    19441 tccaacattg cccgctcttt accaagcgct tgtgcttttt ccggcttgtt ccatacatcg
    19501 ggttgttcca gctcggcatt gacctcttct aagcgttcga ctttatgctc aaagtcaaag
    19561 ataccccctg atcaccgcgg tgcgctcgct taaatcagtt agttggtttt taattgggtt
    19621 taattcaaac attgtcgttc ctgtttttgc ttattttaaa aagatgaatt atagctgaag
    19681 ttaagcaagc ggtcgaattt tgcaagaaat ggagcaatga tcgtttctag taatgagatt
    19741 tggttcataa aagttgcaac tgtttctgct atttggcttt gatagctaaa aatctttaaa
    19801 aaaacaagcg gtcgttttac cccatttttt gcaaaacgac cgtagcttct tgctataatc
    19861 gctgaaaaaa tgctgcaagg agattttatg gcaaagcgcc caagtgatat tgatgcaacc
    19921 ctattgcaac tggaaatcct acgccgtatc cccaaattac ccgctaaaat tgatgctaaa
    19981 agtttgcacc aacagctatt agatgccggc tttgaacggg atattcgcac tgttcagcgt
    20041 tcgctcaaaa tgttatgcga gcattttgat attgaatgcg atgagcggag caaacccttt
    20101 ggttatagct ggaaaatccg ctcagagggg ctggcattgc cgattctcaa cgaacaacaa
    20161 tcattactgc taaaacttgc cgagcaacag ctgaaatatc tgttacccgc aaatttaatg
    20221 gcatcaatga aacccttttt tgagcaggca gacagaatgg tttccggggc gaaagacaag
    20281 cccgaatacc aatggctaaa taaagtttgc tccacgccaa ccagcctacc gctgatccct
    20341 gcaaaaatta aagaagagat ttttaattcc gtaagccaag ccttatttca aaataagttg
    20401 ttaaagatcg aatatcagaa ccagcacggc aaaaaacacc aagcgacaat tatgccgttg
    20461 gcgatttcac aacaaggtgc gagcatttat ttggtctgcc gttacgaagg gtttgacgac
    20521 aaccgcctgt tggctcttca ccgcattcgt aaagcggaga tttctacttt tagttttgaa
    20581 cgcccgaaag attttaattt gcaagcctac caagatgccg gacacctcgg ttttggcaat
    20641 ggcgaaaaag ctagccttac cttttcgatt agcagagacg ccggtttcca tttaaccgaa
    20701 acaccgcttg ccaaagatca aaaaattctc gaggagagtg aaactcacta ccgtattcaa
    20761 gccatagtcg ctgataatga tatgctaacc tggtagctac gcaaatttgg cgaagatatt
    20821 tgggatatcg agaaagaagc gctaaaataa gctaaacaag cggtcggttt tgtgggaatt
    20881 tttgctaaat agtatcgacc gctcctccct aaacagacct ttatcataaa tacaactctt
    20941 tcaatcagat attcttactg tctattgatg aacgattcga atttttctag tggttgaaat
    21001 ttaaactaat tttcttgctt tttggcattt ttcagacttt taattctctc cattagcctg
    21061 tttttttacg ctctttttca taaacaggaa taaccaatgc cttttcaact tactttctgc
    21121 caacaagccg gcaatcagca ccagaaaaat caagatgcac tgtttaacgg caaagcggtg
    21181 taccaatggc aacttaaaaa tgccgagagt tatctgctgg ataacgacaa agtaattttt
    21241 ggggttgcgg acggcgtttc cagccaccct cgaaatcatc ttgcctcaca ttatttaatg
    21301 gcgttactca gccaatgcca atcccttgat agccaatggt tgcgacaggc tcacggcgat
    21361 ttttgcgaaa aattagcgaa agattatttt ggtgcttctt gcacttttgt tgcttgtgaa
    21421 ttacaccata acggcagagg gcgtatggtt aatgtgggcg acagtcgagc ctataaaatt
    21481 acggcaaacg gggagtggca acaactgagt tttgatcaca ccatactggc tgaaatgaaa
    21541 cagaaaggct tggttaagga agggagcaac tatgcctcaa tgtataacgg cttaaccgat
    21601 tgtattgttg ccgattttga cgccgatgat ttccgcattc atatagccga atttcaactg
    21661 gaaaaaggcg agagcatttt gctctgttct gacggtttgc acgaacaact cgccccagaa
    21721 gctattcagg cgatttagga cggatacgaa agcccgtctc atcgtctgca aatttgcaga
    21781 aaaatggtaa aaatgcaccg cttgtatgac gatttttctg cggtgatttg tgaaattgtg
    21841 taattaaaac gacattattt gtcgcattgg tgcttaaaat ccgcataaaa cagaggagaa
    21901 aaaaatgaaa aacgatttcc attatgccgc tgaattaatc cgcaatgcag acggcatttt
    21961 aattaccgca ggggctggaa tgtcggtgga cagtggcttg cccgatttcc gtagcgtggg
    22021 agggttatgg aattcctacc caccgctcaa aaaatttaat ttgcaattta tgcagattgc
    22081 cacaccgctt gcctatcagg aacgccctga
//
LOCUS       DANLZD010000026        21214 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.026, whole genome shotgun sequence.
ACCESSION   DANLZD010000026 DANLZD010000000
VERSION     DANLZD010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21214)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21214)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21214
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.026"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..167)
                     /locus_tag="PXE26_000744"
     CDS             complement(<1..167)
                     /locus_tag="PXE26_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5593350.1"
                     /translation="MKAQQLKNAILQLAIQGKLVPQDPNDEPASELLCKIQAEKDRLI
                     AEGKIKKNKKTA"
     gene            complement(373..2034)
                     /locus_tag="PXE26_000745"
     CDS             complement(373..2034)
                     /locus_tag="PXE26_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDL5593351.1"
                     /translation="MLTWEHIEKMIAHQQFIREKAEIEYKEAKNSVPKDLWHTYSAFA
                     NSNGGFILLGIKENEQGHFPELLISGVNDPDKVIDELFSQSRSEKVSKSLLKDNDVKI
                     FQVENKSVIAIYVKAADILDRPIHLNGDYRLSYVRLNSGDHKLTSSELRSFISSYSQK
                     DADGRIVPYASIDDISLSTLDKYRNLLKAHNSTSKLLTLSDEKLLQEIGAYKKDLAQN
                     SEGITNAGLLMFGKHYAITSIFPHFFFEYYEEAGDVKRYTLRITDFDLEEGNLFEFYL
                     KIVPLIQELGKDKHFKLDNLTRTEENEITDGLREALINAITHADYFNNVRHLKVIKTK
                     DNKLIFENAGVMLVDIPTAIAGQRSECRNSIIHNLFHRLGLCERQGQGVRDIYSYWQS
                     RNFNSPLLESEIDYTKLTLTFQSGMIADFEEKFTACFGENFSELQPIQKDCLLFIAFN
                     QGKAMFAELAQKLPQYPRRNITLALARLKEKGLLTSSGSPRKQLYTLVNLEWIITEKS
                     QDDYFNPPFDQLDKASESKGAPPKKSKVKQVKQLPQNKANKLPPK"
     gene            complement(2047..3516)
                     /locus_tag="PXE26_000746"
     CDS             complement(2047..3516)
                     /locus_tag="PXE26_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HDL5593352.1"
                     /translation="MSLNNIVKRLQDVMRNDAGINGDAQRIEQIVWILFLKIYDAKEQ
                     EWELENDEYHSILPNFLRWQNWAEDKKDGKAMTGDELLSFVNNELFPTLKNLPISADT
                     PMNQRIIRAAFEDNNNYMKNGVLLRQVINIIDEIDFAHYQERHAFGDIYENILKSLQS
                     AGNAGEFYTPRAVTDFMVQAIKPKLGERIADFACGTGGFLTSALKVLESQIQTLSDRT
                     LFNNSVYGIEKKALPHLLCITNLLLHDIDNPNVHHDNALEKSVKDYTENDKFDVILMN
                     PPYGGSEIEQIKKNFPTALQSSETADLFMSVIMYRLKQNGRAAVVLPDGFLFGTDNAK
                     VAIKKKLLEEFNLHTIIRLPHSVFAPYTSITTNILFFDKTEPTRETWVYRLDMPQGYK
                     NFSKTKPMKLEHFNEVVEWWGNRQVIEVEGFDKAKSFTLKEMSDRQYNLDLCGFPHEE
                     EEILPPDELIADYQRKRTAYNADIDKILAEITDILGIKL"
     gene            complement(3564..5915)
                     /locus_tag="PXE26_000747"
     CDS             complement(3564..5915)
                     /locus_tag="PXE26_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL5593353.1"
                     /translation="MYTLQELKQMNEQEIRSRLISPAIRNAGWSDRQIGEEYTFKTNK
                     RFTDGQVVVDPKTTQTKRIEAKRVDYLLYTSANQKIAVVEAKDNHHSSRHGLQQAMTY
                     ARLLDVPFAYSSNGDEFVEHDFITGVQRTLPMSAFPTPDELHQRWAKQYTTEELKIIQ
                     QPYYTSSTDTFKEPRYYQEIAINRTVEAVAKGQQRILLVMATGTGKTYTAFQIIHRLK
                     TSGAKKKILFLADRNVLVDQPMMQDFKPFKDKMVKVSNKKLDSAYEVYLALYQQLDGE
                     TDNELFKQFQPSFFDLIVIDECHRGSAKEDSDWRAILKYFKDATHIGMTATPKETDDA
                     SNITYFGEPIYTYSLKQGIEDGFLAPYRVIRVDLDCDLKGWRPTKGLKDHQGNEIEDR
                     LYTVKDFDYNIVLNDRTRLVAERICEFLRKTDRLQKTIVFCANINHAERMVAELSRLN
                     ADMLKHNSKYVCQITGDQSGKGVDLEEFCDVANEGKDYPVIAVTSKLMTTGVDSKTCK
                     LVVLDANIQSMTEFKQIIGRGTRLRPDFGKEFFTILDFRGVTRLFADPAFDGEPVVIL
                     DVPENKPLVEQPLPKPSDKDIIKDPELKPYKIPVVVDFGTLKLRILDEKVQYLNEQGE
                     LVSEDIDLFSKREMQKEFGSYEQFQQQWTTSGEIFSKFYTDPKWLAALRQTRQFSHDV
                     EDFDVLSHISFGKKPLTKTERAEKVKQSGYVEQYSPENQQVLGLLLNEYVKSGNQDLT
                     KTEILKTPQFSRFGGLVSIIKNFGGKELYQKAVKGLEKMIYSE"
     gene            complement(5987..6880)
                     /gene="psd"
                     /locus_tag="PXE26_000748"
     CDS             complement(5987..6880)
                     /gene="psd"
                     /locus_tag="PXE26_000748"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251643.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDL5593354.1"
                     /translation="MQLKKYPVPTYFQRVKIALHYLLPQLAITRAAGWLAEQKWGVVT
                     HLIIKLFAKQYKVNLSEAKKTEPSDYATFNEFFIRELKENARPINQDPNTLCLPAEGK
                     VSESGEISDNRLLQAKGHHFTLETLLANDEEMAAKFKDGTFITTYLSPTDYHRVHMPC
                     DGTLRKMIYVPGELFSVNPFLAEHVPNLFARNERVICEFDTAFGPMLQILVGATVTAS
                     MSTVWAGVINPPRADEVVVWNYETEGEKAIKLQKGEEMGAFRLGSTVINLFPKGKVHL
                     NPALIAGMQTRMGEELGRIIN"
     gene            complement(7045..7383)
                     /locus_tag="PXE26_000749"
     CDS             complement(7045..7383)
                     /locus_tag="PXE26_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HDL5593355.1"
                     /translation="MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQI
                     TNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRTKNGNFKNIEQLAEVSGIGQATV
                     EKNRANIILE"
     gene            7676..8995
                     /locus_tag="PXE26_000750"
     CDS             7676..8995
                     /locus_tag="PXE26_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="opacity-associated protein A"
                     /protein_id="HDL5593356.1"
                     /translation="MTQNNFRKEPVFGESSVTSQDAEATKTDTAQAPYVSLRSTKAPG
                     HTFTPIMKRPDAKVEDHTADVFSAKQAKEFQFTPSSEATEAVEPDNTIHSVEESVSTA
                     SFNAVEAQENVEKEVVKPAPESFTTERIIPNAATAAAAATAAAAATKTKEIKAKMPPK
                     TRRLLLVALLALALLVLFFLLKPSTPETVEELQSQQGGSLPIEFRPVDEAEAKRAEEQ
                     ARAEQEAAEAAKAQEQAQAAQQESVTVAPAQTEQTMAKPSQDSQSQTQSQAVVEQPVA
                     VKPVENKPVVAQPAIKPKTENSVVFQPETTVKQQPKAPAKTEVKTERATLAAKETAKT
                     AAKPVEKAPTKTEAVKAAPAAESANAVATKTMTVPKGVSLMQVFRDNNLNISDVNAMS
                     KVNNVVSNLKVGERVTVRLDKNNRVVEMSIGSGGKFTRQANGSYTFK"
     gene            9113..9475
                     /locus_tag="PXE26_000751"
     CDS             9113..9475
                     /locus_tag="PXE26_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="HDL5593357.1"
                     /translation="MLVACSTVVTPVEQIHQVQKEKESVKKVTKLIAQAPKVSLYRCE
                     NDKKVEVERQGRTKKALKKEIVTVSYQGTTHQLSPSVTRDGKKYTNIRWTWHETRSGK
                     AFLYNNTKKTLAANCIKQ"
     gene            9586..10623
                     /gene="waaF"
                     /locus_tag="PXE26_000752"
     CDS             9586..10623
                     /gene="waaF"
                     /locus_tag="PXE26_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HDL5593358.1"
                     /translation="MNILVIGPSWVGDMMMSHALYQQLKIQYPNCQIDVMAPDWCCPL
                     LARMPEVRNAISMPIGHGSFRLCERYRLGKSLRNQYDMAIVLPNSLKSAFIPLFAKIA
                     RRRGWKGESRYFFLNDLRSNKNDYPMMVQRYVALAFEKATVPTAQQLPIAYPYLTTDS
                     EQIEQTKAKFEKQLAYAENRPAIGFCPGAEFGPAKRWPHYHYAILAKMLIEQGYSVRL
                     FGSKKDEAAGEQIRLALPENLQRYCLNLAGQTDLNQAVDLIADCNAVVSNDSGLMHIA
                     AALNKPLVALYGPTSPQYTPPLSQNAEIMRLIEGGLIKIRKGEGAEGYHQSLIDIQPE
                     MVMDKLAELLV"
     gene            10690..11649
                     /gene="rfaC"
                     /locus_tag="PXE26_000753"
     CDS             10690..11649
                     /gene="rfaC"
                     /locus_tag="PXE26_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase RfaC"
                     /protein_id="HDL5593359.1"
                     /translation="MKILIVKTSSMGDVLHTLPAITDMQNAIPDLKVDWVVEENFTEI
                     PAWHSAVNKVIPVAIRRWRKNLCQRQTWVEWQQFLKQLKSEQYDAVIDAQGLIKSAVL
                     VTRQAKGKKFGYDKNSAREGLSSLFYDETFNIPYQQHAVERIRKLCAKSLGYALPTER
                     GDYCIAQHFAKNPQKTTAYIMLIHATTRADKHWQEAYWAELIQALDKHNLAVRLPWGN
                     QAEKERAERLASVANNAKVLPKMSLTDIATQLAGAAAVVSVDTGLSHLAAALDKPNVI
                     LYGATDPKLIGAYGQNQFYLKADKMENITSSQVLEKLLPLINK"
     gene            11770..12144
                     /gene="rpsL"
                     /locus_tag="PXE26_000754"
     CDS             11770..12144
                     /gene="rpsL"
                     /locus_tag="PXE26_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005306278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HDL5593360.1"
                     /translation="MATINQLVRKPRVKKVVKSNVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCRIRLTNGFEVTSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGAL
                     DCAGVKDRKQGRSKYGVKRPKA"
     gene            12275..12745
                     /gene="rpsG"
                     /locus_tag="PXE26_000755"
     CDS             12275..12745
                     /gene="rpsG"
                     /locus_tag="PXE26_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HDL5593361.1"
                     /translation="MPRRRSIEPRKILPDPKFGSELLAKFINVLMVDGKKSTAEKIVY
                     GALETLTQRSGKEALEAFEIALENVRPTVEVKSRRVGGSTYQVPVEVRPTRRNALAMR
                     WIVEAARKRGDKSMALRLANELSDAADNKGSAVKKREDVHRMAEANKAFAHFRW"
     gene            12847..14949
                     /gene="fusA"
                     /locus_tag="PXE26_000756"
     CDS             12847..14949
                     /gene="fusA"
                     /locus_tag="PXE26_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020455498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HDL5593362.1"
                     /translation="MARTTPISLYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVH
                     DGAATMDWMEQEQERGITITSAATTAFWSGMSQQYPQHRINVIDTPGHVDFTIEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRTGANFLRVVEQIKT
                     RLGGNSVALQLPIGAEDSFKGVVDLIKMKAINWNEADQGMTFTYEDIPADMLEACEEH
                     RAMLVEAAAEASEELMEKFFSGEELTEDEIKAALRQRVLAGEVIPVCCGSAFKNKGVQ
                     AMLDAVIDYLPAPTDIPAIKGINEDETEGERHASDDEPFASLAFKIATDPFVGNLTFF
                     RVYSGVINSGDTVYNSVKQKRERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVGTG
                     DTLCAIDAPIILERMEFPEPVISVAVEPKTKADQEKMGLALGRLAQEDPSFRVHTDEE
                     SGETIISGMGELHLDIIVDRMKREFKVEANIGKPQVSYRETIRTRVNDVEGKHAKQSG
                     GRGQYGHVVIDLYPLDAEGPGYEFVNEIKGGVIPGEYIPAVDKGIQEQLKSGPLAGYP
                     VVDLGVRLHFGSYHDVDSSELAFKLAASLAFKAAFAKASPVLLEPIMKVEVETPPDYV
                     GDVIGDLSRRRAMVNGQEANEFVVKINAEVPLSEMFGYATDLRSQTQGRASYSMEPLK
                     YAEAPKNVADAIIEARRK"
     gene            15009..16193
                     /gene="tuf"
                     /locus_tag="PXE26_000757"
     CDS             15009..16193
                     /gene="tuf"
                     /locus_tag="PXE26_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HDL5593363.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKHFGGAA
                     RAFDQIDNAPEEKARGITINTSHVEYDTATRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ
                     YDFPGDDTPIVRGSALQALNGVAEWEEKILELANHLDTYIPEPERAIDKPFLLPIEDV
                     FSISGRGTVVTGRVERGIIRTGDEVEIVGIKDTAKTTVTGVEMFRKLLDEGRAGENVG
                     ALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFR
                     TTDVTGTIELPEGVEMVMPGDNIKMTVSLIHPIAMDEGLRFAIREGGRTVGAGVVAKI
                     IK"
     gene            16490..17788
                     /gene="tig"
                     /locus_tag="PXE26_000758"
     CDS             16490..17788
                     /gene="tig"
                     /locus_tag="PXE26_000758"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HDL5593364.1"
                     /translation="MSFSIETLEGLKRRVTINVPADKIEAAYKEQLKGYAKNARVDGF
                     RKGKVPHSIIEQRFGIAARQDVLSDEMQRAFFEAVIAEKINLAGRPTFTPNNYQPGQD
                     FSFTAEFEVFPEVELKGLENIEVEKPVVEIADADLDKMVDVLRKQQATWSESQEAAKA
                     ESRVTIDFVGSVDGEEFEGGKASDFVLFMGQGRMIPGFEDGIVGRKAGEQFDIDVTFP
                     EEYHAENLKGKAAKFAITLKKVEEMVLPELTEEFVKKFGNAKSVEELRAEIKKNMQRE
                     LKNAVTSRVKTQVINGLIAQNDVEVPAAAVEEEINVLRQQAVQRFGGKPEMAAQLPAE
                     LFEAEAKRRVQVGLLLSSIIGSNELKVDEKRVEEMIADIASAYEQPAEVVAHYAKNRQ
                     LTENIRNVVLEEQAVDAVLAKAKVTEKTMSFDEVMSQQAQ"
     gene            17904..18356
                     /locus_tag="PXE26_000759"
     CDS             17904..18356
                     /locus_tag="PXE26_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDL5593365.1"
                     /translation="MEQLTFAQQLEQFFANHTLMVFAWVALLIAVIFSFYKSATQKYK
                     IVDNAQATQLINKEEAVVVDLRSDEEFRAGHIIDSIHVLPSDIKAAKINQIDKYKARP
                     VIVVDTNDFTSGGVAADLAKQGFSRVYVLKEGIGGWRAASLPTIKKHK"
     gene            18377..18877
                     /gene="secB"
                     /locus_tag="PXE26_000760"
     CDS             18377..18877
                     /gene="secB"
                     /locus_tag="PXE26_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HDL5593366.1"
                     /translation="MSEENQVASTEEATQTPFELQIQRIYVKDVSFEAPNLPTIFQQE
                     WKPQLGFELDTETKEIGEDLYEVTLHITVQTTLEDSNDVAFICEVKQAGVFTIKGLEG
                     IQLAHCLASQCPNVLYPYARELISSLVNRGTFPALNLSPVNFDALFMDYLQRQEESAE
                     EPALAN"
     gene            18984..19994
                     /gene="gpsA"
                     /locus_tag="PXE26_000761"
     CDS             18984..19994
                     /gene="gpsA"
                     /locus_tag="PXE26_000761"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HDL5593367.1"
                     /translation="MSEIYSAPITVLGAGSYGTALAIALSRNGHKTYLWGHNPDKMAV
                     LASERMNQDFLPDIVFPEALEIVADLATAVQKSKDLLIVVPSHVFSEVLAQIKPFLSQ
                     DHRIMWATKGLERDTGRLLQTVAKEILGEIYPLAVLSGPTFAKELAAGLPTAISLAST
                     DPVFADQMQKRSHCSKAFRVYLNNDIIGVQLGGAIKNVIAIGAGISDGMGFGANARTA
                     LITRGLAEISRLGVSLGADPKTFTGMAGLGDLVLTCTDNQSRNRRFGLALGQGKSAEV
                     AIAEIGQVVEGFYNTKEAYLLAQTQGVEMPIVEQIYQMLFCGKQASDVVKTLLGRERK
                     GE"
     gene            20010..20825
                     /gene="cysE"
                     /locus_tag="PXE26_000762"
     CDS             20010..20825
                     /gene="cysE"
                     /locus_tag="PXE26_000762"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HDL5593368.1"
                     /translation="MQQSEINQIWQAIRDEAKELANCEPMLASFFHATILKHHNLGDA
                     LSYILANKLENPIMPAIALKEIIEEAYRAEPQIIASAACDINAVRTRDPAVDKWSTPL
                     LYLKGFHALQSYRVTHYLWNQGRKALAVYLQNEISVAFDVDIHPAAKVGCGIMFDHAT
                     GIVVGETSVIENDVSILQGVTLGGTGKENGDRHPKIREGVMIGAGAKILGNIEIGRYS
                     KIGANSVVLQPVPDHATAAGVPARIIGKSSEQKPAFDMNQYFEDEQGLFGDGI"
     gene            20874..>21214
                     /locus_tag="PXE26_000763"
     CDS             20874..>21214
                     /locus_tag="PXE26_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5593369.1"
                     /translation="MQLTFNDFQNYYNGKGDLTMFSFYGKKTWENGIYVGIDGSIGRA
                     NNKLSHQSQTIKLARNVYSLGLTVGKTLEVASFNLQPSFGMRYHHLTSANAQLENTKF
                     ETDRVDLLAIQA"
BASE COUNT         6400 a         4075 c         4567 g         6172 t
ORIGIN      
        1 gcagtttttt tgtttttttt gatctttcct tctgcaatca agcggtcttt ttctgcttgg
       61 attttgcaaa ggagttcgct tgccggttca tcatttggat cttgtggaac gagcttgcct
      121 tggattgcta gttgtaggat tgcgtttttt agctgttggg ctttcatttt ttattctcaa
      181 taatcggttg ttatttctta aagtatcttt gattacggtg ttttgggttt tctgggaatt
      241 gcatttcgat cacaccaagc gttagtgcag gttttaaata ctgcatacgg aaatgcttat
      301 catcttttaa cctgagtttt ttcataattt ctttgctctt catcggctca agcaacactg
      361 aaagtaagcg atttacttcg ggggtaattt gtttgctttg ttctggggta attgtttgac
      421 ttgcttcact ttgcttttct tcgggggggc gcccttactc tcactagctt tatcaagttg
      481 gtcgaaaggt ggattaaaat aatcatcttg tgatttctct gtgattatcc attctaaatt
      541 cactagggta tagagttgtt ttctcggact ccccgaactg gttagtaagc ctttttcttt
      601 cagtcgtgct agtgccaaag taatatttct gcgtggatat tggggcagtt tttgtgctaa
      661 ttctgcaaac attgctttac cttgattgaa ggcgataaag agtaagcaat ctttttgaat
      721 aggctgtaac tcagagaaat tttcgccaaa gcaagcggta aatttttcct caaaatctgc
      781 aatcatacct gattgaaaag ttaaggtgag tttagtgtaa tcaatttcac tttctaaaag
      841 cggtgaattg aaatttcggc tttgccaata tgaataaata tcccgaacgc cttgtccttg
      901 tcgctcacat agccctaaac ggtggaataa gttatgaata atagaattac ggcattccga
      961 tctttgccct gcaatagccg tgggaatatc aaccaacatt actcctgcat tttcaaaaat
     1021 cagtttgtta tctttggttt taatgacttt tagatggcga acattgttaa agtaatctgc
     1081 gtgagtaatt gcattgatta gagcttcccg tagcccgtca gtaatttcat tttcctcagt
     1141 acgggttaaa ttatctaatt tgaaatgttt atctttacca agctcttgaa taagtggcac
     1201 aattttcaag taaaattcaa agagattgcc ttcttcaaga tcaaaatcgg taatccgtaa
     1261 tgtatagcgt tttacatcac cagcttcttc gtaatattca aaaaagaagt ggggaaatat
     1321 gcttgtaatg gcatagtgct taccaaacat caataagcct gcattggtaa tgccctcgct
     1381 attctgtgct aaatcttttt tataagcccc aatttcttgc agcaatttct catcggataa
     1441 cgtaagtaat tttgatgtgc tgttatgggc tttcagcaga tttctgtatt tatccaatgt
     1501 gcttaaactg atatcatcaa tagaagcata aggcacaatt ctcccatcag catctttttg
     1561 gctatagctt gaaatgaaag aacgcagttc agaggaggtg agtttatgat cgcctgaatt
     1621 taaacgaaca taagaaagtc gataatcacc atttaaatgg ataggacggt ctaaaatatc
     1681 agctgctttc acataaattg caatcacgct tttattttca acttgaaaga ttttcacatc
     1741 attatccttt aataaggatt tactgacttt ttcactacga gattgggaaa ataattcatc
     1801 aatgacttta tcaggatcat taacaccaga aattagcagt tcaggaaaat gtccttgttc
     1861 attttccttt attcctaata aaataaagcc accattgctg tttgcaaaag ccgaataagt
     1921 atgccaaaga tcttttggca cactattttt tgcctcttta tattcaattt ctgccttttc
     1981 tcggataaat tgctgatgtg caatcatttt ttcgatatgt tcccaagtca gcattttatg
     2041 ctcctattac agtttaatgc ctaaaatatc ggtaatttct gctagaatct tatcaatatc
     2101 agcattgtaa gcggtgcgtt ttcgctgata atctgcaatt agttcatcag gcggaaggat
     2161 ttcctcttct tcgtgaggaa agccacataa atcgaggttg tattgacggt cggacatttc
     2221 ctttaatgta aaacttttcg ctttgtcaaa cccttcgact tcaatcactt ggcgatttcc
     2281 ccaccattca acaacttcgt tgaaatgttc caatttcatc ggtttagttt tggagaaatt
     2341 tttataaccc tgtggcatat caaggcgata aacccaagtt tcacgggttg gctcggtttt
     2401 atcaaaaaac agaatattag tcgtaatcga ggtataaggg gcaaagacac tatgcggtaa
     2461 gcggataatc gtatgcagat taaactcttc taatagcttt ttcttaatcg caactttggc
     2521 attatctgtg ccgaacaaaa atccgtcagg cagcaccacc gcagcccgtc cattctgttt
     2581 taggcggtac ataattaccg acataaacag atcagcggtt tcactgctct gtaaagccgt
     2641 agggaaattc tttttaattt gctcaatttc tgaacctccg taaggtggat tcatcaaaat
     2701 cacatcaaat ttatcatttt cggtgtaatc tttgaccgat ttttctagag cattatcgtg
     2761 atgtacattc ggattatcaa tatcgtgcaa caataaattg gtaatacaaa gcaggtgagg
     2821 aagggctttt ttctcaatgc catacacaga attattgaat aaagtgcggt cagaaagggt
     2881 ttgaatttga ctttccaata cctttaacgc cgaagttaaa aaaccacccg tcccacaggc
     2941 aaaatcggca atgcgttcgc caagtttcgg tttgattgct tgtaccataa aatcggttac
     3001 agcgcgaggg gtataaaatt cccctgcatt acctgcactt tgtaaacttt tgaggatatt
     3061 ttcataaata tcgccaaagg cgtgtcgttc ttggtaatgg gcaaaatcaa tttcatcaat
     3121 gatattgata acctgacgta ataacacccc atttttcata tagttgttat tatcttcaaa
     3181 agcagcacgg ataatccgtt ggttcatcgg cgtatcggct gaaataggca gattttttaa
     3241 agtcgggaaa agttcgttat tgacgaaaga gagtaattca tcaccagtca tcgctttgcc
     3301 gtctttttta tcttccgccc aattttgcca gcgtaaaaaa ttcggcaaaa ttgagtgata
     3361 ttcatcgttt tccagttccc actcttgttc tttagcatcg taaattttca agaataagat
     3421 ccagacgatc tgttcaatgc gttgggcatc accgttaatc cctgcatcgt tacgcattac
     3481 atcttgcagg cgttttacta tgttgttgag gctcattgtg atccttgttt atctgtaaaa
     3541 ttttgttgta aaataaccgc ttgttattcc gaataaatca tcttttctaa gccttttacc
     3601 gctttctggt agagttcttt accgccgaaa tttttaataa tagacactag acctccaaaa
     3661 cggctgaatt gcggtgtctt taaaatttcg gttttagtca gatcttgatt gccggatttg
     3721 acatattcat taagcagcaa ccctaaaact tgctggtttt cgggcgaata ctgctccaca
     3781 tagccacttt gtttcacttt ttctgctcgt tcggttttag tcagtggttt tttgccaaag
     3841 gagatgtggc ttaatacatc aaagtcttca acatcgtggc tgaattggcg tgtttggcga
     3901 agggctgcca gccattttgg atcggtgtaa aatttcgaga aaatttcacc gcttgttgtc
     3961 cattgctgtt ggaactgttc gtaactgccg aactcttttt gcatttcccg ttttgagaac
     4021 agatcaatat cttcagaaac cagctcgccc tgctcattca gatattggac tttctcgtct
     4081 aaaatgcgta atttgagtgt gccgaaatcg acaactaccg ggattttata tggctttagc
     4141 tcggggtctt taatgatgtc cttatcactg ggtttaggaa gcggttgttc gacaagtggc
     4201 ttattttccg gtacatctaa aatcaccacc ggctcaccat caaatgccgg atcagcaaac
     4261 aggcgagtaa cgcctcgaaa atctaaaatg gtgaaaaatt ctttgccgaa atcagggcga
     4321 agacgagtgc ctcgtccgat aatttgttta aattccgtca ttgattgaat gtttgcatca
     4381 agtacaacca gcttacaggt tttgctatct acacctgttg tcatcaattt agaggttacg
     4441 gcaatcacag ggtaatcttt cccttcattt gctacatcac aaaattcttc taaatcaacg
     4501 cctttgcctg attggtcgcc tgtaatttgg cagacatatt tggaattgtg tttcaacata
     4561 tcggcattga ggcgtgaaag ctctgccacc attcgctctg catggttgat gttggcacag
     4621 aagactattg ttttctgcaa gcggtcggtt ttgcgtaaaa attcgcaaat tctctccgca
     4681 accaagcggg tgcgatcatt tagcacaatg ttgtaatcga aatctttgac tgtatagagg
     4741 cgatcttcaa tctcattacc ttgatgatct tttaaacctt tggttggtcg ccagcctttt
     4801 aaatcacagt ccagatcaac acgaatcact cgataagggg caagaaagcc gtcttcaata
     4861 ccttgtttga ggctataggt ataaatcggc tcgccaaaat aggtaatgtt gctggcatca
     4921 tcggtttctt tgggggttgc agtcataccg atatgggtgg cgtccttgaa atacttcaaa
     4981 atagcacgcc agtcagaatc ttcttttgct gaaccacgat gacattcatc gatcacaata
     5041 agatcaaaga aagagggttg gaactgctta aacagttcgt tatcggtttc accgtcaagc
     5101 tgttgataaa gtgcaagata gacttcataa gcactgtcga gctttttatt gctgactttc
     5161 accattttgt ctttaaacgg tttgaagtct tgcatcattg gctgatcgac tagtacattg
     5221 cgatcggcaa gaaataaaat tttctttttc gcaccactgg tttttaaacg atggataatt
     5281 tggaaagccg tataggtttt acccgtgcct gttgccatta ccaataaaat cctctgctga
     5341 ccttttgcta cagcttcaac agtacggtta atcgcaattt cttggtagta acgaggctct
     5401 ttaaaggtgt cagtgctact ggtgtaataa ggctgttgaa taattttcag ctcttcggtg
     5461 gtatattgtt tcgcccaacg ttggtggagt tcgtcgggag taggaaatgc tgacatcgga
     5521 agggttcgtt gtacgccagt gataaaatcg tgttccacaa actcatcacc atttgagcta
     5581 tatgcaaaag ggacatcaag caatcgagcg tatgtcattg cttgctgtaa gccgtgtcgg
     5641 gaagagtgat ggttatcttt ggcctcgacc acggcaattt tttgatttgc ggaagtatag
     5701 agcagataat caacccgttt tgcttcgatg cgtttagttt gcgtcgtttt tggatcaaca
     5761 actacttgcc catctgtaaa tcgtttattg gttttaaatg tgtactcttc gccaatttgt
     5821 ctatccgacc atcctgcatt tctaattgca ggagagatta atcgagagcg aatttcttgc
     5881 tcgttcatct gctttaattc ttgaagtgtg tacatatttt tccttccgat aagagtttct
     5941 tatcggaaga ttatagcaaa cagtttaggt aaaattaact caggatttaa ttgataattc
     6001 tacccaactc ttcccccatt cgggtttgca ttcctgcaat aagtgcaggg ttgagatgta
     6061 ctttaccttt cgggaagagg ttaattacgg ttgagcctaa acggaaagct cccatttctt
     6121 cgcctttttg gagtttgatg gctttttcgc cttcggtttc gtaattccaa actaccactt
     6181 catcagcgcg aggcggatta attacgccag cccaaaccgt actcatactt gcggtaaccg
     6241 ttgcaccgac caaaatctgt agcattggtc cgaatgcggt gtcaaattca caaatcacac
     6301 gctcattgcg agcgaataag tttggaacgt gttcggctaa aaacggattg acggagaaca
     6361 attcgcccgg cacataaatc attttacgca atgttccatc gcacggcata tgtacacgat
     6421 ggtaatcagt tggcgataag taggtggtaa taaatgtgcc gtctttaaat tttgccgcca
     6481 tttcttcatc atttgccaat aaggtttcta gcgtaaaatg atgccctttt gcttgtaata
     6541 aacggttatc cgaaatttcg cctgattcgc tgactttacc ttctgccggt aagcaaagtg
     6601 tatttggatc ttgattaatc gggcgtgcgt tttcttttaa ttcacggata aaaaattcat
     6661 taaaagtagc ataatctgac ggctcggttt ttttagcttc agataaattg actttatact
     6721 gttttgcaaa cagtttgatg ataaggtgag taactacgcc ccatttttgc tctgctaacc
     6781 aacctgccgc acgggtaatt gccagttgtg gcagtaaata gtgcagagcg attttcacac
     6841 gttggaaata ggttggaact ggatattttt ttaattgcat tgcgttttcc ttttatttaa
     6901 aaacgagaat ttgcgtttaa ttgggggcga agtatagcaa atacaatgca aaatagataa
     6961 aaaatcttta aggtgttgaa gtggctacaa agaaaaaaac agataggggc tttgtaggaa
     7021 ttccacttca acaatttggt tgtcttattc taaaataata ttggctcgat ttttttctac
     7081 cgttgcttgc ccaattccgg agacttcagc aagttgctca atgtttttaa aattgccgtt
     7141 tttagtacgg taatcgacaa tcgcttgagc ttttttctgc ccaattccca ctagcttgtc
     7201 ttgcaattca gcagcactag cagtattgat atttaccgca ttagcgttgg tgatttgtgt
     7261 ttgctgtacg ggttgagtga ctgcattttg ttcaacaggc attgtagttg gcggtgtttg
     7321 ggcaaaagcc attgcattta agccaaacaa gaatgttaga ccaagttgtt tgattttctt
     7381 cataggattt ccttattagt tgttgaaagg tcgaaaggaa gattaagagg gaataaaata
     7441 gaactcaacc ggcaaaaata aatttttcga cacagatcga aaaaatagaa aatggctaaa
     7501 cttctagacg tgcatttggt ctgaaattca atgaaagtaa atagatttgc aaaaaattag
     7561 gcaaaaatga ccgctagttg cgtaaattta gttaaataaa ttcaaatagc ggctgaattg
     7621 ctttagaata tcgccatttt tatactcatt aacaacgcta ttatttggaa ttaatatgac
     7681 acaaaataat tttcgcaaag aaccggtttt tggtgaatct tcggttacct ctcaagacgc
     7741 tgaagcaacc aaaacagata cagctcaagc cccttatgtt tcgttgcgtt caaccaaagc
     7801 accggggcat acgtttaccc caattatgaa aagacctgat gctaaagtag aagatcatac
     7861 ggctgatgtc ttttcggcta agcaggcaaa agaattccaa tttactccaa gttcagaagc
     7921 tacagaagca gtagagccgg ataataccat tcattcggtt gaagaaagtg tatcaaccgc
     7981 atcttttaac gcggttgaag cacaagaaaa tgtggaaaaa gaagtggtta aacctgcacc
     8041 cgagagtttc actactgagc gtattattcc aaatgcggca acagctgccg cagcagccac
     8101 tgcggcagct gcagccacta aaaccaaaga gattaaagct aaaatgccac ctaaaacccg
     8161 ccgtttatta ttagtggcat tgttggcgtt agcattattg gtactgtttt tcttgttaaa
     8221 accaagtacg ccggaaactg tcgaagagct acaatctcag caaggtggta gcttgccgat
     8281 tgaattccga ccggttgatg aagctgaagc gaaacgtgcg gaagaacaag ctcgtgcaga
     8341 acaagaagcc gctgaagctg caaaagctca agaacaagct caagccgctc aacaagagtc
     8401 tgtaacagtt gctccagccc aaaccgagca aacaatggct aaaccgtcac aagatagcca
     8461 gtcgcaaaca caatcacaag cagtagttga gcaacctgtt gcggtgaaac cggtggaaaa
     8521 taaaccggtt gttgcacaac cggcgattaa gcctaaaacg gaaaatagcg tggtgttcca
     8581 acctgaaaca acggtaaaac aacagcctaa agcccctgct aaaactgaag tgaaaaccga
     8641 acgtgctaca ctggcagcaa aagaaacggc aaaaacagca gctaaaccag ttgagaaagc
     8701 tccgacaaaa actgaagcgg taaaagcagc accggctgcc gagtcggcaa atgcggtagc
     8761 aaccaaaaca atgactgtgc caaaaggtgt atcactaatg caagtgttcc gtgataacaa
     8821 tttaaatatc tcagacgtta atgcgatgag caaagtcaat aacgtggtga gtaatttaaa
     8881 agtaggcgag cgagtaaccg ttcgtttaga taaaaataac cgtgtggttg aaatgagcat
     8941 tggctcaggc ggcaaattta cccgtcaagc aaacggtagc tatactttta aataaataaa
     9001 atgaagaaaa agagcaacgc tacaaacgtt gctcttttat ttaaaaagga gataaaggat
     9061 gaatttattt tgcccctctt acaaacttat ctacttaacg ctaagctcag cgatgttagt
     9121 tgcttgtagt acagtggtta cccctgttga gcaaattcat caagtacaaa aggaaaaaga
     9181 gtcagtaaag aaagtgacta aactgatagc acaagcacct aaagtgagtt tatatcgttg
     9241 tgagaatgat aagaaggttg aagttgaacg ccagggacga acaaaaaaag cgttaaaaaa
     9301 ggaaatagtc acagtgagtt atcaagggac aacgcatcag ctttcacctt ctgtaacgag
     9361 agatggtaaa aaatacacta atatccgttg gacttggcat gaaacccgta gtggtaaagc
     9421 atttttgtat aacaacacta aaaaaacgtt agcggcaaat tgcataaagc agtaacaagc
     9481 ggacacaaaa agtatcgctt tttgaacgtt ggctttgcca acggcagcga agctgtgaac
     9541 aatccttaca aggattgtga ataaattttt aagagaattt tgcaaatgaa tattttagtt
     9601 ataggaccgt cttgggtggg tgatatgatg atgtcgcacg cactttatca acagcttaaa
     9661 atacagtatc cgaattgcca aattgatgta atggcacccg attggtgttg tccgctttta
     9721 gcccgtatgc ctgaggtgcg taatgcgatt tcaatgccga ttggacacgg ttcatttcgt
     9781 ttgtgtgaac gctaccgact cggaaaatcc ctgagaaatc aatatgatat ggcgattgta
     9841 ttgcctaatt cattaaagtc tgcctttatt ccactgtttg cgaaaattgc gagacgtcgt
     9901 ggttggaaag gggaaagtag atattttttc ttaaatgatc ttcgcagtaa taaaaacgac
     9961 tacccaatga tggtgcaacg ctatgtagcc ttggcgtttg aaaaggctac tgttccaacc
    10021 gcacaacagt tgccgattgc ttatccatac ctcacaactg atagcgaaca aattgagcag
    10081 accaaagcga aatttgaaaa acagttggct tatgcggaaa accgtcctgc catcggcttt
    10141 tgtccagggg ctgaatttgg accggcaaaa cgttggccgc attatcatta tgcaatattg
    10201 gcaaaaatgt tgattgagca aggctattcg gtacggttat ttggctcgaa aaaagatgaa
    10261 gccgccggtg agcaaattcg cttggcatta cctgaaaatt tacaacgcta ttgcctgaat
    10321 ttagccgggc aaaccgattt aaaccaagcg gtagatttga ttgcagattg taatgcagtc
    10381 gtgagcaatg actccggctt aatgcacatt gccgcagcac taaataaacc gctggtcgcc
    10441 ttatatggac cgaccagccc acaatatacg ccgccgttat cccaaaatgc cgagatcatg
    10501 cgcttaattg aaggcggttt gattaaaatc cgcaaaggcg aaggggcaga gggctatcac
    10561 caaagtttaa ttgatattca gcctgaaatg gtgatggaca aattagctga actgttagtt
    10621 taaatggata acaagcggtt gaatttgcca attttttgca aaaaaagacc gcttgtttgt
    10681 ttataaaaga tgaaaatttt aatcgttaaa acctcatcaa tgggagatgt attacatacg
    10741 cttccagcca taaccgatat gcaaaatgct attcccgatt taaaagtaga ttgggtggtg
    10801 gaggagaatt ttaccgaaat tcctgcgtgg cattcagcgg taaataaagt aattccggtg
    10861 gctattcgcc gctggcggaa aaacctttgc caaagacaga cttgggtaga atggcagcag
    10921 tttttaaaac agctaaaaag tgagcagtat gatgcggtaa ttgatgctca agggctgatt
    10981 aaaagtgcgg tgttagtaac tcgccaagcc aaaggcaaaa aatttggcta tgataaaaac
    11041 tctgcccgag aagggttaag tagtctgttt tacgatgaaa cgtttaatat cccctaccaa
    11101 caacacgctg tagaacgcat cagaaaatta tgtgcaaaat cattaggtta tgctttgcca
    11161 accgaacggg gcgattattg cattgcacaa cattttgcaa aaaatcctca aaaaacgacc
    11221 gcttacatta tgctgattca cgccactacc cgagcggata aacattggca agaagcctat
    11281 tgggcggagt tgattcaagc gttggataag cacaatctgg cagtcagatt gccttgggga
    11341 aaccaagccg aaaaagaacg ggcggagcgt ttagcgagtg tggcgaataa tgctaaggta
    11401 ttgccaaaaa tgagcttaac cgatattgct actcaacttg cgggagcagc ggcagtggtg
    11461 tcggtggata ccggcttgag ccatttggcg gctgcgttag ataagccaaa tgtgatttta
    11521 tatggggcaa ccgatccaaa acttatcggg gcttacgggc aaaatcagtt ttatctaaaa
    11581 gcagataaaa tggaaaatat tacctcttca caagtgctag aaaaattact tccattgatt
    11641 aacaaatgat cattgttgtt ctcttactgt gcttgacttt tatccacgtt caatttagaa
    11701 ttcaccgtcc tttcgtgtga aaggatgttt ttaattttat ttttaataat tttaactgga
    11761 gcttttttaa tggcaactat caaccagcta gtacgcaaac cgcgtgtgaa aaaggttgta
    11821 aaaagtaacg ttcctgcatt agaggcttgc ccgcagaaac gtggcgtgtg tactcgtgta
    11881 tacactacta cacctaaaaa accgaactca gcattacgta aagtatgtcg tattcgttta
    11941 acaaatggct ttgaagtaac ttcatacatc ggtggtgaag gtcacaacct tcaagaacac
    12001 agtgttgtat taatccgtgg tggtcgtgtt aaagacttac cgggtgttcg ttaccatact
    12061 gtacgtggtg cacttgactg tgcaggcgtt aaagatcgta aacaaggtcg ttctaaatac
    12121 ggcgttaaac gtcctaaagc ttaatggttc tccgttgagt aaggccaaac gtctaaattt
    12181 taatatttaa accataaact ccagtcaaga tgccttaagg cagattagat gagttttgga
    12241 tatcctgaag atttaatata cggagaaatt tccaatgcca cgtcgtcgta gtattgaacc
    12301 acgcaaaatt cttccagatc cgaagttcgg ttcagaatta cttgcaaaat ttattaacgt
    12361 gttaatggta gatggtaaaa aatctactgc agaaaaaatc gtttacggtg cattagaaac
    12421 tttaacacaa cgttctggta aagaagcgtt agaagctttc gaaatcgcat tagaaaacgt
    12481 acgtccaact gttgaggtta aatctcgccg tgtgggtggt tctacttacc aagttcctgt
    12541 agaagttcgc ccaacccgtc gtaatgcttt agcaatgcgt tggatcgtag aagccgctcg
    12601 taaacgtggt gacaaatcaa tggcattacg tttagctaac gaattatcag atgcagcaga
    12661 caacaaaggt tcagcagtga agaaacgtga agacgttcac cgtatggctg aagctaacaa
    12721 agcgtttgct cacttccgtt ggtaatcgtt taagcaaact tatcaaaggc ttcatctcag
    12781 tttgcggtga agccttaccc ttattaagaa ttttaattta aaccccaaac aaggtaataa
    12841 ataaaaatgg ctcgtacaac ccctatttca ctttaccgta acatcggtat cagtgcgcac
    12901 atcgatgcgg gtaaaacaac tactacagag cgtatcttgt tctatacagg tgtaagtcac
    12961 aaaatcggtg aagttcacga tggtgctgca acaatggact ggatggaaca agaacaagag
    13021 cgtggtatca cgatcacatc tgctgcaaca acagcattct ggtctggtat gtcacaacaa
    13081 tatccacaac accgtatcaa cgttattgat actccgggac acgttgactt tactatcgaa
    13141 gtagaacgtt caatgcgtgt acttgatggt gcggtgatgg tttattgtgc agttggtggt
    13201 gttcaaccac aatctgaaac tgtatggcgt caagctaaca aatataaagt gccacgtatc
    13261 gcgttcgtaa acaaaatgga ccgtacaggt gcaaacttct tacgtgttgt tgagcaaatc
    13321 aaaacgcgtt taggtggtaa ctcagttgca ttacaacttc caatcggtgc agaagacagc
    13381 ttcaaaggtg ttgttgattt aatcaaaatg aaagcaatca actggaacga agctgatcaa
    13441 ggtatgacct tcacttatga agatattccg gcagatatgc ttgaagcttg tgaagaacac
    13501 cgtgcaatgc ttgttgaagc agcagctgaa gcttctgaag aattaatgga aaaattcttc
    13561 tctggtgaag aattaactga agatgaaatc aaagcagcat tacgtcaacg tgtattagca
    13621 ggtgaagtaa tccctgtttg ctgtggttct gcatttaaaa acaaaggtgt acaagcaatg
    13681 cttgatgcgg taatcgatta cttaccggca ccaactgata ttcctgcaat taaaggtatc
    13741 aatgaagatg aaactgaagg tgagcgtcac gcaagcgacg atgagccatt tgcttcatta
    13801 gcattcaaaa ttgcaacaga cccattcgta ggtaacttaa ccttcttccg tgtttactct
    13861 ggtgtaatta actctggtga tacagtttac aactcagtaa aacaaaaacg tgaacgtttt
    13921 ggtcgtatcg tacagatgca cgcaaacaaa cgtgaagaga tcaaagaagt tcgtgcgggc
    13981 gatatcgctg cagcaatcgg tttaaaagat gttggtacag gtgacacatt atgtgcaatc
    14041 gatgcaccaa tcattcttga gcgtatggaa ttccctgagc cggtaatctc tgttgcggtt
    14101 gaaccaaaaa ccaaagctga ccaagagaaa atgggcttag ctttaggtcg tttagcacaa
    14161 gaagaccctt cattccgtgt tcacacagat gaagaatctg gtgaaacgat catttcaggt
    14221 atgggtgagt tacacttaga catcatcgtt gaccgtatga aacgtgagtt taaagtggaa
    14281 gcaaatatcg gtaaaccaca agtatcttac cgtgaaacta tccgtactcg tgttaatgat
    14341 gttgaaggta aacacgcaaa acaatctggt ggtcgtggtc aatatggtca cgttgtgatc
    14401 gacttatacc cattagatgc tgaaggtccg ggttatgagt ttgtaaacga gatcaaaggt
    14461 ggtgtaatcc ctggtgaata cattcctgcg gttgataaag gtatccaaga acagcttaaa
    14521 tctggtccgt tagcaggtta cccggtagta gatttaggtg tgcgtttaca cttcggttca
    14581 taccacgatg ttgactcatc tgaacttgcg tttaaacttg ctgcatcatt agcatttaaa
    14641 gcggcgttcg caaaagcaag cccggtatta cttgagccaa tcatgaaagt ggaagttgaa
    14701 actccaccgg attacgtggg tgatgtaatc ggtgacttaa gccgtcgtcg tgcaatggtt
    14761 aacggtcaag aagcgaacga gttcgttgtt aagatcaatg ctgaagttcc actttcagaa
    14821 atgtttggtt atgcaacaga cttacgttca caaactcaag gtcgtgcatc atactctatg
    14881 gaacctttaa aatatgctga agcaccgaaa aacgttgctg atgcaattat tgaagctcgt
    14941 agaaaataat ttgtttaacc tgagccatag caatagggct atggctcatt ttttaggaag
    15001 atattaaagt gtctaaagaa aaatttgaac gtacaaaacc gcacgttaat gtgggtacaa
    15061 tcggccacgt tgaccatggt aaaacaactt taacagcagc aatcactacc gtattagcaa
    15121 aacacttcgg tggtgcagct cgtgcatttg accaaatcga taacgcgcca gaagaaaaag
    15181 cgcgtggtat caccatcaac acttcacacg ttgagtacga tacagcaact cgtcactacg
    15241 cacacgttga ctgcccggga cacgcggact atgttaaaaa catgattacc ggtgcggcac
    15301 aaatggacgg cgctatctta gtagtagcag caactgacgg tccaatgcca caaactcgtg
    15361 agcacatctt attaggtcgc caagtaggtg taccatacat catcgtattc ttaaacaaat
    15421 gcgacatggt agatgacgaa gagttattag aattagttga gatggaagtg cgtgaacttc
    15481 tttcacaata cgacttccca ggtgatgaca ctccaatcgt acgtggttca gcgttacaag
    15541 cgttaaacgg cgtagcagag tgggaagaga aaatccttga attagcaaac cacttagaca
    15601 catacattcc agagcctgag cgtgcgattg ataaaccatt cttattacca atcgaagacg
    15661 tattctcaat ttcaggtcgt ggtacagtag taacaggtcg tgttgagcgt ggtatcatcc
    15721 gcactggtga tgaagttgaa atcgtaggta tcaaagatac agcgaaaaca accgtaacag
    15781 gtgttgagat gttccgtaaa ttattagacg aaggtcgtgc gggtgagaac gtaggtgcat
    15841 tattacgtgg tactaaacgt gaagaaatcg aacgtggtca agtattagcg aaaccgggtt
    15901 caatcactcc acacacagac ttcgaatcag aagtttacgt attatcaaaa gaagaaggtg
    15961 gtcgtcacac tccattcttc aaaggttacc gtccacagtt ctacttccgt acaacggacg
    16021 taacaggtac aatcgaatta ccggaaggtg tagagatggt aatgccgggc gacaacatca
    16081 aaatgactgt tagcctaatt cacccaatcg cgatggacga aggtttacgt tttgcgattc
    16141 gtgaaggtgg tcgtacagta ggtgcgggcg ttgtagctaa aatcatcaaa taattaagat
    16201 tgtttgataa attgaaaagc taaataaaaa ctagaaagag gcatatcgaa aggtatgcct
    16261 cttttgcttt tatgccgatt aagctagcca tatcatatca tttcatttgc aaaaatcggt
    16321 gaaaaaagac cgcttgtagg caagcccatt gacaagcagt cagattttag ggatttttta
    16381 caaaactgtt tatttgcgaa tgagtttctt ctcgacagtt tcttgataga acgctacaat
    16441 aaccgtctat ttgtatatct tttttatatc cctaaaccga ggtttaagaa tgtcattttc
    16501 aattgaaaca ttagaaggct taaaacgccg tgttactatt aacgtaccag ctgataaaat
    16561 cgaagcagca tacaaagaac aattaaaagg ctatgcgaaa aatgctcgtg tagatggctt
    16621 ccgtaaaggt aaagtgccac actcaattat cgaacaacgt tttggtattg cagcccgtca
    16681 agatgtgtta tctgatgaaa tgcaacgtgc attctttgaa gccgtcattg ctgaaaaaat
    16741 caacttggca ggtcgcccta ctttcacgcc aaacaactac caaccaggtc aagacttcag
    16801 ctttactgcg gaatttgaag tattcccaga agtggaatta aaaggtttag agaatatcga
    16861 agtagaaaaa ccggttgttg aaatcgcaga cgctgattta gacaaaatgg tagatgtatt
    16921 acgcaaacaa caagcgactt ggtcagaaag ccaagaggct gcaaaagccg aatctcgtgt
    16981 aactattgat ttcgttggtt cagtagatgg tgaagaattc gaaggcggta aagcatcaga
    17041 cttcgtgtta tttatggggc aaggtcgtat gatcccgggg tttgaagacg gaatcgtagg
    17101 tcgtaaagcg ggtgagcaat tcgacattga tgtgactttc ccagaagaat accacgctga
    17161 aaacttaaaa ggcaaagcag cgaaatttgc aattaccttg aaaaaagtag aagagatggt
    17221 attaccggaa ttaaccgaag agtttgtgaa aaaattcggt aatgcaaaat cagtggaaga
    17281 attacgcgca gaaattaaga aaaatatgca acgtgaactt aaaaatgcag tcacttcacg
    17341 tgtgaaaact caagtaatca acggcttaat tgctcaaaat gatgttgaag tgccggctgc
    17401 tgcggttgaa gaagaaatca acgtattacg ccaacaagcg gtgcaacgtt ttggtggtaa
    17461 gcctgaaatg gcagctcaat taccggctga attatttgaa gcagaagcta aacgccgtgt
    17521 tcaagtgggc ttattattat cttcaatcat cggttctaac gaattaaaag tagatgaaaa
    17581 acgtgttgaa gagatgatcg cagatatcgc ttcagcttac gaacaaccgg ctgaagtggt
    17641 tgctcactat gcgaaaaacc gtcaattaac tgaaaatatc cgcaatgtgg tattagaaga
    17701 gcaagcggtt gatgcagtgc tagcgaaagc gaaagtgact gaaaaaacaa tgtcatttga
    17761 cgaagtaatg tcacaacaag ctcaataatt tccttataag gtgggctttt gctcaccttt
    17821 tattactttt acaagcggtt aaatttagtg ataaatttgc atcaaaacga ccgcttattt
    17881 tttgatgtta aggaaattga attatggaac aactaacttt tgctcaacaa ttagagcaat
    17941 tttttgccaa tcataccttg atggtgtttg cttgggttgc attattgatt gcggtaattt
    18001 ttagctttta taaaagtgca acgcaaaaat ataaaattgt cgataacgca caggctacac
    18061 agctgattaa taaagaagag gcagtagtgg ttgatttacg ttctgatgaa gagttccgtg
    18121 ccggtcatat tattgatagc attcacgtgt taccgtcaga cattaaagca gctaaaatca
    18181 atcagattga taaatacaaa gctcgcccgg taattgtagt agacactaat gacttcactt
    18241 caggtggtgt tgcggcagat cttgctaaac aaggctttag cagagtttat gtattaaaag
    18301 aagggattgg cggctggcgt gcagcaagcc taccaactat taaaaaacat aaataatcta
    18361 ttattaagga aattttatgt cagaagaaaa tcaagttgca tcaacagaag aagctacaca
    18421 aacccctttt gagcttcaaa ttcaacgcat ttatgtaaaa gatgtttcat ttgaagcacc
    18481 aaatttaccg actattttcc aacaagagtg gaaaccacaa ttaggctttg agttagatac
    18541 tgaaaccaaa gaaattggtg aagatttata cgaagttacc ttacacatta cggtgcaaac
    18601 tacgttagaa gacagcaatg atgtcgcttt catttgtgaa gtaaaacaag caggtgtgtt
    18661 tactattaaa ggtttagaag gcattcaact tgctcactgc ttagcttcac aatgtccgaa
    18721 tgtgctttat ccttatgctc gtgagctaat ctcaagcctt gtgaatcgtg gtacattccc
    18781 ggcattaaat ctctcaccgg taaactttga tgcgttattt atggattatc tccaacgcca
    18841 agaagaaagt gcagaagagc cggctttagc gaactaagca ttttagatag aaaataggta
    18901 tgcaaggcat acctattttt ttacaagcgg ttattttttc tactattttt tgcaattttc
    18961 taaataagcc gaacagagga aatatgagtg aaatctattc tgccccaatc acggtattag
    19021 gtgcaggttc ttatggaaca gctttagcca ttgccctttc tcgaaatggt cacaaaacct
    19081 atttatgggg gcataatccc gacaaaatgg ccgttttggc atcagagcga atgaaccaag
    19141 attttctgcc tgatattgta ttcccggaag ccttagaaat tgtcgcagat cttgctacag
    19201 cggtacaaaa atcgaaagat ctgctgattg tggtgccaag tcatgtattc tctgaagtat
    19261 tggctcaaat caagcctttt ttgtcccaag atcaccgtat aatgtgggca accaaagggc
    19321 tggagcgaga taccgggcgt ttgttgcaaa cggtagctaa ggaaattttg ggggaaattt
    19381 acccgcttgc ggtgctttcc ggtccgactt ttgccaaaga actggcggca ggcttgccaa
    19441 cagcgatttc gcttgcctca actgatcctg tttttgccga tcaaatgcaa aaacggagtc
    19501 actgttccaa agcgttccga gtttacctca acaatgatat tatcggtgtg caactcggtg
    19561 gggctattaa aaatgtgatt gcaattggtg ccggtatttc agacggaatg ggattcgggg
    19621 cgaatgctcg taccgccttg attactcgag ggctggcgga gattagccgt ttgggtgttt
    19681 cgctcggggc tgatccgaaa acctttaccg gaatggcggg gcttggagat ttagtgctga
    19741 cgtgtaccga taaccaatcc cgaaaccgcc gatttggttt ggcgttaggg caaggaaaat
    19801 cggcagaagt cgcgatagcg gaaatcggtc aagtggtaga aggattttat aataccaaag
    19861 aagcctattt gctcgctcaa acacagggcg ttgaaatgcc gattgtagaa caaatttacc
    19921 aaatgttatt ttgtggcaaa caggcttcgg atgtggtgaa aaccttgttg gggcgtgaac
    19981 gaaaaggcga ataaagaaag gagaataaaa tgcagcagag tgaaattaat cagatttggc
    20041 aagcaattcg agatgaagcc aaagagctgg cgaattgtga acctatgtta gcaagttttt
    20101 tccacgctac cattttaaaa caccataatc taggcgatgc gttaagttat attttggcga
    20161 ataagttaga aaacccgatt atgccggcaa tcgccttaaa agaaattatt gaggaagctt
    20221 atcgagcaga gccacaaatt attgctagtg cagcttgtga tattaatgcg gtcagaacta
    20281 gagatcctgc ggtggacaaa tggagtacac ctctgctgta cttaaaaggc ttccacgctt
    20341 tacaaagcta tcgggtgacg cattatcttt ggaatcaagg caggaaagca ttagcggttt
    20401 atttacaaaa tgaaatttct gttgcctttg atgtggatat tcatcctgcg gcaaaggtcg
    20461 gttgcggaat tatgtttgac cacgccaccg gtattgtggt gggtgaaacc tctgtgatcg
    20521 aaaatgatgt ctcgatttta caaggtgtaa cactaggcgg tacagggaaa gaaaatggcg
    20581 accgccaccc gaaaatccgt gaaggcgtga tgattggagc cggtgcaaaa attctcggta
    20641 atattgaaat cggacgctat tctaaaatcg gggcaaattc agtggtgcta caacctgtgc
    20701 ctgatcacgc cacagcagca ggtgtaccgg ctcgcattat cggcaaatcc tctgaacaaa
    20761 aaccggcttt tgatatgaat caatactttg aagatgagca aggtttgttt ggtgatggga
    20821 tttaggtaag agttattcct ttaatttatg atttagacat tgctaagtac aagttgcaat
    20881 taacctttaa tgattttcag aactactata atggtaaagg ggatttaact atgttttctt
    20941 tttatggtaa gaaaacatgg gaaaatggca tttatgtagg gattgatggt agcattgggc
    21001 gtgcgaataa caaattaagc catcaaagcc agacgataaa actagccaga aatgtatatt
    21061 ctttaggatt aacggtaggt aaaacgttgg aagttgcaag ttttaaccta caaccgtcat
    21121 ttggtatgcg ctatcatcat ttaacatctg caaatgccca attagagaac acaaaatttg
    21181 agactgatag ggtagatctt ttggccattc aagc
//
LOCUS       DANLZD010000027        20884 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.027, whole genome shotgun sequence.
ACCESSION   DANLZD010000027 DANLZD010000000
VERSION     DANLZD010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20884)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20884)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20884
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.027"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(56..1405)
                     /locus_tag="PXE26_000764"
     CDS             complement(56..1405)
                     /locus_tag="PXE26_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HDL5593370.1"
                     /translation="MLLFIMFAAIILLLVLIMKFKVHAFVALIIVSLLTALAAGIPVD
                     KILPTLLNGFGSTLASVALLVGLGAMIGRLLEITGGAKVLADTLINKFGKERAPFALG
                     VASLLFGFPIFFDAGLVVMLPIIFSVAKQFGGSVLRYAFPSAGAFAVMHAFLPPHPGP
                     VASGDLLGVNMGLLVLVGLVCAIPTWYIGTYLFSQFISKRIHVDLPKAFLNGLSANEM
                     AVQNPPSFGKVLTVLVLPIILILFDTGLNTLSVAKVIDGSEMWVQSLRLIGKTPVALL
                     ITLIVAIMLLRDNRSFDQIEKICNNALGPICSIVLVTGAGGMFGGVLRASGIGDVLSE
                     MMKDTGMPIVVAAFIIATVFRVAQGSATVALTTTAALIAPTVAAATDLSQFDLCFIVI
                     AIASGATVLSHVNDSGFWLMSRFLEMDEKTTLKTWTMLETAIGLTGFACALIGSWLL"
     gene            1592..2107
                     /locus_tag="PXE26_000765"
     CDS             1592..2107
                     /locus_tag="PXE26_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HDL5593371.1"
                     /translation="MANGKAFILMGVSSTGKTSVGTAVAQRLGIKLIDGDDLHPRANI
                     LKMASGTPLNDADRTPWLERINDAVFSFEQKSEKGIIVCSALKKKYRDQIRQGNADVT
                     FLFLHGSFELVLARMQQRKGHFMKPEMLQSQFNTLEIPQADEPDVIFIDIDGSFDEVV
                     ERCVKAVEPLL"
     gene            complement(2161..3159)
                     /gene="gntR"
                     /locus_tag="PXE26_000766"
     CDS             complement(2161..3159)
                     /gene="gntR"
                     /locus_tag="PXE26_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate operon transcriptional repressor GntR"
                     /protein_id="HDL5593372.1"
                     /translation="MRKPKRPTLQDIATHLGITKMTVSRFLRDPNTVAKETGERIAQA
                     IELFGYIPNRAPDILSNAKSRAIGVLVPSLTNQVFADVIKGIEQITDQASYQTMLAHY
                     GYSEQKEEQRIESLLSYNIDGIILSENHHSPRTLKMLEVANIPVIEIMESGECGIQQA
                     VGFDNISAAQAMVETMIHRGCRQVVYFGARMDKRSQLKMQGYEQAMLKHGLSPHSITT
                     AEHSSFTLGASQLKQALQHIPQLDGIFCTNDDLAIGALFECQRLGIHVPQQIKIAGFH
                     GHDVGQSLTPQLASVITPRLEIGRVAAQELLNRIHGVPQQSSIINLGYQIHLGESV"
     gene            complement(3252..4412)
                     /locus_tag="PXE26_000767"
     CDS             complement(3252..4412)
                     /locus_tag="PXE26_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
                     /protein_id="HDL5593373.1"
                     /translation="MIEQSYKIALLFNANKIYDRGVMQGIGQFIQASQCTWDIFVEDD
                     FVYHKNSIESLSIDGIIADFDDLETVELLKDIDVPIVAVGGSYQNPDYYPDLPYVATD
                     NYALVEAAFLHLKQKGINQFAFYGYPAETEKHWAIERKNAFIQLMEKYEHHPNCYIGD
                     QFHSDNWVELQAKLGEWLQTLPAHTGIIAVTDARARHLLQTCEHLKIAVPEQLCVIGI
                     DNEELIQYLSRVSLSSVTQGTSQIGYHAAKLLYRKLNNLPVSTKPILIPPVKVEERRS
                     TDYRSLQDPMVIQAMHFIRHRACQGIKVEQVLDHLKISRSNLEQRFKQEMNKTIHQVI
                     HEEKLARATYMLKFTEISTQEIANVCGYPSLQYFYAVFKKEFGKTPKEFRQE"
     gene            complement(4535..4921)
                     /gene="rplQ"
                     /locus_tag="PXE26_000768"
     CDS             complement(4535..4921)
                     /gene="rplQ"
                     /locus_tag="PXE26_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HDL5593374.1"
                     /translation="MRHRKSGRQLNRNSSHRQAMFRNMASALVEHEIIKTTLPKAKEL
                     RRVVEPLITLAKADSVANRRLAFARTRNVDTVAKLFNELGPRFAQRAGGYTRILKCGF
                     RAGDNAPMAYIELVDRPEVATEAAAE"
     gene            complement(4957..5946)
                     /gene="rpoA"
                     /locus_tag="PXE26_000769"
     CDS             complement(4957..5946)
                     /gene="rpoA"
                     /locus_tag="PXE26_000769"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HDL5593375.1"
                     /translation="MQGSVTEFLKPHLVNIEQVSSTHAKVTLEPLERGFGHTLGNALR
                     RILLSSMPGCAVTEVEIDGVLHEYSSKEGVQEDILEVLLNLKGLAVKVQNKDDIILTL
                     NKSGIGPVTAADITHDGDVEIVNPDHVICHLTDKNASINMRIRVQRGRGYVPASARLH
                     TQNDDRPIGRLLVDARFSPVDRIAYNVEAARVEQRTDLDKLVIEMETNGTLDPEEAIR
                     RAATILAEQLAAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAETIH
                     YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIAED"
     gene            complement(5977..6603)
                     /gene="rpsD"
                     /locus_tag="PXE26_000770"
     CDS             complement(5977..6603)
                     /gene="rpsD"
                     /locus_tag="PXE26_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HDL5593376.1"
                     /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG
                     ARKPRLSDYGSQLREKQKVRRIYGILERQFRNYYTEANRLKGNTGENLLVLLEGRLDN
                     VVYRMGFAATRAEARQLVSHKSIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKAS
                     LELATQREKPTWLEVDATKMEGVFKRRPERSDLSADINEHLIVELYSK"
     gene            complement(6632..7021)
                     /gene="rpsK"
                     /locus_tag="PXE26_000771"
     CDS             complement(6632..7021)
                     /gene="rpsK"
                     /locus_tag="PXE26_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HDL5593377.1"
                     /translation="MAKTPVRARKRVKKQIADGVAHIHASFNNTIVTITDRQGNALAW
                     ATAGGSGFRGSRKSTPFAAQVAAERCAEMVKEFGLKNLEVMVKGPGPGRESTIRALNA
                     AGFRITNITDVTPIPHNGCRPPKKRRV"
     gene            complement(7038..7394)
                     /gene="rpsM"
                     /locus_tag="PXE26_000772"
     CDS             complement(7038..7394)
                     /gene="rpsM"
                     /locus_tag="PXE26_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019935869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HDL5593378.1"
                     /translation="MARIAGINIPDQKHTVIALTAIYGIGKTRAKAICAATGIAEDVK
                     IRELSEEQIEKLREEVGKFTVEGDLRREVTLSIKRLLDLGCYRGLRHRRSLPVRGQRT
                     KTNARTRKGPRKPIKK"
     gene            complement(7532..7645)
                     /gene="rpmJ"
                     /locus_tag="PXE26_000773"
     CDS             complement(7532..7645)
                     /gene="rpmJ"
                     /locus_tag="PXE26_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006232360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HDL5593379.1"
                     /translation="MKVRASVKRMCRNCKVIKREGVVRVICSDPKHKQRQG"
     gene            complement(7670..8989)
                     /gene="secY"
                     /locus_tag="PXE26_000774"
     CDS             complement(7670..8989)
                     /gene="secY"
                     /locus_tag="PXE26_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HDL5593380.1"
                     /translation="MAKQPGYQGSTQKGTGELKSRLLFVLGALIVFRIGSFIPVPGID
                     ASVLSELIRQQQGTIIDMFNMFSGGALSRASIFALGIMPYISASIIIQLLTAIHPPLA
                     ELKKEGEAGRRKISKYTRYGTLLLAFIQSIGISLALPNMVHGLVPNPSILFYVTSVVS
                     LVTGTMFLMWLGEQITERGIGNGISLIIFTGIVADLPATIGQTIEQARQGELSFIVLL
                     LVAIIAFAVTYFVVFVERGQRRIVVNYASRQQGRMMAPARTSHLPLKVNMAGVIPAIF
                     ASSIILFPASITQWFGQSEGFEWLFNLSQLLQPGQPLYVVLFTMAVIFFAFFYTGMQY
                     NPRDTADNLKKSGAFVPGYRPGEQTSRYIDKVMTRLTLIGALYIAFVCLVPYIITSLW
                     KVPFQLGGTSLLIVVVVIMDFIAQVQSHLMSQQYDSVLKKANLKGLN"
     gene            complement(8992..9426)
                     /gene="rplO"
                     /locus_tag="PXE26_000775"
     CDS             complement(8992..9426)
                     /gene="rplO"
                     /locus_tag="PXE26_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011095501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HDL5593381.1"
                     /translation="MRLNSLSPAEGAKHSAKRLGRGIGSGLGKTGGRGHKGQKSRTGG
                     GVRRGFEGGQMPLYRRLPKFGFTSLKSFHVAEIRLNDLAKVDGNEVTLETLKAANIIT
                     KDILSAKVILAGKIERAVVVKGLRVTKGAKAAIEAAGGSIEE"
     gene            complement(9431..9607)
                     /gene="rpmD"
                     /locus_tag="PXE26_000776"
     CDS             complement(9431..9607)
                     /gene="rpmD"
                     /locus_tag="PXE26_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012147215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HDL5593382.1"
                     /translation="MAKIKVTQTRSSIARLPKHKATLKGLGLRHIRHTVELEDTPAVR
                     GMINQVSYMVKVEE"
     gene            complement(9614..10114)
                     /gene="rpsE"
                     /locus_tag="PXE26_000777"
     CDS             complement(9614..10114)
                     /gene="rpsE"
                     /locus_tag="PXE26_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004106339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HDL5593383.1"
                     /translation="MSNIEKQAGELQEKLIAVNRVSKTVKGGRIMSFTALTVVGDGNG
                     RVGFGHGKAREVPAAIQKAMEKARRNMINVALNEGTLQHPVKGSHTGSRVFMQPASEG
                     TGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALENMKSPEMVAAKRGKT
                     VEEILG"
     gene            complement(10129..10482)
                     /gene="rplR"
                     /locus_tag="PXE26_000778"
     CDS             complement(10129..10482)
                     /gene="rplR"
                     /locus_tag="PXE26_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HDL5593384.1"
                     /translation="MDKKVARIRRASRARHLMREQGATRLVVHRTPRHIYAQVIAPNG
                     SEVLAAASTVEKVIKEQVKYTGNKEAAAVVGKIVAERAIAKGIKAVAFDRSGFKYHGR
                     VQSLADAAREAGLQF"
     gene            complement(10497..11030)
                     /gene="rplF"
                     /locus_tag="PXE26_000779"
     CDS             complement(10497..11030)
                     /gene="rplF"
                     /locus_tag="PXE26_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HDL5593385.1"
                     /translation="MSRVAKAPVNIPAGVEVKLNGQLLTVKGKNGELSREIHNAVEVK
                     QEADALTFAPREGIANADAQAGTARALVNNMVIGVTEGFTKKLQLVGVGYRAQMKGNA
                     VALSLGFSHPVEHTLPAGVTGECPSQTEIILKSADKQLIGQVAADIRAYRKPEPYKGK
                     GVRYSDEVVRTKEAKKK"
     gene            complement(11047..11439)
                     /gene="rpsH"
                     /locus_tag="PXE26_000780"
     CDS             complement(11047..11439)
                     /gene="rpsH"
                     /locus_tag="PXE26_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HDL5593386.1"
                     /translation="MSMQDPIADMLTRIRNGQAANKVAISMPSSKLKVAIANVLAEEG
                     YIESVKVVEGVKPELEITLKYFQNKPVVESIQRVSRPGLRIYKRKDELPKVMGGLGIA
                     VVSTSKGVMTDRAARQAGLGGEIICYVA"
     gene            complement(11476..11781)
                     /gene="rpsN"
                     /locus_tag="PXE26_000781"
     CDS             complement(11476..11781)
                     /gene="rpsN"
                     /locus_tag="PXE26_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HDL5593387.1"
                     /translation="MAKQSMIARDVKRAKLADKFYAKREELKKIISDVNASDEDRWAA
                     VLKLQTLPRDSSPIRQRNRCRQTGRPHGVLRKFGLSRIKVREAAMRGEIPGLKKASW"
     gene            complement(11793..12332)
                     /gene="rplE"
                     /locus_tag="PXE26_000782"
     CDS             complement(11793..12332)
                     /gene="rplE"
                     /locus_tag="PXE26_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HDL5593388.1"
                     /translation="MAKLHDYYRDTVVNELKAKFNYSSVMQVPRIEKITLNMGVGEAL
                     TDKKLLDNAVADLAAISGQKPLVTKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER
                     LITIAVPRIRDFRGLNAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTSA
                     KTDEEGQALLAAFNFPFRK"
     gene            complement(12350..12661)
                     /gene="rplX"
                     /locus_tag="PXE26_000783"
     CDS             complement(12350..12661)
                     /gene="rplX"
                     /locus_tag="PXE26_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000729185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HDL5593389.1"
                     /translation="MAAKIRQNDEVIVLTGKDKGKRGKVTKVLPNGKVFVEGINIITK
                     HEKPVPALGKAGGLVKKEAAIDVSNVAIFNPETNKADRVGFRFEDGKKVRFFKSNEKT
                     I"
     gene            complement(12672..13043)
                     /gene="rplN"
                     /locus_tag="PXE26_000784"
     CDS             complement(12672..13043)
                     /gene="rplN"
                     /locus_tag="PXE26_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HDL5593390.1"
                     /translation="MIQEQTMLDVADNSGARSVMCIKVLGGSHRRYAAIGDIIKVTVK
                     EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGAVIRFDGNACVILNNNTEQPIGTRIFGP
                     VTRELRSEKFMKIISLAPEVL"
     gene            complement(13266..15101)
                     /gene="glmS"
                     /locus_tag="PXE26_000785"
     CDS             complement(13266..15101)
                     /gene="glmS"
                     /locus_tag="PXE26_000785"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HDL5593391.1"
                     /translation="MCGIVGAVAQRDIAEILVDGLHRLEYRGYDSAGVAVLNADDKTM
                     QIVRRVGKVKALDEALDTKPLLGGTGIAHTRWATHGEPSETNAHPHRSGKIAVVHNGI
                     IENYEELKIVLQERGYVFQSQTDTEVIAHLVEWELRSASSLLEAVQKTVVQLRGAYGT
                     VVLNEEEPEHLIVARSGSPLVIGYGVGENFLASDPLALLSVTRRFAYLEEGDVAEITR
                     RTVDIYDREGNKAEREIHEGNFEADAADKGQYRHYMQKEIFEQPVAIMNTLDGRIKDG
                     KVDISAIAPNAAEILSKVEHVQIVACGTSYNAGMVSRYWFESIAGVSCDVEIASEFRY
                     RKFVTRPNSLLITLSQSGETADTLAALRLAKESGYMAAMTVCNVASSSLVRESDFAFL
                     TKAGVEIGVASTKAFTTQLTCLLLLNVAIGRLQGRMSEEQEHHIVQSLQRLPAQIESA
                     LVFDKQIEKLSEDFADKHHTLFLGRGEYYPVAMESALKLKEISYIHAEAYAAGELKHG
                     PLALIDSDMPVVVVAPENDLLEKVKSNIEEVRARGGQLYVFADHDAGFEEAEGFKTIV
                     MPKVDEVTAPIFYTVPLQLLSYHIALIKGTDVDQPRNLAKAVTVE"
     gene            complement(15149..15910)
                     /locus_tag="PXE26_000786"
     CDS             complement(15149..15910)
                     /locus_tag="PXE26_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR family transcriptional regulator"
                     /protein_id="HDL5593392.1"
                     /translation="MSKRNTQQRRHLIVQMVQEKNEVSVDELAHFFETSEVTIRKDLT
                     ALEESGFLLRKYGGAVKIPSEMMEEAFIEQLSIQKKMIAQAARDCIRDHNRIIIDSGS
                     TTGALVKALNQTGLVVMTNSLNLATELTSLECEPTVLMTGGTWDSRSESFQGKVAEQV
                     LRSYDFDQLFIGADGLDLARGTTTFNELVGLSQVMAEVSREVIVLIESQKIGRKMPNI
                     ELKWQNITKIITDSQLSFETKEQIEKMGVEVVIAK"
     gene            complement(16067..16267)
                     /locus_tag="PXE26_000787"
     CDS             complement(16067..16267)
                     /locus_tag="PXE26_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HDL5593393.1"
                     /translation="MKSILKVVGAMVLMVAVSGCNNMTKTQRNTAIGAAIGGVAGHAI
                     GESTGATLGGAALGGVIGSQIK"
     gene            16492..17526
                     /locus_tag="PXE26_000788"
     CDS             16492..17526
                     /locus_tag="PXE26_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5593394.1"
                     /translation="MKLKKLSLALSTLLLGSAFANSALAEGRLTVYCSATNELCEQEV
                     QAFGKKYNVKVAFVRNGSGSTLAKIEAEKNNPQADVWYGGTLDPHSQAAEMGLLEPYK
                     SPNLEQIIEKFRDPAKLKGNYSSAVYMGILGYGVNLDRIKKLGIEKVPSTWEDLLDPR
                     LAGEIQIADPQSSGTAYTAIATFVQLLGEEKAFDYFRKLHKNISQYTKSGITPARNTA
                     RGETAIGIGFLHDYAIEKKNGANIEMTAPTDGTGYELGGVSILKGARNLDNAKLFVDW
                     SLSKEAQELSWQKGNAFQVLTNTTAESSPYALDPKNLNLINYDFEKYGSSEERKRLID
                     KWVNEVKLAK"
     gene            17594..19630
                     /locus_tag="PXE26_000789"
     CDS             17594..19630
                     /locus_tag="PXE26_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016534092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5593395.1"
                     /translation="MQNFSFSRPLVWVLIGLLGFLLLPSKALDYGLFDSTSDELLAAM
                     GWASLNITWAWFLPLLVFLLPNSTACKTRAKLELVGLGVLFAFIFLSAIVLKISLGYA
                     VLPLIIAIMGLATPNLATLKVMQGDRFIIGSLLSIILLIFFFIVYPTIAIFVSMFYNG
                     SEFVPSQVLTILQQPYVVRVIGNSLSVAGTVGVLSTLFGLAFALYTTRIAKRSAFIGR
                     IFSILPIVTPPFVVGLGVTLMLGRSGYVTEFLVDYFGFANNWLYGFTGIVIAHTLALT
                     PMSFMILEGALKSIHPSVEEAAYTLRSNRYQAFFNIIFPLLKPALANSFLVVAIQSLA
                     DFSTPLVLGGSFDVIATQIYFYIAGSQLDYASASTLGAILLVFSLAIFVIQYLWIGNR
                     SYVTVSGKSYRGDVQDLPSGMKWLIICTLLFWGTFNLVLYGSIFYGSFTVNWGVDYTL
                     TLDNYIKLFGQGFSDGGFPSLIQTVIFAAAAAPITALFGLLIAYVTVRRDFKGKKTLE
                     FLTLLCFAVPGTVAGVSYILAFNDAPIYLTGTGMIIILSMVMRNMPVGMRAAIAGLGQ
                     LDKSLDEASLSLKAGSFKTMLFVVLPLLKPALLSALVTSFVRAMTTVSAIVFLVTADT
                     RVATSYILNRVEDGEYGIAIAYGSILIVVMMAIILIFDWIVGDTRIARSKAKKM"
     gene            19728..20777
                     /gene="fbpC"
                     /locus_tag="PXE26_000790"
     CDS             19728..20777
                     /gene="fbpC"
                     /locus_tag="PXE26_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric ABC transporter ATP-binding protein"
                     /protein_id="HDL5593396.1"
                     /translation="MNNDFLVLKNVTKSFGKVTVIDNLNLSIPQGKMVTLLGPSGCGK
                     TTVLRLVAGLENPTSGQIFIDGEDVTQSSIQHRDICIVFQSYALFPHMSIGDNVGYGL
                     KMQGVPKEERLQRVKEALELVDLGGFEDRFVDQISGGQQQRVALARALILKPKVLLFD
                     EPLSNLDANLRRSMREKIRELQQRLNITSLYVTHDQSEAFAVSDEVIVMNKGKIMQKA
                     PAKELYLRPNSLFLANFMGESSIFEGTIAGNQININGYQFTLANAEQFELPDGEYLVG
                     IRPEAIHLAEQGNISQLCKIKNAVYMGNHWEIIAEWEGKDLLVNTKPENFYPHIKQAY
                     VHFIEQGVFLLKKEL"
BASE COUNT         5883 a         4676 c         4151 g         6174 t
ORIGIN      
        1 ctctgccaaa ttttgcaaat tttagaagaa aacagaccgc ttgtcagggt tggaattaga
       61 gtaaccagct gccaatcaat gcacaggcaa aaccggttaa accgatggca gtttcaagca
      121 ttgtccacgt tttgagggta gttttttcgt ccatttcaag gaaacggctc atcagccaga
      181 aaccggagtc attgacgtgg gaaagcaccg tcgcaccgga ggcgatagca atcacgataa
      241 aacagaggtc gaactggctt aaatcagtcg ctgccgccac agttggcgca atcaacgctg
      301 ctgtggtggt taaagcaacg gttgccgagc cttgtgcgac acggaatacc gtagcaataa
      361 taaaggcggc aaccacaatc ggcattccgg tgtctttcat catttccgat aatacatcgc
      421 caatcccgct ggcacgcaac acgccaccaa acattccgcc tgcaccggtt actaagacaa
      481 tcgagcagat tgggccaagg gcattgttac agattttttc gatttggtcg aaactgcgat
      541 tatcccgcaa cagcataatc gccacaatta aggtaatcag taaagcaaca ggggttttgc
      601 cgattaagcg aaggctctgc acccacattt cactgccatc aatcacttta gcaacggaga
      661 gggtattcaa gccggtatca aacaaaatca ggataatcgg cagcaccaac accgtgagta
      721 ccttgccaaa acttggcggg ttttgtactg ccatttcgtt tgccgataag ccgtttaaaa
      781 acgctttcgg caaatcaacg tgaatgcgtt tgctgataaa ttggctgaac aggtaagtgc
      841 cgatatacca cgttgggatt gcacaaacca agcccaccaa gactaacagc cccatattca
      901 caccaagcag atcgccggag gcaaccgggc cggggtgcgg aggtagaaag gcgtgcatta
      961 ccgcaaacgc accggcagac ggaaacgcat agcgcaacac cgaaccgccg aactgttttg
     1021 ccacgctaaa aataatcggt aacatcacca ccaagccggc atcaaagaaa atcgggaagc
     1081 cgaataacag cgaggcaacg cccaacgcaa aaggcgcacg ttctttgccg aatttattga
     1141 taagcgtatc cgcaagcact ttcgccccgc cggtgatttc aagcaagcga ccaatcatcg
     1201 ccccaagccc caccagtaac gccactgatg ccagcgtact accaaaacca ttcaacaatg
     1261 ttggcaggat tttatctacc ggaataccgg cagctaatgc agtgagcagg ctcacaataa
     1321 tcaatgccac aaaagcgtgg actttaaatt tcataatcag caccagcaat aaaatgatgg
     1381 cagcaaacat aatgaacagt aacataggat ctcctaaggt tgaattgtta tcggtaacat
     1441 aaccaaaaag cagtttagag taaacggttg cagggctttt attttaaaaa tgtgatctac
     1501 ttcaagtttt ctggaaatag cagatgattt ttcagcataa cctgttacat taacggctaa
     1561 gttaacgtta ccagtaacac aaggaaattc aatggcaaac ggcaaagcat ttattttgat
     1621 gggcgtgtcc agcaccggca aaaccagcgt gggaacggca gtcgcacagc ggttgggaat
     1681 aaaattgatt gatggggacg acttacaccc tcgtgccaat atactgaaaa tggcaagtgg
     1741 cacgccactc aatgatgcag atcgcacacc gtggttggag cggattaacg atgcagtgtt
     1801 cagttttgaa caaaaaagcg aaaaagggat tatcgtctgc tcagcattga agaaaaagta
     1861 ccgagaccag atccgacaag gcaatgccga tgtgactttt ctattcttgc acggctcgtt
     1921 tgaactggtg ctggctcgaa tgcaacaacg caaagggcat tttatgaaac cggaaatgct
     1981 tcaaagccaa tttaatacgc tggaaattcc gcaggcagac gaaccagatg tgatatttat
     2041 tgatattgac ggcagttttg acgaggtggt ggagcgttgc gtgaaagcag ttgagccgtt
     2101 gctttaatca caagtggtgg attttgcgga tttttttgca aattcaaccg cttgtccggg
     2161 ctacacactt tcccccaaat ggatctgata gcccaagtta attatggagc tttgttgtgg
     2221 tacgccgtga atacggttga gcagctcttg ggcggcaact ctgcctattt caaggcgagg
     2281 tgtgatgacg ctggcaagct gtggcgtgag ggattgcccg acatcgtgtc cgtgaaagcc
     2341 ggcgatttta atctgctgcg gcacatgaat gcctaaccgt tggcactcaa ataatgcccc
     2401 gattgccaaa tcgtcattgg tgcaaaaaat gccgtctagc tgcggaatgt gttgcagggc
     2461 ttgttttagc tggcttgcgc caagcgtgaa agaagaatgc tctgcagtag taatgctgtg
     2521 tgggcttaag ccgtgtttga gcattgcctg ttcgtagccc tgcattttca gctgagagcg
     2581 tttatccatt ctcgccccga aatacaccac ctgtcggcag cctcgatgaa tcattgtctc
     2641 gaccattgct tgagccgcag aaatattgtc aaatccgacc gcttgttgaa tgccacattc
     2701 gccgctttcc attatctcaa tcaccggaat attcgccact tccagcattt tcaaggtgcg
     2761 gggcgagtgg tgattttccg ataagataat gccgtcaata ttgtacgaaa gcagcgactc
     2821 aatccgctgc tcttcctttt gttcgctgta accatagtgg gcgagcatgg tttgatagct
     2881 ggcttggtcg gtaatctgct caatgccttt aatcacatcg gcaaacactt gattggtaag
     2941 cgaaggaacc agcacgccaa ttgcacggct tttggcattc gagagaatat ccggtgcacg
     3001 gtttgggata tagccaaaca gctcaatcgc ttgtgcaatc cgctcgccgg tctccttggc
     3061 aacggtgttt ggatcccgca aaaagcgact gaccgtcatt ttggtaatgc cgagatgggt
     3121 agcgatgtct tgcaaagttg ggcgtttcgg ttttctcatt ggaatagata acgaaaaaat
     3181 ttaatttcgc tgattataac tgaagataag gcaataattg caaaatattc ggtgaaattg
     3241 accgcttgtt actactcttg cctgaactct ttcggggttt taccaaactc ttttttaaac
     3301 acggcataga aatattgtaa agagggataa ccgcacacat tggcaatttc ttgggtcgaa
     3361 atctcggtaa atttgagcat atatgttgct cttgctaatt tttcctcgtg aatcacctgg
     3421 tgaattgtct tattcatttc ctgcttaaaa cgctgttcaa ggttagagcg ggaaatttta
     3481 agatgatcca gtacttgctc tactttaatg ccttggcaag ctcggtgacg aataaagtgc
     3541 atagcttgga ttaccattgg gtcttgcaaa gaacgataat cggtcgaacg gcgttcttcc
     3601 acttttaccg gcgggattaa aatcggcttg gttgaaaccg gtagattatt taattttcga
     3661 tataataact tcgcagcgtg atagccgatt tgtgatgttc cttgtgtgac tgaagaaaga
     3721 gaaacccgag agaggtattg aatcaactct tcgttatcaa tgccgatcac gcaaagttgt
     3781 tcaggtacag cgatttttaa atgctcacag gtttgaagca ggtgtcttgc ccttgcgtca
     3841 gtaacggcaa taatgcccgt gtgggctggt aaggtttgta accactcgcc taatttggct
     3901 tgtaattcaa cccaattatc tgaatgaaat tgatcaccaa tataacaatt tgggtgatgt
     3961 tcatattttt ccatcaactg aataaaggca ttttttcgct ctatcgccca atgtttttcc
     4021 gtttctgcag gatagccgta aaacgcaaat tggttgattc ctttttgttt taggtgtaaa
     4081 aatgctgcct caactaaggc gtaattgtcg gtagcaacat aaggaaggtc agggtaatag
     4141 tcagggtttt ggtaagaacc gcctactgct acaatgggga cgtcaatatc tttaagtagc
     4201 tcaactgttt ccaaatcgtc aaaatcggca ataatgccgt caatcgacag gctttcgata
     4261 ctatttttat gatagacaaa atcatcttcc acaaaaatat cccaagtaca ttgtgatgct
     4321 tgaataaact gcccaatgcc ctgcattact cctctgtcat aaattttgtt agcattaaaa
     4381 agtaaggcaa ttttataaga ttgttctatc attacttcct ccagtaccca ctttcaaaag
     4441 taactataaa ataaaattat tttttgatca aaacgaataa aagaataaaa ccccggtatt
     4501 tctaccaggg ttttaagctc aattttgatt aagattattc cgcagctgct tcagttgcaa
     4561 cttctgggcg atccactaac tcaatgtaag ccattggagc attatcacct gcacggaaac
     4621 cacattttaa aatgcgagtg taaccacccg cacgttgtgc aaaacgtgga cctaattcat
     4681 tgaataattt agcaactgta tcaacgttgc gtgtacgggc aaaagctaaa cggcgatttg
     4741 caacgctgtc tgctttagct aaagtaatta acggctcaac tacacggcgt aactctttcg
     4801 cttttggtaa agttgtcttg atgatttcgt gttcaacaag cgcacttgcc atattacgga
     4861 acatcgcttg gcgatggctg ctgttacggt ttaattgacg tccactctta cgatggcgca
     4921 taacctattc cttcttagaa aatctatacc gaaaaactag tcttctgcaa tacttgcagg
     4981 tggccagttt tcaaggcgca taccgagtga taaaccacga gaagcaagaa catccttaat
     5041 ctctgtaaga gattttttac ccaagttcgg ggttttaaga agttcaactt ctgtacgttg
     5101 tactaaatca ccgatatagt gaattgtctc tgctttcaaa cagttagcag aacgaactgt
     5161 cagctctagg tcatctactg gacgaagaag aataggatca aattccggtt tttcttcttt
     5221 cacttcaggt tgacgaacat cacgcaaatc aacgaatgca gcaagttgtt ctgctaaaat
     5281 cgttgcagca cgacggatag cttcttcagg atctaacgtt ccgttagttt ccatctcaat
     5341 aacaagttta tctaagtctg tacgttgttc aacacgagca gcttcgacat tgtaagcaat
     5401 gcgatctaca ggtgaaaaac gtgcatctac taataaacga ccgatagggc ggtcatcgtt
     5461 ttgagtatga agacgtgctg atgcaggaac ataacctcga ccacgttgaa cacgaatgcg
     5521 catattaatt gatgcattct tatctgttaa atgacagatt acgtgatcag gattcacaat
     5581 ttctacatcg ccatcgtgtg tgatgtcggc tgcagttaca gggccaattc cagatttatt
     5641 tagtgtcaaa ataatatcat ctttattttg cacttttacc gctagacctt taaggtttaa
     5701 taatacctca agaatatctt cctgaacgcc ttctttgctg ctgtactcat gcagtacacc
     5761 atcaatttca acttcagtaa ctgcacaacc cggcatagat gaaagtaaaa tgcggcgaag
     5821 tgcgttacct aatgtatggc caaaaccacg ctctaacggc tctaatgtca ctttagcatg
     5881 agttgaacta acttgttcaa tatttactaa gtgcggcttt aaaaattctg tcacagaacc
     5941 ctgcattttt tcctctcttt gcggttaagc taactattat ttagagtaaa gctcaacgat
     6001 cagatgttca ttaatatctg ctgatagatc agaacgctct ggacgacgtt taaatacgcc
     6061 ttccatttta gttgcatcaa cttctaacca agttggtttt tcacgttgag ttgctaattc
     6121 taatgatgct ttaatacgtg cttgtttttt cgatttttca cgaacagcaa caacatcatc
     6181 aacagaaact tggaatgaag gaatgtttac tacacgaccg tttactacga ttgatttatg
     6241 gctaacaagc tgacgtgctt ctgcacgtgt tgctgcaaaa cccatacgat aaactacgtt
     6301 atctaaacga ccttccaata atactagtaa gttttcaccg gtattacctt ttaagcggtt
     6361 cgcttctgta taataattac ggaattgacg ctctaagata ccataaatac ggcgaacttt
     6421 ttgtttttca cgtaattgac taccatagtc agataaacgt ggcttgcgag caccatgttg
     6481 accaggcgct acatcaagtc tatttctaca ttttgattca atcgcacgaa cgcctgattt
     6541 taagaataaa tcagtacctt cacgacggct tagcttgagc ttaggaccca aatatcttgc
     6601 cattttcttt ctccaattct tttaacgtca attaaacacg acgttttttc ggtggacgac
     6661 aaccgttatg tggaatcgga gtcacatcag taatattcgt gatacggaaa cctgctgcat
     6721 ttaatgcacg gattgttgac tcacgacctg gacccggtcc tttaaccata acttccaaat
     6781 tctttaaacc aaactcttta accatttctg cacaacgctc tgcagcaact tgagcagcga
     6841 atggagtcga tttacgagaa ccacggaaac ctgaaccacc tgcagttgcc caagctagag
     6901 cattaccttg acggtcagta atagtaacga ttgtgttatt gaaagatgcg tggatatgag
     6961 ctacgccatc tgcaatctgt ttttttacgc gcttacgtgc gcgaactggt gttttagcca
     7021 ttatttatct actccgacta ttttttgatc ggtttgcgtg gacctttacg ggtacgcgca
     7081 ttagtcttag tacgttgacc acgtaccggt aaactacgac gatgacgtaa accacggtag
     7141 caacctaagt ctaaaagacg tttgatgctt aaagttactt cacgacgtaa atccccttcg
     7201 acagtaaatt taccaacttc ttcacgcagt ttttcaatct gctcttcaga caattctctg
     7261 atctttacat cttcagcaat acccgttgca gcacagatgg cttttgcacg agttttaccg
     7321 ataccgtaaa ttgcagttaa tgcgattaca gtgtgttttt gatcaggaat gttaatgcct
     7381 gcaatacggg ccactatgca ctcctattat ttaagtttat tgatatactg atcttgaaaa
     7441 gcccgtttca ggatactcaa acagtatatc aggacgaatg agctgagcag tataactgct
     7501 cagcgggttc tttgcaagaa atatgcgtaa attaaccttg acgttgtttg tgtttaggat
     7561 cgctacaaat tacacgaacc acaccttcac gtttgattac tttacaatta cggcacattc
     7621 tttttactga agcacgaact ttcattgctt atcctttatt aacggcctat taatttagac
     7681 cttttaagtt agctttcttc aacacagaat catattgttg agacattaaa tgactctgaa
     7741 cctgtgcgat gaaatccata ataacaacca ctacaatcaa taatgatgta ccacctaatt
     7801 ggaatggcac cttccataac gacgtaatga tgtaaggaac caaacaaaca aaagcaatat
     7861 ataacgcacc aattaaggtt aaacgtgtca ttactttatc gatataacga gatgtttgtt
     7921 cgcctggtcg gtaacctggt acaaacgcac ctgatttctt aagattatcc gctgtatcac
     7981 gaggattata ctgcattcct gtataaaaga aagcaaagaa aatcactgcc attgtgaata
     8041 atacaacata cagtggttga cctggctgta atagttgtga aaggttaaat aaccactcaa
     8101 atccttcgct ttgaccaaac cattgagtaa tgcttgccgg gaataaaata atacttgaag
     8161 caaaaattgc cggtattacc cctgccatat tcacttttaa tggtaagtga gaagttcttg
     8221 caggcgccat cattcgacct tgttggcgac ttgcatagtt tacaactatt cttctttgtc
     8281 cacgttcaac aaaaacaaca aaataagtta ctgcaaatgc aattattgca actagtagta
     8341 agacgataaa tgataactcg ccttgacggg cttgttctat tgtctgccct atcgttgctg
     8401 gaagatctgc aacaatacct gtaaaaataa tcaatgagat accgtttccg ataccacgct
     8461 cagtgatttg ttcgcctagc cacattagga acattgttcc tgtcactaag cttactacag
     8521 aggttacata gaataatata cttggattag gaactaatcc atgtaccata ttcggtaggg
     8581 ctagtgaaat accaatagat tgaataaatg ctaataacag tgtgccatag cgtgtatatt
     8641 tactgatttt ccgacgacct gcttcacctt ctttctttaa ttcagctaga ggtgggtgaa
     8701 tcgctgtcaa taattggata ataattgacg ctgaaatata aggcataata cctagtgcaa
     8761 atatagatgc acggcttaaa gcaccaccag agaacatatt aaacatatca atgatggtgc
     8821 cttgctgttg tcgaattaat tcggataata cagaagcatc aatgccagga acaggtataa
     8881 aagaaccgat acggaaaacg attaacgcac ctaaaacaaa caatagtctt gatttaagct
     8941 cgccagtccc tttttgtgta ctaccttggt accctggttg ctttgccatc tttattcctc
     9001 gatagaaccg ccagcagctt caatagcagc tttagcgcct ttagttacac gtaagccttt
     9061 aacaactact gctctttcaa ttttgcctgc taaaattact ttagcagata aaatatcttt
     9121 agtaatgatg tttgctgctt ttaatgtctc taaagttact tcgttgccat ctactttagc
     9181 taagtcgttt aaacgaattt cagccacatg gaatgatttt aatgaagtaa aaccaaattt
     9241 tggcaaacga cgatataaag gcatttgacc accctcgaaa ccacgacgaa caccgccgcc
     9301 tgtacgagat ttttgacctt tatgaccgcg cccaccagtt ttacctaaac cagaaccaat
     9361 accacgacct agacgttttg cactgtgctt agcaccttca gctggagaaa gagaatttaa
     9421 acgcattcta ttactcctct actttaacca tataagacac ttgattgatc ataccacgca
     9481 ctgctggtgt atcttcaagt tctacagtat gacgaatatg acgaagacct aagcctttta
     9541 acgttgcttt atgtttcggt aaacgagcga tagagctacg agtttgagtt actttaattt
     9601 ttgccatatc caattacccc aaaatttctt caactgtttt gccacgtttt gcagcaacca
     9661 tttcaggtga tttcatgttc tcaagtgcat cgattgttgc acgaacaacg ttaattgggt
     9721 tagttgaacc atacgcttta gaaagaacgt tacgaacacc cgcaacttct aatactgcac
     9781 gcattgcacc accagcgatg atacctgtac cttcacttgc tggttgcata aatacgcgtg
     9841 aacctgtatg tgaaccttta actggatgtt gtaatgtacc ttcatttaaa gctacattaa
     9901 tcatattgcg acgagctttt tccatcgctt tttggattgc tgctggaact tcacgtgctt
     9961 taccgtgacc aaaacctaca cgaccgttac catcgcccac tactgttaaa gcagtgaaac
    10021 tcataatacg accacctttt acggtttttg aaacacggtt aaccgcgatt agcttttcct
    10081 gcagttcacc agcttgtttt tcgatgtttg acatctcaaa ttcctctatt agaactgtag
    10141 accagcttca cgagcagcat ctgctaatga ttgcacacga ccgtggtatt taaaaccaga
    10201 acggtcaaaa gcaaccgctt taataccttt ggcaattgca cgctcagcaa cgattttacc
    10261 cactactgct gcggcttctt tattgccggt atatttaact tgctctttaa ttactttttc
    10321 aacagttgaa gctgctgcta gtacttctga gccattaggt gcaatcacct gcgcatagat
    10381 atggcgaggt gtgcgatgca caactaaacg tgttgcacct tgctctctca ttaaatgacg
    10441 tgcacggctt gcacgacgga tacgagctac tttcttatcc atagtgttac cttactttac
    10501 tttttcttcg cttcttttgt acgcactact tcatcagagt aacgtacacc tttaccttta
    10561 taaggttcag gtttgcgata tgcacgaata tctgctgcca cttgaccaat taactgtttg
    10621 tcagcacttt tcagaataat ttctgtttgt gatggacatt caccagttac gcctgctggc
    10681 aacgtgtgtt ctactgggtg agagaaacct aaacttaaag caacagcatt gcctttcatt
    10741 tgtgctctat aaccaacacc cactaattgc aatttcttag taaagccttc agtaaccccg
    10801 attaccatat tatttactag tgcacgagca gtacctgctt gagcatctgc attagcgata
    10861 ccttcacgtg gagcgaaagt taatgcatct gcttcttgtt ttacttcaac tgcattgtga
    10921 atttcacgag ataactcgcc gtttttacct ttaactgtta atagctgacc gttaagtttt
    10981 acctcaacac cggcaggaat attaacaggt gcttttgcaa cacgagacat ttttcctacc
    11041 tctctattat gctacgtaac agataatttc accgccgagg cccgcttgac gcgcagcacg
    11101 gtcggtcatt acacctttag atgtagaaac aactgcgata cctaaaccac ccattacttt
    11161 tggtaattcg tctttgcgtt tataaatacg cagacccgga cggctcacac gttggatact
    11221 ttctacaacc ggtttgtttt ggaaatattt taaagtaatt tccagttcag gtttaacacc
    11281 ttcaacaact ttaacgcttt cgatataacc ttcttcagct aaaacatttg caatagcaac
    11341 ttttaactta gatgaaggca tactgattgc aactttgttc gcagcttgac cgttacgaat
    11401 acgggtcagc atatctgcga ttggatcttg catgctcatg tatttactcc catgattcca
    11461 aattaaaaga ggttattacc agcttgcctt cttaagaccc ggaatttcac cgcgcatagc
    11521 agcttcacga accttaatac ggcttaaacc aaacttacga agtacgccat gtggacgacc
    11581 agtttggcgg caacgattac gctgacggat tgggctagaa tcacgaggaa gtgtttgtaa
    11641 ttttaacact gctgcccaac ggtcttcatc agatgcattc acatcagaga tgattttctt
    11701 taattcttca cgttttgcgt agaatttatc agctaattta gcacgtttta catcgcgtgc
    11761 gatcattgat tgttttgcca cgataaccta ccttatttac ggaatgggaa attgaaagca
    11821 gctaataaag cttgaccttc ttcatcagtt ttcgctgagg tggtgatagt aatatctaaa
    11881 ccacgaacac gatctacttt atcgtagtcg atttcaggga aaatgatttg ttcacgaaca
    11941 cccatactgt aattaccacg accatcgaat gacttagcgt ttaaaccgcg gaagtcacga
    12001 atacgtggaa cagcgatagt aatcaatctt tcaaagaatt cccacatacg ttcaccacgt
    12061 agggttactt tgcaaccgat tggataccct tgacggattt taaagcctgc aacagatttg
    12121 cgagctttag ttactaaagg tttttgaccg ctgattgctg ctaaatccgc tactgcgtta
    12181 tctaacagtt ttttgtcggt caatgcttca cccacaccca tgttaagggt aatcttttcg
    12241 attcgtggga cttgcatgac agatgagtag ttgaattttg cttttaattc attaactact
    12301 gtatctctgt agtaatcatg cagtttcgcc atcacattac tccagttaat taaattgttt
    12361 tctcgttaga tttgaagaaa cgcacttttt tgccatcttc gaatctaaat cctacacggt
    12421 cagctttgtt ggtttcaggg ttgaagatcg caacgtttga aacatcgatt gcagcttctt
    12481 tcttcactaa accaccagct ttgcctaatg caggaactgg tttttcgtgt ttagtgatga
    12541 tgttgatacc ctcaacaaaa actttaccat ttggtaacac tttagttacc ttaccacgtt
    12601 tgcccttatc tttaccggta agaacaatta cttcatcgtt ttgacggatt tttgcagcca
    12661 ttacattctc cttatagtac ttctggagct aaagagatga ttttcataaa cttctcagaa
    12721 cgaagttcac gagtcaccgg tccaaaaata cgagtaccga ttggttgctc agtgttattg
    12781 tttaaaatta cacaagcatt gccatcgaaa cgaataactg cgccatctgg gcgacgaaca
    12841 cccttcttgg tgcgcacaac aactgctttt aacacatcac cttttttcac tttaccgcgt
    12901 ggaattgctt cttttacagt aactttaatg atatcgccaa tagcagcgta acgacggtgc
    12961 gatccaccta gaaccttgat acacattacg ctacgagccc ctgagttatc agcaacatcc
    13021 agcatagtct gttcttggat catattagtg ctccgttaaa ataaaaaaac accctttcgg
    13081 gacgaaccta tttatacaaa tataaatagg gtgcaaaata tactacaaaa accactagtt
    13141 aatcaagtga atttttaagc taatttaata gtttaagtaa gcttatttat aaattgtttc
    13201 aactatcaat aaactgtcct ataactcata taaaaacccc aagatatctt ggggtttaac
    13261 taacattact ctacagtcac cgcttttgca aggttacgag gttggtcaac gtccgttcct
    13321 ttgattaagg caatgtgata tgaaagtagt tgtaacggca cggtgtagaa aatcggtgcg
    13381 gttacttcat caactttcgg cattacaatc gttttgaagc cttctgcttc ttcaaaacct
    13441 gcatcgtgat cggcaaacac atataactga ccgcctcttg cacgcacttc ttcaatattg
    13501 gatttcactt tctcaagcaa gtcattttcc ggtgctacca ccactaccgg catatcgcta
    13561 tcaattaatg ctaacgggcc gtgttttaac tcgcctgcgg cataagcttc tgcgtgaata
    13621 tatgaaatct cttttaattt caatgcagat tccatcgcaa ccgggtaata ttctccacga
    13681 cctaagaaca atgtgtggtg tttatccgca aaatcttccg ataatttttc gatttgttta
    13741 tcgaacacta acgcactttc aatttgtgct ggtaagcgtt gtaaagattg cacgatatgg
    13801 tgttcttgct cttcactcat tctgccttgt aagcgtccaa tcgccacatt taataacaat
    13861 aagcaagtta attgagtagt gaatgctttg gttgatgcta caccaatttc aacaccagct
    13921 ttggttaaga atgcaaaatc ggattcacgc actaatgaag aacttgccac attacacacc
    13981 gtcattgccg ccatatagcc agattctttc gctaaacgca gtgcagctaa cgtatctgcg
    14041 gtttcacctg attgtgaaag cgtgattaat aagctgttcg ggcgagtaac gaatttacgg
    14101 taacggaatt cggaggcaat ttccacatca cagctcacgc ctgcaatgga ttcaaaccaa
    14161 taacgtgaaa ccataccagc attgtaagag gttccacaag ccacaatttg cacgtgttct
    14221 actttcgata aaatctctgc cgcattcggt gcaatggctg aaatatctac tttaccgtct
    14281 ttgatacgac catctaaggt attcataatc gcaaccggct gctcaaaaat ctctttttgc
    14341 atatagtgac gatattgtcc tttatctgcc gcgtctgcct caaaattgcc ttcgtgaatt
    14401 tcacgctctg ccttgttgcc ttcacggtca taaatatcca ctgtgcgacg ggtaatttcg
    14461 gctacatcac cttcttctag ataagcaaaa cggcgagtta cgcttaataa tgcaagtggg
    14521 tctgaagcaa ggaagttctc gcctacaccg taaccaatca ctaacgggct acctgagcga
    14581 gccacaatta aatgctccgg ctcttcttca tttaatacca ctgtgccgta agcaccacgc
    14641 agttgcacca cggttttttg taccgcttcc aataatgaag aagcagaacg caattcccat
    14701 tcaactaaat gagcaatgac ttcggtatcg gtttgagatt ggaacacata accacgctct
    14761 tgtaacacta tttttaactc ttcgtagttt tcgataatcc cgttatgaac tactgcaatt
    14821 ttgccactgc ggtgtgggtg agcattagtt tctgacggct cgccgtgcgt tgcccagcga
    14881 gtgtgtgcga tcccagtgcc gcctaatagt ggcttagtgt ctaacgcctc atctaaggct
    14941 ttgactttac cgacacggcg tacaatttgc attgttttat catctgcatt taatactgct
    15001 acaccagcag agtcatatcc acggtattct aagcgatgta aaccatcaac caagatttct
    15061 gcgatatcac gttgtgctac tgcacctaca attccacaca taaatttgct ttcctatgtt
    15121 taagtttaaa aattcatttg agctactgct attttgcaat aaccacttcg acacccattt
    15181 tttcgatttg ttctttcgtt tcaaaactta attgactgtc ggtaataatt ttggtaatat
    15241 tttgccattt caattcaata ttcggcattt tccgaccgat tttttgcgat tcaattaaca
    15301 caatcacttc acggctcact tctgccatca cctgacttaa gccaactaat tcattaaagg
    15361 tagtcgtgcc tcgagccaaa tctaaaccgt ccgcaccaat aaaaagctga tcgaaatcat
    15421 atgaacgcaa tacctgttct gctactttgc cttgaaagga ctcagaacgg ctatcccaag
    15481 tgccgccggt catcaacact gttggttcgc attcgaggga agtcaattcc gtcgctaaat
    15541 tcagcgaatt tgtcatcacc accaagccgg tttggttcaa tgcttttacc aaagctccgg
    15601 tcgtgctgcc gctgtcaata atgatgcgat tatgatcacg aatacaatca cgtgcggctt
    15661 gagcaatcat tttcttttga atcgaaagtt gctcaataaa cgcttcttcc atcatttccg
    15721 atggaatttt taccgcccca ccatacttac gcaataaaaa accactttct tccaaagcgg
    15781 ttaaatcttt tctaatcgta acttcagacg tctcaaagaa atgagcgagt tcatctacac
    15841 tcacttcatt tttctcttgt accatttgaa caattaaatg gcggcgttgt tgcgtgttac
    15901 gttttgacat tataatcttc acttaaattt cgtttcaaaa cttttgcatt ataaagaaag
    15961 ctcgcgaaaa gaaaagcaga aaatgcaaaa tttacaaaat ctatacaaaa taaaaccgct
    16021 tgtaatattg atttacaagc ggttgatttc ttgaaatttt ttgcaattat ttgatttggc
    16081 taccaatcac gccaccaagt gcggcaccac ctaaagttgc accggtagat tcaccaatcg
    16141 cgtgaccagc cacaccgcca attgctgcac cgattgcagt attacgttgc gtttttgtca
    16201 tattgttaca gccagacaca gcaaccatta ataccattgc accaacaact ttcaaaatag
    16261 atttcataat aatccctcat aattaatcaa tttcaaataa gccaatattc ttggctatgc
    16321 tataagattt aatttattta gaaaggttca actactacca cctatgaatt gcaaattttt
    16381 tcacaattta ggccgcttgt tgattgaact gtgagcttgc tcacagaatt ttatggtatt
    16441 tcttgctata ttgtatagca atctatgcga taactcatta aggaaataaa aatgaaatta
    16501 aaaaaattat ctttagcact ctcgacttta ttactcggtt cagcctttgc caactctgct
    16561 ttagcggaag gtcgtttaac cgtttattgt agtgccacta atgaactttg tgagcaagaa
    16621 gtgcaagcat tcggcaaaaa atataatgtt aaagtagcat ttgtgcgtaa tggttcaggc
    16681 agtacattgg cgaaaattga agcggagaaa aacaatcctc aagctgatgt atggtatggc
    16741 ggtactttag atccacattc acaagctgca gaaatgggtt tactcgagcc gtataaatca
    16801 ccgaatctcg aacaaattat cgaaaaattc cgtgatccgg caaaattaaa aggcaactac
    16861 tcttcggctg tgtatatggg gattttaggt tatggtgtga atttagaccg aatcaaaaaa
    16921 ctcggcattg aaaaagtgcc tagcacttgg gaagacttgc tcgacccacg cctagccggt
    16981 gaaatccaaa ttgccgaccc acaaagctcc ggcacggctt atactgcgat tgcgaccttc
    17041 gtacaacttt taggagaaga aaaagccttc gactatttcc gcaaattaca caaaaacatt
    17101 tcacaatata ccaaatccgg catcacaccg gcacgcaata ccgcccgtgg tgaaaccgct
    17161 atcggtatcg gtttcttaca cgactatgcg attgagaaga aaaacggggc taacattgaa
    17221 atgaccgcac caacagacgg cacaggctac gaattaggtg gtgtgagtat cctcaaaggt
    17281 gcaagaaatc ttgataatgc aaaactgttc gtggattggt cgctttctaa agaagctcaa
    17341 gaactctctt ggcaaaaagg caatgcgttc caagtattaa ccaacaccac cgcagaatct
    17401 tccccttatg ctctagatcc gaaaaactta aacttaatca actatgattt cgagaaatac
    17461 ggctcgagcg aagagcgtaa acgcttgatt gataagtggg taaatgaagt aaaattagcg
    17521 aaatagtgtt aatctttcca ctgaggggat aagcaattat cccctctcta attataagaa
    17581 tctgtgaggt gttatgcaga atttttcctt ttcccgaccg cttgtttggg tgcttatcgg
    17641 gttactcggt tttctcttgt taccgtctaa agccttagat tatgggctgt ttgactcaac
    17701 ctctgatgaa ctgctcgccg caatgggctg ggcgagtctg aacatcactt gggcgtggtt
    17761 tttaccgctt ttggtatttt tattgccaaa ttcgaccgct tgtaaaacta gagccaagct
    17821 ggaattagta gggctgggcg tgctgttcgc ctttattttc ctgtcagcga ttgtgctgaa
    17881 aatcagcctc ggttatgcgg tgttgccgtt gattattgcc attatggggc ttgcgacccc
    17941 aaatttagca acgctcaaag taatgcaggg tgaccgcttt attatcggct cgttactgag
    18001 cattattctg ctgattttct tttttattgt gtatccgacc atcgccattt ttgtgtcgat
    18061 gttctacaac ggctcggaat ttgtgccaag ccaagtgctg acaattttgc aacaacctta
    18121 tgtcgttcga gtcatcggta actcgctctc ggttgccggc acggtgggcg ttctctccac
    18181 cctattcggc ttagcctttg ctctctacac cactcggatt gctaaacgct cggcgtttat
    18241 cgggcggatt ttctcgattt tacctatcgt caccccgccg tttgtggtcg gtttaggcgt
    18301 aaccctgatg cttgggcgtt ccggctatgt tactgaattt ttagtggatt actttggctt
    18361 tgccaacaat tggctgtacg gtttcaccgg tattgtgata gcccataccc tcgcgctcac
    18421 gccaatgtcg tttatgattt tggaaggggc attgaaatcc attcacccat cggtggaaga
    18481 agcagcttac accctgcgtt ccaaccgcta tcaagccttt tttaacatta ttttcccatt
    18541 gttaaaaccg gcattggcaa actccttttt agtggtggca attcaatccc tcgccgattt
    18601 cagtacgccg ttagtattgg gcggtagctt tgatgtgatt gcaacccaaa tctacttcta
    18661 cattgccggt tctcaactgg attatgcctc tgctagcacg cttggggcaa ttttgttggt
    18721 gttctcctta gccattttcg tgatccaata cctctggatc ggcaatcgct cttatgtgac
    18781 ggtgtccggc aaatcctatc ggggtgatgt ccaagactta ccaagcggta tgaaatggct
    18841 gattatttgc accttattgt tctggggaac cttcaactta gtgctgtacg gcagtatttt
    18901 ctacggcagt ttcaccgtga actggggtgt ggattatacc ttaacccttg ataactacat
    18961 caagctattc gggcaagggt ttagcgatgg cggtttccct tcgttaattc aaaccgtgat
    19021 tttcgctgcc gctgccgccc cgattactgc actattcggc ttgctgatcg cctatgtgac
    19081 agttcggcgt gatttcaaag gcaagaaaac cctggaattt ttaaccctgc tctgctttgc
    19141 cgtaccggga acggtggcag gtgtttctta cattctcgcc tttaacgatg ccccgattta
    19201 cctaaccggc accggtatga tcatcattct ctcaatggta atgcggaata tgcctgtggg
    19261 tatgcgagcg gcaattgccg gcttagggca gttggataaa tcgctggacg aagcctcgct
    19321 ctcgctgaaa gccggttcgt tcaaaacgat gctgtttgtg gtgttaccgc tactcaaacc
    19381 ggcactgctc tccgccctcg tcaccagctt tgtgcgggca atgacgactg tcagtgcgat
    19441 tgtattctta gtcaccgccg acactcgtgt ggcaacctcc tacattctca accgtgtgga
    19501 agacggtgaa tacggcattg cgattgccta cggctcaatt ttaattgtgg tgatgatggc
    19561 gattatcctg atttttgact ggattgtcgg cgacacccgt atcgcccgtt ctaaggcgaa
    19621 aaaaatgtaa aaagacatct actctctccc tttatgggag agagacagaa aaatacttcg
    19681 ttcagaagta tttttcagag agagggatat aattaaaagg acaatatatg aacaacgatt
    19741 tcttagtatt aaaaaacgtc accaaatctt tcggcaaggt gacggtcatt gataatctca
    19801 acctcagtat tccgcaaggt aaaatggtga cattactcgg gccgtccggc tgtggtaaaa
    19861 ccaccgtact gcgtttagtg gcagggctgg aaaacccgac ttcggggcaa atttttattg
    19921 atggcgaaga tgttacccaa agttcgatcc aacaccgtga tatttgcatt gtgttccaat
    19981 cttatgcgtt atttccgcat atgtcgattg gcgataatgt cggctacggc ttgaaaatgc
    20041 agggcgtacc gaaagaagaa cggctgcaac gagtgaaaga ggcgttggaa ttggtggatt
    20101 taggcggctt tgaagatcgc tttgtcgatc aaatctctgg cggacaacaa caacgtgtcg
    20161 ccctcgcccg tgccttaatt ctgaaaccga aagtgctact gttcgatgaa ccgctgagta
    20221 accttgacgc taacttacgc cgttcaatgc gggagaaaat ccgtgaatta cagcaacgtt
    20281 taaacattac ttccctttat gtgactcacg atcagtccga agcctttgcg gtttcagatg
    20341 aagtaattgt gatgaacaag ggaaaaatta tgcaaaaagc tccagccaaa gagttatacc
    20401 ttcgccctaa ttctttattc ttagcaaatt ttatgggtga aagcagcatt tttgaaggca
    20461 cgatagctgg caaccaaatt aatataaatg gatatcaatt tacgttagca aatgctgaac
    20521 aatttgagtt acccgatggg gaatacttag ttggcattcg tccagaagct attcatttag
    20581 ctgaacaagg aaatataagt caactctgta aaattaaaaa tgcagtttat atgggaaatc
    20641 attgggaaat tatagctgaa tgggaaggga aagatttatt agtcaatact aaacctgaaa
    20701 atttttaccc tcatatcaaa caggcctatg tacattttat cgaacaaggt gtttttcttt
    20761 taaagaaaga gctataacga atttatacta aattaagagg aaggtagtta taactattta
    20821 gcaattttga gaaaaatagg ccgcatgcaa aatctcttga tgacaagcgg tcttttctcg
    20881 ccga
//
LOCUS       DANLZD010000028        20350 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.028, whole genome shotgun sequence.
ACCESSION   DANLZD010000028 DANLZD010000000
VERSION     DANLZD010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20350
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.028"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            31..714
                     /locus_tag="PXE26_000791"
     CDS             31..714
                     /locus_tag="PXE26_000791"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HDL5593397.1"
                     /translation="MQLVFIRHGFSEWNAKNLFTGWRDVNLTERGIEEAKSAGQKLKA
                     AGFEFDIAFTSVLTRAIKTCNIVLEESDQLWIPQVKNWRLNERHYGALQGLDKKETAE
                     KYGDEQVHIWRRSYDISPPDLDPQDPNSAHNDRRYANLPKDLIPNAENLKITLERVLP
                     FWEDHIAPALISGKRVLVTAHGNSLRALAKHIEGISDADIMDLEIPTGQPLVYELDDN
                     LKVISKRYL"
     gene            complement(851..1408)
                     /gene="frr"
                     /locus_tag="PXE26_000792"
     CDS             complement(851..1408)
                     /gene="frr"
                     /locus_tag="PXE26_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HDL5593398.1"
                     /translation="MINEIKKDTQDRMEKSLEALKGHIAKIRTGRAQPSLLDGIQVEY
                     YGSATPLRQVANVVAEDARTLAVNVFDKSLISAVEKAILTSDLGLNPSSAGTTIRVPL
                     PPLTEERRRDLIKIVKAEGEQGKVAIRNVRRDANDQIKALLKDKEISENEQHKAEEDI
                     QKITDTFIKKVDEVLAAKEKELLDF"
     gene            complement(1460..2176)
                     /gene="pyrH"
                     /locus_tag="PXE26_000793"
     CDS             complement(1460..2176)
                     /gene="pyrH"
                     /locus_tag="PXE26_000793"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HDL5593399.1"
                     /translation="MSKPIYKRILLKLSGEALQGSEGFGIDPSILDRMALEIKELLAE
                     GVEVGVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAEVNAKLM
                     SAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGSPFFTTDSAACLRGIEIEADVVLK
                     ATKVDGVYDKDPAKYADAKLYNKLTYAQVIEQELQVMDLAAFTLARDHGMPIRVFNMG
                     KPGALRNVVFGTEEGTTISE"
     gene            2268..3830
                     /locus_tag="PXE26_000794"
     CDS             2268..3830
                     /locus_tag="PXE26_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HDL5593400.1"
                     /translation="MKSKQLFGILVAISLATAASCLMLIGSGFFPNPSIFEVILGVFL
                     IIALASSKWTYYLLLLPISIAYAIYTPVGIKFGKPTYEYIASIFATDMMESKEFIAQL
                     PILNIAAGIAIVLAVIFYRKITNRYQIRFLRNKTFVISAFVLMLFSLAPFKFFQEFYN
                     SSLKVKKELEVLNNLTLDSQWGQSTLSSTSNYDDYVLIMGESARKDYHHAYGYPAANT
                     PFMSSAKGTLIDGLTSGGTNTIASLRLMLTKPDTEKWEANYGLTLIDLIKSTGIKTYW
                     ISNQGYLGNYDTPISSIGNKSDVKIFTKAGDSLNTNVSDFELLPHFAKVIEEPAQGKR
                     FIFLHLYGSHPITCDRLTDYPKMFDDDKLPKRYFNVNCYVSSIKKTDELLKRVYDLLV
                     KNQENHQRSFSMVYLSDHGLSHEVSKENIVIHNGKDRSKLHYDIPLFKISSDDTQRNE
                     YKAFKSGLNFTNGIANWIGIENPLLDKEINLFNEQNDKSDYGLKKIIETQSTVEDPAV
                     PIPESYLYKATN"
     gene            complement(3894..4745)
                     /gene="tsf"
                     /locus_tag="PXE26_000795"
     CDS             complement(3894..4745)
                     /gene="tsf"
                     /locus_tag="PXE26_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HDL5593401.1"
                     /translation="MAEITASLVKELRERTGAGMMECKKALVEANGDIELAIDNMRKS
                     GQAKAAKKAGRVAAEGVILARVASGFGVLVEMNCETDFVAKDAGFLELANEVADFAVA
                     NKGTTIEALQAQFEEKRAALVAKIGENMNIRRVQYLEGEVIAQYLHGAKIGVLVAGAG
                     SEDELKKVAMHVAASKPEFVNPEDVSADVVAKEREIQIEIAMNSGKPKEIAEKMVEGR
                     MAKFTGEVSLTGQPFVMDPSQSVGQYLKSVNTSVSNFIRLEVGEGIEKVEEDFAAEVA
                     KITGGNA"
     gene            complement(4841..5560)
                     /gene="rpsB"
                     /locus_tag="PXE26_000796"
     CDS             complement(4841..5560)
                     /gene="rpsB"
                     /locus_tag="PXE26_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005645552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HDL5593402.1"
                     /translation="MAQVSMRDMLNAGVHYGHQTRYWNPKMKPFIFGARNGVHVINLE
                     KTLPLFNEALAELTRIASNNGKVLFVGTKRAASDAVKAAAVESQQFYVNHRWLGGMLT
                     NWKTVRQSIKRLKDLETQTQDGTFDKITKKEALMRTRELEKLELSLGGIKDMNGLPDA
                     IFVIGADHEHIAIKEANNLGIPVFAIVDTNSTPDGVNYIIPGNDDATRAIQLYLDSAV
                     AAIKEGRGVETVEVAEEASAE"
     gene            5905..6933
                     /locus_tag="PXE26_000797"
     CDS             5905..6933
                     /locus_tag="PXE26_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5593403.1"
                     /translation="MKKTLSALAIAAATFTSTSTLAANEVNVYSYRQPYLIEPMLKNF
                     EKDTGIKVNIIFADKGLVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQKIDSKVL
                     EKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLDLAKPEYKGKVCVRSG
                     KNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIGN
                     SYYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHSPNKANAVKLIEYLS
                     GEKAQGLYAELNHEYPVKEGIEPSAIVKGWGTFKSDTIKLEDIAKNYEAALKLVDEVK
                     FDDFSEKK"
     gene            7056..8702
                     /locus_tag="PXE26_000798"
     CDS             7056..8702
                     /locus_tag="PXE26_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5593404.1"
                     /translation="MRSQFCWKSIAALTTFIVLLPLIAICYHALQGDNENLAHLWQTM
                     LPIYLKNSTLLVLGTVFLALIFALPTAWIVANYRFWGQRTLQWLLCLPLAMPAYLIAY
                     LYTDLLDYSGAFQGWLRSIFGWTHPQDYWFPQIRTLYGACFVLALVLYPYIFLLVRVA
                     LLEQSENLTHSAKMLGASPSQLFRRITLPLIRPSVAVGIALVAMETLGDFGTVAYFAV
                     PTLTTAIYDSWLGYHDLGTASQIAIFMLLMIFLFLSLEQYSRRKQKSYQRGYEKKSAF
                     KFLTGWKLALALAWCWGLLALAFFIPFGRLLYWAYDYFEQAWNLDFVQFSLNSLKVSI
                     IASVITVLIALLLHFSKRLNTRKILVKNDRLSLQLASLGYAVPGTVLAIGLLSPLTFA
                     DHQLHAWLKSLELSPVGLIFSGSLFALVLAYTIRFLAMAIGSLETSLNKISPSLDMAS
                     QTLGKNGSAMLVKIHIPLIYKGILTAGLMVFIESMKELNASLLLRPFNFDTLATYVFT
                     FTSDEQLERAALPAIVLVLVGLLPVIWLTRSLISQSEKER"
     gene            8712..9722
                     /locus_tag="PXE26_000799"
     CDS             8712..9722
                     /locus_tag="PXE26_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5593405.1"
                     /translation="MSVLTINHLNLNFGSTKVLQNLHLAVNQNEIICLLGASGCGKTT
                     LLKAIAGLLPIEQGDIHLAGECLKSKAVEERQIGLIFQDYALFPHLTVADNIQFGLSK
                     LPKVQQKAITEKMLSVVHLQGFESRFPHELSGGQQQRVAIARALACQPELLLLDEPFS
                     NIDSQTRYAMIQEIKQILKSQNVPAIFVTHSKEEAFAFADKIAVMDQGKIIQFGKPNE
                     LYHSPVNPFVADFLGGTNYLNCNVTEDNVLCSPIGEFRLFPEMNVQKGRYRWLLRPEQ
                     IILKPNELGLGKVVGKLFLGLYYRYQVEIKGIEIVTYQSQELKIGEQVEVGFQVREFI
                     LF"
     gene            9732..10358
                     /locus_tag="PXE26_000800"
     CDS             9732..10358
                     /locus_tag="PXE26_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family oxidoreductase"
                     /protein_id="HDL5593406.1"
                     /translation="MKIEVWSDYACPFCYIGKRHLEQALAQFEGEVEVVFRAFELDPH
                     ANGEPEGDIQQRLMRKYQKTAEQADEMIRYVEQAGKQAGLDLRYRTTQYTRTFEAHRL
                     AKFAESKDLGEAMVERLFKAYFTDNTILAKRTELISLALDIGLERDEIAQLLTGDDFG
                     HEVREDERVAHKYGIHSVPFFVINEKLGVSGAQPPEILLDAIKQALQK"
     gene            complement(10420..11910)
                     /locus_tag="PXE26_000801"
     CDS             complement(10420..11910)
                     /locus_tag="PXE26_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 domain-containing protein"
                     /protein_id="HDL5593407.1"
                     /translation="MSLYQIARTETGKVISLNAKMANRHGLIAGATGTGKTVTLRKLA
                     ESLSDDGVPVFLVDVKGDLSGSVQAGNFSGKIAERILQFNLGGEDYLKGYPVSFWDVF
                     GTSGIPLRITISEMGPMLLSRLLNLNDTQGGLLNLVFRVADDRGLLLIDLKDLRALLK
                     FVADNAKEFQLEYGHISAASVGAIQRALLRLENEGADNLFGEPALDLHDWIQTRNGRG
                     VINMLNAEKLINSPRVYSAFLLWFMAELFENLPEVGDPEKPTFVLFFDEAHLLFDDAP
                     KALVDKIEQVVRLIRSKGVGVYFVTQNPLDIPDSVLGQLGNRIQHALRAFTPRDQKAV
                     KSAAETFRANKEVNVVEAITQLGVGQALVSVLDEKGMPTPVEIAYIYPPKSQLAPLAT
                     GERDSLVKQDDLYHHYSQYVDNESAFELLNAKAEAIKAEQAAAEEANNDFFGGILSSI
                     FGSKKKKDQSITEQVVSQVAHSVGRNLRNQVTKQIMRGILGAITKK"
     gene            complement(11969..13204)
                     /gene="rhlB"
                     /locus_tag="PXE26_000802"
     CDS             complement(11969..13204)
                     /gene="rhlB"
                     /locus_tag="PXE26_000802"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlB"
                     /protein_id="HDL5593408.1"
                     /translation="MSNHLTEHRFIDFPIHANVLNALDSKGFEFCTPIQAKTFPITLK
                     GKDIAGQAQTGTGKTLAFLIATFNHLLNNEIETSKNQPRALILAPTRELAVQIGADAE
                     LFLKHSDLKLALAYGGDGYDKQVQEIEKGVDILVGTTGRVIDYVKQGIINLDKIQVIV
                     LDEADRMFDLGFIKDIRYLMRKAPKPSERLTLLFSATLSAKVRELAYEDMDNAEYIEI
                     EPLQKTGHRIKEELFYPSNEDKMALLLTLLEEEWPERCMIFANTKHKCEEIWQYLSAD
                     GHRVGMLTGDIPQKKRLSLLDNFTKGNLDILVVTDVAARGLHIPDVTHVFNYDLPDDK
                     EDYVHRIGRTGRAGESGHSISFACERYAVNLPAIEEYIGHQIPVSQYDKESLLTLPKV
                     NRSRSKKTFLAKTKKNSRN"
     gene            complement(13292..14014)
                     /gene="recO"
                     /locus_tag="PXE26_000803"
     CDS             complement(13292..14014)
                     /gene="recO"
                     /locus_tag="PXE26_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HDL5593409.1"
                     /translation="MTIDQWQRAFVLHRREYSENSLLVEFFTEHHGRITLLAKGARRA
                     RSPLKAVLQPFTPLLLRWSGKGDLKTLTKAEPAALTLPMETLSLYSGFYINEVLARVL
                     ENQTAYPELFQHYLRCITELATQKQIEPILRTFEFHTLKALGYGVDFTHCAATGLPVD
                     PKMTYQFQENQGFIASLLQNNQSFLGSDLLAFAQLDFSEKSTQQAAKRFTRMALKPYL
                     GSQPLKSRELFQSILPNKLKSG"
     gene            complement(14244..15161)
                     /gene="era"
                     /locus_tag="PXE26_000804"
     CDS             complement(14244..15161)
                     /gene="era"
                     /locus_tag="PXE26_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013525392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HDL5593410.1"
                     /translation="MTEQIQTPAKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRK
                     AQTTRHRIVGIHTEDQYQAIYVDTPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVE
                     GTKWTEDDEMVLNKLRSAKAPVLLAINKIDNIKEKEELLPHITELSQKFDFAEILPIS
                     AQRGKNVHILQKFVRQSLRQGEHHFPEEYVTDRSQRFMASEIIREKLMRFTGEELPYS
                     VTVEIEQFKMNERGVYEINGLILVERDGQKKMVIGAGGQKIKTIGIEARKDMERLFDN
                     QVHLELWVKVKAGWADDERALRSLGYMDE"
     gene            complement(15264..15938)
                     /gene="rnc"
                     /locus_tag="PXE26_000805"
     CDS             complement(15264..15938)
                     /gene="rnc"
                     /locus_tag="PXE26_000805"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HDL5593411.1"
                     /translation="MQLERLQKKLGYQFHNLDYLIQALTHRSAATKNNERLEFLGDSI
                     LNFTIGKVLYDKFPKANEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGG
                     FRRESILSDCVEAIIAAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEF
                     LQGRKLPLPEYDVLDIKGEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKALA
                     VVKTKK"
     gene            complement(15984..16943)
                     /gene="lepB"
                     /locus_tag="PXE26_000806"
     CDS             complement(15984..16943)
                     /gene="lepB"
                     /locus_tag="PXE26_000806"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDL5593412.1"
                     /translation="MAQFMPIIFLGIIYGIWQWLDSMQLPNTISIILVALVIICGGFW
                     AFYKFSADPRRKQAIVLQQKRLGRELTAEEIAEIQPKSAVGEFFASLFGILFFVTVLR
                     SFLFEPFQIPSGSMEPTLRVGDFLVVNKFSYGIKDPIWQNTLIETGKPERGDVIVFKA
                     PAQPHVDYIKRVVAVGGDKIKYDFATQQLTVTKANGETKVFEYSEGKPNPEFFYHGEM
                     QVERTEKGNVTHQILNHPMAFNYAPYFYQQEGQAEGEWVVPQGYYFVMGDNRDNSEDS
                     RFWGFVPERNIVGKATFIWLSLDKKANEFPTGLRFSRMFTSIN"
     gene            complement(17030..18823)
                     /gene="lepA"
                     /locus_tag="PXE26_000807"
     CDS             complement(17030..18823)
                     /gene="lepA"
                     /locus_tag="PXE26_000807"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018345454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HDL5593413.1"
                     /translation="MQNIRNFSIIAHIDHGKSTLSDRLIQTCGGLSDREMEAQVLDSM
                     DLERERGITIKAQSVTLNYKAKDGEIYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV
                     DAGQGVEAQTLANCYTAIEIDLEVVPILNKIDLPAAEPERVAEEIEDIVGIDAIDAVR
                     CSAKTGLGIEDVLEEIVKKMPAPEGDAEAPLQALIIDSWFDNYLGVVSLVRVKNGVLK
                     KGDKIKVMSTGQSYNVDRLGIFTPKQVDTTELKTGEVGWVVCAIKDILGAPVGDTLTH
                     HHNPATEVLPGFKKVKPQVYAGLFPISSDDYEAFRDALGKLSLNDASLFYEPETSSAL
                     GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVVQTSGETIYVDSPSKLPA
                     INNIAEIREPIAECNMLVPQEFLGNVITLCVEKRGVQTNMVYHGNQIALTYEIPMGEV
                     VLDFFDRLKSTSRGYASLDYGFKRFQTADMVRVDIMINGERVDALAIIVHRANAAYRG
                     RELVEKMRELIPRQQFDIAIQAAIGNHVIARSTVKQLRKNVLAKCYGGDVSRKKKLLQ
                     KQKEGKKRMKSLGNVEVPQEAFLAILHVGKD"
     gene            19096..20325
                     /locus_tag="PXE26_000808"
     CDS             19096..20325
                     /locus_tag="PXE26_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HDL5593414.1"
                     /translation="MQFREINPSPRLLMCPGPTDADPRVLRAMSAPILGQFDPEFTSL
                     MNETMEMERRLFQTKNEQTYVVNSTSRGGLETVLTAAICPGDKVLIPAFGRFGYLLNE
                     ILARSGADITIIEREWGTVFEPEEIEAELKKGGYKAVAIIHGETSTSMMQPLEEIGKI
                     CKQYDAMLIVDTVATLGGVDIRVDEWGIDACIGGTQKCISAPSGTALITYNKRIEEII
                     AKRKRVEKGIRAESDVDGTLPPIPSNYLDLAQLQDYWSPRRLNHHTETTSAQYGVHEA
                     LRIILQEGLEARFARHILNDKALCAGLEAMGLKIFGDRKHKAPVVTAFHIPEGMSGPA
                     LRSDILNHFGIELATSFGPLDGKVIRIGNMGFSSQKRNVLLTLGALEAVLLSHKVKVP
                     SGDAVAAALAVYKEADK"
BASE COUNT         5962 a         4333 c         3775 g         6280 t
ORIGIN      
        1 attaatttta ctcaaagcta aggagtcatt atgcaattag tatttatccg tcacggtttc
       61 agtgaatgga atgctaaaaa cttatttacc ggttggcgtg atgttaattt aacagaacgt
      121 gggattgaag aagcaaaatc tgccggtcaa aaattaaaag cagccggttt tgaatttgat
      181 attgcgttta cttcggtttt aacccgtgcg atcaaaactt gtaacatcgt attagaagaa
      241 tcagaccaat tatggatccc tcaagtgaaa aactggcgtt taaacgagcg tcactacggt
      301 gcattacaag gtttagacaa aaaagaaact gctgaaaaat atggtgatga acaggttcac
      361 atctggcgtc gttcttatga catctctcca ccggatttag acccacagga tccaaactca
      421 gcacataacg accgccgtta tgctaactta ccaaaagatt taattccaaa tgcagaaaac
      481 ctcaaaatca cccttgagcg tgtgttacca ttctgggaag atcatattgc acctgcatta
      541 atttcaggta aacgcgtatt agttactgct cacggtaact cattacgtgc attagcaaaa
      601 cacatcgaag gcatttctga tgcagacatt atggacttag aaatcccaac cggtcagcca
      661 ttagtgtatg aactagatga caacttaaaa gtaatcagca aacgttactt ataattggta
      721 aatttccgat aaaaaataac cgcttgtagt gcaacacatt acaagcggtt attttttgtt
      781 aattttttgc aaatggcaaa gaacaaaaat aaaggcgaat catacattcg ccttattgtt
      841 ttaaagtaga ttagaaatct aacaactctt tctcttttgc tgctaatact tcatcaactt
      901 ttttaatgaa ggtatcggtg attttttgaa tatcttcttc agctttgtgt tgttcgtttt
      961 cgctgatttc tttatctttt aataacgctt tgatttggtc attagcatca cgacgaacat
     1021 tacgaattgc cactttgcct tgctcacctt ctgctttaac gattttgatt aaatcacgac
     1081 gacgttcttc cgttaatggt ggaagcggaa cacgaatggt tgtgccggca gaagatgggt
     1141 ttaaacctaa atctgaggtt aaaattgctt tttctaccgc agagattaaa gatttatcaa
     1201 atacgtttac cgctaaagta cgggcatctt cagctaccac gttcgctact tgacgtaatg
     1261 gagtcgcaga gccgtaatat tccacttgaa taccgtctaa taaagaaggt tgggcacgac
     1321 ctgtacgaat tttcgcaata tgccctttta aagcctcaag gcttttttcc atacgatctt
     1381 gggtatcttt cttgatttcg ttaatcattg attttttatc cttttattta gtaactgaga
     1441 gttaaacaga gaaaattaat tattcagaaa tggttgtacc ttcttcagta ccgaatacca
     1501 cattgcgtaa cgcccccggt ttgcccatat taaagacacg aattggcatt ccgtggtcac
     1561 gagcaagcgt gaatgctgct aagtccatta cttgtaattc ttgctcaata acttgcgcat
     1621 acgttaattt attatatagt tttgcatctg cgtattttgc tgggtcttta tcataaacgc
     1681 catcaacttt agttgctttt aataccacat cagcttcaat ttcaatacca cgcaagcaag
     1741 cagctgaatc ggtggtaaag aacgggctac ctgtaccggc agagaaaatc accacacgtt
     1801 tttcacgcaa cattttaatt gcttcagacc agttgtaagt gtcgcaaatc ccatttaatt
     1861 ggaacgcaga cattaattta gcatttacct ctgcacggtg taaggcatca cgcatagcca
     1921 aaccgttcat tacggtggca agcataccca tatggtcgcc cactacacgg ttcattcctg
     1981 ctttggctaa ttttgcacca cggaataagt taccgccgcc aagtaccaca ccaacctcaa
     2041 cgccttcagc aagtaattct ttaatctcta acgccatacg atccaaaata gacgggtcga
     2101 taccaaaacc ttcactgcct tgtagggctt caccacttaa tttgagaaga attcgcttat
     2161 aaataggttt gctcatttta attgcctctt aactgtatgg actaaacaca aaattacgtt
     2221 attatagaac aatccaatat aacgataaac taaaaatatt cactacaatg aaatccaaac
     2281 aacttttcgg cattcttgtc gctatttcgc tggcaactgc tgctagctgt ttaatgctaa
     2341 tcggatcagg cttttttcca aatccgagta tctttgaagt cattttgggc gtattcctca
     2401 tcatcgctct tgccagctct aaatggactt attatttact cttactgcca atcagcatcg
     2461 cttatgcaat ttataccccg gttgggataa aattcggtaa accgacttac gagtatatcg
     2521 cctctatttt tgctaccgat atgatggaaa gcaaagagtt tattgctcaa ctgccgattt
     2581 taaatattgc ggcgggcatt gcgattgtac tagcggtcat tttttatcga aaaattacca
     2641 atcgctatca aatccgtttt ttacgcaata aaacattcgt gatttcggct tttgtattaa
     2701 tgctgttttc ccttgcaccg tttaaatttt ttcaggagtt ctacaattcg agcctaaagg
     2761 taaagaaaga attggaagtg ctgaacaatt taacgctaga ttcacaatgg ggacaatcaa
     2821 ccctcagctc aacttcaaac tacgatgatt atgtactgat tatgggcgaa agtgcgagaa
     2881 aggattatca ccacgcctat ggctatccgg ctgccaatac gccttttatg agttcggcaa
     2941 aaggaacctt gattgacggt ttaacctccg gtggcacaaa cactatcgcc tcattacgct
     3001 taatgctcac taagcccgat acggaaaaat gggaagcaaa ttatgggtta accttaattg
     3061 atttaatcaa atctaccggt atcaagacct attggatctc aaatcaaggc tatttgggca
     3121 attacgatac gccgatttcc tctatcggta ataaaagtga tgtcaaaatt ttcactaaag
     3181 ccggcgattc attaaatacc aatgtgagcg attttgaatt gttaccgcat tttgctaaag
     3241 tgattgaaga acctgctcaa gggaagcgtt tcatctttct gcatttatat ggctcgcatc
     3301 ctattacctg cgatcgtctc accgattacc cgaaaatgtt tgacgatgac aaactgccaa
     3361 aacgctactt taatgtaaat tgctacgtgt catctatcaa gaaaaccgat gaattgctga
     3421 aacgggtata tgatttgcta gtgaaaaacc aagaaaatca ccagcgttca ttctcaatgg
     3481 tttatttgtc tgatcacggt ttatcgcacg aggtttcaaa agagaacatt gttatccaca
     3541 atggaaagga tagaagtaaa ttacactacg atattccgct gtttaaaatt tcaagcgatg
     3601 atacccaacg taatgagtat aaagccttta aatccggctt aaacttcact aatggtattg
     3661 cgaattggat tggtatcgaa aatccgttat tagataaaga aattaatctt tttaacgaac
     3721 aaaacgataa aagtgattat gggctaaaga aaatcattga aacgcagtct actgtagaag
     3781 atccagctgt tcctattcct gaaagctact tatataaagc gactaattag caaaagtaag
     3841 taacaaaaaa gcaggcttta agcctgcttt tttagttttt agtatcagaa aaattaagcg
     3901 ttaccgccag tgattttcgc tacttctgct gcgaaatctt cttctacttt ctcaatacct
     3961 tcacctactt ctaaacgaat aaagttagaa actgaagtat ttactgattt taaatattga
     4021 cctacagatt gagatggatc cattacaaac ggctgaccgg ttaatgaaac ttcaccggtg
     4081 aatttagcca tacggccttc aaccattttt tctgcgattt cttttggttt accagaattc
     4141 atcgcaattt caatttgaat ttcacgttct tttgctacta catcagcaga aacatcttct
     4201 gggtttacaa attcaggttt gcttgcagca acgtgcattg ctactttctt aagctcatct
     4261 tcagagcctg cacctgctac taatacacca attttcgcac cgtgtaagta ttgagcaata
     4321 acttcgcctt ctaagtattg aacacggcga atgttcatat tctcaccgat tttcgcaact
     4381 aatgccgcac gtttttcttc aaattgtgct tgtaatgctt cgatagttgt acctttattt
     4441 gcaactgcaa aatcagcaac ttcgttcgct aattctaaga aaccggcatc ttttgcaacg
     4501 aagtcagttt cacagttcat ttcaactaat acgccaaaac ctgaagcgac acgagcaagg
     4561 attacacctt cagctgcaac acgacctgct tttttagccg ctttcgcttg accggattta
     4621 cgcatattat cgattgctaa ttcaatatca ccgttcgctt caactaatgc ttttttacat
     4681 tccatcatac ctgcgccggt acgttcacga agttctttaa ctaatgatgc tgtgatttca
     4741 gccattttaa attcccctta tttgatatgg taaaacaggc tctcacctgc ctagaaattt
     4801 cattgtttag ggcaggttaa aacctgcccc ctcaactgaa ttattccgca gaagcttctt
     4861 ctgctacttc aacagtttca acaccgcgac cttctttgat tgcagcaact gctgaatcta
     4921 agtaaagttg gatagcacgt gttgcatcat cgttaccggg aatgatgtag ttaacgccat
     4981 ctggagttga gttagtatca acaatcgcaa ataccggaat acctaagttg tttgcttctt
     5041 taattgcgat atgttcgtga tcagcaccga taacaaaaat tgcatccggt aaaccgttca
     5101 tatctttgat accgcctaag cttaactcta atttttctaa ctcacgagta cgcattaacg
     5161 cttctttttt agtgattttg tcaaaagtac cgtcttgagt ttgagtttct aaatctttta
     5221 agcgtttgat tgattgacga actgttttcc agttagtcaa cataccacct aaccaacggt
     5281 ggtttacgta gaattgttgg ctctctactg ccgctgcttt aacagcatca cttgctgcac
     5341 gttttgtacc aacaaataat actttaccat tgttactagc aatgcgagtt aattccgcta
     5401 atgcttcgtt gaataaaggt aaagtttttt ctaagttgat tacgtgaaca ccattacgag
     5461 caccaaagat gaatggtttc atttttgggt tccagtaacg tgtttggtga ccatagtgaa
     5521 cgcctgcgtt aagcatatcg cgcatagaaa cttgtgccat aagaattttc cttcaaagtt
     5581 gtttgttttg ccacttatga acggcaaaac ggggtttagc ctccacatat cctagaaaat
     5641 caatctgtta aagacacccc aattcctagc ttgtgatatg tgtgtgtttt agtgttaaaa
     5701 aataaatgtg tacgttttgc ctgaatagac aaaaacgggg cgtattatgc caaaaaacaa
     5761 acaatttgcc aattatttta ttgctctctt cgcattacta aatcaagctc aaaaataaaa
     5821 accgttctca ttattgacta aaaaaatggg gaggtttaga atgtctttca ttctgttatg
     5881 aaaacctgtc tgaaggagac tatcatgaaa aaaacacttt ctgcacttgc tattgctgca
     5941 gccactttta catcaacttc aacgcttgct gcaaatgaag tgaatgttta ttcttaccgc
     6001 cagccttact taattgagcc aatgctaaaa aactttgaaa aagatactgg cattaaagta
     6061 aacatcatct tcgctgataa agggttggtt gatcgtgtaa aacaagaagg tgaattaagt
     6121 cctgctgatg tgcttttaac agtagatatt tcacgcgtaa tggaaattgt taacgctgat
     6181 cttgcacaaa aaattgactc taaagtgtta gaaaaaaata ttcctgcaca attccgtgac
     6241 tctaacgacc aatggtttgg tttaaccaca cgtgctcgtg ttatctacac gtcaaaagat
     6301 cgtgtaggta aattaccagc aggctttgac tacctagatt tagctaaacc agagtataaa
     6361 ggtaaagtct gcgtgcgttc aggcaaaaac tcttacaatg tctcactatt cgcggcgatg
     6421 atcgaacatt acggcattga aaaaaccaaa gcattcttag aaggcttaaa agcgaactta
     6481 gcacgaaaac cacaaggtgg tgaccgtgat caagtaaaag caattaaaga aggcatctgt
     6541 gattactcta tcggtaacag ctactactac ggcaaaatgt tagatgatga gaaacaaaaa
     6601 tcgtgggctg aagcagcgat tattaatttc ccgagtggtg aacacggcac gcacaaaaac
     6661 atcagcggcg tagttattgc aaaacactca ccaaataaag caaacgcggt gaaattaatt
     6721 gaatacctaa gtggcgaaaa agcacaaggt ttatatgctg aacttaacca cgaatatcca
     6781 gtaaaagaag gcatcgagcc atcagcaatc gtaaaaggtt ggggtacgtt caaatcagat
     6841 accatcaaac ttgaagatat cgcaaaaaat tacgaagccg cattaaaatt agttgatgaa
     6901 gtgaaatttg acgatttctc tgagaaaaaa taatcaaccg ataagcggtc atttttccac
     6961 aaaaatttgc aaaattttgt taaaatacaa ccgcttgcaa aaggacgcat tttgcgtcct
     7021 tttatttttt tatgaaataa caggcttaaa gaaaaatgcg atcacaattt tgctggaaaa
     7081 gtattgctgc cctaacaact tttatcgttt tgcttcctct tattgcaatt tgctatcacg
     7141 cattgcaagg ggataatgaa aaccttgctc acctttggca aacaatgttg ccaatctatc
     7201 ttaaaaactc aactttatta gtattaggaa ccgttttcct tgcactgatt tttgctctgc
     7261 ctaccgcttg gattgtggca aattaccgtt tttgggggca aagaacctta caatggttac
     7321 tttgtttgcc tctcgctatg cctgcttatt taattgccta tttatatacc gatttattag
     7381 attactcagg tgcttttcaa ggctggctgc gtagtatttt tggctggact catccgcaag
     7441 attactggtt tcctcaaatt cgtacattgt atggtgcttg ctttgtgctt gcgttagtac
     7501 tatatccata cattttttta ttagtgcgag ttgccttatt agaacaatct gaaaacttaa
     7561 cacacagtgc aaaaatgctc ggggcttcgc cctctcagtt gttccgtcga attacgctgc
     7621 cattaattcg accttctgtt gccgtaggca ttgcattagt ggcaatggaa acgcttggcg
     7681 atttcggtac tgtggcctat tttgccgtgc caacacttac tacggcaatt tatgattcgt
     7741 ggctaggcta tcacgatctt ggtactgcca gccagattgc gatctttatg ttgctaatga
     7801 ttttcctgtt tttaagttta gagcaatata gtcgccgtaa acaaaaaagc tatcaacgtg
     7861 gctatgaaaa gaaatcagcc tttaaatttt taactggttg gaaattagca ttagcccttg
     7921 cttggtgctg gggtttattg gcgttagcct ttttcattcc gtttggcagg ttgctctatt
     7981 gggcatacga ctatttcgag caagcgtgga atttagactt tgtccaattt tcgcttaata
     8041 gtttgaaagt atcgatcatc gcctccgtga taacggtact gattgctcta cttctgcatt
     8101 tttctaaacg tttgaatacc cgcaaaattt tagtcaaaaa tgaccgcttg tcattacaac
     8161 ttgcctcact gggctatgcg gttcctggca cagtattagc gatcggttta ctttcgcctt
     8221 taacatttgc cgatcatcaa ctccatgctt ggctaaaaag ccttgaatta tcacccgttg
     8281 gattgatttt ttcaggctca ctctttgcat tagtattagc ttataccatc cgatttttag
     8341 caatggcaat tggcagcctt gaaacttcgc taaataaaat ctctccatcg ctggatatgg
     8401 cgagccaaac gcttggtaaa aatggctcag caatgttagt aaaaattcat atccctttaa
     8461 tttataaagg tattttaact gcaggattaa tggtctttat tgagagtatg aaagagctaa
     8521 atgcttctct gctacttcgc ccatttaatt ttgatacact cgcaacctat gtgtttacct
     8581 ttacatcaga cgagcagctt gagcgtgctg ctctgcctgc catcgtattg gtgttagtcg
     8641 gtttactgcc tgttatttgg cttaccagat cccttatttc gcaatctgaa aaagaaagat
     8701 aaaggaattt tatgtctgtt ttaactatta atcatctcaa cctcaatttc ggcagtacaa
     8761 aggttttaca aaatctccat cttgctgtga atcaaaatga aattatctgt ttgctaggtg
     8821 caagtggctg tgggaaaact acactgctca aagccattgc aggtttattg ccaattgagc
     8881 agggagatat tcatttagcg ggtgaatgcc taaaaagtaa agccgtggaa gagcgacaaa
     8941 tcgggctgat tttccaagat tacgctcttt ttccacactt gacggtagcc gataatattc
     9001 aatttggctt atccaaattg ccaaaagtac aacaaaaagc aattaccgaa aaaatgcttt
     9061 cagttgtgca tttacaaggc tttgaaagcc gttttccaca cgaactttcg ggcgggcaac
     9121 aacagcgtgt cgctattgcc cgagcattag cctgccagcc agaattgcta ctgttagatg
     9181 agccgttttc caatattgac agccaaactc gctatgcaat gattcaagag atcaagcaaa
     9241 tcttaaaaag ccaaaatgtg cccgctattt ttgtaaccca tagcaaagaa gaagcctttg
     9301 catttgccga taaaattgcc gtgatggatc aagggaaaat tattcaattt ggtaagccaa
     9361 acgagctata ccattctcca gttaatccat ttgtggcaga ttttttaggt ggcacaaact
     9421 atcttaactg taatgtaacg gaagacaacg tgttatgcag ccctattggc gagttccgac
     9481 tcttccctga aatgaacgtt cagaaagggc gttaccgttg gcttcttcgc ccagaacaga
     9541 ttatcttaaa acccaatgag ctaggtttag gtaaagtggt aggcaaactg tttttaggcc
     9601 tatactaccg ctatcaggtt gaaattaaag gcattgagat agtaacttac caatctcaag
     9661 agctgaaaat tggcgaacaa gtggaagtgg gcttccaagt aagagagttt atcctatttt
     9721 aaggagaata tatgaaaatt gaagtttggt cagattatgc ctgcccgttt tgttacatcg
     9781 gcaaacgcca cttagagcaa gccctagccc aatttgaagg cgaggttgaa gtggttttcc
     9841 gagcctttga gcttgatccg cacgctaacg gcgaaccgga gggcgatatt cagcaacgcc
     9901 taatgcggaa atatcaaaaa accgcagaac aagctgatga aatgattcgt tatgtggaac
     9961 aagccggcaa acaagctggg ctagatttgc gttaccgcac cacccaatac actcgcacct
    10021 ttgaagctca tcgcttggcg aaatttgcag aaagtaaaga cttaggcgaa gcaatggttg
    10081 aacgtttatt caaagcctat tttaccgata acactattct agctaaacgc acagagctta
    10141 tcagtttagc cttagacatt ggcttagagc gtgatgaaat cgctcaactg ctcacaggtg
    10201 atgatttcgg gcacgaagtc cgtgaagatg agcgagtcgc tcacaaatat ggcattcaca
    10261 gcgtaccgtt ttttgtgatc aatgaaaaac tcggggtatc cggggctcaa ccgccagaaa
    10321 tattacttga cgctatcaaa caggcattgc aaaaataatc cgaaaaaaga ccgcttgtta
    10381 agctaaacaa gcagtcttat tcttcttata atttacaatt tattttttgg tgatcgcacc
    10441 taaaatacca cgcataattt gtttggtgac ttggttgcgt aaatttctgc caactgaatg
    10501 cgccacttgg ctaaccactt gttcggtaat cgattgatct tttttcttct tcgagccaaa
    10561 aatggaagag agaataccgc caaagaagtc attgtttgct tcttctgccg cagcctgctc
    10621 tgctttaatt gcttctgctt tcgcattaag taattcaaac gcagattcat tatcgacata
    10681 ttggctgtag tgatgataga gatcatcttg cttcactaaa ctatcacgtt cgcctgtggc
    10741 taatggagct aattggcttt ttggtggata gatataggca atttctacag gcgttggcat
    10801 acctttttca tctagcaccg aaaccaacgc ttgccccaca ccaagttgcg tgatggcttc
    10861 taccacattt acctctttat tcgctcggaa agtttccgct gctgatttta ccgctttttg
    10921 atcacgtggc gtgaaagcac gcaaagcgtg ttggatacga ttgccaagct gccctaatac
    10981 tgaatcaggt atgtccaacg gattttgcgt aacaaaataa acacccaccc cttttgagcg
    11041 aattaaacga accacctgtt caattttatc caccaatgcc ttaggggcat cgtcaaacaa
    11101 taaatgagct tcatcaaaga ataaaacaaa cgtcggtttt tctgggtcgc caacttctgg
    11161 caaattctca aagagctctg ccataaacca aagcaggaat gcactgtaca ctcttggtga
    11221 gttaattaat ttttctgcat tcaacatatt gattacacca cgcccattac gggtttggat
    11281 ccaatcgtgc aaatctaatg caggctcacc aaataaatta tctgcccctt cattttcaag
    11341 ccttaataac gcacgctgaa tagctccaac gcttgctgca gaaatatgcc catattccag
    11401 ttggaattct ttcgcattat ctgcgacaaa tttaagcaac gcacgcaaat cttttaaatc
    11461 aattagcaat aaacctctgt catctgccac acgaaaaacg agatttaaca agcctccttg
    11521 ggtatcgttt aaattgagta aacgagaaag taacatcggt cccatttcgg aaatagtgat
    11581 tcgaagtggg atacctgatg taccaaatac gtcccaaaac gaaactggat agccctttaa
    11641 gtaatcttct ccccctaaat taaactgtaa aatgcgttct gcaatttttc ctgaaaaatt
    11701 acccgcttgt accgagcccg aaagatcacc ttttacatct actaaaaata ctggcacgcc
    11761 atcatcactc aaagattctg ccaatttgcg taaagtaacc gttttacctg tacccgtagc
    11821 cccagcaatt aaaccgtgcc gatttgccat tttggcatta agcgaaataa ctttgcctgt
    11881 ttctgttcga gcaatttgat acaaactcat ctttcattct cttaaaggta aattaatttt
    11941 ttgttctcat catataaaaa tttatcactt aattacggct attctttttc gtttttgcca
    12001 agaacgtttt tttacttctt gagcggttca ctttcggtaa agtcagtaag gattccttgt
    12061 cgtattgact cacaggaatc tgatgcccaa tatactcttc aattgcaggc aaattaaccg
    12121 cataacgctc gcaagcaaaa ctaattgaat ggccgctctc ccctgctcgc cccgttctac
    12181 caatacgatg aacgtaatct tctttatcat caggcagatc ataattgaaa acgtgcgtga
    12241 catctggaat atgcaatcca cgagccgcaa catctgttac cactaaaata tccaaattgc
    12301 ctttggtgaa attatccagc aaagaaaggc gttttttctg cggaatatcg ccggttagca
    12361 ttccaacccg atgtccgtct gccgataaat actgccagat ctcttcgcat ttatgcttgg
    12421 tgttggcaaa aatcatacaa cgctccggcc actcttcctc aagcaatgtc agcaacaatg
    12481 ccattttgtc ttcattcgag gggtaaaata gctcttcttt aatacgatgt ccggtttttt
    12541 gtagtggctc aatttcaata tattccgcat tatccatatc ttcataggca agttcccgca
    12601 cttttgccga aagcgttgcc gaaaagagca aagttaaacg ttctgaaggc ttaggtgctt
    12661 ttcgcattaa ataacggata tctttaataa aaccaagatc aaacattcga tctgcttcat
    12721 ctagcacaat cacttgaatt ttgtctaaat tgataatgcc ttgttttaca tagtcaatca
    12781 ctcgacctgt tgtaccgaca agaatatcta cccctttttc aatttcttga acttgtttgt
    12841 cgtaaccatc accaccgtat gccaaagcta gttttaaatc agaatgtttt aaaaacagct
    12901 cggcatctgc cccaatttga accgccaatt cacgggttgg agcaagaatt aatgctctcg
    12961 gctgattttt tgacgtttcg atttcgttat tcaataaatg gttaaaagtt gcaatcaaaa
    13021 aggcaagcgt tttccctgta cctgtttgag cttgccctgc aatatctttg cctttcagcg
    13081 taatcggaaa ggtttttgcc tgaatcggcg tacaaaattc aaagcctttg ctatcaaggg
    13141 catttagtac attagcgtga atcgggaagt caataaagcg gtgttcggta agatgattag
    13201 acatagtatt tccttgataa ttgtgatgtg acaagcggtc ttttttacac atttttttgc
    13261 aaaatagcat attgggcgtt ttttctcaaa tttaaccgct tttgagttta ttcggcaaaa
    13321 tagattggaa aagctctcgg cttttcagcg gttgtgaccc taaatagggc tttagtgcca
    13381 ttcgggtaaa acgtttcgct gcttgttgag tacttttttc tgaaaaatcc aactgagcaa
    13441 acgctaataa atcactgcct aaaaagctct ggttattctg taataatgag gcgataaagc
    13501 cctgattttc ctgaaattga taggtcattt tcggatcaac tggcaaaccg gttgccgcac
    13561 agtgcgtaaa atccacccca taacccaatg cttttaacgt atgaaattca aaggtgcgta
    13621 aaatcggctc aatctgtttt tgtgtggcaa gctcggtaat gcaacgtaaa taatgctgaa
    13681 ataattcagg gtaagcggtc tgattttcca atactcttgc aagtacctcg ttgatataaa
    13741 acccactata aagtgaaagc gtttccatcg gcaacgttaa tgcagccggt tctgctttgg
    13801 ttaaagtttt cagatcccct ttacccgacc aacgcaacaa caacggcgtg aacggctgta
    13861 aaaccgcttt caacggcgag cgagcccgcc ttgcaccttt agcaagtaaa gtaatccgcc
    13921 cgtgatgttc ggtaaaaaac tccactaata aactgttttc gctgtattca cgccgatgaa
    13981 ggacaaaggc tcgttgccat tggtctattg tcataatttc ttgttaatta tgaggttgta
    14041 atttacttct gccaaatctc cccctcccct ctttgctaaa gaggggagat cttgcagagt
    14101 atattttaaa gtcattttca ctatttaacc ttttatatag ataggaagat gaatttaaaa
    14161 tttctggaga actagtcccc ctctttagaa aagaggggtt aggggagatt tgattacgat
    14221 attaatgcta taacgggagc caactactcg tccatatacc ctaaacttct caatgctctt
    14281 tcatcatccg cccaaccagc ttttactttc acccaaagct caaggtgcac ttggttgtca
    14341 aataggcgtt ccatatcttt tcgagcttca atgccgatgg ttttgatttt ttgccccccc
    14401 gcaccaataa ccattttttt ctgaccatct cgttctacta aaatcaagcc attgatttca
    14461 tacaccccac gctcattcat tttaaattgt tcgatttcta ccgttaccga ataaggtaac
    14521 tcttcacctg taaaacgcat tagtttttca cgaataattt ctgatgccat aaagcgttga
    14581 gagcggtctg tcacatactc ttcaggaaag tggtgctcac cttgacgcag tgattgacgg
    14641 acaaatttct gtaaaatatg cacattttta ccccgttgtg ccgaaattgg cagaatttca
    14701 gcaaaatcaa atttttgtga aagctcggta atatgcggca gaagttcttc tttttccttg
    14761 atgttatcaa ttttattgat tgccaataaa acaggggctt ttgccgaacg caatttgttt
    14821 aacaccattt catcatcttc tgtccatttt gtgccttcca caacaaagat gatgagatct
    14881 acatcgccaa tagcagaact tgctgcacgg ttcattaaac gattaatcgc acgtttttct
    14941 tctatgtgta agcctggggt atctacataa atcgcttggt attgatcttc agtgtgaata
    15001 ccaacaatac gatggcgagt cgtttgagct ttgcgtgagg taatggaaat tttttgtcct
    15061 aaaatcttat ttaataatgt tgatttccct acatttgggc gaccaacaat cgcaataaaa
    15121 ccacaatagg tttttgcagg agtttgaatt tgttctgtca ttttgttttc ctttcattct
    15181 gtggaatgaa tttgatggtg caagcgtcca cgcttgtacc atttaattaa atctttagca
    15241 caagcgagga cgcttgcgct atcttacttt ttcgttttaa ccaccgctaa cgctttttct
    15301 gcggcatttt gttcggcttt tcggcggctg gtgccaatgc cgataaacac ttcctcgacg
    15361 ttaatcactt tacaggttac acggaaagtt tggttatgag cttcgccttt aatatctaat
    15421 acatcatatt caggcaatgg caattttcta ccttgtaaaa actcttgcag gcgggttttt
    15481 ggatcttttt gtgaatcgcc tggactgata tctttaagca aatctgaata ccaatcttcc
    15541 accttttcca ttgcttttgc catatcttga tcgagataaa tggccgcaat aatcgcttca
    15601 acacagtccg ataaaatcga ttctcggcga aaaccaccac tttttagctc tcctggacct
    15661 aattttaggt agtcgcctaa atcaaatttg cgagcaataa tcgctagagt ttgctcacgc
    15721 acaagagttg ctctcatacg gctaagctca ccttcattcg cttttggaaa tttgtcgtat
    15781 aatactttac caatagtaaa atttaaaatt gaatcgccta gaaattcaag acgctcattg
    15841 tttttggttg ccgcactgcg gtgtgttaag gcctgaatga ggtaatcaag gttatgaaat
    15901 tgataaccta attttttctg taatcgttct agttgcatag tttatgtgaa taaaggggcg
    15961 tatctcatac gcccctgtta agattaattg attgaggtaa acattctaga aaaacgaagc
    16021 cccgttggga attcatttgc ttttttatct aaacttaacc aaataaaagt ggctttacca
    16081 acgatgtttc tctcaggcac aaagccccag aaacgactgt cttcactgtt atcacggtta
    16141 tcacccatca caaaatagta tccttgtggc acaacccatt caccttctgc ttgcccttct
    16201 tgttggtaga aataaggtgc atagttaaat gccattgggt gatttaaaat ttgatgagtt
    16261 acattacctt tttcagtgcg ttctacctgc atttcaccgt gatagaaaaa ctcaggattt
    16321 ggcttgcctt cgctgtattc aaataccttt gtttcgccat tggctttagt aaccgttaat
    16381 tgctgagttg caaaatcata tttaatttta tcaccaccta ctgccaccac acgcttaata
    16441 taatcaacgt gtggttgtgc cggtgctttg aatacaatca catcgcctcg ttctggtttg
    16501 cccgtttcaa tcaaggtgtt ttgccagata ggatctttaa tgccgtagct gaatttattt
    16561 acgactaaaa aatcgcctac acgcaaggtt ggctccattg aaccacttgg aatttgaaac
    16621 ggttcaaata agaacgagcg aagtactgta acaaagaata aaatgccgaa aagtgaggca
    16681 aaaaattcgc ctactgcgga tttaggttga atttccgcta tttcttcagc ggttaattct
    16741 ctgcctaaac gtttttgttg tagaacaatc gcctgtttac gtcttgggtc agcactgaat
    16801 ttgtaaaacg cccaaaatcc accacaaata ataaccaagg caactaaaat aatggaaata
    16861 gtatttggca gttgcattga atcaagccat tgccaaatac cataaataat acctagaaaa
    16921 ataattggca taaattgtgc cactgaatgc tcctttttat tcaaaattgc aaagttttct
    16981 caaaatatga ccgcttgcaa gcggtcgtat tttacacgaa tattgacaat taatccttac
    17041 ccacatgaag aattgccaaa aatgcttctt gtggcacttc tacgttaccg agagatttca
    17101 ttcgtttttt accctctttt tgtttttgta gcagtttctt cttacgactt acatcaccac
    17161 cgtaacattt tgctaatacg tttttacgca actgttttac cgttgagcga gcaatgacgt
    17221 ggttaccaat tgccgcttga atagcgatgt caaattgttg gcgtggaata agttcacgca
    17281 ttttttccac taattcacgt ccacgatacg ccgcatttgc acggtgaacg ataatcgcca
    17341 acgcatcaac acgctcgccg ttaatcataa tatccacacg caccatatca gccgtttgga
    17401 aacgtttaaa accgtaatcg agtgaagcat aaccacgaga ggttgatttt aagcggtcga
    17461 agaagtctaa cactacttcg cccattggga tttcgtaagt taaggcgatt tggttaccgt
    17521 gatagaccat attggtctgt acgccacgtt tttccacaca aagggtaatc acgttgccta
    17581 ggaattcttg tggcacaagc atattacatt ctgcaatcgg ctcacgaatt tctgcaatat
    17641 tgttgattgc tgggagtttc gatgggctat ccacatagat cgtttcgcca ctggtttgca
    17701 ccacttcgta aactacggtc ggagcggtag taatcaaatc aagatcgtat tcacgctcta
    17761 aacgctcttg aatgatctcc atatgcaaca agcctaagaa gccacaccgg aagccaaagc
    17821 ccaacgcact tgaagtttct ggctcataga acaatgacgc atcatttagg cttaatttgc
    17881 ctaaagcatc acggaaggct tcgtagtcgt ctgaactaat cggaaataac cctgcataaa
    17941 cctgtggttt tactttctta aagcccggta atacttcagt tgctgggttg tggtggtggg
    18001 ttaatgtatc gcccactggt gcccctaaaa tatctttaat cgcacaaact acccaaccta
    18061 cttcacctgt ttttagctcg gtagtatcca cttgttttgg cgtgaaaata ccaaggcgat
    18121 ctacattgta agactgccct gtactcatca ctttaatttt atcgcctttt ttcagcacgc
    18181 catttttcac acgcactaaa gacacaacgc ctaaatagtt atcgaaccaa gagtcgataa
    18241 ttaacgcttg taatggtgct tccgcatcgc cttctggtgc aggcattttc ttcacgattt
    18301 cttctaaaac atcttcaatg cctaaacctg ttttagctga acagcgtact gcatcaatgg
    18361 catcaatgcc gacaatatct tcaatctctt ctgccacacg ctcaggctcg gctgctggta
    18421 aatcgatttt atttaaaatt ggcacaacct ctaaatctat ctcaattgcg gtataacaat
    18481 tcgccaacgt ctgtgcttcc accccctgcc ctgcatcaac cactaataaa gcaccttcac
    18541 aagcagcaag cgagcgagaa acttcatatg agaaatccac gtgccctggc gtatcaataa
    18601 agttgagctg ataaatttcg ccatctttcg ctttatagtt taaggttaca ctttgtgctt
    18661 taatagtaat tccacgctca cgctcaagat ccattgaatc taatacttga gcctccattt
    18721 cacgatctga taagccacca caagtttgaa ttaagcggtc tgataaagtc gatttgccgt
    18781 gatcgatatg agcgataatc gaaaagttac gaatattttg cattttcatc gggcagttaa
    18841 tgtcctgttt tgttatttgt ttatcaaaaa ttaatcgggg aattgtactt gaaatacaag
    18901 gttttgcaaa gaaaacaaat agcaataagc ggttattttt tcctaaaaat gtgcaaattt
    18961 cttgagaaaa atgaccgctt gcactcaccc taattgcaaa taatttctct aaaatataaa
    19021 aaacattgag caatcacaaa tttttattat agaatccata agttttttta attcattcaa
    19081 ttataggaaa taattatgca attcagagaa attaatccct cccctcgttt attaatgtgc
    19141 cctggcccaa cagatgctga cccacgtgtt ttgcgtgcaa tgtctgcacc cattttaggg
    19201 caatttgacc ctgagtttac ctcattaatg aatgaaacaa tggaaatgga acgccgttta
    19261 ttccaaacca aaaatgagca aacttatgta gtcaactcca cctctcgtgg tggcttagaa
    19321 actgttctaa ccgcagcgat ttgcccaggc gataaagtgt taattcctgc atttggtcgt
    19381 tttggttatt tattaaatga aattttagct cgtagcggtg cagatattac cattatcgaa
    19441 agagagtggg gaaccgtatt tgaaccagaa gaaattgaag cagagttgaa aaaaggcggc
    19501 tataaagcag ttgctattat tcacggcgaa acctcaacct ctatgatgca accgttagaa
    19561 gagatcggca aaatctgtaa acaatatgat gcaatgttaa ttgtagatac cgttgcaacc
    19621 ttaggcggtg tagatattcg tgtggatgaa tggggcattg atgcttgtat cggcggtaca
    19681 caaaaatgta tttccgcccc atcaggcaca gctttaatca cttataacaa acggattgaa
    19741 gagattattg caaaacgtaa acgtgtggaa aaaggcattc gtgcagagtc tgatgtagat
    19801 ggcacattac cgccaattcc aagtaactac ttagacttgg cacagctaca agattactgg
    19861 agcccacgcc gtttaaatca ccacacagaa accacttctg cacaatatgg tgtacacgaa
    19921 gcgttacgca ttattttaca agaaggctta gaagctcgtt ttgctcgcca tattttaaac
    19981 gacaaagcat tatgtgcagg tttagaagca atgggtttga aaatttttgg cgatcgcaaa
    20041 cataaagccc ccgttgtaac ggcattccac attccagaag gtatgagtgg cccagcattg
    20101 cgtagtgata ttttaaacca cttcggtatt gaattagcca cctcattcgg ccccttagat
    20161 ggaaaagtaa tccgtatcgg taatatgggt ttctcaagcc aaaaacgtaa cgtactttta
    20221 accttaggtg cgttagaagc cgtactttta agccataaag taaaagtgcc ttcaggcgat
    20281 gcggttgcag ctgccttggc agtctataaa gaggctgata aataaccacc ttcctaaatt
    20341 tacaatacaa
//
LOCUS       DANLZD010000029        20169 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.029, whole genome shotgun sequence.
ACCESSION   DANLZD010000029 DANLZD010000000
VERSION     DANLZD010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20169)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20169)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20169
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.029"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..522
                     /locus_tag="PXE26_000809"
     CDS             <1..522
                     /locus_tag="PXE26_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2572 family protein"
                     /protein_id="HDL5593415.1"
                     /translation="LYPQDKTQICQKFQKEQISQADLSDKQFRFLQYQFACQFHSLFK
                     DKKPTKEKYIHFTHLADYLDLSNVPNQEIYTIHSLAELPSSSEREPKIVLAKNAINEN
                     LPQEFYGIVITDYLFDITGKKMYGTLYSSYDNAREERNLTFKKEVLAELEARYSAWRY
                     LPYSEHLMGAVDD"
     gene            515..808
                     /locus_tag="PXE26_000810"
     CDS             515..808
                     /locus_tag="PXE26_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5374 domain-containing protein"
                     /protein_id="HDL5593416.1"
                     /translation="MIKYKAETALSLLVAITLFAIVVLSFSQWQSAQNHRLNQHFQQQ
                     QAVMILENQLALKLAGLDCESSITQNQIRYQIQCSGNRLTIRFPLGKIELNND"
     gene            857..4147
                     /gene="recC"
                     /locus_tag="PXE26_000811"
     CDS             857..4147
                     /gene="recC"
                     /locus_tag="PXE26_000811"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HDL5593417.1"
                     /translation="MFTLYQSNQISSLAEMLVKIQQVNPLEDPFEPETILIQSQGMAQ
                     WLQMQIAELNGVMGNCDFLYPTTFLWQQYRLLFPELPKENIFERSSLVWRIMRLLPSC
                     LTLSEFAPLKRYLGDQPNKEQYQLKLYQLSAKIAELFDQYLVYRPHWLVSWEEGNLQA
                     IENEIKIATAAKPIDFDLIRADMKWQSHLWQQIVSDLQSESDEQVFTTSHRAYLQQNY
                     FAKLDDLTETEKAKLPKRIFIFGISSFSPLQLAVFKKLSEHCDIHLFFFNPSEKYWGD
                     SVEEKVWQKLALSHKISQDDLDNLLAEQRNKLLNLWGKQGRDFLAQLIEFEPNTMDVF
                     VEPEENSNLNKLKKQIFSLENDATITDLTADNSLQIHSCHSPMREVEVLHNQLLNLFE
                     QDSTLLPKDIIVMSPDINKYAPYIDAVFSRYNTGNRDPRYIPFSLSDQAFTQVDPIIH
                     SFLQLLAMKESPFNAEELFDLLEVNAIQTRFGFSTEDIHTLRVWVRNAGVRSGVEIEQ
                     PHWQNYNSWENGLNRLLLGSSLKEEQGIWENTLAFGDSYGLNAELVGRLASFIEALLA
                     WVNFLQTPQPLAAWQQAIKNLTADLYQENAENAASILLLNNVNDQIIEQISATHFSDD
                     LQIEVLALLFEQQLSQHSQQLNFLVGRVNFATLLPMRAIPFKVICLLGMNEADFPRQQ
                     QINSFDLMQYAPKKGDRAKRDDDRYLFLEALLSAQQMFYISYIGQSQKDGKEMLPSIL
                     VSQLLDAMNEALTPECKQQLSDEVEVLVRKQPLSVFSKKNFTHPRDHAYNAEWIIKPT
                     VAVQDFLSEPLTNESVASLELDELISFVQNPIRFFFLKVLGISFNTYDDTIDESEIFE
                     MSGLDNYRILNELLTINLAQQQRFFAEEQLKGNLPASYFAQIATQDLIGKITEMQAAL
                     SHYLASESRILSVNREVELERQTLTLNGNIANLYQNEVVLWRVGHLRDKDKIQTWIYH
                     LLLCAYFPEKTVKFYYREGEQVGVLSFETVSQIEALSQLSIYLNAYLDGLSQAQLVIY
                     DRIEEYLKGDGTNSEQVLIDLAEKDERDGSYLHRLLAQTKELDSQAIHQRTQSWFSLM
                     NQKIAKGD"
     gene            4283..7228
                     /gene="ptrA"
                     /locus_tag="PXE26_000812"
     CDS             4283..7228
                     /gene="ptrA"
                     /locus_tag="PXE26_000812"
                     /EC_number="3.4.24.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin"
                     /protein_id="HDL5593418.1"
                     /translation="MKLSFLTQFVAAAFALNVMTYPAFAEVAKNSEKTTASQPQSQLG
                     FELIKQSINKSPNDKAIYQGIKLDNGMEVLLISDSQANKSLMSAIIPIGSMDDPISQQ
                     GLAHYLEHMILMGSKNYPETNSLDGFLTKNGGMNNASTASHRTAYYLQVNNEAFSEAV
                     TRLADTLAFPLLLETNAKKEVNAVNAEMVRAKSHDGHLLHSVNLATANPAHPATKFAV
                     GNKETLSDKPDSKLQTELEQFYKQHYSANLFKVVLYSNQSIEQMAKLAANTLGKMENK
                     HFSIPQTAEPRYRDEDKSVFIQYKPVKSNKMLVIGFDFPNDEMQFKHKTGKYIAYMLN
                     NNTDGTLSDYLIKQGLSDGGIEAVSSANIGRDRGSFDIYIELTDKGLSEQDQIISLVF
                     QQIEKIKQEGIQESYFSEVKESLKQDFQHLQVEKNMDFVEFIADQMLHFPLEHVIDQP
                     YLTETMDNEAIKAKLAAMNIDNARIMLVSDTAKTDKKTPYFEAGYSVAKITQEQKQKW
                     LDFSKNPQLNLPELNPYFTTDFTLNKVETGLTKPKLINDQAGNLIYTMPSVYFTNEPK
                     AKIGVGFNIRPRKDDLKSLTAASILGYMNNLAQTKLDFQSSVAGMNLSLAPAANGLAL
                     SAEGYTQNLAKLMLDSVKQFSRFEFNEDVLAQAKQRLHQELDRNEKENSLNQANAALS
                     RFASYPYFDVPKQREMIDSITLADIEQLRQRILQQSSGFKLLSVGNLSAEQVSALAED
                     LQAVIKNQKSANATGQYVDVSTSQRKINVIKSVPNEDNALLMAFMPNGYNELESLTRA
                     KLLRSIISRWYFDDLRTDKQLGYVVYATDNIIGKTAGIQFMVQSPNTTPAGILEHNER
                     FFTQSFERLKNLSDEEFGKYRDSLVEKLQYKPESLAEEFSEFGSDFSRNNPKFDRLQQ
                     VIELTKALTKADIVAFYQKAVIEKQGFVFVSQAVGTKTKAEDVAKFDGFEQIESIEKL
                     QREFEIKDY"
     gene            complement(7277..8923)
                     /locus_tag="PXE26_000813"
     CDS             complement(7277..8923)
                     /locus_tag="PXE26_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5593419.1"
                     /translation="MKFPTLTKISASVLAVLALAACDDKSNENKPTAAAAKPQTEKTF
                     VNCVSRSPTGFSPILMMDGLSYNASSQQIYNRLVEFVPGTTDIEPALAESWEISEDGL
                     TYTFKLRKGVKFHSNKDFTPSRELNADDVVFSFNRQLDKNHPYHTVSNGTYPYFNAMK
                     FPTLLKSVEKVDDSTVRITLTKRDASFLSSLGMDFTSIYSAEYADKMMKAGIPEAVDT
                     TPIGTGPFVFSGYVLDQASRYVANKEYWKGKPDIDRLIFEIVPDATTRYAKLQSGQCD
                     LMDFPNATDIEKMKNDPKINLLSQPGLNIAYVAFNTEKAPFDNVKVRQALNLAVDKKA
                     IIDVVYQGNGFAAKNPLPPTIWGYNDSLADSEYNVEKAKQLLAEAGFPNGFETELWVQ
                     PVVRASNPNPRRMSEIIQADWEKIGVKAKLVTYEWGDYIKRTKAGELTAGTYGWSGDN
                     GDPDNFLSPLFGTPNIGNSNYARFTNPELDALLEKALGSSDKAERTKLYEQAQVILRE
                     QAPWINVAHSINFAPTSKRVEGYKQSPFGYTYLYPVKIVD"
     gene            8999..11089
                     /locus_tag="PXE26_000814"
     CDS             8999..11089
                     /locus_tag="PXE26_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
                     /protein_id="HDL5593420.1"
                     /translation="MIFANQSIELDTVNVIATRDPSKFADTPQKQTKDALLVKQATSV
                     AAALKALPNVDVQGGARAIVQKPSIRGLSDNRIVQVIDGVRQNFDLAHRGSYFVPMSL
                     IQEIEVIKGPSSSLWGSGALGGVVAMRTPNALDLLKNNDKFGAKIRQGYQTANNLSET
                     EASVFAANDRFDALLSGFYNNADNLRSGEGKELNNTGYKQAGGLVKFGWQINDTHRLE
                     LSHRHSQFKQTAPGNNEVENQFTDNDVSAQISAWHAANPGNPSNPVYLAKMLAFYGQL
                     HSSLGSVSYLSDQKITDKSTSLNYYFNPSNPYLSTQVTLYSNSTTENEHRKISGVEDQ
                     TKLSTRGVNIRNHSELSWFSLVYGVDYMLDKVATQRGRNNTDAQYRANPYDAKSKTTG
                     AYLIAHIPLFDEKVVFSPSVRYDRFDTSSETVKYKDSHWSPAAKLTWKATNWLDLTAK
                     YNEAFRAPSMQERFVSGSHFGTTVRGLPINNIFLTNPNLRPETAKNKEVTFNVHFDNV
                     ISQGDKFNFEATYFRNDVKDLINLQVFKANPTSPMEFIPTRSQYQNIANARLSGIELQ
                     TRYQTERLAVFANYGSTKGKDKDSGEALSNIAASKIGFGVNYAVVQDKFTVGANVTRY
                     QAQHRVPKNHGVTYQGYTLTDLHATYAPLKGEWKNLRLDVAVENLFDKKYQPAFSLME
                     GSGRNVKLSAAYSF"
     gene            11160..12848
                     /locus_tag="PXE26_000815"
     CDS             11160..12848
                     /locus_tag="PXE26_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HDL5593421.1"
                     /translation="MKFYPSLIASAVSFAVVLSGQAAVNVPDAGSLQRELDQRQAQQK
                     VKPSGEWFNQAAKAPYTATDGQELTFPLTQVQVFDRTNQEISTPELAPILANYVGKAV
                     SLTDLSNLANEITEFYRSHNYLVAKAILPPQEIEQGKVKILLFKGNVGEVRLQNQSAL
                     SDKFVARLANTTVNGSEFILKDELEKFALTMNDVPGVNTGLELSAGKQAGEANLLIKL
                     QNAERFSGYVSADNQGNKNTGRYRLATGIKANNLIGWGDELKVDLMSSNNANLKNARL
                     DYSSLIDGYATRLGLTANYLDYELGGNFKALQSQGHTHNLGAYVLHPTIRLPDFRLNT
                     KVSFNHQRLTDKQQAVNVAQKRQVNSLTVGINGSWNSLKDGTSYFSLSALFGNLANHT
                     NEQAHYVATDFQPKSRFTVYQYSLSHEQALPKSFAFNLGVNGQFADKTLDSSQKMLLG
                     GLYGVRGHQAGVASVDEGHLVQTELKHYLPLFSKSLLTSSVFYDYGWGKYYKHSGFLA
                     RGVNNSVKLQSIGAGLSLSEAGSYAINASVAKPLGKKIENADKHQFWFSAIKTF"
     gene            12860..15676
                     /locus_tag="PXE26_000816"
     CDS             12860..15676
                     /locus_tag="PXE26_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HDL5593422.1"
                     /translation="MFKRNAISLCILTACSGLAYANTADLPQGERVRVGTATIERTTD
                     KMTVNQSSNKVQIDWNSFDIGKNKEVEFKQPTEMAVAYNRVTGGNASQIQGKLTANGK
                     VYLANPNGVLITKDAEVNVGGLLVTTKDLEKISENGTKDKFSRKLAKEGKILNQGKIT
                     AKGERAFVVLVGDDVANEGEINAKNYYHKETKKVTECYDDSWSLVKQCYDFDKEIVKS
                     TSGEVHLSSGENVTFTLSDRYIDVALDDNTVNSIIKNDGAIIANGDITLTAKGRNQAL
                     DSLIINNGVLQANKVQNKNGTIILSAGETQLHEKSQIKGEKVSFAEASYYGPTEDIKV
                     VSKTGSKVTAPVIDFKGKTVNIQGEFGREDSTDLYNDELQILKTTVNIEVPNTEDIRI
                     ADTDNGGSGSFIQAGALASLLANNGRVNVQGKGFDVSGKLNVNAFKQTDSVLKFINQA
                     GINIHNADIHANGRLFFVTNLPNDTDFQSNIRITDSKINLGNGSMGFGRSSKRWEMHD
                     VVRRADTELRKKFNLDMKNVELNQVDDFVVAGGFQQVNLDNVKARGKTNFYLDSGNSR
                     MFVGEQIYEYGVTDIEKRTQLANLDQRRKRWNSDNYDETDLNWEYNQRFDGFAAKHNH
                     RAPIADTEINIANSDISLDNGFVHLMAEKINLDDSKINITFNQDNSLDESTQINRLGL
                     NGKVSMKNSHINVVGDEKDGISPARHYATMFLVGELLGEKSSIFLKSHQGAVLRTDSN
                     VTIAGKNSKDDLKITAITTGKKMGNEIIGPDGLPTSEDNDANASNTAFAIGYEPNATA
                     IVENASITALAPNGGLAYTGTSKTQIDAKDNATFTFFEKPRAGYDKLLGDIKGNPDKL
                     TPRDFARLYDNIKGIKASSLSEQQLGLADTAKKTSEHTLANSLDVENLVSVTVCDEQN
                     KCEERMLGNKNTNAKVIVGDIKFE"
     gene            15799..15930
                     /locus_tag="PXE26_000817"
                     /pseudo
     CDS             15799..15930
                     /locus_tag="PXE26_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587011.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            complement(15985..16746)
                     /locus_tag="PXE26_000818"
     CDS             complement(15985..16746)
                     /locus_tag="PXE26_000818"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HDL5593423.1"
                     /translation="MKLNQAQIQNALICGQAVVFDEIDSTNEYLLTHHQRLENGTVCL
                     AEKQTAGRGRRGRTWYSPESENLYFSILWHYPMEQAADLPPLSLVVALIIAESLTVQN
                     VKDIQIKWPNDIYYQGKKMGGILLETQANRNGLDVVIGIGLNLGMAKVDENIVTQAWA
                     DLSQYHFNRNELVCRLAYELQKNLKIYPLVGFAHYAERWQSFDLFRHKAVKLITEAEE
                     IHGISQGINEQGELILKQGDNLRYFGIGEISLRAD"
     gene            complement(16758..17789)
                     /gene="murB"
                     /locus_tag="PXE26_000819"
     CDS             complement(16758..17789)
                     /gene="murB"
                     /locus_tag="PXE26_000819"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HDL5593424.1"
                     /translation="MMKHSLTPFHTFHLPAKATQIIEFTTVEQLLSEWQKAFNAQLPI
                     LILGQGSNVLFLEDFDGVVLVNKLKGITHHEDEHFHYLHVQGGENWHELVKWTLAHNI
                     AGIENLALIPGVASSAPIQNIGAYGVEFEQVCDFVEVLNLRSGELFKLSKSECEFGYR
                     ESVFKHQYRDEFAIISVGLKLAKAWKPVLSYGSLAQLNPETVTPIQIFDEVCAVRSSK
                     LPNPDEFGNAGSFFKNPVISNEQFAPIQAKFPAIPHYPQADGTVKLAAGWLIDQTGLK
                     DLQIGGAAVHTQQALVLINKENATGQDVLALAKTVRQRVKEKFGVEIQPEVRFIGKNG
                     EVDSEKITR"
     gene            complement(17893..18567)
                     /gene="crp"
                     /locus_tag="PXE26_000820"
     CDS             complement(17893..18567)
                     /gene="crp"
                     /locus_tag="PXE26_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010787261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cAMP-activated global transcriptional regulator
                     CRP"
                     /protein_id="HDL5593425.1"
                     /translation="MQDMTLSTAPLENVTPPPSIHDPAVEWFLTHCHIHRYPAKYTLI
                     HAGEDAESLFYIVNGSVSVYIKDDETKEMLLTNLGTGEFVGELSLFEEKVQQRTAYVR
                     TKGPCEIAEISYKKFKQLVHLNPDILMYLSAQMARRLRQTSRQVGNLAFLDVAGRIAQ
                     TLLNLAKMPDAMTHPEGMQIKITRQEIGQMVGCSRETVGRIIKMLEDEGLISAHGKTI
                     VVYGAR"
     gene            complement(18629..18847)
                     /locus_tag="PXE26_000821"
     CDS             complement(18629..18847)
                     /locus_tag="PXE26_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheU family protein"
                     /protein_id="HDL5593426.1"
                     /translation="MIIPWQELEESTLHNILDSFILREGTDYGERELSLAEKRERLLT
                     QLKADKVVIVWSELHESLDIKDKKSFLG"
     gene            complement(18850..19455)
                     /gene="slmA"
                     /locus_tag="PXE26_000822"
     CDS             complement(18850..19455)
                     /gene="slmA"
                     /locus_tag="PXE26_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion factor SlmA"
                     /protein_id="HDL5593427.1"
                     /translation="MTEPKIKMPKKSVVERRQQVLEVLISLLNSEEGMQRITTERLAA
                     AVGVSEGALYRYFPSKTKMFEALIEKIEQTLTSYIHANKRQDSSANSVRAILYVILEF
                     ARKNPGVTRILTGHALMFEEELLKARVAKFFDNLELQFANILQLSKLRERKSFEDERA
                     LAGYLVNFCEGQFLRLVRSNFSYNQHQHFEKQWAFIKPLFD"
     gene            complement(19467..19922)
                     /gene="dut"
                     /locus_tag="PXE26_000823"
     CDS             complement(19467..19922)
                     /gene="dut"
                     /locus_tag="PXE26_000823"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HDL5593428.1"
                     /translation="MKQIDLKILDSRIGNEFPLPAYATEGSAGLDLRAMLNEPLTVKA
                     GETVLIPTGISIYIADPNLAAVILPRSGLGHKNGIVLGNLVGLIDSDYQGELKVSLWN
                     RSQADFTVNVGDRIAQLVFVPVVQASFNIVQEFEQTDRGEGGFGHSGKQ"
BASE COUNT         6043 a         4190 c         4391 g         5545 t
ORIGIN      
        1 ttatatccac aagataaaac gcaaatatgc caaaaatttc aaaaagagca gatcagccaa
       61 gcggatttat ccgataaaca attcaggttt ttacagtatc aatttgcctg ccaattccat
      121 agtttattta aagataaaaa accgactaaa gagaaatata ttcactttac ccatttggcg
      181 gattatttag atttatcaaa tgtgccaaac caagagattt atactattca ttctttagct
      241 gaattaccta gtagcagtga acgtgagcct aaaattgtgc ttgctaaaaa cgcaattaat
      301 gaaaacttac cgcaagagtt ttacggcatt gtgataaccg actatctgtt tgatattacc
      361 ggcaaaaaaa tgtacggcac gctttattcc tcttatgata atgcccgaga ggagcgaaat
      421 ttaacgttta aaaaagaggt actggcagag cttgaggcga ggtattccgc ttggcgatat
      481 ttgccatatt ccgaacattt gatgggagcg gttgatgatt aaatataaag cagaaacggc
      541 tttgtcgctt ttggttgcca tcacgctatt tgcgattgtg gtgttgagtt tcagccagtg
      601 gcaatcggca caaaaccaca ggctaaatca acatttccaa cagcaacaag cggttatgat
      661 tttagaaaat cagcttgccc tcaaattagc cgggttagat tgtgaatcaa gtattactca
      721 aaatcagatt cgctatcaga ttcaatgctc tggcaatcgc ttaaccattc gctttccgtt
      781 aggcaaaatt gagctgaata atgattgaat cgtccctcgc tttggaggac aataattcaa
      841 ttagcgaggc gttattatgt ttacacttta ccaatccaac caaatttcat cactggcgga
      901 gatgctggtg aaaatccagc aggtaaaccc acttgaagat ccgtttgagc cggaaaccat
      961 tttgatccaa agtcagggaa tggcacagtg gctacaaatg cagattgctg aattaaacgg
     1021 tgtgatgggg aattgcgatt ttctctaccc tactacattt ttatggcaac agtatcggct
     1081 gttgttcccg gagctgccga aagagaatat ttttgagcgt agttcgttgg tttggcggat
     1141 tatgcggtta ttgccgagtt gcttgacact atcggagttt gctccgctaa agcgttattt
     1201 aggtgatcaa cctaataaag aacagtatca gcttaagctc tatcaacttt ctgccaaaat
     1261 tgccgaattg ttcgaccaat atttggtgta tcgcccccat tggctggtta gctgggaaga
     1321 gggcaactta caagcgatcg aaaatgagat aaaaattgca actgccgcta agccgattga
     1381 ttttgactta attcgagccg atatgaaatg gcaaagccat ttatggcaac agattgtatc
     1441 tgatctgcaa tcggaatctg atgagcaggt ttttactacc tcccaccgtg cctatttgca
     1501 acaaaattac ttcgctaagt tagatgacct tactgaaacg gaaaaagcca aattgccaaa
     1561 acgcattttc atttttggga tttcgtcctt ctcgccatta cagttagcgg tgtttaagaa
     1621 actcagcgag cattgcgata ttcacctgtt cttttttaac ccaagcgaaa aatattgggg
     1681 cgacagtgtg gaagaaaaag tgtggcaaaa attggcgtta agccacaaga tttcgcaaga
     1741 cgatctggat aacttattgg cggagcaaag aaataaacta ctgaatcttt ggggcaaaca
     1801 agggcgggat ttcttagctc aattaatcga atttgagccg aataccatgg atgtctttgt
     1861 cgaaccagag gaaaacagca acctcaataa actcaaaaaa cagattttca gcttagaaaa
     1921 tgacgccact attaccgatt taaccgccga taattcactc caaattcatt cgtgccacag
     1981 cccaatgcgg gaagtggaag tgttgcataa ccagctcctg aatttgtttg agcaagatag
     2041 cactttgctg ccgaaagata ttattgtgat gtcgccggat attaataaat acgctcctta
     2101 cattgatgcg gtgttttctc gctacaatac gggtaatcgg gatcctcgct atattccttt
     2161 ttcattatcc gaccaagcat ttacgcaggt tgatccgatt atccacagtt tcctgcaact
     2221 gctggcaatg aaagaaagcc cgtttaatgc cgaagaactg tttgatttac tggaagtgaa
     2281 tgcgatccaa acccgttttg gctttagtac ggaagatatt cataccctgc gggtttgggt
     2341 gagaaatgcc ggcgtacgtt cgggtgtaga aatcgagcaa cctcactggc aaaactacaa
     2401 ttcgtgggaa aacgggctaa accgtttatt gcttggctca agcctgaaag aagagcaggg
     2461 gatttgggaa aacacccttg cctttgggga tagctatggc ttaaatgccg agctggtggg
     2521 gcgacttgcc tcttttattg aggctttatt agcgtgggta aactttctgc aaacgccaca
     2581 gccgttggca gcgtggcagc aggcaataaa aaatttgact gctgatctgt atcaagaaaa
     2641 tgccgaaaat gctgcatcaa ttttattgtt gaataatgtg aatgatcaga ttatcgagca
     2701 aatttccgca acccattttt cagacgatct gcaaattgag gttttagcct tattgtttga
     2761 gcagcagctc agccaacatt cacagcagct taatttcttg gtcggacggg tgaattttgc
     2821 caccttgctt ccgatgcggg cgattccgtt taaggtaatt tgcttgctgg gtatgaatga
     2881 ggcagatttc cctcgccaac aacaaatcaa tagctttgat ttaatgcagt acgccccgaa
     2941 aaagggagac cgtgccaaac gtgatgatga ccgctacttg ttcttagaag ccttactttc
     3001 cgctcagcaa atgttttaca tcagctatat cgggcagtcg caaaaagacg gcaaagagat
     3061 gctaccgtcg attttggttt cccaactgtt agatgcaatg aatgaagctt taacgcctga
     3121 atgcaagcaa caattaagcg atgaagtgga agttttggtc agaaaacaac ctttaagtgt
     3181 gtttagcaaa aagaatttta cccacccacg agatcacgct tataacgcag agtggattat
     3241 caagccgact gttgccgtac aagattttct tagtgagcct ttaaccaatg aaagcgtggc
     3301 ttcgctagaa cttgatgaat taatctcttt tgtacaaaac ccgattaggt ttttctttct
     3361 aaaagtgttg gggatttcgt ttaacactta tgatgacacc attgatgaaa gcgaaatttt
     3421 tgagatgtcg gggctggata actaccggat tttaaacgaa ttattaacga taaatttagc
     3481 acaacagcaa cgtttttttg ccgaagagca actcaaaggc aatttacctg cttcttattt
     3541 tgctcaaatt gccacacaag atttgatcgg caaaattacc gaaatgcaag cggcgttaag
     3601 ccactattta gccagcgaaa gccgtatttt gagtgttaat cgggaggttg agctggaacg
     3661 ccaaaccctc accctaaacg gcaatattgc caacctatat cagaatgaag tggtgctatg
     3721 gcgagtaggg catttacgag ataaagacaa gattcagact tggatctacc atttattatt
     3781 gtgtgcctat ttccctgaaa aaacggtgaa attctattac cgagagggtg agcaagttgg
     3841 tgtgttgagc tttgaaaccg tctcgcagat agaggcatta tcgcaattaa gcatttattt
     3901 gaatgcttat ttggacggat tatcgcaagc ccagttagtg atctacgacc gaattgagga
     3961 atatctcaaa ggtgatggca caaacagcga acaagttctt atcgatttag cagagaaaga
     4021 tgagcgagac ggcagctatc tccatcggct tctcgctcaa actaaagagc tggattctca
     4081 agcgattcac caacgtactc aaagctggtt tagcttaatg aatcagaaaa tagcgaaagg
     4141 cgattaacta caagcggtcg tttttggctg aaaatttgca aaatgagaag gcgaataata
     4201 attcgcctac ctataaaaat agaatttttt ccgtatttta ctgtcaattt attactacaa
     4261 tgctaatttc aaaaggagat gtatgaaatt atcttttctt acccaattcg ttgcagcggc
     4321 ttttgccctc aatgtgatga cttaccctgc atttgcggaa gttgcaaaaa attctgaaaa
     4381 aacgaccgct agtcaacccc aatcccaact cggttttgag ctgattaaac agagcattaa
     4441 caaaagcccg aatgataaag cgatttatca aggtattaaa cttgataatg gaatggaagt
     4501 gctactgatt tccgacagtc aagcgaataa atcgttgatg tctgccatta ttccgattgg
     4561 ctcaatggat gacccgattt ctcagcaagg tttagcccac tatcttgagc atatgatctt
     4621 gatgggctcg aaaaactatc cggaaaccaa cagcttagac ggttttttaa ccaaaaatgg
     4681 cggtatgaat aatgcctcga ctgcttctca ccgcacggcg tattatctac aagtcaataa
     4741 cgaagccttt agcgaagcgg taacacgact ggcggatacg ttagctttcc cgttattgct
     4801 ggaaaccaac gccaagaaag aggttaatgc ggtcaatgcg gagatggtgc gagctaaatc
     4861 gcacgatggg catttattgc acagtgttaa tttagccacc gcaaacccgg ctcatcctgc
     4921 taccaaattt gcggtaggca ataaagagac gttatctgac aagccggata gcaaattaca
     4981 aaccgagttg gagcaatttt ataaacagca ttattctgcg aatctgttta aagtggtgct
     5041 ttattccaat caatcgattg agcagatggc aaaattggca gccaacactt taggcaaaat
     5101 ggaaaacaaa catttcagca taccgcaaac cgctgagcca cgttatcgtg atgaggacaa
     5161 atcggtattt attcaatata agccggtgaa atccaacaaa atgttagtca ttggctttga
     5221 ttttccgaat gacgaaatgc agtttaagca caaaaccggt aaatatattg cttatatgtt
     5281 aaacaataat actgacggca cgctttcgga ttacttgatt aaacaggggt tgtctgacgg
     5341 cggtattgag gcggttagca gtgccaatat cgggcgggat cgaggctcgt ttgacatcta
     5401 tattgaactg acagacaaag gtttgagcga gcaagatcaa attatttcat tggttttcca
     5461 acaaattgag aagatcaaac aagaaggcat tcaagagagc tattttagcg aagtgaaaga
     5521 gagcctgaag caggatttcc aacatttgca agtggaaaaa aatatggatt tcgtggaatt
     5581 tattgccgat caaatgctcc atttcccgtt agaacacgtt atcgatcagc cttatctgac
     5641 cgaaacaatg gataacgagg caattaaagc aaaattggcg gcaatgaata ttgataatgc
     5701 ccgcattatg ttagtcagcg atactgccaa aaccgacaag aaaacccctt attttgaagc
     5761 aggttattcg gtggcaaaaa tcacgcaaga acaaaagcaa aaatggctgg atttcagtaa
     5821 aaatccacag ctcaatttgc ctgaattgaa cccgtatttc actaccgatt ttaccttaaa
     5881 caaggtcgaa accggcttaa ctaaaccgaa attgattaac gaccaagcgg ggaatttaat
     5941 ctatacaatg ccgagcgtgt attttaccaa tgaaccgaag gctaaaatcg gcgttggctt
     6001 taatattcgc ccgagaaaag atgacttaaa gagcctgacc gcagcgtcta ttttgggtta
     6061 tatgaacaat ttagcccaaa ccaagttaga ttttcagtct tcggtggcgg gtatgaattt
     6121 aagtttagct ccggcggcaa acggtttagc cttaagtgca gagggttata cccaaaatct
     6181 ggctaaatta atgctagaca gcgtaaaaca gttcagccgc tttgagttta acgaagacgt
     6241 gttggcacag gctaaacaac gtttgcacca agagctggat cgtaacgaaa aagaaaacag
     6301 ccttaatcaa gctaatgcag cattaagccg ttttgcctct tacccttatt ttgatgtgcc
     6361 gaaacagcgt gagatgattg atagcattac ccttgcggat attgagcaac tacgccagcg
     6421 aattttgcag cagagcagcg gctttaagtt gttatcggtg gggaatttgt cggctgagca
     6481 ggtttctgct ctggcagagg atttacaagc ggtcataaaa aaccaaaaat ctgcaaatgc
     6541 taccggacag tatgtggatg tgagtaccag tcagcgtaag attaatgtga ttaaaagcgt
     6601 gccgaatgaa gataatgcgt tgctaatggc atttatgccg aacggctata acgagctgga
     6661 aagccttact cgagccaaat tgctcagaag cattatttcc cgttggtatt ttgatgattt
     6721 gcgtactgat aagcaactag gctatgtggt ttatgcgaca gataatatca tcgggaaaac
     6781 cgccggtatc cagtttatgg tacaaagccc gaataccaca ccggcaggga ttttagagca
     6841 taacgaacgt ttctttacac aaagtttcga acgtttaaaa aatctatctg atgaggaatt
     6901 tggaaaatat cgtgatagcc tagtggaaaa actgcaatat aaaccggagt ctttagcgga
     6961 agagttttct gagttcggtt cagactttag cagaaataac ccgaaatttg accgcttgca
     7021 acaggtgatc gaattaacca aagcactcac caaagcagat attgtggcat tttaccaaaa
     7081 agctgtgatt gaaaagcaag gcttcgtgtt tgtcagccaa gctgtcggca ccaaaaccaa
     7141 agctgaagac gttgcgaaat ttgacggttt tgaacagatc gaaagcattg aaaagctaca
     7201 acgagagttt gagattaagg attattagag agttattaga gagagttagg ggcgaaaaat
     7261 tttcgcccct cattttttaa tccacaattt tcaccggata taagtaagta tatccgaacg
     7321 gactttgttt gtagccttca acacgtttgc tggttggggc aaagttaatt gagtgagcca
     7381 cgttaatcca cggagcttgc tctcttaaga taacctgtgc ctgctcgtat aacttagtac
     7441 gttctgcttt atcagatgag cctaatgctt tttctaataa cgcatctaac tcagggttag
     7501 taaagcgagc atagttactg ttgccgatat ttggcgtgcc gaatagtggc gataagaagt
     7561 tatccggatc gccgttatcg cccgaccaac cgtaagttcc ggcggttaat tcaccggctt
     7621 tggtacgctt gatgtaatca ccccattcat aggtgactaa ttttgctttt acgccgattt
     7681 tttcccagtc ggcttgaata atttcagaca tacggcgtgg gttcgggtta gaagcacgca
     7741 ccacaggctg cacccataat tcggtttcaa aaccgttcgg gaagcctgct tcagctaata
     7801 gttgcttcgc tttttccacg ttatattctg aatccgctaa gctgtcgtta tagccccaaa
     7861 tggttggcgg aagtgggttt ttcgccgcaa aaccgttacc ttggtaaact acatcaataa
     7921 tcgctttttt atccactgct aagtttaacg cttggcgaac tttcacgtta tcaaacggag
     7981 ctttttcggt attgaatgcc acataagcaa tgttcaaacc cggttgagaa agtaaattga
     8041 ttttcggatc atttttcatt ttctcaatgt cggttgcatt tgggaagtcc attaaatcac
     8101 attgaccgga ttgtaatttc gcataacggg ttgttgcatc cggcacgatc tcaaaaatca
     8161 aacggtcaat gtcaggctta cctttccaat actctttgtt tgctacataa cgactggctt
     8221 ggtctagcac ataaccgcta aacacaaacg gacctgtgcc gattggcgtg gtatctaccg
     8281 cttcaggtat gccggctttc atcattttat ccgcatattc cgccgaataa atggaggtga
     8341 aatccatacc aaggctggat aagaatgacg catcacgttt ggttaaggta atacgaacgg
     8401 tgctgtcgtc cactttttcc accgatttca ataatgtcgg gaatttcatt gcgttgaaat
     8461 acggataagt gccgttagag acggtgtgat acggatgatt tttatctaac tgacggttaa
     8521 atgaaaatac tacatcgtcc gcattcaatt cacggcttgg agtgaagtct ttgtttgaat
     8581 ggaatttcac gcctttgcgt aatttaaagg tgtaagttaa gccgtcttcg ctgatttccc
     8641 agctttctgc caatgccggt tcaatatcgg ttgtacccgg cacaaattcc accaagcggt
     8701 tgtaaatttg ttgcgagctg gcgttataag ataaaccgtc catcattaaa atcgggctaa
     8761 aaccggttgg cgaacggcta acgcagttta caaaggtttt ctcggtttgc ggttttgctg
     8821 ctgccgcagt aggtttattt tcgttgcttt tatcatcgca agccgctaga gctaataccg
     8881 ctaaaacgct tgcactaatt ttggttaacg ttggaaattt catattattc tccgcttaat
     8941 cttaggatta acttacgaag attacctttt ccacaatgag gagtaaagaa caaaaagcat
     9001 tatttttgca aatcaatcca tagaattaga taccgtcaac gtcattgcca cccgtgatcc
     9061 aagtaaattt gccgatacgc cacaaaaaca aactaaagat gcacttttgg taaaacaagc
     9121 gacgagtgtg gcggcggcat taaaagcgtt gccgaatgtg gatgtgcaag gaggggcccg
     9181 tgcgattgtg cagaagccgt ctattcgtgg gttgagcgat aatcgtattg tgcaggtgat
     9241 tgacggagtg cgtcagaatt ttgatttggc tcaccgtggt tcttattttg tgccgatgtc
     9301 attgattcaa gaaattgaag taatcaaagg tccaagcagc tcgttgtggg ggagcggtgc
     9361 cttaggtggg gtggtggcaa tgcgcacacc gaatgcgttg gatttattga aaaataatga
     9421 caaattcggg gcaaaaatcc gtcaaggtta tcaaacggcg aataatcttt ccgaaaccga
     9481 agcctcggtg tttgcagcaa atgatcggtt tgatgccctg ctgagtggtt tctacaataa
     9541 tgctgacaat ttgcgtagcg gtgaaggcaa ggaactgaat aacacgggct ataagcaagc
     9601 cggcggttta gtaaaattcg gctggcaaat taacgatact catcgtttgg aattatccca
     9661 tcgtcatagc caatttaaac aaactgcacc gggtaataac gaggtagaaa atcaatttac
     9721 cgataatgat gttagtgcac aaattagtgc ttggcatgcg gctaatcctg gaaatccaag
     9781 taatccagta tatcttgcga aaatgttagc cttttacggt caattacatt caagtcttgg
     9841 tagtgtgagt tatttaagtg atcaaaaaat taccgataaa agcacctcac ttaactacta
     9901 tttcaaccca agcaatcctt atttgagcac acaagtgaca ttatatagca atagtaccac
     9961 tgaaaacgaa catcgaaaaa taagtggtgt ggaagatcaa actaaactaa gcactcgtgg
    10021 tgtgaatatc cgtaatcatt ccgaattgtc ttggttctcc ttggtgtatg gcgtggatta
    10081 tatgttggat aaagtagcca ctcagcgtgg gagaaataat acggacgcac aataccgtgc
    10141 taatccttat gatgctaaat ctaaaactac aggtgcttat ttaattgcac atattccgct
    10201 gtttgatgaa aaagtggtct tttctccgag cgtgcgttac gaccgtttcg atacttcaag
    10261 tgaaacggtg aaatataaag acagccattg gtctcctgct gcaaaactta cttggaaagc
    10321 gacaaattgg ttggatttaa ccgcgaaata taacgaagct ttcagagccc cttctatgca
    10381 agaacgattt gtgagcgggt ctcattttgg taccacagtg agaggattac ctattaataa
    10441 tattttctta actaacccta atttacgccc ggaaacggca aaaaataagg aagtaacctt
    10501 caatgtacat tttgataatg tcatctcgca aggagataaa tttaactttg aagcgactta
    10561 tttccgtaat gatgtgaagg atttgattaa tcttcaagta ttcaaagcaa atcctacaag
    10621 cccaatggaa tttattccca ctcgttccca atatcaaaat attgcgaatg cacgtttgag
    10681 tggtattgaa ttacaaactc gttatcaaac tgaacgtttg gcagtttttg ctaactacgg
    10741 tagtacaaaa ggtaaagata aagacagcgg ggaagccttg tcgaacattg ctgcaagcaa
    10801 aatcggcttc ggggtcaatt atgccgtggt gcaagacaaa ttcacggtgg gggcaaacgt
    10861 aacccgttat caagcacaac atcgtgtgcc gaaaaaccac ggcgtgactt accaaggcta
    10921 tacgctgacc gatctacacg ccacttacgc cccattaaaa ggcgaatgga aaaacctgcg
    10981 tttagacgtg gcggttgaaa acctattcga taaaaaatac caaccggcat tcagcttaat
    11041 ggaaggcagc ggtcgtaatg tgaaactcag tgcggcttac agcttctaat gtctttaacg
    11101 gaagacggca caagcggtcg ttttccggtt attttttgca atattaaaag ggagttacta
    11161 tgaaatttta tccgtcgctg atcgcaagtg cggtcagttt tgccgttgtt ttgagtggac
    11221 aagcggcagt gaatgtgccg gatgccggct cgttacagcg tgaattagac caacgtcaag
    11281 ctcaacaaaa agtcaaaccg agtggcgaat ggtttaatca agcggcaaaa gcaccttata
    11341 ccgcaacgga cggtcaagaa ctgacatttc cattaactca ggtacaagtt tttgatcgaa
    11401 ccaaccaaga aatctctacc ccggaattag ccccgatttt ggcaaactat gtgggtaaag
    11461 cggtttcgct gaccgattta agcaacttgg caaatgagat caccgagttt tatcgtagcc
    11521 acaattatct ggtggcaaaa gccattttac cgccacagga aattgaacaa ggtaaggtga
    11581 aaatcctgtt gtttaaaggc aatgtcggtg aagtgcggtt acaaaatcag agtgctttaa
    11641 gcgataaatt tgttgcacgc cttgccaaca ccacagtgaa tggttcggaa tttatcctaa
    11701 aagacgaatt ggaaaaattt gccctcacga tgaatgatgt tcccggggtg aataccggct
    11761 tggagctttc tgccggtaag caagcaggcg aggcgaattt gctgattaag ctccaaaatg
    11821 ccgagcgttt ctcaggctat gtatcggcag ataaccaagg caataaaaat accggacgtt
    11881 accgtttagc cacagggata aaagccaata atctgatagg ttggggcgat gagttgaaag
    11941 tggatttgat gagttccaac aacgctaatt taaaaaatgc gcgtttggat tattcgagct
    12001 tgattgacgg ctacgctacc cgtttgggct taacggcgaa ttatctcgac tacgaattag
    12061 gcggtaactt taaagccctg caatcccaag ggcatactca caatcttggg gcttatgtgt
    12121 tgcacccgac aatccgcttg ccggattttc ggttaaacac caaagtcagc tttaatcatc
    12181 aacgtttaac cgacaaacaa caagcggtca atgtggcaca aaaacgccaa gtaaacagct
    12241 taacggtggg cattaacggg tcgtggaatt cgcttaaaga cggcacaagc tatttctctc
    12301 tgtctgcctt gttcggcaat ttagctaacc acaccaacga gcaagcgcat tatgtggcaa
    12361 cagattttca gcccaaatcc cgttttacgg tctatcaata cagcctgtct cacgaacaag
    12421 cgctgccaaa atcctttgcc ttcaaccttg gcgtgaacgg gcagtttgcg gataaaaccc
    12481 tcgacagctc acaaaaaatg ttactgggcg gtttatacgg cgtgcgtggt catcaagccg
    12541 gtgtcgcttc ggtggatgag gggcatttag tgcaaaccga actcaagcat tatttaccgc
    12601 tcttttccaa aagcctgctg accagctcgg tcttctatga ttatggttgg ggaaaatact
    12661 ataaacacag cggatttttg gcgcgtggtg taaacaatag cgtgaaatta cagagtatcg
    12721 gagcagggct ttcgctctct gaagcaggca gttatgccat taacgccagt gttgccaaac
    12781 cgctgggtaa aaaaatcgag aatgcagata aacaccaatt ctggttctcc gccatcaaaa
    12841 ccttctaagg agacaaacta tgtttaaacg taatgcaatt tctctctgca ttttgaccgc
    12901 ttgcagcggt ttagcctatg ccaatacagc agatttgccg caaggtgaaa gggtgcgtgt
    12961 cgggacggca acgattgagc gcacaaccga taaaatgacc gtgaatcaat ccagcaataa
    13021 agtacaaatt gattggaaca gctttgatat tggtaagaat aaagaagtgg aattcaaaca
    13081 gccgacagag atggcggtgg catataaccg tgttaccggc ggaaacgcca gtcaaattca
    13141 aggcaagctg accgcaaacg gcaaagtgta tttagccaac ccgaacggtg tactcatcac
    13201 caaagatgcg gaagtgaatg tgggcggttt gttagtgacc acaaaagatt tagaaaaaat
    13261 cagcgaaaac ggcacaaaag ataaattcag tcgcaaatta gcgaaagaag gcaaaattct
    13321 taaccaaggt aaaattacgg ccaaaggcga gcgggctttt gtggtattgg tgggcgacga
    13381 tgtggctaat gaaggggaaa ttaacgccaa aaattattac cacaaagaaa cgaaaaaagt
    13441 caccgaatgt tatgacgatt cttggagctt ggtaaaacaa tgctacgatt ttgataaaga
    13501 aatcgtgaaa agtaccagtg gagaagtgca tttatcctcc ggagaaaatg tcacctttac
    13561 tttaagcgac cgctatattg atgtggcgtt agacgataat acggtcaata gcattatcaa
    13621 aaatgacggg gcaatcatcg ccaatggtga cattaccctc actgccaaag ggcgaaatca
    13681 agccttagac agcttaatta tcaataacgg cgtattgcaa gccaataagg tgcaaaataa
    13741 aaacggtacg atcattttat ctgccggtga aacccaatta cacgaaaaaa gccaaattaa
    13801 aggcgagaaa gtgagctttg ccgaagcttc ttattacggt ccgacagaag acattaaagt
    13861 ggtttccaaa accggctcaa aagtgaccgc acctgtgatc gatttcaaag gtaaaaccgt
    13921 gaatattcaa ggggaatttg ggcgtgaaga cagcaccgat ctctataacg atgaactaca
    13981 aatcctcaaa accacggtga atattgaagt cccgaatacg gaagatattc gcattgcaga
    14041 taccgacaac ggaggtagcg gttcctttat acaagcgggt gctttagcct cattacttgc
    14101 aaataacgga cgggttaatg tacagggcaa aggttttgat gtctcaggca agttgaatgt
    14161 gaatgccttt aaacaaacgg attccgtgct gaaatttatc aatcaggcgg gcatcaatat
    14221 ccacaatgcc gatattcacg caaacgggcg tttattcttt gtgacaaact tgccgaatga
    14281 caccgatttc caatcgaata tccgcattac cgacagcaaa atcaacttag gcaacggctc
    14341 aatgggcttt ggtcgcagta gcaaacgttg ggaaatgcac gatgtggttc gacgtgccga
    14401 tacggaactg cgtaaaaaat tcaatctgga tatgaaaaac gtggaattaa accaagtgga
    14461 tgattttgtg gtagcgggcg gtttccaaca agttaatttg gataacgtga aagcccgtgg
    14521 caaaaccaac ttctatctgg attccggcaa ctcccgcatg tttgtcggtg agcagattta
    14581 tgaatatggc gtaaccgata ttgaaaaacg cacccaattg gcgaatttag accagcgtag
    14641 aaaacgttgg aattcggata actatgatga gaccgatctc aactgggaat acaaccaacg
    14701 ctttgacggc tttgcagcaa aacacaatca ccgcgcgccg attgccgata cggaaatcaa
    14761 tattgccaat agtgatatca gcttagataa cggttttgtg catttaatgg cagaaaaaat
    14821 caatctggac gacagcaaaa tcaatatcac cttcaaccaa gacaacagct tggatgaaag
    14881 tacccaaatc aaccgcttag gactaaacgg caaagtgtcg atgaaaaaca gccatattaa
    14941 cgtagtgggc gatgaaaaag acggtatctc accggctcgc cattatgcca cgatgttctt
    15001 agtgggggag ctgcttggtg aaaagagttc tattttcctc aaatcccacc aaggtgcagt
    15061 attgagaacc gacagcaatg ttacaattgc cggtaaaaac agcaaagacg acctcaaaat
    15121 taccgccatt accaccggta aaaaaatggg caatgaaatc atcggaccgg acggcttgcc
    15181 aacctcggaa gataacgatg ccaacgccag caacaccgcc tttgccatcg gctatgaacc
    15241 taacgctacg gctatcgtcg aaaatgcaag cattaccgca ttagcaccaa acggcggctt
    15301 ggcatacacc ggcacgtcta aaacccaaat tgacgcgaag gataatgcta cctttacctt
    15361 ctttgaaaaa cctcgagccg gctatgacaa attgcttggc gacatcaaag gtaaccccga
    15421 taaattaacc ccacgcgatt tcgcccgttt atacgacaac attaaaggca tcaaagccag
    15481 cagcctatcc gaacaacagc ttggcctagc agacaccgcg aagaaaacca gcgaacacac
    15541 cttagcaaac agcctagacg tagaaaattt ggtttcagtg acagtgtgtg atgagcagaa
    15601 taagtgtgag gagcgtatgt taggtaacaa aaataccaat gctaaagtta ttgtcggaga
    15661 tatcaaattt gagtagcgtt gaagaaagtg gtagaagctc agacttgatc tgataaagca
    15721 ctataaaaag tgagagtttc ccgtttagaa tatgagtgtc aaaattcaat ctaaacaaaa
    15781 aggaaactct catgttttat tacttacaat cccctcatta aacacaagac cggtttatta
    15841 aatttagcag aagaaccggg caatatctct caagcctgca atgtggtggg tatgagccta
    15901 gatacattct attgctatca acaagcggtt atttttggca actaatttgc aaaaaaacaa
    15961 taaaatccga ccgcttgtag agggttaatc cgcccttagt gaaatttcac cgatgccgaa
    16021 atagcggagg ttgtcgccct gttttagaat gagttcgccc tgctcgttaa tgccttgcga
    16081 aatgccgtgg atttcttcgg cttcggtaat gagcttaacc gctttatggc ggaaaaggtc
    16141 gaaactttgc cagcgttcgg cataatgagc gaagccgaca agcggataaa ttttgagatt
    16201 tttttgcaat tcataggcta aacggcaaac caattcgttg cggttgaaat gatattgcga
    16261 taaatctgcc cacgcttgcg tcacaatatt ttcatccact tttgccattc ctaggttcag
    16321 cccaatgccg ataaccacat ctaaaccatt gcgattggct tgggtttcca acaaaatgcc
    16381 ccccattttt ttgccttggt aataaatgtc attcggccat ttaatttgaa tatcttttac
    16441 attttgaaca gtaaggcttt ccgcaatgat caaggctacc actaaactta agggcggtaa
    16501 atctgccgcc tgctccatcg ggtaatgcca taaaatcgag aaatagagat tttcactctc
    16561 gggcgaatac caagttcgac ctcgtctgcc acgtccggca gtttgttttt cagcgaggca
    16621 aaccgtgccg ttttccaaac gttggtgatg agtgagcaaa tattcattgg ttgaatcaat
    16681 ttcatcgaac acaacggctt gcccgcaaat taaagcattt tggatttgag cttggttaag
    16741 tttcattatt tccccactta gcgagtgatt ttttcgctat cgacctcacc gtttttaccg
    16801 ataaaacgca cttcaggctg aatttctacc ccaaattttt ctttcactct ctggcgaacg
    16861 gttttggcta gagccaagac atcttgccct gttgcatttt ctttattaat cagcactaag
    16921 gcttgctggg tatgtaccgc cgctccgcca atttgtaagt ctttcagccc ggtttggtca
    16981 attaaccaac ctgcggctaa ttttaccgtt ccatcagctt gagggtagtg aggaatggct
    17041 gggaatttgg cttgtattgg tgcaaattgt tcgtttgaaa tcaccggatt tttaaaaaag
    17101 ctgccggcat tgccaaattc gtcagggttt ggcaatttgg aggagcgaac cgcacagact
    17161 tcatcaaaaa tctgtattgg cgtaacggtt tccggattga gttgggctaa tgatccgtaa
    17221 cttagcaccg gtttccacgc tttggctaac tttaagccta ccgagataat cgcaaattca
    17281 tcacggtatt ggtgtttaaa cacactttca cgatagccaa attcgcactc ggatttggat
    17341 agcttaaaga gttctccgga acgtaaattt aacacttcca cgaaatcaca tacctgttca
    17401 aattcaaccc cataagctcc tatattttga atgggagcag agctggcgac acccggaatt
    17461 aacgccagat tttcaatgcc ggcaatattg tgtgccaacg tccatttaac caattcgtgc
    17521 cagttttccc caccttgaac gtgcaaatag tggaaatgtt cgtcttcgtg gtgcgtaatc
    17581 cctttgagtt tatttactaa caccacaccg tcaaaatcct ctaaaaacaa aacgttagag
    17641 ccttgcccga gaatcaagat tggcagttga gcgttaaagg ctttttgcca ttcgctcaat
    17701 agctgttcga ctgtggtaaa ttcaataatt tgggtcgctt ttgcaggcaa atggaaagtg
    17761 tgaaaagggg ttaagctatg tttcatcatc aaattagtta gttaagaagt ggaaataaca
    17821 agcggtgata tttttacaaa attttgcaat taagattttg ggcaggcaca ggatctgccc
    17881 ctacattcag aattaccttg ccccatatac cacaatggtt ttgccgtgag cagaaattaa
    17941 gccttcgtct tccaacattt ttataatgcg tccaacggtt tcacgggaac aaccgaccat
    18001 ttgcccgatt tcttggcggg taattttgat ctgcatacct tccgggtgag tcattgcatc
    18061 cggcatttta gctaagttga gcaaggtttg agcaatgcga ccggcaacgt ctaaaaaggc
    18121 aagattaccg acttggcgtg aagtttgacg taaacggcga gccatttgtg ccgataaata
    18181 cattaaaata tcggggttta aatggactag ttgtttgaat tttttatagg aaatttccgc
    18241 aatttcacaa ggacctttag tgcggacgta agcggtacgt tgttggactt tttcttcaaa
    18301 taaacttaat tcaccgacaa actcacctgt gcctaagtta gttaagagca tctctttggt
    18361 ttcatcatct ttgatgtaaa ccgacactga gccattcacg atgtagaaaa gtgattctgc
    18421 atcttcaccg gcgtgaatga gtgtatattt cgccggataa cgatggatat gacaatgggt
    18481 taaaaaccac tccaccgcag ggtcgtgaat agagggcgga ggagttacat tttccagagg
    18541 agctgttgaa agtgtcatat cttgcatagt atttcctata actcttatac taggttaaat
    18601 ttttagaatt ttaacacgaa attaaaggtt agcctaaaaa agattttttg tctttaatat
    18661 caaggctttc gtgtaattcc gaccaaacaa tcaccacttt atctgcctta agttgtgtga
    18721 gtaatcgttc tcttttttct gccagagaaa gttccctttc cccgtagtct gtgccttctc
    18781 gtaaaatgaa ggaatctaaa atattatgta aggttgattc ttcgagttct tgccaaggta
    18841 taatcataat taatcaaata aaggcttaat aaatgcccac tgtttttcaa aatgttggtg
    18901 ttggttatag ctgaaattag aacgaaccaa gcgtaaaaat tgcccttcgc agaaattcac
    18961 taaataaccg gctaaggctc tttcgtcttc aaagctcttg cgttcacgca gtttactaag
    19021 ttgcaaaata ttggcaaatt gtaactccaa gttatcaaag aattttgcca ctcgagcttt
    19081 gagcaactcc tcttcaaaca tcaaggcgtg tccggtcagg atgcgggtaa cgcccgggtt
    19141 tttgcgagca aattctaaaa tcacatataa aattgctcgc accgaattgg cactgctgtc
    19201 ttggcgttta ttggcgtgaa tatagctggt gagggtctgc tcgattttct cgattaacgc
    19261 ttcaaacatc ttggttttac ttgggaaata gcgatacaac gccccctccg acacccccac
    19321 cgcagcggct aaacgctcgg tagtgatacg ctgcattccc tcttcagaat ttaacaagct
    19381 gattaacact tccaacactt gttggcggcg ttccaccact gattttttcg gcattttaat
    19441 tttaggttct gtcattgcca atcctattat tgcttacctg aatgcccaaa accgccttcg
    19501 ccacggtcgg tctgctcaaa ctcttgcaca atgttaaaac ttgcctgaac caccggcaca
    19561 aagactaact gagcaatacg gtcgcccacg ttcacggtaa aatcagcttg gctacggttc
    19621 caaagcgaca ctttcagctc gccttggtaa tcgctatcga tcaagccgac taagttgcct
    19681 agcacgatcc cgtttttatg ccctaaacct gatcttggta agatcaccgc tgccaaattc
    19741 ggatcggcga tataaattga aatccccgtt gggatcaaca ccgtttcacc cgcttttacc
    19801 gtcagcggct cgttgagcat cgcccgtaga tccaagcctg ccgagccttc ggtcgcatac
    19861 gcaggtaatg gaaattcatt gccgatacgg ctatctaaaa tttttaaatc aatttgtttc
    19921 attctttttc ctttttgtaa atttttaaaa ctatattatt cagttataaa aggttttaat
    19981 tgtatcgttc caagtggaag ttcagtcaat atttcccagc ttgtgttgtg gtaaaatcga
    20041 aataaacttg caacgttttc aacgtagctt gaattaaatt taccttctaa tggctttatt
    20101 cctccagtaa aatgaattat atgtggaata taatttggcg aaattttttg ctgggcaata
    20161 tcatctaat
//
LOCUS       DANLZD010000030        20167 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.030, whole genome shotgun sequence.
ACCESSION   DANLZD010000030 DANLZD010000000
VERSION     DANLZD010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20167)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20167)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20167
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.030"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..537
                     /locus_tag="PXE26_000824"
     CDS             <1..537
                     /locus_tag="PXE26_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593429.1"
                     /translation="FKWKYILPLIAFTALILFLAIVFPENRYVEHALEPVINLLSGTG
                     KVSSSTDNLVKNHLFLPTLNQFISGDGLYYTETGGYYGGSDSGYIRQVLYGGVSYMLA
                     CFAFTYYFVRKVAVNWFEGSWIFTLSTIGILAILNIKADTFAFPGLMMLFLMFLSLFG
                     TSGRNVTFFCKNKEAEYV"
     gene            530..1495
                     /locus_tag="PXE26_000825"
     CDS             530..1495
                     /locus_tag="PXE26_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005578999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL5593430.1"
                     /translation="MFSIIVPSYNRNQEINALLESLKQQTAYNFEVIIVDDCSKIPVS
                     ETLGILNEFNDISTKEKVRELLTRDSLSHIYSYPFDVKVVRNNPNVGAAQSRNVGATN
                     ATQEWLLFLDDDDRFMPEKCERLAAEIANNPTANFVYHPAKCEMVNEGFTYVTKPFKH
                     KSELTKENILKANKIGGMPMIGLKKSLFCKIGGLSDRLRSLEDYDFLLKLLEEPSFEP
                     LYVDEALTYCTFHTKRSSVSTDTTNTEKAIEYIQQTYIKTPEANNFKLNSLYILSYPH
                     VMNLSRKAAGYYFEMFKQTKNIKQLIIALVIFISPKLAINLKRFM"
     gene            1495..2295
                     /locus_tag="PXE26_000826"
     CDS             1495..2295
                     /locus_tag="PXE26_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_162680708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5593431.1"
                     /translation="MKFSVLMSLYIKEQPQYLRECFESLKVQTVQADEIVVCFDGAVT
                     PELEAIVEEYSAILPINAVKFPQNRGLGKTLNDGLTYCKNEWVFRMDTDDICMPERFE
                     KQVAFIEQNPETVIFGGQIAEFGQDIHDLVAYRNVPTTVEEIVRFTRLRCPFNHMTVA
                     YQKSKVLEVGGYQDLQEDYYLWIKLIAQFKQVANLPDLLVYARVGNGMVGRRRGMAQA
                     EAEWRLYKLKNRCQIHDPISGFGIFIMRAIPRLLPVSALKKVYGLLRK"
     gene            complement(2332..2838)
                     /gene="msrA"
                     /locus_tag="PXE26_000827"
     CDS             complement(2332..2838)
                     /gene="msrA"
                     /locus_tag="PXE26_000827"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDL5593432.1"
                     /translation="MQNIREIYLAGGCFWGVESFMQRIKGVIKAQSGYANGNTDNPSY
                     QEVCAGSGHAEVVKVTYDANQISLAKLLDYFFKVIDPVSINKQGGDIGIQYRTGIYYT
                     DPQDEPVVTAALAQLQTQFDQPLAVENQMLEQYFPAEEYHQEYLVKNPNGYCHIDIQL
                     MNEILKNQ"
     gene            3019..4281
                     /locus_tag="PXE26_000828"
     CDS             3019..4281
                     /locus_tag="PXE26_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HDL5593433.1"
                     /translation="MGTLNSFLGIIVLLFIAFLFSSNKRAINVRTVLGALALQVAIGA
                     LVLYVPAGRDALNAMATGVSKVISYGNEGISFLFGGLVSDKMFEVFGGGGFVFAFRVL
                     PVIIFFSALISLLYYIGVMQWVIRILGGLLQKALGTSKAESMSAAANIFVGQTEAPLV
                     VKPYISKMTESELFAIMAGGLASIAGSVMAGYAGMGVPLTYLIAASFMAAPAGLLFAK
                     IMVPQTEKFRDELEAVDLEKPANILDAAASGASSGMQLALNVGAMLIAFVALIALVNG
                     ILGGIGGWFGYDTLNLGQIFGWVFKPLAWVIGVPWEEAEIAGQMIGLKLAVNEFVGYL
                     EFAKYLAPESTVHLTDKTVAIITFALCGFANFSSIAILIGGIGAMAPSRRGDIARLGI
                     KAVIAGSLANLMSATIAGLFIGLGGAVL"
     gene            4426..5202
                     /gene="deoC"
                     /locus_tag="PXE26_000829"
     CDS             4426..5202
                     /gene="deoC"
                     /locus_tag="PXE26_000829"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HDL5593434.1"
                     /translation="MNLKKSAEIALSLMDLTTLNDNDTDEKVIALCQQANTKFGTPAA
                     ICIYPRFIPIARKALKQQGIEQVKIATVTNFPHGNDDIEIAVAETKAAVAYGADEVDV
                     VFPYKALIAGNEQIGFDLVKQCKAVCAANNVLLKVIIETGELKSAELIRKASEISIQA
                     GADFIKTSTGKVAVNATLESARIMLETIRDLGVADRVGFKAAGGVKTSEEAAQYLALA
                     ESILGNDWVSASHFRFGASSLLANLLATLNDEQQQAVQGY"
     gene            5223..5942
                     /gene="deoD"
                     /locus_tag="PXE26_000830"
     CDS             5223..5942
                     /gene="deoD"
                     /locus_tag="PXE26_000830"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDL5593435.1"
                     /translation="MATPHINAPEGAFADVVIMPGDPLRAKYIAETFLEDAKEVTNVR
                     NMLGYTGTYKGRRISVMGHGMGIPSCSIYAKELITEYGVKKIIRVGSCGAVRNDVKVR
                     DIVIGVGACTDSKVNRIRFRDNDFAAIADFDMTLAAHQAAKAKGIEARFGNLFSADLF
                     YSPDVEMFDVMEKYGILGVEMEAAGIYAVAAEYGAKALAICTVSDHIRTGEQTTSEER
                     QLTFNGMIEIALESVLIGDKQ"
     gene            complement(6018..6869)
                     /locus_tag="PXE26_000831"
     CDS             complement(6018..6869)
                     /locus_tag="PXE26_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HDL5593436.1"
                     /translation="MQTHRAIIESIFALAPKNELWATPISGLTVHAADRSIRFNGYIQ
                     DPSLCVVLLGERQICTNGHCQVFGNQEMMFCPVNLPIVTQTLSVAENQPYLAISLRLD
                     FDLIAKIITQLPPQKISENINQRTKWELENEIKDCLLRLLNLLNSPNHIHFLAPLILN
                     ELYFYLLQSEQGGYIRSLLSQDGNIAKIANATKILERKFADTLNMSALAEEVGMSVAG
                     FYAHFKSVTSMTPLQYQKSLRLNAAREKLQAGVSVSETAYQVGYESPSQFSREYKRQF
                     GESPKGR"
     gene            6984..7415
                     /locus_tag="PXE26_000832"
     CDS             6984..7415
                     /locus_tag="PXE26_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance protein"
                     /protein_id="HDL5593437.1"
                     /translation="MKIFYHTSATATGGRDGRTQVDDGSIGFDLVGFQNESGKVGTNP
                     EQLFAMGYAACFDSAMNHVAPTLGIKPTKSSTTVAVGIGQKADGAFGLDLDITITVEG
                     ISAEEAKTLISKAHEVCPYSNATRGNVDVRLHVKVVSEFDL"
     gene            7432..8112
                     /locus_tag="PXE26_000833"
     CDS             7432..8112
                     /locus_tag="PXE26_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HDL5593438.1"
                     /translation="MKMLDFETTVKTRQSIRKFLPLPMTETEIKQILADAQNAPSACN
                     TQPWLVHVASGETLARLKARFKKTFEAGINDADFEFNQTKFTGDYEPRWRNQYSHVFT
                     TSYGIPREDKAGRQVVYDDNIVGYGAPHMAFLFMPSIDGHDVNIASDVGMYSQTFLLS
                     LTARGFGGIPQLALAMFAKDVREELGIPEHYKLLHAISFGHPDWDAMQNKHHLGRVPV
                     EESATLHW"
     gene            8176..9300
                     /locus_tag="PXE26_000834"
     CDS             8176..9300
                     /locus_tag="PXE26_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-dependent flavin oxidoreductase"
                     /protein_id="HDL5593439.1"
                     /translation="MINLFTPYTLNNDVEIKNRLVVAPMTHSASNDDGTISEQERHFL
                     HNRAADMGLFITAATGVMRNGKAFYGQPEALDERYLASLTETANILKNQGTKAILQIF
                     HGGAQAIPALLDGANAVAPSEHANGAKALTADEVKQMIQAFANATDLAIQAGFDGVEI
                     HGANGYLIQQFFSTEFNQRTDEWGGSLEKRLRFPLAVVEAAVSVREKHQRPDFIIGYR
                     FSPEEPGEHGLTMTDTYALIDALCEKPLQYLHISLWDFGKKARRGADTNFTRMQLVHQ
                     HINGRLPLIGVGNLLTGEQIRKAYATGWAEFIALGKAVMLNPNVATLLKDNRDSEIVS
                     ELDPQQADHYGIPDRLWGYCVQGGAWLPPLKGQNGQPMDI"
     gene            9384..10001
                     /locus_tag="PXE26_000835"
     CDS             9384..10001
                     /locus_tag="PXE26_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HDL5593440.1"
                     /translation="MITLHYLNSSCSHRIVWLLEALGLDYELKIYHREESGFAPMEVK
                     ALHPLGKAPVLQDGDLVLAEGNAIIQHLIARYAEGKFEPTRGSEAYSMYHYWLSISAS
                     LFSANLVTMLANRSDLGAFGDYAKAQTPLYFNHIEQTLSDKKWIVGDELTGADFSLCF
                     PLQWGRNFVEMANYPNIARYLEQVENHPAYQKANQKALKLDMNRF"
     gene            10144..11085
                     /gene="argC"
                     /locus_tag="PXE26_000836"
     CDS             10144..11085
                     /gene="argC"
                     /locus_tag="PXE26_000836"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HDL5593441.1"
                     /translation="MSKYKIFVDGAVGTTGLRIHERLSQADDIELLTLPEEQRKDLNA
                     RVAKVAEADLTFLCLPDEASKELVANAPENTRICDTSTAHRVNPNWVYGFPELSGQRE
                     KIQNAKRVAVPGCHATGYIALVRPLVEKGILPADYPLSCHSLTGYSGGGKAMIADYEN
                     ENSPNAFNAPRVYGLTLQHKHLPEMQAVTQMQNPPIFTPVVADYYSGMLVTVPLQIFA
                     LQAVKSGEEIANLLADYYQTSRLIHVHPFQSLPEDGMLAANAYAGKDSLEIFIYGNST
                     QLLLAARFDNLGKGASGAAVQCMNIMLGRDEVEGLEL"
     gene            11177..12031
                     /gene="argB"
                     /locus_tag="PXE26_000837"
     CDS             11177..12031
                     /gene="argB"
                     /locus_tag="PXE26_000837"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HDL5593442.1"
                     /translation="MQQQEINQFANLLEKSTACLVKWQGKIIVVKYGGNAMINEELKK
                     SVMADLLLLHRLGVKVVLVHGGGLEISQGVKLLGKEPQFINGLRVTDSDTINVVLQML
                     AGKVNKSLVALLKGKGIGLCGIDGAMLQCKKLEAEVDYGFVGDIVKVDPTVIEIALNA
                     GLIPVVSTVGVDENGQAYNINADTAASEIAIALQAEKLVSMTDIAGLLRDRFDESTLI
                     PEVEVSEVQSLIEQGIIAGGMIPKIACCTDFIRAGGSEANIIDGRIDHAILVEMFGGK
                     NGTRFYKK"
     gene            12044..13228
                     /locus_tag="PXE26_000838"
     CDS             12044..13228
                     /locus_tag="PXE26_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HDL5593443.1"
                     /translation="MTSSNTIKQLDKDYIAQTYGRFDLALSHGKGCEVWDFEGNKYLD
                     FTSGIGVNSLGWADEDWLQAVTTQAGKLAHTSNLFFTEPASQLAQKLVAASGLKRAFF
                     CNSGAEANEGAIKTARKYSFDKYGSGRSTVLTLVNSFHGRTISTLASTGQEVFHKHFF
                     PFTEGFEYLPVNGIEALKARLETENVCGILLEVVQGEGGVCPLEADYLHAVQSLCQEK
                     DILFMIDEVQTGIGRTGTLFAYQQFDLTPGLVTLAKGLGGGLPIGAFLLGEKVEMTLG
                     KSDHGSTFGGNPVSCAAANVVIDKINAEFLAQVQQKGQLLQQRLASLPKVKSVSGLGL
                     MLGVEFEEGILAADIVAKCINKGVLFLTAKSKLRLLPPLMISEQQIEQGIRVLEDVLK
                     DS"
     gene            13411..13842
                     /locus_tag="PXE26_000839"
     CDS             13411..13842
                     /locus_tag="PXE26_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL5593444.1"
                     /translation="MSNQIALLLMSHGSFARAALASAELIVGQQENVAAIGVVAVDNV
                     ADIKRQMEQTIAELNTDKGLIILTDIVGGTPMNLASSQLTHPNVFACSGLNLPLLLEV
                     LMSRDGNLQEIRENLPLAYQNGFSLRTQQDFVSQEDDDDLL"
     gene            13829..14296
                     /locus_tag="PXE26_000840"
     CDS             13829..14296
                     /locus_tag="PXE26_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL5593445.1"
                     /translation="MICFSRIDDRLIHGQVVTTWVNLHRIEQIIVLNDAVAADPTQKQ
                     ILTMAAPQGIKVVAFGIEKFGEVLQKTQITRRTMLLFTNSIDVLRTVELGVSIDKLNV
                     GGMRYQARREQLSKAVSVTPEERQAFKTLLEKGVEVTVQMVPNDEKLNLQEII"
     gene            14299..15066
                     /locus_tag="PXE26_000841"
     CDS             14299..15066
                     /locus_tag="PXE26_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDL5593446.1"
                     /translation="MLTALLVACWAGICALDDIGTQMIRRPLLIAPVVGLIMGDLETA
                     LIIGATLEVMWMGIGNVGAYSAPDMISGTAIGTALGIAAGEASTAVALAVPTSLLAQQ
                     LLILYRSGVCALNPIAERWAASGDFDKIFRIHYIPMLIAFSIRAIPTFLAVYYGADII
                     AQAVSALPAKVITGLNVAGKIIPAIGIGLLMLMMIKKAELWTFLIAGFTLAVYLKLSV
                     LPITLIALPLALIYDLAVSKKAEAAPTKTADEEDYDL"
     gene            15063..15869
                     /locus_tag="PXE26_000842"
     CDS             15063..15869
                     /locus_tag="PXE26_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HDL5593447.1"
                     /translation="MSNKITKQDLNKVFWRMQVLNVTNNFQSMQAIGFLSSFIPVLKR
                     LYKDRPQEERAEAMKRHLKFFNSHVNSDALILGIAAAVEETTKEDEKETVTAIKTGLM
                     GPLAGLGDSLLKFTWLPICGSIGAALALSGNVLGPILMFLLYNSVNIATKYYGIHLGY
                     SKGVDLIHGAGNNILQRLGNMANVVGLMVIGALIASVVKVKVVSQIAAGDNVIKFQEM
                     LDKVMPGLLSLLLTVVIYWILKKTNGKYAATMILATMGICIGLVYAGILG"
     gene            15869..16906
                     /locus_tag="PXE26_000843"
     CDS             15869..16906
                     /locus_tag="PXE26_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HDL5593448.1"
                     /translation="MDSVYDIIRLEQGRYLFRQQPAQSVQIFFLDNPDSKDSKWLAET
                     DLAEFELKLSACEARPFFLIQSANGEQIVAERTLPVAGMNNFRDMGGYVAHQGKRVKW
                     GKLYRSDHLHNLRDEGVAYLDKLGIQTVIDYRSPNEVAKYPNPPINGREQTFRLDPNA
                     HTAELAAQFSADKHDEDRNLVNKIIAQKAEGNLINRYDIVMAQYRNFVEKAECQTAFA
                     EMLRLATDPENAPLVQHCRGGKDRTGFGAMLLLGILGVSKADIIADYMLTHYNRLARN
                     EEKMAIYRTFTQDQDVLDYLLSLIDTQPEFIEQSLNTIETQYGTIEQYAQRVLGITAK
                     EIEALRANYLA"
     gene            16996..18216
                     /gene="agp"
                     /locus_tag="PXE26_000844"
                     /pseudo
     CDS             16996..18216
                     /gene="agp"
                     /locus_tag="PXE26_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005628146.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glucose-1-phosphatase/inositol
                     phosphatase"
     gene            18524..>20167
                     /locus_tag="PXE26_000845"
     CDS             18524..>20167
                     /locus_tag="PXE26_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HDL5593449.1"
                     /translation="MSQDIQADLKKILALLSRNRRFQSLFLLLLRSEQFINSDALSTE
                     LQLSVRTVKKEIKLLKEKLEPYGIQIFSRPFYGYKLLIQFEELHTQLKQYFQISQPMT
                     VNNKFESRVNAILRRLLVSQRALKVEDFQSELYLSFTSALTKEFSQVKALLGKYGLIL
                     EAKPYHGMNIVGESYRKIMLTVRLYKYFTQLEHPFGIKEFEQCFACPMTEKIRERLAK
                     TIIHFNLVFSDIYAERFIIYLRYFYNQQPELLLPKLNFNYQQTNEYQFVIKLLEQLRE
                     QDSRFEFNPEVIRFLTYIAIASTDLYRFKDCNSDNYPLLLDKAWEIHRFIFTQFSAYL
                     NLSEIHDDTCRKDLLKMLIPIAMKMMLSISDDVDLGLFNQTELHRNPILAHTVEKLVD
                     DIEKNYGYSLSIREQYFIFDIFSGMVNRIELERKPLRLAIIALNGRLSTQQLKRNIKR
                     YFSDYILKIETKVLYELAIMEDKPYDYYLCNEYGKNMAIPYKPIYFADSSLNENEYAT
                     SLNEVFYHAYQYDEVLPSIKSIEIEAQYRLNEFHLEQEYL"
BASE COUNT         5949 a         3823 c         4464 g         5931 t
ORIGIN      
        1 tttaaatgga aatatatatt gccactgatt gccttcactg cgttaattct atttttggcg
       61 attgtttttc cggaaaaccg ttatgttgaa cacgccttag aaccggtaat taatttattg
      121 tccggcaccg gaaaagtcag ctcttcaacc gataatttag tgaaaaacca tctgttttta
      181 ccgactttaa atcagtttat ttccggtgat ggtttatatt acaccgaaac tggtggctat
      241 tatggtggat cggattccgg ctatattcgc caagtattat atggtggagt aagttatatg
      301 ttggcgtgtt ttgccttcac ttactatttt gtacgcaaag tggcggtgaa ttggtttgaa
      361 ggcagttgga tttttacctt atccaccatc ggcattttag ctattttaaa tattaaagca
      421 gatacctttg ctttcccggg gctgatgatg ctgtttctaa tgttcttgtc gctgtttgga
      481 acaagcggtc gaaatgtaac atttttttgc aaaaacaaag aggctgaata tgtttagtat
      541 tattgtgcct tcttataacc gtaatcaaga aatcaatgcg ttgcttgaga gtttaaagca
      601 acaaactgca tataattttg aagtgatcat tgttgatgac tgctcaaaaa taccggtcag
      661 tgaaacttta ggaattttaa atgaatttaa cgatatttct actaaagaaa aagtaagaga
      721 attacttact agagatagtt tatctcatat ttatagctat ccatttgatg tgaaagtggt
      781 gcgaaataac ccaaatgttg gggcggcaca aagccgaaat gtaggggcaa ctaatgccac
      841 acaagaatgg ctactgtttt tagatgatga tgaccgcttt atgcctgaaa aatgcgaacg
      901 tttagcggca gagattgcga acaatccaac tgccaatttt gtgtaccacc cggcaaaatg
      961 tgaaatggta aatgagggtt ttacttatgt caccaagccg tttaaacata aaagtgagct
     1021 aactaaagaa aacattctaa aagcgaataa aattggcgga atgccgatga ttggcttgaa
     1081 aaaatcactc ttttgtaaaa ttggtggatt atctgaccgc ttgcgatcac ttgaagatta
     1141 tgatttctta ctgaaattat tggaagaacc gagttttgag ccattgtatg tggacgaagc
     1201 cttgacctat tgtactttcc ataccaaacg ctccagtgtt tcaaccgata ccactaatac
     1261 agaaaaggct attgagtata ttcaacaaac gtatatcaaa acacctgagg cgaataattt
     1321 taagctcaat tcgctttata ttttaagtta tccacacgta atgaatttat cccgcaaggc
     1381 agccggttat tattttgaga tgtttaaaca gactaaaaat atcaaacaac tgattattgc
     1441 gttggttatt tttatttcgc cgaagttggc gattaatttg aaaaggttta tgtaatgaaa
     1501 ttttccgttt taatgtcgtt atacattaaa gagcaaccgc aatatttaag agaatgtttt
     1561 gaaagcttga aagtacaaac tgtgcaggct gatgaaatcg ttgtttgttt tgatggtgca
     1621 gttacgcctg aattagaggc gattgtagaa gaatatagtg caattttgcc gattaatgcg
     1681 gtgaaattcc cacaaaatcg aggtttaggt aaaacgctaa atgatgggct aacctattgt
     1741 aagaatgaat gggttttcag aatggataca gacgatattt gtatgccgga acgtttcgag
     1801 aaacaagtgg catttattga acagaatcct gaaaccgtga tttttggcgg ccaaattgct
     1861 gaatttgggc aagatattca cgatcttgtc gcttaccgca atgtaccaac cacggtggag
     1921 gaaatcgtca gattcactcg cttgcgttgc ccgtttaacc atatgacggt tgcttatcag
     1981 aaatccaaag tgttggaagt cggtggctat caagatctgc aagaagatta ctatttatgg
     2041 atcaaactca ttgctcaatt taaacaagtg gcaaacttgc cggatttatt agtgtatgcc
     2101 cgagtcggta acggaatggt tggcagacgc cgtggaatgg cccaagcaga ggcagaatgg
     2161 cgtttatata aattaaaaaa ccgctgccag attcacgatc cgatttcagg ttttgggatt
     2221 ttcataatgc gtgcaattcc tcgtttatta ccggtttcag cactgaaaaa agtgtacggt
     2281 ttgctcagaa aataaagcta aaaaaaccac agattgctct gtggtttttt gttattgatt
     2341 cttcaaaatc tcattcatta attgaatatc aatatggcag tagccgttcg ggttttttac
     2401 taaatattct tggtggtact cttcggcagg gaaatattgc tctaacattt ggttttccac
     2461 tgccagcggc tgatcaaatt gggtttgtaa ttgtgcaagt gcggcggtta ccaccggttc
     2521 gtcttgtggg tcggtataat aaataccggt gcggtattga ataccgatgt cgccaccttg
     2581 tttgttaatg ctcaccgggt ctattacttt aaagaagtaa tctagtaatt ttgccaagct
     2641 aatttgattg gcatcataag tcacttttac cacttcagcg tgtccgctac cggcacacac
     2701 ctcttgatag cttgggttat cggtattacc gttggcatag cctgattgtg ccttaatgac
     2761 acctttaatc cgttgcataa aagattccac gccccagaaa cagccaccgg ctaagtaaat
     2821 ttcacgaata ttttgcatat tacctctcta taattgtaaa tttttcgata aatttgactg
     2881 cttgtgatga ataataaaat accataattt agtttttgtc aaattttgtc ttgaatgatg
     2941 ataatttcac aagatttttt gcctaaaaat aggtatagta tcgtcacctt ttttaatcaa
     3001 tttataatta gaggttctat gggtactctt aacagctttt taggcattat tgttttacta
     3061 ttcattgcat ttttattttc gagcaataaa cgtgcaataa acgtgcgtac cgtattaggc
     3121 gcattagcat tgcaggtagc tattggtgca ttggtgcttt atgtgccggc agggcgtgat
     3181 gccttgaatg cgatggcaac aggtgtgtca aaagtgattt cttacggtaa tgaagggatt
     3241 tcatttttat tcggtggctt agtcagcgac aaaatgtttg aagtatttgg cggcggcggc
     3301 tttgtgttcg ctttccgtgt acttccggtg attattttct tctctgcact catttctttg
     3361 ctttactaca ttggagtgat gcaatgggta atccgtattt taggtggttt attacaaaaa
     3421 gcattaggta catctaaagc ggaatctatg tctgcggcag ctaatatttt cgttggccaa
     3481 actgaagctc cattggtagt aaaaccttat atcagcaaaa tgacagaatc tgaactcttt
     3541 gcgattatgg cagggggctt agcttctatt gcaggttctg ttatggctgg ttacgcagga
     3601 atgggcgtac cattaacgta cttaatcgca gcctccttta tggcggctcc ggcagggtta
     3661 ttattcgcca aaattatggt gccacaaacc gaaaaattcc gtgatgaact agaagcggta
     3721 gatttagaaa aaccggcaaa tattcttgat gcagcagctt caggtgcttc ttcaggtatg
     3781 caactggcat taaacgtagg ggcaatgtta attgcattcg tggcgttaat tgcattagtg
     3841 aatggtattt taggaggtat tggcggctgg ttcggttatg ataccttaaa cttaggtcaa
     3901 attttcggct gggtatttaa accgcttgcg tgggtaatcg gtgtgccttg ggaagaagca
     3961 gaaattgcgg ggcagatgat cggcttaaaa ttagcggtaa atgaattcgt gggttattta
     4021 gagtttgcta aatacttagc tcctgagtca accgtacatt taacggataa aactgttgcg
     4081 attattacct ttgcactttg tggctttgcg aacttcagct cgattgcgat tttaatcggt
     4141 ggtatcgggg caatggctcc aagccgtcgt ggtgatattg cccgacttgg gattaaagcc
     4201 gtcattgctg gctcacttgc caacttaatg agtgcaacca ttgccggctt gtttatcggc
     4261 ttgggtggag cagttctcta atccagtttg tataaaacca ctagaaatag tggttttatc
     4321 tttttttatc tgacgtaaac ggttgctttt ggtttgtcta tttacaagcg gtcagatttt
     4381 tataaaattt taccaaccac cacgcattta ataaaaggag acactatgaa tttaaaaaaa
     4441 tccgctgaga ttgctctttc gttgatggat ctcaccacat taaatgacaa tgatactgat
     4501 gagaaagtca tcgcattatg ccaacaagcg aacaccaagt ttggcacacc ggcagcaatt
     4561 tgcatttatc cacgttttat cccgattgcc cgcaaagcat tgaaacagca aggtatcgag
     4621 caagtaaaaa ttgcgacagt cacgaatttc cctcacggta atgatgatat tgaaattgcg
     4681 gtagctgaga ccaaagccgc agttgcttat ggggcagatg aggtagatgt ggtattccct
     4741 tataaagcat taattgcagg taatgagcaa ataggtttcg acttggtaaa acaatgcaaa
     4801 gcagtttgtg ctgccaataa tgtgttgctt aaagtgatta ttgaaaccgg cgagttaaaa
     4861 tcagcagagc ttattcgcaa agcaagcgaa atttcgattc aagcaggggc tgattttatt
     4921 aaaacctcaa ccggcaaggt ggcagtgaat gctacccttg aatctgcccg cattatgctt
     4981 gaaaccattc gtgatttagg tgtggcagac cgtgttggct ttaaagctgc aggtggggta
     5041 aaaacctcgg aagaagccgc ccaatatctt gcacttgcgg aatctatttt aggcaatgac
     5101 tgggtgagtg catcacattt tcgcttcggt gcatcaagtt tattagctaa tttattagca
     5161 acattgaatg atgaacagca gcaagctgtt caaggttatt aattaataaa gaggaacata
     5221 aaatggctac tccacacatt aacgcacctg aaggtgcttt cgctgacgtt gtaattatgc
     5281 cgggcgatcc gcttcgtgct aaatatatcg ctgaaacctt tttagaagat gcaaaagaag
     5341 tgaccaatgt tcgcaatatg ttaggctaca ccggcactta taaaggtcgc cgcatttcag
     5401 taatggggca cggtatgggg attccatctt gctcgattta cgctaaagaa ttaattactg
     5461 aatatggcgt gaagaaaatt atccgtgtcg gctcgtgcgg tgcggtacgt aatgatgtca
     5521 aagtgcgtga tattgtcatc ggtgttgggg cttgtaccga ttctaaagta aaccgtattc
     5581 gcttccgtga taacgatttt gcggcgattg ctgattttga tatgacatta gctgctcacc
     5641 aagcagctaa agcgaaaggc attgaagctc gtttcggtaa tttattctca gccgatttat
     5701 tctactcacc tgatgtcgaa atgtttgatg taatggaaaa atacggcatt ttaggcgtag
     5761 aaatggaagc agcaggcatt tatgcggtag cggcagagta tggagcaaaa gcattagcaa
     5821 tttgcaccgt ttcagaccat atccgcaccg gtgagcaaac tacctctgaa gaacgtcaat
     5881 taacctttaa tggtatgatt gaaattgcgt tagagtcagt attaattggc gataagcagt
     5941 aatttctaac ctgacaagcg gtgaaatttt gcaaaaaatt tgcagaattt gaccgcttgt
     6001 tatttttgat tcttccttta tcttcctttc gggctttcgc caaactgcct tttatattct
     6061 cgactaaact ggcttgggct ttcatagccg acttgatagg cggtttcact cacgcttact
     6121 cctgcttgta gtttttccct tgccgcattt agtcttaacg atttctgata ttgcagtggt
     6181 gtcattgaag ttacgctttt aaaatgagcg taaaaccccg ccacgctcat tcctacctct
     6241 tcagccagtg ctgacatatt tagtgtatcg gcaaattttc tttctaagat ttttgttgca
     6301 ttggcaattt tagcaatatt gccatcttga gagagtagag agcgtatata gccaccttgc
     6361 tcagattgta ataaatagaa atagagttcg tttaatatca atggtgcaag aaaatgaata
     6421 tgatttggag aattaagcaa atttagtaag cgtaacaaac agtctttaat ttcattctcc
     6481 agctcccatt tagtgcgttg attaatgttt tcacttattt tctgtggggg aagctgcgtg
     6541 ataattttgg caataagatc aaaatccaag cgtagtgaaa tcgcaagata aggctgattt
     6601 tctgcaactg ataaggtttg ggtaacaatc ggcaaattca cagggcaaaa catcatttcc
     6661 tgattaccga agacttggca atgtccattg gtacagattt gccgctcgcc taataatact
     6721 acacataaac ttgggtcttg gatataaccg ttaaatctaa tagaacgatc ggcagcgtga
     6781 acggttagcc ctgaaatggg agtagcccaa agttcatttt tcggagcgag ggcaaaaata
     6841 gattcaataa tagctcgatg agtttgcata ataatctcac ttttagaaaa ttaggcatat
     6901 tttatagaaa atcaggcaag acgacaaata gcaaaaagcg gataatatcc ccaatcaaat
     6961 aaagcattta ataggagcaa aatatgaaaa ttttttatca cacatcagca actgcaaccg
     7021 gtggtcgtga cggcagaacc caagtggatg acggttctat cggttttgat ttagtcggtt
     7081 tccaaaatga aagtggcaaa gtaggcacta atccggaaca attattcgca atgggctatg
     7141 ctgcctgctt tgacagtgca atgaatcacg ttgccccaac cttaggcatt aagccaacca
     7201 aatccagtac cactgttgca gttgggattg gtcaaaaagc tgatggtgct ttcggcttag
     7261 atttagatat taccattact gtggaaggca ttagtgcgga agaagcgaaa actttaatta
     7321 gcaaggcaca cgaagtttgc ccatattcaa atgcaacccg tggtaatgta gatgtgcgtt
     7381 tacacgttaa agtcgtgagt gaatttgact tataaaaaat aaatagggga aatgaaaatg
     7441 ttagattttg aaaccacggt aaaaacacga caatcaatcc gcaagttttt accgcttccg
     7501 atgacggaaa ctgaaatcaa acaaattctt gccgatgcac aaaatgcccc ttcggcttgt
     7561 aatacacagc cgtggttagt acacgttgcc tctggtgaaa cgctagcacg cttaaaagct
     7621 cgttttaaaa agacttttga agcgggcatt aatgatgcgg attttgagtt caatcaaacg
     7681 aaatttaccg gtgactacga accacgttgg cgtaaccaat acagccacgt ttttaccacc
     7741 agctatggca ttccccgtga agataaagcc ggtcgccaag tggtgtatga tgacaatatt
     7801 gtcggttatg gtgcgccaca tatggcattc ctatttatgc caagcattga cggacacgat
     7861 gtcaatattg ccagcgatgt tggtatgtat tcgcaaactt tcttgctctc actcaccgct
     7921 cgtggttttg gcggcattcc gcagcttgcc cttgcgatgt ttgctaaaga tgtgcgtgaa
     7981 gagttaggca ttcctgaaca ttacaagctc ctccacgcca tttctttcgg acacccagat
     8041 tgggacgcta tgcagaacaa acaccattta gggcgtgtgc cggtggaaga gagtgcgacc
     8101 ttacattggt aataaacaag cggttgattt ttcgcaaaaa tttgcgaaat caaccgtatt
     8161 ttttaggaga atacgatgat aaatttattt accccttata ctctgaataa cgatgtagaa
     8221 attaaaaacc gccttgtagt tgccccaatg acccattccg cctccaacga tgacggcaca
     8281 attagcgagc aagaacgcca tttcttgcat aatcgtgcag cagatatggg cttatttatc
     8341 accgcagcaa ccggggtaat gcgtaacggc aaagcgtttt acggtcagcc ggaagctctt
     8401 gatgaacgct atttggcaag cctgacagaa actgccaata tcttgaaaaa tcaaggcacc
     8461 aaagcgattt tgcaaatttt ccacggtggg gcacaagcta ttcctgcctt gcttgacggg
     8521 gcgaatgcag ttgcgccgtc cgagcacgcc aacggtgcta aagccctaac ggcggacgaa
     8581 gtgaagcaaa tgatccaagc tttcgctaat gccaccgatt tagctattca agccggtttt
     8641 gatggtgtgg aaattcacgg ggcgaacggc tatttaattc aacaattttt ctctactgaa
     8701 tttaatcaac gcactgatga atggggcggt agccttgaaa aacgcttgcg tttcccgtta
     8761 gcggtggttg aggcagcggt cagcgtgcgt gaaaaacacc aacgccctga ttttattatc
     8821 ggctaccgtt tctcaccgga agagccgggc gaacacggct taaccatgac cgatacctac
     8881 gccctgattg atgctttgtg cgaaaagccg ttgcaatact tgcacatttc actctgggat
     8941 ttcggcaaaa aagcccgccg tggtgcagat accaacttca cccgtatgca actggtacac
     9001 caacacatca acgggcgttt accgctgatc ggcgtgggta acttattaac cggtgaacag
     9061 atccgtaaag cttatgcaac aggctgggca gaatttatcg ccttaggtaa agcggtaatg
     9121 ctcaacccga acgtggcgac cttgttgaaa gataatcgag acagtgagat tgtcagcgaa
     9181 ctcgacccgc aacaagccga ccactacggc attcccgata gactatgggg ctactgcgtg
     9241 caaggtggtg cttggttacc gccgcttaaa gggcaaaacg ggcaaccaat ggatatttaa
     9301 tcattacaga caagcggtca tttttttgta aaaatttgca attaagtgac cgcatttttt
     9361 caattatctg aaggagaaaa attatgatta cgttacatta cctgaacagt tcctgctctc
     9421 accgcatcgt ttggttgttg gaagccttag gcttggatta cgagctaaaa atctaccatc
     9481 gtgaagagag cggttttgca cctatggagg taaaagcctt gcacccactt ggcaaagccc
     9541 ctgtgttgca agatggcgat ttggtgcttg ccgaaggcaa tgcgattatc cagcatctga
     9601 ttgcccgtta cgccgaaggg aaatttgagc cgactcgtgg tagcgaagcc tattcaatgt
     9661 atcactactg gttgtcgatt tctgcttcat tattctcggc aaaccttgtg acaatgttgg
     9721 ctaatcgctc tgatctcgga gcttttggcg actacgcaaa agcgcagact ccgctgtatt
     9781 ttaaccatat tgagcaaaca ctttcagata aaaaatggat tgtgggtgat gaactaaccg
     9841 gtgcggattt ttctctctgt ttcccactac aatgggggcg taattttgtt gaaatggcaa
     9901 attacccgaa tattgcacgc tatttagaac aggtggaaaa tcaccctgct taccaaaaag
     9961 cgaatcaaaa agccctgaag cttgatatga atagatttta atactctttt taatccctaa
    10021 cattttgtta gggatttttg aatataaaat caattaatgt gaataattat tcaaaaataa
    10081 acttgagttt agccttaaat agccttagac taccgagcag aaaaagtcaa agaaggattt
    10141 tcaatgagca aatacaagat ttttgttgat ggggcagtag gaacaaccgg gctacgcatt
    10201 cacgaacgtt taagccaagc ggacgatatt gaattattaa ccttgcccga agagcagcgg
    10261 aaagatttga acgcccgtgt ggcaaaagtc gcagaggcgg atttaacttt cctctgtttg
    10321 ccggatgaag cctcaaaaga attagtagca aatgcaccgg aaaatacccg aatttgcgat
    10381 acttcaaccg ctcatcgggt caatcctaat tgggtttatg gttttccgga attgagcgga
    10441 caacgtgaaa aaatccaaaa tgccaagcgt gttgcggtgc cgggttgcca tgccacgggc
    10501 tatattgcgt tggttcgtcc actggtggaa aaagggattc tgcccgccga ttacccttta
    10561 agttgtcatt ccttaaccgg ctattcaggc ggtggcaaag cgatgattgc tgactatgaa
    10621 aatgaaaaca gcccaaatgc tttcaatgcc cctcgtgttt acggtttaac tctccaacac
    10681 aaacatttgc ctgaaatgca ggcagttacc caaatgcaaa acccaccgat tttcacccct
    10741 gtggttgctg attattacag cggaatgtta gtcactgtgc cattgcagat cttcgcctta
    10801 caagcggtca aatccggcga agaaattgca aatttgctcg ccgattacta ccaaaccagc
    10861 cgactaattc acgttcaccc tttccaatct ctacccgaag acggaatgct tgccgcgaat
    10921 gcttatgcag gtaaagacag cttagagatt tttatttacg gcaacagcac ccaactttta
    10981 cttgctgccc gttttgacaa tttaggcaaa ggggcatcag gtgccgcagt gcagtgtatg
    11041 aatattatgt tgggaagaga tgaggttgag gggttagagc tttaaatata aatgtaggga
    11101 caggtcctgt gcctgtccga taatcatcgc ccatattcgg acgggcacag gacccgtccc
    11161 tacaagagaa agaaatatgc aacaacaaga aatcaatcaa tttgcaaatt tattagaaaa
    11221 atccaccgct tgtttggtga aatggcaggg taaaatcatt gtggtgaaat atggcggtaa
    11281 cgcaatgatt aatgaggaac tgaaaaaatc agtgatggca gatctgctgt tacttcatcg
    11341 tttaggcgta aaagtggtac tggtacacgg tggcgggctg gagatttcac aaggcgtgaa
    11401 attattgggt aaagaaccgc aatttatcaa cgggttgcgt gttaccgata gcgatacgat
    11461 taacgtggtt ttgcaaatgt tggcaggcaa agttaataaa agccttgtcg ccttattaaa
    11521 agggaaaggc attgggctgt gtggtattga tggggcgatg ttgcaatgca aaaaattaga
    11581 ggcagaggtg gattacggct ttgtgggcga tattgtgaaa gtcgatccaa ctgtgattga
    11641 aattgctctt aatgcgggct tgattccggt tgtttccacg gtgggcgttg atgaaaacgg
    11701 gcaggcttat aacattaatg cagacaccgc tgccagcgag attgcgattg cgttacaagc
    11761 ggaaaaattg gtctcgatga ccgatattgc aggtttattg cgagatcgct ttgatgaaag
    11821 caccttaatt ccggaagtgg aagtaagcga agtgcagtcc ctgattgagc aaggcattat
    11881 tgccggtggg atgatcccca aaattgcgtg ctgtaccgat ttcatcagag ctggtggctc
    11941 tgaggcaaat attattgacg ggcgaatcga ccacgccatt ttggtagaaa tgttcggtgg
    12001 caaaaacggc acacggtttt ataaaaaata acaggaaagt gaaatgacaa gcagtaatac
    12061 gattaagcaa ttagataagg attatatcgc ccaaacctat ggcagatttg accttgcact
    12121 gtcgcacgga aaaggctgtg aagtgtggga ttttgagggc aataagtatc ttgattttac
    12181 cagtggcatt ggggtaaata gtttaggctg ggcggatgag gattggctac aagctgttac
    12241 cacacaagcc ggcaaattag ctcacacctc aaacctgttt tttaccgaac cggcaagcca
    12301 attagcccaa aaattagtgg ctgcaagcgg tctaaaacgg gcattttttt gcaattcagg
    12361 ggcagaggca aatgaaggag caattaaaac cgcccgcaaa tatagtttcg acaaatacgg
    12421 ttccggtcgt tcaacggttt taaccctcgt gaactctttt cacggacgaa ccatttcaac
    12481 cctcgcatcc actgggcaag aggtattcca caagcatttt ttccccttta cagagggctt
    12541 tgaatattta cctgtaaatg gcattgaggc actgaaagct cgcttggaaa ctgagaacgt
    12601 ttgcgggatt ttgctggagg tggtgcaggg cgagggcggt gtttgcccat tagaggcgga
    12661 ttatctgcac gccgtgcaaa gcctgtgcca agaaaaagat attttattta tgattgatga
    12721 ggtgcaaacc ggcattgggc gaacgggcac actttttgct tatcaacaat ttgatttaac
    12781 tcctggttta gtcacgctcg ctaaaggctt gggcggcggc ttgccgattg gtgctttcct
    12841 gttaggcgaa aaagtggaaa tgacattagg caaaagcgac cacggctcaa cctttggtgg
    12901 caatcctgtt tcctgtgctg ctgcaaatgt agtaatcgat aaaataaacg ccgaatttct
    12961 cgcccaagtg caacaaaaag ggcagttgtt acagcaacgc ttagcgagct taccaaaagt
    13021 taaatccgtt tcaggcttag gtttaatgct cggcgtagaa tttgaggaag gcattttagc
    13081 cgctgatatt gttgcaaaat gtatcaacaa aggtgtgctg tttttaaccg ctaaaagcaa
    13141 gttaaggcta ctcccaccgc tgatgatctc tgaacaacag atagaacaag gaatcagagt
    13201 gttagaggat gtcttgaaag attcttgagt tattataaac agtaggaata tcttcttact
    13261 gttttttatt actattatat agtagcctac tttaatctgt tgtcacttta tatttcttct
    13321 tatgtgtacg atatatcgtg caataacttc ccttgtttat ctgtataaca ttttatttaa
    13381 tagaatgact tataaatcaa ggagtgactt atgtctaatc aaattgcgtt attgttgatg
    13441 agccacggca gttttgcgag ggcggcgttg gcgagtgccg agctgattgt cgggcagcag
    13501 gaaaatgtgg cagctatcgg cgtagtagca gtggataatg tagcggacat taaacggcag
    13561 atggagcaaa ccattgctga gttaaacacc gacaaaggct tgattattct caccgatatt
    13621 gttggtggta cgccgatgaa tcttgcctct tctcaattaa cccaccctaa tgtttttgcc
    13681 tgttcgggtt tgaatttacc tttattgcta gaagtgctga tgagccgtga cggcaatttg
    13741 caagaaattc gggaaaatct accgcttgca taccaaaacg gatttagcct acgcacacaa
    13801 caagattttg tttcacagga ggacgatgat gatctgcttt agccgtattg atgaccgttt
    13861 aattcacggt caagtagtca ccacttgggt taatttacac cgtattgaac aaattattgt
    13921 gttaaatgat gcggtggcag cggatccaac ccaaaaacag attttaacga tggcagcacc
    13981 gcagggaatt aaagtggtcg cgtttggcat tgaaaaattt ggtgaagtgt tgcagaagac
    14041 acaaattacc cgccgtacta tgttgttgtt taccaatagc attgatgtgt tacgcactgt
    14101 agaactaggt gtatcgattg acaaattgaa tgtcggcgga atgcgttatc aagctaggcg
    14161 tgagcagtta agtaaagcgg tttcagttac gccagaagag cgtcaagcat ttaaaacctt
    14221 attggaaaag ggtgttgaag taacggtaca gatggtaccg aatgatgaaa aacttaactt
    14281 acaggagatt atctagctat gctgactgca ctacttgttg cctgctgggc aggtatttgt
    14341 gccttagatg atattggcac acagatgatc cgccgtccgt tgttaatcgc accggtggtc
    14401 ggattgatta tgggggattt ggaaacggcg ttgattattg gtgctacgct tgaagtgatg
    14461 tggatgggga tcggcaatgt tggtgcatat tctgcaccgg atatgatttc cggaaccgct
    14521 attggcaccg cacttggtat tgctgctggt gaagcttcta ctgcggttgc actcgcagta
    14581 ccgacctcac tcttggcaca gcagttactc attctttacc gctccggcgt atgtgcattg
    14641 aacccaattg ctgaacgctg ggcggcaagc ggtgattttg acaagatttt ccgcattcac
    14701 tatatcccaa tgttaattgc cttttctatt cgtgctattc caacgttctt agccgtctat
    14761 tacggggcgg acattattgc ccaagcggtc tctgctctgc cggcaaaagt gattaccgga
    14821 ttaaatgttg caggcaaaat tattcctgcc atcggtatcg gtttgctgat gttaatgatg
    14881 attaagaaag ccgaactttg gacgttctta attgctggct ttacgttggc ggtttatctc
    14941 aaattatcag tattgccgat taccttaatt gcactaccgc ttgcgttgat ttacgactta
    15001 gcagtaagca aaaaagctga agctgcacca accaaaaccg cagatgaaga ggattatgac
    15061 ctatgagcaa taaaattacc aaacaagatt taaacaaagt gttttggcgg atgcaggtgc
    15121 tgaacgtcac aaacaacttc caatcgatgc aggcgattgg atttttaagt agctttattc
    15181 cggtattaaa acgactttat aaagatcgtc cacaggaaga acgagcggaa gcaatgaaac
    15241 gccacttaaa attttttaac agccacgtta attctgatgc attgatttta ggaattgccg
    15301 ctgcggtaga agagactacc aaagaggatg aaaaagagac agtaaccgcg attaaaaccg
    15361 gtttaatggg gccgttagca gggctgggag acagcttgtt gaaattcacc tggttaccga
    15421 tttgcggtag tatcggggcg gcattggcac taagtggcaa tgtgttaggc ccgattttaa
    15481 tgttcttgtt gtataacagt gtaaacattg cgacgaagta ttacggtatc catctaggtt
    15541 acagcaaagg ggttgattta attcacggtg cgggtaataa cattttgcaa cgactcggca
    15601 atatggcaaa tgtggttggt ttaatggtga ttggcgcatt aattgcctcc gttgtgaaag
    15661 tcaaagtagt ttcacaaatt gccgctggtg ataatgtgat taaattccaa gagatgttag
    15721 ataaagtgat gccgggacta ctcagcttac ttttaactgt cgtgatctac tggattttga
    15781 agaaaactaa cggcaaatat gctgcaacga tgatccttgc tacgatgggg atctgtatcg
    15841 gcttagtcta tgcaggaata ctcggctaat ggacagtgtg tatgacatta ttcggttgga
    15901 acagggcaga tacctgttcc gccaacagcc ggctcaatcg gtacagattt tctttctgga
    15961 caaccctgac agtaaggata gcaaatggct ggcggagact gatttggcag agtttgagct
    16021 gaaattgagc gcttgtgaag cccgtccgtt cttcctcatt caatcagcaa acggagaaca
    16081 gattgttgct gaacgcacct tacctgttgc cggaatgaat aattttcggg atatgggggg
    16141 ctatgtcgct catcagggca agcgagtgaa atggggcaag ttataccgct ccgatcatct
    16201 gcataattta agagacgaag gcgtggctta tcttgataaa ttgggaattc agactgttat
    16261 tgactatcgc agcccgaatg aagtcgccaa atacccaaat cccccaatta atggcagaga
    16321 gcaaactttt cggcttgatc cgaatgcaca tactgccgag cttgctgccc aatttagtgc
    16381 agacaagcac gatgaagatc gtaatttggt caataaaatc attgctcaaa aagctgaagg
    16441 taatcttatc aatcgctacg acattgtaat ggcacaatat cgtaattttg tcgaaaaagc
    16501 agaatgccaa accgcctttg ctgaaatgtt aaggttggcg acagaccctg aaaatgcacc
    16561 attggttcaa cactgccgtg gagggaaaga tcgcactggt ttcggtgcaa tgttactgct
    16621 tggtatttta ggcgtgagta aagctgatat tattgctgat tatatgctta ctcattataa
    16681 ccgccttgct cgtaacgaag agaaaatggc gatttaccgt accttcactc aagatcaaga
    16741 tgtgttggac tacctattgt ctttaatcga tactcaaccc gaatttatcg aacaatcgct
    16801 taatactatt gaaacccaat atggtactat tgagcaatat gcccaaaggg tattaggtat
    16861 tactgcgaag gaaattgaag cattacgggc aaattatttg gcgtagaacg gtagggtgta
    16921 atattgaaca cactacaaat ggagaaattt catatgcgtt attttgcaaa acattggtat
    16981 aaaactaccg cttgtctgac aacaattttc acagcatttc ctctttttgc tcaaccaatt
    17041 gaaaatatac caacttccca ctacgaatta gaaaaaatca ttatatttag ccgacacggg
    17101 ttacgttccc ctcttacaga aaaaggcagt gatttagaaa aatcaacccc ttataaatgg
    17161 gcaaattgga gtgtaccgac cggtcattta acccataaag ggacgctgtt ggaaacctat
    17221 tttgggcagt atcttggtca atggctcaca cataatgggt tattggacaa ggcaagctgt
    17281 gaaagtggga agcagattga ggtttatgct aatagcctgc aacgtacaat tggcactgca
    17341 caagctttgg ttgccggtgg gttttcaggt tgtaatgtac aagttaaaca ccaccagcag
    17401 attggaaaga tggatccggt gtttaatcca attattcgct ccgatgacca gacatttgtg
    17461 caaacagcat taagcaaaat tgacctcaat aaaacccatc agtatttagc gccatcctat
    17521 catttattaa gcgaaataat cgattatgct cattcagaaa aatgtttgca ggaaaaacag
    17581 tgtgaatttt ttaatgatgt tggtaaatta aggattaaaa aggataaata accaggtgtt
    17641 tccggtacga tgcgattaag taaaaatatt gtcgatgcct tattgctgca atattatgaa
    17701 ggttttcctt taaaagagat tgcaaataac cagcttgata gtgatcagaa atggcaaaca
    17761 ctcaataaaa ttaaaaacga ttaccaattt atgctacgag gagatccatt tattgctaaa
    17821 catatttcat taccgctatt aaaatatatt cagcaagatt taaatagtga aaataaaata
    17881 acacttttag tcggacacga ttccaatatt atagccttac tttctgcatt aaatgttaag
    17941 ccttataaat tagcacatca atatgaacaa actccaatag gagggaaagt ctttattgaa
    18001 atctggaaag aaaaaagtag ccaagcacaa aaagttaaac tggaatatgt atatcaatct
    18061 actgaccaaa ttcgtaaagc gattccacta agccttgata aaccaccgca acatcacatt
    18121 ttgagtttgg attattgcca agctgaccaa tatggattat gcgattatat ggaatttaaa
    18181 cagttactgg aaaaagtcat tgctgataca ttgtgagatt ttgacaaagt gagtgaaaaa
    18241 ggtagcataa aaaagtcggg acagttgcca gctgctccct gtaagatgtt gtttacagca
    18301 ctagtaatgc tactatcccc aaaaagctgc tgaaaggcag cttttttgtt gtatataaaa
    18361 gtacaccttt ctacgcttca ttctttttct ccaattaaac ctaatttagg acttctagtg
    18421 ataaattcgg tatcatatct taattcacta catatcgtgc aagccttaaa attgaaaggg
    18481 ctgacgaaat cctatttaat tctgacacac ataagggaat attatgtcgc aagatattca
    18541 agccgattta aaaaagatat tggcactatt aagccgtaac cgtcgatttc aatcattatt
    18601 tttattactg ttaagaagtg aacaatttat taatagtgat gcactttcta cggagttaca
    18661 gctttcagta cgaacggtaa aaaaagagat taagttatta aaagaaaaac ttgaacctta
    18721 cggcattcag attttttctc gaccgtttta tggctataaa ttattgattc agtttgaaga
    18781 attacacacg caactaaaac agtatttcca aatatcacag ccgatgacgg taaataataa
    18841 atttgagtct cgggtaaatg cgattttacg ccgattactg gtgagccagc gtgcattgaa
    18901 agttgaagat tttcagagtg agctttattt aagttttacc agtgccttaa caaaagaatt
    18961 tagtcaagtt aaagccttgt taggaaaata tggattgata ctcgaagcga aaccctatca
    19021 cggaatgaac attgtaggtg aaagttatcg taaaataatg ctcacagtac gattatataa
    19081 atattttacc cagcttgaac atccatttgg aattaaagaa tttgaacagt gttttgcttg
    19141 tcctatgact gaaaaaatcc gtgaaaggtt agctaagaca attattcatt tcaatttagt
    19201 attttctgat atttatgctg agcggtttat tatttactta cgctattttt ataatcaaca
    19261 gcctgagtta ttgttaccga agttaaattt taattatcaa cagacgaatg aatatcagtt
    19321 tgtaattaag ttactggaac agcttcgtga acaagacagt cgttttgagt ttaatccgga
    19381 agttattcga tttctgacct atattgcgat agccagtaca gatctctacc gctttaaaga
    19441 ttgtaattcg gataattacc cattgttgct agataaggct tgggaaattc atcgttttat
    19501 ttttactcag ttttctgcat atttaaattt atcggaaatt cacgatgaca cttgccgtaa
    19561 agatttgctt aaaatgctga tccctatcgc aatgaaaatg atgcttagca tttcagatga
    19621 tgtggattta gggctattta accaaacaga actacataga aatccaattt tggctcatac
    19681 agtagaaaaa ttagtggatg acattgaaaa aaactacggg tatagcctat ctattcgaga
    19741 acagtatttt atttttgata ttttttccgg aatggttaat cgaattgaat tagaacgtaa
    19801 accgctccga ctggcgatta ttgcccttaa tggcagatta agcacccaac agttaaaacg
    19861 gaatattaag cggtactttt ccgactatat tttgaaaatt gaaaccaaag tgctatatga
    19921 gcttgccata atggaagata aaccttatga ctactatctc tgtaatgaat atggaaaaaa
    19981 tatggctatt ccctataagc ctatttattt tgctgacagt agtttaaatg aaaatgaata
    20041 tgcaacatca ctcaacgaag tattttatca cgcttatcaa tatgatgagg tgttgcctag
    20101 cattaaatcg attgaaattg aagcacaata tcgcctaaat gagtttcatc ttgagcaaga
    20161 atatctt
//
LOCUS       DANLZD010000031        19976 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.031, whole genome shotgun sequence.
ACCESSION   DANLZD010000031 DANLZD010000000
VERSION     DANLZD010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19976
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.031"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..573
                     /gene="plsY"
                     /locus_tag="PXE26_000846"
     CDS             <1..573
                     /gene="plsY"
                     /locus_tag="PXE26_000846"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HDL5593450.1"
                     /translation="AYLLGSISSAVIFCKLAGLPDPREVGSHNAGATNVLRIGGKSAA
                     LGVLLFDILKGTLPVAMGIYFELSPSQLGFIALAVCLGHIFPIFFQFRGGKGVATAFG
                     AISALSFIVAGGAIGTWLLVFLISGYSSLSAVFTALVVPFYIWWFEPQFTFPVALVCC
                     LLVYRHHDNIQRLWRGQEDKLWDKFKKNRA"
     gene            complement(647..2554)
                     /gene="parE"
                     /locus_tag="PXE26_000847"
     CDS             complement(647..2554)
                     /gene="parE"
                     /locus_tag="PXE26_000847"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HDL5593451.1"
                     /translation="MSEKRYGADEITVLKDLEPVQLRPGMYTDTTRPNHLGQEVIDNS
                     VDEALSGFADKIDVILHADNSLEVVDNGRGMPVDIHSTEKISGVELILTKLHAGGKFS
                     NKNYTFSGGLHGVGISVVNALSERVEIQIKRGGEVYSIAFANGVKVEDLTVIGTCPKK
                     QTGTTVRFYPNPKYFDSPRFSVSRLRHLLRAKAVLCPKLTINFIDKINNTEESWYYED
                     GLSDYLSEALNGYETVPNPPFIGDVTAETEAVSWALTWLPEGGELVAESYVNLIPTAQ
                     GGTHVNGLRNGLLKAMVEFCEIHNLLPKGVKLTADDVWNRCAYVLSLKIQEPQFAGQT
                     KERLSSRQASSYVDSTLKDAFSLWLNQNVQTGKLIAEMAISSAQSRMRAAKKVVRKKL
                     VSGPALPGKLADCTAQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWE
                     VSSDQVLASQEVHDIAVALGIDPDSDNLEELRYGKVCILADADSDGLHIATLLCALFL
                     RHFPKLVQNGHVYVAMPPLYRIDIGKDEVHYALDEAEKEAILARLAKKKGKPNVQRFK
                     GLGEMNPSQLRETTMEPSTRRLVQLTFDDTVEEGELNTFEIMDMLLGKKRAEDRKQWL
                     QNRGDEADLAV"
     gene            2762..2986
                     /locus_tag="PXE26_000848"
     CDS             2762..2986
                     /locus_tag="PXE26_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDL5593452.1"
                     /translation="MVVKILKRKSQKTLQQIYTQPISANIKWTNIEALFLELGAEIEE
                     REGSRIAVVLFQQVRVFHRPHPNPDTDKGR"
     gene            3029..3358
                     /locus_tag="PXE26_000849"
     CDS             3029..3358
                     /locus_tag="PXE26_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDL5593453.1"
                     /translation="MRNIMDINGYKAVIAYDPETELFRGEFIGLNGGADFYADNVIQL
                     KKEGELSLNIFLELCREKGIEPFKQYSGKFNVRLSPELHKAAVIAATAENLSLNEWIN
                     QTLEKSV"
     gene            complement(3397..3783)
                     /gene="cueR"
                     /locus_tag="PXE26_000850"
     CDS             complement(3397..3783)
                     /gene="cueR"
                     /locus_tag="PXE26_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(I)-responsive transcriptional regulator"
                     /protein_id="HDL5593454.1"
                     /translation="MNISQAAEKTGLSAKQIRDYEKAGLLPPTSRTEAGYRFYNATDL
                     SRLHFISNARKVGFSLAQISELLKLNDNPNRSSRDVKQLTEQHIGELEQKIADLNQML
                     TLLKSWSSSCCGNANSECSILNGLNG"
     gene            3872..4072
                     /locus_tag="PXE26_000851"
     CDS             3872..4072
                     /locus_tag="PXE26_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDL5593455.1"
                     /translation="MTITLQLDGLHCGNCVKSVEKALNGVAGVNQVSVTLEPQIAVVE
                     GSAEAQALIEAVEDIGFDAKLA"
     gene            4125..6317
                     /locus_tag="PXE26_000852"
     CDS             4125..6317
                     /locus_tag="PXE26_000852"
                     /EC_number="3.6.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HDL5593456.1"
                     /translation="MTSTAHYSPEQQLLIDGMHCAACVRRVEKALLKVEKVEFASVNL
                     ADQTAFVQGNANPEALVAAVVKIGFGAEVLESEEERRIKQQAQTQRVLGHKRTQFMLA
                     LVVGFALVAFGFYKGMTVNETNRSLWLSWAGISLATMYFSGKDFFLGAFSALKNRSAN
                     MDMLVAISTGTAWLYSCWLTLFPQPNAHVYFEASVMILGFINLGKYLELKAKQRSSLA
                     LEKLLDLAPKQAVIFEENIAKTIPAKAIKPQMRVQALTGDRLAVDGILDSGSIWVDES
                     MLTGEALPVEKKIGDKVRAGTLVQDGSGTYIAEQVGSQTALARVINAVRHAQSSKPPL
                     AQFVDKIAAVFVPVVVSIALLSALIWLAVGQDFAFALSIFTTVLIIACPCALGLAIPL
                     STIAGVARSAEFGVLVRNIEALQASSEIDTLVFDKTGTLTTGRMEVSDVLTFNGFEQK
                     RLLQLAKSVEQHASHPIAKAIAKFAENQTACGVTDVQVLKGLGISAKYEGSTIRMGNW
                     QFVGETIQANLASLLPAKEGDFSSKIFVSVDNQLAGVLSVSDQLRPEAKATIHQFQAE
                     GYQCVMLTGDRQQTADYFANALGLDGVIAEVLPEQKAEKIRALQAEGKKVAMIGDGIN
                     DAPALAQANVGIAMHNGSDIAVETADLSLMREGLAPLMQILPFSKKVLKNMKQSLLGA
                     FIYNVIAIPIAAGVLYPFTGWLLNPMIAAIAMTLSSITVVLNSQRLLK"
     gene            complement(6370..7155)
                     /gene="truA"
                     /locus_tag="PXE26_000853"
     CDS             complement(6370..7155)
                     /gene="truA"
                     /locus_tag="PXE26_000853"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HDL5593457.1"
                     /translation="MKIALGIEYDGSRYFGWQRQEAVESVQQQLEQALSVVANSPVEV
                     FCAGRTDAGVHGTGQVVHFETQANRPLQSWCFGTNAHLPDDIAVKWAVAVNEDFHARF
                     SATARRYRYIIFNQKLRSAILPKGVTHFHFPLDERKMHQAGQYLLGENDFSSFRAAKC
                     QSNTPWRNIHHLNVSRQGNYVIVDIQANAFVHHMVRNIVGTLLEIGQGRQPVEWAKWV
                     LEQRDREKAAPTAKAEGLYLVEVHYPEHFGIPKTPLGPLFLAD"
     gene            complement(7220..7909)
                     /gene="folE"
                     /locus_tag="PXE26_000854"
     CDS             complement(7220..7909)
                     /gene="folE"
                     /locus_tag="PXE26_000854"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HDL5593458.1"
                     /translation="MTTISPELTITENTLSPEAQKVRQALLAKGIETPTVTHTKDKAS
                     RRAEIQQHMQAVLELLGLDLSDDSLEETPHRLAKMYVDEIFSGLDYATFPKITNIENR
                     MKVSEMVLVDDITLTSTCEHHFVTIDGKVAVAYYPKKWVIGLSKINRVVQFFAQRPQV
                     QERFTEQILTAFQTILETDDVAVYVKATHFCVKCRGIKDTNSYTVTSAFGGVFLEDRE
                     TRKEFLGLLNK"
     gene            8010..8717
                     /locus_tag="PXE26_000855"
     CDS             8010..8717
                     /locus_tag="PXE26_000855"
                     /EC_number="2.7.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid kinase"
                     /protein_id="HDL5593459.1"
                     /translation="MQNIQYLFNADLIPEHQAEFVQSLLTCKNFDNSDRLLGFSKGRG
                     TTWFLDTSAELGINVVLRHYYRGGLFGKIIKDSYFFTRFEATRAYKEFFLLQQMLAWG
                     LPVPRPVAIKIERHFCCYRADIMLEKLENTQDLSKILQSHSLSNEQYEQIGKLIRSLH
                     NHQIHHSDLNIHNILLGNDGKFCLIDFDKCGIEPGENWKQNNLDRLLRSFKKEQGRLN
                     IFFSEENWQAVLRGYTL"
     gene            complement(8772..9869)
                     /gene="apbC"
                     /locus_tag="PXE26_000856"
     CDS             complement(8772..9869)
                     /gene="apbC"
                     /locus_tag="PXE26_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HDL5593460.1"
                     /translation="MNQLNEQQLVEIKAILQQFSHPTLQKDLIALNAFKKAELGGDIL
                     RIEITMPFAWNSGFETLKAETEAKLKQVTGSSGVKWVLNYQIATLKRANKHPAVNGVK
                     NIIAVTSGKGGVGKSTTSVNLALALRAQGTRVGILDADIYGPSIPHMLGAKDQRPTSP
                     DNKHITPITAHGLQSNSIGYLMEEDNATIWRGPMASSALSQLLNETWWNELDYLVIDM
                     PPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAIKGISMFEKVSVPVLGVIENMSMH
                     ICSNCGHHEAIFGTGGAEKIAQKYGTKVLAQLPLHIRLREDLDSGVPTVVAAPEHEIS
                     QAYLALAEKVASELYWQGSVIPSEIMIREVK"
     gene            complement(9866..11413)
                     /locus_tag="PXE26_000857"
     CDS             complement(9866..11413)
                     /locus_tag="PXE26_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5593461.1"
                     /translation="MLKSLQAVTFVKKIAKVTACILLITSCDQLICPQSIQSVWVENR
                     QSDTLLKRAIYSAVFQLDPHKIKASADAAPLRDLLVGLTAYNRKGDVVPAIAQNWFTE
                     DEKEWLFILDEKAVWSNGQPVTAQDFVASWRRLIDPQNHSVLSKYLIYMGIENAKAIE
                     EQIKSVEELGVEALNAHTLRIRLNHPNHQLPEMLAHSALLPTYQGIAPTIDNFVSNAS
                     YRLEKLDAQKMVLKARTQEIPFQTIEYDLITTIQNCSAFDIVENPLLNKKTNIVKFPR
                     LCSYYYEFNFDDPLLAKREIREAIRTMVASANSGQEYGVPSQSVIPHSLVKDREKRWN
                     PVVVEQLLTKAGISPYNPLKLTLLYDENSINIANQVTRALSQSELFNITPKMVDWQTL
                     NKVREQKDYQIARAGWCADYPDPIVFLQKFHSMSPDNHSGYKSEIVDQKLNRLQTETL
                     SAEARESLIQEISEQLYSDVAVLPLFQYHHRVGIVSSLLGIDLNNDSEVIYSKDLKRN
                     LANKDNQ"
     gene            complement(11439..12089)
                     /locus_tag="PXE26_000858"
     CDS             complement(11439..12089)
                     /locus_tag="PXE26_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchE family NAAT transporter"
                     /protein_id="HDL5593462.1"
                     /translation="MDIIINFAIYLQFFIGLFAIVNPFGSLPIFFSMTAHQYEGERNR
                     TSLITAVSIGVILLVSLYFGNLILNAFSISLSSFRVAGGILIVSIAMTMISGKLGEHK
                     QNKEEKNEDITEYENIGVVPLAMPIMAGPGAIGSTIVWGTRYHTWEDYVGFSIAIIVF
                     ALICYILFRYSAPLVKKLGKTGSNVVTRIMGLILMALGIEIIVAGITTLFPVLLVK"
     gene            complement(12211..14082)
                     /locus_tag="PXE26_000859"
     CDS             complement(12211..14082)
                     /locus_tag="PXE26_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HDL5593463.1"
                     /translation="MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGLISQDNSVAKV
                     NGEEISQQLFNNTLNREQNRLNAELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQ
                     YAKELKLGISADQIKSEIVNSQMFQQDGKFSNELYQQTLRHNNLSADGYAAIVQEGML
                     QSQLQEGIINSDFNVPAQQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRAYYE
                     ANKTKLLAPEKLAVEYVTLSPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQ
                     VASEAEAQAIEQALKNGEDFATLAKNKSSDTLSANNGGDLGWAKAGTFPKAFEDAVAN
                     LTAGQMSAAVKVDNAYHIIKVLERKPEQVIELAQVKDKIAQTIRQELVLTEYFTVARE
                     MANKAFENNSSLEEVAKAGNVELQKTDLFTRENVPTALQNEKVLKVLFEGELRQNKQN
                     SDALDVGNDANPQTLFVRVSDYDAERPQTFDEAKAAVENFVKAEKAEKALLAKVEENV
                     KALNEGKSVDVKFNAPQTLVYMQAEVENPVLAGTIFAMKKAQDKTTYQMARNQKGDVV
                     IVALDNITEGNAEQFKTLAPQFEQANRLILRNEFLQSLRAKASIEVNEDFMQQRSSH"
     gene            14264..14533
                     /gene="rpsO"
                     /locus_tag="PXE26_000860"
     CDS             14264..14533
                     /gene="rpsO"
                     /locus_tag="PXE26_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HDL5593464.1"
                     /translation="MSLSVEAKAKIVAEFGRDAKDTGSSEVQIALLTAQINHLQAHFA
                     EHKKDHHGRRGLLRMVSRRRKLLDYLKRTDLAKYSETIARLGLRR"
     gene            14605..15474
                     /locus_tag="PXE26_000861"
     CDS             14605..15474
                     /locus_tag="PXE26_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 domain-containing protein"
                     /protein_id="HDL5593465.1"
                     /translation="MAFASLFTLLDDIAAVLDDVSIMTKVAAKKTAGVIGDDLALNAN
                     QVSGKNVVPERELPIVWAVAKGSLINKVILIPLALLLSVFLPQAIIPLLMIGGAYLCF
                     EGVEKLLHRLLHKNNQAHSDETETLSEKDKIKGAIRTDFILSAEIIIIALGVLQDSST
                     LTQILSLSAIGVGITLFVYGLVGLIVKLDDIGLWLMQKKSTFSQAVGKGLLFAMPWFM
                     KGLSVIGTIAMFLVGGGIFTHNLPMIHHFVEQFGISPHFSTLVDFAVGIVVGIIACLI
                     ILPLMKLFSKKAH"
     gene            complement(15564..16829)
                     /locus_tag="PXE26_000862"
     CDS             complement(15564..16829)
                     /locus_tag="PXE26_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis protein HemY"
                     /protein_id="HDL5593466.1"
                     /translation="MFRTLFLMLLLLVGLISGPYLAGNQGYVRIETATTVIEMSIVML
                     VVFFVLAMAVVYLLEWIVTKICRMSNGAYNWFSTRKHKKAQQETLEGLMRMSEGNYSK
                     AEKLFSKNAKHADEPVLNLIKAAEAAQQNGDDLAANKYLIKATEIAGPNNVAVELVRT
                     RILLQQGKLPAARTAIDSLLELAPHSDEVLRLAIQIYKESRAYVALDRLLVEIGQRNF
                     LTAEEYAELEYFVDDGLQDERLQEEGQEGLLSWWENQPNRRRKSVYSRVGVIKRLIDS
                     DDHQSAQEIALETLKKFEDEQLQGLFVQLTRLQIDSDSKLLKVLAKRADKANVKYTDD
                     YARALGYIYTRDGQYQKAKSQFELLLAHDECVADDRIMALHVAEQMGDTLMANRIREE
                     NLKQVNMATQSKVNEPLALPQTATESNSL"
     gene            complement(16848..18158)
                     /locus_tag="PXE26_000863"
     CDS             complement(16848..18158)
                     /locus_tag="PXE26_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HDL5593467.1"
                     /translation="MSRSKKVTEHLEHSAEKVVEEAQQAVDSAGSFAKKEIEEDVVNE
                     AIEKDIQTEMQKAPKEQVVVQKSGGKGLALVALLVALAVGGAGHYMANKKFAEVESQI
                     QAVSAKANQPTTQTMVEMPNFENEKAQIAELVTEYQKALERIKALETAQNGYTQQISS
                     LQLQLQKLNNTSGSDNTFWLLSEADFLLNNAARKVVLDNDIETVKNLLLEADQVLSKA
                     PNTIHIREAIKTDLNTLTALHQIDQNALMQRVANLANKLDDLPILESEQASNSKQDGQ
                     VSDSLADWEKNLEKSAASFLDHFIRVSKRNAADEKAFVAPNQEIYLRENIRLRLQIAI
                     LAVPRQQSELYKKSLQTVGSWVRSYFETSNENVQHFLKELDELAEQTIYVDAPTSLQS
                     LKVIAQQLNKTPEKIEKVEIKAEKELEQAEPVKAEQDAMPLSAQ"
     gene            complement(18170..18934)
                     /locus_tag="PXE26_000864"
     CDS             complement(18170..18934)
                     /locus_tag="PXE26_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HDL5593468.1"
                     /translation="MNVLVTRLDSRGQELVDMLNEQQIFAIHQPLFTIEAGKELPLLP
                     SAISRLKSDDYVFVVSPNAVDYAAKTLVDTGFHFRSDLKYFAVGQRTAKYLTEKAEQA
                     VIYPIEFENSEGVLALPEMQNLTDKTILILRADSGRELLAETAVLRGATIQYLECYRR
                     EPVTDDIPEKISLCKRLGVDTIVITSSEILRSLYEQAKADCRAWLFECDLVVVSRRIA
                     KIAKQMGWQEDKIRVSDKADNVTLMNTLLFKVGKSN"
     gene            complement(18934..19869)
                     /gene="hemC"
                     /locus_tag="PXE26_000865"
     CDS             complement(18934..19869)
                     /gene="hemC"
                     /locus_tag="PXE26_000865"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HDL5593469.1"
                     /translation="MKDILRIATRQSPLALWQANFVKSELEKHFPQLSVELVTMVTKG
                     DIILDTPLAKIGGKGLFVKELELALLENRADIAVHSMKDVPMSFPEGLGLAVICERED
                     PRDAFVSNNYHSLEDLPKGAVVGTSSLRRQCQLMAKYPHLEVKSLRGNVGTRLSKLDN
                     GEYDAIILASAGLIRLGLQERIRSYISVEQSLPAAGQGAVGIETRANDERILNYIAKL
                     NHSSTACCVMAERAMNTRLQGGCQVPIGGYATLEGDELTLNALVGSLDGSQIIRASAK
                     GHKQEAEQLGILVAEQLLAQGADKILAAVYNENVQ"
BASE COUNT         5611 a         4401 c         3786 g         6178 t
ORIGIN      
        1 gcctatttgc tcggctcgat ttccagtgcg gtcatttttt gtaagctggc aggcttgcct
       61 gacccaagag aagtcggctc acacaatgcc ggtgcaacga acgtactacg aattggcggt
      121 aaaagtgccg cattaggtgt gcttttattc gatattttaa aaggcacatt accggtggcg
      181 atggggattt attttgaact ctctccctca caactcggtt tcatcgcctt agcggtttgt
      241 cttgggcata ttttcccgat tttcttccaa ttccgtggcg gaaaaggcgt tgccaccgca
      301 tttggtgcaa tctccgcatt aagctttatt gttgcaggcg gtgctatcgg cacttggcta
      361 ctggtgtttt taatctccgg ctattcttct ttaagtgccg tcttcactgc cttggtcgta
      421 ccgttttaca tttggtggtt cgagccacaa tttactttcc ccgtcgcctt agtttgttgc
      481 ctattggttt accgccatca cgataatatt caacgcttat ggcgtgggca ggaagacaaa
      541 ctgtgggata aattcaagaa aaatagagca taaaaatagg catagtgaac cgttcgctat
      601 gcctatttgc aaattattgc ggaaaaatca ccgcttgtct tctcgactaa accgctaaat
      661 ctgcttcatc tcctcgattt tgtagccatt gtttacgatc ttccgctcgt tttttaccca
      721 atagcatatc cataatttca aaggtattca attcgccctc ttctaccgtg tcatcaaagg
      781 ttaattgtac taagcggcga gtgcttggct ccatcgtagt ttcacgcaac tggctcgggt
      841 tcatttcgcc taagccttta aagcgttgca catttggctt tccttttttc ttggcaaggc
      901 gagctaaaat cgcctctttt tccgcctcat ctaaggcata atgcacctca tctttgccga
      961 tatcaatgcg ataaagtggt ggcattgcca cataaacgtg tccgttttgc accaatttcg
     1021 ggaaatgacg aaggaataac gcacacagca aggtggcaat atgcaaaccg tctgaatccg
     1081 catcggcaag aatacaaact ttgccataac gcaactcttc taaattatcg ctatcagggt
     1141 caattcccaa ggctaccgca atatcgtgta cttcttgtga agccaatact tggtctgatg
     1201 aaacctccca agtgtttaaa atcttaccac gcagtggcaa aatggcttga tactctttat
     1261 ctcgagcttg ttttgccgaa ccgccggcag aatcaccttc taccaagaaa agttcggtac
     1321 ggctgagatc ttgagctgta caatccgcca gtttgcccgg taaagccgga ccactcacca
     1381 atttcttacg caccactttt ttcgccgcac gcatacggct ctgggcggaa ctaattgcca
     1441 tttcagcaat taatttacct gtctgcacat tttggttaag ccataaacta aaggcatctt
     1501 tcaaggtgct atccacatag cttgaggctt gacgggaaga caaacgctct ttggtctgcc
     1561 ctgcaaattg tggctcttga attttcagag aaagcacata agcacaacgg ttccacacat
     1621 catcagcggt taattttacc cctttcggca ataaattatg gatttcgcaa aactccacca
     1681 tcgcctttaa taaaccgtta cgcaagccat taacgtgcgt gccgccttgt gcggtcggaa
     1741 tcaggttcac atagctttcc gctactaact cgcccccttc cggcaaccaa gttaatgccc
     1801 agcttaccgc ctctgtttca gcagtaacat caccaataaa cggtggattc ggcacggttt
     1861 cataaccgtt taatgcctcg ctcaaataat cagataagcc gtcttcgtaa taccaacttt
     1921 cttcggtatt gttgatttta tcaataaaat tgatggtgag tttcgggcaa agcaccgctt
     1981 tggctcgtaa caaatggcgt aaacgactca ccgaaaaacg agggctatca aaatattttg
     2041 ggttcgggta aaaacgcact gtcgtgccgg tctgtttttt cgggcaagta ccaattaccg
     2101 tcagatcttc cacttttacc ccgttggcaa aggcaatcga atagacttct ccgccacgtt
     2161 taatctgaat ttcaacccgt tcggacaggg catttaccac cgaaatcccc accccgtgca
     2221 aaccaccgga aaacgtatag tttttattgg aaaatttacc gccggcgtgc aatttcgtta
     2281 agataagctc cacccctgaa attttctcgg tggaatgaat atcgaccggc attccccgcc
     2341 cgttatccac cacttccaac gaattatcag catgaagaat cacatcaatt ttatctgcaa
     2401 agccggacaa cgcctcatcg acactattat caatcacctc ctgccccaaa tggtttggac
     2461 gtgtggtatc cgtgtacatt cccgggcgaa gctgcaccgg ctcgaggtct ttcagaacgg
     2521 taatttcatc cgccccatag cgtttttcag acattatgct ttctcttagg cttaaaataa
     2581 aataaggctg aattttaagg aatattcagc tattttgcaa aattttggtg aaaaatgacc
     2641 tgttgttatg caataaaaac tatttttgcg atctacatcg aaaaaatgag ttttaatttc
     2701 cctatttgct tattcattca gtatcttaat ctcacttttt attttaaaat ggtactatat
     2761 tatggtagta aaaatcctaa agcggaaatc tcaaaagaca ctacaacaaa tctacaccca
     2821 gcctatttct gccaatatta aatggacaaa tatagaagct ctttttctag agttaggagc
     2881 agaaatagaa gaacgagaag ggagcagaat tgcagttgtt ttatttcaac aggtcagagt
     2941 atttcatcgc ccacacccga atcctgatac agataagggg cggtagcgag tattaaaaaa
     3001 tggttatctg aaaacggagt cattccttat gcgtaatatt atggatatta atggttataa
     3061 agctgtcatt gcttacgatc ccgaaacaga attatttcga ggtgaattta tcggattaaa
     3121 tggtggagcc gatttttatg ccgataatgt cattcaatta aaaaaagaag gtgaactaag
     3181 tttgaatatc tttttagaac tttgtagaga aaaaggtatt gagccgttca aacaatattc
     3241 cggaaagttt aatgttcgcc tttcgcctga attacataaa gctgcggtaa ttgcagcaac
     3301 tgctgaaaat ttaagcttaa atgaatggat taaccaaacg ttagaaaaga gcgtgtagcc
     3361 taattgcaaa acaatcacct attttgaccg cttgtattac ccgtttaacc cattcaatat
     3421 cgaacactcc gaattggcgt tgccacagca agagctactc cagcttttga gcaaagtcag
     3481 catttggttt aaatcggcaa ttttttgttc aagctcaccg atatgctgtt cggttaattg
     3541 ttttacatct cggcttgagc ggtttgggtt gtcgtttaat ttaagtagtt cgctgatttg
     3601 agccagcgaa aagcccactt ttcgggcatt gctgataaaa tgtaatcggc tcaaatcagt
     3661 agcattgtag aatcgatacc ccgcttcggt gcgacttgtc ggcggcagaa gtcctgcttt
     3721 ttcataatct cggatttgtt tggcggaaag cccggttttt tctgcggctt ggctaatatt
     3781 cattataatc ctctcacttt aatcgcttga ccttaaccta aggttaagct ttattatacg
     3841 cctgaataat cactcaaaac aggagaaaat gatgacaatt accctacaac ttgatggctt
     3901 acattgtggc aactgtgtga aaagtgtcga aaaagcgtta aatggcgtgg ctggggtgaa
     3961 ccaagttagc gtaacgttag aaccgcaaat tgctgtggtg gaaggctcag cagaagcaca
     4021 agccttaatt gaagcggttg aagacattgg ctttgacgca aaattagcct aattaataag
     4081 gggcagaaat tttgccctaa tctgcccaat atttcggagg ataaatgaca agcacagctc
     4141 actattcgcc agaacaacaa cttttgattg atggaatgca ctgtgccgcc tgtgttcggc
     4201 gagtggaaaa agccttactt aaagtggaaa aggtggaatt tgcctcagtc aatcttgccg
     4261 atcaaaccgc ttttgtgcaa ggcaacgcca accctgaagc cttggtagca gcggtagtta
     4321 aaatcggttt tggggcagaa gtgctggaaa gcgaggaaga acgccgaatt aaacaacaag
     4381 cccaaacgca acgagtgtta gggcataaac gcactcaatt tatgcttgcc cttgtagttg
     4441 gttttgcctt agttgctttt gggttctaca aaggaatgac ggtaaacgaa accaatcgtt
     4501 cgctttggct cagctgggca ggtattagcc ttgcgacaat gtatttttca ggtaaagatt
     4561 tctttcttgg ggcattttca gcactgaaaa accgctcagc caatatggac atgttagtag
     4621 caatcagcac cggcacggct tggctctatt cttgttggct cacgcttttc ccacaaccga
     4681 atgctcacgt ttattttgaa gccagcgtga tgattctcgg ctttatcaat ctaggaaaat
     4741 acttagaact gaaagccaaa cagcgttcct cgctagcatt ggaaaaattg ctggatctcg
     4801 ccccaaaaca agcggtcatt tttgaagaaa atattgcaaa aaccattccg gctaaagcaa
     4861 ttaagccaca aatgcgggtg caagccttaa ccggtgaccg cttggcggtt gatggtattt
     4921 tagacagtgg ctctatttgg gttgatgaat caatgctcac cggtgaagcc ctacctgtag
     4981 agaaaaaaat cggtgataaa gtgcgagccg gcactctggt gcaagacggt tcaggcactt
     5041 acattgccga acaggtcggc tcacaaaccg ctttggctcg tgtaatcaat gccgttcgcc
     5101 acgcccaaag cagcaaaccg ccattggcac agtttgtaga taaaatcgcc gctgtttttg
     5161 tgccggtggt ggtttcaatc gcattacttt ctgcgttaat ttggctggca gttgggcagg
     5221 attttgcctt tgcactctcg atttttacta ccgtgttgat catcgcttgc ccttgtgcat
     5281 tggggctggc aattccgctt tctaccattg ccggcgtggc acgttctgcc gaatttggcg
     5341 tgctggtgcg aaatattgag gcactacaag caagcagtga aatcgacacc ctagtgttcg
     5401 ataaaaccgg cacactcacc actggcagaa tggaagtgtc ggatgttctc acctttaacg
     5461 gatttgagca aaagcgcttg ctacaacttg ctaaaagtgt agagcaacac gcctcacacc
     5521 cgattgcgaa agcgattgca aaatttgccg aaaatcagac cgcttgtggt gtaaccgatg
     5581 tgcaagtgtt gaaagggtta ggcatttcag caaaatatga aggcagtaca atcagaatgg
     5641 gaaattggca atttgtaggc gaaaccattc aagcaaatct tgcctcccta ttgcccgcta
     5701 aagaggggga tttttcctca aaaatttttg tttcggtgga taatcaactc gccggtgtat
     5761 tgtcggtttc agaccaactt cgccctgaag cgaaagcaac cattcatcaa ttccaagcgg
     5821 aaggctatca atgcgtgatg ctgaccggtg atcgccaaca aactgccgac tatttcgcca
     5881 acgcattggg gttagacggc gtgattgcgg aggtattacc ggagcaaaaa gcggaaaaaa
     5941 ttcgagcctt gcaagcagag ggtaaaaaag tagcaatgat tggcgacggc ataaacgatg
     6001 ctccagctct ggctcaagcc aatgtgggca ttgcgatgca caatggttca gatattgcag
     6061 tggaaaccgc cgatctttcg ctgatgcgag aagggctagc accactgatg caaattctac
     6121 cgttctctaa aaaagtgctg aaaaatatga agcaaagttt gctcggggct tttatctata
     6181 atgttattgc gattcctatt gctgccggcg tgctttaccc tttcaccggc tggctactca
     6241 acccaatgat tgccgccatt gcgatgacat tgtcgtcaat taccgtggtg ttaaatagtc
     6301 aaaggttgtt gaaataattt aagcggtcaa atttgcatat ttttttgcaa atttgaccgc
     6361 ttgtaatcac taatccgcca aaaacagcgg cccaagaggt gttttcggaa tgccaaaatg
     6421 ctcagggtaa tgcacctcga ccaaatatag cccctcggct ttcgctgtag gggcagcttt
     6481 ttcccggtca cgttgctcca acacccattt tgcccattcc acaggctgtc tgccttgccc
     6541 gatttcgagc aatgttccca caatattgcg aaccatatga tgtacaaagg cgttggcttg
     6601 aatatcaaca atcacataat tgccttgccg agacacattt aaatgatgaa tattccgcca
     6661 cggcgtatta gattggcatt tggcggcacg gaaagaggaa aagtcattct cgcccagcaa
     6721 atactgccct gcttggtgca ttttgcgttc atcaagggga aagtgaaagt gggtaacacc
     6781 tttaggtaaa attgccgacc gcagtttttg gttaaaaata atatagcggt aacggcgggc
     6841 ggtggcacta aaacgggcgt gaaaatcctc attcaccgct accgcccatt tcaccgcaat
     6901 atcatcgggt aaatgagcgt tagtgccgaa acaccagctt tgtagcgggc ggtttgcttg
     6961 cgtttcaaaa tgcacgacct gccctgtgcc gtgcacaccg gcatcggttc tgccggcaca
     7021 aaacacttct acgggcgaat tggcaacaac cgacaacgcc tgctctagct gttgttgtac
     7081 actctctacc gcttcttgtc gttgccagcc aaaataacgg ctgccgtcat attcaatacc
     7141 taatgcgatt ttcattttaa taccttgata aaaagagggg cgaaaaattt ttcgccccca
     7201 cagtaattga tatttgcaat tatttattca ataagcctaa aaattctttg cgggtttctc
     7261 ggtcttctaa gaaaacaccg ccaaaggcag aagtaactgt atagctattg gtgtctttta
     7321 tgccacggca tttcacgcaa aaatgggtgg ctttcacata caccgcaaca tcgtctgttt
     7381 ctaaaatagt ttgaaaggca gttaaaatct gttcggtaaa acgctcttgc acctgcggac
     7441 gttgggcaaa aaactgcacg acacggttga ttttcgagag tccaatcacc cattttttcg
     7501 ggtaataggc taccgctact ttgccgtcaa tagtaacaaa atgatgctca caggtagaag
     7561 ttaaagtaat atcgtccacc agcaccattt cactgacttt cattcggttt tcaatattgg
     7621 taattttcgg gaaggtagca taatcaagcc cgctgaaaat ttcatcaaca tacattttcg
     7681 ccaaacgatg aggcgtttct tctaagctgt catcacttaa atctaaaccg agcaattcta
     7741 aaactgcctg catatgctgc tggatttctg ctcggcgact ggctttatct ttggtatgag
     7801 taacagtcgg agtttcaatg ccttttgcca acaaggcttg gcgaactttt tgagcctccg
     7861 gcgaaagcgt gttttctgtg atagttaatt cgggcgagat cgttgtcatt ggttttcctc
     7921 tcaaatgtaa gctgaagatt ctaacaaatt gacatcaaaa aaaatagctc taaaatgagc
     7981 tatttcagcc ataaacaccc tctttattta tgcaaaatat acagtatctc tttaatgccg
     8041 acctgattcc cgaacatcaa gctgaatttg tgcagtctct cttaacttgc aaaaattttg
     8101 acaattccga ccgcttgcta ggcttctcaa aagggcgagg tacgacttgg tttttagata
     8161 cctctgctga actaggtatc aatgtggtgc ttcgccatta ttatcgtggc ggcttgttcg
     8221 gtaaaatcat caaagatagt tactttttta ctcgctttga ggccacccga gcgtataaag
     8281 aatttttctt actgcaacaa atgttagctt ggggtttacc tgtgcctcgc cctgtggcga
     8341 ttaaaataga aagacatttt tgttgctatc gtgccgacat tatgctcgaa aagctagaaa
     8401 acacacaaga tttaagcaaa atcttgcaat cccattcttt atcgaacgaa caatatgagc
     8461 agatagggaa actgattcgc agtctgcata accatcaaat tcaccattcc gacttaaata
     8521 tccataatat tttgcttggt aatgatggca aattttgtct gattgatttt gataaatgcg
     8581 gcattgagcc gggcgaaaat tggaagcaaa ataacctaga ccgcctgtta cgctcgttta
     8641 agaaagaaca agggcgatta aatattttct tcagcgaaga aaattggcag gctgttttga
     8701 gaggatatac tctctaagaa acaataatgg cacaagctta gaaacttgtg ccatcaaatc
     8761 atcaatatta actacttcac ttcacgaatc ataatttcag acggaatcac actgccttgc
     8821 cagtaaagtt cagaagctac tttttccgct aatgcgaggt aggcttggct gatttcgtgt
     8881 tccggagctg ccaccaccgt tggcacaccg ctatctaaat cttcacgcag acgaatatgt
     8941 agtggtaatt gtgctaacac tttagtgcca tatttttggg cgattttttc cgctccgccg
     9001 gtgccgaaaa ttgcctcatg gtgtccgcag tttgagcaga tatgcattga catattttca
     9061 atcaccccaa gcactggtac tgagactttc tcaaacattg agatcccttt aatcgcatct
     9121 aataaggcaa tatcttgtgg ggttgttact accaccgcac cggtcaccgg aatttgctgt
     9181 gaaagcgtaa gctgaatatc acccgtaccc ggtggcatat caatgaccaa gtaatccaat
     9241 tcattccacc aagtttcatt taaaagctga cttaacgcac tgcttgccat cgggccacgc
     9301 caaatggtgg cgttatcttc ttccattaaa tagccgatag aattagattg caagccgtga
     9361 gcggtaatcg gcgtgatgtg cttgttatca ggagaagttg gacgttggtc ttttgctccc
     9421 aacatatgcg gaatagatgg gccgtaaata tccgcatcta aaatccccac tcttgtccct
     9481 tgtgctcgta aggctaaagc aagattaact gaggtcgttg atttccctac cccacctttt
     9541 cctgaagtga ccgcaatgat attttttacc ccattgactg ccgggtgttt attcgcccgt
     9601 tttaaggtcg caatttggta atttaatacc cattttacac cgcttgaacc tgttacttgc
     9661 tttaatttag cctctgtttc ggcttttaag gtttcaaaac cactgttcca cgcaaatggc
     9721 atcgtgattt caattctaag aatatcgccc cctaattctg cttttttaaa cgcattaagg
     9781 gcaattaaat ctttctgtaa agtcgggtgg gaaaattgtt gcaagattgc tttaatttca
     9841 acaagttgct gttcatttaa ttggttcatt ggttatcctt gtttgctaaa ttgcgtttta
     9901 aatctttgct ataaattact tcgctatcgt tattcaaatc aatacccaaa agggaggaaa
     9961 caatcccaac ccgatgatgg tattgaaata atggcaatac ggcaacatcg ctataaagct
    10021 gctcgctaat ttcttgaata agtgactctc tcgcttctgc actaagcgtt tctgtttgta
    10081 aacgatttaa tttttgatcg actatctcac ttttatagcc ggaatgatta tccgggctca
    10141 ttgaatgaaa cttctgcaaa aatacaatcg gatcaggata atctgcacac cagcctgctc
    10201 gtgctatctg gtaatctttt tgttccctta ctttatttaa agtctgccaa tcaaccattt
    10261 taggtgtaat attaaataat tctgattgag aaagggctcg agtaacttgg ttagcaatat
    10321 taatgctatt ctcatcatat aacaaagtca gctttaaagg attataaggg ctaattcctg
    10381 cttttgttaa tagctgctca accacaacag gattccaacg cttttctcta tcttttacta
    10441 agctatgtgg aattacagac tgactcggaa ccccatattc ttgcccacta tttgctgaag
    10501 ccaccattgt ccttattgct tcacgaatct ctcgtttagc taataatgga tcatcaaaat
    10561 tgaactcata gtaataagag cacaaacgcg gaaatttcac gatattcgtt tttttattta
    10621 ataaaggatt ctcgacaata tcaaaagcag agcagttttg gatagttgta attaaatcat
    10681 actctatagt ttgaaaggga atttcttggg ttcgagcctt taacaccatt ttttgagcat
    10741 ctagtttctc gagacggtaa gacgcattgc tcacgaagtt atctatggtt ggagcaatcc
    10801 cttgataagt aggtaataat gcggaatgtg ccagcatttc aggcaattgg tgatttgggt
    10861 gatttagccg aattctcaat gtatgcgcat ttaatgcctc tacaccgagt tcttcaactg
    10921 actttatttg ctcttcaatc gcttttgcat tttctatacc catatagatg agatatttag
    10981 acaatacaga atgattttga ggatctatta aacgtcgcca gcttgctaca aaatcttgtg
    11041 cagtcacagg ttggccatta gaccacacag ctttctcatc taaaataaac aaccactctt
    11101 tttcatcttc agtaaaccaa ttctgagcaa tggccggaac gacatcacct tttctgttgt
    11161 aggccgttaa accgactaat agatctctta aaggagcagc atctgcagaa gctttaattt
    11221 tatgtgggtc gagttgaaat acagcagaat aaattgcacg tttgagtaaa gtatcactct
    11281 gccggttttc tacccagaca gattgaatgg attgagggca aattaattga tcacaagatg
    11341 taataagcag aatgcaagcg gtaacttttg caattttttt tacaaatgta accgcttgta
    11401 aggatttcaa cataaactcc ccaaaggtta attaagattt attttacaag aagcacagga
    11461 aataaagttg taattcctgc cacaataatt tcaattccca gcgccattaa aatcagcccc
    11521 atgatacgag taacgacatt agatcctgtt ttgcctaatt ttttcaccaa aggggctgaa
    11581 tagcggaata aaatataaca aattaatgca aatacaataa tcgcaatgct aaagccaaca
    11641 tagtcttccc aagtatggta gcgggttccc cacacaatgg ttgagccaat tgcccctggt
    11701 cctgccataa tcggcattgc taatggcacg acaccgatat tttcgtattc agtaatatct
    11761 tcatttttct cttctttatt ttgtttgtgt tcacctaatt taccgctaat catcgtcatc
    11821 gcaatgctta caatcaaaat gccaccagct actctaaaag agctaagtga aatgctaaac
    11881 gcattgagaa tcagattacc aaaatagagg ctgactaata aaattactcc aatagaaaca
    11941 gcggtgatta agctggtgcg atttctttcc ccctcatatt ggtgagcggt catactgaaa
    12001 aaaataggca aggaaccaaa aggattgact atagcaaata gaccaatgaa gaattggagg
    12061 tagatggcaa aattaataat gatatccaca aaaactttct caaacaacag tgtttcgggc
    12121 gctattatat cggttaatca aggtagatac aaaccaaaag cacccagcct aaaggacggt
    12181 tgggtgcttt ttgataaaat gaaaggcttg ttagtgtgac gaacgttgct gcataaaatc
    12241 ttcatttacc tcaattgaag cttttgcacg tagcgattgt aagaattcat tacgtaaaat
    12301 taaacgatta gcttgttcaa attgtggcgc caatgtctta aactgttcag cattcccttc
    12361 cgtaatgtta tctaaggcaa caataactac atcgcccttt tgattacgtg ccatttgata
    12421 agtcgtttta tcttgcgcct ttttcattgc gaaaatcgtt ccagccaata ccgggttttc
    12481 tacttctgct tgcatataaa ctaaagtttg tggcgcatta aatttcacgt ccactgattt
    12541 cccttcattc aaggctttta cattttcttc tactttcgcc agcaacgctt tttccgcttt
    12601 ttctgccttc acaaaatttt caactgctgc ttttgcttca tcaaaagttt gtggacgttc
    12661 tgcatcataa tcactcactc tcacaaacaa tgtctgtgga tttgcatcat tcccaacatc
    12721 taaagcatca gaattttgtt tattttggcg tagctctcct tcaaacaaaa cttttaatac
    12781 tttctcattt tgtaaagcag taggtacgtt ttcacgggta aacagatccg ttttttgcag
    12841 ttccacatta ccggctttcg caacttcttc aagtgaagaa ttattctcaa aggctttatt
    12901 tgccatttcg cgcgcaactg taaaatactc agttaacact aattcttggc gaatagtttg
    12961 ggcaatttta tctttcactt gtgctaactc aatcacttgc tcaggtttac gctccaatac
    13021 tttgatgata tggtaagcat tatccacttt caccgctgca ctcatctggc cggcagttaa
    13081 atttgctaca gcatcttcaa aagctttcgg gaaagtgcca gcttttgccc aacctagatc
    13141 accaccatta tttgctgata aagtatcgct agatttgttt tttgccaaag tagcaaaatc
    13201 ttccccattt ttgagcgctt gctcaatagc ctgtgcttcc gcttcactag cgacttgaat
    13261 atgagctaaa tgggcttcac ctttagttac ataatcggct ttattgcgat catagtaagt
    13321 ttgaatttgc tcattggtaa tctcaacttt gctttccaca tcttttggag aaagagtaac
    13381 gtactcaacc gctaattttt caggtgctaa taatttagtt ttatttgctt cgtaataggc
    13441 tcgcaattct tgctcggaag cggtctgatt ttccatttct tttgcaactg aaaattcggc
    13501 taaacgcact tcacgttgtt gcaacagtaa ttttgctaac aatgcctgct gtgccggtac
    13561 attaaaatca ctattgataa tcccctcttg tagctgggat tgcaacatac cttcctgcac
    13621 aatcgctgca tagccatcgg cacttaaatt attgtggcgt aatgtttgtt ggtataactc
    13681 gttactgaat ttaccatctt gttgaaacat ctggctgttt acaatttcag atttgatttg
    13741 atcagcacta atacctagtt ttaactcttt tgcatactgg cgcagaagct cttcatcaat
    13801 taatccattt aataccgatt gattaaattg agcagcatac tccgggctat ccattaaatc
    13861 ccaaaagcga ctccccagtt cagcatttaa tctattttgc tcacgattaa gcgtgttatt
    13921 aaataattgc tgactaattt cttccccatt tactttcgct acagaattat cttgtgaaat
    13981 caatcctgtc ccaattccac cgattacaaa tgaaatagag actaatgcaa aaataatttt
    14041 aaagaccggc ccatttgtcc gctcgtgcat tttttcaatc atttaaaaat tcctaaatta
    14101 ctcaaaaatt gtcgctgatt atactctttc tcaaatgaga aataaacttg caaattttta
    14161 ttgaaattta accgctttct ctttaaaatt cacagtccct gtcgtagctg agttagagat
    14221 cggctattga tgtattatca acccttaaca aaaggaaatt aaaatgtctc taagcgtaga
    14281 agcaaaagca aaaatcgttg ctgaatttgg tcgtgatgca aaagacactg gttcttctga
    14341 agttcaaatt gcattattaa ctgcacaaat caaccactta caagcacact ttgctgagca
    14401 taaaaaagat caccacggtc gtcgtggttt attacgtatg gtttcacgcc gtcgtaaatt
    14461 attagactac ttaaaacgta ctgatcttgc taaatattcg gaaactatcg cacgtttagg
    14521 tttacgtcgc taatttcaaa tattagatat gagagccgag ctgaaaagtt cggctttttt
    14581 ataaatttta ttcgaggaaa aaatatggct tttgcgtcat tatttacatt attagacgat
    14641 attgctgccg tgcttgatga tgtatcgatc atgactaaag tggctgctaa gaaaacagca
    14701 ggcgtaatcg gtgatgatct tgccttaaat gctaatcaag tcagtggaaa gaatgtggtg
    14761 ccagaacgag aactaccgat tgtttgggct gtagcgaaag gctcattaat caataaagtg
    14821 atcttgattc cactagcgtt gctgctatcg gtctttttac cgcaggctat tatcccgcta
    14881 ttaatgatag gcggtgcata tttatgtttt gaaggcgtag agaaattact ccatcgtcta
    14941 ttacataaaa acaatcaagc tcattctgat gaaaccgaaa ccctttctga aaaagataaa
    15001 attaaaggtg caattcgcac cgattttatt ctatcagcag agattatcat tattgcgtta
    15061 ggtgttttgc aagactcttc aaccctaacc caaattttat ctctctccgc tatcggggtc
    15121 ggaattaccc tgtttgttta tggcttagtt ggattaattg taaaactaga tgatatcggt
    15181 ttatggttaa tgcagaaaaa aagcacattc tcacaagcgg ttggaaaagg cttattattt
    15241 gcaatgccgt ggtttatgaa aggactttct gtgattggta ctattgcgat gttcttagtc
    15301 ggtggtggta tttttaccca taatttacca atgattcatc acttcgtaga acaattcggt
    15361 atctctcccc atttttctac tctggttgat tttgcagtgg gtattgtggt tggtattatt
    15421 gcatgcttaa ttattttacc tttgatgaaa ttattttcta aaaaggcgca ctaatcccca
    15481 aaagcgtagc tttggttaaa gctagctttt tatctcttgc tataaaaaaa tagcaggttt
    15541 caagcctgct atttttttaa ttattataat gagttagact cagtggctgt ttgcggtaag
    15601 gctaatggct cattaacttt agactgagta gccatattca cctgtttgag attttcctca
    15661 cgaatacggt ttgccattaa tgtatccccc atctgctctg ccacgtgcag tgccataata
    15721 cgatcatcag caacacattc atcatgagcc aataacaatt caaactgaga cttcgctttt
    15781 tggtattgcc catctcgtgt ataaatatag ccaagcgctc tagcataatc atcggtatat
    15841 ttaacattcg ctttatctgc ccgttttgct aatactttta gtagcttact gtcagaatca
    15901 atttgtaaac gggttaattg cacaaataaa ccttgtaatt gctcatcttc aaatttcttc
    15961 aacgtttcta aagcaatttc ttgtgcagat tgatgatcgt cactatcaat taaacgcttg
    16021 atgacaccga cacgactata caccgattta cgacgacgat ttggttggtt ttcccaccaa
    16081 gaaagcaagc cttcctgccc ttcttcctgt aaacgctcat cttgtaaacc atcatcaacg
    16141 aaatactcta actcagcata ctcttctgca gttaagaaat tacgttggcc gatttcaact
    16201 aataatctat ctaacgcaac ataagctctg gattctttat aaatttgaat cgctaagcgt
    16261 aatacctcat cgctatgagg tgcaagctct agtaggctat caatcgcagt tcgggcagcc
    16321 ggtaattttc cttgttgtaa taaaattcgg gttcgtacca actccactgc aacattattc
    16381 ggtccagcta tttcagttgc cttaattaaa tatttatttg cagctaaatc atcaccattt
    16441 tgctgagcag cttccgccgc tttaattaaa ttcagtacag gctcatctgc atgttttgca
    16501 tttttactaa agagtttttc cgcttttgag taattccctt cactcatacg cattaaacct
    16561 tccagtgttt cttgctgagc ttttttatgc ttacgagttg agaaccagtt ataagctcca
    16621 ttactcatac ggcatatttt agtgacaatc cattcaagta aataaactac cgccattgcc
    16681 aacacaaaaa aaaccacaag cattacaatg ctcatttcaa tcacggtagt tgctgtttca
    16741 attctgacat aaccttgatt tccggctaaa taaggcccag agattagtcc aactaataat
    16801 aaaagcatca aaaagagcgt tctaaacata atctattctc ctttttatta ttgtgctgaa
    16861 agaggcatcg catcttgctc tgcttttaca ggctctgctt gctctaattc tttttcagct
    16921 tttatttcga ctttctctat tttttcaggg gttttattaa gttgctgagc aatcaccttt
    16981 aagctttgta atgaagttgg agcatccaca taaatagttt gttctgccaa ctcatctagc
    17041 tctttcaaga aatgttgcac attttcattt gaagtttcaa aataacttct tacccaagag
    17101 cctaccgttt gtaacgattt tttataaagt tcgctttgct ggcgaggaac agctaaaatc
    17161 gcaatttgta aacgcaagcg aatgttttca cgcaaataaa tttcttgatt cggtgcaaca
    17221 aaggctttct catctgctgc attacgtttc gatacacgaa taaaatgatc taaaaatgaa
    17281 gcagcacttt tttctaaatt tttctcccaa tccgcaagag aatcacttac ttgcccatct
    17341 tgtttgctat ttgaagcttg ttcactttcc aaaatcggca aatcatctaa tttattcgct
    17401 aaatttgcga cacgctgcat taaggcattt tgatcgatct gatgcaatgc ggttaatgta
    17461 tttaaatcag ttttgattgc ctcacgaatg tgaatcgtat tcggtgcttt tgataaaact
    17521 tgatctgcct ctaacaataa atttttcact gtttcaatgt cattatctaa caccacttta
    17581 cgagccgcat tattcaatag gaaatctgcc tcagataata gccagaatgt gttatccgaa
    17641 ccagaggtat tatttagctt ttgcagttga agctgcaaac tactaatttg ctgggtataa
    17701 ccattttggg ctgtttctaa agctttaatc cgttctaaag ctttttgata ttccgtgacc
    17761 aattcggcaa tttgtgcttt ttcattttcg aaatttggca tctcaaccat agtttgagta
    17821 gtaggctgat ttgctttagc agatactgcc tgaatttgag attcaacctc tgcaaacttt
    17881 ttatttgcca tataatgacc agctccgcca accgctaaag ccactaatag tgcaactaat
    17941 gccaagccct ttccgcccga tttttgaaca accacttgtt cttttggcgc tttttgcatt
    18001 tctgtttgaa tatctttctc tatagcttcg ttcactacat cttcctcaat ctcttttttt
    18061 gcaaaagatc ccgctgaatc gaccgcttgt tgtgcctctt ctaccacctt ttcagctgaa
    18121 tgctctaaat gttcagttac ttttttagat cttgacatac tcgccacctc tagttagatt
    18181 tgcccacttt aaataataat gtattcatca aagttacatt atcggcttta tccgataccc
    18241 taatcttatc ttcttgccag cccatttgtt tagctatctt tgcaatccgc cggctcacta
    18301 caaccagatc acattcaaat aaccatgctc tacaatctgc tttcgcttgt tcataaagtg
    18361 atcttaaaat ttcactactg gtgatcacaa tagtatctac tcccaagcgt ttacataagc
    18421 tgattttttc gggaatatca tcggtaaccg gctctctacg ataacactcc aaatattgaa
    18481 tagttgcccc acgcaagact gcagtttcag caagtagctc acgcccagaa tcggctctta
    18541 gaattaaaat agttttatca gttagattct gcatttcagg taatgccaaa accccctcgc
    18601 tattttcaaa ttctatcgga taaatgaccg cttgttcagc tttttctgtt aaatatttcg
    18661 cagtccgttg ccctaccgca aaatatttca aatctgaacg aaaatggaac ccggtatcta
    18721 ctaatgtttt tgcagcatag tccactgcat tcggcgaaac aacaaataca taatcgtctg
    18781 attttagccg agaaatagcc gaaggaagca aaggtaattc tttaccggct tcaatcgtaa
    18841 atagcggttg atgaatagca aaaatttgct gttcattcaa catatctacc aattcttgcc
    18901 cccgactatc caggcgtgtg accaacacat tcattattgt acgttttcgt tataaaccgc
    18961 agctaaaatt ttatctgcac cttgagcaag caactgttcc gccaccaaaa tgcctaattg
    19021 ctccgcctct tgcttatgtc cttttgccga agcccgaata atttgtgagc catctaacga
    19081 tccaactaac gcattaagcg ttaattcatc gccctctaat gtagcataac caccaatcgg
    19141 cacttggcaa ccgccttgca aacgggtatt cattgcacgt tctgccatca cgcaacaagc
    19201 ggtcgaacta tggtttaatt ttgcaatgta gttcaaaatc cgttcatcat tggctcgagt
    19261 ctcaatccct actgctcctt gaccagctgc gggtaatgat tgttccacag aaatatagct
    19321 acggattcgc tcttgcaagc ctaaacgaat taagccggca gaggctaaaa taatcgcatc
    19381 atactcgcca ttatctaatt tgcttaagcg agtgccgaca ttgcctcgca atgatttaac
    19441 ctctaaatgc ggatatttcg ccattaattg gcactgacgg cgtaagctcg atgtaccgac
    19501 cacagcacct ttcggcaaat cttctaacga atggtagttg ttcgacacaa acgcatcacg
    19561 gggatcttca cgttcacaaa tcaccgcaag ccccaagcct tcgggaaagc tcatcggcac
    19621 atctttcatt gaatgcaccg caatatcagc tcgattttct aaaagggcta attctaactc
    19681 tttcacaaac aagccttttc cgccaatttt ggctaatggg gtgtctaaaa taatatcgcc
    19741 tttcgttacc atcgtaacca gttcgacaga taattgcgga aaatgttttt ctaattcgct
    19801 ttttacaaaa tttgcctgcc ataaggctaa cgggctttga cgggttgcaa tgcgtaaaat
    19861 atctttcata aattctaaaa ttaaaacatt gagttaatga attatcctac cactttttag
    19921 ctgaactgcc aaaaataatc gtggatttcg ctttgcattt aatcaaaaat ccgact
//
LOCUS       DANLZD010000032        19910 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.032, whole genome shotgun sequence.
ACCESSION   DANLZD010000032 DANLZD010000000
VERSION     DANLZD010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19910)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19910)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19910
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.032"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            234..530
                     /locus_tag="PXE26_000866"
     CDS             234..530
                     /locus_tag="PXE26_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HDL5593470.1"
                     /translation="MTAITIPQFEEVTSKQFQSEFGRIVDIVKGKTPVAITQYGRPTM
                     VLFPYDQAVEARRLLAKQRLLEMLAERDKNPPAALAEITLEELDKMIDEERNAL"
     gene            520..936
                     /locus_tag="PXE26_000867"
     CDS             520..936
                     /locus_tag="PXE26_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative toxin-antitoxin system toxin component,
                     PIN family"
                     /protein_id="HDL5593471.1"
                     /translation="MHSDYLVIDTNILISGLLFPKSNPNLAVKKALLGYTICVSQATF
                     DEFLEVSARPKFAKYFSIQEREEFIANLLDAVKFVEIKETITDCQDPKDNKFLEVAIS
                     AKAKYLVTGDKKDLLSMNPYRNVEIISVSEFLAETR"
     gene            936..2594
                     /locus_tag="PXE26_000868"
     CDS             936..2594
                     /locus_tag="PXE26_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnD/SsuA/transferrin family substrate-binding
                     protein"
                     /protein_id="HDL5593472.1"
                     /translation="MKRFLTLFLLLFSSFSLAETHQIGILAQRGEAYTRTHWQPWVDW
                     LNSQFPNERFELVPLGINEASRRAELDFLLTNQAQFFYLSNQNVRWLATLNSPFSANG
                     EQGAVGSSIWVRADSHYQQLSDLKNQTISAVDNDAFGGFLLGLYQFHQAGMRQNRDFS
                     VQFSGFPVENALALLAEKQVEAAIVPVCLLEELEKEGKFKRSDFRLILQNPQAQGCLA
                     STPLLPNWSLAAMENVPNELAVQLATRLLNSHNPDLPRWTLPFSSAQADHILRELYRH
                     PQQKSLWATVLDWVRLNKFGLLAVVLFILLNLVALRYQVYRKSKALQQAHCKMQQYQQ
                     ELTRADRLALLGEMTTGFAHELKQPLSAVRMYAEGLKSQNSDPYQQRILDKLIAQVDR
                     AVKTMQSIRDWAQNRPSGEPQAVILNQLITNVIEFVAVENRQNAQISLIADRTFRLNL
                     HATVLEQVLTNCLLNALQAGASEISVRLQAVENGLEIAIEDNGGGFSPAQLEFPFVPF
                     RTDKPHGLGLGLVLCQRLMQSLNGRIVLANGENGAKVVLLLPQI"
     gene            2680..3327
                     /locus_tag="PXE26_000869"
     CDS             2680..3327
                     /locus_tag="PXE26_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDL5593473.1"
                     /translation="MIIHILDDEESILDAMSFLLAPLGVEIQTWQSSLDFLAQADLHR
                     QGVLLLDIRMPLPDGQQVHQQLREAQSTLAVVIMTAHGDVPMAVAELKKGAVDFLQKP
                     ASFEQLKQAIAQAEKVSEKAVKIREISQNYAKLTEKERNLVPLIMQGFTNKQIADKLA
                     ISVRTVEVHRANVMEKMQAESLAGLVQMIGELQYKGSGNCSATFSFDFCRINLLL"
     gene            complement(3311..4249)
                     /gene="ttcA"
                     /locus_tag="PXE26_000870"
     CDS             complement(3311..4249)
                     /gene="ttcA"
                     /locus_tag="PXE26_000870"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005634611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HDL5593474.1"
                     /translation="MTDDIQKSDKKITYNFNKLQKRLRRNVGNAIADFGMIEEGDRVM
                     VCLSGGKDSYTLLDILLNLQQSAPVNFSVVAVNLDQKQPGFPEEVLPRYLESIGVEYK
                     IVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDMLATLF
                     LNMFYGGKMKSMPPKLISDDGKQIVIRPLAYCKEKDIIKYAEAKQFPIIPCNLCGSQP
                     NLQRQVVKEMLNTWDRQYPGRLETMFSALQDIVPSHLCDPKLFDFKGIKHGQTIEGIE
                     GDTAFDDVKIEAKTFLYEDDDNNFAEAGMIQFKEVN"
     gene            complement(4312..5025)
                     /gene="ubiG"
                     /locus_tag="PXE26_000871"
     CDS             complement(4312..5025)
                     /gene="ubiG"
                     /locus_tag="PXE26_000871"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HDL5593475.1"
                     /translation="MQNVDQQEITKFENMAKTWWDPNGSFKPIHLLNPLRLAYILEKS
                     NGLFGKKVLDVGCGGGILSEAMAKQGAIVTGIDMTSQPLEVAKQHAKESGLEIDYQQT
                     TIENFLAKMTACNQEKFDVITCMEMLEHVPDPLSIIQSCKALLKPDGVLFFSTINRTF
                     KAYMLVIIGAEYVLKMLPKGTHEFEKFIKPAELLAWCDQADLRCQEMRGYHFNPLTEK
                     FWLNNDVSCNYIATLKPNN"
     gene            5090..5470
                     /locus_tag="PXE26_000872"
     CDS             5090..5470
                     /locus_tag="PXE26_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine dimer DNA glycosylase/endonuclease V"
                     /protein_id="HDL5593476.1"
                     /translation="MTRINLVPPTELCDQHLLAEHRELTRIPNAVAKGKFSLKGQPED
                     YKLGEGHVRFFFNKLTFLKKRYDALHEECLARGFKVQYFWAEHLPQDPSLWLDYQPTE
                     TALTVNRERIALRMPANPRFSERK"
     gene            5567..8263
                     /gene="gyrA"
                     /locus_tag="PXE26_000873"
     CDS             5567..8263
                     /gene="gyrA"
                     /locus_tag="PXE26_000873"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HDL5593477.1"
                     /translation="MSELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPV
                     HRRVLFSMDQNSNTYNKPHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYML
                     VDGQGNFGSIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLP
                     TKIPALLVNGSSGIAVGMATNIPPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFP
                     TGAIINGRKGIEEAYRTGRGKVYVRAKASVETTDKGREQIVVTELPYQVNKAKLIEKI
                     AELVKEKKIEGISKIDDYSDKKGISIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMV
                     ALDNGQPKVLNLRQIIEAFVKHRREVVTRRTIFELRKARERAHILEGLAIALANIDPV
                     IELIRASKTAEEAREGLLARPWALGNVAPMLEAAGVGASRPEDLPEHLGVRDGEYYLS
                     EAQARAILELRLHRLTGLEHEKIVEEYKELLTEIGELIHILTSPERLMEVIREELERV
                     KTDFNDERRTEITAASGDINIEDLIAQEDVVVTLSHAGYVKYQPLSDYEAQRRGGKGK
                     SATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQLPQASRGARGTPIVNILPL
                     VKEENERITAILPIPNGEFSADKFIFMATASGVVKKVSLDAFSNVRASGLIALKLREG
                     DELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAMGRTATGVRGIKLSTTEISSEEIE
                     EAEIIETDNEEAEDSSSVSLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKS
                     RATKGVVSIKVNERNGKVVAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVR
                     IIRTAEDEQVVSLERVCEPEDDENESLDALENAETAETSTEE"
     gene            8358..10322
                     /locus_tag="PXE26_000874"
     CDS             8358..10322
                     /locus_tag="PXE26_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5593478.1"
                     /translation="MALINLSNAYLGFGDHPLLDHTELHIEPGERVCLVGRNGAGKST
                     LMKILAGEVQLDDGKLVFEKDIVVTRLEQDPPRHIEETVFDYVAEGIAHLADLLKQYH
                     HISLQMQTDYSDELLAKLSAVQSQLEHANGWQFENRIQDTLKLLELAPDKRLCELSGG
                     WVRRAALARALVADPDVLLLDEPTNHLDIEAIAWLENLLLDFKGSIIFISHDRAFIRK
                     MATRIVDLDRGKLVSYPSNYDKYLEEKAEDLRVEALQNELFDKKLAQEEVWIRQGIKA
                     RRTRNEGRVRALKALREERRNRREVQGTAKIQIDNTARSGKIVFEVENAGYEIGGRTL
                     LKNFSTTILRGDKIALIGANGIGKTTLIKLLLGEIQPTSGSVRCGTKLEVAYFDQYRV
                     DLDPEKTVMDNVADGKQDVEVNGVKRHVLGYLQDFLFPPKRAMTPVKALSGGERNCLL
                     LAKLLLKPNNLLILDEPTNDLDVETLELLEEMLTDYQGTLIIVSHDRQFVDNTVTECY
                     FFEGEGVVNKYVGGYFDAKQQQENYFAATADKRLNSSKNLQKIEEKAPLAEQEKQKAD
                     QEKTKAEPTKKTKLSYKEQRELDELPAKMEQLEADIEALQAEVNSAEFFAKDPSYTNA
                     QLQKLADTEAALEQAFERWEALENIKNGNI"
     gene            10404..11162
                     /gene="tcdA"
                     /locus_tag="PXE26_000875"
     CDS             10404..11162
                     /gene="tcdA"
                     /locus_tag="PXE26_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HDL5593479.1"
                     /translation="MTERLDNYEQRFGGIGRLYTPEGLEKLRRSHICVIGIGGVGSWA
                     VEALARSGIGKITMIDMDDICVTNINRQIHAMSGTVAQLKTEAMKERIERINPECVVE
                     IIDDFLTQDNLADYLNRGYDYVIDAIDSLRVKAAMIAFCKRNKIKIITTGGAGGQTDP
                     TKIQITDLSKTVQDPLAARVRSLLRKEYGFSNKNKFGVECVSSTQQLIFPQMGEACEV
                     SATMNCANGFGAVTMVTATFGFFAVSRVIDKLLK"
     gene            11209..12576
                     /locus_tag="PXE26_000876"
     CDS             11209..12576
                     /locus_tag="PXE26_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LOG family protein"
                     /protein_id="HDL5593480.1"
                     /translation="MAIHRVNPKGSMEQLSHLEMELLAKNTQGNLHQLYRNCSLAVLN
                     SGVHTDDSRALLSQYPDFEIRLLTREKGVSLELHNPPETAFVDGKMILNIQYHLFAVL
                     RDIVFVNALKNAIRPLEETSLEALTTNTVFSILRNAKAIEMNTDPNLVVCWGGHSINE
                     TEYQYCRAVGQEFGLRELNIVTGCGAGVMEAPMKGAAIGHANQRYKNGRFIGITEPSI
                     IASEPPNPIVNELVIMPDIEKRLEAFVRLGHAIVVFPGGPGTLEELLYIIGIKLNPAN
                     HAQQLPLILTAPKESADYFYAIDQFIGETLGEEARSLYEIIIDDSVLVARKVKQAMIE
                     VKSSRYESGDAYNFNWSLKIEEDFITPFIPTHENMANLNLSLAQPKEQLAANLRRAFS
                     GIVAGNIKPETSDLIEKYGVFKLHGDRKLMEHIDKLLERFVVQHRMKIPTGEAYQPCY
                     EIVKG"
     gene            12596..14143
                     /locus_tag="PXE26_000877"
     CDS             12596..14143
                     /locus_tag="PXE26_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HDL5593481.1"
                     /translation="MYLKHIEISGFRGINHLSLQLRPNMVLIGENAWGKSSLIDALSL
                     IFNLEQALYQFQFKDFHIQYTDTPNQVRDIQLVFTFCEEHQHDLAVQFPAYLAQAAFY
                     IDNHRCVSLAVTGKLHGEQISTDYQFVDQSLKPIQIEQAENAIRQFIYHHPVYRLRDA
                     RLNNRVHNELLLKGSSQLEDDFQRELNALSSLLKYYFLTSQSRYLIKTSMQDTALWWE
                     KVKSLCLRLKQQPELVESAQQHISTLFLFNPRSTVIEKPIILFEDLNAQLHPRMIAIF
                     WELLGFLPSQRITTTNSIELLSQVPLREICRLVRHHDHTQAYWLERHSLGKEDLRKLT
                     FHIHHNRGLALFAKAWILVEGETEVWILQELARLLDIHLEMEGIKIVEFAQCGLRPLI
                     KYARAMGIEWYVLTDGDDSGKRYADTVKSMEEDFAHRLTMLPQKDIEHFFYKAGLRNV
                     FIQLANWRSQEKYPVSYIIKRAIQRSSKPDLAIALANEMGQRGEHSIPTLFKQLFADV
                     LALINKV"
     gene            14366..15400
                     /gene="metN"
                     /locus_tag="PXE26_000878"
     CDS             14366..15400
                     /gene="metN"
                     /locus_tag="PXE26_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein
                     MetN"
                     /protein_id="HDL5593482.1"
                     /translation="MIQLKNISKQFEVKGKKITALDNVNLEVPRGTIYGVIGASGAGK
                     STLIRCVNLLERPTIGQVIVDGQDLTAMSDKELIHARRNIAMIFQHFNLLSSQTVFEN
                     VALSLRLSNTPKEQVEKKVNELLDLVGLTDRKDVYPANLSGGQKQRVAIARALASDPH
                     VLLCDEATSALDPATTQSILQLLKDINKRLGLTILLITHEMEVVKRICDRVAVIDKGQ
                     LIESGSVSEIFSNPKTELAQKFIQSTFHFELPQEYTEQLSSSPTEHSKPIIKFEFTGR
                     SVDAPLLSMASKKFGIDFSILMSQIDYAGGVKFGFVIAEVSGNPDSIAEAKFYLIDNN
                     VKVEVLGYVG"
     gene            15390..16067
                     /locus_tag="PXE26_000879"
     CDS             15390..16067
                     /locus_tag="PXE26_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5593483.1"
                     /translation="MWADFMQEMTPQMWSLVWESTFETVYMGFVATALAVVIGLPIGF
                     LAFLTGKGEILENPRLHQVLDVVINIGRSIPFIILLIILLPFTRLVVGTTLGTTAAIV
                     PLSVSAIPFFARLTSNALLEIPSGLTEAAKSMGATNWQVVTKFYLPESLPILINGITL
                     TLVALIGYSAMAGAVGGGGLGNLAISYGEHRNMVYVKWIATIIIVAIVMISQKLGDHL
                     AKRYDHR"
     gene            16090..16923
                     /locus_tag="PXE26_000880"
     CDS             16090..16923
                     /locus_tag="PXE26_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family lipoprotein"
                     /protein_id="HDL5593484.1"
                     /translation="MSFKKILGVALVSALALTACKEEKKAESTAAPAAQAPAKIKVGV
                     MSGPEHTVAERAAQIAKEKYGLEVEFVLFNDYALPNTAVSKGDLDANAFQHKPYLDKD
                     SQSKGLNNLVIVGNTFVYPLAGYSKKVKNVSELAEGAVIAVPNDPSNLARALILLEKQ
                     GLIKLKDNTNLFSTSVDIIENPKNLKIKEVDTSIAAKALDDVDLAVVNNTYAGQVGLN
                     TQDHGVFVESKDSPYVNIIVARQDNKDAANVQNFIKSYQTEEVYQEAQKHFKDGVVKG
                     W"
     gene            17006..17836
                     /locus_tag="PXE26_000881"
     CDS             17006..17836
                     /locus_tag="PXE26_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family lipoprotein"
                     /protein_id="HDL5593485.1"
                     /translation="MNFKKLLGVALVSALALTACKDEKAQAPATTAKTENKAPLKVGV
                     MTGPEAQMTEVAVKIAKEKYGLDVELVQFTEYTQPNAALHSKDLDANAFQTVPYLEQE
                     VKDRGYKLAIIGNTLVWPIAAYSKKIKNISELKDGATVAIPNNASNTARALLLLQAHG
                     LLKLKDPKNVFATENDIIENPKNIKIVQADTSLLTRMLDDVELAVINNTYAGQAGLSP
                     DKDGIIVESKDSPYVNLVVSREDNKDDPRLQTFVKSFQTEEVFQEALKLFNGGVVKGW
                     "
     gene            17888..18679
                     /gene="metQ"
                     /locus_tag="PXE26_000882"
     CDS             17888..18679
                     /gene="metQ"
                     /locus_tag="PXE26_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     lipoprotein MetQ"
                     /protein_id="HDL5593486.1"
                     /translation="MKIMKLAGAVAIFSLFLTACNDKAEKLKVGVISGPEHKVMEVAA
                     KIAKEKYNRDVELVVFTDYATPNAALDKGDLDLNAFQHKPYLDNQIQEKGYKLVPVGN
                     TFVYPIAAYSKKIKSLAELKDGDTIAVPNDPTNLARALILLEKQDLIKLRADAGLKAT
                     SVDIIENPRKLVIQEIEAPLLPRTLDDVAFSIINTTYAGQNGLTPTKDGIFVEDKDSP
                     YVNLIVARENNQHSEAVKDLVKAYQTEEVYNKANEEFKGAMIKGW"
     gene            complement(18724..19875)
                     /gene="metK"
                     /locus_tag="PXE26_000883"
     CDS             complement(18724..19875)
                     /gene="metK"
                     /locus_tag="PXE26_000883"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HDL5593487.1"
                     /translation="MAINLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACET
                     YVKTGMALVGGEITTSAWVDIENLTRQVICDIGYTHSDMGFDAHSCAVLNAIGKQSPD
                     INQGVDRADPLEQGAGDQGIMFGYATNETEVLMPAPITYAHRLMEQQSKVRKSGKLDW
                     LRPDAKSQLTFAYENNKIIGIDAVVLSTQHAEHISQKELIEGVMEEIIKPVLPSEWLS
                     QNTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAA
                     YAARYVAKNIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVSNEILVKLIYQNF
                     DLRPYGLIKMLDLIKPIYRETAAYGHFGRKHFPWEKTDKAEALRAGAGL"
BASE COUNT         5847 a         3986 c         4681 g         5396 t
ORIGIN      
        1 tatctctttt gttcaaggca agtatggata cctgaccgca ggcctggaga tagaacctac
       61 atataatatg ctctactaca ttaagccata aaaaatagaa aatcaagtgt ttgttcaagt
      121 ttttatgtta ttgaatttac aataactaca aaaatttatc ttaattggct cgattgattt
      181 ttacacaaaa catagctaac atatccaaaa tcactcacat taggagctta aaaatgacag
      241 cgattactat ccctcaattt gaagaggtga cttctaagca atttcaatct gagttcggca
      301 gaattgttga tatcgtaaaa ggcaaaaccc ctgtggcgat tacccaatat ggcagaccga
      361 caatggtgct ttttccttac gatcaagcgg ttgaagctcg gcgattatta gcaaaacagc
      421 gtttgcttga aatgcttgca gagcgagata agaatccgcc ggcagctctt gcagaaatca
      481 cgcttgaaga gttggataaa atgattgatg aggaacgtaa tgcactctga ttatttagtg
      541 attgatacga atattttgat tagtggttta ttgttcccaa aatcaaatcc caatttagca
      601 gtgaaaaaag ccttattagg ctataccatt tgtgtctcgc aagcgacttt tgacgaattt
      661 ttagaagtct ccgctagacc gaaatttgct aaatatttca gtattcagga aagggaagaa
      721 tttattgcca atttgttgga tgcagtaaag tttgtggaaa ttaaagaaac gattacagat
      781 tgccaagatc ccaaagataa taaattttta gaagtggcga tcagtgcaaa agcgaagtat
      841 ttagtgacgg gcgataaaaa agatctcctc agtatgaacc cttatcggaa tgttgaaatt
      901 atttccgtca gcgaattttt agcggaaact cgctaatgaa acggtttctc actctttttc
      961 ttctcctttt ttcatctttt tcattagccg aaacccacca aatcggcatt ctcgctcagc
     1021 gtggggaagc ctacacccgc acccattggc agccttgggt ggattggtta aattcgcagt
     1081 ttcccaacga gcggtttgag ctggttccat tggggattaa cgaggcgagc cgccgggcgg
     1141 agttggattt tctgctgacc aatcaagctc agtttttcta tttgagtaac caaaatgtgc
     1201 gatggcttgc cacgctcaac agtccgtttt cggcaaatgg tgagcaaggg gcggtgggca
     1261 gtagcatttg ggtgcgtgcc gacagccatt atcagcagtt aagcgatctg aaaaatcaga
     1321 ctatcagtgc ggtggataac gatgctttcg gcggtttttt gcttgggttg tatcagtttc
     1381 atcaagcagg aatgcggcaa aatcgggatt tttcggtgca gtttagcggt tttccggtgg
     1441 aaaatgcgtt ggctttgctg gcggaaaaac aggtggaagc ggcgattgta ccggtctgtt
     1501 tgctggaaga gttggagaaa gagggcaagt tcaagcggtc ggattttcgc ttaattttgc
     1561 aaaacccaca ggcgcagggt tgccttgcca gcacgccgtt gttgccgaac tggtcgctgg
     1621 cggcaatgga aaatgtgcca aacgagctgg cggtacagct tgccacacgc ttgctaaaca
     1681 gccacaatcc cgacctaccc cgctggacgt tgccgttttc ttccgcccaa gccgatcaca
     1741 ttctgcgtga actgtatcgc cacccgcaac aaaaaagcct gtgggcaacg gtgctggatt
     1801 gggttcgtct caataaattc ggcttgttgg cggtggtgtt gttcattttg ctcaaccttg
     1861 tcgccctgcg ttatcaggtc tatcgcaaaa gcaaggcgtt acagcaggca cactgcaaaa
     1921 tgcagcagta tcagcaggaa ctgacccgag ccgaccgcct tgctttgttg ggcgagatga
     1981 caaccggttt tgctcacgaa ctgaaacagc cgttgtcggc ggtgcgaatg tacgccgagg
     2041 ggctgaaaag ccaaaacagc gatccttatc aacagcggat tttggataag ctgattgcgc
     2101 aggtagatcg ggcagtgaaa acgatgcaga gcattcggga ctgggcgcaa aaccgcccga
     2161 gtggtgaacc gcaagcggtc attttgaacc aattgattac taatgtgatc gagtttgtgg
     2221 cggtggaaaa tcgccagaat gcacaaatct cgctgattgc cgaccgcact tttcggctta
     2281 atttacacgc cacggtactg gaacaagtac tgacgaactg cctgctcaac gccctgcaag
     2341 ccggtgcaag cgagatatcg gtgcggttac aagcggtcga aaacgggctg gaaattgcaa
     2401 tcgaagacaa cggcggcggt ttttcccctg cccagcttga atttccgttt gtgccatttc
     2461 gcaccgacaa accacacggc ttagggctag gcttggtgct atgccaacgg ctgatgcaat
     2521 cgctcaacgg acggattgta ttggcgaacg gggagaacgg ggcgaaggta gtgcttttac
     2581 tccctcaaat ataaatgtag gggcaggtcc tgtgcctgcc cgtaaatcct atcaaattca
     2641 gggcgggcac aggacccgcc cctacggaaa aaagaaaaaa tgattattca cattcttgat
     2701 gacgaagaaa gcattttaga cgctatgtcg ttcctgcttg ccccgcttgg ggtggaaatc
     2761 caaacgtggc aatccagcct agattttttg gcacaggcgg atttacaccg gcaaggcgtg
     2821 ctgttactag atattcgaat gccgctgcca gacgggcaac aggttcatca acaactgcga
     2881 gaggcacaat cgaccctggc ggtggtgatt atgaccgccc acggtgatgt gccgatggca
     2941 gtcgctgaat tgaaaaaagg cgcagtggat tttctgcaaa agccggcaag ttttgaacag
     3001 ctaaaacagg cgattgcaca ggcggaaaaa gtaagtgaaa aagcggtgaa aattcgtgaa
     3061 atttcgcaaa attacgccaa attgacggaa aaagagcgta accttgtgcc actgattatg
     3121 caaggtttca ccaataaaca gatcgcagat aaattagcga tttcagtgcg tacggtggaa
     3181 gtacatcgag ccaatgtgat ggaaaaaatg caggcggaga gtttggcggg gctggtgcag
     3241 atgatcgggg agttacaata taaaggtagc ggaaattgct ctgctacctt tagtttcgac
     3301 ttttgccgta ttaatttact tctttaaact gaatcattcc cgcttcggca aaattgttat
     3361 cgtcatcttc gtataagaag gttttggctt caattttgac atcatcaaaa gcggtgtcgc
     3421 cttctatgcc ttcaatggtt tgaccgtgtt taatcccttt aaaatcaaac aatttcggat
     3481 cgcataagtg ggatggcacg atatcttgca aagcactgaa cattgtttct aaacgccccg
     3541 ggtattggcg atcccaagta ttcagcattt ctttcaccac ttggcgttgt aaattaggct
     3601 gagaaccaca cagattacac ggaataatcg ggaactgctt ggcttcggca tatttgataa
     3661 tgtctttttc tttacaatag gcgagtgggc ggatcacaat ttgcttgccg tcatcagaga
     3721 tcagtttagg tggcatactt ttcattttgc cgccgtagaa catatttaag aataaagtcg
     3781 ccagcatatc gtcacggtga tgccctaatg caattttggt tgcacccaat tcggtggcgg
     3841 tgcggtataa aatcccacgg cgaagtcgtg agcaaagtga acaggtggtt ttgccctccg
     3901 gaattttctc ttttacgatg ccgtaggtgt tttcttccac aattttgtat tccacgccaa
     3961 tgctttctaa atagcgaggc aatacctctt ccggaaatcc cggttgcttt tggtctaaat
     4021 tgaccgctac cacactaaaa ttcaccggtg cactttgctg taaattgagc aaaatatcta
     4081 acagcgtata gctgtcttta ccgccggaaa ggcagaccat tacacggtcg ccctcttcaa
     4141 tcataccaaa atcggcaatg gcattaccga cattacggcg taaacgtttt tgtaacttgt
     4201 tgaaattata agtaattttt ttatcagatt tttgaatatc gtctgtcata atagttgtac
     4261 taggcttaga aattagcggt gtatagtaaa gatttcgcac tattttgcaa gttaattatt
     4321 cggcttcagc gtagcgatat agttacaact cacatcatta ttgagccaaa atttttcggt
     4381 taatgggttg aaatggtagc ctctcatctc ttggcaacgt aaatcagcct gatcgcacca
     4441 agctaacaat tcggcaggct tgatgaattt ttcaaattcg tgcgtgcctt ttggcaacat
     4501 tttcagcaca tattccgccc cgataattac caacatatag gctttaaaag tacggttgat
     4561 ggtagagaaa aacagcacgc cgtcaggttt gagcagggct ttacagcttt gaatgataga
     4621 aagcggatcg ggaacgtgtt ccagcatttc catacaagta atcacatcga atttttcttg
     4681 attacaagcg gtcatttttg ctaaaaaatt ttcaatcgtg gtttgttggt aatcaatctc
     4741 taacccactt tctttggcgt gctgctttgc cacttcaagc ggttgagagg tcatatcgat
     4801 gccggtaaca atcgctccct gttttgccat tgcctcactt aaaataccgc caccacagcc
     4861 gacatctaac acctttttgc caaataaacc gttcgatttt tctaaaatat aggctaaacg
     4921 cagtggatta agcagatgaa tcggcttgaa actgccgttt ggatcccacc aggttttagc
     4981 catattttca aattttgtga tttcttgctg atcgacgttt tgcataaact gttcctatgg
     5041 taaatttagg gcattactat aacgcattta gcctaaaagg aaaatcagaa tgacccgaat
     5101 taaccttgtt ccgccaacgg aattatgcga tcaacatctg cttgccgaac atcgtgaact
     5161 tactcggatt ccgaatgcgg tagcgaaagg caaatttagc ctaaaaggac agccagaaga
     5221 ttacaaactg ggcgagggac acgttcggtt tttcttcaat aaactcacgt ttttgaaaaa
     5281 gcgttacgat gcgttacacg aggaatgttt agcaagaggt tttaaggtgc aatatttctg
     5341 ggcggaacat ttaccacaag atccctctct ctggctagat tatcagccga ctgaaaccgc
     5401 tctgactgta aatcgggagc gaattgcatt aagaatgccg gcaaatccac gttttagcga
     5461 aagaaaatga ccgcttgtac gcctttttgt tgctttttat gctataatct cgccaatttt
     5521 ttcgccttat ttaaggctct tttactaata aaattaggaa atttcaatga gcgaattagc
     5581 caaagatatt attcccgtaa gtattgagga cgaattaaaa acctcttacc ttgactatgc
     5641 gatgtcggtg attgttgggc gtgccttgcc tgatgtacga gacggtttaa agccggtaca
     5701 ccgccgagtg cttttttcaa tggatcaaaa cagcaacacc tataataagc cgcacgttaa
     5761 atctgcccgt gtggtcggtg atgtgatcgg taaatatcac ccacacggtg actctgcggt
     5821 gtatgacact attgtgcgta tggctcaacc gttctcacta cgttatatgt tggtggacgg
     5881 gcaaggtaac tttggttcta ttgatggcga tgcaccggca gcaatgcgtt ataccgaagt
     5941 gcgtatgcag aaaattacgc aggaattatt aaccgatctc gataaagaaa cggtggattt
     6001 ctcaccgaac tatgacggca aagagatgat tcctgatgta ttgccaacca aaattccggc
     6061 tctgttagtc aatggttctt cagggattgc ggtcggtatg gcaaccaata ttccacctca
     6121 taatttaggc gaagtattag atggttgctt ggcgtatatt gaaaatgaac agattagtgt
     6181 tgaagagcta atgcgttata tcccggggcc ggatttcccg accggggcga ttatcaacgg
     6241 tcgtaaaggg attgaagagg cttaccgcac cggtcgtggc aaggtgtatg tgcgcgcgaa
     6301 agccagcgtg gaaacaactg ataaagggcg tgagcaaatt gttgtaaccg aactgccata
     6361 ccaagtgaat aaggcaaaat taattgaaaa aattgccgag ctggttaaag agaagaaaat
     6421 cgaaggcatc agcaaaattg atgactattc cgataaaaaa gggatttcga ttgttattga
     6481 agtcaagcgt gatgcagtgg gtgaagtggt gttaaaccac ctttattctt taacccaaat
     6541 gcaggtcacg tttggtatca atatggtggc gttagataat gggcagccaa aagtgctgaa
     6601 cttacgccag atcatcgaag cctttgttaa acaccgtcgt gaagtggtca cacgccgtac
     6661 gatttttgaa ttgcgtaaag cccgtgaacg tgcccatatt ttagaaggtt tggcgattgc
     6721 gttagcgaat atcgacccgg taattgaatt aattcgagcc tcaaaaaccg cagaagaagc
     6781 ccgtgaaggc ttattggctc gcccttgggc attaggcaat gttgcaccaa tgttagaggc
     6841 tgctggtgtt ggtgcttccc gaccggaaga tttacctgaa cacttaggag tgcgtgatgg
     6901 cgaatactat ttatctgaag ctcaagccag agcgatttta gagctacgct tacaccgctt
     6961 aaccggttta gaacacgaga aaatcgttga agaatacaaa gaactcttaa ctgaaattgg
     7021 cgaattaatc cacattttaa ccagcccaga acgcttaatg gaagtgatcc gtgaagagtt
     7081 agaacgtgta aaaaccgatt ttaatgatga acgccgtact gaaattaccg cagcctctgg
     7141 cgacatcaac attgaagact taatcgcaca agaagatgtg gtggttacgc tttctcacgc
     7201 cggctatgtg aaatatcagc cgttatccga ctacgaagca caacgccgtg gcggtaaagg
     7261 taagtcggca accaagatga aagaagatga tttcatcgaa aaactcttgg tggcaaacac
     7321 ccacgacacc attctttgct tctcaagccg tgggcgttta tatcaattaa aagtgtatca
     7381 attaccgcaa gcaagccgtg gggcaagagg cacgccgatt gtgaatattc tgccgttagt
     7441 gaaagaagaa aacgaacgta ttaccgcgat tctaccgatt ccaaacggtg aatttagtgc
     7501 cgataagttt atctttatgg caacagctag cggtgtagtg aaaaaagttt cccttgatgc
     7561 ctttagcaac gtgcgtgcaa gcggtctgat tgcgttaaaa cttcgtgaag gcgatgagct
     7621 gatcggggta gatattactg atggtaacag cgaaattatg ttgttctcgg cacaagggcg
     7681 agtagttcgc tttgccgaaa cagcagttcg tgcgatggga cgtaccgcca ccggcgtacg
     7741 aggtattaaa ctttctacca ccgaaatttc aagcgaagaa attgaagaag ctgaaattat
     7801 tgaaactgac aatgaagagg cagaagattc ctccagcgtc agccttgata aagaccgtgt
     7861 ggtttcttta gtgattcctc gcaccgaagg cgatatttta accgtcaccc aaaacggcta
     7921 cggtaaacgt acggtgatta gcgaatatcc ggtgaaatcc cgagcaacca aaggggtcgt
     7981 ttcgattaaa gtgaatgaac gaaacggcaa agtggttgcg gcagttcaag tagaggaaac
     8041 cgaccaaatt atgttgatta ccgatgccgg cacgctggtt cgcacccgag tggcagaagt
     8101 cagcctcgtt ggacgaaaca cccaaggcgt acgtattatt cgcaccgcag aagacgaaca
     8161 agttgttagc cttgaacgag tctgcgagcc tgaagacgat gaaaatgaaa gcctagacgc
     8221 attagaaaat gccgaaacag cagaaacatc aactgaagaa taatcttaac taaacaagcg
     8281 gtcgaatttt cacaattttt tgcaaaaata gaaggaaatt cgaccgtttt tggatcatac
     8341 agtagataat aaaaactatg gcacttatca atctttccaa cgcctattta ggctttggcg
     8401 atcatccttt attggatcat actgaattac atatcgaacc cggcgagcgg gtttgtttgg
     8461 tggggcgtaa cggggcgggt aaatcgaccc tgatgaaaat tctggcgggc gaagttcagc
     8521 ttgatgacgg caagttggta tttgaaaaag acattgtcgt tacacgtctt gaacaagatc
     8581 cgccccgcca tattgaagaa acggtgttcg attatgtggc ggaggggatt gcccatcttg
     8641 ccgacttatt gaagcaatat caccacattt ccctgcaaat gcagaccgat tacagcgatg
     8701 aactgctcgc caaactttca gcggtgcaat cgcaattaga acacgctaac ggttggcagt
     8761 ttgaaaaccg cattcaagac accttgaaac tgctggaact cgcccccgac aaacgcctgt
     8821 gcgaactctc aggcggttgg gtacgccgtg cggcattggc tcgggcgttg gttgccgatc
     8881 ctgatgtatt gctgttggac gaaccgacca accacctcga cattgaggcg attgcgtggc
     8941 tggaaaatct gttattggat ttcaaaggca gtattatttt tatctcgcac gaccgtgcct
     9001 ttatccgcaa aatggcgact cggattgtgg atttagatcg aggcaaattg gtttcctacc
     9061 caagcaatta cgataaatac ttggaagaaa aagccgagga tctgcgagta gaagcgttgc
     9121 aaaatgagct gttcgacaaa aaactcgccc aagaagaagt ctggatccgt caagggatta
     9181 aggcaagacg cacccgaaac gaagggcgtg tgcgagcgtt gaaagcgttg cgtgaagagc
     9241 gtagaaaccg ccgagaggta caaggcacgg cgaaaattca gatcgacaac accgcacgca
     9301 gcggcaaaat tgtgtttgaa gtggaaaatg ccggctatga aatcggcggc agaaccctgc
     9361 tgaaaaattt cagcaccacc attttgcgtg gcgataaaat tgccctgatt ggagcgaacg
     9421 ggatcggcaa aaccacgctg atcaagctgt tacttggcga aattcagccg acatctggtt
     9481 cagtgcgttg tggcacaaaa ttggaagtgg cgtacttcga ccaataccga gtcgatcttg
     9541 accctgaaaa aaccgtgatg gacaacgtgg cagacggcaa gcaagatgta gaagtaaacg
     9601 gggtgaaacg ccacgttctt ggctatctgc aagacttcct gttcccgcca aaacgggcga
     9661 tgacaccggt gaaagccctc tcgggtggtg aacgcaactg cttgttgctg gcaaaactgt
     9721 tactcaaacc gaacaacttg ctgattttgg acgaaccgac caacgatttg gacgtggaaa
     9781 ccctcgaact gctggaagag atgctcaccg actatcaagg caccctgatt attgtgagcc
     9841 acgaccgtca atttgtggat aataccgtaa ccgaatgcta cttcttcgag ggcgaaggcg
     9901 tggtgaataa atatgtcggc ggctatttcg atgccaaaca acagcaggaa aattacttcg
     9961 ccgccactgc cgacaagcgg ttaaattcga gtaaaaattt gcaaaaaata gaggaaaaag
    10021 caccgcttgc ggagcaagag aaacagaaag ccgatcagga aaaaacgaaa gcagagccga
    10081 cgaagaaaac caaactttcc tacaaagaac agcgtgaact ggacgagtta ccggctaaaa
    10141 tggaacagct tgaagccgac attgaagccc tgcaagccga agtaaatagt gccgaattct
    10201 tcgccaaaga tccaagctac accaacgccc agctacaaaa acttgccgat accgaagccg
    10261 cgttagagca agcctttgag cggtgggaag cgttggaaaa tattaaaaac gggaatatct
    10321 aatgtagggg cgaatgatta ttcgcccttg atggataaaa tgattgggcg aaaaattttt
    10381 cgcccctaca aatgtgaagc aaaatgacag aaagattaga taactacgaa caacgttttg
    10441 gtggcattgg tcgcctttat acgccggaag gattggagaa actacgccgt tcgcatattt
    10501 gcgtgattgg gattggcggg gttggctcgt gggcagtgga ggcattggct cgctcaggta
    10561 tcggtaagat cacgatgatc gatatggacg atatttgcgt gaccaatatc aaccgccaaa
    10621 ttcacgcaat gagtggcacg gtggctcaac tgaaaaccga agcgatgaaa gagcggattg
    10681 agcggatcaa ccctgaatgt gtggtggaaa ttattgatga tttcttaacg caggataatc
    10741 tcgcagacta cctcaatcga ggatatgact atgtgatcga tgcgattgac agtttgcggg
    10801 taaaagcggc gatgattgcg ttttgtaaac gcaataagat caaaattatc accaccggcg
    10861 gggcgggcgg gcagaccgat ccgaccaaaa ttcaaattac cgatttaagc aaaacggtgc
    10921 aagatccgtt ggcggcaagg gttcgtagcc tgttgcgtaa agagtacggt ttcagcaata
    10981 aaaacaaatt cggcgtggag tgcgtttctt cgactcagca actgattttc ccacaaatgg
    11041 gtgaggcctg tgaggtgtcg gcaacaatga actgtgccaa cggctttgga gcggtgacaa
    11101 tggtgacggc aacgttcggc ttttttgcgg tgagtcgggt gattgataaa ctattaaaat
    11161 aacaagcggt catattaaat gaattttttg caaatcaagg agtaaataat ggcaatacat
    11221 cgagtcaacc cgaaagggag tatggaacag ctttcccatt tggaaatgga gttgttggca
    11281 aagaatacgc agggtaattt gcatcaactt tatcgtaatt gctctttggc ggtgctaaat
    11341 tccggtgtgc ataccgatga cagccgagcg ttgttaagcc aataccctga ttttgaaatc
    11401 cgcttattaa cccgtgaaaa aggcgtgtcg cttgaattgc ataatccacc cgaaactgcg
    11461 tttgttgacg gcaagatgat tttgaatatt caatatcacc tttttgcggt gctgcgggat
    11521 attgtgtttg tgaatgcgtt aaaaaatgcg attagaccgc ttgaagagac ttctttagaa
    11581 gccttaacca cgaataccgt attttcgatt ttgcggaatg cgaaagcgat tgaaatgaat
    11641 accgacccaa atttggtggt gtgctgggga gggcattcga ttaatgaaac cgaataccaa
    11701 tattgccgtg ccgtcgggca agagtttggc ttgcgtgagc tgaatattgt gaccggttgc
    11761 ggagccggtg tgatggaagc cccgatgaaa ggagcggcta tcggacacgc caatcaacgt
    11821 tataaaaacg ggcgttttat cggcattacc gagccgtcta ttattgcctc cgagccgcca
    11881 aacccgattg tgaatgaatt ggtaattatg ccggatattg aaaaacggtt ggaagccttt
    11941 gtgcgtttag ggcacgccat tgtggttttc ccgggcgggc cgggaacgct ggaagagttg
    12001 ctgtatatta tcggtattaa gttaaacccg gctaaccatg ctcagcaatt accactgatt
    12061 ttaaccgccc cgaaagaatc ggcagactat ttctatgcca tcgatcaatt tattggcgaa
    12121 actttaggcg aagaagctcg cagtttgtat gaaattatta ttgatgactc ggtgttggtg
    12181 gctcgtaaag tcaagcaagc gatgattgag gtaaaaagca gccgttatga aagtggcgat
    12241 gcttataatt tcaactggtc gttaaaaatt gaggaagatt ttattacgcc atttattcca
    12301 acccacgaaa atatggcaaa cctgaattta agtttagcac agccaaaaga gcagctggct
    12361 gcgaatttaa gacgggcatt ttcagggatt gttgcaggta atattaagcc ggagacctcc
    12421 gatttaattg agaaatatgg ggtgtttaaa ttacacggcg atcgtaaatt aatggagcat
    12481 atagataaac tgttggagcg ttttgtggtt caacaccgta tgaaaattcc aacgggtgag
    12541 gcgtaccaac cttgctatga aattgtaaaa gggtaatgct aacaaggggt aaggtatgta
    12601 tttaaagcat attgaaatca gtggctttcg tggtattaac catttatcgc tccagctacg
    12661 accaaatatg gtattgattg gcgaaaatgc gtgggggaaa tccagtctga ttgatgcatt
    12721 aagcctgatt tttaaccttg agcaggcgtt gtatcaattt cagttcaaag atttccatat
    12781 tcaatacacc gataccccca accaagtgcg ggacattcaa ctggtgttta ccttttgtga
    12841 agagcatcag cacgatttag cggtgcaatt tcccgcttat ttggcacaag ccgcgtttta
    12901 tattgataat caccgctgtg tttcgcttgc cgtaaccgga aaattacacg gagagcagat
    12961 tagcaccgac tatcaatttg tggatcaaag cctaaaaccg atccagatag aacaagcgga
    13021 aaacgccatt cggcagttta tttaccatca ccctgtttat cgcctgcgtg atgcaaggct
    13081 caataacagg gtgcataatg aattattact taaaggatcg tctcaacttg aagacgattt
    13141 tcaacgtgaa ttaaacgccc tctcttcgct actgaaatac tattttctaa ccagccaaag
    13201 tcgctatttg atcaaaacca gtatgcaaga caccgcattg tggtgggaaa aagtaaaatc
    13261 cctctgttta cgcctaaaac agcagccgga attggtcgaa tctgctcagc agcatatttc
    13321 tactctattt ttgtttaatc ctagatctac agtaatagaa aagccgatta ttttatttga
    13381 agatctgaat gctcaactac accctcgaat gattgcgatt ttttgggaac tgctcggttt
    13441 tttacccagc caacggatca ccactactaa ttctattgaa ttgttatcgc aagtgcctct
    13501 gcgtgaaatc tgccgtttgg tgcgtcatca cgatcatacc caagcctatt ggcttgaacg
    13561 ccacagttta ggcaaggaag atttgcgaaa attaaccttt catattcacc ataatcgtgg
    13621 cttggcactg tttgctaaag cgtggatttt ggttgagggg gaaacggagg tttggatttt
    13681 gcaagagctg gcgagattat tagatattca tttggaaatg gaagggatca aaatcgttga
    13741 atttgctcag tgtggcttac gtccgttaat taaatacgcc agagcaatgg ggatcgaatg
    13801 gtatgtgctg actgacggtg acgattccgg caaacgttat gcagatacgg taaaaagtat
    13861 ggaagaggat tttgctcacc ggctcacgat gttgccacaa aaagatatcg aacatttttt
    13921 ctacaaagca ggcttgcgga atgtgtttat acagcttgca aattggcgtt cacaagaaaa
    13981 atatccggtg tcctacatca ttaaacgagc gattcaacga agctcaaagc ctgatttagc
    14041 cattgcatta gccaatgaga tggggcaacg gggagagcat tcaattccaa ctttatttaa
    14101 acaattattt gcagatgtgc tggcattgat aaacaaagta tagaatacaa gcggttaaat
    14161 ttgacaaaaa attgccaatt ttgaccgctt gtttgcttgt gatgaaaacc aatcatacaa
    14221 aactctaatt tatttcaagt gcaagctatt attttatgcg ttatgcttat ttggaataaa
    14281 aaaatcgggt tagttgattg acatagcatt ctagacgtct aaaataacca aaaataatag
    14341 ttaattgaat gtggataaat agaaaatgat tcagctgaaa aatatcagca aacaatttga
    14401 ggtaaagggc aaaaaaatta ccgctctgga taatgtaaac ctagaagtac caagaggcac
    14461 tatttatggt gtcattgggg catcaggggc aggaaaaagt accttaattc gctgtgtaaa
    14521 tttattagaa cgcccaacaa tcgggcaagt gattgtcgat gggcaagatt taacggcaat
    14581 gtcggataaa gagttgattc acgctcgccg taatattgca atgattttcc aacattttaa
    14641 tttgctttca tcacaaactg tatttgaaaa cgtggcgtta tcgttgcgtt taagcaatac
    14701 gccaaaagag caagttgaga agaaagtcaa tgagctgttg gatttagtgg ggttaacaga
    14761 tcgtaaagat gtttaccctg caaatctttc cggtgggcag aaacagcgtg tagcgattgc
    14821 tcgtgcgtta gccagcgatc cacacgtttt gttgtgtgat gaagcgacca gtgcgttaga
    14881 tccggcgact acgcaatcca ttttgcagct attaaaagat attaataaac gtcttggttt
    14941 gacgatttta ttaatcactc acgaaatgga agtggtaaaa cgcatttgtg accgagtagc
    15001 agtgattgat aaagggcagt tgattgaatc tggctcggta agtgaaattt tctcgaatcc
    15061 gaaaaccgaa ttagctcaga aatttattca atcgactttc cattttgaat taccgcaaga
    15121 atataccgag cagctttcaa gttcgccgac tgaacatagt aagccgatta ttaaatttga
    15181 gtttaccgga cgttcggtgg atgcaccttt gctttcaatg gcatcgaaga aattcggcat
    15241 tgattttagt attttgatgt cgcaaattga ttatgcaggc ggggtcaaat ttggatttgt
    15301 aattgcagaa gtgagtggta atccggattc cattgcagag gcaaaatttt atttaattga
    15361 taacaatgta aaagtagagg tgttaggcta tgtgggctga ttttatgcag gagatgacgc
    15421 cacagatgtg gagcttagta tgggaatcta cttttgaaac cgtttatatg ggctttgtgg
    15481 caacggcatt ggcggtagtc atcggtttac cgattggttt cttggcgttt ttaaccggta
    15541 aaggcgaaat tttagaaaat ccgagattac accaagtgtt agatgtcgtt attaacatcg
    15601 ggcgttcgat tccgttcatt attttattga ttattttgtt gccatttact cgcttagttg
    15661 tgggcacaac attaggcaca acggcagcga ttgttccttt aagtgtttcg gccattccgt
    15721 tttttgcccg tttaacttca aatgcgttgc ttgaaattcc gtccggttta acagaagcgg
    15781 caaaatcaat gggagcaaca aattggcagg tagtgacaaa attttattta ccggagtcat
    15841 taccgatttt gattaatggc attacgctaa cgctggttgc tttaattggc tactcagcaa
    15901 tggcgggggc tgttggtggc ggcggtttag gcaatttagc gattagctat ggcgaacacc
    15961 gtaatatggt gtatgtgaaa tggattgcta ccattattat tgttgcgatt gtgatgatta
    16021 gccaaaaatt gggtgatcat ttagcaaaac gttacgatca tcgttaattt tatttaaaaa
    16081 gaggtttcta tgagtttcaa gaaaatttta ggcgttgcat tggtttctgc attagcatta
    16141 accgcttgta aagaagagaa aaaggcagaa tctaccgctg ctccggcagc tcaagctccg
    16201 gctaaaatca aagtaggggt aatgtcaggc cctgagcata ccgttgcaga acgtgcagca
    16261 cagattgcaa aagaaaaata tggtttagaa gttgagttcg ttttatttaa cgactacgct
    16321 ttaccgaata ctgcagtaag taaaggtgat ttagatgcaa acgcattcca acacaaacca
    16381 tatttagata aagacagcca atcaaaaggt ttaaacaact tagtgattgt gggtaacacc
    16441 tttgtttatc cgttagcggg ctactctaaa aaagtgaaaa atgtgtctga gttagcagaa
    16501 ggtgcggtaa ttgcagtacc aaatgatcct tcaaacttag ctcgtgcttt gattttatta
    16561 gaaaaacagg ggttaattaa attaaaagat aataccaatt tattctcaac ttcagtggat
    16621 attatcgaaa atccgaaaaa cttaaaaatt aaagaagtgg atacttcaat tgccgcaaaa
    16681 gcgttagatg acgtagattt agcggtggta aataacactt atgccgggca ggtaggctta
    16741 aatacccaag atcacggtgt atttgttgag tctaaagatt caccgtatgt gaatattatt
    16801 gtggctcgcc aagacaataa agatgcagct aatgtacaaa actttattaa atcttaccaa
    16861 accgaagaag tgtaccaaga agcacaaaaa cactttaaag atggtgtagt aaaaggttgg
    16921 taatttagct gatttttact taaatggcga ttaagcgcta ggttaatcgc cattttcatc
    16981 tttaaaatat aggaaggagc aaacaatgaa ctttaaaaaa ttattaggtg tggcgttagt
    17041 atctgcctta gcacttactg cgtgtaaaga tgaaaaagca caagcacctg ctacaacagc
    17101 taaaactgaa aacaaagccc cattaaaagt gggtgtgatg accggccctg aagcccaaat
    17161 gaccgaagtg gcagtgaaaa ttgcaaaaga gaaatatggc ttagatgtag agttagtgca
    17221 gtttactgaa tacactcaac caaatgccgc acttcattct aaagatttag atgctaacgc
    17281 gttccaaacg gtgccttatt tagagcaaga agtgaaagat cgtggttata aattagcgat
    17341 tatcggcaat acgctagtat ggccaatcgc ggcttattct aaaaaaatta aaaacatttc
    17401 cgagttaaaa gacggagcga ctgttgcgat tccaaacaat gcaagtaata ctgctcgtgc
    17461 gttattattg cttcaagctc acggtttatt gaaattaaaa gatccgaaaa atgtgtttgc
    17521 taccgaaaac gatattatcg aaaacccgaa aaatatcaaa atcgtacagg cggatacctc
    17581 acttttaacc cgtatgttag atgatgtaga acttgcggta atcaacaaca cttacgcagg
    17641 tcaagctggg ttaagtccgg ataaagacgg tattattgtg gaatctaaag attcaccgta
    17701 tgtgaattta gtggtaagtc gtgaagataa taaagatgac ccacgcttac aaacttttgt
    17761 gaagtcattc caaaccgaag aagtattcca agaagcgtta aaattattta acggtggtgt
    17821 ggtgaaaggt tggtaatcag ttggacggca tattctgccg tccttttctt aaaaggagaa
    17881 acagataatg aaaataatga aattagccgg tgcagttgca attttctcgc tttttttaac
    17941 cgcttgtaat gataaagccg aaaagttgaa agtcggtgtg atttccggcc ctgaacataa
    18001 ggtaatggaa gtggcggcaa aaattgcaaa ggaaaaatat aaccgtgatg ttgaattagt
    18061 ggtatttacc gattatgcca cgcctaatgc agctttagat aaaggcgatc ttgatttgaa
    18121 tgctttccag cataaacctt atttagataa ccaaattcag gaaaaaggct ataaattagt
    18181 gccggtcggc aatacttttg tttatccgat tgcggcttat tccaaaaaaa ttaaatcgct
    18241 ggcagagttg aaagatggtg atactattgc agtgcctaat gatccgacta atttagcccg
    18301 tgctttaatt ttattggaaa aacaagattt aattaagctg cgagcagatg caggcttaaa
    18361 agcaaccagt gtggatatta ttgaaaaccc tcgtaaattg gtgatccaag aaattgaagc
    18421 accattattg cctcgaacgt tggacgatgt tgccttttcg attattaata ctacctacgc
    18481 agggcaaaac ggtttaacgc caaccaaaga cggaatattc gttgaagaca aggattcgcc
    18541 ttatgtgaat ttaattgttg cccgtgaaaa taaccaacat tctgaagccg taaaagattt
    18601 ggtgaaagcc taccaaacag aagaggtgta taacaaagcg aatgaagagt ttaaaggggc
    18661 gatgataaaa ggctggtaat tgaagataaa taaggcatag attcctatgc cttacttttt
    18721 atgttacaga cctgctccgg ctcttaatgc ttcggctttg tcagtttttt cccaaggaaa
    18781 atgtttacga ccgaagtgtc cgtaggcagc ggtttcacgg tagattggtt tgattaaatc
    18841 taacattttg attaagccat acgggcgtaa gtcaaagttt tggtagatta atttcacaag
    18901 tatttcgttg ctcactttac ctgtgccgaa ggtttcgacc ataattgatg ttgggtcagc
    18961 caccccgata gcataagaaa gttggatctc acagcgatcg gctaagcctg cggcaacgat
    19021 attttttgcg acataacgag cagcataagc agcagagcga tccacttttg acgggtcttt
    19081 accagagaat gcaccaccac cgtggcgagc cgcaccaccg taggtatcta caatgatttt
    19141 acgcccggtt aaaccacagt cacccattgg accgccaatc acaaaacgac cggttgggtt
    19201 gatgaaatat ttggtgtttt ggctgagcca ttcgcttggt agtaccggtt tgatgatctc
    19261 ttccatcacc ccttcaatta actctttttg cgaaatatgc tctgcgtgtt gtgtagaaag
    19321 cactacggca tcaatgccga taattttatt gttctcataa gcaaatgtta attggctttt
    19381 agcgtcaggg cgtaaccaat cgagtttgcc cgatttacgc acttttgact gctgttccat
    19441 taagcggtgt gcgtaagtaa ttggagccgg cattaacacc tcggtttcat tggtagcgta
    19501 gccaaacata atcccttggt cgcccgcacc ttgctctaac ggatcggcac ggtcaacgcc
    19561 ctggttgatg tccggagatt gtttaccaat cgcatttaat accgcacaag agtgagcatc
    19621 aaagcccata tcagagtgag tatagccgat gtcgcaaatc acttggcggg ttaagttttc
    19681 aatatccacc cacgcagagg tagtgatttc tccccctact aatgccatac cggttttcac
    19741 ataagtttca caagcaacgc gtgctttagg gtcttgtttt aaaatttcat ctaataccgc
    19801 gtctgaaatt tggtctgcga ttttatccgg atgcccttct gaaaccgatt cagaagtaaa
    19861 taaattaatt gccatttgta ttcctctcta tcttaaatat ggattattaa
//
LOCUS       DANLZD010000033        19743 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.033, whole genome shotgun sequence.
ACCESSION   DANLZD010000033 DANLZD010000000
VERSION     DANLZD010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19743
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.033"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            200..946
                     /gene="znuC"
                     /locus_tag="PXE26_000884"
     CDS             200..946
                     /gene="znuC"
                     /locus_tag="PXE26_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter ATP-binding protein ZnuC"
                     /protein_id="HDL5593488.1"
                     /translation="MVSLENIEVSFNGQKALQNINLSIYPNSITTIVGPNGGGKSTLL
                     KILLKLLSPNKGKVIHQKGLKIGYVPQKLHLEPSMPITVYRFLALKPHTTKEMINQAL
                     DLFSITHLTENSMQKLSGGELQRVLLARAILDRPQLLVLDEPMQGVDIIGQTELYQLL
                     NKTRDLLNCAILMVSHDLNIVMANTDEVLCINKHICCAGSPEVITHDPSFIHFFGDQF
                     ARNVAFYSHKHNHHHNLHGDICLGECSCEH"
     gene            1111..3924
                     /gene="sucA"
                     /locus_tag="PXE26_000885"
     CDS             1111..3924
                     /gene="sucA"
                     /locus_tag="PXE26_000885"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HDL5593489.1"
                     /translation="MQYTHFDDWLASSALGGANQSYIEEIYEQYLENPANVDESWRNI
                     FDSFPKTPQVEQAHTPIRDYFRKLAREQQPQSVTIIDPEAGAKQVRLLQWINAHRFRG
                     YLEAKLDPINYYRWKTSSVPELDYKYHGFTDEDLNETFTVGRYVYDKDTMKLSELDKA
                     LKETYLGPIGLEFMHVQDIEQRNWLQAKMESVLNKPLFTKAEKLNLLSELTAADGLER
                     YLGAKFPGAKRFSLEGSDAFIPMMKEIIRHASRQGMTDVVLGMAHRGRLNMLVNVFGK
                     RPAELFDEFAGKHADESRTGDVKYHQGFSSNFAVDDKNVHLTLAFNPSHLEIVSPVVI
                     GSVRARQERMRDIEHEKVLAVTVHGDSAVAGQGVVQETLNMANVRGYKVGGTIRIVIN
                     NQIGFTTSNPNDTRSTEFCTDIAKMIQAPIIHVNGDDPEAVAFAARMAVEYRTKFKRD
                     IFIDLISYRRHGHNEADEPLATQPMMYSIIKKHPTPRKVYADRLITEGVLTNEQEIEM
                     LNLYRDALDNGECVVPEWREMDMAAVDWLQYLNYDWTALYESKFPEERFLTIAKRVCE
                     YPASLKAHSRVEKIYTDRKEMYEGKKLFDWGMAETMAYATLLDEGTHVRLSGEDAGRG
                     TFFHRHAVIHNQNDGTGYVPLTQLHANQGRFQVWDSVLSEEAVLAFEYGFATTDPKTL
                     TIWEAQFGDFANGAQIVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARVERY
                     LQLCAQQNIQVCVPSTPAQVYHMLRRQAIRKMRRPLVAITPKSLLRHPLAVSSLDELI
                     NGSFQNVIGELDNIDPKQVKRVVMCSGKVYYDLIEKRRENNQTDVAIIRIEQLYPFPL
                     EEMQQILEPYAHVKDFVWCQEEPLNQGAWYCSKHNFEASLPEDAKLTYAGRPASASPA
                     VGYPSLHAKQQKQLVEDALTIAE"
     gene            4027..5256
                     /gene="odhB"
                     /locus_tag="PXE26_000886"
     CDS             4027..5256
                     /gene="odhB"
                     /locus_tag="PXE26_000886"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HDL5593490.1"
                     /translation="MTIEILTPDLPESVADATVATWHKKVGDNVKRDEILVEIETDKV
                     VLEVPASSDGILAEITQEQGATVVSKQSLGKLVVAKAGDISSATIEQKTESTPSDRKH
                     AAIENSHANADDQGPAIRRLLAEHDLQAADIQGSGVGGRITREDIEKEIAKRVQINQV
                     KGSATSQNTVSTVAFNSRSEKRVPMTRLRKRIAERLLEAKNTTAMLTTFNELDMQPIM
                     NLRKTYGEKFEKQHGVRLGFMSFYIKAVVEALKRYPEINASIDGDDVVYHNYFDISIA
                     VSTPRGLVTPVLRDCDKMSMADIEKKIKELAEKGRDGKLTVEDLTGGNFTITNGGVFG
                     SLMSTPIINPPQSAILGMHAIKDRPVAIDGQVVIRPMMYLALSYDHRLIDGKESVGFL
                     VAVKELLEDPTRLLLEI"
     gene            5549..6709
                     /gene="sucC"
                     /locus_tag="PXE26_000887"
     CDS             5549..6709
                     /gene="sucC"
                     /locus_tag="PXE26_000887"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HDL5593491.1"
                     /translation="MNLHEYQAKQIFKQYGLPVSQGIACKTAEEAVEAIKQLQGEQWA
                     IKCQVHAGGRGKAGGVKLVRNEAEVREFADKWLGKRLVTFQTDANGQPVNTLYLEETC
                     NIDRELYLGAVVDRSAQKVIFMASSAGGMNIEEVAEKTPELIHKAVIDPLTGGQGYQG
                     RELAFKLGLKGDEVKQFADIFVKLANLFVEKDLALLEVNPLVITKEGQLLCLDAKMSI
                     DSNALYRHPELKELQDPSQDDEREAEAEKWNLNYVALDGNIGCMVNGAGLAMGTMDIV
                     KLYGGKPANFLDVGGGATKERVAAAFKLILSDPNVKAVLVNIFGGIVRCDLIADGVIA
                     AVNEVGVNVPVIVRLEGTNAAQGREILANSGLSILAASSLKQAAELAVKSAN"
     gene            6718..7587
                     /gene="sucD"
                     /locus_tag="PXE26_000888"
     CDS             6718..7587
                     /gene="sucD"
                     /locus_tag="PXE26_000888"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HDL5593492.1"
                     /translation="MSILIDKNTKVICQGFTGGQGTFHSEQALAYGTQLVGGVSPNKG
                     GTTHLGLPVFNTVREAVEATGATATVIYVPAPGCKDAILEAIDAGIQLIVCITEGIPT
                     LDMLQVKQRLNQTGVRMIGPNCPGVITPDECKIGIMPGNIHKKGNIGIVSRSGTLTYE
                     AVKQTTDEGFGQSTCVGIGGDPIPGSNFIDILKLFQDDPETEAIVMIGEIGGSAEEEA
                     AAFIKENVTKPVVSYIAGVTAPKGKRMGHAGAIISGGKGTADEKFKILEDAGVTTVRS
                     LAEIGSALRKILG"
     gene            complement(7658..9103)
                     /locus_tag="PXE26_000889"
     CDS             complement(7658..9103)
                     /locus_tag="PXE26_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine:cation symporter family protein"
                     /protein_id="HDL5593493.1"
                     /translation="MDSIILFFESVLTWIVNTIDGPLWDVTIILLLGAGLFFTLTTGF
                     VQLRLLPQSLREMWGGRSTEGKSLTPFQAFTTGLASRVGVGNIGGVATAIALGGPGAV
                     FWMWITALMGMSSAFAESSLAQLYKTKDPNGMFRGGPAYYITRGLKLPSLAIAFAVTL
                     IFTFGFAFNAVQSNSIVEATKNAWDWNPVYVGMTLVVITGLIISGGVKRIGKVSAQVV
                     PMMALFYLIIAVIILGMNIEKVPSIISLIIESAFDFSAAAGGTFGALVSKTMLMGIKR
                     GLFSNEAGMGSAPNSAATSDAKHPASQGLIQMLGVFVDTIVVCTCTAVIILMSNNYGG
                     ETLRGISLTQSALQFHLGEFGLHFLAFVILLFCFTSIIGNYAYAETNIRYIKNSPWFV
                     WGFRAIVLFFVYFGAVRDGGIVWAFADTVMASMAVINLVAILILAPIVWIILKDYLRQ
                     VKSGKEPVFRIEEHQDLIHKGVDPLIWKSKE"
     gene            complement(9208..10194)
                     /locus_tag="PXE26_000890"
     CDS             complement(9208..10194)
                     /locus_tag="PXE26_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel/cobalt transporter"
                     /protein_id="HDL5593494.1"
                     /translation="MRLKATYWGMIVIGFLSLFALYQLYPMILFKVMEWQKNFNLQLS
                     ASLNELAENQSKAGITLVFISFLYGVFHAVGPGHGKFILSSYLSFEKTKLNQAMKITF
                     ASALVQGLVAISLVTVIVVIFTLSRQYFNLTLKWVERGSFGLMILFGIYWCYQVYRTV
                     NRARKPIIKSIRISQKKAGKLPLVTQKGHIHTENCSCRHKHLPTSNEMQQVRDWKAQL
                     MLVLSIGSRPCSGAILVLFLSYTLNLYAWGVISALAMAVGTGLTLSLFAYLVIIARNK
                     AVKVSQWYFSAQINRNIVWILKFTLGLALILFGMVLFHSSFIDAGTGVFFKR"
     gene            complement(10185..10823)
                     /locus_tag="PXE26_000891"
     CDS             complement(10185..10823)
                     /locus_tag="PXE26_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1007 family protein"
                     /protein_id="HDL5593495.1"
                     /translation="MKFIKTIITLIALYSMPVFSHPHSFVDLKTNVIVEGSMLKSFQM
                     EWMLDEIASSELIYEVKNSQDKEKTQQNITAEMVQTALQNHYFSTLYDSQNQPIKFTT
                     KPTATRFEIKNNRVIFYITFHLAKPHELKQSKVRFYTYEPSYYIAMEYNRPADVNTSN
                     ASCKATLVQPQVDSKLRLYASGLDKNQSLDMPENGDYSLGAQFAQKVEIICD"
     gene            complement(10884..11262)
                     /gene="rnpB"
                     /locus_tag="PXE26_000892"
     ncRNA           complement(10884..11262)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="PXE26_000892"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(11391..11678)
                     /gene="rplY"
                     /locus_tag="PXE26_000893"
     CDS             complement(11391..11678)
                     /gene="rplY"
                     /locus_tag="PXE26_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HDL5593496.1"
                     /translation="MSFKFEAEVRSAQGKGASRRLRHNGQVPAIIYGGNAEPVSIILD
                     HDKVNNAQVHDSFYNEVLTIVVAGKEEQVKVQAIQRHPTKPKLVHLDFKRA"
     gene            complement(11830..13098)
                     /locus_tag="PXE26_000894"
     CDS             complement(11830..13098)
                     /locus_tag="PXE26_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme"
                     /protein_id="HDL5593497.1"
                     /translation="MSDLKQQALDFHEFPIPGKISVTPTKALDTQHDLALAYSPGVAE
                     PCLAIEKDPSASYRYTARGNLVAVISNGTAVLGLGNIGALASKPVMEGKGVLFKKFAG
                     IDVFDIEINETDPEKLVEIIASLEPTFGGINLEDIKAPECFYVEQKLRERMGIPVFHD
                     DQHGTAIITGAAVINGLQVVGKAISEVRLVVNGAGASAIACTNLLRSLGVKKENITMC
                     DSKGVIFQGRGDKMDETKQFYAIEDNGWRTLADAVANADVFLGCSKGGALTQEMVKTM
                     AKDLLILALANPVPEITPAEAKAVRPDAIVCTGRSDFKNQVNNVLCFPFLFRGALDVG
                     AKTINEEMKMAAAHAIAELAKEPVPFEVISTYGELSFGPEYIIPTPFDPRLIVNVSIG
                     VAKAAIQSGVATRPITDWEAYAEQLKKLVA"
     gene            complement(13255..14166)
                     /locus_tag="PXE26_000895"
     CDS             complement(13255..14166)
                     /locus_tag="PXE26_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RimK family alpha-L-glutamate ligase"
                     /protein_id="HDL5593498.1"
                     /translation="MKWLMLCREPRLYSCCRIKAACEAKGIELDILDQNRMLLGLENG
                     EFKIYYQAGESYDNNRPEPVLLPNYDGILPRFGTGSTEMGCSVLRHFEAKGIPVLNHS
                     AAFALARDKWRTLQKLAKHNLPVPNTNFAGHLVSVKSQLNQFAFPLISKVLNGSQGNG
                     VMLFEGKNNAEAVLATFRQVNEPYLCQQFVGDAKGQDIRAFVIGNEVVAAMSRTSVTG
                     DFRANIHQGGTAQPIELTQMERALAIKATKTIGLDIAGVDFLRTEKGVVILEVNASPG
                     FEGIERVNDVDIASEMVSYFINKMKNA"
     gene            complement(14163..14882)
                     /gene="nfsA"
                     /locus_tag="PXE26_000896"
     CDS             complement(14163..14882)
                     /gene="nfsA"
                     /locus_tag="PXE26_000896"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NADPH nitroreductase"
                     /protein_id="HDL5593499.1"
                     /translation="MQSKPTLETILSHRSIRKFTEQPISEEIFQILIEAGKAASSSNH
                     LQCVTVIRVTDRQIRETLKAVSGMQYVVDCAEFLVFCIDFNKHKQLVPESQLEWAEVS
                     LIGAVDTGILAQNVFLAAESLGLGAVYIGALRNDIERVSKALNLPEYCVPLVGMCLGY
                     PAQEPAIKPRLPNSLVCYNNQYQDFDWTEFAKYNENLTAYYQARIGEPQQWQAAIHKT
                     LDKPVRPHILPFFNQKGLLKK"
     gene            complement(14894..15679)
                     /gene="mtgA"
                     /locus_tag="PXE26_000897"
     CDS             complement(14894..15679)
                     /gene="mtgA"
                     /locus_tag="PXE26_000897"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HDL5593500.1"
                     /translation="MEQSMAKRNKRFLSSLLKKIGLFFIPRKIKSKLGWLWFGSSRLL
                     TFGGTFFLIPILIFSVLPVPYSAYMVQKKVENLVQGKSYPIKKEWVSLNEISWQMQMA
                     VIASEDQKFESHFGIDLQAIETALKLNAKSKKVRGGSTISQQTVKNMFLWHGQSWLRK
                     GIEVPLTLLVENVWSKDRILEVYLNIAEFGNGIFGVEAAAKHFFKKSAKQLTLQESAL
                     LAASLPNPLVFRVDKPGPSMQKRQAWIMRQVSLLDGKNYLDKL"
     gene            complement(15654..15974)
                     /gene="trpR"
                     /locus_tag="PXE26_000898"
     CDS             complement(15654..15974)
                     /gene="trpR"
                     /locus_tag="PXE26_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon repressor"
                     /protein_id="HDL5593501.1"
                     /translation="MKTLYNQRDPNEWTQFLALLEQAVAEDKLEPFFSMFLTADERGS
                     LGLRLQIVQALLKGEDSQREIQQNLNTSAATITRGSNMLKTLDQDFLQWLNGKVNGTV
                     NGKA"
     gene            complement(16054..16695)
                     /gene="lolA"
                     /locus_tag="PXE26_000899"
     CDS             complement(16054..16695)
                     /gene="lolA"
                     /locus_tag="PXE26_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HDL5593502.1"
                     /translation="MKTLFKKSVFGLALFGLANVALADAQSVAELQRRLEQVSQYSAD
                     FDQTVRSSKGKQIQQGKGKFQVKRPNLFRMDTKSPQENLIVSDGKDLWFYDPFVSQVT
                     VNTVQDAVNNTPFVLLTSGDKSHWDQYDVSQSADTFVLKPKSKKSNLKQFDVRIDQSG
                     LLKGFSTIERDGQSNLYVLRNITTGGVSSDLFKFSVPKGAELDDQRGGKKSKK"
     gene            complement(16806..19664)
                     /gene="polA"
                     /locus_tag="PXE26_000900"
     CDS             complement(16806..19664)
                     /gene="polA"
                     /locus_tag="PXE26_000900"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HDL5593503.1"
                     /translation="MATIAKNPLVLVDGSSYLYRAFHAFPPLTNRLGEPTGAMYGVLN
                     MLKSLISQVNPSHIAVVFDAKGKTFRDELFKQYKSHRPPMPDDLRPQIEPLHRIIKAL
                     GIPLISIEGVEADDVIGTLAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLL
                     DREGVIEKYGIPPELIIDFLALMGDSADNIPGVKGVGEKTALALLQGIGSLEQIYANL
                     DQIATLSFRGAKNFAPKLEAEKANADLSYLLATIKTDVELDVTHDQLLTQPQDRAELA
                     QLFEHYEFKRWLNEVNQNANPVTQTSAEKVPNNYQVTQAVRNEENVANVVEIDRSKYE
                     TVDTEQKLSAWIEKLTAARLIAVDTETDSLDAMSANLVGISFALENGEACYIPLGHKQ
                     KAQPQQADMFGDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDL
                     TIFANYGIELQGVAFDTMIESYTQNSTGRHNMDDLAARYLGHKTIPFEELAGKGKNQL
                     TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIER
                     NGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTFNLASTKQLQEILFEKLGLPVLK
                     KTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHT
                     SYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMA
                     HLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGL
                     SNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSG
                     NAILRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDNDEIKMIMQVHDELVFEVKA
                     DKIDHYSQLIKTEMEKAISLKVPLIAEVGVGENWDEAH"
BASE COUNT         5911 a         4362 c         3816 g         5654 t
ORIGIN      
        1 tactaaaatt tacatatttt tctgagtaga ctattttacc aagaaaaaat tcatttaatc
       61 tattgtcaca acacgaaaaa tcagctaatt ttaactcaat acccctaatt tttttatatc
      121 aatgaaaatc catcatctta aaccgaatct aaataccact acatttgaac tattcaaaca
      181 gaatttatcc gcgacatcac tggtttctct tgagaatatt gaagtgtctt tcaatggaca
      241 aaaagcatta caaaatatta atttatctat ttatcctaac tctatcacga cgatagtcgg
      301 gccaaatggt ggaggaaaat ctaccctgct taaaattttg ctaaaattac ttagcccaaa
      361 taaaggaaag gttattcatc aaaaaggact caaaattggc tatgtaccac aaaaattgca
      421 tttagaaccc tcgatgccca ttactgttta tcgatttctt gcgctaaaac cacatactac
      481 caaagaaatg attaaccaag cactagatct gttttctatt acccatctca ctgaaaatag
      541 tatgcaaaaa ttatcgggtg gtgaacttca acgtgtattg ctggctcggg caattttaga
      601 tcgtccgcaa ctcttagtgt tagatgaacc aatgcaaggc gttgatatta taggccaaac
      661 cgaactctat caattactta ataaaacaag ggatctcctt aactgtgcta ttttaatggt
      721 ctcacacgac ttaaatattg tgatggcgaa tacagatgaa gtgctttgca tcaataaaca
      781 tatttgttgt gccggaagcc ccgaagtcat tacacacgat ccgagcttta tccatttttt
      841 tggcgaccaa tttgcacgta atgttgcatt ttattcacat aaacataacc atcaccataa
      901 tttacatggc gatatctgcc ttggtgaatg tagttgtgag cactgatagg cgtccttttt
      961 accaaatgtt taaaatttgt aaaaataatg ctaaaaataa ccgcttgcag cacaagattt
     1021 atctaaaaat cagacttact tcacatttta tttgcttaaa ttggagtata ataagggcgt
     1081 gatttcatac cacaaacagg tcaggtcttt atgcaatata cacattttga tgattggctt
     1141 gcatcatctg cattaggcgg tgcaaaccaa tcttatatag aagaaattta tgaacagtat
     1201 ctagaaaatc cagcaaatgt tgatgaaagc tggagaaaca tctttgattc atttcctaaa
     1261 actccccaag ttgaacaagc tcacacccct attcgtgact atttccgtaa attagcccgt
     1321 gaacagcaac ctcaatccgt cactattatt gacccagaag caggggcgaa acaagttcgc
     1381 ttactgcaat ggattaacgc tcaccgtttc cgtggctatt tagaggcaaa actagaccca
     1441 attaactatt accgttggaa aacctccagc gtgcctgaat tggactacaa atatcacggc
     1501 ttcaccgatg aagatctcaa cgaaactttt acggtcggtc gctatgtcta tgataaagac
     1561 acaatgaagc tcagcgaact ggataaagcc ctaaaagaaa cttatttagg gcctattggt
     1621 ttagaattta tgcacgttca agatattgaa caacgcaact ggcttcaagc caaaatggaa
     1681 agcgtgctaa acaaaccgct gttcaccaaa gcagaaaaac tgaatttatt aagcgaattg
     1741 accgctgccg atggtttaga gcgttactta ggggcaaaat tcccgggggc aaaacggttc
     1801 tcattggaag gtagtgatgc ctttattccg atgatgaaag aaattatccg ccacgcttcc
     1861 cgtcaaggta tgaccgatgt ggttttaggt atggcacacc gtggtcgttt gaatatgtta
     1921 gtgaacgtat ttggtaaacg cccggcagaa ttgtttgatg aatttgccgg caaacacgct
     1981 gatgaaagcc gcacgggcga tgtgaaatac caccaaggtt tctcctcaaa ctttgccgta
     2041 gatgataaaa acgttcacct tacccttgct ttcaacccat cgcatttaga gattgttagc
     2101 ccggtggtaa tcggctcagt gcgtgcaaga caagaacgta tgcgtgatat cgaacacgaa
     2161 aaggtgcttg cggtgaccgt tcacggtgac tctgcagtgg cagggcaagg tgtagtgcaa
     2221 gaaaccttaa atatggcaaa tgttcgtggc tataaagtag gaggcactat ccgtattgtg
     2281 atcaacaacc aaatcggatt taccacctct aacccaaatg acacccgctc caccgaattt
     2341 tgtaccgaca ttgccaaaat gattcaggca ccgattattc acgttaatgg tgatgatccg
     2401 gaagctgttg cctttgcagc gagaatggct gtggaatatc gtactaaatt taaacgtgat
     2461 atttttattg atttaatctc ttaccgtcgt cacggtcata atgaagccga tgagccttta
     2521 gcaactcagc caatgatgta tagcatcatc aaaaaacacc cgacacctcg caaagtctat
     2581 gcggatcgtt taattaccga aggtgtttta accaacgagc aagaaatcga gatgttaaac
     2641 ctgtatcgtg atgccttaga caacggcgaa tgcgttgtgc cggaatggcg tgaaatggat
     2701 atggcagcgg tcgattggct acaatatctc aattacgact ggactgccct atacgaaagt
     2761 aaattccctg aagaacgatt cttaaccatt gccaaacggg tgtgcgaata tccggcttcg
     2821 cttaaagctc attctcgggt tgaaaagatc tacactgatc gcaaagagat gtatgaaggc
     2881 aagaaattat tcgactgggg tatggctgaa acaatggcat acgctacttt gttagacgaa
     2941 ggcacacatg ttcgcctttc aggagaagat gccggacgtg gcactttctt ccatcgccat
     3001 gcggtaatcc ataaccaaaa tgatggaaca ggctatgtgc cacttactca actgcacgcc
     3061 aatcaagggc gtttccaagt atgggattcc gtactctctg aagaagcggt actcgccttt
     3121 gaatatggct ttgccactac cgacccgaaa acactgacca tttgggaagc tcaatttgga
     3181 gatttcgcta acggagctca aattgttatc gaccaattta tcagctcagg cgaacaaaaa
     3241 tggggcagaa tgtgcggttt agtgatgtta ttaccacacg gctatgaagg tcaagggccg
     3301 gaacactcct ctgcccgagt ggaacgctat ttacagcttt gtgctcagca aaatattcaa
     3361 gtttgcgtgc catcaacacc ggcacaggtt taccatatgt tacgccgtca agcgatccgc
     3421 aaaatgcgtc gcccattggt tgcaatcaca ccaaaatcat tgctacgcca cccacttgcg
     3481 gtgtcatctc ttgatgaatt gattaacggt tcattccaaa atgtgattgg cgagctcgat
     3541 aatatcgatc ctaaacaagt caaacgtgtg gtgatgtgtt cgggtaaagt gtactacgac
     3601 ttaattgaaa aacgccgtga aaataaccaa acggacgttg ccattattcg tatcgaacag
     3661 ctctacccgt tcccacttga agaaatgcaa caaattctcg agccttacgc tcacgttaaa
     3721 gactttgtct ggtgtcaaga agagccacta aaccaaggtg cgtggtattg cagcaagcac
     3781 aattttgagg cttctctgcc ggaagatgca aaattaactt acgcaggcag accggcttct
     3841 gcttcaccgg cggtgggtta tccatcgtta cacgcaaaac aacaaaaaca acttgttgaa
     3901 gatgctttaa cgatcgctga ataataaaat gggcgtatat acgccctaca agcggttcac
     3961 ttttaaccaa attttacaat ttacgctgtc ggagttttaa aactctctcg aaaaaaggaa
     4021 taagttatga ccattgaaat tttaaccccc gatttacccg aatctgttgc cgatgcgacc
     4081 gttgccactt ggcataaaaa agtgggcgac aatgtaaaac gtgatgaaat tttagtcgaa
     4141 attgaaacag acaaagtcgt tttagaagta ccggcttcaa gcgatggtat tcttgcagaa
     4201 attacccaag aacaaggtgc tactgttgta tccaagcaat ctctgggtaa attagtagta
     4261 gctaaagccg gtgatattag ctctgcaact attgagcaaa aaacagaatc cacgccatca
     4321 gaccgcaaac acgcagcaat tgaaaacagc cacgcgaacg ctgatgatca agggcctgcg
     4381 attcgccgtt tattagccga acacgactta caagccgctg atattcaagg cagtggtgta
     4441 ggcggcagaa tcacccgcga agatattgaa aaagagattg ccaaacgagt gcaaatcaac
     4501 caagtaaaag ggtctgcaac cagccaaaac accgttagca ctgtagcatt taacagccgt
     4561 agcgaaaaac gtgtgccgat gacacgactc cgcaaacgta ttgccgaacg cttactagag
     4621 gcaaaaaaca ccactgcaat gctcactact tttaacgagc tggatatgca accaattatg
     4681 aatttacgca aaacctatgg cgaaaaattc gaaaaacaac acggtgtgcg tttaggcttt
     4741 atgtcgttct acattaaagc cgtggttgaa gcattaaaac gctaccctga aatcaatgcc
     4801 tccattgatg gcgatgatgt ggtttatcat aactatttcg acatcagcat tgcggtttct
     4861 accccacgag gcttagtcac acctgtgttg cgtgattgcg acaaaatgag tatggcagat
     4921 attgagaaga aaattaaaga acttgccgaa aaagggcgtg acggcaaatt aaccgttgaa
     4981 gacttaaccg gcggtaactt taccatcacc aacggcgggg tattcggttc attaatgtcc
     5041 accccaatta tcaacccgcc acaaagtgcg attttgggta tgcacgctat taaagaccgc
     5101 cctgtcgcca ttgacggaca agtagtgatc cgcccgatga tgtacctagc cttaagctat
     5161 gaccaccgtt taattgacgg taaagaatct gtcggtttct tagtggcagt taaagagtta
     5221 ttagaagacc caacccgtct tcttttggaa atttaatcga aaatatgacc gcttgtactt
     5281 ttagctacaa gcggtctgtt tttaataaaa tttgacaaaa tccgataaac gctctatttg
     5341 agttcccttc tgagccacct gagcgacttt gaatttgtag gaaaaattta gtgtttgagc
     5401 ttacaaggca agcgagttat aaatttttcc gtcaagcaaa ttcaaactaa gcgaagaaag
     5461 tggcgaagca gggtgtgctt tcttttggtt acttttcttt gcacaagcaa agaaaagtaa
     5521 cataaaaaaa accaaacgag gaaactctat gaatctacac gaatatcaag caaaacaaat
     5581 attcaaacaa tacgggcttc ccgtaagcca agggattgct tgcaaaacgg cagaggaagc
     5641 cgttgaggca attaaacaac tacaaggtga acaatgggcg ataaagtgcc aagttcacgc
     5701 tggtgggcgt ggcaaagccg gcggggtgaa actggttcgc aatgaagccg aagtgcgtga
     5761 atttgccgat aaatggctcg gcaaacgctt agttaccttc caaaccgatg ctaatgggca
     5821 accggttaat accttatatt tagaagaaac ctgcaatatc gaccgtgaat tgtacttagg
     5881 tgcagtggtt gatcgctccg ctcaaaaagt gatttttatg gcatcaagtg ccggtggtat
     5941 gaatattgaa gaagtagcgg agaaaacccc tgaattaatt cacaaagcgg taattgaccc
     6001 actcaccggt gggcagggtt atcaagggcg tgaattagca tttaaattag gcttgaaagg
     6061 tgatgaagtt aaacaatttg cggatatttt cgtgaaactg gctaacctat ttgttgaaaa
     6121 agatttagct ttattagagg taaatccact tgtcatcact aaagaagggc aactactctg
     6181 cttagatgca aaaatgtcga ttgacagcaa tgctctctac cgccacccag aacttaaaga
     6241 gttgcaagac ccatcgcaag atgacgaacg tgaagctgaa gcggaaaaat ggaatctcaa
     6301 ctacgttgca ctagatggca atatcggctg tatggtaaac ggtgcggggc tggcaatggg
     6361 gacgatggat atcgtcaaac tttatggtgg taaaccggct aacttcttag acgttggcgg
     6421 tggtgcaacc aaagagcgtg tagcagcagc ttttaaattg attttatctg atccgaatgt
     6481 gaaagccgtg ttagtcaata tttttggtgg tatcgtccgc tgcgatttga ttgctgatgg
     6541 cgtcattgct gctgtaaacg aagtcggcgt gaatgtgcct gttattgtgc gtttagaagg
     6601 cactaatgcc gcacaggggc gtgagatttt agccaatagc gggctgagta ttctagcggc
     6661 atcatcatta aaacaagcgg ctgaattagc ggtaaaatct gcaaattagg aggaaaaatg
     6721 tcgattttaa ttgataaaaa cacaaaagta atttgccaag gtttcaccgg cggacaaggt
     6781 actttccaca gcgaacaagc ccttgcttat ggcacacaat tagtcggcgg agtttcgccg
     6841 aataaaggtg gcacaaccca tttaggctta ccggttttca acaccgtacg cgaagcggta
     6901 gaagcaaccg gtgcaactgc aaccgttatc tacgttccgg ctcccggctg taaagatgct
     6961 attttagaag ccattgatgc cggcatccaa ctaattgtct gtattactga aggcattcca
     7021 accttggata tgctacaagt taaacaacgt ctaaaccaaa ccggcgtgcg aatgatcggt
     7081 ccgaactgcc cgggtgtgat tacccctgat gagtgcaaaa tcggcattat gccgggcaat
     7141 atccacaaaa aaggcaatat cggtattgtt tctcgttcgg gtactttaac ctatgaagca
     7201 gttaaacaaa caactgacga aggctttggt caatctactt gtgtcggtat cggtggtgat
     7261 ccgattccgg gatctaactt tattgacatt ttaaaactgt tccaagacga tcctgaaact
     7321 gaagcaattg tgatgattgg tgaaatcggc ggctctgccg aagaagaagc ggcagctttc
     7381 atcaaagaaa atgtcaccaa gcctgtagtc agctatattg ccggtgtcac cgcaccaaaa
     7441 ggcaaacgaa tgggacacgc cggtgcgatt atcagcggcg gcaaaggaac cgccgatgaa
     7501 aaattcaaaa tccttgaaga tgccggtgtg acaaccgtca gaagtttagc cgaaatcggt
     7561 tcagctctta gaaaaatttt aggctaaact aaaagttcaa gcagtcatat ttacccattt
     7621 ttttgtaaat atgaccgctt gtttttttgc tattaaatta ctctttcgat ttccaaatta
     7681 atgggtcaac acctttatgg ataaggtctt gatgttcttc aattctaaac actggctctt
     7741 tgccactttt cacttggcga agatagtctt ttaaaataat ccagacaatc ggagcaagaa
     7801 ttaagatagc caccaagtta attaccgcca ttgatgccat cactgtatcg gcaaatgccc
     7861 atacaatccc tccgtctctt actgcaccga agtacacaaa gaataaaacg atggcacgga
     7921 atccccacac aaaccacgga ctgtttttaa tgtagcggat attagtttct gcataagcat
     7981 agttaccgat aatggatgtg aagcaaaaca gtaaaatcac aaatgctaaa aagtgtaaac
     8041 caaattcacc taaatggaat tgtaacgcac tttgagtaag tgaaatacct cttaaagttt
     8101 caccaccata gttatttgac ataagaatga tcactgcagt acaagtacag actacaattg
     8161 tatctacaaa tacgcccaac atttgaatta agccttgact tgccgggtgt ttcgcatcag
     8221 aagtcgctgc agaatttggt gcagatccca taccagcttc gtttgagaat aagccacgtt
     8281 taatccccat tagcatagtt ttggatacca atgctccaaa cgttccacct gcagcagcag
     8341 aaaaatcaaa ggcgctttca ataattaaag agattatact tggcactttt tcaatattca
     8401 tacctaaaat aattactgca ataatcaagt agaataatgc catcattgga acaacttggg
     8461 cagaaacttt accaatacgc ttgacccctc cagaaataat taaccctgta atcaccacta
     8521 atgtcatgcc tacgtagact gggttccaat cccacgcatt tttggttgct tccacaatag
     8581 agttagattg cacagcatta aaagcaaaac caaaggtgaa gataagcgtc actgcaaaag
     8641 caatagcaag agaaggcagt tttaaaccac gagtgatgta ataggctggc ccaccacgaa
     8701 acattccgtt tggatctttg gttttataca actgagccag tgaagactca gcaaaggcgg
     8761 aactcattcc cattaaggcg gtaatccaca tccagaatac cgcacccggc ccacccaaag
     8821 cgattgcagt agctacccca ccaatattac caaccccaac acggctggct aatccagtag
     8881 taaaggcttg gaacggagtt aatgatttcc cttccgtaga acgtcctccc cacatttcac
     8941 gtaaactttg cggaagaaga cgcagctgga caaaacctgt tgtaagagtg aaaaataacc
     9001 ctgcaccgag caataggata atcgttacat cccaaagtgg accgtcgatt gtgttcacaa
     9061 tccaagtcag tacactctca aaaaatagaa taattgaatc cataaagacc tcttaattga
     9121 aaataaaact tccacattgt aaccgattta atatttttaa aaagtttttt taatactttt
     9181 aataaaaatt tttaataact tattaattta gcgtttgaaa aaaacgcctg taccagcatc
     9241 aatgaaacta ctgtgaaata ataccattcc aaatagaatt aatgcgagtc caagtgtaaa
     9301 ttttaatatc caaacgatat ttcgattaat ttgagctgaa aaataccatt ggctaacctt
     9361 aactgcctta tttctcgcaa tgataacaag ataagcaaat aagcttaaag tcagccctgt
     9421 tcctactgcc atagctaatg ctgaaataac cccccaagca tagagattga gcgtataaga
     9481 aagaaataaa acaagaatag cgccagagca aggtcttgag ccaatactta ataccaacat
     9541 cagctgtgct ttccaatctc tcacttgttg catttcattt gaagtcggta aatgtttatg
     9601 cctacagcta caattttcgg tatgaatatg ccctttctgc gtgacaagcg gtaattttcc
     9661 agcttttttt tgcgaaatac gaatggattt aatgataggc tttcgcgctc tgttcaccgt
     9721 tcgatacacc tggtaacacc agtaaatgcc gaacaagatc atcaaaccaa agctcccccg
     9781 ctcaacccat tttagggtta aattaaaata ttggcgagag agagtaaaaa tcaccacaat
     9841 caccgtcacc aatgaaattg ccactaagcc ctgcaccaat gctgaggcaa aagtgatttt
     9901 catcgcctga tttaattttg ttttttcaaa agaaagataa ctgctcagaa taaattttcc
     9961 gtgaccaggc ccaactgcgt gaaatactcc atataaaaaa ctaataaata ctaaggtaat
    10021 accggcttta ctttgatttt cagctaattc attgagcgaa gcggaaagct gtaaattaaa
    10081 gtttttttgc cattccatca ctttaaacaa tatcattgga taaagctgat aaagagcaaa
    10141 taggctcaaa aatcctatca ctatcattcc ccaatatgtt gcttttaatc gcatataatc
    10201 tccacttttt gagcaaattg ggcaccaaga gagtaatctc cattttcagg catatccagt
    10261 gattggtttt tatccaaacc ggaagcatat aagcgtaact tactatctac ttgaggttgc
    10321 accaatgttg ctttacaact tgcattactg gtattgacat cagcagggcg attatattcc
    10381 atcgcaatat aataactcgg ttcataagta tagaatctca ctttactctg ctttaattcg
    10441 tgaggtttag ctaaatgaaa agtaatataa aaaatcactc tgttattctt gatttcaaag
    10501 cgagtcgctg tgggctttgt cgtaaatttt atcggctgat tttgactatc atataaggtg
    10561 ctaaaataat gattttgcaa tgcggtttgc accatttctg cagtgatatt ctgctgagtt
    10621 ttttctttat cttggctatt tttcacttca taaattaact cagaagaagc aatttcatct
    10681 agcatccatt ccatttggaa agatttcaac attgagcctt ccacaataac attcgttttc
    10741 aaatcaacaa atgaatgtgg gtgagaaaaa actggcattg aatataatgc aattaacgtg
    10801 ataatcgtct taataaattt catatttact ttcactataa aataaaaaag cgaacaagtt
    10861 ccccctgttc gcatttcaag aatttagtga gttggtcgat aagccgagtt ctgtcgtgga
    10921 caatcattcc tctagacgta catttacaca tacgctcaag caacctaccc gaactctcag
    10981 cgggccaccg attgagttcc tatttggtct tgctacgagt ggagtttacc ctgctgtgga
    11041 atgttaccac ccacacggtg cgctcttacc gcaccctttc acccttaccg acaaagccgg
    11101 cggtctgctc tctgttgcac tggtcgtagg ctcacgcccc ccggacgtta tccggcactc
    11161 tgccctgtgt agctcggact ttcctctcgt ttacttgtcc cccagtttac gttttcacga
    11221 atttagaggc ttcaataaac cagcgattgc ctaaccaact cagcactaga gtataatgct
    11281 ttcgcaaaaa attgcaagga aataaccgct tgtagttatt atggcaaaat aaaaaaggat
    11341 taagttcatt taaaaactta atcctcttcg ctttaattca ctcgtaaaaa ttacgcacgt
    11401 ttgaagtcta agtgaactaa ttttggttta gttgggtggc gttgaattgc ttgtactttt
    11461 acttgctctt ctttacctgc aacaacgata gttaatactt cgttatagaa tgaatcgtga
    11521 acttgtgcgt tgttcacttt atcgtgatct aaaatgattg atacaggctc tgcattacca
    11581 ccgtagatga ttgcaggaac ttgaccattg tgacgcaggc ggcggctcgc acccttacct
    11641 tgcgcagaac gaacttcagc ttcaaatttg aatgacatag ttttattctc ttaaataaaa
    11701 tggggaaatc cccgtgaata gaaaaaacag caggcgaccc agctgtttcc gaaaaaatat
    11761 cggcatatcc gtctcgatat gccaactacg tattttactg aagttgcaga aaaatgcaat
    11821 gtaaaaatat taagcaacca gttttttcaa ctgctctgca taagcttccc aatctgtaat
    11881 tggtcgagtt gctacacctg attgaattgc tgcttttgct acaccaatcg agacattcac
    11941 gatcaaacgt ggatcaaatg gcgttggaat aatatattcc gggccaaacg ataattcgcc
    12001 ataagttgaa ataacttcaa acggcacagg ttctttagcc aactctgcaa tcgcatgggc
    12061 tgctgccatt ttcatttctt cattaatggt ttttgcccca acatctaatg ctccacggaa
    12121 taagaacggg aaacaaagca cattattcac ttggttttta aagtctgaac gaccggtaca
    12181 tacaatcgca tctggacgga cagccttcgc ttcagcaggt gtaatttccg gcacagggtt
    12241 cgctaaagca agaattaata gatcttttgc cattgtttta accatttctt gcgttaaagc
    12301 tccgcctttt gaacaaccta agaaaacatc tgcattcgca acggcatctg ccaatgttct
    12361 ccaaccatta tcttctattg catagaattg tttggtttca tccatcttat caccacgacc
    12421 ttggaaaata acgcccttag aatcgcacat tgtgatattt tcttttttca cacctaatga
    12481 acggagtaag ttagtacacg caatcgctga tgctccagca ccgtttacca ctaaacgtac
    12541 ttctgaaatt gctttaccta ccacttgtaa tccgttaatc accgccgcac cggtaataat
    12601 tgccgtaccg tgttgatcat cgtggaacac agggattccc atacgttcac gtaatttttg
    12661 ctctacataa aaacattcag gtgctttaat atcttccaga ttaataccac caaaagtcgg
    12721 ttctaacgat gcaataatct ccactaattt ctccggatca gtttcattaa tttcaatatc
    12781 aaacacatca attccggcaa atttcttaaa tagaacacct ttgccttcca tcacaggctt
    12841 acttgctaaa gcaccaatat tgcctaagcc taacactgct gtaccattag aaattactgc
    12901 aactaagtta cctcgtgccg tataacgata agaagctgaa ggatcttttt caatcgctaa
    12961 gcaaggctca gcaaccccag gagagtacgc taaagctaaa tcgtgctgag tatctaatgc
    13021 tttagtagga gtaacggaaa tttttccggg gattgggaac tcgtgaaaat caagcgcctg
    13081 ttgttttaaa tcgctcattt tagaaacctt ataatctata aaaataaaag taatcaataa
    13141 tagccaaaga gtagccattt taccctaaat tttttcgcat ttttatggct ttgctctcat
    13201 tttttatgat atttacaaaa aataatacaa aaacgtccgc ttgttttact caaatcaagc
    13261 attcttcatc ttattgataa aataagaaac catttcagaa gctatatcaa catcatttac
    13321 tctctctatg ccttcaaatc ctgggctggc attgacttct aaaataacta cgcctttctc
    13381 tgtccgcaga aaatcaacgc ctgcaatatc aagccctatc gttttagttg ctttaattgc
    13441 taacgcacgt tccatctgag ttaattcaat cggttgagcc gttccacctt gatgaatatt
    13501 ggctctaaaa tcgcctgtta cgctggttcg gctcatggca gcaaccactt cattgccaat
    13561 cacaaacgcc cgaatatctt gccctttagc gtcgcccaca aattgttggc atagataagg
    13621 ctcatttact tgcctaaagg tcgctaacac ggcctcggca ttatttttgc cttcaaatag
    13681 cattacgcca ttcccctgtg aaccatttag cacttttgaa ataagtggaa aagcaaattg
    13741 attgagttgt gatttcacag aaaccaaatg ccctgcaaaa ttcgtattag gaaccggcaa
    13801 attgtgtttg gctaattttt gtaatgttcg ccatttgtct cgggctaacg caaatgccgc
    13861 tgaatgattt agaacaggaa tacctttcgc ctcaaaatgg cgtaacaccg aacagcccat
    13921 ttcggtactg cctgtgccaa aacggggtaa aatgccgtca taattcggca acaataccgg
    13981 ctccggacgg ttgttatcat agctctcgcc agcttgatag tagatcttaa attcgccatt
    14041 ttctaacccg agtagcattc tattctggtc taaaatatcc agctcaatcc cctttgcctc
    14101 acaagcggct tttattcgac agcagctata taaacgaggc tctcgacata gcattagcca
    14161 cttcattttt tcagcaatcc tttctgattg aaaaacggca aaatatgcgg acgaacaggc
    14221 ttatccaatg ttttatgaat agctgcttgc cattgttgtg gctcgccgat tctggcttgg
    14281 tagtaagcgg tcaaattttc attatatttt gcaaattcag tccaatcaaa atcctgatat
    14341 tgattgttat aacaaaccaa actattcggc aaacgaggtt ttattgccgg ctcttgtgcc
    14401 ggatacccca aacacatacc caccagtgga acacaatatt ccggcaagtt aagggcttta
    14461 gaaacccgct caatatcatt acgcaatgct ccaatataca ccgctcccag ccctagtgat
    14521 tcggcggcta aaaatacatt ctgggccaaa ataccggtat ctaccgcccc aatcaacgac
    14581 acctccgccc attccaactg cgattcaggg acaagttgtt tgtgtttatt aaaatcaatg
    14641 cagaacacca aaaattcagc acaatctact acatattgca tacctgaaac ggcttttaat
    14701 gtttctcgaa tctgccgatc ggttacacga atcaccgtca cacattgcag atgatttgaa
    14761 cttgaagccg ctttacctgc ctcaattaag atttggaaaa tctcttcaga aataggctgt
    14821 tcggtaaatt tacgaataga acggtgagat aaaatcgtct caagagtcgg tttactttgc
    14881 atatttttct cgtctaaagt ttatctaaat aatttttgcc atcaagcaaa cttacttgtc
    14941 gcataatcca cgcttggcgt ttttgcatac tcgggccggg tttatctacc ctaaacacca
    15001 acgggttagg caaagaggct gccaatagtg cggattcttg caaggttagc tgtttggctg
    15061 attttttgaa aaaatgcttt gcggctgctt ccaccccgaa aatgccgtta ccaaattccg
    15121 caatattgag gtacacctct aaaatccgat ccttactcca cacattttcg actaacaggg
    15181 ttaaaggcac ttcaatccct ttgcgtaacc agctttgccc gtgccacaaa aacatatttt
    15241 ttaccgtttg ttgcgaaatg gttgaacctc cacgcacttt tttggattta gcattcagtt
    15301 tcaaggcagt ttctatcgct tgtaagtcaa tgccaaaatg gctttcaaac ttttgatctt
    15361 ctgaggcaat cacagccatt tgcatttgcc acgaaatctc attcaggctc acccattctt
    15421 ttttgatcgg gtaagatttc ccctgaacca gattctccac ctttttttgc accatatacg
    15481 cagaataagg caccggtaac accgaaaaaa tcagtatcgg aatcaggaaa aatgtgccac
    15541 caaaggttaa taagcgacta gaaccaaacc aaagccagcc cagtttactt tttattttgc
    15601 gaggaataaa aaaaagccct attttcttca aaagagagct taaaaatcgc ttgttacgct
    15661 ttgccattga ctgttccatt aaccttgccg ttcagccatt gcagaaaatc ttggtcgagt
    15721 gttttaagca tatttgaacc acgagtgatg gttgccgcac tggtatttaa attttgttgg
    15781 atttcccgtt gcgaatcttc accttttagc aaagcttgca caatttgtaa acgcaagcct
    15841 aatgaacctc gctcatcggc ggtgagaaac attgagaaaa acggctcaag tttatcttcc
    15901 gcaaccgctt gttcaagcag agccaaaaac tgcgtccact cgtttggatc tcgctggtta
    15961 tagagtgttt tcatactgtc ccttgaagta aaaacggtga caagcggtca gatttttaca
    16021 aaattttgca gaaaaacgac cgcttgctct ccattatttt ttcgattttt taccgccacg
    16081 ttggtcgtct aactctgccc ctttcggtac gctgaattta aacaaatcgc ttgagacacc
    16141 gccggtagta atattgcgta acacatataa gttactttgc ccgtcacgct caatggtact
    16201 gaaacctttt aataaaccgc tttggtcaat ccgcacatca aactgtttta aattgctttt
    16261 tttcgatttt ggcttaagca cgaaagtatc agcactctgg ctgacatcat attgatccca
    16321 gtggctttta tcaccgctgg ttaataagac gaatggcgta ttattaactg catcttgcac
    16381 ggtatttacc gtaacttgtg aaacgaaagg atcgtaaaac cataaatctt tgccgtcaga
    16441 tacaatcaaa ttttcttgtg gtgatttggt atccattcta aataagttcg ggcgttttac
    16501 ttggaatttg cctttgcctt gctgaatttg tttacctttg ctagaacgca cggtttggtc
    16561 gaaatccgca ctatattggc ttacttgttc caaacggcgt tgtaattctg caacagattg
    16621 agcatcagcc aatgccacat ttgccaagcc aaataacgct aaaccgaata ccgatttttt
    16681 aaataatgtt ttcatttgtt ttccttttta ccaacaagaa ttttcttgtt tgacaataaa
    16741 atcatcaaaa gtttcatatt aatgaactgt tacaacaata caataaaagt cgtgaattgt
    16801 atagtttaat gagcttcgtc ccagttttcg cctacgccaa cttcggcaat cagtggcact
    16861 ttgaggctaa tcgctttttc catttcggtt ttgattaatt ggctgtaatg gtcgatttta
    16921 tcggctttga cttcaaacac caattcatcg tgaacctgca taatcatttt gatttcatca
    16981 ttatcacgaa tcgcattatc aataccaatc atcgccacct taataatatc ggcagccgtg
    17041 ccttgcattg gggcgttgat tgccacccgt tctgctgctt tacgcaaaat agcattgccg
    17101 gatttaatat caggcaagta caaacggcga ccaaataggg tttcaacata gcctttttca
    17161 actgcaactt cacgaatatc ggtcataaat tgttgaaccg ccgggtaacg ttggaagtag
    17221 agatccatat atttttgagc ctctgcacgc ccaatcccta attggtttga aagcccaaat
    17281 gacgacattc cgtaaatcag cccgaagtta attgctttcg cactgcggcg ttgttcggag
    17341 gtgacttcac ctaactccac cccgaaaatt tcggcagcgg tagcacggtg aatatctttg
    17401 ccctccgcaa aggcgttaat cattccctca tcattcgata aatgagccat aatccgtagc
    17461 tcaatttgtg aatagtcggc agcgacaatt ttataacctt ctctcgcgac aaaagcttgg
    17521 cgaatccgtc tgccctcttc attgcggatc ggaatgttct gcaaattcgg atcgctggaa
    17581 gaaaggcgtc cggttgcggt gactgcttga ttgtaagagg tatgcacccg ccctgttttt
    17641 ttgttaatca gttgtggtaa tttatcggtg taggtagatt tcaacttact taacccacga
    17701 tgctccatta ataacttcgg cactaaatgc ccttgttgag ccaactcgtc taacacttct
    17761 tcgttggttg agggtgcacc ttttggagtt ttcttcaaca ccggcaagcc taatttttca
    17821 aacaaaatct cttgtaattg tttagttgag gcaagattga aggtttgccc tgcttctgcg
    17881 tgtactaatg tttcaacttc ctccaaacgt ttttcaattt cagccgattg ggtcaataat
    17941 tttttcgggt caatcaacac gccattgcgt tcaattcgag aaagtacgcc cacaagtggc
    18001 atttcaattt catcgaataa cttcaccaat tcaggctctt gctgtagttt ttcccacaat
    18061 acttggtgga gtttcatcgt cacatcggca tcttctgccg catattcagc cgcttttgct
    18121 atctcgattt tatcgaaggt cagttgattt ttccccttac cagcaagctc ttcaaacgga
    18181 atcgttttat gccccaaata acgggcggct aaatcgtcca tattatgacg accggtgctg
    18241 ttttgggtgt aagattcaat catcgtatca aaagcaacac cttgtagctc aatgccgtag
    18301 ttcgcaaaaa tggttaaatc atatttaata ttctgcccga tctttttaat ctccgggtta
    18361 agcaaaatcg gcttgagttt acttaaacaa gcggtcaaat ttagctgatt ttttaccaat
    18421 tcatcggaag acgggctttc tgaacgctcc tcatcaccga acatatcggc ttgttgcggt
    18481 tgggcttttt gcttatgccc aagcggaata tagcacgcct cgccattttc cagtgcaaag
    18541 gaaataccga ccaaattagc cgacattgcg tcaaggctgt cggtttcggt atccaccgca
    18601 atcaaacgag ctgcggtgag tttttcgatc caggctgata atttctgttc agtatcaacg
    18661 gtctcatatt tgctacgatc gatctcgacc acatttgcaa cattttcctc atttctgacc
    18721 gcttgtgtta cttggtaatt attcggtact ttttcagccg aagtttgagt gaccggattg
    18781 gcattttgat tcacttcgtt cagccagcgt ttaaattcat aatgctcaaa taattgagca
    18841 agctcagcac ggtcttgcgg ctgtgttaaa agttgatcgt gagtaacatc aagttccaca
    18901 tcggttttga tggtagcaag caaataggat aaatcggcat tcgctttttc cgcttccaat
    18961 tttggggcga aattttttgc cccacggaaa gaaagggtgg caatttgatc caaattagca
    19021 taaatctgtt caagtgaacc aatgccttgc aataaagcta atgcggtctt ttcccccaca
    19081 ccttttacgc ccggaatgtt atcggcggaa tcgcccatta atgccagaaa gtcgataatc
    19141 aactcaggcg gaatgccata tttttcaatc acgccttcac gatctaacaa agtattgttc
    19201 atcgtgttaa tcaacataat gtgatcgttc accaattgtg ccatatcttt atcgccggtg
    19261 ctgatcaaca catctttgcc gtctttagcg gcttgcacag caagcgtgcc gatcacatca
    19321 tcagcttcca caccttcaat cgaaatcagt ggaatgccta aggctttgat aatgcgatgc
    19381 aaaggctcaa tttgagggcg taaatcatcg ggcattggtg ggcggtgcga tttatattgc
    19441 ttaaacaact catcacggaa ggttttccct ttggcatcaa acaccacagc aatatggctt
    19501 ggattcactt gtgaaatcag gctttttaac atattcagca cgccatacat tgcccctgtc
    19561 ggttcgccta agcgattagt gagcggaggg aaagcgtgaa atgctcgata taaataggaa
    19621 gaaccatcca ccaataccag tggatttttt gcgatagttg ccataaaaat ctctttataa
    19681 tcaaataaat attggcgtta ttatacaaga atatttaaga attgagtgtg tataaggctt
    19741 att
//
LOCUS       DANLZD010000034        19544 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.034, whole genome shotgun sequence.
ACCESSION   DANLZD010000034 DANLZD010000000
VERSION     DANLZD010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19544)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19544)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19544
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.034"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            109..2718
                     /gene="adhE"
                     /locus_tag="PXE26_000901"
                     /gene_synonym="adhC"
     CDS             109..2718
                     /gene="adhE"
                     /locus_tag="PXE26_000901"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HDL5593504.1"
                     /translation="MAKNTQPFDAQAEVNELVEKGLKALDEFRKLNQEQVDFIVAKAS
                     VAALDKHGILAMHAYEETGRGVFEDKATKNLFACEYVVNNMRHLKTAGVISEDDVTGI
                     TEIADPVGVVCGITPTTNPTSTTIFKALIALKTRNPIVFAFHPSAQQSSAHAAQIVRD
                     AAVAAGAPENCIQWITQPSMEGTSALMKHPGIATILATGGNAMVEAAYSCGKPALGVG
                     AGNVPAYVEKTAKLKQAVYDIVMSKSFDNGMICASEQAAIVDKEIYAEFIKEMQSYGV
                     YLVNKKEKALLEKYIFGIDKAKDENCSGAKLNSAVVGKPAAWIAEQAGFKVPEKTNIL
                     LAECAFVGEAEPLTREKLSPVLALLKSDSTEHGLELSEAMVNFHGLGHSAAIHTENKA
                     LAKTFGERVKAIRVIWNSPSTFGGIGDVYNSFLPSLTLGCGSYGKNSVGNNVSAVNLI
                     NIKRVGRRRNNMQWFKVPSKIYFERDSIQYLKSMHDVHKVMIVTDRSMVDLGFVDRIT
                     EQLRQRRNQVMIQFFTDVEPNPSLQTVQRGTELMRSFQPDTIIALGGGSPMDAAKIMW
                     LFYEQPEVDFRDLVQKFMDIRKRAFKFPQLGRKAKFVGIPTTSGTGSEVTPFAVITDG
                     DIKYPLADYSLTPTIAIVDPALVMSVPSHVAADTGLDVLTHATEAYTSILANDYTDGL
                     ALQAIKLVFENLEKSVKEFDETAREKMHNASTMAGMAFANAFLGICHSMAHKIGGKFH
                     TIHGRTNAILLPHVIRYNGTRPTKVATWPKYTNYVADVRFQDIARMLGLPAETPEQAV
                     EAYAQAVHDLAVRCGVKMSLREQGVDEQAFLNARRELALHAFEDQCTPANPRLAMIED
                     MEAIMTKAYYGKE"
     gene            2865..3761
                     /locus_tag="PXE26_000902"
     CDS             2865..3761
                     /locus_tag="PXE26_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HDL5593505.1"
                     /translation="MQITILDGGISRELMRRNAPFHQPEWSAAALYEGPHFVQAVHED
                     FIAHGAEVITTDSYAVVPFHIGEKRFAADGKMLADLAGRLAKQAVKNSGNIATQIAGS
                     LPPMFGSYRADLIQMERFAEVAQPLIDGLSPYVDIWLCETQSAIIEPISIKALLPKDN
                     RPLWVSFTLTDDEPTTEPQLRSGESVKQAVEEMVKLGVQAILFNCCQPEVIGEALSVT
                     QKTLAELKATHIRTGAYANAFAPQPKDATANDGLDEVRQDLTLEAYLGWAKKWTEQGA
                     TIIGGCCGIGVEYIETLAKNLK"
     gene            3771..5180
                     /locus_tag="PXE26_000903"
     CDS             3771..5180
                     /locus_tag="PXE26_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDL5593506.1"
                     /translation="MSNKKIGLISLTALVLSSMIGSGIFSLPQNMAAVAGAEAITIGW
                     LITGVGIIFLGLSFFFISRLRPDLDGGIYTYAREGFGELMGFMSAWGYWLCATIGIVG
                     YLTVAFEGLGVFTDNPNTVIFGQGNTLASFIGSSIIVWLVHALIAGGIKEAAFVNLIA
                     TFVKVAPLILFIGLGIWYFDVDLFNSDVKATALNNSVSDQVKSTMLITLWVFTGVEGA
                     SVLSAHAKKRSDVGLATVLGIIIALALYVAITILSLGILPRETIANMANPSMGPLLDA
                     MMGPTGKVIITACLIVSVLASYISWTMYSAEVPYRGSKNGAFPKILDKVNKNGTPINS
                     LWFTGFIVQFCLVLVFVFEQSYNTLLLISTSMILIPYFLIGAYLFKLAIQTNATWYIK
                     LTGFMAALYGLWIVYAAGLEYLLLSVVLYVPGILLFLYSNYKFNGRLTLSTAEKVILI
                     VLLVIFGYAVIELPALLAA"
     gene            5287..6510
                     /locus_tag="PXE26_000904"
     CDS             5287..6510
                     /locus_tag="PXE26_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF711 family protein"
                     /protein_id="HDL5593507.1"
                     /translation="MQTYQHKALCRVRTITLFLSLTKDKLQWETALNAAKAEFDLLVP
                     AIQTQGYHIQSIRIVTNSFGEYLDLTNIETAKQDLAYLKQLLTQLNDSGLRIRFAIGE
                     AKTPHELALLPELILNYGDLSNACVNIEPDEFGILDNETILQSAQIIKQIAEITPRGE
                     GNFNFTVNFNCKPFIPYFPASYHSSKLPNSFVIGLETPDLLVAVLKELKASPHNDFYR
                     QCYETMSQALQYHVDEVLEAVKSVQHKLQFAFAGIDSSAAPSKNCASMTEVYELMGVP
                     FFGAAGTVEASSLLTKVFKSIKHVPLVGFSGLMLAVTEDLGLAAGTHKAQFDIRALLT
                     YSAVCGIGLDTVPISNEATVEQIAALMRDTGTMAFRLNKPLTVRLFPIPNKSAGEVTE
                     FESDDLCNCRILAVP"
     gene            complement(6548..7744)
                     /locus_tag="PXE26_000905"
     CDS             complement(6548..7744)
                     /locus_tag="PXE26_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDL5593508.1"
                     /translation="MKQVIRFIVFSTLSLFSFSTFAKTIVAIDAGHGGKDPGAIGKNL
                     GILEKSVTLAISKELKALLDADPNFKAVMTRSGDYFIQLPQRTEIARKHRADLLVSIH
                     ADSSPRGDSLKGASVWVLSNSRASDEMGKWLEDHEKQSELLGGAGSVLSSNNERYLNQ
                     TVLDLQFSHSQRAGYELGKSILAKMSNVAALAKSSPQHASLSVLRSPDIPSVLVETGF
                     LSNSTEEAKLASANYRKQVARAIYNGLVAYRAKNAVASSSVSKKSDKEDKQNKKEEKT
                     AKADLTKKPASEKQEKNTQSDKTKLKEKSKKEDKKEDSAKTNKKKEQQLKEKTALEKD
                     QKNQSKKSDSQREIKVSNSGYHIVQQDETVYSIARAYGTTPQKISELNNLKNYQITVG
                     KKLKVK"
     gene            complement(7764..8255)
                     /gene="tsaE"
                     /locus_tag="PXE26_000906"
     CDS             complement(7764..8255)
                     /gene="tsaE"
                     /locus_tag="PXE26_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HDL5593509.1"
                     /translation="MTDSLSFYCEDETKLLEFGQSFALELKKYLLQDQAHSLVVYLNG
                     ELGAGKTTLTRSIVRAFGHQGNVKSPTYTLVEEYQLPPFSLYHFDLYRLADPEELEFM
                     GIRDYFKPQTLCLLEWAVKGKGMIPEADFVIQIDYKNDGRQISLLPQNQTAVDILVNF
                     HQK"
     gene            complement(8255..8809)
                     /gene="orn"
                     /locus_tag="PXE26_000907"
     CDS             complement(8255..8809)
                     /gene="orn"
                     /locus_tag="PXE26_000907"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HDL5593510.1"
                     /translation="MAQNEQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGP
                     VLAVHQTDDLLEKMSDWCVKTHTANGLIERVKASKLTERAAELQTLDFLKRWVPKGAS
                     PICGNSIAQDKRFLYKYMPDLADYFHYRHLDVSTLKELARRWKPEILDKFSKGNTHLA
                     LDDIRESINELKFYREHFIQLDQK"
     gene            complement(8819..9298)
                     /gene="coaD"
                     /locus_tag="PXE26_000908"
     CDS             complement(8819..9298)
                     /gene="coaD"
                     /locus_tag="PXE26_000908"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HDL5593511.1"
                     /translation="MSYNVIYAGTFDPITNGHLDIICKASHLFGKVIVAVAQNPSKQP
                     LFSLEERVELVKQSCTQWQNIEVIGFSGLLADFAKQQNAKALIRGIRGADDIDYEIQL
                     AQLNYKLSGDLETIFFPPSIEWRYLSSTMVREIYRHNGDISQFVPQAVKNALKIAKV"
     gene            complement(9300..10580)
                     /gene="waaA"
                     /locus_tag="PXE26_000909"
     CDS             complement(9300..10580)
                     /gene="waaA"
                     /locus_tag="PXE26_000909"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HDL5593512.1"
                     /translation="MLRLLYICLSYLLQPVVLLLMWYKGRKQPAYRKRLWERYGIYDE
                     SEKPKAKGVVIHAASVGEVIAATLLIKAVSKQYPELPLIVTTVTPTGSGRVQAAFGNS
                     VSHFYLPYDLPDAIERFLNFIDPKLMIVIETELWPNLIRKVNIRKIPFVIANARLSPR
                     SAKRYGWVKGSIKDMLNQISLIMAQDEVSRDRYLALGYAPAKMVNTGNLKFDLEITPQ
                     LHQSVIKTKASLNLTERPIWIAGSTHEGEEKLILDAHKLLLEHYPNLVLILVPRHPER
                     FGLVELLIQKSDLNYVKRTENKTLSQNTQVMLGDTMGEMMLLYGLSDIAFVGGSLVKH
                     GGHNPLEPIAFNIPVVSGLYTYNFPEIFEKLREVKGVIEIESSVEALTESIQLLLKQP
                     QIGQEIAKSGLSVLQENQGALKRHLDLLASYLEK"
     gene            complement(10760..12139)
                     /gene="yegQ"
                     /locus_tag="PXE26_000910"
     CDS             complement(10760..12139)
                     /gene="yegQ"
                     /locus_tag="PXE26_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HDL5593513.1"
                     /translation="MTLKYAKPELLSPAGSLKNMRYAFAYGADAIYAGQPRYSLRVRN
                     NEFNHANLKVAIDEAHALGKKFYVVVNIAPHNSKLKTFIKDLKVVVDMKPDALIMSDP
                     GLIMLVRENFPEMDIHLSVQANAVNWATVKFWRQMGLTRVILSRELSLEEIEEIREQV
                     PDMELEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYKMEEGKIDEVGQI
                     VPKYEPEIEVKNVAPTLGNGEATDKVFLYTESQRPDEQMTAFEDEHGTYFMNSKDLRA
                     VQHVERLTQMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDESLMDTLESL
                     AHRGYTEGFLRRHTHDEYQNYEYGYSISERQQFVGEFTGKRNAEGLAEVAVKNKFLVG
                     DSVEMMTPKGNIVFKIERMLNRKNENVDAALGDGHFVFLDVPADIELDFALLMRNLVN
                     TNTRNPHQA"
     gene            12267..12638
                     /locus_tag="PXE26_000911"
     CDS             12267..12638
                     /locus_tag="PXE26_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593514.1"
                     /translation="MKLKYLLATTLLAFSTFTAAQSIKTEMMQMNMQANKLMRAESAE
                     EFSEIANDFIIITEKTKGIFPNSVEGDKAAQEDYQAGMQKLIDMVNQASEKAQAGELQ
                     EAKMLISELEMIKREYHKKYK"
     gene            complement(12677..16153)
                     /gene="dnaE"
                     /locus_tag="PXE26_000912"
     CDS             complement(12677..16153)
                     /gene="dnaE"
                     /locus_tag="PXE26_000912"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HDL5593515.1"
                     /translation="MSDCRFVHLKVHSDFSMINGLAKVKSLVKTAAANNMVAMGLTDF
                     INFCGLVKFYGEALGAGIKPIIGADVYVRTESGNEDYFELTLLAKNNKGYHNITQILS
                     KAYQQGYVEFPMVEREWLAELNEGIIILSGGRMGDVGKALLKENRQEAEEKLAFYQQY
                     YPNHFYLSVCRTGRADEERYIKQAVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAI
                     HDSYTLDDPKRPKKYSPKQYFRTEEEMCKLFADLPSALANTVEIAKRCSVTVRLGEYF
                     LPNFPTGELSTEDFLVKKSKEGLEERLEFLFPDPEERANKRSVYDERLQVELDVINQM
                     GFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLN
                     PERVSMPDFDVDFCMDGRDRVIEHVAETYGRQAVSQIITFGTMAAKAVIRDVGRVLGH
                     PYSFVDRISKLIPPDPGMTLEKAFAAEPKLPELYEADEEVKDLIDMARKLEGVTRNAG
                     KHAGGVVIAPTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKW
                     ALEMINERLAREGKEPIRIETIPLDDKKSFALLLAAKTTAVFQLESRGMKDLISRLKP
                     DCFEDIIALVALFRPGPLESGMVQNFIDRKHGKEEVSYPDPQYQHECLKPILEPTYGV
                     IVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMAAQREVFEKGAEAKGIDGKLA
                     GQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVG
                     FYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAIKGVGEGPIEAILAARQKEG
                     KFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALMKNLEDALKASDQHAKM
                     EELGQSDMFGVLTETPEEVQNAYANTPKWSEQVILDGERATLGLYLSGHPIGRFLKEL
                     SHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIGIATIEDRSGKLDITLFS
                     EALENFGHLMQQDQIIVATGSVQFDDFSGGLKMSAREVLSLDEARGRFAKSLALAISK
                     EQLSADFIKKMTAIITPHKEGTLPLHFYYQSPEGRVLLKGGVEWRISPNEAMFSELKA
                     LLGENSVELEFE"
     gene            complement(16378..17475)
                     /gene="lptG"
                     /locus_tag="PXE26_000913"
     CDS             complement(16378..17475)
                     /gene="lptG"
                     /locus_tag="PXE26_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HDL5593516.1"
                     /translation="MQFFSMNILERYIGKTILSAIFLTLFMLIGLGAIIKFVEEFRDV
                     GRGSYDGLKAAYYTFLTIPRDIETFFPIAALLGSLLGLGNLASLSELVVMQASGFSRF
                     RIGLAVMKTALPLVIFTMIIGEWGVPQTEQFARNMRSIAQSGGSMLATKDGFWAKDGN
                     SFIYINHIKNEKSLDNVLIYQFGEGQNKRELQSVLKARTANYSDEKGWVLSKVEKSTV
                     GENQIQQAKQPDQVWQTSLTPSKLGIVSLKPESLSISGLADYVGFLKDTGQDPKRFEI
                     TFWRKVFQPISMAVMMLLAISFIFGPLRSSTMGAKIVIGIVAGFMFYVANIVFGNLSL
                     IATWLPIPVGALIPSLLCLIIVWWLLSKKRD"
     gene            complement(17475..18584)
                     /gene="lptF"
                     /locus_tag="PXE26_000914"
     CDS             complement(17475..18584)
                     /gene="lptF"
                     /locus_tag="PXE26_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HDL5593517.1"
                     /translation="MILSRYLTKEIFKSQLAILFILLLIFFCQQLVRVLSSAVSGKVP
                     ADLVVSLLGLGMPTMAQLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLVKVA
                     MFLSIFTTALAVYNVFWLTPWAINKQSEMLAEAKANPRFAALSAGQFMSAGGYVLFID
                     KIENNSLNDIYVFQPEQQKKNKPSVVVAESGTLQGLPNGDQVLTLAESKRFEGTPQSA
                     DFRISHFENYSAYLGYQDVESDEKLVQRADFKKLMETKTPEAKAELHWRLALILAVPL
                     MALLAVPMSSVNPRQGRFAKLLPALLLYLIYFLLQSSLKSSGASGKLNAEVLMPLVSV
                     AFLVLGVILNAWDSKFMSKLRYQFGAKKLTNKAVA"
     gene            complement(18758..>19544)
                     /locus_tag="PXE26_000915"
     CDS             complement(18758..>19544)
                     /locus_tag="PXE26_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593518.1"
                     /translation="GKTFVVGLIGLGTQNTIFANDDAQISRYEQAKLRLSYDGNVGNL
                     LQQLSQRLKVGFIAYDVDITRKISLQNETETAIKTINEQIESQLTNIDVRFEKIGERL
                     FLVVSAKDVAPLLQNEPKEVQFVGDVIFDGEPNLTEQAQSTAEATKVQNILNIATNQE
                     KIMAAKGKKAPQYKTVTKDNIGLKNIRVTALGTFLVFDTSVDAAKLRVKGNFEDIAQG
                     ENIIAILHQNTEAPPKIEIEDSQGKKLILEAHKATSSKKSKKQ"
BASE COUNT         5591 a         4440 c         3800 g         5713 t
ORIGIN      
        1 aagcaaacat aaaacattat taatttttaa cgacaaaata actcttttgg gtaataattt
       61 catcagttaa aaaaattatc aaatttaaat tttatgagga accaaactat ggctaaaaat
      121 acgcaaccat ttgatgccca agcagaagtg aatgagcttg ttgaaaaagg cttaaaagcc
      181 cttgatgagt ttagaaaact caaccaagaa caagtggatt ttattgtcgc taaagcctct
      241 gttgctgccc ttgataaaca cggtatttta gcaatgcacg cttacgaaga aaccggacgg
      301 ggtgtgtttg aagacaaagc cactaaaaac ctgttcgcct gtgagtatgt tgtcaataat
      361 atgcgacatt tgaaaaccgc aggggtcatt agtgaagatg atgtcaccgg tattaccgaa
      421 attgccgacc ctgtcggtgt tgtctgcggt atcaccccaa ccaccaaccc aacctcaacc
      481 accattttca aagcgttaat cgcccttaaa acccgtaacc ctatcgtttt tgctttccac
      541 ccgtctgctc aacaatcttc tgcccacgct gctcaaattg tgcgtgatgc tgccgtggct
      601 gccggtgcac cggaaaactg tattcaatgg attacccagc cttcaatgga aggtacatct
      661 gctttaatga aacacccggg cattgcaact attttagcca ccggcggtaa tgcaatggtt
      721 gaagccgctt actcttgcgg caaaccggca ttaggagttg gtgcaggcaa cgtaccggct
      781 tatgtagaaa aaaccgctaa attaaaacaa gcggtgtatg acattgtaat gtcaaaatct
      841 ttcgacaacg gtatgatttg tgcctctgaa caagcggcga ttgtagataa agaaatttac
      901 gctgagttta ttaaagagat gcaatcttac ggcgtctatt tagtgaacaa aaaagagaaa
      961 gccttattgg aaaaatacat tttcggtatt gataaagcca aagatgaaaa ctgctcaggt
     1021 gcaaaactca attcagcggt ggttggcaaa ccggctgcgt ggattgcaga acaagccggc
     1081 tttaaagtac cggaaaaaac caatattctg ttagccgaat gtgcctttgt gggcgaagct
     1141 gagccactta cccgtgaaaa actttcgcct gtactggctc tgttaaaatc cgactccacc
     1201 gaacacggtt tggaattgtc tgaagcgatg gtgaatttcc acggtttagg gcatagtgcc
     1261 gccattcata ccgaaaacaa agccttagcc aaaacctttg gcgaacgggt aaaagccatt
     1321 cgggtgattt ggaactcacc atcaaccttt ggcggtatcg gtgatgtata taactccttc
     1381 ctgccatcgc ttacgctggg ctgtggttcc tacggtaaaa actctgtagg taacaacgtt
     1441 agtgcggtga atttaatcaa tatcaaacgt gtgggcagac ggagaaataa tatgcaatgg
     1501 tttaaagtgc catcaaaaat ctactttgag cgtgactcaa ttcaatattt gaaatcaatg
     1561 cacgatgtgc ataaagtaat gatcgtaacc gaccgctcaa tggttgatct cggctttgtg
     1621 gatagaatta ccgaacaact tcgccaacgt cgcaaccaag tgatgattca gttctttacc
     1681 gatgttgaac caaacccaag cctgcaaacc gtacaacgtg gtacagaatt aatgcgtagc
     1741 ttccagcctg atactatcat cgcacttggt ggtggttcac caatggatgc agccaaaatt
     1801 atgtggttat tctacgaaca accggaagtc gatttccgtg atttagtgca aaaatttatg
     1861 gatatccgca aacgtgcatt caaattccca caattaggca gaaaagcgaa atttgtcggc
     1921 attccaacca cctccggaac aggctctgaa gtcacaccgt ttgcagtaat taccgatggc
     1981 gatattaaat atccgctcgc tgactactcg cttaccccaa ccattgcgat tgtcgatcct
     2041 gcgttagtaa tgtctgtgcc gtctcacgtt gctgccgaca ccggtttaga cgtattaact
     2101 cacgctaccg aggcttacac atcgatttta gccaacgact ataccgacgg cttagccttg
     2161 caagccatta agttagtgtt tgaaaacttg gaaaaatcgg tcaaagagtt tgatgaaacc
     2221 gcccgtgaaa aaatgcacaa tgcttccaca atggcaggga tggcatttgc caatgccttc
     2281 ttaggtattt gccactcaat ggcacacaaa atcgggggta aattccacac catccacggt
     2341 cgaaccaatg cgattttact gccacacgtt attcgctata acggcacacg cccaaccaaa
     2401 gtggcaactt ggccaaaata caccaattat gtcgcagatg tgcgtttcca agatattgcc
     2461 agaatgcttg gcttaccggc agaaaccccg gaacaagcgg tggaagctta cgcccaagcg
     2521 gtacacgatt tagccgttcg ttgcggcgtg aaaatgtcgc ttcgtgagca aggcgttgat
     2581 gagcaagcct tcttgaatgc ccgccgtgaa cttgccctac acgcatttga agaccaatgc
     2641 acaccagcaa acccacgttt ggcaatgatt gaagatatgg aagcgattat gactaaagcc
     2701 tactatggca aggaataaag cacaatttaa tcgttaaact tactaaatgg ccgcttgcaa
     2761 gcggtcattt ttcttgaaat ttttactttt cccttcacaa aatactttcg ctcttttaca
     2821 aagcatagta tttttatcgc tccttttatc ttacaggaaa tactatgcaa attacgattt
     2881 tagacggcgg aattagccgt gaattaatgc gtcgcaatgc tccatttcat cagcctgaat
     2941 ggtctgctgc cgctttgtat gaaggcccac attttgtgca agcggtacac gaagatttta
     3001 tcgctcacgg ggcagaagtg attactaccg acagctatgc ggttgtgccg tttcacattg
     3061 gcgaaaaacg ctttgcggca gacggcaaaa tgcttgccga tttagccggt cgccttgcca
     3121 aacaagcggt caaaaattca ggaaatattg caactcaaat tgcaggctca cttccaccaa
     3181 tgtttggctc ttaccgtgcc gatttaattc aaatggaacg ctttgctgaa gtcgctcagc
     3241 ctttaattga cgggctttcg ccttatgtgg atatttggct ttgcgaaacc caaagtgcga
     3301 ttattgagcc gatttccatc aaagcattat tgccgaaaga caaccgcccg ctttgggtct
     3361 cttttaccct caccgatgat gaaccaacca ccgagccaca acttcgctcg ggcgaaagcg
     3421 ttaaacaagc agtcgaagaa atggtgaagt taggcgtgca agcgatttta tttaactgct
     3481 gtcagcctga agtgatcggc gaggcattaa gtgtaaccca aaaaacttta gccgaattaa
     3541 aagctaccca tattcgcaca ggagcttatg ccaacgcctt tgctccacaa ccaaaagatg
     3601 ccaccgccaa tgacggttta gatgaagttc gccaagattt aaccctggag gcttatttag
     3661 gctgggcaaa aaaatggacg gaacaagggg caactattat cggtggctgc tgcggcattg
     3721 gggttgagta tattgaaacg ctggcaaaaa atttaaaata aggaaatcga atgtcaaata
     3781 aaaaaatagg attaatttca ctcaccgcct tagtgctaag ctcaatgatt ggctcgggga
     3841 ttttcagctt accgcaaaat atggcagccg ttgccggagc agaagccatt accattggct
     3901 ggctgattac cggtgtcggc attatctttt taggtttatc gtttttcttt atttcccgct
     3961 tgcgtccgga tttagacggt ggcatttaca cctacgcacg ggagggtttt ggcgagctga
     4021 tgggctttat gtcagcgtgg ggctattggc tctgtgccac cattgggatt gtaggatacc
     4081 tcaccgttgc ttttgaaggt ttgggtgtat ttaccgacaa cccgaacacc gtgattttcg
     4141 ggcaaggtaa caccctcgcc tcttttattg gatcttcaat cattgtgtgg ctggttcacg
     4201 ccctcatcgc aggcggtatc aaagaagctg cctttgtaaa cttaattgcc acttttgtga
     4261 aagtcgctcc gctcattctg tttatcgggt taggcatttg gtatttcgat gtggatctgt
     4321 ttaatagcga tgttaaagcc accgcactta ataatagtgt aagcgaccaa gtgaaaagca
     4381 caatgttaat caccttatgg gtatttaccg gtgtggaagg ggcttctgtg ctgtcggctc
     4441 acgcgaaaaa gcgttctgac gtgggactgg caaccgtatt aggtattatt attgcacttg
     4501 ctctttatgt ggcaattacc attctttcac tcggaattct gccacgggaa actattgcca
     4561 atatggcaaa tccgtcaatg gggccgttgc tcgatgcaat gatgggccca accggcaaag
     4621 tgattattac tgcttgttta attgtatcgg tgcttgcctc ttacattagc tggacgatgt
     4681 attcggcaga agtgccttat cgtggctcaa aaaacggggc tttcccgaaa attttagaca
     4741 aagtgaataa aaacggcacg ccgattaact cactctggtt taccggcttt atcgtgcaat
     4801 tttgcttggt gttggtgttt gtttttgagc aaagctataa caccttattg ctgatttcca
     4861 cctcgatgat tttaattccc tatttcttaa tcggggctta tttattcaaa ttagcgattc
     4921 aaaccaacgc cacttggtac attaaactca ccggctttat ggcagccctt tacggattat
     4981 ggattgtcta tgccgcagga ctagaatatt tgctgctttc ggtggtgctt tatgtacccg
     5041 gaattttact cttcctctac tccaactata aattcaacgg cagattaacc ctttcaaccg
     5101 ctgaaaaggt catcttaatc gtgctactgg taatttttgg ctatgccgtg attgagctgc
     5161 cagcactatt agcagcataa ttcccatcaa aaatgaccgc ttgcaagcgg ttatttttct
     5221 aggatcttct gcaaagattc attagaatag aaacaacgtc aataataaat aaaaagagga
     5281 gaaacaatgc aaacttatca acataaagcc ctttgtcggg taagaaccat tacccttttt
     5341 ctgagtttaa ccaaagataa attgcagtgg gaaacggcat taaatgcggc aaaagcagaa
     5401 tttgatctat tagttcccgc tattcaaaca caaggctatc acatacaatc gattcgaatc
     5461 gttaccaaca gtttcgggga atatcttgat ctcactaata ttgaaacagc gaaacaggat
     5521 ttagcctatc ttaaacagct attaacccaa cttaacgata gcggtttacg cattcgcttt
     5581 gccattggtg aggcaaaaac accccacgaa ttagcattac tacctgagct gattttaaat
     5641 tatggtgatt tatctaacgc ttgtgtcaat attgaacccg atgaatttgg gattttagac
     5701 aatgaaacca ttttacaatc tgctcaaatt atcaaacaaa tcgctgaaat taccccaaga
     5761 ggtgaaggca attttaattt tacggtgaat tttaactgta aaccttttat tccttatttt
     5821 ccggcaagct accattcaag caagctccct aacagttttg tgataggcct agaaacacca
     5881 gatctattag tagcggtgtt aaaagagctg aaagccagcc cacataacga cttttatcgc
     5941 caatgctatg aaacgatgtc tcaagccttg caatatcacg ttgatgaagt tctcgaagca
     6001 gtaaaatcgg tacaacacaa attacaattt gcctttgctg gcattgatag ttctgctgct
     6061 ccgtcaaaaa actgtgcctc aatgacagaa gtttatgaat taatgggcgt accatttttt
     6121 ggggcagccg gaacagtaga agcctcttca cttctgacaa aagtctttaa atctatcaaa
     6181 catgtaccgc ttgtcggttt ttcaggttta atgttggcag taaccgaaga tttaggctta
     6241 gccgcaggca cacacaaagc ccaattcgac attcgtgctt tactaactta tagtgctgtt
     6301 tgtggcattg ggttagatac cgtaccgatt tccaatgaag ccactgttga acaaattgcc
     6361 gcattaatgc gagacaccgg cacaatggca tttagactaa ataaaccgct tacagtacgt
     6421 ttatttccaa ttccgaataa gagtgctggg gaagtgacag aatttgaaag tgatgattta
     6481 tgtaactgcc gaattttagc tgtaccttaa aataaaggct gatggatatt tccatcagcc
     6541 tttcaattta cttcaccttc aattttttac ctaccgtgat ctgataattt ttcaaattat
     6601 tcagctcact gattttttgc ggcgtagtac cgtaagctct agcaatcgag taaaccgttt
     6661 catcttgttg gacaatatgg tagccactgt tagacacctt aatttctctt tgagagtctg
     6721 attttttaga ctgatttttt tgatctttct caagagctgt tttttctttt agttgctgct
     6781 cttttttctt attggtttta gccgaatctt cttttttatc ctcttttttg ctcttttctt
     6841 tcaattttgt cttatctgat tgcgtattct tctcttgttt ctcagaagca ggctttttag
     6901 ttaaatcagc tttagcagtt ttttcctctt tcttattttg cttatcttct ttgtccgatt
     6961 ttttactgac cgaagaacta gcaactgcat tttttgcccg ataagcgact aatccattat
     7021 aaatggcccg agcaacttgt ttacgataat ttgcactggc tagctttgct tcctcggttg
     7081 aattagataa aaatcccgtt tccaccaata cagatggaat atcaggtgaa cgcagaacac
     7141 ttaagcttgc gtgctgagga gacgattttg ctaatgcagc cacatttgac attttagcta
     7201 aaatgctctt gcctaattca tagccggcac gttgagagtg agagaactgt aaatcaagca
     7261 ctgtttgatt taaataacgt tcattgttgc ttgaaagcac cgaaccagcc ccgccaagta
     7321 attccgactg cttctcgtgg tcttccaacc atttacccat ttcatcgcta gcacggctat
     7381 tagaaagtac ccaaaccgaa gcccctttca aggaatcgcc acgaggcgaa gagtctgcgt
     7441 gaatagaaac cagcagatcg gcacgatgct tacgggcaat ctcggtacgt tgcggtaatt
     7501 ggataaaata atctcccgag cgtgtcatca ctgctttaaa attaggatcg gcatctaaca
     7561 aggcttttag ctctttagaa attgcgaggg taacgctttt ttccaaaatc cccagatttt
     7621 taccaatagc ccccggatct tttcccccgt gtccggcatc aatcgccaca atggttttgg
     7681 caaatgtgga aaaactgaat aaactcaatg tgctaaaaac aataaatctg ataacttgct
     7741 tcattacctt ccctacaagc ggtctatttt tgatgaaaat ttactaatat atctactgca
     7801 gtttgatttt gcggcaacag gctaatctgc cgtccgtcat tcttataatc aatttggatc
     7861 acaaaatcag cctctggaat cattccttta cctttaactg cccattcaag caaacaaagc
     7921 gtttgtggtt tgaaataatc acgaattccc ataaactcca gctcttcagg atcggctaag
     7981 cgatacaaat caaaatggta aaggctgaaa ggcggaagtt ggtattcttc caccagagta
     8041 taagttgggc tttttacatt gccttgatgc ccgaaagccc gtacgatcga gcgggttaag
     8101 gtggttttac ctgccccaag ttcgccgttt aggtaaacaa ccagcgaatg agcttggtct
     8161 tgcaataaat atttcttaag ttctaacgcg aatgattgac caaattccag caatttagtt
     8221 tcatcttcgc agtaaaaaga gagagaatct gtcattattt ttggtctagc tgaataaaat
     8281 gttcccgata aaatttcaat tcgttaatgg attcacgaat atcgtccaac gctaaatgcg
     8341 tattgccttt actgaattta tctaaaatct ccggtttcca acggcgtgcc agctctttta
     8401 aagtactcac atctaagtgg cgataatgga aataatcggc taaatcaggc atatatttat
     8461 acaaaaaacg tttatcttga gcaatgctgt tgccgcaaat cggagaagcg ccttttggca
     8521 cccagcgttt taagaagtct aaagtttgca actctgctgc ccgttcagtc aatttgctcg
     8581 ctttcactcg ttcaatcagc ccgttagcgg tatgggtttt gacgcaccaa tcactcattt
     8641 tctctaataa atcatcggtt tggtgtaccg caagtaccgg tccttccgct aaaatattta
     8701 aatccttatc ggtcacaatg gtggcgattt caataatgcg ttctttttcc ggatctaacc
     8761 ctgtcatttc aagatcgatc caaattaaat tttgttcgtt ttgagccatt ttatttcctt
     8821 acacttttgc aatttttagg gcatttttga ccgcttgcgg cacaaattgg ctgatgtcac
     8881 cattgtggcg atagatttcc cttaccatcg ttgaagaaag gtaacgccat tctattgaag
     8941 ggggaaaaaa aatagtttct aaatcgcccg ataatttgta atttaactga gcgagttgga
     9001 tttcatagtc aatatcatct gccccacgaa taccacggat taacgctttg gcattctgct
     9061 gtttggcaaa gtctgctaac aatccactaa agccaatcac ctcaatattt tgccactggg
     9121 tacagctttg tttaacaagc tccactcgtt cttcaagact aaaaagcggc tgcttgcttg
     9181 ggttttgagc aacggcaaca atcacttttc caaataagtg agaggctttg caaattatgt
     9241 ccaaatgccc attggtaatg ggatcaaagg tgcctgcata aattacgtta taactcattt
     9301 tatttctcta aataggaggc taataaatcc aaatggcgtt ttaatgcccc ttgattttcc
     9361 tgtaacacgc ttaagccgga ttttgcaatt tcttgtccga tttggggctg cttaagcaat
     9421 aattgaatgc tctcggtcaa agcctcgact gaactttcaa tttcaatcac gcctttcacc
     9481 tcacgcaatt tctcaaagat ttcagggaaa ttataggtgt aaagcccaga aaccaccgga
     9541 atattaaaag cgattggttc aagtggatta tgcccaccgt gtttgaccaa actgcctcct
     9601 acaaaagcaa tgtcagacaa cccatacagt aacatcattt cccccattgt atcacctaac
     9661 attacttgag tattttggct taacgtttta ttctcagtac gttttacata atttaaatct
     9721 gatttttgaa tcagtagctc aactaaacca aaacgctccg gatggcgagg cactaaaatc
     9781 aacactaaat tcgggtaatg ctctaataag agtttatgag catctaaaat cagcttctct
     9841 tccccttcgt gagtactgcc ggcaatccaa atcggtctct ctgttaaatt cagactagct
     9901 ttagttttaa tcaccgattg atgaagctgt ggcgtaattt ctaaatcaaa tttcaggtta
     9961 ccggtattaa ccatttttgc cggtgcataa ccgagtgcta aatagcgatc tcggcttacc
    10021 tcatcttgag ccataatcag actaatttgg ttgagcatat ccttaatgct accttttacc
    10081 cagccataac gcttcgcaga acgtggcgat aagcgggcat tggcaatcac aaatggaatt
    10141 ttacgaatat ttactttacg aattaaattc ggccaaagtt cggtttcaat tacaatcatc
    10201 aatttcggat cgataaaatt caaaaaccgc tcgatagcat caggtaagtc ataaggcaaa
    10261 taaaaatgtg aaacactatt accaaaagca gcttgcacac gcccagagcc tgttggcgtt
    10321 accgttgtga ctatcaacgg aagttcagga tattgcttgc tgactgcctt aatcaaaagc
    10381 gttgcagcaa tcacctcacc aaccgatgcc gcatggatta ccaccccttt tgctttcggt
    10441 ttttccgatt cgtcataaat cccataacgc tcccataaac gtttccgata agccggttgt
    10501 ttacgccctt tgtaccacat taatagcaga accacaggct gtaatagata acttaaacaa
    10561 atatagagta aacgtagcat ttattttcct tataccataa ccctcacctc ttgtgggaga
    10621 gagtcaaata cgccaataaa tcgttcctct cttgttcgag aggggggaac aagcggttat
    10681 ttttaccaaa aattttgcaa tctatatcct caaagacaaa accacggaat aaccttaatc
    10741 cgtggtttat ctcgcatcat tacgcttgat gtggattgcg ggtattcgta ttcactaagt
    10801 tacgcattaa aagtgcaaaa tccaactcaa tatctgccgg cacatctaaa aagacaaaat
    10861 gcccgtcacc gagtgctgcg tccacatttt catttttgcg gttaagcata cgctcgattt
    10921 taaatacaat gttgccttta ggggtcatca tttccactga atcgcccact aagaatttgt
    10981 ttttcactgc cacttccgcc aagccttctg cattgcgttt gccggtaaat tcgcccacaa
    11041 attgttggcg ttctgaaatc gaatagccat attcatagtt ttggtattca tcgtgagtat
    11101 gacgacgtaa gaagccctct gtataaccac ggtgtgcaag gctttcaaga gtatccatta
    11161 aactttcgtc aaacggttta ccggcagcgg catcatcaat cgccttacga tacacctgag
    11221 ccgttctcgc acagtaatag aacgatttcg tacgcccctc aattttcagt gaatgcaccc
    11281 ccatttgagt taaacgctca acgtgttgta ctgcacgcag atctttagag ttcataaaat
    11341 aggtgccgtg ttcatcttca aaggcggtca tttgctcatc agggcgttgt gattctgtat
    11401 aaaggaacac tttatctgtt gcttcgccat tacctagagt aggagccaca tttttgactt
    11461 caatttccgg ctcatactta ggcacaattt gccctacctc atcaatctta ccttcttcca
    11521 ttttatattc ccaacggcaa gcattggtgc aagtgccttg gtttgggtca cgcttattga
    11581 tatagcctga aagcaagcag cgacctgaat atgccataca caaagcaccg tgaacgaaga
    11641 tctcaagctc catatccggc acttgttcac gaatttcttc gatctcttcg agtgataatt
    11701 cacgggataa aatcacacgg gttagcccca tttgacgcca gaatttcacc gttgcccagt
    11761 ttaccgcatt ggcttgcacc gaaagatgaa tatccatttc agggaaattt tcacgcacca
    11821 acataattaa gcccggatca gacataatca aagcgtccgg cttcatatcc actaccactt
    11881 ttagatcttt gatgaaggtt tttaattttg agttgtgtgg cgcaatgttt accaccacat
    11941 agaatttttt tcctaaggcg tgggcttcat caatcgcaac ttttaaattg gcgtggttaa
    12001 attcattatt acgcacacgc aagctataac ggggctgtcc tgcataaatc gcatcggcac
    12061 cataagcaaa agcgtaacgc atatttttta aagaacctgc aggcgaaagt agctcaggtt
    12121 tggcatattt taaagtcata ttattctctt ttctgataac aagtcaggac ttctcgacgt
    12181 gagaagcgta agcggtatat tttctaagaa atattgcgtg atggcaagct aatccattac
    12241 aatccgattt ttatgtgggg aacaatatga aacttaaata ccttttagca acaacattac
    12301 tggctttttc aacatttacc gccgctcaaa gcatcaagac ggagatgatg caaatgaata
    12361 tgcaagcgaa taaattgatg cgtgccgaat cggcagaaga gtttagcgaa attgcgaatg
    12421 atttcattat aattaccgag aaaaccaaag ggatttttcc caatagcgta gaaggcgata
    12481 aagcagctca ggaagattac caagccggta tgcaaaaatt aattgatatg gttaatcaag
    12541 ccagtgagaa agctcaagca ggtgaattgc aagaagcaaa aatgctgatt tccgagcttg
    12601 aaatgatcaa gcgtgaatat cacaaaaaat acaaataatt caacacatta aaagggtgag
    12661 ctaaagctca ccctttctat tcaaattcca gttcaaccga attctcacca agaagtgcct
    12721 ttaattcgct aaacattgcc tcattcgggc tgattcgcca ctctactccg cctttgagca
    12781 ataccctacc ttccgggctt tggtaataaa aatgcagcgg taaagtgcct tctttatgtg
    12841 gggtgatgat agcggtcatt tttttaataa aatctgcaga aagttgctct ttgctaatcg
    12901 ctaacgctaa acttttggca aatcgacccc ttgcttcatc aagggataac acttctcgag
    12961 ccgacatttt cagtccaccg ctgaaatcat caaactgtac cgaacctgtt gccacaataa
    13021 tttggtcttg ttgcatcaaa tgcccgaaat tttctaaggc ttccgagaaa agggtaatgt
    13081 ccaatttccc cgagcgatct tcaatagtcg caatcccaat acggcttcct cgcttggtaa
    13141 ctgccactcg agatgccata acaattcctg aaaccgtggt catttgccct cggaaagtcg
    13201 gttgcaattc attcagccga ttaggggcat agtgggataa ttctttgagg aatctaccaa
    13261 tcgggtgtcc gcttaaatac agcccgagcg tggcacgctc tccatctaaa atcacttgct
    13321 ccgaccattt tggcgtattg gcgtaagcat tttgcacttc ttccggtgtc tcggtaagca
    13381 cgccaaacat atcgctctgc ccgagttcct ccattttagc gtgctgatct gaggctttaa
    13441 gtgcatcttc caaattcttc atcaaggcag ctcggtgagg gcctaatttg tcaaaagcac
    13501 cggacataat caggctttca aaggtgcggc ggttgatttt tttcagatcg acccgagcgg
    13561 ttaaatcaaa tagatcttta aatttcccct ctttttggcg agctgccaga attgcctcaa
    13621 tcggtccttc cccaacgcct ttaattgctc ctagcccgta aacaatttcg cctttttcat
    13681 ttacgctaaa acgatgttta ccgctgttta catcaggcgg cacaacggtt aagcccatat
    13741 tcatacactc atcgtagaac ccgacaattt tatcggtatt atccatctct gaggtcatta
    13801 ccgcagccat aaattctgcc ggataatggg cttttagcca aagtgtttgg taagaaacca
    13861 acgcataagc tgctgagtga gatttattaa agccgtagcc ggcaaacttt tctaccaagt
    13921 caaaaatttg accggcaagt ttaccgtcaa tccctttggc ttccgcccct ttttcaaaca
    13981 cttcacgctg tgcagccatt tcctccggtt tcttcttacc cattgcacgg cggagtaagt
    14041 ccgctccacc gagtgtataa ccggcaagct cttgtgcaat ttgcataacc tgttcttggt
    14101 aaacaatgac cccataagtc ggctcgagaa taggttttaa gcattcgtgt tggtattgcg
    14161 gatcaggata agaaacctct tctttgccgt gtttacggtc aataaagttc tgcaccatac
    14221 ctgattccag cggccctggg cggaatagtg ccaccaatgc gataatatct tcaaaacagt
    14281 ccggcttcag gcgagaaatt aagtctttca ttccccgtga ttcaagctgg aatactgctg
    14341 tagttttagc tgccagcaac agagcaaagg attttttatc atcaagcgga atggtttcaa
    14401 tccgaatcgg ctctttgcct tcacgagcca aacgttcgtt aatcatctcc aacgcccatt
    14461 tgatgatggt gagcgtacgc aagcctaaga agtcaaactt caccaatcct gcatattcca
    14521 cgtcattttt atcaaaatgg gtaaccgggt gtaagccctc gctatcgcaa taaagcggcg
    14581 aaaaatcggt aatcgcagtt ggggcgatca ccacaccacc agcgtgttta cctgcattac
    14641 gagttacacc ttcgagctta cgagccatat caataaggtc tttcacctct tcatcggctt
    14701 catatagctc aggcaatttt ggctcagcgg caaaggcttt ttcaagcgtc attcctggat
    14761 cgggcggaat gagtttggag atgcgatcca caaagctata ggggtgtcca agcactcgcc
    14821 ctacatctcg aatgaccgct ttcgccgcca tagtaccgaa tgtgataatt tgcgataccg
    14881 cttgtcgccc gtaggtttcc gcaacgtgtt caatcacacg gtctcgcccg tccatacaga
    14941 aatcaacgtc aaaatcgggc attgaaacac gctcagggtt gagaaaacgc tcaaaaagca
    15001 aatcaaattc caatgggtca agatcggtaa tcttcaacgc ataagccacc aatgagcctg
    15061 cccctgagcc acgacccggt cctaccggaa tatcattatc tttggaccat tggataaact
    15121 ccatcacgat caaaaagtaa cccgggaacc ccatttggtt gatcacatct aattcaactt
    15181 gcaatctttc gtcataaacc gaccgcttgt tcgccctttc ctcaggatca gggaatagaa
    15241 actctaaacg ctcttctaag ccttctttcg atttttttac caagaaatct tcggtggaaa
    15301 gctcaccggt cgggaaattt ggcaggaaat actcgcccaa acgcacggta accgaacagc
    15361 gtttcgcaat ttcaaccgtg tttgccaatg cactcggtaa atcggcaaac agcttgcaca
    15421 tttcctcttc agtacggaaa tattgtttcg gtgagtattt tttcgggcgt ttcgggtcgt
    15481 ctagggtgta gctgtcgtga atggcaaccc gaatttcgtg tgcgtcaaag tcatcttctt
    15541 tcaagaagac aacatcattt accgccacta acggaattgc atttttttgt gaaaattcga
    15601 ccgcttgttt gatatagcgt tcttcgtctg cccgtccggt acggcaaacg gaaaggtaaa
    15661 aatgattcgg gtaatattgc tgataaaaag ctaatttttc ttcagcttct tgtcggtttt
    15721 ctttgagtaa ggctttaccc acatcgccca ttcgcccgcc ggaaagaatg atgatgccct
    15781 cattcagctc tgctaaccat tcacgttcca ccatcggaaa ttccacatag ccttgctgat
    15841 aggctttgga caaaatttgg gtaatattat ggtagccttt gttgttcttc gccagtaatg
    15901 tcagctcaaa ataatcttca ttgccgctct cggttctaac ataaacatct gccccgataa
    15961 tcggcttaat ccctgctccc aatgcttcgc catagaattt caccaacccg caaaagttta
    16021 taaaatccgt taagcccatt gccaccatat tattagcggc agcggtttta actaaggatt
    16081 ttaccttagc taaaccatta atcattgaga aatcactgtg aacttttaaa tgaacgaaac
    16141 gacaatctga cataggaata taatctaagt aaagaagttt cccctcttta gtaaagactg
    16201 tcaggttcta aaaagtgaag ccttctgtga ataatcccgt tgggcgaatg ttattcgccc
    16261 ctacaaacga gcattattct tgctcagagt tacatttaaa atccgaatgt aggggcgaat
    16321 tacattcgcc ctttcagaac ctaacaaccc tgctttatct aaagaaggga gttaaaatta
    16381 atcacgtttt ttgcttaaca gccaccaaac gatgatcaaa cagagtaggc ttggaattaa
    16441 tgctccaacc ggtataggta accaagtggc aattaagctt aaattgccaa acacaatatt
    16501 tgccacatag aacataaagc cggcaacaat accaatcaca attttcgccc ccatcgtact
    16561 actacgaagc ggcccgaaaa taaaggagat cgcaagtagc atcatcaccg ccattgagat
    16621 tggttggaat acttttcgcc agaaggtgat ctcaaaacgt ttcggatctt gtccggtatc
    16681 ttttaagaag ccgacataat ctgccaagcc tgaaatcgag agcgactccg gtttgagtga
    16741 aacaatgcct aatttgctag gggttaaact ggtttgccaa acttgatctg gctgtttagc
    16801 ttgctggatc tgattttctc ccacagtcga tttttccact ttagatagca cccagccttt
    16861 ttcatcactg taattcgcag ttcgggcttt taaaacagat tgcaattcac gtttgttttg
    16921 tccttcgccg aattgataaa tcagtacgtt atctaagctt ttttcatttt taatatgatt
    16981 aatatagata aatgaattgc catctttcgc ccaaaacccg tcttttgtgg caagcattga
    17041 gccgccactt tgggcaatcg aacgcatatt acgggcaaac tgctcggttt gtggcacgcc
    17101 ccattcgccg ataatcatcg taaaaatgac taacggtaag gcagttttca tcacggctaa
    17161 accaatgcgg aaacgggaaa aaccggaggc ttgcatcacc accaattcac taaggctcgc
    17221 taggttgcct aaaccgagta atgagccaag taatgccgca atcgggaaaa aggtttcgat
    17281 atctcgtgga atagttaaaa aagtatagta tgccgctttt aagccatcgt aagatccacg
    17341 tcctacatca cgaaactctt ccacaaattt aataatcgcc ccaagcccaa tcaacataaa
    17401 cagggttaaa aaaatcgcgg ataaaatcgt tttgccgatg tagcgttcta aaatattcat
    17461 tgagaaaaat tgcattatgc caccgcctta ttggttaatt tttttgcacc aaattgatag
    17521 cgtaacttag acataaattt actatcccac gcatttaaaa taacacctaa aactaaaaag
    17581 gcaactgata ccaacggcat taacacttcc gcattcaact tgcctgatgc ccctgacgat
    17641 tttagcgagc tttgtagtaa gaaatagatt aaataaagca ataacgccgg cagtagttta
    17701 gcaaaacgcc cttgacgagg gtttacacta ctcattggca ccgctaataa tgccattaac
    17761 ggtacagcta aaatcaaagc aagccgccaa tgaagctcgg cttttgcttc cggcgttttg
    17821 gtttccatta atttcttgaa atcggctcgt tgcactaatt tctcatcaga ttcaacgtct
    17881 tgatagccta aataagcaga ataattctca aaatgtgaaa tacggaaatc ggcactttgt
    17941 ggtgtacctt caaaacgctt gctctctgcc aaggttaaga cttgatcccc atttggcaaa
    18001 ccttgcaacg tgccggattc agcaacaacc actgaaggtt tgtttttctt ctgctgttcc
    18061 ggctggaaaa cgtagatatc atttagactg ttattttcaa ttttatcaat aaataacaca
    18121 tagccaccgg cagacataaa ttgtccggcc gaaagagccg caaaacgtgg gttggctttc
    18181 gcttccgcta acatttcact ctgtttatta attgcccaag gcgtaagcca aaacacgtta
    18241 taaaccgcta atgcagtggt aaaaatcgag agaaacatcg ccactttaac caatagccct
    18301 tgcccgatac cacaagcccg cattacggta atttcacttt cggcataaaa ccgcccgagg
    18361 gttaataaca aggcgataaa cagtgagagt ggcagcatta attgtgccat tgtcggcata
    18421 cctaagccta ataagctcac cactaaatct gccggtactt taccactcac agcagaactt
    18481 agaacacgca ctaattgctg acaaaaaaag atcagtaata agataaacaa tatcgccaat
    18541 tggcttttaa atatctcttt ggttaaatat cggcttaaga tcacgttttt tctctataac
    18601 atttacaaat ctgaataccg ctaaacacaa gcggtctatt tttgttaatt ttttgcaaag
    18661 agcgcaaaat aacttattcg aatcgctaat aatacctttt tcatacaaaa aaatcaccta
    18721 tagaaaatat cacgcacggc aaaaccgtgc gtaagtatta ttgttttttc gattttttcg
    18781 atgatgttgc tttatgagct tcaagaatta atttcttacc ttggctatct tcaatttcaa
    18841 tcttaggtgg tgcttccgta ttttgatgaa ggatagctat aatattttca ccttgtgcaa
    18901 tatcttcaaa gtttcctttc acacgtaact tagccgcatc aacactagtg tcaaatacta
    18961 agaatgtacc taatgcggta actctaatat ttttaagccc tatattgtcc ttcgttaccg
    19021 ttttatattg aggtgctttt ttcccttttg cagccataat cttctcttga ttagtcgcaa
    19081 tattaagaat attttgaact ttagtcgctt ctgctgtaga ttgtgcctgt tctgttaaat
    19141 ttggttctcc atcaaaaata acatccccaa caaattgcac ctctttaggc tcattttgca
    19201 ataatggtgc aacgtcttta gctgaaacaa ccaaaaataa ccgttcacct attttttcaa
    19261 aacggacatc aatattggtt aattgtgatt caatttgttc attaattgtc ttgatcgcag
    19321 tttctgtctc attttgaagc gatattttac gtgtaatatc aacatcataa gcaataaaac
    19381 caacttttaa acgttgtgat aactgctgaa gtaaattgcc cacatttcca tcataagaaa
    19441 gacgtaactt tgcctgctca tagcgactaa tttgagcatc atcattagcg aaaatagtgt
    19501 tttgagtccc taagccgatt agaccaacaa caaacgtttt accc
//
LOCUS       DANLZD010000035        19480 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.035, whole genome shotgun sequence.
ACCESSION   DANLZD010000035 DANLZD010000000
VERSION     DANLZD010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19480
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.035"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            44..1519
                     /gene="mepM"
                     /locus_tag="PXE26_000916"
     CDS             44..1519
                     /gene="mepM"
                     /locus_tag="PXE26_000916"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein DD-endopeptidase MepM"
                     /protein_id="HDL5593519.1"
                     /translation="MAVFLLAVFSLFVDIVLALKDQSSINNTSSQEDIIAIDKQEKYQ
                     SINTNLAENNTLHQEQHSSFINYVTDLLTQSALVIEHDDEIVDDQTATSYEDELVGQD
                     DEVEEGIETVENQVPGEKLPEEAEKALEDLLDVADQALRIQNQFSYTVARGDKLKDVL
                     EQSGLTASVAKNLIKQHSALAQLEPGQQFYWVLDNDGELEYMNWLVSEKEERVYERKE
                     NGKFSFQRFEKKGEWKLDVVRGTIQNSFAVSLKAVGLSDRQINQLAVGLQSQIATNKL
                     KKGDRFAILIKREYIDGKVTDLGNVEGIHVISSKKSYYAIQADNGRYYSRYGETLSGG
                     FARHPLLFAARVTSSFNPKRRHPITGRISPHKGVDYGVPIGTPIIAPSDGVVEHVAYQ
                     ARGAGRYIRIKHGHITTVYMHLSKTLVKPGQSVKKGERIALSGNTGGSTGPHLHYEFH
                     INGRPVNPITVKLPGSNSGMGNKERQAFLNKAKNVESRLKM"
     gene            1529..2212
                     /gene="dsbC"
                     /locus_tag="PXE26_000917"
     CDS             1529..2212
                     /gene="dsbC"
                     /locus_tag="PXE26_000917"
                     /EC_number="5.3.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional protein-disulfide
                     isomerase/oxidoreductase DsbC"
                     /protein_id="HDL5593520.1"
                     /translation="MKKNLITLGLMCLSTITFASDAKLKSQLEKIGATDVKISDSPLT
                     GFKMATSNEGVVYISQDGRYVIQGKVFELKNGKAIDITNQGLLAELNSYTNEMIVYPA
                     KNEKHVITVFMDITCHYCHLLHTKIKEYNDLGITIRYLAFPRGGMNTQTAKQMEAIWT
                     SADKVKALNDAEDGKLPTQIKTPDIVKKHYQLGIKFGVTGTPNMVTSEGELIGGYVEP
                     KELAKMLSE"
     gene            2297..4018
                     /gene="recJ"
                     /locus_tag="PXE26_000918"
     CDS             2297..4018
                     /gene="recJ"
                     /locus_tag="PXE26_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HDL5593521.1"
                     /translation="MEKIIKRRPLLTTEIVSTNPLLNRIYQSRGIKNTQELEHNLKNL
                     HRPQQLANIEQAVDLLLQAFREKSRIIIVGDFDADGATSTSLALIALRQLGFDKVDYL
                     IPDRFSQGYGLSVAVAEMVLAKGADLVLTVDNGISSTEGIALLKSHQIQVLVTDHHLP
                     PESLPNADALVNPNLAFCEFPSKSLAGVGVIFYVMMALRSRMREQHLFENKPEPNFAE
                     LLDLVALGTVADVVPLDQNNRILVHQGLQRIRSGHCRLGIKALAEVGKRDLSTLQAAD
                     LGFAIAPRLNAAGRLENMSLGVELLICENMELARRLALDLDSLNQTRKEFEQEMKAEA
                     LSICANLPSLAQSEQAHGIVLYQADWHQGVIGILASRIKDQFNRPVIAFAQESEESEY
                     LKGSARSINGVHMRDLLEHIDMRHPDLIEKFGGHAMAAGLTIHQSKLDLFKQIFDQSI
                     NAIIEPEQLQGIIYTDGELNALEFTLANAEMIRQGGPWGQHFPEPSFEGEFSILQQKL
                     LAGKHLKLMLQSEKGQLFDAIWFNVDVRAFPDLSIKKARLVYRLDINEFRGEKSLQLK
                     VEYLKYI"
     gene            4146..4994
                     /locus_tag="PXE26_000919"
     CDS             4146..4994
                     /locus_tag="PXE26_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDL5593522.1"
                     /translation="MEKKALFRGFLLSTVALAVAACGNLSKVSDEGTTENPVFPKISE
                     SEFNHDGSQFGSWPNWENVRQIEKGMNKDQLYNLIGRPHFEEGLYGVREWDYAFNYRE
                     NGVHKICQFKILFDKNMNAQSFFWYPNGCNGNSSFALTGDFLFDFDKATLTTKGKEVV
                     DNVAQQLKASKAQQVKVAGYTDRLGSAAYNLDLSQRRSNTVKARLVQQGVTAQIEAVG
                     YGKANQVKACDGETGQALKDCLRPNRRVEISANCGVMKQNEGGNVAGPNGPAPLYQTP
                     AYDGSK"
     gene            5082..5900
                     /locus_tag="PXE26_000920"
     CDS             5082..5900
                     /locus_tag="PXE26_000920"
                     /EC_number="3.1.3.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphatase"
                     /protein_id="HDL5593523.1"
                     /translation="MNYQAIAFDLDGTLLSSNATILESSKEAIKKVREKGIKVYFVTG
                     RHHTAVRPYYVELGLDTPVVCCNGTYVYDFKNEKVLSGNPLSAEIASKLVNDAQAQGI
                     HTAVYFEDAMTYESLNIHFTKFQKWVESCAPEVRPNVYQVENFQQEIDKGVTVWKVLI
                     SDPDLAKMQKFVEKLPPDQVSPEWSWVDRVDITSVGNSKGARLAEVLKTEGIDLQKVI
                     AFGDNFNDVSMLETVGLGIAMGNSEPDIQQKAKKTIGSNNEDSIANELKAQFNL"
     gene            5903..7594
                     /gene="narQ"
                     /locus_tag="PXE26_000921"
     CDS             5903..7594
                     /gene="narQ"
                     /locus_tag="PXE26_000921"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarQ"
                     /protein_id="HDL5593524.1"
                     /translation="MIKAKYSIARRIGLYFLIMIGFASIISGISLGIMWSNKSDASLI
                     NVSGSLRMQSYRLLSEMDSKKALLPERLLEYHRTLHATELSSLKQSVLLPDSVIESYQ
                     QLLKDWYEMQSYVAQGDKVNYASHIEDYVQRVDDFVFRLQEFAELKLKIATGVIAIAM
                     LLIIALAYIGVWYTRKKIIGPLRQLVKASWQIQNKDFDHVKLAVNEPNELGLLSSTFT
                     EMSNELLKLYTSLEDKVQDKTRRLLAVNRSLLVLYQCSQLLTAKPINKEVLNQVLKTV
                     FDNEHLLGIDLQVYGAEYWNVSIDNKPSLDWVSAEIAIENEKLGILSWKPSLVCPGER
                     LIQNVSEMIGRSLYVVQMQKQQQQLVLMEERAIIARELHDSLAQSLTFFKIQVSLLKL
                     AKTDEKRNEILTVFEKALNDAYSQLRELLTTFRLTIQEANLQQALEKILESLRPKTSA
                     QIRLSCKLPSHMFNAQQQVHVLQIVREAVINAIKHSQATEINVIAETNDDGEHCLTIQ
                     DNGVGLAAHTQPEGHYGLTIMQERAAELKAEFSIENVESGGVKVQVLLPSMISKR"
     gene            7645..8163
                     /locus_tag="PXE26_000922"
     CDS             7645..8163
                     /locus_tag="PXE26_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDL5593525.1"
                     /translation="MQFRKAVEADFETILAIYNQAIPTHQITADLELATTQNRRKWFD
                     FHLETAQYPIWVVEDEKGIAGWFSFSPFYERPAFLHTSEISIYLDRYSKGKGYGSKII
                     EFMQAEMLNHNIHTLMAYVFELNTVSQNLMRKHGFEQWGRFPNIANMGKDEKGEDKWR
                     TLLMMSYQKGIE"
     gene            8206..8805
                     /gene="rdgB"
                     /locus_tag="PXE26_000923"
     CDS             8206..8805
                     /gene="rdgB"
                     /locus_tag="PXE26_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HDL5593526.1"
                     /translation="MEKTKIVLATSNADKVKEMADVLSQFGFEVVAQSEFGIESPEET
                     GLTFVENALIKARFAAKMTGLPAIADDSGLSVMALGGEPGLYSARYAGEQATDADNRQ
                     KLLAKMQGQENRLAKFVSCIVFLKHETDPTPYIASGECFGEILTEERGENGFGYDSLF
                     FYPPKACTFAELETKEKKAISHRAIALEQLKQQLAGENK"
     gene            8802..9122
                     /locus_tag="PXE26_000924"
     CDS             8802..9122
                     /locus_tag="PXE26_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjQ family protein"
                     /protein_id="HDL5593527.1"
                     /translation="MIITTTPTIEGKQIVEYKGLVFGEVVSGANFIRDFLAGITDIIG
                     GRSGAYESKLNGARKEALAELAKEAQKVGANAVVGVSMEYQSMGGDKGMFIVVATGTA
                     VVIR"
     gene            9126..9578
                     /locus_tag="PXE26_000925"
     CDS             9126..9578
                     /locus_tag="PXE26_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgN family cysteine cluster protein"
                     /protein_id="HDL5593528.1"
                     /translation="MQFEQHFEANFWQNKSLLEMNDAEWEALCDGCGKCCYRKYIQGR
                     GRRERLYYTSVACNLLDVNTGRCMNYSNRFKIESDCTKLTKKNLPDFGWLPKTCAYRL
                     LYEGKPLFDWHPLISKDPDSVKNAGMLIANGIHEKDVIDWFEFVIDEV"
     gene            complement(9619..10200)
                     /gene="lpcA"
                     /locus_tag="PXE26_000926"
     CDS             complement(9619..10200)
                     /gene="lpcA"
                     /locus_tag="PXE26_000926"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HDL5593529.1"
                     /translation="MYLEQIKAELQEAADVLDKFMSDEKNIKLIQDAAMLIANSFKQG
                     GKVISCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFS
                     RYLEAVGQKGDVLFGLSTSGNSKNVLNAIKVAKEKGMKVIAMTGKDGGQMAGLADVEI
                     RVPHFRYADRIQEIHIKVIHILMMLIEFEMEKA"
     gene            10509..11468
                     /locus_tag="PXE26_000927"
     CDS             10509..11468
                     /locus_tag="PXE26_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HDL5593530.1"
                     /translation="MVVNPESFEQIIGQSVKIKEVVEQAKKFANLDAPLLIQGETGTG
                     KDLFAKSCHHFGSRRMQKFIAVNCAGLPAEEAESEMFGHRGNGVESVGFFEYAHGGTV
                     LLDSISELSLEMQAKLLRFLNDGSFRRVGEDQEIQVNVRVICTSLQPLSLLVEKGKVR
                     EDLFHRLNVLTLNLPPLRDRKEDIPLLADYFIAQISNQLGVSKLEYDNVFLQALQNYH
                     WRGNLRELYNALYRACTLSHSYRLAVKDLHLPRDMEAMIEVREEATLEEMMSQYEAQL
                     LHQFYAEYPSTRKLAQRLGLSHTAVANKLRQYGLTKNGNSKDE"
     gene            11461..13212
                     /locus_tag="PXE26_000928"
     CDS             11461..13212
                     /locus_tag="PXE26_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5593531.1"
                     /translation="MNKLAVIFSVCFANLGLNSTAYAAPSIPQELLENSLVYCTTSSG
                     FSFNPQKSDVSSNMNVVTEQIYDKLVEFNPKKNRLEPALAESYSISDDGLVITLRLRK
                     NVAFHTTPWFTPSRKLNAEDVVFSLKRMIGKESDLPEVKSEPESVLHHQRQSYIYQKT
                     AGQIYFPYFESVDLANKIASIHSPSNDIVKIELVRPDSALLAHLASQYAVILSKEYAL
                     QLNADDNLVQLDLLPVGTGVYQLESYENNDYVRLKPNMNYWGKKAYIQNMVVDFSTEA
                     TGRMAKFLNNECDVVAFPEPSQLSVLNNRQLISSKGANLVYLAFNMQRGIGQDLALRQ
                     RIARGINRKRIAEKLFYGTGEVADNLLPTALWSKKNNGSYPYQPHQNSGEQAVEMHDS
                     IINRSLDSKTETEEVNQKQRLKLWVIDEKRVYNQHPLKMAEMIRADLATQNLEVEIRA
                     VSRAYLVQQLANKSADYDLILGGWLANNLDPNSFLEALLSCKAAETVTNLSNWCNEDF
                     DFWLQTARLSDDPASANLLYEFAQKLLEEQLPILPLMNANRVLVIKDGVKQADISPFG
                     QVKLSELRLGLGHKKGN"
     gene            13215..14180
                     /locus_tag="PXE26_000929"
     CDS             13215..14180
                     /locus_tag="PXE26_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5593532.1"
                     /translation="MLIVFFRKIFLTLITLIFLSLISFNILLRDPLNHLAELGWFEAY
                     CYYVKSLLNGDFGISFSNGEPLTAQILQVFPATITLCLSALIVSLIIGLPLGFFAATQ
                     QKNMVGRLLNTLGSLSLAVPVFWLALVLMYYASLNQWEVSAIGEIHSLYPKQMVTGFL
                     LLDIWLSDVPYKLKMMQSALHHLALPTLVLAVPATLEVMHITQARAGYVMKQNYIKIA
                     KTRGWTPFRVWRTHIICNTLPALLPMIARTFILIFAFGMLIENIFSWGGIGRWLINAL
                     AIQDYNAISAGVVAIGVFVLLVDMVTGFVRVMLDPSDKKDWYGSY"
     gene            14167..15060
                     /locus_tag="PXE26_000930"
     CDS             14167..15060
                     /locus_tag="PXE26_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5593533.1"
                     /translation="MAVIKEPEQFRETNAFKAFWFHFRQDKLALGSFYLFLLLLALIF
                     VGSLLAPYNYNEQFVGLELMPPSWDDKGQISHFLGTDDLGRDILSRIMYGFYYTLGSA
                     LMITLLIAIIGGMIGIYAGLKKGRSFWLISHLFDTFLFMPILLIAIIIATLMEASLVN
                     AMLAIFLAMLPHFIHKIYQATEKQLKKEYIITLKLDGASCWYLIREVIIPNLTGVAIK
                     ALSHIFVIAILDISALSFIMLGAKSPTPEWGAMIRESMELIYIAPWTVILPGLAIIFS
                     IFTVTILGTRLSVIFEKYRKE"
     gene            15131..16183
                     /locus_tag="PXE26_000931"
     CDS             15131..16183
                     /locus_tag="PXE26_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5593534.1"
                     /translation="MALLDIRHLSIEIDMPKGRVKMVDNINLTVDEGEICGLVGESGS
                     GKSLIAKVICGMIKDEWIVSADRFRFDDIELLKLSPAERRKLVGDHISMVFQDPLTSL
                     DPSQQIGKQLMQTIQFRGKWWQRFGWKKKKAIELLHRVGIRDHQDIMKSYPSDITEGE
                     AQKVMIAMAVANQPRLLVADEPTNIMESTTQLQVYRLLSSMNQNLGTSILLVSNDMRS
                     IQNWVDSYNVLYCGQTVEIADKESILESSYHPYTRVLLNSSPDFSQPLAFKSSLNTLR
                     GSVPMLQEMPIGCRLGPRCPFAQKKCINKPPLVKVKQHEFACHFPINFREQNLLKNKT
                     ENTPFVVAEIAEKEAF"
     gene            complement(16192..16422)
                     /locus_tag="PXE26_000932"
     CDS             complement(16192..16422)
                     /locus_tag="PXE26_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HDL5593535.1"
                     /translation="MKLTACKLVFLLYLMFNLTACGTVLSLVEQDYRVYAGVIKDFQV
                     MQEGGIFAVLAVIDLPLSFVLDTLMLPVTLSQ"
     gene            16552..17634
                     /gene="leuB"
                     /locus_tag="PXE26_000933"
     CDS             16552..17634
                     /gene="leuB"
                     /locus_tag="PXE26_000933"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HDL5593536.1"
                     /translation="MQTYNIAVLAGDGIGPEVMAEAIKVLEATQQKFGFKLNFNQYNI
                     GGAAIDAQGKALPENTLKGCEEADAILFGSVGGPKWTHLLPDEQPERGSLLPLRKHFS
                     LFCNLRPAALYQGLEKFCPLRADIAAKGFDMVVVRELTGGIYFGQPKGRDGEGAQTRA
                     FDTEVYYKYEIERITRVAFESAMKRKKHVTSVDKANVLQSSILWRETVTEVAKEFPEV
                     TLEHMYIDNATMQLIKAPESFDILLCSNIFGDIISDEAAMITGSMGMLPSASLNEQGF
                     GLYEPAGGSAPDIAGKNIANPIAQILSAAMMLRYSFNLGDAADAIETAIQKALADGYR
                     TADLADDSKPLSTSEMGDIIAKNILA"
     gene            complement(17721..18116)
                     /gene="msrB"
                     /locus_tag="PXE26_000934"
     CDS             complement(17721..18116)
                     /gene="msrB"
                     /locus_tag="PXE26_000934"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HDL5593537.1"
                     /translation="MIKPIHALTEQQVDILINHGTERPFTGKFLNEHRVGIYRCARCH
                     NDLFHSDTKFDAGCGWPSFYQTISESSLRYLDDYSLGRHRIEIRCGNCDSHMGHVFPD
                     GPPPTGLRFCLNSAALNFKWEETGEEIDG"
     gene            18341..19345
                     /gene="gap"
                     /locus_tag="PXE26_000935"
     CDS             18341..19345
                     /gene="gap"
                     /locus_tag="PXE26_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010129843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HDL5593538.1"
                     /translation="MAIKIGINGFGRIGRIVFRAAQHRDDIEVVGINDLIDVDYMAYM
                     LKYDSTHGRFDGTVEVKDGQLVVNGKAIRVTAERDPANLKWNEIGVDIAVEATGLFLD
                     DETARKHITAGAKKVVLTGPSKDATPMFVNGVNFDTYAGQDIVSNASCTTNCLAPLAK
                     VIHEKFGIKEGLMTTVHATTATQKTVDGPSAKDWRGGRGASQNIIPSSTGAAKAVGKV
                     LPALNGKLTGMAFRVPTTNVSVVDLTVNLEKPATYAEICAEIKRASENEMKGVLGYTE
                     DAVVSTDFNGATETSVFDAAAGIALTDTFVKLVSWYDNEVGYSNKVLDLVAHVYNYKG
                     "
BASE COUNT         6217 a         3284 c         4174 g         5805 t
ORIGIN      
        1 aattttagcg agagatcgta agcgacataa aaaacatttt aagattgcgg ttttcttatt
       61 agcggtattt agtctatttg ttgatattgt tctcgcacta aaagatcaat cctcaatcaa
      121 taatacatct tcacaggaag atattattgc cattgataaa caggaaaaat atcagagtat
      181 caacactaat ttggcggaaa ataatactct ccatcaggag caacattcca gttttattaa
      241 ttatgtgact gatttactga ctcagtcggc attagtaatc gaacatgacg acgaaattgt
      301 tgatgatcaa acagcgactt cttatgaaga tgaattagtt gggcaagacg atgaagtaga
      361 agaagggatt gaaacggttg aaaatcaagt tcctggggaa aaactcccag aagaagctga
      421 aaaggcatta gaagatttac ttgatgtggc tgatcaagca ctacgaattc aaaaccaatt
      481 cagttatacc gtagctcgag gtgataaact taaagatgta ttagagcaat caggcttaac
      541 tgcatccgtt gcgaaaaatt taattaagca acattcggca ttagcacaat tagaaccggg
      601 tcaacaattt tattgggtat tagataatga cggtgaatta gaatatatga actggctggt
      661 ttccgaaaaa gaggaacggg tttatgagcg aaaagaaaat ggtaaatttt cttttcaaag
      721 atttgagaaa aaaggggaat ggaagttaga tgttgtaaga ggaactattc agaatagttt
      781 tgcggttagc ttaaaagccg ttggcttatc agaccgccaa attaaccagc tagcggttgg
      841 attgcagtca caaattgcga cgaataaatt aaaaaaaggg gataggtttg caattctgat
      901 taagcgggaa tatattgacg gcaaagtaac ggatttagga aatgtggaag gaatccatgt
      961 aattagcagt aaaaaaagtt attatgctat tcaagcagat aatggacgct attatagtcg
     1021 atatggtgaa acattaagtg gaggatttgc tcgtcatcca ttattatttg cagcaagagt
     1081 aacttcttct ttcaacccca aacgcagaca ccctattaca gggagaatta gtccgcataa
     1141 aggggttgac tatggcgtgc caataggtac tccgatcatc gcaccaagtg atggtgtcgt
     1201 agagcatgtg gcatatcaag cccgtggagc aggacgttat attcggataa aacacggaca
     1261 tattacgact gtttatatgc acctcagcaa aacgttggta aaaccagggc agagtgttaa
     1321 aaaaggggag cggatagcat tatcgggtaa tacaggcggt tcaaccgggc ctcatttaca
     1381 ctatgaattc catattaatg gtcgaccggt caacccgatt acggtaaaat tgcctggctc
     1441 aaattcaggt atgggtaata aagaacgtca agcattctta aataaagcga agaatgtaga
     1501 aagtagatta aaaatgtaag gattctcaat gaaaaaaaat ctaatcactt taggattaat
     1561 gtgtttatca accatcacgt ttgcttcaga tgcaaaacta aaaagccagc ttgaaaaaat
     1621 tggagccaca gatgttaaaa tttcagattc tccattaaca ggctttaaaa tggcgacttc
     1681 aaatgaaggt gttgtatata tcagccaaga cggtcgttat gtaattcaag gtaaagtatt
     1741 tgagctaaaa aatggtaaag cgattgatat tactaatcaa ggattgttgg cagaattgaa
     1801 ttcatacact aatgaaatga tcgtatatcc agcgaaaaat gagaaacatg tgattacggt
     1861 gtttatggat attacttgcc attattgcca tttactacat actaaaatca aagaatataa
     1921 tgatttaggt attaccattc gctatttggc attcccgcgt ggtggaatga atacccaaac
     1981 agcaaaacaa atggaagcta tttggacatc agcagacaaa gtaaaagcac tgaatgatgc
     2041 tgaagatggt aaattaccaa cccaaataaa aacgccggat attgtgaaaa aacattacca
     2101 attagggatt aaatttggtg tgacaggtac cccaaatatg gtaacttcag aaggtgagtt
     2161 gattggtggt tatgtagagc ctaaagaatt agcgaaaatg ttaagtgagt aattcattaa
     2221 cttgaataca agcggtcttt ttttgtaaaa tttttgcaaa agaagaccgc ttgttgtttc
     2281 attaaagaag agtattgtgg aaaaaataat taaaaggcgc ccattattaa caacggaaat
     2341 agtctctaca aacccgttat taaatcgaat ctatcaaagt cgaggcataa agaatacgca
     2401 agaactagag cataatttaa agaatttgca tagaccacag caacttgcca atattgagca
     2461 agccgttgac ttgctattac aagcctttcg tgaaaaaagc cggatcatta ttgtgggtga
     2521 ttttgatgca gatggtgcaa ccagtacatc gcttgccctt attgcgttac gccaattggg
     2581 tttcgataag gtagattatt taattccgga tcgtttttct caggggtacg gattgagtgt
     2641 agcggttgct gaaatggtat tagcaaaagg ggcggattta gtcttaacgg tagataatgg
     2701 aatttcttcg actgaaggca ttgctctgct aaaaagccat cagattcaag ttttggttac
     2761 cgatcatcat ttaccgccag agagcctacc caatgcagat gcactggtaa accccaattt
     2821 agctttttgt gaatttccgt ctaaatcttt agccggggta ggcgtgatct tctatgtaat
     2881 gatggcattg cgttctcgta tgagagaaca acatttattt gaaaataaac cagagccaaa
     2941 ttttgctgaa ttactggatt tagtcgcttt aggcacagtg gctgatgtag tgccgttaga
     3001 tcaaaataat cggatattgg tgcatcaagg gttacagcga atccgttcag ggcattgccg
     3061 tttagggata aaagctttag cggaggtggg caagcgagat ctttctactt tgcaagcagc
     3121 agatttgggt tttgctatcg caccacgttt gaatgcagct ggtcggttag aaaatatgtc
     3181 tttaggggtt gagttactaa tttgtgaaaa tatggaatta gctcgccggc ttgcgcttga
     3241 tcttgattct cttaatcaaa cccgaaaaga gtttgaacaa gaaatgaaag cagaagcact
     3301 gtcgatttgt gcgaatttgc caagtcttgc gcagtctgaa caggcacacg gaatagtgtt
     3361 atatcaagca gattggcacc aaggtgtaat tgggatctta gcttctcgca ttaaagatca
     3421 atttaaccgt cctgtcattg cttttgcaca agaaagtgag gaaagtgaat atctaaaagg
     3481 ttctgctcgc tcgatcaacg gagtacatat gcgagattta ctggaacata tcgatatgcg
     3541 acatccagac ttgattgaaa aatttggtgg acacgcaatg gcggctggtt tgactatcca
     3601 tcaatcaaaa ttagatttat ttaaacagat atttgaccaa tctattaatg caattatcga
     3661 gcctgagcaa ttacaaggca tcatttatac cgatggtgag ttaaatgcac tagagtttac
     3721 tttagccaat gccgagatga ttaggcaagg tgggccttgg ggacaacatt ttccagaacc
     3781 tagttttgaa ggggagttta gcattctcca acaaaaatta ctcgcaggta aacatttaaa
     3841 attaatgttg caatcagaga aagggcaact atttgatgca atttggttta atgtggatgt
     3901 aagggcgttt cctgacttat cgatcaaaaa ggcaagatta gtttataggt tggatattaa
     3961 tgaatttcga ggagagaaat ctttgcaatt aaaagtggag tatcttaaat atatttgaaa
     4021 tgttatttta tgtaaattta atagaattaa ttatatttgt attgtagaat ccgtccgaat
     4081 gcaactttaa taggttgtga agctattttt ttatacagat tactataagg aaacttaata
     4141 tgaaaatgga aaaaaaagcc cttttccgtg gatttttatt atcgacagtg gcattagcag
     4201 tggctgcttg tggtaactta agtaaagtga gtgatgaagg aacaactgaa aacccggtat
     4261 tcccgaaaat ctcagaatct gaatttaacc acgatggttc acaatttggt tcatggccaa
     4321 actgggaaaa cgttcgtcaa attgaaaaag ggatgaacaa agatcaatta tataatctaa
     4381 ttggtcgtcc tcattttgaa gaaggcttat atggtgttcg tgaatgggac tatgcattca
     4441 attaccgtga aaatggcgta cataaaattt gccaatttaa aattttattc gataaaaata
     4501 tgaatgcaca aagtttcttc tggtatccaa atggatgtaa tggaaactca tcatttgctt
     4561 taactggcga tttcttattc gatttcgata aagcgacttt aactacaaaa ggtaaagaag
     4621 ttgttgataa tgttgctcaa caattaaaag catctaaagc acaacaagtt aaagtagcag
     4681 gctatacaga ccgtttaggc tctgctgctt ataacttaga cttatcacag cgtcgttcta
     4741 atacagttaa agctcgttta gtacaacaag gcgttacagc acaaattgaa gcggtaggtt
     4801 atggtaaagc gaatcaagta aaagcttgtg atggtgaaac tggtcaagca ttaaaagatt
     4861 gtttacgccc taaccgtcgt gttgaaattt ctgcaaattg tggtgtaatg aaacaaaatg
     4921 aaggtggcaa tgttgcaggt cctaatggtc cggctccact ttatcaaacc ccagcatatg
     4981 atggcagtaa ataatttcta gttttgacta acttagagta gaatattaag gcaaccaaat
     5041 ggttgccttt tcttttatct atttatttat aggggaatac tatgaactac caagctattg
     5101 catttgattt agacggaaca ctactttcat cgaacgcaac aattttagaa tccagtaaag
     5161 aggctattaa aaaggtaaga gaaaagggaa ttaaagtcta ctttgttacc ggtaggcacc
     5221 atactgcggt tcgcccttat tatgtagaac tagggctgga tacgccagtt gtgtgttgca
     5281 atggcactta tgtgtatgat tttaaaaatg aaaaagtatt aagcggtaat ccgttatcag
     5341 cagaaattgc ttcaaaatta gttaatgatg cacaagctca agggattcat actgcggttt
     5401 attttgaaga tgcaatgact tatgagtctt tgaatattca cttcactaaa ttccaaaaat
     5461 gggttgagtc ttgcgcacca gaagttcgtc cgaatgttta tcaggtagaa aatttccaac
     5521 aagaaattga taaaggtgta accgtatgga aagtgcttat tagcgatcca gatcttgcca
     5581 aaatgcaaaa atttgttgaa aaattaccgc ctgatcaagt aagcccggaa tggtcttggg
     5641 ttgatagggt tgatattacc agtgttggta acagcaaagg ggcaagatta gcggaagtat
     5701 taaaaacaga aggtattgat ttacaaaagg tgattgcctt tggcgataat ttcaatgatg
     5761 tttctatgct agaaaccgtt ggattaggca ttgcaatggg aaattcagaa ccagatattc
     5821 agcaaaaagc gaagaaaact ataggttcaa ataatgaaga tagtattgct aatgaattga
     5881 aagctcaatt taatctttaa ttatgataaa agcaaaatac tctattgcta ggcggatagg
     5941 actctatttt ttaattatga tcggatttgc ttcgattatc agtggaatct cacttggtat
     6001 tatgtggagc aataaatctg atgcgagcct gattaatgtt tcaggctcac ttcgtatgca
     6061 aagttatcga ttgttatcag aaatggattc aaaaaaagcg ctgctacctg agcgattgtt
     6121 ggaatatcat cgaacgctac atgctacaga gcttagttca ttaaagcaaa gtgttttatt
     6181 gccagatagc gtgatagaaa gctatcaaca attacttaaa gattggtatg aaatgcaatc
     6241 ttatgtcgct cagggagata aagttaatta tgcttcgcac attgaagatt atgtgcagag
     6301 agttgatgat tttgttttcc gcttacaaga gttcgctgag ttaaaattaa agattgcaac
     6361 aggcgtgatt gcgattgcaa tgttactgat tattgccctt gcttatattg gcgtttggta
     6421 tactcgaaaa aagattattg gacctttaag gcaattggta aaagcgagtt ggcaaattca
     6481 aaataaagat tttgaccacg taaaattagc ggttaatgaa cccaatgaat tagggctact
     6541 ttcctctact tttactgaga tgtctaatga attattaaaa ttatatactt cattagaaga
     6601 taaagttcag gataaaacac gtcgtttatt ggcggtaaat cgttctttac tggtattata
     6661 tcaatgctct caattattaa ctgctaagcc gattaataaa gaagtgttaa atcaagtact
     6721 taaaacggta tttgataatg aacatttgct agggattgat ttacaagtat atggggctga
     6781 atattggaat gtatcaatag acaataaacc aagtttagat tgggtttctg ctgaaattgc
     6841 aatagaaaat gaaaaattgg gtatcttaag ctggaaaccc tcactggttt gtcctggtga
     6901 acgattgatc caaaatgtgt cggaaatgat tggtcgtagc ctttatgtag tgcagatgca
     6961 aaagcaacag caacaattgg tactcatgga ggagcgtgca attattgctc gtgagttaca
     7021 cgattcctta gcccaatctc ttacgttttt caaaattcag gttagcctgc ttaagcttgc
     7081 taaaacagat gaaaagcgta atgaaatttt aactgtattt gaaaaagcgt taaatgatgc
     7141 ttacagccaa ttaagggagc tgttgacgac gtttaggcta acgattcaag aagcgaattt
     7201 acaacaagcg ttagaaaaaa ttttagaaag cttaagaccg aaaacctcag cacagattcg
     7261 cttaagttgc aaattacctt cgcatatgtt taatgctcag cagcaagttc acgtattgca
     7321 aattgtacga gaagctgtga ttaatgctat taagcattcg caagccactg aaattaatgt
     7381 gattgctgaa acaaatgatg atggtgaaca ttgtttgact attcaagata atggcgtagg
     7441 gcttgctgcc catacgcaac cagaagggca ttatggactg acgattatgc aagaacgggc
     7501 ggctgaactc aaagccgaat tttcgattga aaatgtggaa agtggcggag taaaagtaca
     7561 ggttttattg ccgagtatga ttagcaagcg gtaataaaat attaattttt tgcgtattat
     7621 tggcaacgaa taaaaggata acaaatgcaa ttccgaaaag cagtagaagc ggattttgag
     7681 acaatattgg caatttataa tcaagcaatt cccactcacc aaattaccgc cgatttagaa
     7741 ctggcaacta cgcaaaatcg gcggaagtgg ttcgattttc accttgaaac agcccaatat
     7801 cctatttggg tggtcgaaga tgaaaaaggc attgctggct ggtttagttt ttcaccattt
     7861 tatgaaagac cggcattttt acatacttcg gaaatcagta tctatttaga ccgctattcc
     7921 aaaggaaaag gctatggctc aaaaattatt gagtttatgc aagctgaaat gcttaatcac
     7981 aatattcata cgttgatggc gtatgtgttt gaattaaata cagtgagcca aaatctaatg
     8041 agaaaacacg gctttgaaca atggggaaga tttccgaata ttgctaatat gggaaaagat
     8101 gagaaaggtg aggataaatg gcgaacgttg ctgatgatgt cttaccaaaa aggtatcgaa
     8161 taacaagcgg tgatttttta gaatattttt gcaaataagg acaatatgga aaagacaaaa
     8221 attgtacttg caacaagtaa tgcagataaa gttaaagaaa tggcagatgt actctcacaa
     8281 tttggttttg aggtggtggc tcaaagtgaa tttgggattg aatcaccgga agaaaccggt
     8341 ttgacttttg ttgaaaatgc gctgattaaa gcacgatttg ctgctaaaat gacaggttta
     8401 ccggcgattg ccgatgattc aggtttatcg gttatggcac ttggtggtga accggggcta
     8461 tattctgcac gttatgccgg agagcaggca accgatgccg ataatcgcca aaaattacta
     8521 gccaaaatgc aagggcaaga gaatcgtctg gcgaaatttg tcagttgtat cgtgttttta
     8581 aaacacgaaa ctgacccaac accttatatt gcgtcgggtg aatgtttcgg tgaaattttg
     8641 acggaagaaa gaggtgaaaa tggtttcggc tacgattccc tgtttttcta cccaccgaaa
     8701 gcttgcactt ttgccgaatt agaaaccaaa gagaaaaaag cgatttcaca ccgtgcaatc
     8761 gcactagagc aattaaaaca gcaattagca ggagagaata aatgattatt acaactacac
     8821 ctacgataga gggtaaacaa attgtagaat acaaagggtt agtatttggc gaagtagttt
     8881 ctggggctaa ttttatccgt gatttcttag ccggtatcac cgatattatt ggcggacgtt
     8941 caggtgctta tgaaagcaaa ttaaacggtg caagaaaaga ggcattagct gaattagcta
     9001 aggaggcaca aaaagtgggg gcaaatgcgg tggttggcgt ttctatggag tatcaatcaa
     9061 tgggcggcga taaaggaatg ttcatcgtgg tagcgactgg tactgcggtt gtaatacgtt
     9121 aatttatgca gtttgaacaa cactttgaag caaatttctg gcagaacaaa tcgctacttg
     9181 aaatgaatga tgctgaatgg gaagcattat gtgacggttg tggtaagtgc tgctaccgga
     9241 aatatattca gggaagaggg cggcgtgaac ggctttacta tacctcggtt gcctgtaatt
     9301 tattagatgt gaatacaggc cgttgtatga attactcgaa ccgttttaaa attgagtcgg
     9361 attgtacaaa attaactaaa aagaacttac ctgattttgg ctggttgcca aaaacctgtg
     9421 cttatcgttt actttatgaa ggaaagcctc tttttgattg gcacccttta atctctaaag
     9481 atcctgattc tgtaaaaaat gccggaatgc tgattgctaa cggtattcac gaaaaagatg
     9541 tgattgattg gtttgagttt gttattgatg aagtatgaga aaaaggcgtt tggtgcaaac
     9601 gcctttttgt tatagagatt aggctttttc catctcaaat tcaattaaca tcatcaaaat
     9661 atgaatcact ttaatgtgaa tttcttggat gcggtctgcg taacggaaat gaggtactcg
     9721 gatttccaca tcggctaatc ctgccatttg cccgccatct ttgccggtca ttgcaatcac
     9781 tttcatgcct ttttctttgg caactttgat cgcatttaac acatttttag agttaccaga
     9841 ggttgataga ccaaagagta catcgccttt ttgcccaacg gcctctagat aacgagagaa
     9901 gacatattca taaccgaagt cattacttac acagcttaaa tggctgacat cggaaatagc
     9961 gattgccggg tatccgggac ggttttcacg gtaacgacct gttaattctt cggcaaagtg
    10021 catcgcatca cagtgcgaac cgccattacc gcaagaaatc accttaccac cttgcttgaa
    10081 actatttgca atcagcatgg cggcatcttg aattaattta atattttttt catcagacat
    10141 aaatttgtct aatacatctg cagcttcttg aagctcagct ttaatttgtt ctaaatacat
    10201 catttgctcc tttgtttgca aaacgcttac ctttaaacat cggctttacc aatgggggta
    10261 gcgagtaaaa aattcgtttt ttatgaccgc ttgaggcata aaaagtgcaa taagtttaga
    10321 agatctatgc tgtattgtaa acctaataac ttaaataatc tgaatagggt tgtaaacaaa
    10381 agtttccaaa agagaaaaat agcggtatga tcgcctcaca atccctctcg cattgttaac
    10441 tctagtagct aatatcaggc tttaagcgta ttaaacaatg cacaaatttg ctatttatag
    10501 gagactatat ggtcgtaaat ccagaatctt ttgaacagat aattggacaa tctgtaaaga
    10561 taaaagaggt tgttgaacaa gcaaaaaaat ttgccaacct tgatgcacca ttattgattc
    10621 aaggtgagac gggaacagga aaagatttat ttgccaaatc ttgtcaccat tttggatctc
    10681 gtcgaatgca aaaatttatt gccgtgaact gtgccggttt accggctgaa gaagcagaat
    10741 cggaaatgtt cggacatcgt ggcaatggcg ttgagtccgt cggtttcttt gaatatgctc
    10801 acggtggtac agtattatta gactctattt ctgagttatc gctggaaatg caagccaaat
    10861 tattgcgctt tttaaatgat ggctcttttc gtcgagtggg cgaagatcaa gagattcaag
    10921 tcaatgttag ggtgatctgt acttcattac agcctttgtc attattagtt gaaaaaggca
    10981 aagtaagaga agatctgttt catcgtttaa atgttctcac tttaaattta ccacctttgc
    11041 gagatcgaaa agaggatatt ccattattag ctgattactt tatcgcccaa attagcaatc
    11101 agttgggggt gagcaaatta gagtatgata atgttttttt gcaagcattg cagaattatc
    11161 actggcgagg caacttaaga gagctttata acgcacttta tcgagcttgt acactttcgc
    11221 atagctaccg tttagcggta aaagatcttc atttacccag agatatggag gcgatgattg
    11281 aagtacgtga ggaggcgaca cttgaggaaa tgatgagcca gtatgaagcc caattattgc
    11341 accaatttta tgcagaatat ccgagtaccc gaaaattagc acaacggctc ggactttcac
    11401 atactgcggt ggcaaacaaa ttgcgtcaat atgggttaac aaaaaatgga aacagtaaag
    11461 atgaataaac tagcggtcat tttttcagta tgttttgcaa atttagggct aaattcgacc
    11521 gcttacgcag cgccaagtat tcctcaagag ctacttgaaa atagccttgt gtattgcact
    11581 acttcatcgg gattctcttt taacccacaa aaatccgatg tgagttcgaa tatgaatgtg
    11641 gtaacagagc agatctacga taaattagtt gagtttaatc cgaaaaaaaa tcgactagag
    11701 cctgctttag ctgaaagtta ttcaatcagc gacgatggtt tagtgattac attacgttta
    11761 agaaaaaatg tcgcttttca tacaactcca tggtttactc cgagtcgtaa attaaacgca
    11821 gaagatgtgg tgttttcgct aaaacgaatg attggtaaag aaagtgattt acctgaagtg
    11881 aaaagtgagc ctgaaagtgt attacaccac cagcgacaaa gctatattta ccaaaaaaca
    11941 gcggggcaga tttattttcc ttattttgaa agtgttgatt tagcgaataa aattgccagc
    12001 attcattctc cgtcaaatga cattgtaaaa attgaattag tccgtcctga ttcagcattg
    12061 ttggcgcatt tagccagcca atatgcagtt attctgtcta aagaatatgc tttacagctc
    12121 aatgcagatg ataacttagt tcaactggat ttattaccgg taggaacagg cgtatatcaa
    12181 cttgaaagtt atgaaaataa tgattatgtg cgtttaaaac caaatatgaa ttactggggc
    12241 aaaaaagcat atattcaaaa tatggtcgta gatttttcca cagaagcgac cggcaggatg
    12301 gcaaaatttt taaataatga atgtgatgtg gttgcttttc cggaacctag ccaattatca
    12361 gtgttaaata atcggcagct tattagtagt aaaggtgcta atttggttta tttagcattc
    12421 aatatgcaac ggggtattgg gcaggatttg gcattacgcc aacgtattgc acgcggcata
    12481 aatcgcaaac gtattgcaga gaaattattt tatggtacag gtgaagtagc ggataaccta
    12541 ttaccaacag ctttgtggtc gaaaaaaaat aatggaagct acccttatca accacaccaa
    12601 aattcaggtg agcaagcggt tgaaatgcat gacagtatta taaatcggtc tttagatagc
    12661 aaaacagaga ccgaagaagt aaaccaaaaa cagcgcttaa aactgtgggt aattgatgaa
    12721 aaacgagttt ataatcaaca cccattaaaa atggcagaaa tgatacgtgc tgatttagct
    12781 acgcaaaatt tagaggtcga aattcgcgca gtaagtcgag cttatttggt gcaacagctt
    12841 gctaataaaa gtgcggatta tgatttgatt ttaggtggtt ggttagcaaa taatcttgat
    12901 cctaacagtt ttttggaggc cttactcagt tgtaaagctg cggaaacggt gactaattta
    12961 tcaaattggt gcaatgaaga ttttgatttt tggttacaaa cagcccgtct aagtgatgat
    13021 ccggcatcag ctaatttatt gtatgaattt gcacaaaaat tattagaaga gcaattgcct
    13081 attctccctt taatgaatgc taatcgtgta ttagtcataa aagatggagt gaaacaggca
    13141 gatatttccc ctttcggcca ggtaaaatta tcagagttac gtttgggctt ggggcataaa
    13201 aaaggaaact aattatgctg attgtctttt ttcgaaaaat ttttctaacc ttgattacgt
    13261 tgattttttt gtcacttatc agttttaata ttctgttacg agatccatta aaccacttag
    13321 ccgagttagg ctggtttgag gcttattgtt attatgtaaa atctctgcta aatggtgatt
    13381 ttggtattag tttcagtaat ggagaaccgc tcacagcgca aattttacag gtgttcccgg
    13441 ctacaattac gctttgttta tcggctctca ttgtttcttt aattattggt ttgcctcttg
    13501 gtttttttgc ggctactcag caaaaaaata tggttgggcg attattaaat acactaggtt
    13561 cattgagttt agccgtgccg gtattttggc tggcattagt gctaatgtat tacgcttctc
    13621 tcaatcagtg ggaagtgtca gcaattggag aaatccattc gctttatccg aaacagatgg
    13681 taaccggctt tttgctatta gatatttggt tatctgatgt accttataaa ttaaaaatga
    13741 tgcagagtgc tttacatcac ttagctttgc cgacattagt cttggctgtg ccagctacat
    13801 tagaagttat gcatattact caagctagag caggttatgt aatgaaacaa aattacatta
    13861 aaatagcgaa aacgcgtggc tggacaccgt ttagagtttg gagaacgcat attatttgta
    13921 atactttacc tgcattatta cctatgattg cccgtacctt tattttaatt tttgccttcg
    13981 gtatgttaat tgagaacata tttagctggg gaggaattgg acgttggctg ataaatgccc
    14041 ttgctattca agactataat gcgatttcag cgggagtagt tgcaatcggg gtgtttgtgt
    14101 tattagtaga tatggttaca ggctttgtgc gggtgatgtt agacccatca gataaaaagg
    14161 attggtatgg cagttattaa agaacccgag caatttagag aaaccaacgc atttaaggca
    14221 ttttggtttc atttccgaca agataaactt gcacttggca gtttttatct ttttttgcta
    14281 ttactggctc tcatttttgt tggtagtttg cttgctcctt acaattataa tgaacaattt
    14341 gttggtttag aattaatgcc tccctcttgg gacgacaaag gtcaaatcag ccatttttta
    14401 ggcactgacg atttaggacg ggatatttta agccgtatta tgtatggttt ttactacacg
    14461 cttggttccg cactgatgat taccttatta attgcgatta tcggcggtat gatcgggatt
    14521 tatgccgggc tgaaaaaagg acgttcattt tggttgatta gccatttgtt cgataccttt
    14581 ttatttatgc cgattttatt gattgcgatc atcattgcaa ccttaatgga agcgagtttg
    14641 gtcaatgcaa tgttggcgat tttcttagcg atgttgccgc attttatcca taaaatttat
    14701 caagcaaccg aaaaacaact caaaaaagag tacatcatta ccttaaagct agacggtgca
    14761 agctgctggt atttaattcg agaagtgatt attcctaatc ttaccggcgt ggcaattaaa
    14821 gcactttcac atatttttgt gatcgccata ttagatatta gtgcgttaag ttttattatg
    14881 ctgggggcta aaagcccgac ccctgaatgg ggagcgatga ttcgtgaatc catggaactg
    14941 atttatatag ctccttggac ggtgatatta cctggcttag caattatttt tagtattttt
    15001 accgttacaa tacttggtac acgcttaagc gtgatttttg aaaaataccg taaagaatag
    15061 tatttaaata ggatactgac acataacaag cggtcatttt taagtaaaat tttacagatt
    15121 aaggaatagt atggcattac ttgatattcg ccatttaagt attgaaattg atatgccaaa
    15181 aggcagagta aaaatggtgg ataacatcaa cctgactgtt gatgagggcg aaatttgtgg
    15241 cttggtggga gaatctggtt cgggaaaaag cctcatagcc aaagtgattt gcggtatgat
    15301 taaagatgaa tggattgtga gtgcagatcg ctttcgcttt gacgatattg aattactgaa
    15361 actttcgcca gcggaacgcc gaaaattggt aggcgatcat atttcaatgg tattccaaga
    15421 tccgcttact agccttgacc caagccagca aattggtaaa caactgatgc aaaccattca
    15481 atttagaggg aagtggtggc aacgatttgg gtggaaaaag aaaaaagcaa tcgagctact
    15541 acaccgtgtt ggtattcgtg atcatcaaga tattatgaaa agttacccaa gcgatattac
    15601 cgaaggcgaa gctcagaaag tgatgattgc aatggcggtg gcaaatcagc cccgattatt
    15661 ggtggcagat gagccgacta atattatgga atcaaccacg cagttgcagg tttatcgctt
    15721 gctttccagt atgaatcaga atttgggaac ctcaatcttg ctggtgagta atgacatgcg
    15781 tagcattcaa aattgggttg attcttacaa tgtgctttat tgtggacaaa ccgttgaaat
    15841 tgcggataaa gagagcattc ttgaatcgtc ttaccacccc tatactcgag tgttactcaa
    15901 tagttcgccg gacttttctc agcctttagc ctttaaaagt agcttaaata cgctacgagg
    15961 ctcagtcccg atgttacaag aaatgccgat tggttgtcgt ttaggccctc gttgcccttt
    16021 tgcacaaaaa aaatgtatca acaaaccgcc attagtgaaa gtaaaacagc acgagtttgc
    16081 ctgccatttt ccgattaact ttagagaaca aaatttgctt aaaaataaaa cggaaaatac
    16141 gccgtttgtg gtggctgaaa tagcggaaaa agaggcgttt taatgtggtt attattggct
    16201 aagtgtaacg ggtaacatta aagtatctaa tacgaaactc aagggtaaat cgatcaccgc
    16261 aagcaccgcg aatataccgc cttcttgcat tacttggaaa tcttttatta cgccggcata
    16321 aacacggtaa tcctgttcaa ccaagcttag tactgtgcca caagcggtga ggttaaacat
    16381 caaatagagt agaaaaacga gtttacaagc ggtcaatttc atcaaaaaat ctccaaatac
    16441 gcttttattt tacgctattt ttatcgggtt ggcgtaaaat tcgttttaaa aacagctatt
    16501 ttcaggcaga atgtagccga atcgacatta aatatactaa gaggatctta tatgcaaact
    16561 tacaacattg cagtgcttgc cggtgacggc attgggccgg aagtgatggc agaagctatc
    16621 aaagtgcttg aagcgactca acaaaaattt ggctttaaac taaattttaa tcaatataac
    16681 attggtggag cagcgattga tgctcaaggt aaagcgttac ccgaaaatac cttaaaaggc
    16741 tgtgaagagg cagatgcgat tttgtttggc tcggtaggtg gcccgaaatg gacgcattta
    16801 ctacctgatg agcaacctga acgaggttcg ctattaccac tgcgtaaaca tttctcgcta
    16861 ttctgtaatt tacgccctgc tgcattgtat caagggctgg aaaaattctg cccattacgt
    16921 gccgatattg ctgctaaagg ttttgatatg gtggtggtgc gtgaattaac cggcgggatt
    16981 tattttggac agccgaaagg ccgtgatggt gaaggtgcgc aaacgagagc gtttgacacc
    17041 gaagtatact acaaatatga aatcgagcgt attacccgtg tggcgtttga atctgcaatg
    17101 aaacgtaaaa aacacgtaac ctctgtggat aaagccaatg tgttacaaag ctcgatttta
    17161 tggcgtgaaa ccgtcacgga agtagctaaa gagttcccag aagtcacgct tgagcatatg
    17221 tatattgata atgcgacaat gcagctaatc aaagcacctg aatcgttcga tattttatta
    17281 tgctcaaaca tcttcggcga tattatttcc gatgaggctg caatgattac aggttctatg
    17341 ggcatgttgc cttcagccag cctcaatgag caaggtttcg gcttatatga accggcaggc
    17401 ggttcagcac cggatattgc cggtaaaaat attgcgaatc cgattgcgca aattttatca
    17461 gccgcaatga tgttgcgtta tagctttaac ttaggtgatg ctgctgatgc gattgaaaca
    17521 gcgatccaaa aagcccttgc tgatggctac cgtaccgctg atttagctga tgacagcaaa
    17581 ccgctttcta cctcagaaat gggcgatatt attgcgaaaa atattctcgc ttaaggctag
    17641 aagttaaata gcacaagcgg tcattattcg ccaaattttt gcaaattttc cgctaataat
    17701 gaccgcttgt ttattactcg ttagccgtca atctcttcgc ctgtttcttc ccacttaaaa
    17761 ttcaatgccg cagagttgag gcaaaaacgc aaccctgttg gtggtgggcc gtccggaaaa
    17821 acgtgtccca tatgcgaatc acaattccca caacgaattt cgatacgatg acgtcctaaa
    17881 ctgtaatcat ctaagtaacg tagtgacgat tctgaaatcg tttggtaaaa acttggccag
    17941 ccacaaccgg catcaaattt agtatctgag tgaaataaat cgttatggca tctggcacaa
    18001 cgataaattc ctacccgatg ttcattcaaa aattttccgg taaacggacg ttccgtaccg
    18061 tggttgatta aaatatcaac ttgttgttct gtcagggcgt gaataggttt aatcatcagc
    18121 aattctccta agatagtagc gaagtcattg tagctttttt tgacctgaaa atcgttataa
    18181 atttcaaaat ttgacataga tcacaaaaaa tttatctgtt atattggaag ggttcttttg
    18241 gcttgtcagg aaagtgaaaa gatgtgctat aattcaagca tctttagtgt agtacataaa
    18301 gaacaaattt tgtttaactt taatataggt agaaaaatct atggcaatta aaattggtat
    18361 taacggcttt ggccgtatcg gtcgtatcgt tttccgtgca gcacaacacc gtgatgacat
    18421 cgaagtggta ggtatcaacg acttaatcga tgttgattat atggcttata tgctgaaata
    18481 tgattcaact cacggtcgtt ttgacggtac tgttgaagtt aaagacggtc aattagtagt
    18541 taacggtaaa gcgatccgcg taacagctga gcgtgacccg gctaacttaa aatggaatga
    18601 gatcggtgtt gatatcgcag ttgaagcaac aggtttattc ttagatgatg aaactgctcg
    18661 caaacacatc accgcaggtg cgaagaaagt tgttttaacc ggtccgtcta aagatgcaac
    18721 acctatgttc gtaaacggcg taaactttga tacttacgca ggtcaagaca tcgtgtctaa
    18781 cgcttcttgt acaactaact gtttagcacc attagcgaaa gttattcacg aaaaattcgg
    18841 tatcaaagaa ggtttaatga caactgttca cgcaactact gcaacgcaaa aaacagtaga
    18901 tggtccatca gcgaaagact ggcgtggtgg tcgtggcgcg tcacaaaaca tcattccttc
    18961 atcaacaggt gcagcgaaag cagtaggtaa ggtattacct gcattaaacg gtaaattaac
    19021 cggtatggct ttccgtgttc caaccactaa cgtttctgtt gttgatttaa ctgtaaactt
    19081 agaaaaacca gcaacttatg cagaaatctg tgctgaaatc aaacgtgctt cagaaaacga
    19141 aatgaaaggc gtattaggct acacagaaga tgcagttgtt tcaacagact tcaatggtgc
    19201 aactgaaact tcagtatttg atgcagcagc aggtatcgca ttaactgata ctttcgttaa
    19261 attagtatct tggtacgata acgaagttgg ctactcaaac aaagtattag acttagttgc
    19321 tcacgtatat aactacaaag gttaattgct aagttatatt ttaaatatag agccaaattc
    19381 tgaacggaat ttggctcttt tgctgcgaac aataaattga atatagtcgc gttttcccat
    19441 aaaatcaatt tcctacaaac aggaactaag cacagtaagg
//
LOCUS       DANLZD010000036        19267 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.036, whole genome shotgun sequence.
ACCESSION   DANLZD010000036 DANLZD010000000
VERSION     DANLZD010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19267)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19267)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19267
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.036"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..1266)
                     /locus_tag="PXE26_000936"
     CDS             complement(<1..1266)
                     /locus_tag="PXE26_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5593539.1"
                     /translation="MTACHEPKRSIWQQIFTKNMLLCVYTGFCSGLPLFVLIQLMPAW
                     LTSANLDIKTIAAFTLTSLPYTWKFLWAALLDRYFPPFLGRRKSWIFISQIGLLVILA
                     SFGLFNPVQDISIIVTLSVLLAFLSATQDIVVDAFRREILSDNELGLGNSIHVNAYRI
                     AGLIPGGLSLFLADHYAWDTVFLITAAFLVPCLFVTLIIAAEPNHKPIDRSKPFYMAF
                     VDPFKEFFTRKGVAGAIGLILFIFLYKLGDSLATTLQTKFILDMGFTKSHIAGIVKIT
                     SLWCSIGGGIIGGVAMLKLGVNRALWLFGFVQLITILGFAYLASFEHFPTESIGAAEL
                     WKLGLVMAGEYLGVGLGTAAFVAFMARETNPAYTAMQLAIFTSLAALPSKMLGAYTGH
                     LVEMMGYYQFFWLCFFIGIPGMLMLFKVAP"
     gene            1432..5148
                     /gene="metH"
                     /locus_tag="PXE26_000937"
     CDS             1432..5148
                     /gene="metH"
                     /locus_tag="PXE26_000937"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HDL5593540.1"
                     /translation="MNTQHRTELLQNALTERILILDGAMGTMIQKYKLTESDFRGERF
                     KNSTIDLKGNNDLLTLTQPLLISAIHEKYLAAGADIIETNTFSATTIAQADYELESIA
                     YELNLVGAKLARLAADKFSIPEKPRFVAGILGPTNRTCSISPDVNDPGFRNITFMQLV
                     EAYAEATRGLIEGGADLIMIETIFDTLNAKAAVFAIETVFDELGVKLPIMISGTITDA
                     SGRTLSGQTTEAFYNSLRHAKPLTFGLNCALGPKELRPYVEMMSKISETFVSVHPNAG
                     LPNAFGGYDLGAEEMATYIKEWAELGWLNIVGGCCGTTPEHIQAFAEATKGVAPRKLP
                     EIPTAMRLSGLEPLTIDDNSLFVNVGERNNVTGSAKFKKLIKEEKFAEAIEIAISQVE
                     NGAQVIDVNMDEALLDSKKCMTRFLNILATEPEAAKVPIMIDSSKWEVIEAGLQTVQG
                     KPIVNSISLKEGEEKFIHQAKLCRRYGAAVVVMAFDEVGQADTEERKVEICTRAYRIL
                     VDQLGFPPEDIIFDPNIFAIATGIEEHNNYGVDFIQACERIKRDLPHAKISGGVSNVS
                     FSFRGNNVVREAIHAVFLYYAIKAGMDMGIVNAGQLAIYDDLDPELREAIEDAVLNHR
                     HDTTDRLLEISEKYRGVKVESADESAAEWRNLPVAERLKHALVKGITTYIIEDTEEAR
                     QQFASPLEVIEGPLMAGMDVVGDLFGDGKMFLPQVVKSARVMKQSVAYLEPYINATKQ
                     KGSSNGKMVIATVKGDVHDIGKNIVSVVLQCNNFEVIDLGVMVPADVIIETAIREKAD
                     LIGLSGLITPSLDEMEYFLGEMNRLKLDIPVLIGGATTSKEHTAIKLYPKYNYPVVYT
                     ANASRCVTVCATLMNPEAKAEFWEKTKAEYEEIQRKFAVRKPLRNGLSIEEARANRFD
                     GFSGEWADYVPPTPKQTGIIEYKNVPIATLRKFIDWSPFFMLWGLMGGYPDAFDYPEG
                     GEEARRVYNDAQRVLDEFEQNGKLNPSGIMGIFPAVREGDDIAILNEDRTACIGKSYH
                     LRQQSERGKNSKSPYNLCLSDFIADRESGQQDWFGMFAVCAGIEEHYLVESYKAAGDD
                     YNAILLQAVGDRLAEAMAEYLHFELRTKVWGYTVEDEDNGRLIREEYIGIRPAPGYPS
                     CPEHTEKQIIWDLLEVEQRIGMKLTESYAMWPAASVCGWYFTHPTSNYFTLGKIDEDQ
                     VLDYAKRKGWDELTAKKWLSVAMKQDVKSQAENI"
     gene            5256..7259
                     /locus_tag="PXE26_000938"
     CDS             5256..7259
                     /locus_tag="PXE26_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDL5593541.1"
                     /translation="MIEKQNYHLVQLLKDSNYQLTQFSPAYIKKLEESIFLKSGKNGD
                     IPHIQCLVRKKDIKLTPEEAVRQLYLMNLHYEYDYPFERMELEYSVVFGREKKRADIV
                     IFDRDNPNAVYIMVELKKPKLKDGKEQLKSYCNATGAPIGVWTNGESISYYNRRDPNY
                     FKDIPDIPNAQQKLSDLLQERWTIQDLIDNDKIAKQRKSLKDLVIEMEDEVLANAGVD
                     VFEELFQLIFTKLYDEMESTRNKSRYLEFRNYGDTESELKAKIQSLFDRAKNKWEGVF
                     AESAKINLSPSHLAICVSSLEEVKLFNSNLDVVDEAFEYLINKSSKGEKGQYFTPRYV
                     IDMCVKMLDPKPEETVIDTAAGSCGFPVHSIFHVWEKQLKARGLERSHLFTAEEKLPE
                     QTDYVKEKVFAIDFDEKAVRVARTLNLIAGDGQTNVLHLNTLDYERWEDFTKEEEWND
                     VYGEGWKKLRKLRKTKNENRDFQFDVLMANPPFAGDIKETRILARYELGKNSKGKQQS
                     KVGRDILFIERNLDFLKDGGRMAIVLPQGRFNNSSDKYIRDFIAERCRILAVVGLHGN
                     VFKPHTGTKTSVLFVQKWHDELCPKVEDYPIFFATMQKSSKDNSGDKIYVKNADGTLK
                     LDNHQHLIVEHDLFNHDNSTQDGIAEAFIEFAKKEKLSFVGKD"
     gene            7358..8716
                     /locus_tag="PXE26_000939"
     CDS             7358..8716
                     /locus_tag="PXE26_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5593542.1"
                     /translation="MDSTFFLKKYLNHPSFNFPLSLNEVSLIKSGTTPTDRDDNLKEG
                     VVLLKTNDIRNNLLNKYSSVDYFISEDINEKMISSQLKEGDVLVNIVGATLEVVGRVA
                     YVSSTFPKANITQAMSFVRLKSKYNKELLPTYLFAFLQSSYGKIQINRNARPTGQYNL
                     NNEELGAIKVPLIDLETQKQVDKIIKQSNDFVQKSTQSYQEAETLLLENLGLRAFQAD
                     SNPVNVKSLKESFLQTGRLDAEYYQTKYEQYWNLIQSQDYVFIRDEYLHITQKPDWTK
                     PMYQYIEIGDVNIGDGSYQTNWIETQELPANAKTQAQTGDILISTVRPYRGAVTIIGE
                     NDQDLVVSGAFTVLRRKENSVFNNEVLKVLLRSELYKDWLLQFNVGTSYPVIKDNDIL
                     NLPIPKISGEIQEKIAEYIRQSNDLRQQAQNLLAQAKNNVEFEIENNSFNINELEVRG
                     GG"
     gene            8740..9474
                     /locus_tag="PXE26_000940"
     CDS             8740..9474
                     /locus_tag="PXE26_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5593543.1"
                     /translation="MARSSYFARLAEWTLLEHLLVKQPENISVCSFGQSFGTSGRLDA
                     EYYQPKFASLFAQLANFKTMKLGEIVNLQKSVEPGSEAYQTEGIPFVRVSDLSKFGIS
                     QTDKYLHPKDFGNVVRPKKDSILLTKDGTVGIAYRVPQDLNVITSGAIVHLELKTDEV
                     LPDYLALALNSPAVQLQAERDAGGSIIQHWKPSEILDVVIPVLPKNIQQTISDKVQQS
                     FALRVESEVLLEKAKILVEQEIENMR"
     gene            9477..10112
                     /locus_tag="PXE26_000941"
     CDS             9477..10112
                     /locus_tag="PXE26_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593544.1"
                     /translation="MPNHNQDLKKEWFNKARIDYHSPFLMLWLSCNSWYNFHYSLGKD
                     RTHIDRIKSDTSNQNKLYKEFERIFTSGKIKEKTNLWNNIEQLHFALVQAELKYSGSN
                     IPSEYSKFNLENVLIDFPNKTNSVAYQNLVIHNAKTRAGKLKTQYANAHDLGNLVLVE
                     DIQKIFSGLLEIIYQVRCHLVHGSLSPTPENHEVVKYCYLILWDCLKGFCD"
     gene            complement(10380..11117)
                     /locus_tag="PXE26_000942"
     CDS             complement(10380..11117)
                     /locus_tag="PXE26_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5593545.1"
                     /translation="MIKIENLTLAHGIQHLSCYLPKGKLIGIMGANGAGKSSLLKAIA
                     GILRPTSGEIWLENCKLHALSAVERSRQFAYLAQQLNVAWQLSVYDVIALGLPAPLPP
                     EQERQKVRSVAEQLAISHLLDNTYQQLSGGEQTRVQLARCLMKQAPILLADEPIAALD
                     PYYQIDIMQQLKALTPTQTCVVVIHHLPLAYRFCDEIILLKNGNLLVSGNTQAVLNAE
                     NIATAFGVKAEMDWEKREMWGIEKLEV"
     gene            complement(11114..12082)
                     /locus_tag="PXE26_000943"
     CDS             complement(11114..12082)
                     /locus_tag="PXE26_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5593546.1"
                     /translation="MKKLNIVLGSLLLLIVSNAAFYQLSDFALLKNAEGVLSDLRWLV
                     LGEIRLPRIGLAVLTGASLALAGNAMQGVFKNPLASPGLLGSSSGATAVSVFLLYYFS
                     APMGWLLFGGVAGALGAFLLVWLISFRHGTTMMILSGVAVNVLLGAAVTLLLSNAESP
                     WALAELYRWLQGSLVWATAEAVCWALPLILLGIVCLYRERRYLDLLTFGEETAATMGI
                     NLQRSFFTVSIGVALLVGATIPQTGTIGFIGLIAPHLARIWLKKPPSQLYLTSALIGA
                     LLLLIADLAVQYVPFFARIYIGTLTAILGVPFLIWILFTQQWRLAQ"
     gene            12263..12598
                     /locus_tag="PXE26_000944"
     CDS             12263..12598
                     /locus_tag="PXE26_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5593547.1"
                     /translation="MYHIERTEIFDQWLENLKDPLAVVTIARRIERAESGNFGDTKYI
                     AEGISEMRLNVSKGYRLYYAQKGSIIYILLNGGHKGTQQADIDKAKMLWAEIKQHMAE
                     QEKKNERII"
     gene            12582..12905
                     /locus_tag="PXE26_000945"
     CDS             12582..12905
                     /locus_tag="PXE26_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL5593548.1"
                     /translation="MNELYDAPIPQATREKFGIQPFDAAEYLANDELIALYLAETLKD
                     GTDEEFIQALNTVARAKGMNELAKKAGIGRESLYQSLSSSKPRFETIRKIISALNLEL
                     SVVKA"
     gene            complement(12895..14781)
                     /locus_tag="PXE26_000946"
     CDS             complement(12895..14781)
                     /locus_tag="PXE26_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL5593549.1"
                     /translation="MTQLDSVTVYSAYATPINQDKTASSVTVLTEKDFAARNATYVSD
                     VLKTVPGVAIGQQGGRGTLTSLFLRGAESRHTAVVIDGVKVNPINIGNFDFGGLPISN
                     IERIEVLRGEQSALWGSSAMGGVVYITTKSGLYKEKPFNAEVDLGLGSNNTRDASATL
                     SGFHNGFYYALHGDSHRTKGISALSKNHFSYTTETGSEVKTGGASERDGFHRDNGSLR
                     LGYDLGNKGVEVLAAQSSQTVHIDGYNSDVSGEYSRTRNQTFKLGGYWGNEQELLKHQ
                     ANISQFNSKATHFGSNARYSNEKQLNANYQLDVNFDREGEVTQAVSLLTDYAKTRYTS
                     DKYLREKTLSEKSAALEYRLFTEQDHSFSISGRYTDNSQFKNSITGRISGAYRLSPNL
                     CSDRLLLELAEPQQIRAMSPYSQKPLMMLDKLNTDKPTVEPELTALLPYADSTILLNE
                     TFYPQLTARLKQLGFKLVALNDSPQTPEQLFTLILQLGELTQNQAKAEKLVERLRLQK
                     IPLKQPLAETLILSETGMIEPHFPQYQTLLDLLGLSPLKSDLTPQNFSLEKLLLAQPK
                     QLLFLTDNQSYNNQAELLKHPALQKIWQKMSQNPPLVLPMKYTYCFDHGVWQGIQLMH
                     KLTP"
     gene            14811..15611
                     /gene="metF"
                     /locus_tag="PXE26_000947"
     CDS             14811..15611
                     /gene="metF"
                     /locus_tag="PXE26_000947"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HDL5593550.1"
                     /translation="MQQKWRMLWDSIDRLSPLKPKFVSVTYGANSGERDRTHSIVKSI
                     QEKTGIISAPHLTGIDATPEELKVIAKDYWDSGIRRIVALRGDIPKGYDKALFYASDL
                     VALLKSVADFDISVAAYPEVHPEAKSAQADLLNLKRKIDAGANHVITQFFFDVESYLR
                     FRDRCVSIGIDCEIVPGILPVTNFKQLQKMAAVTNVKIPTWMGKMYEGLDDDQTTRNL
                     VAASIAMDMVKVLSREGVNDFHFYTLNRSELTYAMCHTLGVRPDLTTA"
     gene            complement(15660..16820)
                     /locus_tag="PXE26_000948"
     CDS             complement(15660..16820)
                     /locus_tag="PXE26_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593551.1"
                     /translation="MKKSILLILSLFSASLFADVQLSPLPLPQIGKVSQFDLSEQGEL
                     VVINQQKQLWRVTQQAQKLADGVSTEIEPKAQYQRIALADQNGHFMLWTADKIYTSNI
                     PLAPKATMTALNFATIAVTKQNGQFKLARIETQGNQATITATAETEVLPDAHPLQIDF
                     DAETPNQGHIAVLAKPDDFTYQHGVLGDDVEAGEIQFLERHTLNPLAEKLTQQGRVFE
                     ANRWATFTENGKTKIVSVISGDGNGASTVVIGVKDGKLSIEAESEPLSTNRWQSPFIF
                     NRKLYAIQMPHLKGNLVEYSLKGNQLAERFITSGLSNHRYGDHETNLVATTETFALIP
                     QMGYQQVVVLDKTGKITELPTALPAGIKQTKADSNKAYLLLKNGEIWVAEEK"
     gene            complement(16880..17896)
                     /gene="galE"
                     /locus_tag="PXE26_000949"
     CDS             complement(16880..17896)
                     /gene="galE"
                     /locus_tag="PXE26_000949"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HDL5593552.1"
                     /translation="MAILVTGGAGYIGSHTLVELLNENREIVVLDNLSNSSEVSLERV
                     KQITGKSVKFYQGDILDRDILRKIFAENQIESVIHFAGLKAVGESVREPLRYYQNNVT
                     GSIVLVEEMLKANVNTIVFSSSATVYGDPQIIPIVESCPVGGTTNPYGTSKYMVERIL
                     EDTVKAFPQLSAVVLRYFNPVGAHESGLIGEDPNGIPNNLMPFISQVAVGKLPQLSVF
                     GGDYNTHDGTGVRDYIHVVDLALGHLKALDKHQNDAGFHVYNLGTGTGYSVLDMVKAF
                     EAANGITIPYKVVDRRPGDIAVCYSAPQKALEQLGWETERGLEQMMKDTWNWQKNNPN
                     GYKG"
     gene            complement(17984..18145)
                     /locus_tag="PXE26_000950"
     CDS             complement(17984..18145)
                     /locus_tag="PXE26_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HDL5593553.1"
                     /translation="MNETLLNNLVCPVSNEKLEWDKENNRLINPKLNIAYPIKNGIPE
                     LLPEAGVAL"
     gene            complement(18123..19124)
                     /gene="lpxK"
                     /locus_tag="PXE26_000951"
     CDS             complement(18123..19124)
                     /gene="lpxK"
                     /locus_tag="PXE26_000951"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HDL5593554.1"
                     /translation="MKIWQTKSLITWLLSPLSLLFWLISQARKRLYSLNILQSYRSPL
                     PMLVVGNISVGGNGKTPVVVWLVEQLQQRGVKVGVISRGYGGKAKTFPQLVTRESSAE
                     MVGDEPVLIVQRTNVPLAISPNRQQSIELLLNQFEPDIIITDDGLQHYALQRDMEWVV
                     VDGVRRFGNGFVLPAGGLRELPSRLNSVQAVICNGGTPQANEHLMTLEPSDAINLVTN
                     QRKPLSEFTQPCVAIAGIGHPPRFFTMLEKLGIPLAKTQGFADHQAFDKAQLAQFADS
                     QTPLLMTEKDAVKCHDFAQPNWWYVPVSATFSEKSTACLLAPILQKLGKEDERNTTQ"
     gene            complement(19126..>19267)
                     /locus_tag="PXE26_000952"
     CDS             complement(19126..>19267)
                     /locus_tag="PXE26_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL5593555.1"
                     /translation="GVEEIQRLQLIISHKDELLAHKEEIIENQKRELALLRDLVETLK
                     NK"
BASE COUNT         5756 a         3972 c         4260 g         5279 t
ORIGIN      
        1 aggagcaacc ttaaacaaca ttagcattcc cggaatacca ataaagaaac agagccagaa
       61 gaattggtaa tagcccatca tttccactaa atgccctgtg tatgccccta acattttgct
      121 tggtagggca gcaaggctgg tgaaaatggc gagctgcatt gcagtgtaag cgggattagt
      181 ttcacgagcc ataaaggcaa cgaaagccgc tgtgcctaaa cccacgccca gatattcacc
      241 tgccatcact aagcctaatt tccaaagctc ggcagctcca atgctttcgg tagggaaatg
      301 ctcaaaactg gcaaggtaag cgaagcctaa aatagtaatt aattgtacaa atccgaacag
      361 ccataaggct cggttaacgc ccaatttcaa cattgccacg ccaccaataa taccgccgcc
      421 aatgctgcac caaagtgaag ttattttcac aatgccggca atgtgcgatt tagtaaaacc
      481 catatccaaa ataaatttgg tttgtagcgt agttgcaagg gaatcgccta atttatatag
      541 gaaaataaat agaatcagcc caatcgctcc tgccacgcct ttacgggtga aaaactcttt
      601 gaacggatcg acaaacgcca tataaaacgg cttagaacgg tcgattggct tatgattcgg
      661 ctcggcagcg attattagcg taacgaataa gcaaggcact aaaaaagcag cggtaatcag
      721 aaatacggta tcccacgcat agtgatcggc taaaaataat gaaagcccac ccggaatcag
      781 ccctgcaata cgataagcat taacgtggat agagttacct aacccgagtt cgttatccga
      841 taaaatttca cgccgaaagg catccaccac aatgtcttgc gtggcggaaa gaaaagctaa
      901 tagcacagaa agagtaacaa taattgaaat atcttgcact gggttgaaca agccaaagct
      961 ggctaaaatc accaatagcc cgatttgtga aatgaaaatc cagcttttgc gtctgcctaa
     1021 aaaaggtgga aagtagcgat ctaacaatgc agcccacagg aatttccacg tgtagggcaa
     1081 agaggtcagg gtgaaggcgg caatagtttt aatatctaaa ttggcactgg ttagccaagc
     1141 cggcattagc tgaattaaca caaacaacgg taaaccggaa caaaagccgg tgtaaacaca
     1201 aagcaacata tttttagtaa aaatctgttg ccagatagag cgtttgggtt cgtgacaagc
     1261 ggtcatattt ttcctacatt ttgcaaaata aaaaggggaa gaactgagcc aatatagcat
     1321 aattttaaag gcgactctaa ccctttccat ttcgtcacag ataaggtttg acagccttgc
     1381 gacatatttc tattattcct tttaatcaaa ctaaaaaact ggaagcagag tatgaacacg
     1441 cagcatagaa ccgaattact tcaaaatgcc cttaccgaac gcattcttat cttagacggt
     1501 gcgatgggaa cgatgatcca aaaatataaa ctaaccgaat ctgatttccg aggtgaacgt
     1561 tttaaaaaca gtaccatcga tcttaaaggc aataacgacc tactcacact cacccagcca
     1621 ctcctgattt ctgctattca cgagaaatat ttagccgccg gtgcggatat tatcgaaact
     1681 aataccttta gtgcgacgac cattgctcaa gcagattatg aacttgaaag tattgcttat
     1741 gagctgaatc ttgtgggggc aaaacttgcc cgtcttgccg ccgataaatt ctccatccct
     1801 gaaaaacctc gttttgttgc cggtattctt gggccgacta accgtacttg ttcgatttcc
     1861 cctgatgtta atgaccccgg tttccgtaac attaccttta tgcaactggt ggaagcctat
     1921 gccgaggcaa cccgtggttt gattgaaggt ggggcggatc tgattatgat cgaaaccatt
     1981 ttcgataccc tgaatgccaa agcggcggtg tttgcaattg aaacggtgtt tgatgaactg
     2041 ggcgtgaaat tgccgataat gatctccggc accattaccg atgcctcagg gcgaacgctg
     2101 tcagggcaga ccacggaggc gttttataac tcgctccgcc acgccaaacc gctgacgttc
     2161 ggcttgaact gtgcgctcgg gccgaaggaa ctccgccctt atgtagagat gatgtcgaaa
     2221 atcagtgaga cttttgtttc ggttcacccg aatgccggct tgccaaacgc ttttggcggg
     2281 tacgatttag gggcggaaga gatggcgact tacatcaaag agtgggcaga actcggctgg
     2341 ctgaatattg tcggcggctg ttgtggcacc acgccggagc atatccaagc ctttgccgaa
     2401 gcaaccaaag gcgttgcgcc tcgtaaatta cctgaaattc caaccgctat gcgtttgtcg
     2461 ggcttagaac cgctgacgat tgacgataat tcgctgtttg tgaatgtggg cgaacgcaat
     2521 aacgtcaccg gttcggcaaa atttaagaag ctgattaaag aagaaaaatt tgcggaagcg
     2581 attgaaattg ccatcagcca agtggaaaac ggggcgcagg tgattgacgt gaatatggac
     2641 gaggcgttgc tcgattccaa aaaatgtatg acccgtttcc tcaacattct tgctaccgaa
     2701 cctgaggcgg caaaagtgcc gattatgatt gactcctcga aatgggaggt gatcgaggcg
     2761 ggcttgcaaa cggtgcaggg caagccgata gtgaactcca tttcactcaa agagggcgaa
     2821 gagaaattta ttcaccaagc caaactctgc cgccgctatg gggctgcggt ggtggtgatg
     2881 gcatttgacg aagtcgggca agcggatacc gaagaacgca aggtagaaat ttgtacccga
     2941 gcttatcgga ttttggttga tcagctcggc ttcccaccgg aagacattat tttcgacccg
     3001 aacatttttg cgattgccac cggtattgaa gaacacaata actacggcgt ggattttatc
     3061 caagcctgtg agcggattaa acgagacttg ccacacgcca aaatttccgg cggggtgtcg
     3121 aatgtctctt tctctttccg aggcaacaat gtggtgcgtg aggctattca cgccgtgttc
     3181 ctctactatg cgatcaaagc cggaatggat atggggatcg tgaacgcagg gcagttggcg
     3241 atttatgacg acctcgaccc tgaactgcga gaggcgattg aagatgcggt gctgaaccac
     3301 cgtcatgaca ctaccgaccg cctgttggaa atttccgaaa aatatcgggg cgtaaaagta
     3361 gaaagtgccg atgaaagtgc cgccgagtgg cgaaatttac ctgtggcaga gcgtttaaaa
     3421 cacgccctcg taaaaggcat aacgacctac attattgaag ataccgaaga ggctcgccag
     3481 caatttgcct ctccgctgga agtgattgaa gggccgctca tggcgggtat ggacgtggtg
     3541 ggcgacctgt tcggagacgg caaaatgttc ctgccgcaag tggtgaaatc ggctcgggta
     3601 atgaaacagt ccgttgccta tttagagccg tacatcaacg ccaccaagca gaaaggatcg
     3661 agcaacggca aaatggtgat cgccaccgtg aaaggtgatg tacacgacat cggcaaaaac
     3721 atcgttagcg tggtgttgca gtgcaataac tttgaagtga tagacttagg cgtgatggtg
     3781 cctgccgatg taattatcga aactgctatt cgggagaaag ccgatctcat tgggttaagc
     3841 ggactaatta ccccatcgct ggacgaaatg gagtattttt taggtgaaat gaaccgcttg
     3901 aagctcgata ttccggtgct gattggcggc gcaacgacct caaaagagca tacggcgatc
     3961 aaactttatc cgaaatataa ctaccccgta gtctataccg ccaacgcttc acgttgcgta
     4021 accgtctgtg cgaccttgat gaaccctgag gcaaaagccg aattttggga aaaaaccaaa
     4081 gccgaatacg aagaaattca gcgtaaattt gccgttcgca aaccacttcg caacggttta
     4141 tctattgagg aggctcgagc caatcgtttt gacggattta gtggcgaatg ggcagactat
     4201 gtgccgccaa cgccaaaaca gaccggcatt atcgagtaca aaaatgtacc gattgccacc
     4261 ctacgcaaat ttatcgactg gtcgccgttc tttatgctct ggggcttaat gggcggttat
     4321 cctgatgcct ttgattatcc ggaaggcggc gaagaggcac gccgtgtcta taacgatgcc
     4381 caacgggtgc tggacgaatt tgagcaaaac ggcaagctca acccaagtgg gattatgggc
     4441 attttccctg ccgtgcgtga gggcgatgat attgcaattt taaacgaaga tcgcaccgct
     4501 tgtatcggca aatcctacca cctccgccaa caatccgaac gaggcaaaaa cagcaaaagc
     4561 ccgtacaacc tctgtttaag cgattttatc gccgaccgag aaagcggaca acaagactgg
     4621 ttcggaatgt tcgccgtttg tgccggcatt gaagaacact atttagttga aagctacaaa
     4681 gcggcaggcg atgactacaa cgccattttg ctccaagccg ttggcgaccg cttggcagaa
     4741 gcaatggcgg aatacctaca ctttgagcta cgtaccaaag tctggggcta caccgtggaa
     4801 gacgaagaca acggacgctt aatccgtgaa gaatacatcg gcatccgccc tgcgcccggc
     4861 tacccaagct gcccggaaca caccgagaaa cagataattt gggacttgtt agaggtggaa
     4921 caacgcatcg gcatgaaact caccgaaagc tatgccatgt ggccggcagc aagtgtctgc
     4981 ggctggtact tcacccaccc taccagcaac tacttcactc tcggcaagat tgatgaagat
     5041 caggtgttgg attacgccaa acgcaaaggc tgggacgaac tcacggcgaa gaaatggtta
     5101 agtgtggcga tgaaacaaga tgtcaagtcg caggctgaaa acatttaatg tagtggcggg
     5161 ttttaacccg cctgttacaa gcggttggtt ttgagataaa atatgcaaaa tttatctctc
     5221 ttttatgcaa agaagttatc atcgagaaca aaacaatgat tgaaaaacaa aattatcact
     5281 tagtacaact tttaaaagac agtaattatc aattaactca attttctcct gcgtatataa
     5341 aaaaattaga ggaatctatt ttcctcaaat cagggaaaaa tggagatatt cctcatattc
     5401 aatgtcttgt tcgtaaaaag gatattaagc tcacacctga agaagcagta cgccaactct
     5461 atttaatgaa tttgcattat gaatatgatt atccatttga acgaatggaa ttagaatatt
     5521 ctgttgtatt cgggcgtgag aagaaacgag cggatattgt catctttgat agagataatc
     5581 ctaacgctgt ctatattatg gtggagctga aaaagccgaa attaaaagat ggtaaagaac
     5641 aattaaaatc ttattgtaat gcgactggag cacctattgg tgtatggaca aatggcgaaa
     5701 gtatttctta ctataatcgc cgtgatccta attattttaa agatattccc gatattccga
     5761 atgctcaaca aaaactttct gatttattac aagaacgttg gactattcaa gatctgatag
     5821 ataatgacaa aattgccaaa caacgtaaat cattgaaaga tcttgttatt gaaatggaag
     5881 atgaggtact ggcgaatgct ggagttgatg tttttgaaga gttatttcaa cttattttta
     5941 ctaaactcta tgatgaaatg gaaagtacac gcaataaaag tcgttattta gagtttcgta
     6001 actatggtga taccgaaagt gaattaaagg caaaaattca atctctattt gatcgtgcaa
     6061 aaaataaatg ggaaggcgta tttgctgaaa gtgccaaaat caacctttcc ccttcgcatt
     6121 tggcgatttg tgtatcttca ttggaagaag taaagctgtt taattctaac cttgatgtag
     6181 tggatgaagc atttgagtac ttaattaata aatccagtaa aggagagaaa ggacaatact
     6241 ttacgcctcg ttacgtcatt gatatgtgcg taaaaatgct cgatccaaaa cctgaagaaa
     6301 cagtcattga taccgcagca ggaagctgtg gttttccagt tcattctatt tttcacgttt
     6361 gggaaaaaca acttaaagcg agaggattag aacgctcaca cttatttact gctgaagaaa
     6421 aattgcctga acaaacagat tatgtgaaag aaaaagtctt tgcgattgat ttcgatgaaa
     6481 aggcagtacg tgttgctcgt accctaaact taatcgcagg agatgggcaa accaacgtac
     6541 tacatttaaa taccttagat tatgaacgtt gggaagattt tactaaggaa gaagaatgga
     6601 atgatgtata tggagaaggc tggaaaaaat taagaaaatt acgtaaaact aaaaatgaaa
     6661 atcgagattt ccaatttgat gtgctaatgg caaatccgcc ttttgccggt gatattaaag
     6721 aaactcgtat attagctcgc tatgaattag gcaaaaatag caaaggaaaa cagcaatcca
     6781 aagtcggacg agatatttta tttattgaac gcaatttaga tttcttaaaa gacggtggac
     6841 gaatggcgat tgtgctacca caagggcgtt ttaacaattc cagcgataaa tatattcgtg
     6901 attttattgc agagcgttgc cgcattttag ctgttgtggg cttacacgga aatgtgttta
     6961 aaccacatac cggcacaaaa acttccgtac tatttgtgca aaaatggcac gatgaacttt
     7021 gcccgaaagt agaggattac ccgattttct ttgccacaat gcagaaatcc agcaaagata
     7081 attcaggcga taaaatctat gttaaaaacg ctgatggcac actcaaatta gacaaccatc
     7141 aacacctaat tgtggagcac gatctattta atcacgataa tagtacccaa gacggcattg
     7201 cagaagcctt tattgaattt gctaaaaaag aaaagctctc ttttgtggga aaggattaag
     7261 cccatttgac cctgctaaat atcaggcatt gttagatggg ctagaggtga gcgaggttta
     7321 tttgagtaag gttcgttctg caagttattc ggaacgaatg gatagtactt tctttttgaa
     7381 aaaatactta aaccatccga gttttaattt tccattatcg ctgaatgagg tttctctgat
     7441 taaaagtggt acaacaccaa cagatcgaga tgataactta aaagaggggg ttgtcttatt
     7501 aaaaaccaat gatattagga ataatctatt aaataagtac tcttcggtag attattttat
     7561 tagcgaagat atcaatgaga aaatgatttc atcacaactg aaagaagggg atgttttagt
     7621 aaatatcgtt ggtgcaactt tggaggttgt tggtcgggta gcttatgtta gtagcacttt
     7681 tccaaaagca aatattacac aagcaatgtc ttttgtaaga ttaaaatcaa aatataataa
     7741 agaattatta ccaacgtatt tatttgcttt tttacaaagt tcttatggaa aaatccaaat
     7801 taaccggaat gcacgcccaa caggacaata caatctgaat aatgaggagc ttggtgcgat
     7861 taaagtcccc ttaattgatc tagaaacaca aaagcaggta gataaaatca ttaagcaaag
     7921 taatgatttt gtacaaaaat caacacaaag ttaccaagaa gctgaaactt tattattaga
     7981 aaatctcggt ttgagagctt ttcaagctga tagcaatcct gtaaatgtta aatccttaaa
     8041 agagagtttc ttacaaacag gacgattaga tgcagagtat tatcaaacta aatatgagca
     8101 atactggaat ttaattcaat cgcaagatta tgtttttatt cgtgatgaat atttacatat
     8161 cacccaaaaa cctgattgga caaaaccgat gtatcaatat attgaaattg gtgatgttaa
     8221 tattggtgat ggttcatatc aaacgaattg gatagagaca caagaattac ctgctaatgc
     8281 taaaactcaa gcccaaacag gtgatatttt aatttcaacc gttcgccctt atcgtggtgc
     8341 agtaacaatt atcggtgaaa atgatcaaga tttagttgtt agtggtgcgt ttacagtatt
     8401 acgcagaaag gaaaactctg tttttaataa tgaagtttta aaggtgctat tacggtcaga
     8461 actatataaa gattggttac tacaatttaa tgtaggtacg agttatcctg taattaaaga
     8521 taacgatatt ttgaatttac caattcctaa aataagtgga gaaatccaag aaaaaattgc
     8581 tgaatatatc cgccaaagca acgatttaag gcagcaagca caaaatttac tcgctcaagc
     8641 taaaaataat gtagagtttg aaattgaaaa taattcattt aatatcaatg agttagaagt
     8701 gcgggggggg gggtagatcc tgctaagcct tatggtttat tggcgagatc ttcttatttt
     8761 gcacgtttag cagaatggac tttattagaa catttacttg tcaaacagcc tgaaaatatt
     8821 tcggtatgtt cattcggtca atcattcggt acaagcggtc gtttagatgc agaatattac
     8881 caacctaaat ttgcaagctt atttgcacaa ttagccaatt tcaaaacgat gaaattaggt
     8941 gagattgtta atttacaaaa atcggtagaa ccgggctcgg aagcttatca aacagaggga
     9001 ataccctttg tgcgtgtatc ggatttatct aaattcggca tcagccaaac agataaatac
     9061 ttacatccga aagattttgg caatgttgta agacctaaaa aagacagtat attactgact
     9121 aaagacggca cagtcggcat tgcttaccgt gttccgcaag atttgaatgt gattacatca
     9181 ggggcaattg tgcatctaga gcttaaaact gacgaagttt tacccgatta tttggcgtta
     9241 gcattgaatt ctcctgctgt acaattacaa gcggaaagag atgcgggagg ctctattatc
     9301 caacattgga aaccgtctga aattttagat gtagtgattc cggtattacc taaaaatatc
     9361 cagcaaacca ttagcgacaa agtacaacaa agttttgcat tgagagtaga aagtgaagtt
     9421 ttactggaaa aagctaaaat acttgtagaa caagaaatag aaaatatgag gtaataatgc
     9481 ctaatcataa tcaagatttg aaaaaagagt ggtttaataa agcaaggata gattaccact
     9541 ctcctttttt aatgttatgg ctcagttgta atagctggta taacttccat tattccttag
     9601 gtaaggatag aacacatatt gatagaataa aatcggatac cagtaatcaa aacaaacttt
     9661 ataaagagtt tgaaagaata ttcacctctg gaaaaataaa agaaaaaact aatttatgga
     9721 ataatattga gcaacttcat tttgcattag ttcaggcaga gttaaaatat tcaggtagca
     9781 atattccaag tgaatattct aaatttaact tggaaaatgt gcttattgat tttcctaaca
     9841 agacaaattc tgtagcatat cagaatctag ttattcacaa cgcaaaaacg cgtgcaggaa
     9901 aattaaaaac acaatatgca aatgctcacg atttaggcaa tttggtttta gtagaggata
     9961 tccaaaaaat attttccggg ttattagaaa taatttatca agttcgttgc catttggtac
    10021 atggtagctt aagtccaaca cctgaaaacc acgaagttgt taaatattgc tatttgattt
    10081 tgtgggattg tttaaaagga ttttgtgatt agttattgtc aataaagcta caagcggtca
    10141 attctcccaa aactttgcaa atttccccgc aaaactgacc gcttgttctc ctctatccat
    10201 tcacctcaac caacttttct ctctacccct actcaaaatc ggttaaacaa tctgttgagg
    10261 taaatgttgt gtcggaatgg gatttaatct taatgaaact gaaaaaatct tctgccaagc
    10321 aaatttccct aaaattggaa gttcatttcc aatttctcaa aaaatcaccc aaaccggaac
    10381 tacacttcca atttttcaat cccccacatt tcccttttct cccaatccat ttcagctttc
    10441 accccaaaag ccgttgcaat attttcggca tttaagaccg cttgtgtgtt gccgctgacg
    10501 agtaaattgc cgtttttaag cagaatgatt tcatcacaaa aacggtaggc aaggggcaaa
    10561 tgatgaatca ccaccacgca ggtttgtgtt ggagttaggg ctttgagctg ctgcataata
    10621 tcgatttggt agtaggggtc gagggcggca atcggttcat cggcaagcaa gatcggggct
    10681 tgtttcatca aacaacgggc gagttgcact cgggtctgtt caccgccgga gagctgttgg
    10741 taagtgttgt ccagcaggtg agaaatcgcc aattgttcgg caaccgaacg caccttttga
    10801 cgctcttgtt caggcggaag cggtgcgggc aagccgagtg caatcacatc atacaccgaa
    10861 agttgccacg ccacgttgag ctgttgggcg aggtaggcaa attgtcggct cctctcaacg
    10921 gcggaaaggg cgtgcagttt gcaattttcc agccaaattt caccgcttgt cgggcgtaga
    10981 atgccggcaa tcgctttgag caacgaggat ttccctgccc cgtttgcgcc cataatgccg
    11041 atcaatttgc cttttggcag atagcaagag aggtgttgaa taccgtgggc aagggtgaga
    11101 ttttcaatct tgatcattgt gccaatctcc attgctgggt gaataaaatc caaatcaaaa
    11161 acggtacgcc caaaattgcc gtgagcgtgc cgatgtaaat tcgggcaaaa aacggcacat
    11221 attgcaccgc cagatctgca atcagcagta acaacgcccc gattaaagcg gaggtaagat
    11281 aaagctggga cggcggtttt ttcagccaaa tacgggcaag atgaggggct atcaagccga
    11341 taaaaccgat ggtgccggtc tgtggaatcg ttgctccgac caacagcgcc acgccaatgc
    11401 taacggtaaa aaaactgcgt tgcaggttga tgcccattgt tgctgccgtc tcttcgccaa
    11461 aggtgagcag gtcgagataa cgccgttccc gatagaggca gacaatgccg agcaagatca
    11521 acggtaacgc ccaacatact gcctctgcgg ttgcccagac taatgagcct tgcaaccagc
    11581 ggtagagttc cgccaacgcc cacgggcttt cggcattgga aagcagtaaa gtcaccgctg
    11641 ccccgagcaa cacgtttacc gccacgccac ttaaaatcat cattgttgtg ccgtggcgaa
    11701 agctaatcag ccacaccagc aaaaatgccc ccagcgcccc tgccacaccg ccaaacagta
    11761 gccagcccat cggggctgaa aaatagtaga gcagaaatac gctcaccgcc gttgcccccg
    11821 aactgctccc aagcaaaccg gggctggcaa gcggattttt aaacacgccc tgcatcgcat
    11881 tgccggcaag cgcaaggctg gcgcccgtca gcaccgccaa gccaatacgg ggcagtcgaa
    11941 tttcacccag caccagccag cgcagatcgc ttagcacgcc ttccgcattt ttaagcaagg
    12001 caaaatcgct cagttggtaa aaggctgcgt tgctaacaat cagcaacaac aagcttccaa
    12061 gcacaatgtt taatttcttc attcttcttt ctctcatcaa acgtgcaaat tataccatag
    12121 cgccaaagtc aagctgaaaa cgctattttt gcgatcatca tcgaaaaact agcgtttgcc
    12181 gaatgtaacc cacgacaggc tttgctatat tccttcaatc agcctaagtt ttgtatttaa
    12241 aacattacag attgggggta gaatgtacca tattgaacgc actgaaattt tcgaccaatg
    12301 gcttgaaaat ttaaaagatc cacttgctgt ggtgaccatt gcaagacgta ttgaacgtgc
    12361 cgaaagcgga aattttggcg ataccaaata tatcgcagaa ggaatttccg aaatgaggct
    12421 aaacgtcagc aaaggttatc gcctttacta tgcgcaaaaa ggtagcatta tttatatact
    12481 actaaatggc ggacataaag gcacgcaaca agctgatatt gataaagcta aaatgctatg
    12541 ggcagaaatt aaacaacata tggcagaaca ggagaaaaag aatgaacgaa ttatatgacg
    12601 ccccaattcc acaagctact cgtgaaaaat ttggcattca acctttcgat gccgctgaat
    12661 acctcgccaa tgacgagcta atcgcccttt atttggcgga aacattgaaa gacggcacgg
    12721 acgaggagtt tattcaagca ttgaataccg tggcacgagc gaaaggaatg aatgagttag
    12781 cgaaaaaagc agggatcggg cgtgaaagtt tgtatcaaag cctttccagc agtaagcccc
    12841 gttttgagac tatccgcaaa attattagcg cattaaattt ggagttgtcg gtcgttaagg
    12901 cgtaagtttg tgcattaatt gtatcccctg ccaaaccccg tggtcgaaac agtaggtgta
    12961 tttcatcggt aggacaagcg gtggattttg gctcattttt tgccatattt tttgtaatgc
    13021 tgggtgtttg agcagttcgg cttggttgtt atagctttgg ttatcggtga ggaacaataa
    13081 ctgtttgggt tgcgctaaca gcagtttttc tagcgagaaa ttctgtggcg tgaggtcgct
    13141 ttttaatggt gacagaccga gaagatccaa caacgtttga tattgcggaa aatgcggttc
    13201 gatcataccc gtttcgctta gaattaaagt ttcagcaagc ggttgtttta gcggaatttt
    13261 ttgcaaacgt agccgttcca ccagcttttc cgctttggct tgattttggg ttagctcgcc
    13321 cagttgtaaa atcagtgtga aaagctgttc gggtgtttgc ggactgtcgt ttaatgcgac
    13381 taacttaaag ccaagctgtt tcagccgtgc ggtgagttgc ggatagaagg tttcattcag
    13441 caaaatggtg ctgtcggcat agggcaacag ggcggtgagt tcaggctcaa cggtgggctt
    13501 gtccgtgttc agtttatcca acatcatcaa cggcttttgg gaatagggcg acatcgcccg
    13561 aatttgctgt ggttcggcaa gttccagcaa cagacggtcg ctacacaaat ttggcgataa
    13621 acggtaagct cctgaaatac gcccagtgat agaattttta aactgtgaat tatcggtgta
    13681 acggccacta atagaaaaac tgtgatcttg ttcggtaaat aagcgatatt ctagtgccgc
    13741 acttttttcg gataaggttt tttcacgcaa atatttatca gaggtatagc gtgtttttgc
    13801 ataatctgtc agtaaactga ccgcttgtgt cacttctcct tcacggtcaa agtttacatc
    13861 taattgataa ttcgcattaa gttgtttttc gttgctgtag cgagcatttg aaccgaaatg
    13921 tgttgcttta ctattgaatt ggctgatatt tgcttggtgt ttcagcagct cttgttcatt
    13981 tccccaataa ccgcctaatt taaaagtttg attgcgagta cgggaatatt caccgctaac
    14041 gtctgaatta tagccatcaa tatgaacggt ttgggaagat tgagcggcaa gaacttctac
    14101 ccctttgtta ccgaggtcat aacctaaacg taaagagccg ttatcacgat gaaagccatc
    14161 tcgttcgctt gcaccaccgg ttttcacttc tgagcctgtt tctgtggtat agctgaaatg
    14221 gtttttactc agtgcggaaa tgcctttggt acgatggcta tcaccgtgta aggcatagta
    14281 gaaaccgttg tgaaatccgg aaagtgttgc gctggcatca cgggtattat ttgagcctaa
    14341 accaagatcg acctccgcat tgaatggttt ctctttgtat aaaccgcttt tagtggtgat
    14401 ataaactaca ccacccatag cactgcttcc ccaaagggcg gattgctcgc cacgcaacac
    14461 ttcgatacgt tcgatattgc taatcggtaa gccaccaaaa tcgaaatttc caatattaat
    14521 cggattgact tttacaccgt caatcacaac cgcagtatgg cgagattctg cccctcgtaa
    14581 aaataagcta gtaagagtac cacgcccacc ttgttgccca atcgccacgc ccggcacagt
    14641 ctttaacaca tcactcacat aagtcgcatt gcgtgcggca aaatcttttt cggtaagaac
    14701 cgtcacgctg gaagcggttt tgtcttggtt gattggggtt gcataggcgg aatagactgt
    14761 tacggaatca agctgagtca tctcattttg tgcaaaagct gtacttgcta gtgcaacaga
    14821 aatggcgaat gctgtgggat tctattgatc gcctaagtcc tttaaaaccg aaatttgttt
    14881 cggtaactta tggagcaaat tctggtgagc gagatcgtac acacagtatt gtgaaatcaa
    14941 tccaagaaaa aacagggatc atttcagctc cgcacttaac aggcattgat gcaacaccgg
    15001 aagaattaaa ggtaattgcc aaagattatt gggatagtgg tattcgccga attgttgctt
    15061 tgcgtggcga tataccgaaa ggttatgata aagcactatt ttacgcctca gatttagtcg
    15121 ctttattaaa atcagtagca gatttcgata tttccgtggc tgcctaccct gaagttcacc
    15181 ctgaagcaaa atcagcacag gcagatttac ttaacttgaa acgtaaaatc gatgcgggtg
    15241 caaaccacgt tattacgcaa ttcttttttg atgtagagag ttatttacgt tttcgtgatc
    15301 gctgtgtttc tattgggatt gattgtgaaa ttgtgccggg tattctgccg gtgacaaatt
    15361 tcaagcagtt gcaaaaaatg gcagcagtga ctaatgttaa gatcccgact tggatgggta
    15421 aaatgtacga agggttagat gatgatcaaa ccaccagaaa cttagttgca gcaagtattg
    15481 caatggatat ggtgaaagtg ctttctcgtg aaggggtgaa tgatttccac ttctatacct
    15541 taaatcgtag tgaactcact tatgcaatgt gccatacttt aggcgtaaga cctgatttaa
    15601 caactgcata atcgaacatt aaggctgtat agctaaatga gctatacctc cttatagttt
    15661 tacttctctt cagccaccca aatctcgcca ttttttaata ataaataggc tttgttggaa
    15721 tcggctttgg tttgtttaat tccagccggc agggcggttg gcaattcagt gatcttgcct
    15781 gttttatcca acacaacaac ttgttgatag cccatttggg gtatcagtgc gaaagtctct
    15841 gttgtcgcca ctaaattggt ttcgtgatca ccatagcggt gattgcttaa gccggaggta
    15901 ataaaacgtt cagctaattg gtttcctttc aggctgtatt caaccaaatt gccttttaga
    15961 tgtggcattt ggattgcata gagcttgcgg ttaaagataa acggcgattg ccaacggtta
    16021 gtcgacagcg gctcactttc ggcttctatt gataattttc cgtctttaac gccaatcaca
    16081 acagtgctgg ccccattgcc atcgccagag ataacagaaa cgatcttggt ttttccattt
    16141 tctgtgaaag tcgcccagcg gttggcttca aatactcgcc cttgttgggt gagtttttct
    16201 gctaaggggt ttagggtatg gcgttctaga aattgaattt cgcctgcctc tacatcatcg
    16261 cctaatacac cgtgttgata tgtaaaatca tcaggctttg caagtacagc aatatgccct
    16321 tggttaggtg tttcggcatc aaaatcaatt tgcagagggt gagcatcagg caacacctcg
    16381 gtttctgcgg tggcagtaat agtggcttgg tttccttgcg tttcaattct ggctaactta
    16441 aattgtccgt tttgtttggt cacggcaatg gtggcaaaat taagggcggt cattgtagct
    16501 ttcggggcaa ggggaatgtt ggaggtatag attttatcag ccgtccacag cataaaatgc
    16561 ccgttttgat ccgctaacgc aattcgttgg tattgagctt taggttcaat ctcggtggaa
    16621 actccatctg ccagtttttg agcttgttgt gtgactctcc ataattgttt ttgttggtta
    16681 attaccacta attcgccttg ttctgaaagg tcaaattggc ttactttgcc aatttgggga
    16741 agtgggagtg gagaaagctg aacatcagca aacaaagaag cggagaacaa gcttaagatt
    16801 aacagaatag attttttcat tagcgttacc taaaaagaag atttaaatga taaagggaga
    16861 tgttatctcc ctttacgctt tagcctttat aaccattcgg gttatttttt tgccaattcc
    16921 aagtgtcttt catcatttgt tctagcccac gctcggtttc ccaacccagt tgctctaacg
    16981 ctttttgtgg agcggagtag caaacggcaa tatcgcccgg gcggcgatct accactttgt
    17041 atggaatagt aatgccattt gcggcttcaa aggcttttac catatctagc accgaataac
    17101 ctgttcctgt gcctaaattg taaacgtgga aaccggcatc attttggtgc ttgtctaagg
    17161 cttttaagtg accaagtgct aaatctacca cgtggatata atcacgcaca cctgtgccat
    17221 cgtgagtatt ataatcgcca ccaaacaccg ataattgagg taatttgccc acagccactt
    17281 ggctgataaa cggcattaag ttatttggga taccgtttgg atcttcaccg attaaaccgc
    17341 tttcgtgagc ccctaccggg ttgaagtaac gcaatactac cgcacttaat tgtgggaagg
    17401 ctttaacggt atcttcaaga atgcgttcaa ccatatattt ggacgtaccg taagggttgg
    17461 ttgtgccacc gacagggcaa gattccacaa tcgggataat ctgcggatca ccataaacgg
    17521 tcgccgatga actaaacaca atggtattca cattggcttt tagcatctct tctaccaata
    17581 caatcgagcc ggttacattg ttttgatagt aacgtagcgg ttctctgacg ctttcgccta
    17641 cagcttttaa accggcaaag tgaattaccg attcaatctg attttccgca aaaattttgc
    17701 gtaaaatatc acgatctaaa atatcgcctt gatagaattt tacgctcttg ccggtgatct
    17761 gcttcacacg ctcaagtgat acttcagagg aattagaaag attatctaac accacgattt
    17821 cacgattttc gtttaataat tcaactaatg tatgtgaacc gatgtagcct gcaccacctg
    17881 taactaaaat tgccatttta tgttcctcta taaaattaat acgaaccaag gttattgttg
    17941 ctattttacc cgatttaatc aggcttgcta atatttattc agtttataat gccactccgg
    18001 cttccggcag taattccgga atgccgtttt taatcgggta agcaatattg agcttagggt
    18061 taattaatcg gttgttctct ttgtcccatt ctaatttttc attagagaca gggcagacga
    18121 ggttattgag tagtgtttcg ttcatcttct tttcctagtt tttgtagaat cggggctaac
    18181 aaacaagcgg tcgatttttc tgaaaatgtt gcagaaaccg gtacatacca ccaatttggc
    18241 tgtgcaaaat cgtggcattt taccgcatct ttctcggtca ttaataacgg cgtttggcta
    18301 tcagcaaatt gagccagctg agccttatca aaggcttgat gatcggcaaa gccttgagtt
    18361 ttggcaagcg gaatgcctaa tttttctaac atcgtaaaaa agcgtggtgg gtgaccgata
    18421 ccggcaatcg ccacacaggg ttgggtaaat tcgcttaatg gcttgcgttg attggtgact
    18481 aaattaattg catcagacgg ttcaagcgtc attaaatgct cgttagcttg cggtgtgccg
    18541 ccgttgcaaa taaccgcttg cacggagttt aaacggctcg gtaattcacg caatccgccc
    18601 gccggcagca caaaaccgtt accgaaacgc cttacgccat caaccaccac ccattccata
    18661 tctcgctgta gggcatagtg ttgcaagcca tcatcggtga tgatgatgtc cggctcaaac
    18721 tgatttaata gtaattcaat gctttgttgg cggtttggag aaatagccaa aggcacattg
    18781 gttcgctgaa caatcagaac cggttcatca cccaccattt cagcagaact ttctcgggta
    18841 actaattgcg gaaacgtttt cgctttaccg ccatagcctc gagaaatcac gcctactttt
    18901 acgccacgct gttgcagttg ttccaccagc caaacgacca ctggcgtttt gccgttgcct
    18961 ccaaccgaga tattaccgac taccagcata ggcaaaggcg aacggtacga ttgcaaaata
    19021 ttcagagaat ataaccgctt gcgagcttga ctaatcagcc aaaacagcaa cgaaagcggc
    19081 gaaagcagcc aagtgataag ggattttgtt tgccagattt tcatattatt tatttttaag
    19141 tgtttcaact aaatctcgta ataaggctaa ttcacgtttt tggttttcga taatttcttc
    19201 tttatgggct aataattcat ctttgtggga gataataagt tgtaaacgtt gaatttcttc
    19261 tactcca
//
LOCUS       DANLZD010000037        19122 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.037, whole genome shotgun sequence.
ACCESSION   DANLZD010000037 DANLZD010000000
VERSION     DANLZD010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19122)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19122)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19122
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.037"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            52..1002
                     /gene="tal"
                     /locus_tag="PXE26_000953"
     CDS             52..1002
                     /gene="tal"
                     /locus_tag="PXE26_000953"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HDL5593556.1"
                     /translation="MSQLDTLSKMTVIVADTGDIEAIKLYKPKDATTNPSLILSASAL
                     PQYAPLIEEAINYAKAQSSDKDQQLVDAEDKLAVNIGLEILKLVPGRISTEVDARFSY
                     DTEKTIAKARKLIGLYNDAGISNDRILIKIASTWQGIKAAEQLEKEGINCNLTLLFSQ
                     AQARACAEAGVYLISPFVGRILDWYKAHEGKEYAPAEDPGVISVTNIYNYYKQHGYDT
                     IVMGASFRNVGEIIELAGCDRLTISPPLLKELQESDEKLVCKLDYKGEIKPRPEKMTE
                     AEFYWEHNQEPMAVEKLAEGIRKFAIDQEKLEAMLAEKLQ"
     gene            complement(1064..1337)
                     /locus_tag="PXE26_000954"
                     /pseudo
     CDS             complement(1064..1337)
                     /locus_tag="PXE26_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599987.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
     gene            complement(1368..1832)
                     /locus_tag="PXE26_000955"
     CDS             complement(1368..1832)
                     /locus_tag="PXE26_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HDL5593557.1"
                     /translation="MKKLALAVALMSSFALVGCANTDVFSGSVYSGEQAKEARSIAYG
                     TIVSVRDVKIQARSEGVIGTVGGGVLGGVAGNAIGGGTGQAIATAVGAVAGAVIGNQV
                     EQKASQVSSLEMVIRKDDGKEIVVVQKKEDGFVPGKRVRIVGSNSDLNVSLL"
     gene            complement(1853..2452)
                     /locus_tag="PXE26_000956"
     CDS             complement(1853..2452)
                     /locus_tag="PXE26_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL5593558.1"
                     /translation="MDKIIAENAKFFEKMTACFGDLSQFEQKIRQIAEIAGIDLAAYE
                     IDHLAVRMNQTETAEQWKILLLDGATLLKESEVNGRPIGLFALIQAVEFCGQFVKIVE
                     LPFPKNKVYLEEGWEHIELVFPMLDNESSEQWVSRALSHFRLADNSEIKLKISQPQVE
                     GERLPNPSIAISLRNVTFCNPYCLKLHPYDIKSVIMSEN"
     gene            2486..4213
                     /gene="argS"
                     /locus_tag="PXE26_000957"
     CDS             2486..4213
                     /gene="argS"
                     /locus_tag="PXE26_000957"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HDL5593559.1"
                     /translation="MNIQQILSDKIKQAMVASGADSNVEPLVRQSGKPEFGDYQANGA
                     MGAAKKLGMNPREFAQKILENADLNGIADKLEIAGPGFINIFLNPEWLAENTNSSLQA
                     VNFGIKTANPQTIVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLAFLGNNVIRANHVG
                     DWGTQFGMLIAYLEKMENEHASEMELSDLEAFYRAAKEHYDSDEAFAEKARNYVVKLQ
                     SGDKYCLTMWKKLVDITMHHNQENYNRLNVTLTEKDVMGESLYNPMLPEIVADLKAKG
                     LAVEDDGALVVFLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRAL
                     VFSDSRQAQHMQQAWLITRKAGYVPDSFSLEHPFFGMMLGKDGKPFKTRSGGTVKLKD
                     LLDEAVERADKLIAERSTELTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNML
                     TFEGNTAPYMQYAYTRIRSIFARANIDENALSGSIQLNEPKERALAVKLLQFEEALNG
                     VAKEGMPHILCQYLYELAGSFSSFYEACPILNAEETTKNSRLKLAALTAKTLKQGLDL
                     LGIKTVEKM"
     gene            4403..5569
                     /gene="cgtA"
                     /locus_tag="PXE26_000958"
     CDS             4403..5569
                     /gene="cgtA"
                     /locus_tag="PXE26_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Obg family GTPase CgtA"
                     /protein_id="HDL5593560.1"
                     /translation="MKFIDEALIRVEAGDGGNGCVSFRREKFIPKGGPDGGDGGDGGD
                     VYLIADENLNTLIDYRFEKRYAAGRGENGRSAGCTGHRGQDITLRVPVGTRAIDNDTQ
                     EIIGDLTRHGMKMLVAKGGYHGLGNTRFKSSVNRAPRQKTNGTPGEKRDLKLELLLLA
                     DVGMLGLPNAGKSTFIRSVSAAKPKVADYPFTTLVPSLGVARVGADRSFVVADIPGLI
                     EGAADGAGLGIRFLKHLERCRILIHLVDIMPIDESDPAHNISVIESELYQYSEKLAEK
                     PIWLVFNKIDTIGEEEAAERAKDIAEQIGWEGDYYLISAATGQNVQALTRDIMDFIEA
                     NPREVEEENKAPEEVKFKWEDYHNEAMQNAVEEDWDDDWSEEDDEGIEFIYERH"
     gene            5654..6271
                     /locus_tag="PXE26_000959"
     CDS             5654..6271
                     /locus_tag="PXE26_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate 1-dehydrogenase family
                     protein"
                     /protein_id="HDL5593561.1"
                     /translation="MLSSTSCDLFNIPFFQFAQMKKYCPEEIPRIKAEYKTQWEIWKK
                     LHQEVSRQLGQPFAPPHIEKWCNGWQVRAHFFAYYKYEFNRNSAAILSVILNRRRLQV
                     SLDWHCYRADRSQINVHQYNQWWENLDREKFADFEIWHGSESEYDDFRTVSQMSEQAF
                     TLTNEEDFWCIGKNVEKDDLDNIDVVEFIYQTIRALLPLYEKCHQ"
     gene            complement(6318..8276)
                     /locus_tag="PXE26_000960"
     CDS             complement(6318..8276)
                     /locus_tag="PXE26_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HDL5593562.1"
                     /translation="MIAELGNYTLALALAISILLAVLPLWGAEKQNSTLIALARPMTW
                     AMFLALTVSFGSLFYLFAVNDFTVQYVVNNSNSRLPLQYRLSAVWGAHEGSLLLWVWL
                     LSLWSVGVATFTRKMPEDAVARVLGLMGVIGIGFLMFVIFTSNPFDRTFPNFPIDGKE
                     LNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWARWSRPWTMAAWVF
                     LTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALIHSLAVTEKRGTFKAWT
                     VLLAILAFSLCLVGTFLVRSGILVSVHAFASDPTRGLYILAYLVLVVGGSLLLYAFKG
                     SEIKSLDNYERYSRETMLLINNILLMAFLSVVFLGTLLPLIHKQIGLGTISIGAPFFD
                     QMFLILMVPFSFVLGIGPLVKWRRDQVSAIRKPVIIATILMALLGFGLPYLFRNTITV
                     SVVLGTMMSVFIVLLSLYELHQRATHRHSFLSGIFKLSRSHWGMVLAHLGVAMTVFGI
                     AFSQNFSIERDVRMNVGDKAEILDYQFEFKGIKITDGANYQGGTAELEITRNGKYEAT
                     LNAEKRFYTVSRMGMTEAAIDWGFTRDLYAALGEKLEDNSWAVRLYYKPFIRWIWIGG
                     LFMALGGLLCMLDKRYRLRIENKKEVIA"
     gene            complement(8273..8830)
                     /gene="ccmE"
                     /locus_tag="PXE26_000961"
     CDS             complement(8273..8830)
                     /gene="ccmE"
                     /locus_tag="PXE26_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HDL5593563.1"
                     /translation="MNPRRKSRLKVVVSILLGLSVAAGLTLYALSQNIDLFYTPSEIV
                     NGKNDDPKQKPEVGQRIRVGGMVVEDTVKRDDKSLKVVFDLNDIGPSITVEYEGILPD
                     LFREGQGIVAQGVLIEPTRLKATEVLAKHDENYMPPELGDKLKEQHKKSGVSEQDLKG
                     ESETDRKMKAEAEAEKANNVQGESK"
     gene            complement(9016..9213)
                     /gene="ccmD"
                     /locus_tag="PXE26_000962"
     CDS             complement(9016..9213)
                     /gene="ccmD"
                     /locus_tag="PXE26_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HDL5593564.1"
                     /translation="MTFQFESISDFFAMGGYGFYVWLSYGVSFIAMIGLIWLSRREQK
                     AILAQAKKEIVREEKLKQTSQ"
     gene            complement(9228..9965)
                     /locus_tag="PXE26_000963"
     CDS             complement(9228..9965)
                     /locus_tag="PXE26_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease"
                     /protein_id="HDL5593565.1"
                     /translation="MWKWLHPYAKSETQYHLLGKIQPFLGWLSLIMLAAAFVWGLAFA
                     PKDYQQGDSYRIIFIHVPAAIWSMGVYGSMAVAGLVALVWQIRQANLAMISMAPIGLV
                     FAFISLATGAIWGKPMWGTWWVWDARLTSALVLFFLYIGVMALYSAFQDRQTGAKAAA
                     VLSVVGVINLPIIHFSVEWWNTLHQGATITKFDKPSMAVEMLIPLLLAIFGSLIFTAW
                     FSIWRYRIALLKDERNRPWVKQLAKSV"
     gene            complement(10165..10827)
                     /gene="ccmB"
                     /locus_tag="PXE26_000964"
     CDS             complement(10165..10827)
                     /gene="ccmB"
                     /locus_tag="PXE26_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005565617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HDL5593566.1"
                     /translation="MILLTIIQRELTIAFRKPSEILNPLWFFLMVITVFPILMGPNPE
                     LLGKIAGGIAWVAALLSALLSFERLFRDDYLDGSLEQLMLLPLALPQVALAKVIAHWL
                     LTGLPLILLSPIAAILLSLETHVWWALVLTLLLGTPILSCLGAIGVALTVGLRKGGTL
                     LSLLILPLFLPVLIFAAAVLEAATLNMGYSGQLAIIGAILAVTLTFSPFAIAGALRIS
                     LN"
     gene            complement(10824..11465)
                     /gene="ccmA"
                     /locus_tag="PXE26_000965"
     CDS             complement(10824..11465)
                     /gene="ccmA"
                     /locus_tag="PXE26_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HDL5593567.1"
                     /translation="MNQTAQYQLKLNQIACERGETRLFEGCSFTVQSGEWVQIEGHNG
                     IGKTSLLRILAGLFLPAEGEVLWNDIAIQKQRDHYYSELFYLGHYSGVKPELTPWENL
                     RFYQKIQQLPQDDDALWHALTKVSLIGREDLPCSHLSAGQQRRVALAKLWLTNAKLWI
                     LDEPFTAIDKKGVADLIAHIEQHCEQGRLVIFTSHQAAESDKVRIISLDQFKV"
     gene            complement(11609..12319)
                     /gene="hda"
                     /locus_tag="PXE26_000966"
     CDS             complement(11609..12319)
                     /gene="hda"
                     /locus_tag="PXE26_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA regulatory inactivator Hda"
                     /protein_id="HDL5593568.1"
                     /translation="MQLPLPIHQIDEDTFDNFYSQNSEVLLGSLKRNFTDVQQPFFYI
                     WGGKSCGKSHLLKAVSNHFLLNNQTSSYIPLTKANYFSPLVLDNAELLNVICLDDIQA
                     IAGDAEWELAIFNLFNQIREQQGLFNEGQKTLLLISADCPPHQLNIQLPDLRSRLTWG
                     EVYQLNDLTDEQKCQILQLNAHQKGVELSDEVAHFLLKKAGTDLEQLSKILDKLDKAS
                     LQAQRKLTIPFVKEILSL"
     gene            12589..14190
                     /locus_tag="PXE26_000967"
     CDS             12589..14190
                     /locus_tag="PXE26_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5593569.1"
                     /translation="MKNMTKLSLITLALAASSSVFAAPKTFVYCLEASPSALSPVLST
                     DGASFDVNALPIYNKLTDFEDGTTNVIPSLAEKWDISEDGKTYTFHLRKGVKFHDNKE
                     FKPSRELNADDVVFSINRQFDPNHPFHKVSGGNYEYFIGMDMQNIIDKVEKVDDHTVK
                     ISLKVPNAPFLANLAMDFNAVYSAEYAEQSLKAGKPERIDTNPIGSGPFQFVDYQKDA
                     TVRYKAFENYWQGTAKIDRLVFAITPDASVRLAKLQKGECHAMPYPNPADIEDLKKDP
                     NIELMSQSGMNIGYLALNSSIKPLDNQKVRQALNHAVNKQAIVDAVYQGAGQVAKNPI
                     PPTMWSYNEAVQDYDYNPEKAKALLKEAGFENGFDTELWAMPVSRPYNPNARRMAELI
                     QEDWKKVGVNAKIVSYEWGEYLKRLRQGEAATSMIGWTGDNGDPDNFLNTLLSCSAVE
                     AGSNYAKFCHKPFEEVVLGAAQESDKAKRTELYKQAQVIFKEQAPWITIAHSTVYFPV
                     RKEVKGYVMSPFSLHNFYKVDLADK"
     gene            14462..15466
                     /locus_tag="PXE26_000968"
     CDS             14462..15466
                     /locus_tag="PXE26_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5593570.1"
                     /translation="MFSFILKRVLMVIPTFIAITLITFALVHFIPGDPIEIRMGERGL
                     SPEVHQQMMEQLGLNRPLFEQYISYIKGVLHGDLGNSFRNNEPVLKEFFTLFPATVEL
                     AFFALLWSLIFGIILGVIAAVKKESWISHTVTTLSLTGYSMPIFWWGLILILYFSTPL
                     GLPASGRLPSEYWIEAETGFMLIDTWNSDEPGAFLAAIKSLILPSIVLGTIPLAVVTR
                     MTRSSMLEVLGEDYIRTAKAKGLNTTRIVIVHALRNALIPVVTVVGLIVGQLLSGAVL
                     TENIFSWPGIGKWIIDAINSRDYPVLQGSVLIIATIIILVNLTVDLLYGIVNPRIRHS
                     "
     gene            15568..16461
                     /locus_tag="PXE26_000969"
     CDS             15568..16461
                     /locus_tag="PXE26_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5593571.1"
                     /translation="MSGITAVNPPAPKTPLQEFWYYFCQNRGALIGLTFIAIVFVACV
                     FAPWVAPFDPIEQNRSALLLPPAWLEGGNSAHLLGTDDIGRDILSRIIYGSRLSVFIG
                     LVIVLLSCVFGVILGLLAGYYGGTLDIIIMRFVDIMLAIPSLLLTIGVVTILGPSLIN
                     AAIAIAIVSIPSYVRLTRASVLSEKNRDYVTASRVAGASVLRLMFVVILPNCLAPLIV
                     QMTMGISNAILELAALGFLGIGAQPPTPELGTMLAESRGFMQSANWLVTIPGLAILSL
                     VLAFNLMGDGLRDALDPKLKQ"
     gene            16472..17461
                     /gene="dppD"
                     /locus_tag="PXE26_000970"
     CDS             16472..17461
                     /gene="dppD"
                     /locus_tag="PXE26_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HDL5593572.1"
                     /translation="MALLTVDQLSVHFGETKTPFKAVDRISYEVNEGEVLGIVGESGS
                     GKSVSSLAIMGLIDFPGRVMAEKLYFNGNDLLALKPKEKQQIVGADVSMIFQDAMTSL
                     NPSYTVGYQIMEALKVHQGGSKASRRERAIELLTMVGIPDPESRLEVYPHQLSGGMSQ
                     RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIDLLLELQRKENMALILITHDLALVA
                     ESAHRIIVMYAGQVVEEGKAEQIFKAPLHPYTQALLKALPEFAEGKSRLQSLPGVVPG
                     KYDRPQGCLLNPRCPYATEKCRTIEPAMQIINGRQVKCHTPLNAQGEPIRIAV"
     gene            17589..18578
                     /locus_tag="PXE26_000971"
     CDS             17589..18578
                     /locus_tag="PXE26_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5593573.1"
                     /translation="MKENNSLPPFLKAVDLKKYYPVKKGMFAKPKTVKALDGVSFTLE
                     RGKTLAIVGESGCGKSTLGRMLTMIESPTEGELFYNGQNFLVNDKETAQLRRKKIQIV
                     FQNPYSSLNPRKKVGSILEEPLLINTNLSAKERKEKVLEMMAKVGLKPEFYDRYPHMF
                     SGGQRQRIAIARGLMLQPDIVVADEPVSALDVSVRAQVLNLMMDLQEEMGLSYVFISH
                     DLSVVEHIADEVMVMYLGRCVEQGDTKTIFSNPRHPYTQALLSATPRLNPEQRRERIK
                     LTGELPSPLNPPKGCAFNARCRFATDRCYVERPELKTYQDGTRIACFVVEENN"
     gene            complement(18812..>19122)
                     /locus_tag="PXE26_000972"
     CDS             complement(18812..>19122)
                     /locus_tag="PXE26_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248476.1"
                     /note="Bacteria have multiple sigma factors which are
                     active under specific conditions; the sigma factor binds
                     with the catalytic core of RNA polymerase to produce the
                     holoenzyme and directs bacterial core RNA polymerase to
                     specific promoter elements to initiate transcription;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RNA polymerase subunit sigma"
                     /protein_id="HDL5593574.1"
                     /translation="ADDDEENHFFDNYGHWKEEYYPSSWQEEAVYSKEFWILFEVCLS
                     NLPAKQARVFMMREYLEATSDEICRVVNITSDNLYTLIYRARLQLQQCLSRKLTERNR
                     "
BASE COUNT         5766 a         4199 c         3973 g         5184 t
ORIGIN      
        1 tatagtaact tttactacta tttatttcac aatcaaaaaa ggaatcagac tatgagccaa
       61 cttgacacct taagcaaaat gaccgttatc gttgctgaca ctggtgatat tgaagcaatc
      121 aaactttata agccaaaaga tgcaacaaca aacccgtctt taattttaag tgcatcggca
      181 ttaccgcaat atgctccatt aattgaagaa gcgattaatt acgcaaaagc acaaagtagc
      241 gataaagatc aacagttagt tgatgctgaa gataaattag cggtaaatat tggtttagaa
      301 atcttaaaac ttgtacctgg acgtatttct acagaagttg atgctcgttt ttcttatgat
      361 actgaaaaaa ctatcgctaa agcacgtaaa ttaattggat tatataacga tgcaggcatc
      421 agtaatgatc gcattttaat taaaattgcc tctacttggc aaggtataaa ggcagcagaa
      481 cagttagaaa aagaaggcat taactgtaac ttaacgttat tattctctca agctcaagct
      541 cgtgcgtgtg cagaagcagg ggtttactta atctctccat tcgttggtcg tattttagac
      601 tggtacaaag ctcacgaagg taaagaatat gctccagctg aagatccagg tgtaatttca
      661 gtaaccaata tatacaatta ctacaaacaa cacggttatg acactattgt aatgggtgca
      721 agtttccgta atgtaggaga gatcattgag ttagctggtt gcgaccgttt aaccatctca
      781 ccaccgttat taaaagagct acaagagagc gatgaaaaat tagtttgcaa gctagattac
      841 aaaggtgaaa tcaagcctcg tccagaaaaa atgacagaag cagaattcta ctgggagcat
      901 aaccaagagc caatggcagt agaaaaatta gctgaaggca ttcgtaaatt tgcgattgac
      961 caagagaagt tagaagcaat gcttgctgaa aaacttcaat agacaacgca taaaaaaacc
     1021 ggcattaacg ataattaatg ccggttttaa tttctataaa tgattattta aactcataac
     1081 gtctaatcgt ttttagatcg ctatcttcat ttttaatttc atcggcaaga tgaacacgag
     1141 caccaaccgc tgcatgtgca tcatactcac gagttagagt cacagtttca ccattatctc
     1201 gttgaactgt aagttcaaca acatcgtttg atactgcttt gctagataaa tgttgcatta
     1261 cctttatcag aataaacatc tgcagtacaa gctgctaaca taagtgaagc taatacagct
     1321 aaagaaagtt ttttcattaa taatatatcc tctaggaaaa actaaaatta aagcagagaa
     1381 acattcaggt ctgaattaga ccctacgatt ctcacacgtt tgccaggcac aaaaccgtct
     1441 tctttctttt gaacgaccac gatttcttta ccatcatctt tgcgaataac catttccaat
     1501 gaagaaactt gactcgcttt ttgttctact tgattaccaa ttaccgcacc ggcaactgcc
     1561 cccactgcgg ttgcaatcgc ttgccctgta ccaccgccaa tcgcattacc ggcaacgcca
     1621 cctaatacac caccgccgac agtaccgatc acaccttcac tgcgtgcttg aattttcaca
     1681 tcacgcactg aaacaatagt gccataagcg atagaacgag cttcttttgc ctgctcaccg
     1741 gaataaacgc ttccgctaaa cacgtctgta tttgcacagc caactaaagc aaaacttgac
     1801 attaatgcga cagctaaagc taattttttc attttgtttg ttctccgaaa cgttaatttt
     1861 ctgacataat tacacttttt atatcataag ggtggagctt tagacaataa ggattacaaa
     1921 aagttacatt tctcaagctg atcgcaatgc ttggatttgg caatctctcc ccttctacct
     1981 gaggttggct gatttttaat ttaatctcag aattatcagc aagtctaaag tgcgacaatg
     2041 cccttgacac ccattgttcc gaactttcgt tgtctaacat cggaaaaacc agctcaatat
     2101 gttcccagcc ttcttctaaa taaaccttat ttttcggaaa aggcaactcg acaatcttta
     2161 caaattgtcc gcaaaattca accgcttgta ttaatgcaaa cagccctatc ggtctgccgt
     2221 ttacctcgct ctctttaagt aaggttgccc catcaagcaa aaggatcttc cactgttctg
     2281 cggtttcggt ttggttcatt cttaccgcaa gatgatcgat ttcatacgct gctaaatcaa
     2341 tgccggcgat ttcagcaatt tgtcggattt tctgttcaaa ttgcgataaa tcgccaaaac
     2401 aagcggtcat tttctcgaaa aattttgcat tttctgctat aattttgtcc atttttttgt
     2461 aaatagaatt taaataggtt aaacagtgaa tattcaacaa attttatcag ataaaattaa
     2521 acaggcaatg gtagcaagcg gtgcagacag caatgtcgag cctttagtcc gccaatcggg
     2581 caagccggaa tttggcgatt accaagccaa tggtgcgatg ggtgcagcga aaaaattggg
     2641 gatgaatccg cgtgaatttg cccaaaaaat cttagagaat gccgatttga acggtattgc
     2701 cgataaatta gaaattgccg gtccgggctt tatcaacatt ttcttaaacc cagaatggct
     2761 ggcggagaac actaacagtt cattgcaagc ggtcaatttt ggcataaaaa ctgcaaatcc
     2821 gcagacgatt gtgatcgact actcctcgcc aaacgtagca aaagaaatgc acgtcgggca
     2881 tttgcgttcc accattattg gcgatgcggt agttcgtacc cttgcgtttt taggcaataa
     2941 tgtgattcgt gccaaccacg ttggcgactg gggtactcaa ttcggtatgc tgatcgctta
     3001 ccttgaaaaa atggaaaatg agcacgccag cgaaatggag ctaagcgatt tagaagcctt
     3061 ctatcgtgcg gcaaaagagc attatgattc agacgaagca ttcgccgaaa aagcccgtaa
     3121 ctatgtggtg aaattacaaa gcggcgataa atattgctta acaatgtgga aaaaattggt
     3181 cgatattaca atgcaccaca atcaagagaa ctacaatcgc ttaaatgtta cgctcaccga
     3241 aaaagatgta atgggcgaaa gcctctacaa tccaatgttg cctgaaattg tggcggattt
     3301 aaaagccaaa ggcttagcgg tggaagatga cggtgcttta gtggttttcc tcgatgaatt
     3361 taaaaataaa gatggcgacc caatgggcgt aatcgtgcag aaaaaagatg gcggtttctt
     3421 atataccact accgatattg cggcagcaaa atatcgctac gagaccttaa aagctgaccg
     3481 agccttagtc ttttctgaca gccgccaagc tcaacatatg caacaggcat ggctcattac
     3541 ccgcaaagcg ggctatgtgc cggacagttt cagccttgaa cacccgttct tcggaatgat
     3601 gctaggcaaa gacggcaaac cgttcaaaac ccgtagcggt ggcacagtca aactcaaaga
     3661 tttattagat gaagcggtag agcgtgccga taaactgatt gccgaacgtt caaccgagct
     3721 aactgcggaa gaaaaagccg ccgtggttga agcggttgcg attggttcgg tgaaatattc
     3781 tgacttatcg aaaaaccgca ccaccgatta tgtgttcgat tgggacaata tgctgacctt
     3841 tgaaggcaat accgccccgt atatgcagta tgcctacacc cgcattcgct ccatctttgc
     3901 ccgtgcgaac attgacgaaa atgcattgag cggttcaatc caactcaatg agccaaaaga
     3961 gcgtgcatta gcagtgaaac tattgcaatt tgaagaggca ttaaacggcg tggcaaaaga
     4021 aggtatgcca catattttat gccaatattt atacgagctt gcaggtagtt tctccagttt
     4081 ctacgaggct tgcccgattc tcaatgccga agaaacaacc aaaaacagcc gtttgaaact
     4141 cgctgcctta acggcgaaaa ccttgaaaca agggttggat ttactcggta ttaaaactgt
     4201 agagaagatg taatacaaac tctctcccct tgtgggagag agaccgctta tgagcgttca
     4261 gcgaaataag cagagagagg ggacaagcgg taatttttat taaaattttt acacattttc
     4321 ccctctccct gatttttctt ctgaacgaag aaaaatctgt ccctctccca caaggggaga
     4381 gggcatataa aaggaaacaa atatgaaatt tattgacgaa gccctgattc gtgtagaagc
     4441 aggcgatggc ggtaatggct gtgtgagctt ccgccgtgaa aaatttatcc cgaaaggcgg
     4501 acctgacggt ggtgatggtg gcgatggtgg tgatgtgtat ttaattgccg atgaaaacct
     4561 aaacaccctt atcgactacc gctttgaaaa acgttatgcc gctgggcgtg gcgagaatgg
     4621 tcgcagtgcc ggctgtaccg gacatcgtgg gcaagatatt accctacgag tgccggttgg
     4681 aacccgtgcg attgataacg acacccaaga aattattggc gatttaaccc gccacggaat
     4741 gaaaatgctg gtggcaaaag gtggttatca cggtttaggt aatacccgct ttaaatcctc
     4801 agtaaaccga gctccacgcc aaaaaaccaa cggtacgcct ggcgaaaaac gtgatttgaa
     4861 attagagctg ttactgcttg ccgatgtggg aatgcttggc ttaccaaacg ccggtaaatc
     4921 cacctttatc cgcagtgtct ctgctgccaa accaaaagtg gcggattacc cgttcacgac
     4981 gctggtgcca agtttagggg tagcccgtgt gggggccgac cgcagttttg tggttgccga
     5041 tattccgggg ttaattgaag gtgcagcaga tggtgcaggg ctggggattc gtttcctaaa
     5101 acacttggaa cgttgccgta ttttgattca cttagtcgat attatgccga ttgatgaaag
     5161 cgatccggct cataatattt cggtgattga atccgagctt taccaataca gcgaaaaact
     5221 cgccgaaaaa ccgatctggt tggtgtttaa taaaattgac accatcggcg aagaagaagc
     5281 tgctgagcga gcaaaagaca ttgccgagca aatcggctgg gaaggcgatt actacttgat
     5341 ttctgccgct accggtcaaa acgtgcaagc tctcactcgt gatattatgg actttattga
     5401 agccaaccca cgcgaagtgg aggaagaaaa taaagcacct gaagaagtca aattcaaatg
     5461 ggaagactac cacaacgaag caatgcaaaa tgcggtagaa gaagattggg acgacgattg
     5521 gagcgaagaa gatgacgaag gcatagagtt tatttacgaa cgccattagt gcaataatac
     5581 aagcggttgt ttttaaacgg agatttgcaa atttccggag aaaaacaacc gcttgtaggt
     5641 ttaaggagag tttatgctta gctcaacatc gtgcgattta ttcaatattc cgttcttcca
     5701 atttgctcag atgaagaaat attgccctga ggagatccct cgaattaagg cggaatataa
     5761 aactcaatgg gaaatttgga aaaagctaca tcaggaagtt tctcgtcagc ttgggcagcc
     5821 gtttgctcca ccacatattg agaagtggtg caacggttgg caagttcgag cccatttttt
     5881 tgcctattac aagtatgaat ttaatcgaaa ttctgcggct attctttccg tgattttaaa
     5941 tcgtcgccgt ttgcaagtga gccttgattg gcattgttat cgagccgatc gctcgcaaat
     6001 taacgtgcat caatacaatc aatggtggga aaatttagat cgggaaaagt ttgctgattt
     6061 tgagatttgg cacggaagtg agagtgaata tgatgatttt agaaccgtta gtcagatgtc
     6121 agagcaagcg ttcaccctaa ctaacgagga agatttttgg tgtatcggca aaaatgtgga
     6181 aaaggacgat ttggataaca ttgatgtagt agaatttatc taccaaacca ttcgggcatt
     6241 attgccactt tatgagaaat gtcatcaata aacactaaaa agagaggcga acatcatttg
     6301 ttcgcccctt tcaaaattta agctatcact tcttttttat tttcaatgcg taaacggtag
     6361 cgtttatcca acatacagag taaaccaccg agagccataa acagcccgcc aatccaaatc
     6421 cagcgaatga acggtttata atacaaacgc actgcccaag agttatcttc taatttttcg
     6481 ccaagtgcag cgtataaatc tcgggtaaag ccccagtcaa tcgccgcttc ggtcattccc
     6541 attcggctca ccgtatagaa acgtttttca gcattaagtg tggcttcata tttaccgttt
     6601 cgagtaattt caagctcggc agtgccgcct tgatagtttg ccccatcggt gattttaata
     6661 cctttaaatt caaattggta atctaaaatc tcagctttat cacccacatt cattctgaca
     6721 tctcgttcaa tgctgaaatt ttggctaaat gcaatgccga acactgtcat cgcaacccct
     6781 aagtgagcca gcaccattcc ccaatgtgaa cgggacagtt tgaaaatgcc acttaagaac
     6841 gagtggcgat gggttgcacg ttggtgtagc tcatacaggc taagtaacac aataaagaca
     6901 gacatcatcg tgcctaacac cacactcacg gtaatggtgt tacggaataa gtatggcaat
     6961 ccgaatccaa gcaatgccat taaaatagtt gcaataatta ccggtttacg aatagcagaa
     7021 acttggtctc tacgccattt cactaatggt ccaatcccta atacaaatga gaaaggaacc
     7081 attaaaatta agaacatttg gtcaaaaaat ggtgccccga ttgaaatcgt ccctaagccg
     7141 atttgtttgt gaattaatgg cagtaaggtc cctaaaaaca ccaccgataa aaatgccatt
     7201 aataaaatat tattaatgag tagcatcgtt tctcttgaat agcgttcata gttatctaag
     7261 cttttaattt ccgagccttt gaatgcatac agcagtaaag aaccacctac tactaacacc
     7321 aagtaagcca agatgtataa accacgagtt ggatctgaag caaaggcgtg aactgacacc
     7381 aaaatgcctg aacgcactaa gaaagtcccc actaaacaga gcgagaaagc aagaatcgct
     7441 aataagaccg tccacgcttt aaatgtgcct cgtttttcag tcactgctaa tgaatgaatc
     7501 agtgctgttc ctgcgagcca cggcattaat gaggcattct cgacaggatc ccagaaccac
     7561 cagccacccc aaccaagttc gtagtatgcc caccaagaac caagcacgat accgagcgtt
     7621 aaaaataccc acgctgccat tgtccacgga cgagaccatc ttgcccacgc agtatctaaa
     7681 cgccctgtca tcagtgaggc aatcgcaaaa gcaaaggcaa cggagaaacc cacatagccc
     7741 atataaagca acggtgggtg gaagatcaag cccacatctt gcagcattgg gtttaattct
     7801 ttgccatcaa tcggaaaatt tgggaaagtt ctatcaaacg ggttggaggt aaaaatcaca
     7861 aacatcaaaa agccgatgcc aatgaccccc attagtccta acactcgagc aacggcatct
     7921 tccggcattt tacgggtaaa ggttgctacc ccgacagacc aaagcgacaa caaccaaacc
     7981 caaagcaata atgagccttc gtgagcgccc cacaccgcag ataaacgata ttgcaacggt
     8041 aaacggctat tggagttgtt caccacatat tgcacggtaa aatcattcac cgcaaacaga
     8101 taaaacagcg aaccaaaaga gacagtcaat gccaaaaaca ttgcccaagt catcgggcgg
     8161 gcaagagcaa ttaaggtgct attttgcttt tctgctcccc aaagcggtaa aactgccaac
     8221 aagatagaaa tcgctagggc taatgccaac gtataattgc ctaattctgc aatcatttgc
     8281 tttccccttg cacattgttg gctttttctg cttccgcctc ggctttcatt ttgcggtcgg
     8341 tttccgattc acctttcaga tcttgttcag acacacctga ttttttatgc tgttctttta
     8401 atttatcgcc taattccggt ggcatatagt tttcatcgtg ttttgccaga acttccgtag
     8461 cttttaaacg ggttggttca atcaacacgc cttgtgccac aatgccttgc ccttcacgga
     8521 ataaatccgg caaaattcct tcgtattcca cggtaatcga aggcccgata tcattgagat
     8581 caaatactac ttttaaactt ttatcatcac gctttaccgt atcttccact accattccgc
     8641 ccacacggat acgctgacca acttcaggct tttgtttcgg atcatcattt ttaccgttta
     8701 caatttcaga cggcgtgtaa aacagatcga tattttggct taacgcataa agtgtcaagc
     8761 ctgctgcgac agaaagccca agtaatatcg aaaccaccac ttttaatctt gatttgcgtc
     8821 ttggattcat cgtaatcacc cttcaaaata aatgcaaaat tgcataaaaa ctcaaaaata
     8881 aattagtgta agaatagcaa aaaaccgcaa aacattcccg atatttcaag gaagttttgc
     8941 gatttctcaa atcaaacacc tataaagaag tatgaggcta tcgttgcaaa aaataaagtt
     9001 atttcgaccg cttgtttatt gtgatgtttg ctttaatttt tcttcacgca caatctcttt
     9061 ttttgcttga gccaaaatcg ctttctgttc acggcgacta agccaaatca gcccaatcat
     9121 tgcaatgaaa ctgacaccat aagagagcca tacataaaag ccgtagccac ccattgcaaa
     9181 aaaatcgctg attgattcaa attgaaatgt cattgttctc tcctactcta aactgatttt
     9241 gccagttgtt ttacccaagg gcgattacgt tcgtccttta ataaggcaat gcgataacgc
     9301 caaatgctaa accaagcggt aaaaattaag ctaccgaaaa tcgccaatag caacggaatt
     9361 aacatttcca ccgccataga cggtttatcg aatttagtga tggtcgcccc ttgatgcaag
     9421 gtgttccacc attccaccga aaagtgaata atcggcaagt taatcacgcc aacaactgac
     9481 agcacagccg ccgctttggc tccggtttgt ctgtcttgga atgcggaata aagagccatc
     9541 acgccgatat aaaggaaaaa taacactaaa gcggaggtta aacgagcgtc ccacacccac
     9601 caagtccccc acattggttt gccccaaatt gcaccggttg caagtgaaat aaaagcgaat
     9661 actaagccga taggtgccat tgaaatcatc gccaagttag cttggcgaat ttgccaaacc
     9721 aatgccacca agcctgccac cgccattgag ccatatacgc ccatcgacca aattgctgcc
     9781 ggcacgtgaa taaagataat gcgatagcta tcgccctgtt ggtaatcttt cggggcaaaa
     9841 gccaagcccc aaacaaaagc agccgctaac ataatcaaac ttagccaacc taaaaacggt
     9901 tggattttcc ctagcaaatg gtactgcgtt tccgattttg cataagggtg tagccatttc
     9961 cacatatatt tctccaaagt aaataattcc cctcacccgt ttacaggaga gggacgattt
    10021 gagcttcgtt cagaagcgaa aatcagggag aggggaaaaa gttgcaaatt ttcataataa
    10081 ttcgaccgct tcccctctct ctgaaaaaca cctctgaacg aggtgttttt cggtctctct
    10141 ccctcaagag ggagagagga agttttagtt caaactaatt cttaatgcac cggcaatcgc
    10201 aaacggcgaa aaagttaaag taaccgctaa aattgctccg ataatcgcca gttgtccgct
    10261 ataacccata tttaaggtgg cggcttctaa taccgcagcg gcaaaaatca gtaccggtaa
    10321 gaataacggg aggattaata aactcagcaa cgtaccgccc ttgcgtaagc ccacagtgag
    10381 tgccacgcca atcgctccta agcagcttaa aatcggggtg ccgagtaata atgtcagcac
    10441 taacgcccac caaacgtggg tttcaagtga aagcaaaatg gcagcaatcg gtgaaagtaa
    10501 aatcaacggt aagccggtca gcagccagtg agcaatcact ttcgctaacg caacctgcgg
    10561 caaggcaagc ggcagtaaca ttaattgctc gagcgaaccg tctaaataat catcacggaa
    10621 taaccgctca aaggaaagca atgcagaaag caaagcagct acccacgcaa tgccgccggc
    10681 aattttgcct aataattcgg ggttaggtcc cattaaaatc gggaatacgg taatcaccat
    10741 taaaaaaaac cacaacggat ttaaaatctc cgagggttta cgaaaggcaa tggtgagttc
    10801 ccgctgaata atagtcaata aaatcatact ttaaattgat ctaacgaaat aatacgcact
    10861 ttgtcgcttt cagcagcctg gtggctggta aaaatcacta atctgccttg ctcgcaatgc
    10921 tgttcaatat gagcaatcag atccgccaca ccctttttat caatagcggt aaagggttca
    10981 tctaaaatcc aaagtttggc gttagtgagc cacaattttg ccaacgccac acggcgttgc
    11041 tgaccggctg acaaatgcga acaaggcaaa tcttcacgcc cgatgagcga cactttcgtc
    11101 aatgcgtgcc aaagggcatc atcatcttgc ggtaactgtt ggattttctg gtagaaacgc
    11161 aaattttccc acggtgttaa ttccggtttt acccccgaat aatgccctaa ataaaatagt
    11221 tcagaataat agtgatcacg ctgtttttga attgcaatat cgttccacag cacctcacct
    11281 tccgcaggta aaaaaagccc ggctaaaata cgtaacaggc tggtttttcc aatgccgtta
    11341 tgcccttcaa tctgcaccca ttcaccactt tgcacggtaa aactgcaccc ttcaaacaaa
    11401 cgggtttcgc cccgttcgca ggcaatctga ttaagtttaa gctgatattg ggccgtttgg
    11461 ttcattattt ttcatctggt tgaacatttt agccgaagtg tatcataagc ctttgattta
    11521 acgtagcaaa taaattactt ctttagaggt agcaagcggt caaattttca aaaagttttg
    11581 caaattttga taagaatcaa accgcttgtt acagagagag gatttccttc acaaaaggaa
    11641 tggttaattt acgctgggct tggagagacg ctttatccaa cttatccaat attttagaga
    11701 gttgctctaa atccgttccc gcttttttta acagaaaatg agcgacctca tcggacaatt
    11761 ccaccccttt ttggtgagca tttaactgta aaatttggca tttttgttca tcggttaaat
    11821 cgtttagctg gtacacttcg ccccaagtta agcgggaacg taaatccggc aattggatat
    11881 tgagttggtg tggtgggcaa tcggcactga ttaacagcaa ggttttttgc ccttcgttaa
    11941 acaagccttg ttgttctcga atttggttaa acaggttaaa aatagcaagt tcccattcag
    12001 catctcctgc aatcgcttga atatcatcta ggcaaatcac attcagcagt tcggcattat
    12061 ctaacaccaa cggcgagaaa taattggctt tagtgagcgg aatataacta gaagtttggt
    12121 tatttaaaag aaagtggtta cttactgctt tcaacaaatg acttttaccg cagctcttac
    12181 cgccccaaat gtaaaaaaac ggctgttgaa catccgtaaa atttcgtttg agggatccaa
    12241 gcaacacttc gctgttttgg ctataaaaat tgtcgaaagt gtcttcatca atttgatgaa
    12301 tgggtagagg taactgcaag gctttcctta aatctctaag tttgatattt ttctaagaat
    12361 agcggaaaag caggggtttg agaagtaaaa atagtgagaa aatatccact catttttcta
    12421 atgaagagat gacaagcggt tgaatttcca cataattttg tcaatctgac cgaaaaccca
    12481 ccgttttgtg ttaaaaaaag attgcagtta gctcaaaaaa ttgtatattc aaagctttct
    12541 acttaaaaag tagagtaaaa caactattac aaacacaacg gagtgaatat gaaaaacatg
    12601 actaaattat cgctaataac attagcgcta gccgcttcaa gtagcgtctt tgctgcaccg
    12661 aaaacctttg tttactgctt agaggcttcg ccttcagcat taagcccagt gctatcaaca
    12721 gacggtgcaa gctttgatgt gaacgccctc ccgatttata acaaattaac cgactttgaa
    12781 gacggtacaa ctaatgttat tccctctctt gccgaaaaat gggacatttc ggaagacggc
    12841 aaaacttaca ccttccacct gcgtaaaggc gtaaaattcc acgacaataa agaatttaaa
    12901 ccaagccgtg agttaaatgc agacgatgta gtgttctcca ttaaccgtca gtttgatcca
    12961 aaccatccat tccacaaagt ttccggcggt aactacgaat actttatcgg tatggatatg
    13021 caaaatatta tcgataaagt ggaaaaagtg gacgatcaca ccgttaaaat cagcttaaaa
    13081 gtgccaaatg cgccgttctt agctaactta gcgatggatt tcaacgccgt ttactcagcg
    13141 gaatatgcag agcaatcctt aaaggccggc aagcctgagc gtattgatac caacccaatc
    13201 ggcagcggcc cgttccagtt tgtggattac caaaaagatg ccaccgttcg ttacaaagcc
    13261 tttgaaaact actggcaagg cacagcgaaa attgaccgct tagtgtttgc aattactccg
    13321 gatgcatcgg tacgtttagc caagttacaa aaaggcgagt gccacgcaat gccttaccct
    13381 aacccggctg atatcgaaga tctgaaaaaa gatccaaata ttgaattaat gagccaatct
    13441 ggaatgaata tcggctattt ggcattaaat tcatcgatta aaccattaga taaccaaaag
    13501 gtacgtcaag cattaaatca cgctgtaaac aaacaagcga ttgtagatgc ggtatatcag
    13561 ggagccggtc aagtagcgaa aaacccaatt ccaccaacaa tgtggagcta taatgaagcg
    13621 gttcaagact atgactacaa ccctgaaaaa gccaaagcat tgttaaaaga agccggtttt
    13681 gaaaatggtt ttgatactga actttgggca atgccggtat cacgtccata taacccgaat
    13741 gctcgccgta tggctgaact tatccaagaa gactggaaaa aagtgggcgt gaatgcgaaa
    13801 atcgtcagct atgaatgggg cgaatatctc aaacgcttac gccaaggtga agcggcaacc
    13861 tcaatgattg gctggacagg cgataacggt gacccagata acttcctcaa caccttatta
    13921 agctgctcag cggtggaagc cggttcaaac tacgccaaat tctgccacaa accgtttgaa
    13981 gaagtcgtgc ttggtgctgc ccaagaaagc gacaaagcaa aacgtaccga gctttataaa
    14041 caagctcaag tgatcttcaa agagcaagct ccttggatta cgattgctca ctccaccgtt
    14101 tacttcccgg tgcgtaaaga agtaaaaggt tatgtgatga gtccgttcag cttacataac
    14161 ttctacaaag tagatttagc ggataaataa tccgccaaca agcggtagaa tttgcagatt
    14221 tttttacaaa tttgaccgct tgtcctcccc tctttgaact acgaggggca ggggggaaat
    14281 ttggcagaag cgattgccga agtgagagga ttgtaaaaga ggaaataaat tttctgtctt
    14341 attgattatt ttcttcgtta attactactg tcaaatctcc cctaccccct ctttgctaaa
    14401 gaggggaatc agatcgagag atcagacaac tttgatgaaa atccaaccta agagatttta
    14461 aatgttttca tttattttaa aacgtgtgct aatggtgatc cctaccttta tagcgattac
    14521 gttaattact tttgcccttg tgcattttat ccccggtgat ccaattgaga tccgaatggg
    14581 ggaacgtgga ttatcgcctg aggttcatca acaaatgatg gaacaactcg ggctgaaccg
    14641 accgttgttt gaacaataca tcagctacat caaaggtgta ttgcacggtg atcttggtaa
    14701 ctcatttcgt aacaacgaac cggtgctgaa ggaatttttt accctattcc cagccacggt
    14761 tgagttggca ttttttgccc tgctctggtc gttgattttc ggcattattc tcggtgtgat
    14821 tgctgcggtg aaaaaagaaa gttggatttc acacactgta accacgcttt cactgaccgg
    14881 ctactcaatg ccaattttct ggtggggctt gattttaatt ctttatttct ccaccccgct
    14941 cggcttaccg gcttcaggtc gtttaccatc tgaatactgg attgaagccg aaaccggttt
    15001 tatgctgatt gatacttgga attcggacga accaggggca tttttagcgg caattaaatc
    15061 tctgattttg ccgtctatcg tactggggac aatccctctt gcagttgtga cccgaatgac
    15121 tcgctcttca atgttggaag tgttgggtga agactatatc cgcaccgcca aagccaaagg
    15181 cttaaacact acccgaattg tgattgttca cgcattaaga aatgccttga ttccggtggt
    15241 aacggtcgtt ggcttaattg tcgggcaact gctttcagga gccgttttaa cggaaaacat
    15301 cttctcgtgg ccgggtatcg gcaaatggat tattgatgca atcaacagcc gtgattaccc
    15361 tgtactacaa ggctcagtgc tgattattgc tactattatt attttagtga accttacggt
    15421 agatctactc tatggcattg tcaatccgag gattcgacat agttagaaaa attccttcga
    15481 tttttcccct ctttagcaac gagggagtta cacaagcggt tcaaattccg caatttttta
    15541 caagattatt tttagttgga gttaatgatg tcaggaataa cggcggtaaa tccacccgca
    15601 cccaaaacac cgttacagga gttttggtac tatttttgtc aaaatcgggg ggcattaata
    15661 ggacttacct ttattgcaat cgtctttgtt gcgtgcgtat tcgcaccttg ggttgcccct
    15721 tttgatccaa tcgaacaaaa tcgcagtgcg ttattgctcc ctcctgcttg gcttgaaggg
    15781 gggaattccg ctcatctgct gggtactgac gatattgggc gtgatattct ttcccgtatt
    15841 atttatggtt caagattgtc cgtctttatc ggcttagtca ttgtgctact ttcttgcgta
    15901 ttcggcgtga ttttaggtct acttgctggc tactatggtg gcacactcga catcatcatt
    15961 atgcgttttg ttgatattat gctggcgatt ccaagcctgc ttttaactat cggcgtggtc
    16021 actattttag gcccttcatt gataaatgcc gctattgcga ttgcgattgt ctccattcca
    16081 agttatgttc gcttgacccg tgcttctgta ttaagcgaga aaaaccgtga ttatgttact
    16141 gcttctcgtg ttgctggtgc gagcgtgctt cgcttaatgt ttgtggtgat tttacctaac
    16201 tgtttagctc cgcttatcgt tcagatgacg atggggatct caaacgctat tttagaactt
    16261 gccgccctcg gcttcttagg cattggtgca cagccgccaa caccggagct tggcacaatg
    16321 cttgccgaat ctcgtggctt tatgcaatcg gcaaactggc tggtgaccat tccgggtcta
    16381 gcgattttat cgttagtatt agctttcaac ttaatgggtg acggcttgcg tgacgccctc
    16441 gatccaaaac tgaaacaata ggagatctaa aatggcatta ttaacggttg atcaactttc
    16501 cgtccatttt ggtgaaacta aaacaccatt taaagcggtg gatcgtatca gttacgaagt
    16561 caatgaaggc gaagtattag gcattgtggg cgaatccggt tcaggaaaat cggtaagttc
    16621 tctcgctatt atgggcttaa tcgatttccc cggcagggtt atggctgaaa aattgtattt
    16681 taacggcaat gatttattgg cattaaaacc aaaagaaaaa caacagattg taggggctga
    16741 tgtctcaatg atcttccaag atgcaatgac cagcttaaat ccgagctata ctgtgggcta
    16801 tcagattatg gaagccctaa aagtgcatca aggtggctca aaagccagcc gtcgtgagcg
    16861 agcgattgag ttgctgacga tggtcggtat tcccgatcct gaatcccgtt tagaagttta
    16921 tccgcaccag ctttcgggtg gtatgagcca gagagtgatg attgcgatgg cgattgcctg
    16981 tcgcccgaaa ttattgattg ccgatgagcc gactactgcg ttagatgtga cgattcaagc
    17041 tcaaatcatt gatttattac ttgaattaca acgcaaagaa aatatggcgt tgattttaat
    17101 cacgcacgat ttagcgttag ttgccgagtc tgcccatcgc attatcgtga tgtatgcagg
    17161 gcaagtcgtg gaagagggca aagccgagca gatattcaaa gcaccactgc acccttacac
    17221 ccaagcattg ctcaaagcct taccggaatt tgccgaaggg aaatcccgcc tgcaatcact
    17281 accgggcgta gtgccgggca aatatgaccg cccacaaggt tgcttactca accctcgctg
    17341 cccgtatgca accgaaaaat gccgaaccat tgaaccggca atgcagataa tcaacggcag
    17401 acaggtgaaa tgccacacgc cactgaatgc acagggtgag ccgataagga tagctgtata
    17461 acgtcataaa gagtagggac gcaatgcttc gcgtccgtta caagcggtga tttttaaccg
    17521 atttttgcaa aataacgata gtggacgcaa agcattgcgt ccctacattt tccgagaagg
    17581 aaaacagaat gaaagaaaat aattctctcc caccattcct caaagcagtg gacttaaaaa
    17641 aatactaccc agttaaaaag ggaatgttcg ctaaaccgaa aacggtaaaa gcgctggatg
    17701 gtgtctcttt tacccttgaa cgtggcaaaa cccttgcgat tgttggcgaa tccggctgtg
    17761 gaaaatcaac tttggggcga atgctcacta tgattgaaag cccaaccgaa ggtgaactgt
    17821 tctacaacgg gcagaatttc ttagtcaatg acaaagaaac ggctcaacta cgccgtaaaa
    17881 aaatccaaat tgtgtttcag aacccgtata gctcgctcaa tccacgcaaa aaagtaggta
    17941 gcattttaga agaaccatta ttgattaaca ccaacttatc cgcaaaagaa cgcaaagaaa
    18001 aagtgttgga aatgatggcg aaagtcggct taaaaccgga attttacgac cgttatccgc
    18061 atatgttttc gggcggacaa cgccagcgaa ttgcgattgc tcggggctta atgttgcagc
    18121 ctgatattgt ggttgccgat gaacccgttt ccgcattaga tgtttcggtt cgggcgcaag
    18181 tgttgaattt gatgatggat ttgcaagaag aaatgggctt gtcttacgtt ttcatctcgc
    18241 acgatttatc cgtagtggaa catattgccg atgaagtgat ggtgatgtat ttagggcgtt
    18301 gcgtagaaca aggggatacc aaaactatct tcagcaatcc acgtcaccct tatacacaag
    18361 cgttactctc cgcaacccct cgtttgaacc cggagcaacg ccgtgagcgg attaaactga
    18421 ctggcgaact accaagcccg cttaatccac caaaaggctg tgcctttaac gcccgttgca
    18481 gatttgcaac cgatcgttgc tatgtggagc gaccagagct gaaaacctat caagacggta
    18541 ctcgcattgc ttgttttgtg gtggaggaaa ataattaggc aacgctcgct atttaaaagg
    18601 ttaaagtttt tcaactttaa cctttatttt tcatacttaa tactcctcat cttttgtagc
    18661 aaaatctttc attaatttgc tgatatgctc acaatggtgt ttaaatgaca atacgggcaa
    18721 ataatcaaat gcgttttaac gccaatcttc tcttttaaag tgagttttcg ttcctttgag
    18781 tcagaaatta accttgttac ttgtcggcaa ttcatctatt tctctccgtt aatttccttg
    18841 aaagacattg ttgtaactgc agccttgctc gatagattaa tgtatataaa ttatctgatg
    18901 taatatttac tactcgacaa atttcatctg aggttgcctc taaatattcc ctcatcataa
    18961 ataccctagc ttgttttgca ggtaaattgc ttaagcaaac ttcaaataat atccaaaatt
    19021 ctttggaata aacagcttct tcctgccagc tagaaggata atattcttct ttccaatgcc
    19081 cataattatc aaaaaagtga ttctcttcgt catcatcagc ta
//
LOCUS       DANLZD010000038        19099 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.038, whole genome shotgun sequence.
ACCESSION   DANLZD010000038 DANLZD010000000
VERSION     DANLZD010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19099)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19099)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19099
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.038"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..936
                     /locus_tag="PXE26_000973"
     CDS             <1..936
                     /locus_tag="PXE26_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PcfJ domain-containing protein"
                     /protein_id="HDL5593575.1"
                     /translation="PLLAYVKPEYWKCSDLFSYQNWVRSSDKQPFILYAKYQDKMLCE
                     SKGQWRWLKKQSRIVVDQCFLHVNQWQLLTEIQIPFKIPVCVICFILTNFSMISSELE
                     RSRQRRLLSIFIQYIYHYWKDNGFRQLKVHLSHLRVLFQDIEDYMIHEGYLHGIPQTW
                     KHLVSHSEQWHQHILEEQRRDQHILEEQRRENDEAHQALLSTSWSSPIDICYINEIEF
                     QPLTTGQMLFDEGQRMRHCIFTYIDICSEGRYLAFSVKIANESATLGLIKHRGNWKIE
                     QFRYACNIAVCEPMILAAAQKLCKLLNKQSALPQN"
     gene            1032..1664
                     /locus_tag="PXE26_000974"
     CDS             1032..1664
                     /locus_tag="PXE26_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593576.1"
                     /translation="MKTKISLIAVFMLGLSGCVHQQNTAQNSDEITPMPDSLLKPQMQ
                     PLPPQDRIVSKDIYHEQTTSNTEVVRDGRYTLISIAPEEGQKYLLEQVVSVKVPNTKN
                     RFTANVQQGLRTTLTNTGLELCFPPIGEQGNAVQTLFTRPLPKVHYQFGPMKLYEALQ
                     MIAGPAYELTLNDITRTICFKARESSFQNPHKPAVAIQRQQLKPRSLRNN"
     gene            1676..2413
                     /locus_tag="PXE26_000975"
     CDS             1676..2413
                     /locus_tag="PXE26_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03759 family integrating conjugative element
                     protein"
                     /protein_id="HDL5593577.1"
                     /translation="MKRNTINIWLAVLSSVTTNALAQTTSIESSTQTLSQQQSQHQQS
                     QLSDSLKQAKEWGLTIEEWNRYTELMKGERGMWSPNLDPLTALGIEARTAEEREKYAR
                     MLAKKYYERVSKELDFDKVYRQEFEKLYPNELPFEVEPHISQSIGRVIYFTRFDNCDS
                     CKSDLSKILSYANSQTPLDIYIVGQNISDNDIRKWAAENNIDPIKVSKKLITLNHDKG
                     YWFQYSLGKMPAAYQIKQDGEWQSLVY"
     gene            2392..3156
                     /locus_tag="PXE26_000976"
     CDS             2392..3156
                     /locus_tag="PXE26_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HDL5593578.1"
                     /translation="MAISRLLIVITLFAVGISDAKSKPFTGFGTEIDSYIRIAAQRYQ
                     ISEPMLRGLIKMEDGWYGNISPTGATGVGQFTVGTWNWLSETERGKQLGMRLITGKNK
                     GTYADPRRDKYTNTLATALLARWHIEQFHLRRIPATDENLYMAHNIGLDSLHRAMMGK
                     ATKEDILNMRRNGMKSWMTVRDFLNYQKGRFLAHKQEANFMLVSKQGHIHTGVSAFVY
                     PTSEMGKSVKWVEPDNKIIWVEPKSAMIWVEPTNTP"
     gene            3165..3671
                     /locus_tag="PXE26_000977"
     CDS             3165..3671
                     /locus_tag="PXE26_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL5593579.1"
                     /translation="MQHKIKMLLLSLCISHSVWGDLTVIADFGGESAVRFYEALQPEH
                     DENAPNYPNSIPASVSEADILPVVSHKLSPGIIETKQFDLTGIQAIFLIGADNTSAQW
                     LQQNREKLITLNATGLVVNVRTLAELNQLREIVPEIIMLPIPGDDLAERIGIAHYPAL
                     ITETGVSQ"
     gene            3671..5875
                     /gene="traD"
                     /locus_tag="PXE26_000978"
     CDS             3671..5875
                     /gene="traD"
                     /locus_tag="PXE26_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system coupling
                     protein TraD"
                     /protein_id="HDL5593580.1"
                     /translation="MSAKHTLEAWLRPPVEFFPAIVHASCAFVSAAAPWSLALHPSIG
                     YSIAAGFGALSFYRAKQGWQIVRYHQNLKRLPNYSMTSKQIPVSNKYLFVGKGFEWKP
                     IHTQRLHDCFSDNGSKYLEPSKLFKMAREYEKRHENWLTRLTSKDSRWNPVRPLPPVE
                     GIPAIHGIEPDEVDVVQSVSSRVGHTVVFGTTRVGKTRLAEVFVTQDIHRGKTPDERE
                     VVVFFDPKGDADMLKRMYAEAKRAGREDEFYVFHLGYPEISARYNPVGRFNRISEVAG
                     RISGQLSGAGNSAAFKEFAWRFVNIVARALVELGNRPNYVQISQFVQNIDSLFLDYAE
                     KFIRKTDPKIWENLATIAAGLDEKALPFGMKDRPLIFVINKYIAESAVFDPILQGLAS
                     AVRYDRTYFDKIVASLLPLLEKLTTGKISELLSPDYADILDERPIFDWESIIRKRGIV
                     YIGLDALSDATVAAAVGNSMFADLVSMAGHLYKFGTNEGLPGDMGRKTKLVKINLHCD
                     EFNELMGDEFIPLINKGGGAGVQVTAYTQTLSDIEARIGSKPKAGQTLGNFNTLYMLR
                     VKEPATAELLTKQLHEVTIKRSTVTSSTTDSSNPDDDKAFSSNTGQRISESTVPMLVP
                     ANITNLPKGQAFALLDGSKLWKIRMPLPAVDKDDMMPQSLRELTDYMRKNYHVVENWW
                     QPAFTEYTPSRDIAEAFEAMSEPQYNSRIDNQVDNFGIDEPYDIDEEENDDE"
     gene            5868..6221
                     /locus_tag="PXE26_000979"
     CDS             5868..6221
                     /locus_tag="PXE26_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5593581.1"
                     /translation="MSSTKMREENRTNLLDLPNKYRNFDGEFSASCGLDNAEELLIHS
                     QSYFIEWFQQGYSFHQFAEKFAHQGLSLWSADEISMRNTDKSKDVFAFYLAFDHNPSG
                     YILVQCQLDREDSLQ"
     gene            6218..6913
                     /locus_tag="PXE26_000980"
     CDS             6218..6913
                     /locus_tag="PXE26_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03747 family integrating conjugative element
                     membrane protein"
                     /protein_id="HDL5593582.1"
                     /translation="MSEGAKPRRKSGLISLILGKINMLLAAITVSLIFSIILEWVGIA
                     FWWPEEGHLHSQTMMLNEMQWLSDDFSQSLFAKSSTAFATLIIENVYNWLFVYTGIKE
                     WLTSPGNGSMEQWAYHYGRAYIESVIYVVITFIIRLIIIIFTSPLFLLTALSGLTEGL
                     SLRDIRKFGAGRESAYLYHHARRYIMPMMVTAWVVYLSIPFSIHPNFILVPAACLFGL
                     SICITAASFKKFL"
     gene            complement(6943..7302)
                     /locus_tag="PXE26_000981"
     CDS             complement(6943..7302)
                     /locus_tag="PXE26_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593583.1"
                     /translation="MRYLALFPVFLPSIAYPLPQAHKVGDICHAENAPYNYGGLWELS
                     LRGNLVCNYWQFLGDDERKRIESQLDEYGELPLWYSSERETEEDEYPQYWEVEDWDGD
                     DWDIETENEGTNTITDE"
     gene            7500..7826
                     /locus_tag="PXE26_000982"
     CDS             7500..7826
                     /locus_tag="PXE26_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RAQPRD family integrative conjugative element
                     protein"
                     /protein_id="HDL5593584.1"
                     /translation="MSISTSLRKGIVVLVTLSCLPAFASTEQEQLAQAIKQLEAAKLS
                     LQRAEKVAKASPKTREYFNYSAIHRDIETVKKGIQQYINPSRALPRDPNVLRTLSEDY
                     SKLRGQ"
     gene            7826..8059
                     /locus_tag="PXE26_000983"
     CDS             7826..8059
                     /locus_tag="PXE26_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03758 family integrating conjugative element
                     protein"
                     /protein_id="HDL5593585.1"
                     /translation="MSYSPVDAFSAASGIDPFRLKLMIAIIFLSMLLLAVAWALNSGY
                     KGFSFRDKSPFSLLVLFLKGVALLVCVTYFFIY"
     gene            8074..8463
                     /locus_tag="PXE26_000984"
     CDS             8074..8463
                     /locus_tag="PXE26_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2976 domain-containing protein"
                     /protein_id="HDL5593586.1"
                     /translation="MSRIKSLTKHLHSRYLAVMLVFWGTIQHAFAAGPDASKIPDFQI
                     PGVDSNTKDPMEILWIVGKSIITLFAVLLAAGAIFVVVKALISIYNEATSENGKKGWG
                     HFIVALIIGFIVIFFCLWLVKLAVGLF"
     gene            8486..8851
                     /locus_tag="PXE26_000985"
     CDS             8486..8851
                     /locus_tag="PXE26_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03750 family conjugal transfer protein"
                     /protein_id="HDL5593587.1"
                     /translation="MPEQDTTIPFLPTRLNREATVYGGMTVSEFGISAGLGFMLGLIV
                     GLFLWILTDFWLLIPAMAMLLCIATVLIGKGVVAAVKRGKPEAYLNRLIEKKMDDLFN
                     GHKFIRREGFWSIRRYKRK"
     gene            8855..9499
                     /locus_tag="PXE26_000986"
     CDS             8855..9499
                     /locus_tag="PXE26_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03746 family integrating conjugative element
                     protein"
                     /protein_id="HDL5593588.1"
                     /translation="MSQLKSQLHEKDKHIKTTRIFAFLFFIIILVLAGVIYTFPSRLT
                     IYNPPDLRAGSQRAWWEIPKPTIYAFSYQIFQQMNRWMTNGEEDYEKNITALKPFLTP
                     HCEAFLRQDYKDRLRNNELRSRTRMVYEITGRGYSEDKVTVFSEDNWAVNLDLSVDEH
                     FQGQPVKRVYIRFPISIVRMDIDSVKNPWGLGFNCYHSIPKLLEGVEPKTEEKK"
     gene            9499..10380
                     /locus_tag="PXE26_000987"
     CDS             9499..10380
                     /locus_tag="PXE26_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03749 family integrating conjugative element
                     protein"
                     /protein_id="HDL5593589.1"
                     /translation="MKRLPILFASLLISFSGSSFADVLMKWERKPLPIALQVEKERII
                     FVDKNVKVGYPAELDGKLRIQSTGGAVYLKALETFPSTRIEFRDVSTGEIFLFDIVSA
                     TKVANPEESIRMVFDSAVEKQSFSTNRDDEPDLSLTGTRPQLPIPAALTRYAAQSLYA
                     PLRAVEPLEGVRRVAHRLPKKITTLLPAYSIEATPLISWQLDEYVVTAIRLQNKGNSQ
                     ITLDPRELQGQFYAATFQHNWLGGYGGNEDTTTLYLVTEGYANNALIPETHPVKPVGK
                     KVKKTTKVETKPTQSAK"
     gene            10392..11846
                     /locus_tag="PXE26_000988"
     CDS             10392..11846
                     /locus_tag="PXE26_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
                     /protein_id="HDL5593590.1"
                     /translation="MKANKALFVILGIVFTLVGGIVYALFWRSDTPQEPTEQEILDIS
                     IKDLTPEQVRSMGIQGDTPIDTLRTLVTTVKSNERRMDELIDENRQLKQKEDLVNGRI
                     SDAVNNETRKLQEQIADLKMQLFDMATHVNNKSTAQESTPQAEAQPSMTTNKGFGTAG
                     DKLPIGGASMPNVDIGGMYWVEPSDQIGLDAGGKAVSGNTLATKFGFPNDFKGGQTTG
                     NTEKKGLPFFPETDVVTGSQGTTGNSRGKNQITPVYTVPSNSTFLDSVAMTGLIGRIP
                     IDNKVSDAYPFKVLIGRENLIANGIELLDVEGAIVSGTATGDWTLSCVRGDVKSMTFV
                     FNDGRIVSTTNKGNSENIGWLSDSSGIPCVPGERKTNAPEYLGTNFFLAAASAAAQGF
                     SQSQTTTVVDGNSVVGAVTGDQGKFILGQAIGGGLKESADWFRKRFAENFDAVYVPPG
                     HRVAIHIEKEIEIDYNSKGRKVKYGNTSTNTQLD"
     gene            11859..12257
                     /locus_tag="PXE26_000989"
     CDS             11859..12257
                     /locus_tag="PXE26_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03751 family conjugal transfer lipoprotein"
                     /protein_id="HDL5593591.1"
                     /translation="MKALYCIMMSALLITGCTTSTEELLPANGSTMRDIWDKGAGNND
                     LHLYRSQQGRTLDPVDYIPNTEQRAYTRTAENEINNLFPRLPNPDLIMYVYPHQTRSG
                     EPLSIPGYSTVLPFYGRVQYAQPGDRTRGL"
     gene            12257..15094
                     /locus_tag="PXE26_000990"
     CDS             12257..15094
                     /locus_tag="PXE26_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative transfer ATPase"
                     /protein_id="HDL5593592.1"
                     /translation="MMSFLSEVFSSFKPTKTEVISSEPNENSGESDIIQNKMSEVNGE
                     VQPLKRSGKLTLSQHHRRLYSQAPSFIDHLPWGEYLNQHGVILLDDARSVGAVFDIKP
                     IGTAGRSIEFLSRIRNLVKDALQDSFDELDINPYVVQFYCQDSDDLQPYIDQLRNYIS
                     PIAQNSAFSEEWLRVQAKHFKDIGKPEGLFIDDRVTNTAWSGRIRSTKMVIYRYVDKS
                     NDSNENLIIEQLNNACSRINGALTTAGLQLQRLDGEQIRQWLLRWFNPNPSINFEGLS
                     NNDCYHLFGKQTSNDDLPLAFTDFSEDLFYSQPRNEGSYWYFDGQPHEVVVVNNLRKQ
                     PEVGLMTGEITRGRNINALFDLLPESTIMAITIVIHPQDKLEAHLEKISSRAVGENFE
                     SKYLKEDCQTVQAYLKEGHKLYQAAIAFYVRGKDEKELRTRSRQLRTILLSNNLEPVK
                     ENAEIAPLNSYLRWLPMNFNPQMDAKSHYYTKYYFVQHLANLLPIFGRDTGTGNPGIT
                     YFNRGGAPFNFDPFNRKDRTKNAHKLLLGPTGSGKSATLCGQLCQAMAVYRPRTFVVE
                     AGNSFGLLADYAERFGLTVNRITLAPNSGIVLPLFSEAHRLLDMELNPEDVPEDIEDN
                     DDTDDEGDMQRDLLAEMELTARLMITGGEKKEDEKMSRADRAAIRRAILNAARQTKSE
                     GRQTLTEDVKKALEAISRDENTREERRTRLAEMAESLEMFCTGVNGQFFNREGEIWPE
                     ADLTLVDLAMFAREGYEAELAISYISLINHINSLGEKYQHSDRMILNVTDESHIITAN
                     PLLAKFLVKGSKMWRKLGIWLWLATQNMDDFPNEAAKLLSMVEWWELLNVSASEIDEI
                     NRFRKLSEAQKTMLLSAKKSDRKYTEGVVLATNMEALFRVVPPSLFLALGMTEKHEKA
                     ERRQLMMQHGYSELDAALEVAARIDKARGIA"
     gene            15094..15522
                     /locus_tag="PXE26_000991"
     CDS             15094..15522
                     /locus_tag="PXE26_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593593.1"
                     /translation="MMKQHYRLFNVGPQKSSLGIVSSAVETQLLGFCEQIRQLIGIGK
                     QITLFPHRVVQNHWAIELSGEKGSVHLLLNVTGRSLLPTSNYREWPARLVIEIADHVD
                     AYWFATFLAQQLDLKSNLFFLSTSIVDNSMHNEVTDTNEA"
     gene            15512..15829
                     /locus_tag="PXE26_000992"
     CDS             15512..15829
                     /locus_tag="PXE26_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5593594.1"
                     /translation="MKPDTTMPKMKKVRAVLKTTLIIIGIILLLLIVGWLAMTYFPTT
                     NFQAWFYETRYAWLGWRFVLYGVIWFLMVKLNRRGQMPLKARLMILSAIPLIEGINLL
                     YLL"
     gene            15840..17357
                     /locus_tag="PXE26_000993"
     CDS             15840..17357
                     /locus_tag="PXE26_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
                     /protein_id="HDL5593595.1"
                     /translation="MTFTVDSYLEYFLTLLAWIINNNIFAVLVQTGLFILPLIFVLIG
                     TWMEVKKQGEDEGNKGDLLITWLSLKFYPAMFVVVLVLAPMIPINLNNIELNVERSKA
                     CGYRIPTSPEDSGYNQMNSELGNQQARVPLWWGLFHQINKGVTHALTASIPCKPDLRQ
                     VRFEVQHEKINNPALLTEVRLFVQQCYVPARQKIQSSQLSLTPAQVRETSWLGGRILL
                     TNSELYPRYRAQQPHSLFPYNASRDNGLPNNGEGGFPNCAEWWDTANTGLKDRLLADV
                     KQNFSAKVIDFFSSKENADESILRTVLRAENMDISRGKVYPGYGGNLDPTFANATTRL
                     TSSVGSLAASFAAFPAFDAMRQALPMVHAFMLMAVIIITPLVIVMSGYSLKTLVTLTF
                     VSFALVSLTFWWELARWLDSWLLSALYDSSAHSRINPYFLENTQDDFIVNFVMGSMFL
                     VLPAIWLGSMSWAGVKIGDIAAGFTTDSLDSKSAGSQGGNLVKKGGKEISAGFNK"
     gene            complement(17410..17790)
                     /locus_tag="PXE26_000994"
     CDS             complement(17410..17790)
                     /locus_tag="PXE26_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593596.1"
                     /translation="MKFIDFGKQLAKPVKFIKQRTAFLPKPLQQAVVFAVIFAGLPLF
                     LVGFTVLRILNGTPVEDISTNDVAYNPNHVENTVNEIEDDSEDSKPEDLWDVIADQDE
                     NQLDGYRDGYFGYGLYQGGYFVKR"
     gene            complement(17814..18479)
                     /locus_tag="PXE26_000995"
     CDS             complement(17814..18479)
                     /locus_tag="PXE26_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4852 domain-containing protein"
                     /protein_id="HDL5593597.1"
                     /translation="MCKKAFPLWGLIFGLLLSTSAFSVSKNFNYQNILMESLHFSENI
                     ELSSLSKDWLLYSDRNTYHKYQNDEFEFQDKIEQAGKKLQKLVDDRKSEEAPIVFTIP
                     VNSEFGNYDFEQGKFEYQPLMNGHMYISSNQYTENLPRKINLYVSNPEFIDGIPMGKD
                     KAKEFLQKRKNSLGNINRSVILYVDVQFEKAEGLDNLTGKVLSYSVKDNKDKVIYSSR
                     QKQ"
     gene            complement(18698..18943)
                     /locus_tag="PXE26_000996"
     CDS             complement(18698..18943)
                     /locus_tag="PXE26_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593598.1"
                     /translation="MTNDGSIIARGSGFTTYALELENDGLKYLVGFVQPNGNAKEFIE
                     PGATIRRSNDQPSIGSVDCDPRKKIHYKFDVHLMNTL"
BASE COUNT         5866 a         3641 c         3935 g         5657 t
ORIGIN      
        1 ccattattag cctatgttaa acctgagtac tggaaatgct cagacttatt tagttatcaa
       61 aattgggtaa gaagcagtga taaacagccc tttattttgt atgctaaata ccaagataag
      121 atgttatgtg aatcaaaggg tcaatggaga tggttaaaaa aacagtcgag aatagttgta
      181 gatcaatgtt ttctacatgt taatcaatgg cagttactaa cagaaattca aattcccttc
      241 aagatcccag tatgtgtcat atgtttcatt cttactaatt ttagtatgat cagcagtgaa
      301 ttagaacgtt ctagacaacg tcgattactt tctattttta ttcaatatat ctatcattat
      361 tggaaagata atgggtttag acaattaaag gtgcatcttt ctcatctgag agtgcttttt
      421 caagatattg aagattacat gatacatgag ggatatttac atggtatacc tcagacttgg
      481 aaacatttgg tttcacatag cgaacaatgg catcaacaca tattagaaga gcaacgaaga
      541 gatcaacaca tattagaaga gcaacgaaga gaaaatgatg aggctcacca agcactttta
      601 tctacatctt ggtcatctcc aattgatatt tgctatatca atgaaattga atttcaacct
      661 ttgacgacgg gacaaatgtt atttgatgaa ggacaacgta tgaggcattg tatttttaca
      721 tacatagata tctgctcaga ggggagatac ttagctttct ccgtaaaaat agccaatgaa
      781 tcagctactt taggattaat aaaacataga ggaaactgga aaattgaaca atttcgttat
      841 gcctgtaata ttgcagtttg tgagcctatg attttagcag cagctcaaaa actatgtaaa
      901 ttacttaaca aacaatcagc cttacctcaa aattaatttt atctcccaat caacaataga
      961 ataaatcatt caaaatcagc aatgacttcg ccatagttgg cttagattcc tttcacactt
     1021 ggagagatta aatgaaaaca aaaatatcct taattgctgt ttttatgctt ggtttaagtg
     1081 gttgtgttca tcaacaaaat actgctcaaa acagtgatga aatcacacct atgcctgatt
     1141 cattactaaa acctcaaatg caaccattac ctccacaaga ccgtatcgtg tccaaagata
     1201 tctaccacga acaaactacc tcgaataccg aagtagtacg tgacggacgt tacaccttaa
     1261 tcagtattgc tcctgaggaa ggacaaaaat atctgcttga acaagtggta tcggtaaaag
     1321 tgcctaatac taaaaataga ttcacagcca atgttcagca aggcctccgt acaacattaa
     1381 ccaatacagg gttagaactg tgctttccac caataggtga acagggcaat gcagttcaaa
     1441 cgctttttac tcgcccactt ccgaaagtcc attaccaatt cggtccgatg aaattatatg
     1501 aagctctaca aatgatcgcg ggaccggctt atgaattaac acttaatgat attactcgta
     1561 cgatttgctt taaagctcgg gaaagctcat tccaaaatcc tcataagcct gctgttgcta
     1621 ttcaacggca acaattaaaa ccgaggtcat tgaggaataa ttgagggaaa ctccaatgaa
     1681 acgaaatact atcaatatat ggttagccgt actctcttca gtgactacaa atgctcttgc
     1741 tcaaactaca tcaatagaaa gtagcacaca gaccttatcg caacagcaaa gccaacatca
     1801 acaatcacaa ttaagtgata gcctaaaaca ggcaaaagag tggggattaa ccattgaaga
     1861 atggaatcgc tacaccgaat taatgaaagg tgagcgtggt atgtggtcgc caaacttaga
     1921 tcctcttaca gcattaggta ttgaagcaag aactgctgag gagagagaaa aatatgctcg
     1981 tatgttagca aaaaaatact atgaacgtgt gtccaaagaa ctggattttg acaaagtcta
     2041 tcgtcaggag tttgagaaac tgtatccaaa tgaacttcct tttgaagtag aaccacacat
     2101 ttcacaatcc ataggtcgag tgatttattt tacacgtttt gataattgcg attcttgtaa
     2161 aagtgatctc agtaaaatcc tctcttatgc caatagccaa acaccgcttg atatctatat
     2221 tgtagggcaa aacatttctg ataatgatat ccgcaaatgg gctgctgaga ataatattga
     2281 tccgattaaa gtgagtaaga aactgattac acttaatcat gataagggtt attggttcca
     2341 atattcatta ggtaaaatgc cggcagcgta tcaaataaaa caggatggtg aatggcaatc
     2401 tctcgtttat taatcgttat cacgctattt gcggtcggga taagtgatgc taagtcaaaa
     2461 ccttttaccg gatttggtac agaaattgat agctatatcc gtatagcagc tcagcgttat
     2521 caaattagcg aaccgatgct aagagggcta ataaaaatgg aagatggttg gtatggcaat
     2581 atctcaccta ctggtgccac aggtgtaggg caatttactg tgggaacgtg gaattggcta
     2641 tctgaaacag aacgtggtaa gcagcttggt atgcgtttaa ttaccggtaa gaataaaggt
     2701 acttatgctg atcctcgcag agataaatac accaatacgt tagcaacagc gttattagct
     2761 cgatggcata ttgaacaatt ccatttacgt cgcattccgg caacagatga aaatttatat
     2821 atggctcata acattggttt agatagtctg catcgagcaa tgatgggaaa agctaccaaa
     2881 gaagatatct taaatatgcg tcgcaatgga atgaaaagtt ggatgacagt aagagatttc
     2941 ctcaattatc aaaaaggacg ctttttagca cataaacaag aagccaattt tatgttggtc
     3001 tcaaaacagg ggcatattca tactggtgtt tccgcctttg tttatcctac aagtgaaatg
     3061 ggaaaatcag taaagtgggt tgagccagac aacaaaataa tttgggttga acctaaaagt
     3121 gcaatgattt gggtagaacc tacaaatacg ccatagaggt aaaaatgcaa cataagataa
     3181 aaatgctatt gctcagttta tgtatatctc attccgtttg gggcgattta acggtaatcg
     3241 ctgatttcgg cggtgaaagt gcggtacgtt tttacgaagc tttacaaccg gaacacgatg
     3301 agaatgcacc gaactatccg aattctattc cagcttcggt tagcgaagct gatattctac
     3361 ctgtagtctc tcataaactg tctcctggta ttattgaaac aaaacaattt gatttaacag
     3421 gaatacaagc gattttttta attggagcag ataatacctc agctcaatgg ttacagcaga
     3481 atcgagaaaa gttgatcacg ttaaatgcca ctgggcttgt tgtgaatgtc cgaacattag
     3541 cagagctgaa tcaattacga gaaattgtgc cagaaataat aatgctacca atccccggag
     3601 acgaccttgc agaacgaatt ggtatcgcac attaccctgc cctgattact gaaaccggag
     3661 tttcacaata atgtcagcta aacatacctt ggaggcgtgg ttacgccctc ctgttgagtt
     3721 ttttccggca attgttcatg cttcttgtgc ttttgtcagt gctgctgcgc cttggtctct
     3781 agcactccat ccaagtatcg gctatagtat tgcagccggt ttcggtgcgt tgagttttta
     3841 tcgagcaaaa caaggatggc aaattgttcg ttaccatcaa aatctgaaac gtttaccgaa
     3901 ttattcaatg acgagtaaac aaattccggt cagtaataag tatctatttg tcggcaaggg
     3961 atttgaatgg aaacctattc acactcaacg gctacacgat tgtttttcgg ataacggttc
     4021 aaaatatctg gagccttcta agctatttaa aatggctcgt gagtatgaaa aacgccacga
     4081 aaattggcta acacgtctta cctcaaagga tagccggtgg aatccggtta gacctctgcc
     4141 accggttgag ggtattcctg ctatccatgg aattgagccg gatgaagttg atgtcgttca
     4201 atccgttagc tctcgggttg ggcatacggt agtattcggt acaacacgtg tcggtaaaac
     4261 tcgtttagct gaggtctttg ttacccagga tatccaccga ggcaaaacac cggatgagcg
     4321 tgaggttgtt gtctttttcg atccgaaagg cgatgccgat atgctcaaac gaatgtatgc
     4381 agaagcaaag cgagctggaa gagaagatga gttttatgtt ttccatttgg gatatcctga
     4441 aatttcggct cgctataacc cagtgggacg ttttaatcgt atatcagaag tcgctggacg
     4501 tatttcagga caactcagtg gagccggtaa ctcagcggca tttaaagagt ttgcttggcg
     4561 atttgtcaat atagttgcac gtgcattagt tgaattagga aatcgtccaa actatgttca
     4621 gatttcccaa tttgtacaaa acattgattc attattcctt gattatgcgg aaaaatttat
     4681 tcgtaaaact gaccctaaaa tttgggaaaa tttagcgaca atagccgcag gattagatga
     4741 gaaagctctt ccttttggaa tgaaagatcg ccctctaatt tttgtgatca acaaatatat
     4801 cgctgaaagt gcagtgtttg acccgatttt acaaggactc gccagtgccg tgcggtatga
     4861 ccgtacctat tttgataaaa ttgttgcttc gttattgccg ttattggaga aattaacgac
     4921 cggaaaaatt tccgaacttt tatctccgga ttatgccgat attttggatg aacgccctat
     4981 ttttgactgg gaatccatta tccgtaaacg aggaattgtt tatattggtt tggatgctct
     5041 ctccgatgct acagttgctg ccgcagtcgg aaacagtatg tttgcggatt tagtatcaat
     5101 ggcaggtcat ttgtataaat ttgggacaaa tgagggattg ccgggtgaca tgggcagaaa
     5161 aaccaaactg gtgaaaatca atcttcattg tgatgaattc aatgaattga tgggcgatga
     5221 atttatccct ctcatcaaca aaggtggtgg tgccggagta caagttactg cttatacgca
     5281 aacgctctcc gatattgaag cccgtattgg cagtaaaccg aaagcgggac aaaccttagg
     5341 taactttaat accctatata tgctcagggt aaaagaaccc gctacggcag aattgcttac
     5401 aaaacagtta cacgaagtga cgattaagcg tagcacggtc acgtccagta cgactgactc
     5461 cagtaacccg gatgatgaca aggcatttag ctcaaataca gggcagcgga ttagtgaaag
     5521 tactgttcct atgctggttc ctgccaacat taccaattta ccaaaaggac aagcattcgc
     5581 tttactggat ggtagtaaat tatggaaaat tcggatgccg ttaccggctg tcgataaaga
     5641 tgatatgatg cctcaatctc tacgagagct gacagattat atgcgtaaaa actatcacgt
     5701 tgtcgaaaat tggtggcaac cagcatttac agaatatacg ccgtcccgag atattgcaga
     5761 agcttttgaa gcgatgtcag agcctcaata taactcacgg atagacaatc aggtcgataa
     5821 tttcggcata gatgaaccct atgatattga tgaagaggaa aatgacgatg agtagtacca
     5881 aaatgagaga agaaaataga accaacctct tagatttacc caataaatac cgtaattttg
     5941 atggcgagtt ttcagcttct tgtggactag acaatgccga agagctcctt attcatagcc
     6001 aatcctattt tatcgagtgg tttcaacaag gctactcttt ccatcaattt gctgaaaaat
     6061 ttgcacatca aggactttca ttatggtctg ctgatgaaat atctatgcgt aatactgata
     6121 aatctaaaga tgttttcgct ttttatcttg catttgatca taatccttct ggctatattc
     6181 ttgttcaatg tcagctcgat cgggaggata gtctgcaatg agtgaaggag ctaaacctcg
     6241 tcgaaaatca ggtttaatca gcctgatttt gggaaaaata aatatgttgc ttgctgcaat
     6301 tacagtatct ctcatattca gcattatttt agagtgggta ggaattgcgt tttggtggcc
     6361 ggaagaagga cacttgcata gccaaacgat gatgctcaat gagatgcaat ggctatcaga
     6421 tgatttctct caaagcctgt ttgccaaatc ttctactgct tttgcaacat tgattatcga
     6481 aaatgtctat aattggttat ttgtttatac gggtattaag gagtggctaa cttcaccggg
     6541 taacggtagt atggaacagt gggcatatca ctatggtaga gcctatattg agtctgttat
     6601 ttatgtcgtg atcaccttta ttattcgcct cattattatt atttttacca gtcccctctt
     6661 tctattgacc gcactttctg gtttaaccga aggattatca ttacgggata ttcgaaaatt
     6721 tggtgccggg cgggaatcag cctacctata ccaccacgct agacgttata ttatgccgat
     6781 gatggtaaca gcttgggtag tttatttgtc tatcccgttt tcgattcacc ctaacttcat
     6841 tttagtccct gctgcctgtt tatttggttt gtccatctgt ataactgcag cgagcttcaa
     6901 gaaattcttg taaagataat aagcctcagt aatatactgg ggctattcgt ctgttatagt
     6961 gtttgtccct tcattttctg tttcaatatc ccaatcatct ccatcccaat cttcgacttc
     7021 ccagtattgt ggatattcat cctcttcggt ctctcgttca gagctatacc aaagaggcaa
     7081 ttccccatat tcatccaatt gtgactctat gcgttttctc tcgtcatcac ccagaaattg
     7141 ccaataatta cagactaaat ttcccctcaa acttaattcc caaagaccac cgtaattata
     7201 tggggcattt tctgcatggc agatatctcc cactttatgt gcctgcggaa gagggtaagc
     7261 aattgatggg agaaatacag ggaatagagc taaatatctc atctggtatc tcatggtaaa
     7321 gcgtgaatac tcaactttaa tactaactta ttaagtaaca ctgacacagt tgaatatctt
     7381 tctaaccatt taatattttg tgcaatttct cttctgattg gtaacagagt tttccattaa
     7441 attttaggat cgcttttggc actcttaact tgaagtaaaa ctaaaaatag aggtgcacta
     7501 tgtctatttc aacatcttta aggaaaggta ttgttgttct tgttacctta tcttgcttgc
     7561 cggcatttgc ttcaacagaa caagagcaat tagctcaggc aattaagcaa ctggaagcgg
     7621 ctaaattatc actccaacga gcagaaaaag tggctaaagc ctcgcctaaa acacgagaat
     7681 acttcaacta ttctgccatt caccgtgata ttgaaaccgt caaaaaggga attcaacaat
     7741 atatcaaccc aagcagagca ttacctcgtg atccgaacgt actacgtact ttaagtgaag
     7801 attacagcaa actacggggg caatgatgtc ctattcccct gttgatgcat tttctgcagc
     7861 gagtggtatc gatcctttca gattgaaact catgatagct attattttcc tttcaatgct
     7921 gttactagca gtcgcttggg ccttaaatag tggctataag gggttttcat ttagagataa
     7981 aagtcctttt tcacttttag ttttatttct caaaggagta gcactattag tttgtgttac
     8041 ttatttcttt atctattaga ttcgaggtct attatgagcc gtattaaatc tcttacgaaa
     8101 catctgcata gtcgttattt agctgtaatg ctcgtattct ggggaactat ccaacatgcg
     8161 tttgcagccg gtccggatgc atccaaaatc ccagacttcc aaattccagg cgtggatagt
     8221 aatactaaag atccaatgga aattctttgg attgtaggta aaagtatcat taccttattt
     8281 gcggtattac ttgccgccgg tgccattttt gttgtcgtta aagccttgat cagtatctat
     8341 aacgaagcaa cttctgaaaa cggcaagaaa ggctggggac actttattgt tgctttaatt
     8401 atcggcttta ttgtgatttt cttctgcttg tggttagtca aacttgcagt cggactcttc
     8461 taattaaaat gtctaggaga ccaatatgcc agaacaagat acaaccattc cttttttgcc
     8521 tactcgcctc aatcgagagg ctaccgttta cggcggtatg acagtgagcg aattcggcat
     8581 atctgctgga ttgggattta tgttaggtct gattgttggt ctcttcttgt ggatattaac
     8641 tgatttttgg cttcttattc cggcaatggc aatgttgctc tgtatcgcaa ccgttttaat
     8701 tgggaaaggt gttgtagccg ctgttaagcg aggaaagccc gaagcctact taaataggtt
     8761 aattgaaaag aaaatggatg acctctttaa cggtcataag tttataagac gagaagggtt
     8821 ttggtctatt cgccgatata aaaggaaata acaaatgagc cagttaaaaa gccaattaca
     8881 cgaaaaagat aaacatatca aaacgactcg aatttttgcc ttcctgtttt tcattattat
     8941 tttggtgctc gcaggcgtga tctacacatt cccaagtcgc cttacgatat acaacccacc
     9001 agatctacga gcagggagcc aacgagcttg gtgggaaatt cctaaaccaa caatttatgc
     9061 attttcttat caaattttcc agcaaatgaa tcgttggatg acaaatggcg aagaggatta
     9121 cgagaagaat attaccgccc tcaaaccatt tttaacacca cactgtgaag catttttacg
     9181 acaagattat aaagatcgtc tccgtaacaa tgaactacgt agccgaactc gtatggtata
     9241 tgaaattacc ggtcgaggct acagtgaaga taaagtgacc gtatttagcg aagacaattg
     9301 ggccgtcaat cttgatttaa gcgtagatga acatttccaa ggacaaccgg taaaacgagt
     9361 ctatatacgt tttcctatca gtattgtgag aatggatatc gattcagtca aaaatccttg
     9421 gggattaggg tttaactgct atcactccat tccaaaactc ttagagggcg ttgagccaaa
     9481 aacagaggag aaaaaataat gaaacgtcta ccaattttat tcgcttcttt actaataagc
     9541 ttctctggga gtagctttgc tgatgtcttg atgaaatggg aaagaaaacc cttgcctatt
     9601 gcattgcaag tggaaaaaga acgaatcatt tttgtcgata aaaatgtcaa agttggctat
     9661 ccggctgaat tagatggcaa attacgcatt caatcaacgg gtggcgcagt gtacttaaaa
     9721 gccctagaga cattcccttc tacccgtatt gaatttcgtg atgtttctac aggtgaaatt
     9781 ttcctctttg atattgtttc tgcaaccaaa gtagctaatc cggaagaatc aatacgaatg
     9841 gtatttgata gtgcggtaga aaaacaatct ttttcaacga atagagatga tgaacctgat
     9901 ctatctttga ccggcacacg accacaatta ccgataccgg cagcattaac ccgttatgcc
     9961 gcacaatcac tttatgcgcc actgcgtgca gttgagcctt tagaaggagt tcgtcgtgta
    10021 gcacatcgac ttccgaaaaa aattaccaca ttgctccctg cgtattcgat agaggcaaca
    10081 cctttaatca gctggcaatt ggacgaatat gtagtcacgg ctattcgtct acaaaacaaa
    10141 ggtaatagtc aaattacact cgatcctcga gaacttcaag gacaatttta tgctgcaact
    10201 ttccagcata attggcttgg aggatatgga gggaatgaag ataccacaac cctgtattta
    10261 gtgacggaag gctatgctaa taatgcgctt attccggaaa ctcaccctgt taaacccgtc
    10321 ggtaagaaag tgaaaaaaac aacaaaagtt gaaactaaac cgactcaatc ggcgaagtag
    10381 gaggagaagc tatgaaagcg aataaagcct tgtttgtcat attggggatt gtgtttaccc
    10441 tagtcggtgg gattgtctat gccttatttt ggcgaagtga tacaccccaa gaaccaacag
    10501 agcaggaaat tttagatatt tccattaaag atttaacacc ggaacaagtc agatcaatgg
    10561 gcattcaagg tgatacgccg attgatactc tgcgtactct tgtgacaacc gttaaatcca
    10621 atgagcgtcg tatggatgaa ttaatcgatg aaaaccgaca actcaagcag aaagaagatt
    10681 tagtgaatgg tcgtatcagt gatgcagtga ataatgaaac tcgcaaacta caagagcaga
    10741 ttgcagattt gaaaatgcag ttatttgata tggcaacaca tgttaataac aaatcgacag
    10801 cacaagaatc aactcctcaa gcagaagctc agcctagtat gacaacgaat aaaggatttg
    10861 gtactgccgg agataaatta cctatcggtg gtgcttctat gcctaatgtg gatattggag
    10921 gaatgtactg ggtagagcca agcgatcaaa ttggattgga tgcaggtgga aaagctgtat
    10981 caggtaatac acttgcaact aagtttggat tcccgaatga ttttaaaggt ggacaaacta
    11041 ctggaaatac cgaaaagaaa ggtctgccgt ttttcccgga aactgatgta gtgacaggct
    11101 cgcaaggaac aacaggaaat tctcgtggta aaaaccagat tacgccggtt tacaccgtac
    11161 caagtaattc cacattcctt gattcagttg caatgacagg gcttattggg cgtatcccga
    11221 ttgataataa agtctctgat gcttatccat ttaaagtact gattggtcgt gagaatctca
    11281 ttgccaatgg tattgaatta cttgatgtag aaggtgcgat tgtttcgggt acagctactg
    11341 gcgactggac tctatcttgt gtacgaggcg atgtaaaaag tatgaccttt gtgttcaatg
    11401 atgggcgtat tgtcagcacg actaacaaag ggaatagtga gaatatcggt tggttatctg
    11461 atagttcagg cattccttgt gttcccgggg agagaaaaac aaatgcacca gaatatttag
    11521 gcacaaattt cttcttagcg gctgccagtg ccgcagccca agggttttca caatcacaaa
    11581 caacgacagt agttgatggc aatagtgttg ttggagctgt taccggtgat caaggtaagt
    11641 tcatcttagg gcaagccatc ggcggtggtt taaaagaatc cgccgactgg tttagaaagc
    11701 gttttgctga aaactttgat gctgtctatg taccacctgg acatcgtgtc gctattcata
    11761 tcgagaaaga gattgagatc gattacaact ccaaaggacg taaagtgaaa tacggaaaca
    11821 catcaactaa tacacaactt gattaaaagg aacaaacaat gaaagcttta tattgcataa
    11881 tgatgagtgc cttattgata acaggttgca caacttcaac tgaagaatta ttacccgcta
    11941 acggcagtac gatgcgagat atttgggata aaggagcagg taataacgat ctacacttat
    12001 accgttcaca acaaggacga acactcgatc ctgtcgatta tattcctaac actgagcaac
    12061 gagcctatac ccgtacggca gaaaatgaaa ttaataactt gttccctcgt ttacctaatc
    12121 cggatctgat tatgtatgtg tatccacacc aaactcgttc cggagagcct cttagtattc
    12181 caggatattc tacggtatta cctttctacg ggcgagtcca atatgctcaa ccgggtgatc
    12241 gaacaagagg gctttgatga tgtctttttt aagtgaggta ttttcctctt tcaaaccgac
    12301 taagacagag gttatatcaa gtgaaccaaa tgaaaattca ggtgagtctg acatcattca
    12361 aaataaaatg agtgaggtaa atggcgaggt tcaaccatta aaacgcagtg gaaaactcac
    12421 cctgtcacag catcaccgtc ggttatactc acaagccccc tcttttattg atcatctacc
    12481 ttggggagaa tatttgaatc aacacggtgt gatactcctc gatgatgctc gtagtgtcgg
    12541 ggcggtattt gatatcaagc cgattggtac agcaggacgt agtattgagt ttttaagcag
    12601 gatacgaaat cttgtcaaag atgccttaca agatagcttt gatgagctgg atataaatcc
    12661 ttacgtcgtg caattttatt gccaagatag cgatgattta cagccttata ttgatcagct
    12721 acggaattat atctcgccta ttgcccaaaa tagtgcattt agcgaagaat ggttacgagt
    12781 acaagccaag catttcaagg atattggtaa accagaaggg ctttttattg atgacagagt
    12841 gacaaataca gcttggtctg gacgtattcg gagtaccaaa atggtgattt atcgatatgt
    12901 agataagtcc aatgattcca atgaaaatct tattattgag cagcttaata atgcttgttc
    12961 ccgaatcaat ggggctctaa caacggctgg attacagtta cagcggctag atggtgaaca
    13021 aattcgccaa tggttattgc gttggtttaa tcctaatcca tctattaatt ttgagggatt
    13081 aagcaacaat gattgttacc atctttttgg caaacaaacc tcaaatgatg atcttccatt
    13141 agcttttact gatttcagtg aggatttatt ttattcacag ccgagaaatg aaggtagcta
    13201 ttggtatttt gacggacagc cacacgaggt tgttgtcgtc aataatttaa gaaaacaacc
    13261 agaagtgggc ttaatgaccg gcgagattac tcgtgggcgt aatattaatg cgttatttga
    13321 cctattgcca gaatcaacca tcatggcaat taccatcgtc atccatcctc aggataagtt
    13381 ggaagcacat ttagaaaaaa tcagtagtcg agcagtgggt gagaattttg agtcaaaata
    13441 cctaaaagaa gactgtcaaa ctgtacaggc ttatcttaaa gagggtcata aactctatca
    13501 agcagctatt gcattttacg ttcgaggtaa ggacgaaaag gaattgcgta ctcgatctcg
    13561 ccaactaaga acaattctgc tcagtaacaa tttagagccg gtaaaggaaa acgcagaaat
    13621 tgctcctctt aatagttacc tacgttggct accaatgaat tttaatccgc agatggatgc
    13681 caaatcccat tactacacga agtactattt tgtacaacat ttggcaaact tattgcctat
    13741 ctttggtcga gatacaggca ctggtaatcc ggggattact tactttaatc gaggaggagc
    13801 tccgtttaat ttcgatccgt ttaaccgtaa agacagaacc aaaaacgctc acaaactctt
    13861 attaggacca acaggctcag gaaaatcagc aacactatgt gggcaattat gtcaggctat
    13921 ggccgtttat cgtcctcgga cgtttgttgt ggaggcagga aattcatttg gtttattagc
    13981 ggactatgca gaacgttttg gactgaccgt aaatcgcatt acgttagccc caaacagtgg
    14041 cattgtctta ccgctctttt cagaagccca tcggttattg gatatggaat taaatccgga
    14101 agatgtgccg gaagacattg aggataacga tgacactgat gatgaaggcg atatgcaacg
    14161 agatttgttg gccgaaatgg agctgacagc acgtttaatg atcactggtg gcgaaaagaa
    14221 agaagatgaa aaaatgagcc gtgctgacag agcagccatt cgacgtgcca ttttaaatgc
    14281 ggctcgccaa actaaatccg aaggcagaca aacgctaact gaagatgtga aaaaggcatt
    14341 ggaggctata agccgtgatg aaaatactcg tgaagaacgg cgtactcgtt tggccgaaat
    14401 ggcagaatca ttggaaatgt tctgtaccgg agtcaatgga caatttttca accgggaagg
    14461 cgaaatttgg ccggaagcag atctgacatt ggttgatcta gccatgtttg cccgggaagg
    14521 ttatgaagca gaattggcca tttcctatat ttcactcatt aaccatatca acagtctcgg
    14581 tgaaaaatac cagcatagcg acaggatgat tctgaatgta accgatgaat cacacattat
    14641 cactgccaac ccattattag cgaaattctt ggtgaaaggc tcaaaaatgt ggcgtaaatt
    14701 agggatttgg ctgtggcttg cgacacagaa tatggatgac ttccccaatg aagcagcgaa
    14761 attgctctca atggtcgaat ggtgggaact gttgaatgtg tctgctagtg aaattgatga
    14821 aatcaatcgc ttccggaaac tgtccgaagc tcagaaaacg atgttgttat ctgccaaaaa
    14881 atcagatcgt aaatataccg aaggtgtggt attggcaaca aatatggaag cgctattccg
    14941 tgttgtacca ccgagtttat ttttggcttt aggaatgacc gagaaacacg aaaaagcaga
    15001 acgtcggcaa ttaatgatgc aacatggtta ttctgaatta gatgctgctt tagaagtcgc
    15061 tgctcgtatt gataaagcga ggggaattgc ataatgatga aacaacacta tcgactattt
    15121 aatgtcggac cacaaaaatc ctcattaggg attgtatctt cggcggtaga aactcaactg
    15181 cttggatttt gtgaacaaat tcgccaactc atcggtatcg ggaagcagat taccttattc
    15241 cctcatcggg tagtgcaaaa ccactgggct atcgaactta gcggcgagaa aggctctgtt
    15301 cacttattac taaatgtgac ggggcgttct ttactgccta cttccaatta ccgtgaatgg
    15361 cctgctcgtt tagtcatcga aatagccgat catgtggatg cttactggtt tgcaacattc
    15421 cttgctcagc aattggattt gaaaagtaat cttttcttct tatccacatc aattgtggat
    15481 aactctatgc ataacgaggt aacggatact aatgaagcct gatacgacaa tgcctaaaat
    15541 gaaaaaggtg agagctgtat taaaaacaac cttgattatc atcggtatta tcttactact
    15601 acttattgtt ggttggctgg caatgaccta tttccctacc acaaattttc aagcgtggtt
    15661 ctatgaaacc cgttatgcat ggttgggatg gcgatttgta ttatatgggg ttatttggtt
    15721 cttaatggta aaactcaatc gaagaggaca aatgccattg aaagccagac tgatgatttt
    15781 atctgctatc ccccttatag agggaattaa tttactgtat ctactttaag gaggatgaga
    15841 tgacctttac cgtagatagc tacttagaat actttttgac cttactagct tggatcatta
    15901 acaataatat ttttgctgta ctggttcaaa ccggtctatt catactaccg ctgatttttg
    15961 ttttaatcgg cacatggatg gaagttaaaa agcaagggga ggacgaaggt aataaaggag
    16021 atttacttat tacttggctc agccttaaat tttatccggc gatgtttgtt gtagtgttag
    16081 ttttggcccc gatgatacct atcaacctta acaatattga gctgaatgtt gaacgttcca
    16141 aagcctgtgg ctaccgtatt ccaacctcac cagaggatag tggttataat caaatgaact
    16201 ctgaattggg caaccagcaa gcgagagtac cgctttggtg gggattattc catcaaatca
    16261 acaaaggagt tacacacgca ttaacagctt caattccgtg taaaccggat ttacgtcaag
    16321 ttcgctttga ggtccaacat gaaaaaatca ataatcctgc attattgact gaggttcgct
    16381 tatttgtaca acaatgttat gtacctgcac gtcagaaaat tcaaagcagt cagctctcat
    16441 tgactccggc acaggtgcgt gaaaccagct ggttaggtgg tcgtattctt ttgacaaaca
    16501 gtgagcttta tccccgttat cgagctcaac aacctcatag tctatttccc tacaatgctt
    16561 cccgggataa tggattgccg aataatgggg aaggtggttt tccaaattgt gcagagtggt
    16621 gggatacggc gaatactggt ttaaaagatc gtttattagc tgatgtcaaa cagaacttct
    16681 ctgcaaaagt gattgatttt tttagcagca aagaaaatgc ggatgaatcc atactccgta
    16741 ctgtattacg agcagagaat atggatattt cgagagggaa agtttatccc gggtatgggg
    16801 ggaatttaga tcctacattt gcaaatgcaa cgactcgatt aacatcttca gtgggaagct
    16861 tagctgccag ctttgcagcc tttccagcat tcgatgcaat gcgacaagca ctgccgatgg
    16921 tacatgcttt tatgttgatg gctgtgatca tcattactcc gctggttatt gtgatgagtg
    16981 gttattctct caaaacatta gttacattaa cttttgtgag ttttgctttg gtatcactga
    17041 cattctggtg ggaattagca agatggttag attcttggct actatccgct ctatatgatt
    17101 ccagtgcaca tagtcgaata aatccgtatt tccttgaaaa tacgcaagat gattttatcg
    17161 tcaattttgt gatgggttcg atgttcttgg ttttaccggc gatttggcta ggcagtatgt
    17221 cgtgggctgg agtaaaaata ggagatatag ctgccggttt tactactgat tcattagata
    17281 gtaaatccgc aggctctcaa ggtggtaatt tagttaagaa aggcggtaag gaaatatctg
    17341 cagggtttaa caaataaaac aataaggtag aggttaatct ctaccttatt aatttctaat
    17401 catattttct catcttttta caaaatagcc accctgatag agtccatatc caaaatatcc
    17461 atcacgatat ccatcaagct gattttcgtc ttgatcagca attacatccc ataaatcttc
    17521 cggcttacta tcctcactat catcttcaat ttcattaacc gtgttttcga cgtggtttgg
    17581 attatatgct acgtcatttg ttgaaatatc ttctactggt gttccattga gaattcgcag
    17641 aaccgtgaat ccaactaaaa acaagggaag tcctgcaaaa atcaccgcaa aaacgacagc
    17701 ttgttgtagc ggttttggta aaaatgcggt acgttgtttg ataaatttaa ccggcttagc
    17761 gagctgcttt ccgaaatcga taaatttcat agtatctttc ctaagataaa aggttattgt
    17821 ttttggcgac tactataaat tactttatct ttattgtctt ttacagaata agataaaact
    17881 tttcctgtta aattatctaa tccttctgct ttttcaaatt gtacatcaac atacaatata
    17941 acagagcgat ttatgtttcc caaagaattt ttacgcttct gtaaaaactc tttagcttta
    18001 tccttgccca taggtatacc gtcaataaac tcgggattag aaacatacag attaattttt
    18061 cttggcaaat tttcagtata ttgattagaa gaaatataca tatgcccatt catcaggggt
    18121 tggtactcaa acttaccttg ttcaaaatca taattcccga attctgagtt tacaggaatt
    18181 gtgaaaacaa taggggcttc ttcagatttt ctgtcatcca ccagtttttg tagtttctta
    18241 ccagcttgct caattttatc ctgaaactca aactcgtcat tttgatattt atgatacgta
    18301 tttctatcgc tgtaaagtaa ccagtcttta gataacgaac taagctcgat attctcacta
    18361 aaatgtaatg attccatcaa tatgttttga tagttgaagt ttttagacac tgagaatgct
    18421 gaagtggata gcagtaatcc gaagattaag ccccataatg ggaaagcttt tttacacatt
    18481 tttatctcct gacacattag agagtttaaa ttatgataga tccacctgat aataaagagc
    18541 aagtctttta aacaaaaatc ccttagattt tttaaaccta agggatttac ctaccgagca
    18601 ttgtgttttt taacgtgggt cagctctgac accacaattg ttcatctgcc gagctttgtc
    18661 ttttttaact tgggctagct ctagcaccac aaaggtatta taaagtattc atcaaatgaa
    18721 catcaaactt ataatggatt tttttacgag ggtcacaatc cacagaacca atacttggtt
    18781 gatcattact acggcgaatt gttgctcccg gctcaataaa ctcttttgca tttccatttg
    18841 gttgaacaaa tccgactaga tatttcaagc catcattttc caactctaag gcataagtag
    18901 taaaacctga gcctctggcg ataatcgaac cgtcgttggt cactgccttt ttaatcgggt
    18961 ttttgaaagt agttttgtca tacgaatact cgtaatcatt tcctacccgt ttaactgtga
    19021 gaggtttacc ttctgtgctg gtaaaagtcg gagatatggg aaatagtgtg gtgcaatata
    19081 aaattaatac taaaataaa
//
LOCUS       DANLZD010000039        18448 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.039, whole genome shotgun sequence.
ACCESSION   DANLZD010000039 DANLZD010000000
VERSION     DANLZD010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18448)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18448)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18448
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.039"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(428..2617)
                     /gene="yccS"
                     /locus_tag="PXE26_000997"
     CDS             complement(428..2617)
                     /gene="yccS"
                     /locus_tag="PXE26_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01666 family membrane protein"
                     /protein_id="HDL5593599.1"
                     /translation="MNKFLRYLQHSWLSENVIKTLPMFISLNIAAVSIWQLGISDFAM
                     PLMLGIIAGGLVDLDNSLIGRAKNLIISLVAFSLSSIGASVSLHLGWLFVPVAVVCTF
                     LLVMLGAIGQRYSTIAFGTLIVAVYNSLAYTPEVLWYHNVVMILLGTLLYGLVGILVY
                     LIFPNRTVQENLASAYLALSHYLLAKSAYFDPDDDDLAAKQLALAKANSEVMAAFDKT
                     RVALFYRLSRQHKQQRTQRMLRYYFTAQDILERASSSHYQYHELFQQLSNSDLMFRFQ
                     RVLELQAAACQKIAMSLRHREVYEHGVRGEKALQGLLNSLNYHQERGLKSAYRWRAIA
                     ENLGNIERQLAQIEQGSSSGEHIEPLSKNFTKSHRLIAENITGLSNISQAIKAHLTFE
                     SQLFRHAVRLSIVVLLCSAIVPILGFDSKGYWILLTAIFVCQPNYTATKTRLIQRVIG
                     TIFGVLVGGSFELFNVALSLEAQLGLIVLTGSLYTFFRLVHYGFSTFYITVLVMISLD
                     IAGVSLESGILMRMLDTLLGTAIAWLAVAFLWPDWKYLNLQRNLHNGLKASGQYLRHI
                     IAQLQFGYNEQLPYRIARRDVHNHLSALSNAITNMYSEPQKYANDLTFAPKLLGIAYT
                     LLGYISTLGAYRIASREINQQVDFSAMFFSHAREVANIIGQIASESRSFAKLSEKLTA
                     IDQDLTQFEQENQQKQNDLALVLIQQLRLIVQLLPQLNSILQLKSVR"
     gene            complement(2661..3119)
                     /locus_tag="PXE26_000998"
     CDS             complement(2661..3119)
                     /locus_tag="PXE26_000998"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HDL5593600.1"
                     /translation="MKTTVRTIAKQKQIALVAHDSCKQDLIRWTQTHQAQLASHKLYA
                     TGTTGHLLARETGLEITSLLSGPMGGDQQLGGLIAEKKIDLLVFFWDPMNAAPHDPDV
                     KALMRIATVWNIPVAINETTANFLLNADLFNQAISVNVPDYDGYLAERLG"
     gene            3245..4519
                     /gene="thrC"
                     /locus_tag="PXE26_000999"
     CDS             3245..4519
                     /gene="thrC"
                     /locus_tag="PXE26_000999"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HDL5593601.1"
                     /translation="MNLYNIKHPEEQVNFAQAVRQGLGKNQGLFFPEVLPKLDSIDEL
                     LDLPLVKRSQKILSALIGEELPQETLNAMVKNAFTFPAPLAKVNDDIYALELFHGPTL
                     AFKDFGGRFMAQALANVRGDGKITILTATSGDTGAAVAHAFYGLENINVVILYPKGKI
                     SPLQEKLFCTLGGNIRTVAIESDFDACQALVKQAFDDAELRQAIGLNSANSINISRLL
                     AQICYYFEAVAQLPKEKRDNVVVSVPSGNFGNLTAGLIAKTLGLPIKRFIASTNANDT
                     VPRYLQSGKWEPNATVATLSNAMDVSRPNNWPRVEELFKRNGWSLSELGSAALNDAET
                     EAALKAQYAEGYLCEPHGAIAYQSLKDQLQQGETGIFLCTAHPAKFKESVEHILAIEL
                     PLPEALDKHNKLPLLSDEMAADFATLRAYLLK"
     gene            complement(4598..5332)
                     /locus_tag="PXE26_001000"
     CDS             complement(4598..5332)
                     /locus_tag="PXE26_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HDL5593602.1"
                     /translation="MSFKDMTGQKVPSVTFRTRQNDAWVDVTTDELFNNKTVVVFSLP
                     GAFTPTCSSTHLPRYNELACEFKALGVDDIICMSVNDTFVMNAWKADQESENITVIPD
                     GNGEFTEGMGLLVDKNDLGFGKRSWRYSMLVKNGIVEKMFIEPQEPGDPFKVSDADTM
                     IKYLSPNWTAKESVSIITKPGCLFCAKAKALLKEQGYTFEEIVLGRDASTISVRAITG
                     KTSVPQVFIGGKYIGGSDELAAYFAK"
     gene            5447..6331
                     /gene="oxyR"
                     /locus_tag="PXE26_001001"
     CDS             5447..6331
                     /gene="oxyR"
                     /locus_tag="PXE26_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator OxyR"
                     /protein_id="HDL5593603.1"
                     /translation="MNIRDLEYLIALAEHKHFRRAAESCNVSQPTLSGQIRKLEGELG
                     TILLERTSRKVLFTQAGLTLVEQAKVVLREVKILKEMASNQGKEMSGPLHVGVIPTLG
                     PYISPIIVPALKAEFADLELYIYELQTNQLLDQLESGQLDCGIISFVKESESFIEVPI
                     FNEEMYLVVPEQHEWAALKKFDMNLLKNRELLFLDSGHCLRTNTLDYCLSIGAKENPH
                     FKATNLETLRNMVAANVGLALIPKLAAKPIKGVHYIPLENPKPFRAVGMVYRPGSPLR
                     ARYERLAQAITKIMQSEA"
     gene            6334..6966
                     /gene="fabR"
                     /locus_tag="PXE26_001002"
     CDS             6334..6966
                     /gene="fabR"
                     /locus_tag="PXE26_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor FabR"
                     /protein_id="HDL5593604.1"
                     /translation="MANGMSVRAIQKEKTRRALVEAAFNQLSSEKNFSNLSLREVARE
                     AGVAPTSFYRHFKDMDELGLAMVDESGLLLRQLMRQARKRIANGGSVVVVSVETFFEL
                     IADRPNVFQLLLRESSGTSQAFRTAASREIQHFVAELADYIMSKDNHSNRELAYIQSE
                     GLVTLVFTAGSHALDMNNQEREKLKQRVIMQLRMLIRGSTYYANKQASST"
     gene            complement(6993..7292)
                     /locus_tag="PXE26_001003"
     CDS             complement(6993..7292)
                     /locus_tag="PXE26_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4298 domain-containing protein"
                     /protein_id="HDL5593605.1"
                     /translation="MKKADIQKMQDCYNQWVELLPELEKGIEQWKRASALLEPLSRFY
                     ASPEWRELHDSFDEQLDTKGNYSILSEDALWNALSEHHQLALEWLKLSTAYITKE"
     gene            complement(7381..11196)
                     /locus_tag="PXE26_001004"
     CDS             complement(7381..11196)
                     /locus_tag="PXE26_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL5593606.1"
                     /translation="MKGSGLATVGAPETGDNGQTIYTVDVAKAGAPTVTRGNVADAIN
                     NSEKTSSVVAGSKAVTVKAGKEDDKGNTEYTVDVATDKSIGRDNDGNMTVNTDNVTIV
                     KDPTTGEVKANTTTLNNSPEGKVTEPTGDDAKKLVTAGDIANAINNSGFNVTAGDGVD
                     GGETKGKKTQLIKPSETVTFDAGKNMTLTQADGKFTYTTKDNVAFNSIDMSNGKPDTT
                     GSITNLKSGVGGTFADKAAPTDAERKAIADNINNATGDTLNNAVNVGDVQAAMKAATT
                     KVEGDKGVTVTSKTNDDGSTTYTVEAKTDGTTIKVNDKGEITANTSELTNNPDGKVEE
                     PTEPNALVTAKTVADAINNAGFNIKANGDEKSLVKTGDTVQFLNGKNIEITRDGNNIT
                     VSTAKNVNFDSVQFGNEGPKITNNGGNINVGDKDGNAVKVTNVAAGDVNADSKDAVNG
                     SQLYTFAMASREEVKSTDKSVTVNTTKNADGANVFDLSVNTDDVTIVKDPTTGAIKAN
                     TTALNDANNDGRIDEPTADDAKKLVTAGDITNAINNSGFTLKTSAVEGGEKLSGGDEL
                     INPGKAVEMVAGKNLTVKQEADGKVIYATKDDVKFSSVTSNTVTVPTDEADPANNPIT
                     INKDGINAGNKAISNVASNLIPVTADDKVQPADNNPTNLADKLSNAATLGDVLNAGWN
                     LQGNGKAVDTVVHNDTVDFINGKGTTVTVENKDGKNTIKVDSPIEFVNQDPTDSSTPS
                     NTAKFTGEAPVQLGNVASSVRNEDGSTPEGKDRAEAIKNAEGDKLNNVVNLGDLQAAT
                     NAATTKVGGNRGVTITPSTNADGSTTYNVEAKTDGTTIKVDNEGNITANTSELGNNED
                     GTVKAPTQPNALLIAQTVADAVNNAGFNIKSAGNKAAGDQAATKLVKTGEEVVFEAGD
                     NLTVKRDGNQFTFATAKDVSFNSVQFSENGPKITNDGDNIKVGDKDGKPTKITNVADG
                     DISPVSTDVINGKQLNNYAKVNGNNIGTDEDGSINIVNGNGTTITSDKAGEVKVNVNI
                     TDLTVADNGKINVQDPNGTGSRFVNATTVANAVNNVSWNVDSKAVGTGAVEGDKAPAK
                     VKAGSTVSVNAGNNIKVTRKGSDVTVAVSDTPEFTSKTGDTLVNNNGVTINNGSAGKA
                     VSLTKDGLNNGGNRITNVKAGEADTDAVNVGQLKGAVNHLNNKIHRNNREARAGIAGS
                     NAAAALPQVYIPGKSMVAAAGGTFKGENALAVGYSRSSDNGKLILKLQGNANSRGDFG
                     GGVGVGYQW"
     gene            complement(11159..11644)
                     /locus_tag="PXE26_001005"
     CDS             complement(11159..11644)
                     /locus_tag="PXE26_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593607.1"
                     /translation="MDTGSITVDNTTGAVTTPAEEDKVATTKTVSEAIQKAGWNAKSG
                     GNKADGDQEAAELINPGEKVIFAAGDNLKVKRVGTIFTYETAKDVKFDSVTFGDNGPK
                     ITNKDGNVNIAGNDGNPTKITGVKAGEADTDAVNVSQLKQAAASQNRSERFRFSNCWC
                     T"
     gene            complement(11653..13812)
                     /locus_tag="PXE26_001006"
     CDS             complement(11653..13812)
                     /locus_tag="PXE26_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5593608.1"
                     /translation="MGARATSANAIALGTDTAATGNRATAFGAGALATGNRSTVMGWR
                     SAASGTRSFAMGSGAMGDKSVANATYSLALGSSANANATSTATRGTAIGYNATVSGVN
                     ATALGVSAVSSNQSTVAIGDSAKASAGFAIALGSGANVALNNSVALGSNSTVSNAVAV
                     PSATVNGITYSGFAANTTAAGNVVSVGSNTIKRQIQNVAAGQISATSTDAINSSQLYM
                     AMNATGNLANSTKNILGGNATVKPDGSVTYTNIGGTNKNTIEEALKAVKTEVVAGSNV
                     NITNATGANGQTIYTVNAYNTTANSSSPDYITVTGKAATAANTTNYEIGLTKKAIDDF
                     TKDTQATVVSNDGTVTVKSTERNANGTVIYDLSVNIPAQASQIQYFSVNSTVPENQAN
                     DGAKSRNSIAIGPNATATGGEQAAVALGTNSNANGNGALSLGVATVSKGIQATAVGHS
                     ANATANGTTALGRQTNATAGDATAVGSNANATAEKASAFGVAANASANASLAVGANSI
                     ASAQSAVAVGTRANATAQFATALGMGAQATLNSSVALGSESVVRAATPTENATVGGIT
                     YNGFAGVNKDTNYVVSVGSAGKERQIQNVAAGQISATSTDAINGSQLYMAMNATSNLA
                     NSTANNFGGGSVVNPDGSVTQPKYNVTNAAGTQYGNTATNVGDAITNLNNYVNQGFNI
                     KDNAGETKGTVTPNESVQFVNGKGTVSNVTQEADGVK"
     gene            complement(14041..14241)
                     /locus_tag="PXE26_001007"
     CDS             complement(14041..14241)
                     /locus_tag="PXE26_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ESPR domain-containing protein"
                     /protein_id="HDL5593609.1"
                     /translation="MNQIFKVIWNQATQSWVAVSELQRAKGKTKSVSSASKATLALLA
                     GASAVLGANDAVAVVSYRFNNK"
     gene            14605..15759
                     /locus_tag="PXE26_001008"
     CDS             14605..15759
                     /locus_tag="PXE26_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDL5593610.1"
                     /translation="MNQFFPLIFSLTLFSGVTLALEKAPRTMPTEGINKPLLGQILFF
                     DNMLSHNGSQNCSSCHNPDYAFIDNRTTPAKGVVSQGDTPTKFGKRNSPTMLYAKYSP
                     EFHFDEQSQEYIGGQFWDGRAKNLAEQAGMPPIDPNEMGMPNKLEVAKRLYNVPMYQR
                     FLGQFYGEKVWESYESVYAAMEDAIATFQQENKLLAPFDSKYDLFLKGEVQLTALEEK
                     GRALFFNKAQTNCSSCHQLQSAANHQEETFSNYHYYNVGVPGNPDLIAVNGFAPDFVD
                     LGLFENPNVKGDETQKGKFKTPTLRNVAVTALYMHNGVFKELKTVLLFLDSYNNPERK
                     INPETGTAWQQAEFEPTIAHQKLKAKPLSDEEIDALEAFLKTLTDERYRK"
     gene            complement(15807..16796)
                     /locus_tag="PXE26_001009"
     CDS             complement(15807..16796)
                     /locus_tag="PXE26_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL5593611.1"
                     /translation="MNDLIIYNTEDGKSNVALLVVENEAWLTQNQLAELFDTSVQNIS
                     EHIKNILKDKELDENSVIKDYLITAQDGKNYQVKHYSLEMILAIGFRVRSPRAVQFRK
                     WANSTLRTYLEKGFLIDSERLKNPQGRLDYFDELLEQIREIRASELRFYQKVRELFKL
                     SSDYDKTDKNTQMFFAETQNKLIYAITKHTAAELICQRADATKMNMGLTSWKGKVVRK
                     GDIVIAKNYLDNNELDSLNRLVMIFLESAELRVKNNQDLTLGFWRRNVDMLIEFNGFS
                     VLGNGGTITHKQMESFVREQYEKFDIQRKCLKQKEADWEDLQALEKLESELTR"
     gene            complement(16956..18320)
                     /gene="mpl"
                     /locus_tag="PXE26_001010"
     CDS             complement(16956..18320)
                     /gene="mpl"
                     /locus_tag="PXE26_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HDL5593612.1"
                     /translation="MKKHIHILGICGTFMGGVAMIARELGYKVTGSDTNVYPPMSTFL
                     AAHGIEIIPNYDVAQLQPAPDLVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLL
                     KDKWVLAVSGTHGKTTTTGMLAWILDQNGIDTGFLIGGVAGNFGISARAGNSPFFVIE
                     ADEYDSAFFDKRSKFVHYTPKTLIINNMEFDHADIFDDLKAIQRQFHHLVRTMPQSGC
                     ILSAIADQNVQDTLKMGSYSQLQFIGEQNEWFAKPLNADCSQFEVFHLGVKQGEVHWS
                     IIGKHNMHNALMAIAAAHHAGVEVQGACEALGKFVNANRRLEVKGEVNGITVYDDFAH
                     HPTAIEATIDALRGKVGKNQRILAVLEPRSNTMKMGVHKDEIAPSLHDAEAVFVYQPD
                     IIAWSVSEITNVLSQPAYWSANIDDLVDLVVKEAKPTDHILVMSNGAFGGIHQKLLAK
                     LADK"
BASE COUNT         5264 a         4150 c         3410 g         5624 t
ORIGIN      
        1 ttccagcata gttcaaaatt acaaggaggc tgccgttctg caatttcata taaataatta
       61 acagaatttt ggattgctat agcaaaccca tgcttcactg ctttatgatc atatttcgta
      121 tgtacatttt tcataaaaac ctcaatttgt taaagaaacc tactgttaag taggtttctt
      181 atttactaca aattaattat ggctaaaaga ccaacctgcg ataacagatt taatttttaa
      241 tagctttttt gaatctactt ttttcataaa aaaatcctca tatattgatt aatagatagg
      301 tttgtgcatt gcacatctct atatgtcctt caaaaaaaac aaaacatcaa caaaaaatta
      361 acaaaaccat aatattttta ttgattttgt gaagcatgtc acattttatg atttaattat
      421 aggctcacta ccttacactc ttgagctgta atatactatt taactgcggt aataactgca
      481 cgatcagtct gagttgttgt atcaacacta aggcgaggtc attttgcttt tgctgatttt
      541 cttgctcaaa ttgggtgagg tcttggtcga tagcggtcaa tttttccgat aattttgcaa
      601 atgaacggct ctctgaggca atttgcccga tgatgtttgc cacctctctg gcgtgtgaga
      661 agaacattgc ggaaaaatcc acttgttgat taatctctcg gctagcaata cggtaagccc
      721 ctaaggtgga aatataaccc agcaaggtgt aagcaatacc taacaatttt ggggcgaagg
      781 ttaaatcgtt cgcatatttt tgtggttcgc tgtacatatt ggtaatcgca ttactcagtg
      841 ccgataaatg gttatgcaca tcacggcggg caatacggta aggcagttgc tcgttataac
      901 caaactgcaa ctgggcgata atatggcgta aatattgccc actggctttc aagccgttat
      961 gtaagttacg ttgtaaattt aaatacttcc aatccggcca taagaatgcc actgccagcc
     1021 acgcaatcgc tgtacctagt aaggtatcaa gcattcgcat taagatgccg ctttcaaggc
     1081 tcacgcctgc aatatcaagg cttatcatta ccaacacagt gatataaaag gttgaaaagc
     1141 cataatgtac caagcggaaa aaggtataaa gcgaaccggt cagtacgatt agcccaagct
     1201 gggcttcgag gctgagcgcc acgttaaaca gttcaaaaga gccaccaacc agcacgccga
     1261 aaattgtgcc gatcacacgc tgaatcagtc gggtcttagt agcagtgtaa ttcggttggc
     1321 agacaaaaat ggctgtgagt aaaatccagt agcctttgct atcaaagcct aaaatcggca
     1381 caatcgcact gcacaacagc accactatcg acaaccgaac ggcgtgtcga aacagttggg
     1441 attcaaaggt taaatgggct ttaattgctt ggctgatatt gcttaagccg gtaatatttt
     1501 cggcgatcaa gcggtgagat tttgtgaaat ttttacttaa cggttcaata tgctcaccac
     1561 tgcttgagcc ttgttcaatc tgggctagtt gccgctcaat attgcctaaa ttttctgcaa
     1621 tagcacgcca gcgataagca cttttcaagc cccgttcttg atgataattc aatgaattaa
     1681 gcaagccctg caaggctttt tcgccacgaa cgccgtgttc atatacttct ctatggcgta
     1741 acgacattgc aattttttga cacgccgcag cctgtaattc cagcacccgt tgaaagcgga
     1801 acattaaatc actgttactt aattgttgga acagttcgtg atattgataa tggctggaac
     1861 ttgcccgctc taaaatatct tgagcggtga aatagtaacg caacattcgc tgtgtccgtt
     1921 gctgcttgtg ctggcggctt aggcggtaga atagggcaac tctggtttta tcaaaggcag
     1981 ccatcacctc actattggct ttcgccaagg ctagttgttt ggcagctaaa tcgtcatcat
     2041 cagggtcaaa ataggcagat ttcgccagta aataatggct caacgcaagg taggcggacg
     2101 ctaaattctc ctgcacggtt cgattcggga aaatcaggta caccaaaata ccgaccaaac
     2161 catagagtaa ggtgccaagt aagatcatca ccacattgtg ataccacaat acttcgggcg
     2221 tataagccag gctgttataa accgccacaa tcagcgtgcc aaaagcaatg gtactatagc
     2281 gttgcccgat tgcccctaac attaccagca aaaaggtgca aaccaccgcc accggcacaa
     2341 acagccagcc caaatggagc gacacactcg ccccaatcga ggaaagcgag aacgccacta
     2401 ggctgataat cagatttttc gctcgtccga ttaggctgtt gtctaaatcc accaaaccgc
     2461 cggcgataat gcctaacatc aacggcatcg caaaatcaga aataccgagc tgccaaatgc
     2521 tgaccgccgc aatgtttagc gaaataaaca tcggcagggt tttaattaca ttttccgaaa
     2581 gccaactgtg ttgtagatat cttaaaaatt tattcatatt tgctcatttc gggcaggcac
     2641 aggacctgcc cctacctaca ctaccccaaa cgttctgcca aatagccatc ataatccggc
     2701 acattcacgc tgattgcttg attgaacaaa tccgcattta acagaaaatt agcggtggtt
     2761 tcgttaatcg ccaccggaat attccaaacg gtcgcaatcc gcatcagggc tttcacatca
     2821 ggatcgtgcg gagcggcatt catcggatcc caaaagaaca ccagcagatc aattttcttt
     2881 tctgcgatca gcccgcctaa ttgctgatcg ccccccatcg ggccgcttaa caatgaagta
     2941 atttcaagcc ctgtttctct ggcgagcaaa tgcccggtag tgccggtggc atatagctta
     3001 tgcgaggcaa gttgggcttg atgagtttgt gtccaacgaa ttaaatcttg tttacagcta
     3061 tcgtgagcca ctaaggcaat ctgtttttgt tttgcgatgg ttctgacggt ggttttcatt
     3121 tttagctcct ttgcaaaatt tttcacaaat cataccgctt atttttcgct tttgcattga
     3181 ctaatcacgg cttatggcta aaatcaggta aaaattcgca ttttaaaaca aaggattaac
     3241 cgcaatgaac ttatacaaca tcaaacaccc tgaagaacaa gtcaatttcg cccaagcggt
     3301 acgccaaggc ttaggcaaaa atcaagggct atttttccct gaagtgttac ctaaattaga
     3361 tagcattgat gaattattgg atttaccttt ggttaaacgc agccaaaaaa ttctttcagc
     3421 cttaatcggc gaagagttac cgcaagaaac cttaaatgca atggtaaaaa atgcgttcac
     3481 tttcccggca ccgcttgcca aagtcaatga tgatatttat gcgttagaat tatttcacgg
     3541 tccgacttta gccttcaaag attttggtgg gcgctttatg gctcaagcct tagccaatgt
     3601 acgaggagac ggcaaaatta ctattttaac cgctacctca ggtgacaccg gtgcggcggt
     3661 ggctcatgct ttctatggtt tggaaaatat caacgtggtc attctttacc cgaaaggcaa
     3721 aatcagccca ttacaagaaa aattattctg taccttaggc ggtaatattc gcactgttgc
     3781 gattgaatcc gactttgatg cttgccaagc cttagtgaaa caagcctttg atgatgccga
     3841 gctacgccaa gcgattggtt taaattccgc aaattccatc aacattagcc gtttactggc
     3901 tcaaatttgc tactactttg aagcagttgc tcagttacca aaagaaaaac gagataacgt
     3961 agtggtttca gtaccaagcg gtaatttcgg taacttaacc gccggcttaa ttgccaaaac
     4021 attaggttta ccgattaaac gttttattgc ctcaaccaat gccaatgaca ccgtgccacg
     4081 ctatttacaa tcaggcaaat gggaaccaaa cgcaaccgtt gcaacccttt ctaatgcaat
     4141 ggacgtaagc cgcccgaaca actggccacg agttgaagaa ttatttaaac gcaatggctg
     4201 gagtttgtct gaattgggtt ctgccgcatt aaacgatgcc gaaaccgaag cggctttgaa
     4261 agctcaatat gcagaaggtt atctgtgtga gcctcacggt gctattgctt accaaagctt
     4321 gaaagatcag ctacaacaag gcgaaaccgg tattttctta tgcaccgctc acccggcaaa
     4381 attcaaagag tcggtggaac acattttagc gattgaattg ccgttaccgg aagcattaga
     4441 taagcacaac aaactgccac tgttatccga tgaaatggca gcagattttg caacattgcg
     4501 tgcatatttg ttgaaataaa tattcaataa tagaaaaggg attaagtatt aaacttaatc
     4561 cctcttttta tgcattacaa gcggttatat ttgcctatta ttttgcaaaa taagcagcta
     4621 actcatcact accgccaata tatttaccgc cgataaatac ttgtggcaca gaggttttac
     4681 ctgtaattgc tcgtacagaa attgtgcttg catcacgacc taacacaatc tcctcaaaag
     4741 tatagccttg ctcttttaat aatgcttttg cttttgcaca gaacaggcaa cccggtttag
     4801 tgataatcga aacagactct ttagctgtcc aatttggact taaatattta atcattgtat
     4861 cggcatctga tactttaaac ggatcgcccg gttcttgtgg ctcaataaac attttttcca
     4921 caataccgtt tttcaccagc atcgaataac gccaagaacg tttaccaaac ccaaggtcat
     4981 ttttatcaac taatagcccc ataccttctg tgaactcacc attaccatca ggaataacag
     5041 taatattttc agattcttga tctgctttcc aagcgttcat tacaaaggta tcattaactg
     5101 acatacagat gatatcatct acccctaatg ccttaaattc acaagctaat tcattatagc
     5161 gaggcaaatg tgttgatgaa caagtcggtg taaatgctcc gggtaatgaa aacacaacca
     5221 ccgttttgtt attaaataac tcatcggttg tgacatcaac ccaagcatcg ttttgacgtg
     5281 tacgaaatgt tacactgggt actttctgac ccgtcatatc tttaaaagac atattaatgt
     5341 tctcctatag aattatatat tacaaaaatc ttaggcatta tactcacaaa tatggcataa
     5401 ttcagcctat cagaacaata ggaaaaattt aaattggagg aatcaagtga atattcgaga
     5461 tttagaatac cttattgcac ttgcagaaca taagcatttc cgtcgtgcag cagaatcttg
     5521 taatgttagc caacctactt taagcgggca aattcgcaaa ttagaaggcg aactaggcac
     5581 tattctgctt gaaagaacca gtcgcaaagt cctctttacg caagcaggct taacattagt
     5641 tgaacaagcc aaggtagttt tacgtgaagt aaaaattcta aaagaaatgg caagcaacca
     5701 aggtaaagag atgtctggcc cgcttcatgt tggtgtaatc ccaaccttgg ggccttacat
     5761 ttcgccaatt attgtgcctg cattaaaagc agaatttgca gatttagagc tgtatattta
     5821 cgaattacaa accaaccaat tattagatca acttgaatcc ggccagcttg attgtggcat
     5881 tatctcattt gtaaaagaga gtgaatcttt tattgaagtg cctatcttta atgaagaaat
     5941 gtacttggta gttccagaac aacacgaatg ggcagcgctt aaaaaattcg atatgaattt
     6001 attaaaaaac cgtgagttgc tctttttaga cagtggccat tgtttacgca ctaatacgct
     6061 agactattgt ctatccattg gagcaaaaga aaatccacac tttaaagcta ccaaccttga
     6121 aaccttacgc aatatggtag cagcaaatgt tggcctagca ttgattccta aattagccgc
     6181 taaaccgatt aaaggagtac attatattcc acttgaaaac ccgaaaccgt ttcgagctgt
     6241 gggaatggtg tatcgaccag gttcaccatt acgcgcccgc tatgagcgtt tagctcaagc
     6301 cattactaaa attatgcaat ccgaggcgta aaaatggcaa acggtatgag tgtgcgcgca
     6361 attcagaaag aaaaaacacg cagagcatta gtagaagccg cctttaatca attaagctca
     6421 gaaaaaaatt tctctaatct cagtttgcgt gaagttgcac gtgaagctgg agtcgcaccg
     6481 acttcgtttt accgccactt taaagatatg gacgaactag gcttagcaat ggtggacgaa
     6541 tccgggctac tattacgcca attaatgagg caagctcgaa aacgaattgc aaatggcgga
     6601 agtgttgtcg tggtttcagt ggaaacattc ttcgaactga ttgccgaccg ccctaacgtt
     6661 ttccagctat tactacgcga aagctccggt acatcgcaag cgtttagaac cgcagcatca
     6721 cgcgaaattc aacattttgt agctgaattg gcggactata ttatgagcaa agataatcac
     6781 agtaaccgag aacttgctta tattcaatcg gaaggtttag tcacgctagt atttactgcc
     6841 ggttctcatg ctttggatat gaacaatcaa gaacgggaaa aactaaagca acgtgtcatt
     6901 atgcagctaa gaatgctgat tcgtggctcc acctattatg ccaataaaca agcttcatca
     6961 acataaaaaa acagacgcct aagcgtctgt ttttattctt tcgtaatata tgcagtcgat
     7021 agctttaacc attctagtgc taattgatga tgttcagata acgcattcca taacgcatct
     7081 tctgacaaga tactataatt gcctttagta tctaactgtt catcaaaact atcatgtaat
     7141 tcacgccatt ccgggctagc ataaaaccga cttaagggtt ccaaaagtgc agaagctcgt
     7201 ttccattgct caatcccctt ttccaattct ggtaatagct ctacccattg gttataacaa
     7261 tcctgcattt tctgaatatc tgcttttttc attctttacc gcttacacca taaattttag
     7321 cctcaatata acataaaaat ccccttccga agaaggggat ttcaactcaa ttaggctaaa
     7381 ttaccactgg tatccaacgc ctacaccgcc accaaagtcg cctcggctat tcgcattacc
     7441 ttgtaatttc aagataagct taccgttatc acttgaacgt gaataaccta ctgcaagcgc
     7501 gttttcacct ttaaatgtac cacctgctgc agccaccata gatttacctg gaatgtaaac
     7561 ctgcggtaac gctgctgctg catttgaacc ggcaatacca gcacgggctt cacggttatt
     7621 acgatggatc ttgttattta agtgattaac agcacctttt aactgaccaa cattaacagc
     7681 atcggtatct gcctcacctg ctttaacatt agtaatacgg ttaccaccat tatttaagcc
     7741 atctttcgtt aagcttaccg cttttcctgc agagccatta ttaatggtta cgccattatt
     7801 gttcaccaat gtatcaccag tcttgctagt aaattcaggg gtatctgaaa cggctacagt
     7861 tacatcagaa cctttacgtg tcactttgat attattacct gcattcacgc tcactgtact
     7921 acctgctttt actttcgcag gggctttatc cccttcaacc gcacctgtac caactgcttt
     7981 agaatctacg ttccagctta cgttgtttac ggcatttgct actgttgttg cattcacaaa
     8041 gcgtgaaccg gtaccgttag gatcttgaac attgattttg ccgttatcag caacggttaa
     8101 atctgtgatg tttacgttca ctttcacctc accagcctta tcactggtaa tagttgtacc
     8161 attaccattt acgatattga tagaaccatc ttcatcagta ccaatgttat taccattcac
     8221 tttcgcatag ttgttcagct gtttaccgtt gataacatct gtgcttactg ggctaatatc
     8281 gccatctgct acattagtga tcttagttgg tttaccgtct ttatcaccga ctttgatgtt
     8341 atcaccatca ttagtgattt tcggaccatt ctcactgaac tgtacgctat tgaagctcac
     8401 atcttttgct gtcgcaaaag taaattgatt accatcacgt ttaacagtta agttatcacc
     8461 tgcttcaaac acaacttctt cgcccgtttt cactagctta gtcgcagctt ggtcaccggc
     8521 agccttatta cctgcagatt taatattaaa gcctgcatta ttcactgcat ctgcaacagt
     8581 ttgagcaatc aataacgcat ttggctgagt tggtgctttc accgtaccat cttcgttgtt
     8641 acctaactca ctggtatttg cagtgatgtt accttcatta tctactttaa tagtagtacc
     8701 gtcagttttc gcttcaacgt tataagtagt tgaaccatca gcattcgtgc taggtgtgat
     8761 agttacacct cggttaccgc ccactttcgt agtagctgca ttagttgccg cttgtaaatc
     8821 acctaagttc actacgttgt ttagcttgtc gccttcagca tttttaatcg cttctgcacg
     8881 gtctttaccc tctggggttg agccatcttc gttacgaaca ctacttgcca cattgcctaa
     8941 ttgaacaggg gcttcacctg tgaatttagc cgtattgctt ggcgttgagc tatcagtagg
     9001 atcttggttt acaaactcaa tcgggctatc tactttaatc gtattcttac cgtctttgtt
     9061 ttcaaccgtg accgttgtac ctttaccgtt aataaaatca accgtgtcat tatgtaccac
     9121 agtatcaacc gctttgccgt taccttgtaa attccagcct gcatttaata catcacctaa
     9181 tgttgctgca ttacttaact tatcagctaa gttggttgga ttattgtctg ctggttgaac
     9241 cttatcatct gcagtcacag gtatcagatt agacgcaaca ttgctaatcg ctttattacc
     9301 tgcattgata ccatctttat tgatagtaat tggattattt gcaggatctg cttcatcagt
     9361 tggtacagtt acagtgttag aggttacgct gctaaactta acatcatctt tagtcgcata
     9421 aatgacttta ccatcagctt cttgcttcac agttaagttt ttacctgcaa ccatttcaac
     9481 tgctttaccc ggattaatca gttcatcacc acctgaaagc ttctctccac cttctacagc
     9541 cgacgttttc aacgtaaagc ctgagttatt gatggcgttg gtaatatcac ctgctgtcac
     9601 taatttctta gcatcatcag cggttggttc atcaattcta ccgtcattat ttgcatcatt
     9661 taatgccgta gtgttagcct tgatcgcacc ggttgtagga tcttttacaa ttgttacatc
     9721 gtccgtattc acagaaagat cgaacacatt cgcgccatca gcattttttg tcgtgttaac
     9781 cgtaactgat ttatcagtcg acttcacttc ttcacgagat gccatagcga aagtataaag
     9841 ctgactacca tttactgcat ctttactatc tgcatttacg tcaccggcag ctacattagt
     9901 tactttgact gcattaccgt ctttgtcacc aacattgata ttaccaccat tgttagtaat
     9961 cttaggacct tcatttccga actgtacact atcaaaattc acattttttg cagttgaaac
    10021 agtaatgtta ttcccatcac gggtaatctc aatgttttta ccatttaaga actgaaccgt
    10081 atcacctgtt ttcaccaggc tcttctcgtc accgtttgct ttaatgttaa aacctgcatt
    10141 gttaattgca tctgcaacgg ttttagctgt tactaatgca tttggttctg taggctcttc
    10201 cactttacca tcagggttat ttgttaactc gctggtgttt gccgtgattt cgcccttatc
    10261 gtttacctta atggttgtac catccgtttt tgcttcaacg gtataagtgg ttgagccgtc
    10321 atcgttagtt ttagatgtta cagtaacacc tttatcacct tccactttgg tggttgctgc
    10381 tttcattgct gcttgtacat cacccacatt cacagcatta ttcaacgtat cacctgttgc
    10441 gttgttaata ttatccgcaa tcgctttacg ctctgcatct gttggtgctg ctttatctgc
    10501 aaatgtacca cccacgccgc tcttcagatt agtgattgag cctgttgtat ctggtttacc
    10561 attgctcata tcaatgctgt tgaatgcaac attatctttc gttgtgtaag tgaatttacc
    10621 gtcagcttgg gtaagtgtca tatttttacc cgcatcaaag gtaactgttt cacttggctt
    10681 gattagctgt gttttcttac ctttggtttc accaccatca acaccatcac ctgctgttac
    10741 attaaagcct gaattattga ttgcattagc aatatcacct gccgtcacta atttcttagc
    10801 atcgtcacct gtaggctcag taactttacc ttcaggagaa ttatttaatg ttgtggtatt
    10861 cgctttaact tcgcctgttg tcggatcttt cacgatagta acgttgtcag tattcactgt
    10921 catattaccg tcattatcac gaccgataga tttatccgtt gcaacatcta ccgtatattc
    10981 agtattgcct ttatcatctt cctttccggc tttaacagtt acggctttag aaccagctac
    11041 tacagatgag gttttctctg aattattaat tgcatcagcc acattaccac gagttactgt
    11101 aggagcacct gctttcgcta catctaccgt atagattgtt tgaccattat cacctgtttc
    11161 aggtgcacca acagttgcta aacctgaacc tttcacttcg gttttgtgac gctgctgctt
    11221 gttttaactg acttacattc accgcatcag tatcagcttc acctgctttc acgcctgtaa
    11281 ttttggttgg attaccatca ttacctgcaa tattaacatt accatcttta ttcgtgattt
    11341 tcgggccatt atcaccaaat gttacgctat caaatttcac atctttcgct gtttcgtacg
    11401 tgaatatagt gccaacacgt ttaactttta agttatcgcc tgctgcaaaa atcacttttt
    11461 cgcccggatt aatcaactct gctgcttctt gatcaccatc agctttattg ccaccagatt
    11521 ttgcattcca acctgctttt tgaatcgctt cagaaactgt ttttgtagtt gcaactttat
    11581 cttcttctgc aggtgtagtt actgcacctg ttgtgttatc aaccgtgata gaaccggtat
    11641 ccacatcaaa ggttacttta cgccatcagc ttcttgtgta acatttgaaa ctgtaccttt
    11701 accgtttaca aattgtacag attcatttgg ggtcactgtg cctttggttt cacccgcatt
    11761 atctttaata ttgaaacctt ggtttacata gttatttaag ttcgtaattg catcgccaac
    11821 gtttgttgca gtattaccat actgagttcc agctgcattc gttacattat atttaggctg
    11881 agtcacagag ccatccggat tcacaacaga accgccacca aaattatttg cagttgaatt
    11941 tgcaaggtta ctggttgcat tcattgccat ataaagttgt gaaccattaa tcgcatcggt
    12001 tgatgtagca gaaatctgac ccgctgccac attttggatt tgacgctctt tacctgcaga
    12061 gcctacagaa acaacatagt tagtatcttt atttaccccg gcaaagccat tataagtaat
    12121 accccctacc gttgcatttt cagttggtgt tgctgccctt acgactgatt cgctacccaa
    12181 agcaacagaa ctattcagag tagcttgagc tcccatacct aatgctgtag caaattgagc
    12241 tgttgcatta gcacgtgtac caacagccac tgctgattgt gctgaggcaa ttgaatttgc
    12301 acctacggct aaagaggcat ttgcactcgc atttgctgca acaccaaagg cagaagcttt
    12361 ttcagccgtt gcattagcat tagaacctac cgctgtagca tcacctgctg tcgcatttgt
    12421 ttggcgacca agtgcggttg taccattagc cgttgcattt gctgaatgac caactgccgt
    12481 agcttgaata ccttttgaaa ccgtagcaac acctaaagat aacgctccgt taccatttgc
    12541 atttgagttt gtgcctaatg ctactgccgc ttgctctcca cctgttgccg ttgcattcgg
    12601 gccgatcgca attgagtttc tgctcttcgc gccatcatta gcttgattct caggtacggt
    12661 tgaattcaca gagaaatatt gaatttggct tgcttgcgca ggaatattga cagaaagatc
    12721 ataaataacc gtgccatttg catttctctc tgtacttttt acagttactg taccatcgtt
    12781 tgaaacaaca gtagcttggg tatctttcgt aaagtcatca atggctttct tagttaaacc
    12841 aatttcatag ttagttgtat tcgcagcagt tgcagcttta cctgttacag taatgtaatc
    12901 agggctagaa gaatttgccg tggtgttata cgcatttact gtataaatag tttgcccatt
    12961 tgcaccggtt gcatttgtaa tattaacatt gctacctgca acaacttctg tttttaccgc
    13021 ttttaatgct tcttcaatcg tatttttatt tgttccacca atattagtat aggtaacaga
    13081 accatcaggc tttactgtag cattaccacc taaaatattt ttagttgaat tagcaaggtt
    13141 acctgttgcg ttcattgcca tataaagctg tgaactatta attgcatcgg ttgatgtagc
    13201 agaaatctga cccgctgcca cattttggat ttggcgtttg atcgtgtttg agccaacaga
    13261 aacaacattc cctgctgccg tagtattagc cgcaaagccg gaataagtaa taccatttac
    13321 cgtcgcagaa ggaactgcca cagcgttgga aacggttgaa ttactcccta aagcaaccga
    13381 attatttagc gctacattag cacctgagcc taaggcaata gcaaaaccgg cacttgcttt
    13441 agcactatca ccaattgcaa ccgtagattg gttggaagat actgcactta cccctaaagc
    13501 tgtcgcatta acacctgaaa ctgtcgcatt ataaccaatc gctgtacctc tagttgcagt
    13561 agaagttgca ttagcattag cacttgaacc taaagctaaa gaataagtag catttgcaac
    13621 agacttatcc cccattgcac ctgaacccat tgcaaatgaa cgagtgccac tagcggcaga
    13681 tctccatccc attactgttg aacggttacc agtagctaga gctcctgcac caaaagctgt
    13741 tgcacggtta cctgttgcag cagtatccgt acctaatgca atagcatttg ctgaagtcgc
    13801 tctagccccc ataccaatag caatagaagg aactaatgcc caattctgac cagtgttatt
    13861 gagactctct acaccaatat tatagtaatg taagaagtat cttctggatc cactaaattt
    13921 gttctatgcg ttgcattcgt atctgtacca attgcaatag tagatctgcc agttgagatt
    13981 gaatccgcac caatagcaat tgcgttctcc gatgatgcag ttgcttgtgt tgaaatataa
    14041 ttacttgttg ttgaacctat aagatacaac agccacagca tcattagctc ccaacacggc
    14101 actagctcca gccaataaag ccaatgttgc cttacttgca gaactaacag atttcgtttt
    14161 acctttcgct cgttgtaatt cagatactgc aacccaactt tgtgttgcct gattccaaat
    14221 aactttaaaa atttgattca taatcgaccc tatataaaaa taaaaaagat tacgtagaac
    14281 ctatgttcaa cataatcttc accaatataa aaaaccgcca cctatttaag tgaaataact
    14341 tacttataga ctcagaaatt taagtgcgcg tattttacgc tatttgtaat ataattcatc
    14401 ttctggagtg taaatttatt gtaaataata cgaggaatct aaccgcttgt tataacgcaa
    14461 aacaccttga cttaaatcaa gccactacct cattttgagg ggagatttat acgcagtgaa
    14521 attttaaaat aagctaaggt ttacggataa tcgttcaaca ctattgaatt atcactgtag
    14581 ttatcgttaa aaaggtatgc ttttatgaac caattcttcc ctctaatctt tagcttaact
    14641 ctattttccg gcgtaacttt ggcactagaa aaagcacctc gaactatgcc gacagaagga
    14701 ataaataagc ccctacttgg acaaattcta ttctttgaca atatgctgtc acacaacggt
    14761 tcacaaaact gctccagctg ccataatccg gattatgcct ttattgataa ccgcactact
    14821 ccggcaaaag gggtggtttc acaaggagat actccaacca aattcggcaa acgcaactcc
    14881 ccgaccatgc tttatgcgaa atactcgcct gagttccact ttgatgagca aagtcaagaa
    14941 tatatcggcg ggcagttctg ggacggacga gccaaaaatc tcgccgagca agccggtatg
    15001 ccgcctatcg acccaaatga aatgggaatg cctaacaaat tagaagtagc caaaagatta
    15061 tataatgtgc cgatgtatca gcgattttta gggcaatttt acggtgaaaa ggtatgggaa
    15121 agttatgaaa gcgtttatgc ggcaatggaa gatgcgattg cgacattcca acaagaaaac
    15181 aaacttctcg ctccatttga ttcaaaatat gatctatttt taaaaggcga ggtacaatta
    15241 actgcattgg aagaaaaagg cagagcttta tttttcaata aagctcaaac taattgtagt
    15301 agttgccacc aattacagag tgctgcaaac caccaagaag aaacctttag caactatcac
    15361 tattacaatg taggcgtacc cggtaaccca gacttgatag cggttaacgg cttcgcacca
    15421 gacttcgtcg atttaggctt atttgaaaac ccaaatgtta aaggtgatga aacacaaaaa
    15481 ggcaaattca aaaccccaac attgcgtaat gttgccgtga ctgcacttta tatgcacaac
    15541 ggtgtgttta aagaattaaa gactgttttg ctgtttttag acagctacaa taacccggag
    15601 cgaaaaatca accctgaaac cggcacggcg tggcaacaag cagaatttga acccactatc
    15661 gcccaccaaa aactcaaagc caaaccctta agcgatgaag aaattgatgc cctcgaagca
    15721 tttttaaaaa ccttgacgga tgagcggtat agaaaataag gctacaagcg gtaaaatttt
    15781 ggggaaattt taccgcttgc gtttaactac cgtgttagct cactttctaa cttttccaat
    15841 gcctgcaaat cttcccaatc tgcctctttc tgttttaaac atttacgctg aatatcaaat
    15901 ttttcgtatt gctctctgac aaagctttcc atttgtttat gcgtgattgt tccaccattt
    15961 cctaatacag aaaagccgtt aaactcaatc aacatatcta catttcttcg ccagaaacct
    16021 aacgtaagat cttggttgtt cttcacacgt aattcggcac tttcaagaaa gatcattacc
    16081 aagcgattta aagaatccag ctcattatta tctaaatagt ttttcgcaat cacaatatcg
    16141 cctttacgca cgacttttcc tttccagcta gttaatccca tattcatctt agtcgcatca
    16201 gcacgttgac aaatcaactc agcggcagtg tgtttggtta ttgcataaat gagcttattt
    16261 tgcgtttctg caaaaaacat ttgcgtattt ttatctgttt tgtcgtaatc gctagagagt
    16321 ttgaaaagct ctcgtacttt ttgatagaaa cgcaattcac ttgcccgaat ctcacgaatc
    16381 tgttcaagta attcatcgaa ataatctaaa cgaccctgcg gatttttcaa acgctcgcta
    16441 tcaattaaaa aacctttttc gagataagtg cgtaatgtgc tgtttgccca ttttctaaac
    16501 tgtactgctc ttgggctacg aactcgaaac cctatcgcca gaatcatttc aagtgaataa
    16561 tgttttactt gataattctt gccatcttga gcagttatca agtaatcctt gataactgaa
    16621 ttctcatcta actctttgtc ttttaagata tttttaatgt gttcggatat attttgcaca
    16681 gaggtgtcaa aaagttctgc aagttgattt tgtgtcagcc aagcttcatt ttcaaccact
    16741 aacaaggcta cattgctttt gccgtcttcc gtattataaa taattaaatc gttcatattt
    16801 tattctgttt attggtagag atattagtcg ctattttcaa taaaacatgt ataaatatcc
    16861 agaattgatt ttgaattttt cgatgcagat cacaaaaata gagagttata caaacaagcg
    16921 gtaaaatttt gtaaaaaatt taccgcttgt aaaggttact tatcagctaa tttggcaagt
    16981 agtttttgat gaataccgcc aaaggctccg ttgctcatca ctaagatgtg atcggtgggt
    17041 ttggcttctt tgacgactag atcgactaaa tcatcaatat ttgccgacca atacgccggt
    17101 tgcgataaca cattggtaat ctcgctcaca ctccacgcaa taatatcagg ctggtaaaca
    17161 aacactgctt cggcatcgtg taggcttggg gctatttcat ctttatggac acccattttc
    17221 attgtatttg aacgaggctc taacactgcc aaaatgcgtt gatttttgcc gactttacca
    17281 cgcagagcat caatagtcgc ttctatcgca gttgggtggt gagcgaaatc atcataaacg
    17341 gtaatgccgt ttacctcgcc tttcacttcc aaacggcggt tagcattcac aaacttgcct
    17401 aatgcctcgc aagccccttg cacttcaacc cctgcgtgat gagcggcggc aatcgccatc
    17461 agagcattat gcatattgtg cttgccgata atcgaccaat gcacctcgcc ttgtttaacg
    17521 cctaagtgaa acacctcaaa ctgtgagcaa tcggcattta acggtttagc aaaccattcg
    17581 ttctgttcgc caataaattg aagctggctg taactgccca tttttagtgt atcttgcacg
    17641 ttttgatcag cgattgccga caaaatacag ccactttgtg gcatcgtgcg aacaaggtgg
    17701 tggaactggc gttgaatcgc ttttaaatca tcaaaaatat cggcgtggtc aaattccata
    17761 ttattgataa tcagcgtttt cggggtgtaa tgcacaaatt tagaacgctt atcaaagaac
    17821 gcagaatcgt actcgtccgc ctcaatcacg aagaatggac tgttaccggc acgagccgaa
    17881 atgccgaaat taccggcaac accgccaatt aaaaagccgg tatcaatccc attttggtct
    17941 aaaatccacg ctaacattcc tgttgtggta gttttgccgt gcgtgccgga aaccgccagc
    18001 acccatttgt ctttaagcaa atgatcgtgc aaccattgcg ggccggaggt gtaattgagt
    18061 tggttgtcca acacatattc cacgcacgga ttaccacggc tcatcgcatt accaatcacc
    18121 actaaatcag gagccggttg cagttgagca acatcgtaat tcgggataat ttcaataccg
    18181 tgagcagcta aaaaggtact catcggtggg taaacattag tgtctgagcc ggtcacttta
    18241 tagccaagct cacgggcaat cattgccaca ccgcccataa aggtgccgca aatgcctaaa
    18301 atatggatat gttttttcat ctttttatat ttaaaatgtt agaatcatcc cctctcccct
    18361 tgtgggagag ggatagattt tttcttcgtg cagaagaaaa aatcagggag aggggtaagc
    18421 ggtcattttt aggcttaata ttgtaagc
//
LOCUS       DANLZD010000040        18317 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.040, whole genome shotgun sequence.
ACCESSION   DANLZD010000040 DANLZD010000000
VERSION     DANLZD010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18317
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.040"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(47..122)
                     /locus_tag="PXE26_001011"
     tRNA            complement(47..122)
                     /locus_tag="PXE26_001011"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(87..89),aa:Asn,seq:gtt)
     gene            complement(238..987)
                     /gene="moeB"
                     /locus_tag="PXE26_001012"
     CDS             complement(238..987)
                     /gene="moeB"
                     /locus_tag="PXE26_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HDL5593613.1"
                     /translation="MELTDHEMLRYNRQIILKSVDFDGQEKLKASRVLIVGLGGLGCA
                     ASQYLASAGVGHLTLVDFDLVSLSNLQRQILHTDATIGQPKVESAKARLAAINPNIQI
                     ETINQRCSDEQLAKLIANVDLVLDCTDNVTVRNQLNLQCFKQKRPLVSGSAIRFEGQV
                     SVFCYQEQEPCYECLSRLFGDATLSCVEAGVIAPIVGIIGSIQALEAIKVLLNIGRTL
                     SGKLLMIDGLHFSVREMALPKQNNCPVCTSY"
     gene            complement(1086..2315)
                     /gene="moeA"
                     /locus_tag="PXE26_001013"
     CDS             complement(1086..2315)
                     /gene="moeA"
                     /locus_tag="PXE26_001013"
                     /EC_number="2.10.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDL5593614.1"
                     /translation="MALLALSDALDNMLARLSTPKLVEQLPLNECANRVLAEDIFSPI
                     NVPNFDNSAMDGYAVRISDLAQNLTLNVAGKAFAGNPFNGEIKAGECVRIMTGALVPK
                     GVDAVVMQEETTLNSDGSVTFNHIPKLGSNIRRIGEDVKQGALVLKKGSLLNVASLPL
                     LASLGIASVPVFVKLKVAILSTGDELTSVGEPLSEGKIYDTNRFAVRLMLEKLNCEIL
                     DFGILPDDPILFEQTFRQAQQQADVLITSGGVSVGEADFTKDVLEKLGEIGFWKIAMK
                     PGKPFAFGKLEQAWFFGLPGNPVSALVTFYQLAQPALAKLSGLSTDKIAKLTQNLTAC
                     SAGKLKKAVGRQDFQRGYYYANEKGELEVRAVGTQGSHIFSAFNESNCFIVLEAERGN
                     VDAGEKVTIQPFNSLMY"
     gene            complement(2337..2954)
                     /locus_tag="PXE26_001014"
     CDS             complement(2337..2954)
                     /locus_tag="PXE26_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006719828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HDL5593615.1"
                     /translation="MFDSLAVQFVVLWAVIDPIGSVPVYLAKTIGLPIEARRKIALNA
                     VLIAAGILIFFLIGGQVLLESMQIPLPAFQAAGGLVLLLFALTMIFGESKPEQEMRIS
                     SNLNELAVYPLAVPSIASPGAMMAIVLLTDNHRFHIGDQIITAGIMLLVLFITYLLLL
                     AANRIQHLIGNAGAAIISRVMGLILAAIAVNNLLIGVRDFFVQIS"
     gene            complement(3022..4233)
                     /locus_tag="PXE26_001015"
     CDS             complement(3022..4233)
                     /locus_tag="PXE26_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDL5593616.1"
                     /translation="MISRQMQSLLKRLVAQFPAVLVTGARQVGKSTLLQHIGEGYQYI
                     TFDDPMLLELAKQESRLFFLNHQGKLILDEVQYVPEIFALLKLEIDKKQQNGLFLLSG
                     SQAFELMQNVSETLAGRIAILKLQGLSLREILGVKFDQPFLPTTDYLLAREQELKSPE
                     NIWQLIHKGDMPRLYAQEVDWEIYYRSYVATYIERDVRQLTNIASTTDFTRFMVSIAS
                     RSGELLNYSNIAQEVGVSNETIKRWVAILQTSGIIYLLQPYHNNHLKRAIKTPKVYFL
                     DTGLMAYLTKWLTPETIAQGAKSWQFFETFVVSQIIKSFHNQGIEPPIYFYRDTNQKE
                     IDLIIEYDRTLYPIEIKVTASPTKKMAKSFDLLNSVSSEWKLGQGAIINQYPTKLYLS
                     ENLVALPVSYL"
     gene            4430..6361
                     /locus_tag="PXE26_001016"
     CDS             4430..6361
                     /locus_tag="PXE26_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5593617.1"
                     /translation="MIFFTDLILKRGHSVLIDNSSVTIHTGQKVGLVGKNGCGKSSLF
                     ALLKNELQPEGGDVSLPKNWAISWVNQETPALAISALDYVIQGDREYTHLMAELDIAN
                     EKNDGNRIAIIHTQLDTIDAWTIQSRAATLLNGLGFSTEQLQLPVKSFSGGWRMRLNL
                     AQALICRSDLLLLDEPTNHLDLDAVIWLERWLSNYRGTLLLISHDRDFLDPIIDRVIH
                     IEHQKLNEYTGNYTSFEIQRATKIAQQNAAYQQQQRKVAHLQSFIDRFKAKATKAKQA
                     QSRIKALEKMELIAPAYADSPFEFEFRPPLALPSPLLMMEKVSAGYAEKTVLESVKLN
                     LVPGSRIGLLGRNGAGKSTLIKLLAGELPPQNGSIQLAKGVQLGYFAQHQVDTLRFDE
                     SPLWHLQKLAPEKTEQELRNYLGGFDFKGDKVVQAVKSFSGGEKARLVLALIVWQRPN
                     LLLLDEPTNHLDLEMRQALVDALTYYEGSLVVVSHDRHLLRSTVNEFYLVHDRKVEKF
                     KGDLDDYQKWLNEQNALANEPKSVLAKDSANSTACSSTNENSAAQRKEQKRLEAERRQ
                     QTAPLRKKITQLEKELEKATEKLNKLEAMLTESDIYEAENKAKLTETLAKQLEAKRLV
                     EEIEMQWLEAQEEFETMLR"
     gene            6640..6897
                     /locus_tag="PXE26_001017"
     CDS             6640..6897
                     /locus_tag="PXE26_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5593618.1"
                     /translation="MKNLRLSIHSSEHIWLRELFLKRRLELGLTQRTLGEKMGVLYSF
                     IGKVETGDRRLDIFEFIAYCKGLDLDPLSVLQEIEQQFPHK"
     gene            complement(6944..7564)
                     /locus_tag="PXE26_001018"
     CDS             complement(6944..7564)
                     /locus_tag="PXE26_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HDL5593619.1"
                     /translation="MKLWYSTTSPFARKALAVIKHHQLDDKVEMLRVTKAMDPNSPHN
                     QDNPLGRIPALQRNCGRWLFGSLLISEYLDQKGNNTPLLPKEGKPRWAVLALHNLADG
                     IMENTMPTLLQERMARPENEWWVSRHEQLMERNIRSFRQLEEALQEFGTELNLGTLTA
                     VALIDWWAFRLDKIGYDLAKNYPNLTAWAEEMNNKYAILAETKPSM"
     gene            complement(7566..8219)
                     /locus_tag="PXE26_001019"
     CDS             complement(7566..8219)
                     /locus_tag="PXE26_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01621 family pseudouridine synthase"
                     /protein_id="HDL5593620.1"
                     /translation="MTPTLPICYQHRDFIIINKPEGLSVHKDEAEIGLTELVARQLNV
                     KQVWLVHRLDKITSGLLILALNKEAAARFYHLFEQHKIYKTYWALSDKKPKKKQGRIV
                     GDMQKSRNGAWKLCHSKENPAVTQFISHSVEDSLRHFILQPKTGKTHQLRVAMKSLGS
                     PILGDKLYSGSQADRVYLHAYQLDFEYENEKISVQALPTSGHFWQKICKSNHIKHGE"
     gene            8268..8927
                     /locus_tag="PXE26_001020"
     CDS             8268..8927
                     /locus_tag="PXE26_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HDL5593621.1"
                     /translation="MAVTIYLVRHGRTVWNLEGRLQGSGDSALVEEGIIGAKKTGIAL
                     KHIPFTAAYSSMQKRAQDTANYILAENERSNIPHFHHKGLNEFDFGSWEGMKSVDLQE
                     NDEYWVMKRTPAEYLAKANGGERFEQLYQRVTQAFNQIAELHQNDGKVLIVSHGMTLT
                     LLTAVLKGIAWQDFRNEEKHSFVFNTAITKVEVENGKVTVLEFNNTDHLDNVPTSQYK
                     R"
     gene            complement(8964..10010)
                     /locus_tag="PXE26_001021"
     CDS             complement(8964..10010)
                     /locus_tag="PXE26_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01620 family protein"
                     /protein_id="HDL5593622.1"
                     /translation="MSKQIFNEEELKTTEHFEPKQEFDLENAIIEEEEKAVEAELIIE
                     ESLKPSRFWIRVLLATLALFGVAVIAQSIQWLIDTFQQREWIYFAFSIVFFIVSLLGV
                     GAIISEWRKLVYLRNHQKNQQMSNQLLLEQLPSNDGEQAVKFCENIANQLNHLPSIAQ
                     AEQLWKSELNEAYNAKEVLYLFSENVLKPIDKQVKQMISRNAAENAVIVAVSPLAIVD
                     VLLMAARNIALVNKITKAYGMELGYISRLKLFKMVLKNMVFAGATEIATDVGMDFFSQ
                     NLTAKLSLRAAQGIGVGLLTARLGIKAMEFCRPVAFQANEKPRISAIRQELLTSVKNT
                     VFAKTETKEKVFSD"
     gene            complement(10010..10963)
                     /gene="dusC"
                     /locus_tag="PXE26_001022"
     CDS             complement(10010..10963)
                     /gene="dusC"
                     /locus_tag="PXE26_001022"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(16) synthase DusC"
                     /protein_id="HDL5593623.1"
                     /translation="MNPIPNVILAPMQGVLDPFVRNLLTSVNDYDLCISEFVRVVDQR
                     LPKKTFYRLAPELYQGGLTDSGTPVRVQLLGQHPQWLAENAALAIELGSHGVDLNCGC
                     PSKTVNGSNGGASLLKDPELIYRATKAMREAVPSDKIVSVKVRLGWDSVSQCFEIADA
                     VEQGGANEITVHGRTKVDGYRAERINWQAIGEIQQRLSIPVIANGEIWDFESAKNCQK
                     ITACKALMMGRGALNTPNLSKVVKYNVPKMAWNEVLQLLFKYVQMENQFDTGFYHVAR
                     IKQWLRYLDKEYPQAVELFDILKTEHGYDGLKAHIEKAVEE"
     gene            complement(11041..11667)
                     /locus_tag="PXE26_001023"
     CDS             complement(11041..11667)
                     /locus_tag="PXE26_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2238 domain-containing protein"
                     /protein_id="HDL5593624.1"
                     /translation="MDSRSHIIPLFLAIVITVIAVWSGLNPTDRAVWYAEVIPIFIVF
                     ALLIITYPKFQFSGLAYFLMSLWLIMHLIGAKYTFANVPFEWANQFLTPILGEDRNHF
                     DRVAHYIIGFYSFPMAEWLLRKRKCGMGVAFFFSLFFIMSVAAAYEIIEWQYAVIEGG
                     NAGVEFLGSQGDIWDAQKDMLADTLGALTALMIYLIARPDLRIHDRHF"
     gene            complement(11667..12524)
                     /gene="djlA"
                     /locus_tag="PXE26_001024"
     CDS             complement(11667..12524)
                     /gene="djlA"
                     /locus_tag="PXE26_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlA"
                     /protein_id="HDL5593625.1"
                     /translation="MQFIGKIVGFFLGYQLFHGLFGGILGAFIGHLADKKLYELGSVR
                     SSLFGKNLTRQSLFTQTTFAVLGHIAKAKGRVTEADIELARALMARLKLDSAAQQLAQ
                     NAFTLGKEPDFPLRQVIQEFREACGARTDLLRFFVEVQMQAALQDGQLDVNEQQILFT
                     IAETMGMSRFQFEQMIAMIMAAQQFRNGGYYQQNGSYHQQSQGGYQGSYQQPAQPSIE
                     AAYTVLGVTAQDDQNTVKRAYRKLMNEHHPDKLAAKGLPDEMMELAKEKAQQIQAAYD
                     LICKVKEWK"
     gene            complement(12572..13282)
                     /locus_tag="PXE26_001025"
     CDS             complement(12572..13282)
                     /locus_tag="PXE26_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5593626.1"
                     /translation="MWKNRQLFFGYAENRLLLLSRSITGLLGILCGVYIIDHLVLSDV
                     DMIGKLTSFILIILSAIFLKERASLLQWILCLIAFIGALFIIKPAVDIRFMPYLVGVI
                     GSVFAAIAYLCLRLLAKTKKVESPNTIVFFFSAFSTLILLPFVAIDYVVLTNLQTIYL
                     VLAGVTSAVGQFCVTTAYKYAAAKDISIYSYASVLFSAILGLLFFEQYPDMLSWLGYA
                     IIFVSSWLMFVLTKKQSK"
     gene            complement(13297..13449)
                     /locus_tag="PXE26_001026"
     CDS             complement(13297..13449)
                     /locus_tag="PXE26_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593627.1"
                     /translation="MNFWNSLSPLFKAIFCVLLSALSFAIMAAFLRLSGDVPIAQKAI
                     FRNAQH"
     gene            complement(13518..14003)
                     /locus_tag="PXE26_001027"
     CDS             complement(13518..14003)
                     /locus_tag="PXE26_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDL5593628.1"
                     /translation="MKKFAKVLMVAVPAFALAACSSSSDDAAANAAANAAANAAANAA
                     GEFGGLTAEQLKAQYNTVYFGFDSYAVEGEYRQLLDAHAQLLAKTQGNVTIAGHADER
                     GTPEYNIALGQRRADAVKGYLAAKGANNTSTVSYGEEKPAVLGHSEADYAKNRRAVLE
                     Y"
     gene            complement(14030..15316)
                     /gene="tolB"
                     /locus_tag="PXE26_001028"
     CDS             complement(14030..15316)
                     /gene="tolB"
                     /locus_tag="PXE26_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HDL5593629.1"
                     /translation="MKLFSRISGVIGIFSALLTTQVVADSDVRISIDEGVSMAQPIAV
                     VPFKASGVPADVAQIISDDLRNSGKFTPLERSQMPAQPGSAAEVVADQWSAIGIDNIV
                     VGQVSSTGGGYNVAYQLIDTLGTSGTAGGVIAQGSFIVPAAQIRQGAHTVSDEVFEKL
                     TQIRGAFRTKIAYVVQRGVSSYELRVSDYDGFNAFTITTSKEPLMSPEWSPDGSRLAY
                     VTFENKKAQVVVHDIRSGARRVVAALKGHNGAPSFSPDGSRIAFASNQDGELNIYVVG
                     SGGGTPSKLTANAGNNTEPSWSPDGSTIYFTSDRAGSPQVYRMSSSGGGASPMGGSGS
                     YNAKVSSDGKNLIMIAGDRVVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTKG
                     TSKVLQLVSADGRFKANLPGAGGHYKFPAWSPYLTK"
     gene            complement(15332..16555)
                     /gene="tolA"
                     /locus_tag="PXE26_001029"
     CDS             complement(15332..16555)
                     /gene="tolA"
                     /locus_tag="PXE26_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HDL5593630.1"
                     /translation="MKSQQDRLELAVIVSILLHILLIGLLLLGSLFTKTELAAAGGSG
                     GDSDSFEAVMVDTGQVAAEYGQLLAEKKGSKASKPKVEPKEEAVEEDVEDKPTPEEIQ
                     KQKQAELAAIQEKQRQQEIERQQKLQEQQKQEQAKQEELKKQQAEEATRKKAAEAAKL
                     KADAEAKRLEAAAKQAEEEKKAKEALEKKLEQQKKAEAEKKLKEQKELKEQQAKEAKE
                     AKEKAEKEAKAKAEKEAKEKAEKEAKAKAEKEAKEKAEKEAKAKAAAEAKAAQAKNNK
                     ALDDFLNSGDIGGGSSKGGNKNSAGSQGSGGTSGLGQGTNVDGNAYGQRIKKLIQSRY
                     RVDPSFAGKQCDVKIFLSRDGTITNYQVISGDKAVCDAAVSAIVATRKVPPAPSDAVY
                     NMFKSPTLDFSLKVK"
     gene            complement(16569..17006)
                     /gene="tolR"
                     /locus_tag="PXE26_001030"
     CDS             complement(16569..17006)
                     /gene="tolR"
                     /locus_tag="PXE26_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin uptake protein TolR"
                     /protein_id="HDL5593631.1"
                     /translation="MSRRLKRNDIKSEINIVPFLDVLLVLLLIFMATAPIISQSVEVN
                     LPEDTHSQSVSNEDKTPVILEVAGVGEYKLKIDGNYVQSNGQENINESEVVAYAGEQF
                     QKDNNTLFLVAGDKVVPYEEIMKGITLLKDAGVKSVGLMTEGK"
     gene            complement(17148..17828)
                     /gene="tolQ"
                     /locus_tag="PXE26_001031"
     CDS             complement(17148..17828)
                     /gene="tolQ"
                     /locus_tag="PXE26_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolQ"
                     /protein_id="HDL5593632.1"
                     /translation="MQTEFSLLSLFLEASIVVKIVMLILIVFSILSWAVIIQRSKILT
                     KAKKDSLAFEDRFWSGEDLNRLHQGLENRRDALNGSEQIFYVGFKEFTRLQQANPDAP
                     ESIIQGSTRAMNLALNREMESLENYIPFLGTVGSISPYIGLFGTVWGIMHSFMGLSAV
                     KQATLQSVAPGIAEALIATAIGLFAAIPAVMAYNRLNLRLGKVEQGYVNFIDEFTTLL
                     HRQAFSKR"
     gene            complement(17850..18251)
                     /gene="ybgC"
                     /locus_tag="PXE26_001032"
     CDS             complement(17850..18251)
                     /gene="ybgC"
                     /locus_tag="PXE26_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HDL5593633.1"
                     /translation="MDFPIRVYYEDTDAGGVVYHSNYLNFFERARTEFLRQQHFSQQE
                     LFSQSLAFVVKRIEIDYKLPARLDDLLNVETTLSELKKATLIFKQRLWKDGDCLSEAN
                     VTVACVDLIKMKPVAIPDDIRQALQKSYFSI"
BASE COUNT         5435 a         4115 c         3414 g         5353 t
ORIGIN      
        1 tataaaagga gacaaataaa acaagaacaa aagaaaaata aaatcttggc tcctcctgcg
       61 ggactcgaac ctgcgacata tggattaaca gtccaccgtt ctaccgactg aactaaggag
      121 gaattaacgg tgtaaataat aggctaaaac gttttagccg tcaaataaaa aaaataaact
      181 gtcgttcatt ttttacattt cttgacattt tttcgccaat aagtatgaga aaaatactta
      241 ataagaggta caaaccggac agttattttg cttaggtaat gccatttctc tgacagaaaa
      301 atgcaagccg tcaatcatta acaattttcc ggaaagagtt ctgccgatat taagtagcac
      361 tttaattgct tccaacgctt gaatactgcc tatgatgcca acaatcggag caatgacccc
      421 cgcttcaaca caacttaaag tcgcatcacc aaacaacctg cttaaacatt catagcacgg
      481 ttcttgttct tgataacaaa atacactcac ctgcccttca aatcgaattg ccgaaccgga
      541 aacaagcggt cgtttttgct taaaacattg caaatttaac tgattacgca cagtaacgtt
      601 atcggtacaa tccagcacta aatctacatt tgcaatcagc ttggctaact gctcatcgga
      661 acatcgctga ttgatagttt caatctgaat gttcggatta atcgccgcta atcgagcttt
      721 ggcagattcc acctttggct gcccgatagt cgcatcggta tgtaaaattt ggcgttgcag
      781 attagaaagt gagaccagat caaaatccac caaagtcaaa tgcccaacgc cggcagaagc
      841 taagtattgc gatgccgcac agcccaaacc acctaaaccg acaatcaaca ctcggctggc
      901 ttttaacttt tcctgcccgt caaaatccac gctttttagg ataatctggc gattataacg
      961 tagcatttcg tgatcggtaa gttccatttt tacacctaaa gagtaaacga tggcgcaagc
     1021 gtccacgctt gtgcctatat ttttattgct agcacaagcg tggacgcttg cgctatctta
     1081 attcattaat acatcagcga attaaacggc tgaatagtga ctttttcccc agcatcaaca
     1141 ttgcctcgtt ctgcttctag cacaataaaa cagttacttt cattaaaagc gctgaaaata
     1201 tgtgagcctt gcgtgccaac tgcacgaact tctaactcac ctttttcatt ggcatagtaa
     1261 tagccccgtt ggaaatcttg gcgaccgacc gcttttttca attttccggc actgcaagcg
     1321 gttagatttt gggttaattt tgcaatttta tctgtcgata aacccgaaag tttggctaac
     1381 gccggttgcg ctaattggta gaaagtcact aatgcagaga cagggttgcc cggcagccca
     1441 aaaaaccaag cctgttctaa tttaccgaat gcaaaaggct tgcccggctt catcgcaatt
     1501 ttccagaaac cgatttcgcc taatttttcc agtacatctt tggtaaaatc tgcctctccc
     1561 acagatacgc cgccactggt aatcaacaca tcggcttgct gttgggcttg cctgaaagtt
     1621 tgctcaaaca gaattgggtc atcaggcaaa atcccaaaat ctaaaatctc gcagttgagt
     1681 ttttccagca ttaaacgcac cgcaaaacgg ttggtgtcgt aaatttttcc ctcactcaaa
     1741 ggctcgccaa ctgaggttaa ttcatcgccg gttgaaagaa ttgccacttt taattttaca
     1801 aaaacaggca cagaagcaat accgagtgaa gctagcaacg gtaaactggc tacattcaat
     1861 aatgagcctt ttttcaagac caatgccccc tgtttaacat cttccccaat gcggcgaatg
     1921 ttactgccta attttggaat atggttaaag gttacagagc catcggaatt taacgtagtt
     1981 tcctcttgca ttacaacggc atcaacgccc tttggcacta atgctcccgt cataatccgc
     2041 acgcattcgc ctgcctttat ttcgccgtta aacgggttac cggcaaaggc tttaccagcc
     2101 acattcaagg ttaaattttg tgctaaatct gaaatacgaa ccgcgtagcc gtccatcgcc
     2161 gaattatcaa aattcggtac attaatcggg gaaaaaatat cctctgccaa cactcggtta
     2221 gcacactcat ttaacggaag ttgttccacc aatttaggtg tcgataaacg agcaagcata
     2281 ttatctaacg catcactcaa agccaaaagt gccataattt cctacctatt caacgtttag
     2341 ctaatttgta caaagaaatc ccgtacgcca atcaacagat tattcaccgc aatcgcagcc
     2401 agaattaacc ccatcactcg gctgataatc gcagcccctg cattaccaat aaggtgctga
     2461 atacggtttg ccgctaatag caacaaatag gtaataaaga gtaccaaaag cataatgccg
     2521 gcggtgataa tttgatcgcc gatatgaaaa cggtgattgt cggttaataa tacgattgcc
     2581 atcatcgccc cgggagaagc aatcgacggt acagctagcg gataaaccgc caattcattc
     2641 agattactgc tgatccgcat ttcttgctcg ggcttgcttt cgccaaaaat catcgttaaa
     2701 gcaaataaca acagcactaa gccgcctgcc gcttggaatg caggtaacgg aatctgcatt
     2761 gattctaaca gcacttgccc accgataagg aagaaaatca aaataccggc ggcaatcaag
     2821 accgcattta gtgcaatttt acgccgtgct tcaatcggca aaccaatggt ttttgccaaa
     2881 taaacaggaa cagaaccaat cgggtcgatc accgcccata aaaccacaaa ttgtaccgct
     2941 aatgaatcaa acatattctc tcctgttatc ttgataattt gcaaaatttt agcataaaac
     3001 aaccgcttgc acggcttttt cttacagata gctcaccggt aacgctacca aattttcact
     3061 taaataaagt ttggtcggat attggttaat aatcgctccc tgccctaatt tccattcact
     3121 agaaactgag tttagcaagt caaaactttt tgccattttt ttggttgggc ttgccgtgac
     3181 cttaatttct atcggataaa gcgtgcgatc atattcaata attaagtcga tctctttctg
     3241 gttagtatca cggtaaaaat aaatcggcgg ctcaattcct tgattatgaa aggattttat
     3301 aatttggctt accacaaagg tttcaaagaa ctgccagctt tttgcccctt gagcaatagt
     3361 ttcgggggta agccatttgg ttaaatacgc cattaacccg gtgtctagaa aatacacttt
     3421 tggggtctta attgcccgtt tcaaatgatt gttgtggtat ggctggagca aatagataat
     3481 gccggaagtc tgcaaaatgg cgacccaacg tttaatcgtt tcattcgata ctccaacttc
     3541 ttgagcaata ttactgtaat tgagtagctc accactacga gaggcaatag agaccataaa
     3601 acgggtaaaa tccgttgtgc tggcaatatt ggttaattgg cgaacatctc gctcaatgta
     3661 ggtcgctaca taagagcgat aataaatctc ccaatccacc tcttgtgcat ataaacgagg
     3721 catatcgcct ttatggataa gctgccagat gttctccggt gattttaatt cttgctcccg
     3781 agctaacaaa tagtcggttg tcggtaaaaa aggttgatcg aacttcaccc ctaaaatttc
     3841 acgcaacgaa agcccttgta attttaaaat agcaatacga ccggcaagtg tttcactcac
     3901 attctgcatt aattcaaagg cttgcgaccc cgaaagtaaa aacaaaccgt tttgctgttt
     3961 tttatcaatt tctaacttta ataacgcaaa aatttcaggc acatactgta cttcgtctaa
     4021 aataagcttg ccttgatggt ttaaaaaaaa caggcgagat tcttgtttag ccagctccag
     4081 caacattggg tcatcaaaag taatatattg atagccctca ccaatatgtt gtaacaatgt
     4141 cgatttacca acctgtcttg cccctgtcac taaaacggca ggaaattgcg ccacgagtcg
     4201 ttttaacagc gattgcattt gccgagaaat catttttcct ccaaaatagc ctaaatcaag
     4261 tttaacctca tatataatgt tgaattaaac ttaatttaaa ttatttttta agtttaattc
     4321 aacacagaat attgaattaa actgaatttc ttattttagt tcacaaagca atggctttgc
     4381 ttttttatgc taaaatacgc aaaattttta acaaaataga ccgcttgcaa tgatcttttt
     4441 tacagactta attttaaaac gagggcattc cgttctcatt gataacagct ccgttaccat
     4501 tcacaccggg cagaaagtcg gtttggtggg aaaaaacggc tgtggcaaat cctctctttt
     4561 tgccttactg aaaaatgaat tacaacctga aggtggcgat gtatcgttgc cgaaaaactg
     4621 ggcgatctcg tgggtaaatc aagaaacgcc tgcgttagct atttcagcgt tagactatgt
     4681 gattcaagga gatcgggaat atacccatct tatggctgag ctagatatcg caaatgaaaa
     4741 gaatgacggc aaccgcattg cgattatcca tactcaactt gataccattg atgcttggac
     4801 aattcaatcc cgtgccgcta ccctgcttaa cggcttgggg tttagcaccg aacaactgca
     4861 actgccggtg aaatccttct ccggtggctg gcgtatgcgg ttaaatttgg cacaagctct
     4921 gatttgtcgt tccgatctgt tattgcttga cgagccaacc aaccacttag acttagatgc
     4981 ggttatttgg ttggagcgtt ggctgagtaa ctatcgtggc actttattgt taatttcgca
     5041 cgaccgtgat tttctcgatc cgattatcga tcgggtgatt catattgaac atcaaaagct
     5101 caatgaatac accggcaatt acacctcgtt tgagattcaa cgtgcgacca aaatcgccca
     5161 gcagaatgcc gcttatcagc aacagcaacg taaagttgct catttgcaga gttttatcga
     5221 tcgctttaaa gccaaagcga ctaaagcgaa acaggcacaa agccgaatta aagcgttgga
     5281 aaaaatggag cttattgccc cagcctatgc tgattcgccg tttgaatttg aatttcgccc
     5341 accgcttgca ctgcctagcc cgttattaat gatggaaaaa gtcagtgccg gctatgcgga
     5401 aaaaacggtg ttggaatcgg tcaaactgaa tttggttccc ggctctcgta ttggtttact
     5461 cgggagaaac ggtgcaggga aatccacgct gattaaatta ttggcgggcg aacttccgcc
     5521 ccaaaacggc tcaattcaac tggcaaaagg cgtgcaactc ggctatttcg cccaacatca
     5581 ggtggataca ctacgttttg atgaaagccc actttggcat ttacaaaaac tcgcaccgga
     5641 aaaaaccgag caggaattac gcaattattt aggcggtttc gattttaaag gcgataaagt
     5701 ggtacaagct gtgaaatcat tctccggcgg agaaaaggcc cgtttagtgc ttgccttaat
     5761 tgtatggcaa cgcccgaatt tactgctatt agatgagcca accaaccatt tagatttaga
     5821 aatgcgacaa gccctggttg atgcactgac ctattacgaa ggctcgctag tggtggtttc
     5881 gcacgaccgc catttattgc gtagcaccgt gaatgaattt tatttagtgc acgaccgcaa
     5941 agtggaaaaa tttaaaggtg atttagacga ttaccaaaaa tggctcaatg agcaaaacgc
     6001 cttagccaac gagccgaaat ccgtacttgc aaaagattcg gcaaattcga ccgcttgctc
     6061 tagcaccaat gaaaatagtg cagctcaacg caaagagcaa aaacgcttag aggcagagcg
     6121 ccgccaacaa accgccccat tgcggaaaaa aattactcaa ctggaaaaag agttagaaaa
     6181 agcaaccgaa aaattaaata aactcgaagc aatgcttacc gaaagcgaca tttatgaagc
     6241 cgaaaataaa gcaaaactaa ctgaaacact tgcgaaacag ttagaggcaa aaaggctggt
     6301 tgaagaaatt gaaatgcaat ggttggaggc tcaggaggag tttgagacca tgttacgcta
     6361 gggttctaca agatagcgca agcgtccacg cttgtgccat ttaagggaac tatacacctc
     6421 aaaaaaacaa tgatcattaa gctagctttt ttataaattt aaaaacctat agattaaata
     6481 aataatgata ttaatagtaa aatcacgagt gcaactacac tgacgataat aaaatcaggc
     6541 atacttattc tccctataaa atgtggtaat gtaactacaa attaattata taatgaacct
     6601 aaaaaaggtt caacattatt tgtacctaat ataggtgcaa tgaaaaatct tagattatca
     6661 atacattcca gcgagcatat ttggttaaga gaactattct taaaacgccg tttggaacta
     6721 gggctaacac aacgcacatt aggagaaaaa atgggcgttc tttactcatt tatcggaaaa
     6781 gtagaaacag gagatcgcag attagatatt tttgaattta tcgcttattg caaagggtta
     6841 gatttagatc ctttatctgt attgcaagaa attgaacaac aatttcctca taaataaagg
     6901 cattgagtta taactcaatg cctttatttt ctatgtcaaa tctctacatg ctcggcttag
     6961 tctctgccag aatggcgtat ttattattca tttcctctgc ccaagcggtt aaatttgggt
     7021 aattttttgc aagatcgtag cctatcttat ctaagcggaa tgcccaccag tcaattaatg
     7081 ctactgcggt taatgtgcct aaattcagct ctgtgccaaa ctcttgcaat gcctcttcta
     7141 attgtctgaa cgaacggata ttgcgttcca ttaattgctc gtggcggctg acccaccatt
     7201 cattctcggg gcgagccata cgttcttgta ataaagttgg catcgtattt tccataatgc
     7261 cgtccgccaa attatgtaat gccaacactg cccagcgagg tttaccctct ttaggtaaca
     7321 gtggagtgtt attgcctttt tggtcaagat attcgctaat taacaaacta ccgaaaagcc
     7381 aacgtccgca gttgcgttgt agggcaggaa tacgtcctaa cgggttatct tgattatgtg
     7441 gcgaatttgg atccattgct tttgtcaccc gcaacatttc gactttatcg tctaattggt
     7501 ggtgtttaat caccgcaagg gctttgcggg cgaaagggct ggtggttgag taccaaagtt
     7561 tcatactatt ctccgtgttt gatgtgattg gatttgcaaa ttttttgcca aaaatgaccg
     7621 cttgtcggca aggcttgcac tgagattttc tcattttcgt attcaaaatc aagctgataa
     7681 gcgtgcaaat aaacacggtc ggcttggcta cctgaataga gtttatcacc taaaatcggg
     7741 ctgcccaaac ttttcattgc cactcttaat tggtgagttt tgcctgtttt gggttgcaaa
     7801 ataaaatgcc tgagcgagtc ttcaacagaa tgagaaataa attgcgttac tgccgggttt
     7861 tccttactgt ggcataattt ccacgctcca tttctgcttt tttgcatatc gccaacaatt
     7921 ctaccctgct ttttcttcgg ctttttatcg cttaatgccc aataggtttt gtagatttta
     7981 tgctgttcaa ataaatggta aaaccttgct gccgcctctt tattcaacgc taaaatcagt
     8041 aaacctgagg tgattttatc cagacggtga accagccaaa cctgctttac attcagttgg
     8101 cgagccacta attccgttaa gccgatttca gcctcatctt tatgcacact caagccttcc
     8161 ggcttattga taataataaa atcacgatgt tgataacaaa taggcaatgt tggggtcatt
     8221 ttgctataat ccttccaatt tttgactatt ttagcaagga aattacaatg gctgttacca
     8281 tttatttagt acgacacggc agaaccgtgt ggaatttgga aggcagatta caaggctcgg
     8341 gcgattccgc tttagtagaa gaagggatta tcggagcgaa gaaaaccggc attgcgttaa
     8401 aacatattcc gtttaccgcc gcctattcca gtatgcagaa acgggctcaa gataccgcaa
     8461 actacatttt agcagaaaat gaacgcagta atattccgca ttttcatcat aaaggcttga
     8521 atgaatttga ttttggcagc tgggaaggaa tgaaatctgt cgatttgcaa gaaaatgatg
     8581 aatattgggt gatgaaacgt acaccggcag aatatctggc aaaagcaaac ggtggcgagc
     8641 gatttgagca actttatcaa cgggtgactc aggcgttcaa tcaaatcgcc gagctacacc
     8701 aaaatgacgg caaagtgctg attgtttcac atggtatgac cttaacctta ctcacggctg
     8761 tgttaaaagg cattgcgtgg caagatttcc gcaatgaaga aaaacatagc tttgtgttca
     8821 atactgccat tacgaaagta gaagtagaga atggcaaagt aacggtgctg gaatttaata
     8881 ataccgacca tttggataat gtgccaacaa gccaatacaa acgataatat taagggcgga
     8941 acattgtccg cccatagcat tttctaatca gagaacactt tttctttcgt ttctgtttta
     9001 gcaaataccg tatttttgac cgaagtaagc aactcctgac gaatagctga aattcttggc
     9061 ttctcattcg cttgaaaagc aacaggacga caaaattcca ttgctttaat gccaaggcga
     9121 gcagtgagta aacccacacc aataccttgt gcggcacgga gcgataattt cgccgtaagg
     9181 ttttgcgaga agaaatccat tccaacatca gtagcgattt cggttgcacc ggcgaacacc
     9241 atatttttca gcaccatttt gaacagtttt aagcggctga tataacccaa ttccattcca
     9301 taggctttgg taattttatt cactaaagcg atatttcttg ccgccattaa caacacatca
     9361 actattgcca gcgggctaac cgccacaatc accgcatttt ctgccgcatt gcgggaaatc
     9421 atctgcttaa cctgtttatc tatcggcttt agcacatttt cgctaaacag atatagtacc
     9481 tctttggcat tataagcctc gttcagttcg cttttccaaa gttgctcggc ttgagcaatg
     9541 ctcggcaagt gattaagctg atttgcaata ttttcgcaaa atttgaccgc ttgttcgcca
     9601 tcattggaag gcagctgttc cagcaataat tggttactca tttgttgatt tttctgatga
     9661 tttcgcaaat acaccaactt tcgccattcg gaaataatcg ccccaacgcc caacaagctg
     9721 acaataaaaa agactatcga gaacgcaaaa tagatccact ctctttgctg gaacgtatca
     9781 atcaaccact gaatactttg agcaattacc gccacgccaa acaaggcaag tgtggcaagt
     9841 agtactcgaa tccaaaagcg ggaaggctta aggctttctt caataatcag ctccgcctca
     9901 actgcttttt cctcttcttc aataatcgca ttttcgagat caaactcttg tttaggttca
     9961 aaatgctcgg ttgtttttag ctcttcttca ttaaaaattt gcttactcat tattcctcca
    10021 ctgccttttc aatatgtgct tttagaccat catagccgtg ttcggttttc aagatatcaa
    10081 ataattctac cgcttgagga tattctttat ccaaataacg tagccattgt ttgatgcgag
    10141 caacgtggta aaaaccggta tcaaactgat tttccatctg aacgtactta aacaatagct
    10201 gtagcacttc attccacgcc attttcggaa cattatattt caccactttg cttaaattcg
    10261 gtgtgtttaa cgccccacgc cccatcatta atgccttgca agcggttatt ttttggcaat
    10321 ttttcgccga ttcaaaatcc caaatttcgc cgttggcgat aacaggaata gacagccgtt
    10381 gttgaatttc gccaatcgcc tgccaattaa ttctttctgc tcgataacca tcaactttgg
    10441 ttcgcccgtg aacggtaatt tcattcgctc cgccctgttc taccgcatcg gcaatttcaa
    10501 aacattggct aacggaatcc caacctaatc gcacttttac ggaaacgatt ttatcgcttg
    10561 gcacagcttc acgcatcgct ttggttgcac gataaatcag ttccggatct tttaataacg
    10621 aagccccacc attgctgcca tttaccgttt tagaggggca gccacagttg agatctaccc
    10681 cgtgtgaacc aagctcaatg gcaagagctg cattttctgc cagccactgt gggtgttgcc
    10741 ctaaaagctg tacccgcact ggtgtgccgg aatcggttaa tccgccttga tatagctcag
    10801 gggctaggcg ataaaaggtt ttcttcggta aacgttgatc gaccactcgc acaaattcgg
    10861 aaatacagag atcgtagtca ttcactgaag ttaaaaggtt gcggacaaaa gggtctaaaa
    10921 ccccttgcat cggggcaaga ataacgttag gaattggatt cattggtaaa ataaaaaata
    10981 caagcggtta ttttttctca acattttgca aaaaattggc aagaaacaac cgcttgaagg
    11041 ttaaaaatgt ctatcgtgaa tgcgcaaatc ggggcgagcg atcaggtaaa tcatcagtgc
    11101 ggttaatgcc ccaagagtat ccgcaagcat atctttttga gcgtcccaaa tatccccttg
    11161 cgagcctaga aattccacgc cggcattgcc accttcaatc acggcatatt gccattcaat
    11221 aatttcgtaa gctgccgcca ccgacataat gaaaaacagc gagaagaaaa atgctacgcc
    11281 cattccgcac ttgcgtttac gcagtaacca ttctgccatc gggaagctgt aaaaaccgat
    11341 aatgtaatgt gctactcgat caaaatggtt acgatcttca cctaaaatcg gggttagaaa
    11401 ttgatttgcc cactcaaacg gcacattggc aaaggtatat tttgccccga tcaagtgcat
    11461 aatcagccaa agcgacatca aaaaataagc taacccacta aactgaaatt tagggtaagt
    11521 gataattaaa agggcaaaaa cgataaaaat cggtatcact tccgcatacc aaactgcgcg
    11581 gtctgtcgga tttaaccctg accaaaccgc aatcacggta ataacaatcg ctaaaaatag
    11641 agggatgata tgcgagcgtg aatccattat ttccactctt tcactttaca aattaaatcg
    11701 tacgccgctt gaatttgttg agctttctct tttgccaact ccatcatctc atcaggcaaa
    11761 cctttagcgg ctaatttatc cgggtgatgt tcgttcatta acttacgata agcccgtttc
    11821 actgtatttt gatcgtcttg tgcggttacg cctaatacgg tataggctgc ctcaatgctt
    11881 ggttgtgcag gctgctgata actgccctga tagccacctt gagattgctg atgataactc
    11941 ccattttgct gataatagcc accattgcgg aattgttgag ctgccataat cattgcgatc
    12001 atctgctcaa attggaagcg agacattccc attgtttcgg caatcgtaaa cagaatttgt
    12061 tgctcgttca catcaagttg cccatcttgc aaggctgcct gcatttgcac ttcgacaaag
    12121 aaacgtaata agtcagttct tgccccacag gcttctctga actcttgaat gacttggcgt
    12181 aacgggaagt caggctcttt acctaaggta aaggcatttt gcgctaattg ctgggctgca
    12241 ctatctaatt ttaagcgagc cattaacgct cgggctaatt caatatccgc ttcagtaaca
    12301 cgcccttttg ctttcgcaat atgccccaac accgcaaaag tggtttgggt gaaaagcgat
    12361 tggcgagtta aatttttacc gaaaagactt gaacgaactg aacctaattc atagagtttt
    12421 ttatcggcta aatgcccgat aaaagcgcca agtatcccac caaataaacc gtgaaaaagc
    12481 tgatagccca agaaaaaacc gactattttt ccgataaatt gcattttttt atccttttat
    12541 agaaatgaat aaacgttatt ctaacaaaat tttactttga ttgcttttta gttaatacaa
    12601 acataagcca gcttgagaca aaaataattg cataacctag ccaactcaac atatccgggt
    12661 attgttcaaa gaacaacaac cctaaaattg cactaaatag cacagaggca taactataaa
    12721 ttgagatgtc tttcgccgcc gcatatttat aggcggtagt tacacaaaac tgcccgaccg
    12781 ctgaagttac ccctgctaac actaagtaga ttgtctgtaa attggttagc actacataat
    12841 caatggcgac aaaaggcaat aatatcaagg tcgaaaaggc agaaaaaaag aaaacaatgg
    12901 tattaggtga ttctactttt ttggtttttg ccaataacct taagcataaa taggcaatgg
    12961 ctgcaaacac agagccaatc acgccaacca gataaggcat aaagcgaata tcaactgccg
    13021 gtttgataat aaaaagtgcc ccgataaagg caataaggca taaaatccat tgcaggagag
    13081 atgctctctc ttttaaaaaa atcgcagaaa gaataattaa aatgaacgac gtgagtttgc
    13141 caatcatatc gacatcactt agcacaaggt gatcgatgat atatacacca cataaaatcc
    13201 ccaataaccc ggtgatggaa cggcttaata ataacaaacg attttctgca taaccaaaga
    13261 ataattggcg atttttccac acaatataac cgcttatcaa tgctgtgcgt tgcgaaaaat
    13321 cgctttttgt gcaatcggta catcccccga aagacgaaga aaagcagcca taatcgcaaa
    13381 gcttagtgcc gacaaaagca cacaaaaaat ggctttaaat aacggcgaga gcgaattcca
    13441 aaaattcata gcataaaggc ttttaataaa aataaagccc tgattattca gggcttcaat
    13501 ttagaatcaa ctaagaatta gtattctaat actgcacgac ggtttttcgc gtagtcagct
    13561 tctgagtgac ctaatactgc tggtttctct tcaccgtaag aaacagttga agtgttgtta
    13621 gcacctttag ctgctaagta acctttaact gcatctgcgc gacgttgacc taatgcgatg
    13681 ttgtactctg gagtaccacg ctcatcagcg tgaccagcaa tagttacgtt accttgagtt
    13741 tttgctaata attgagcgtg agcgtctaat aattgacggt attcaccttc aactgcatag
    13801 ctgtcaaaac cgaagtatac agtgttgtat tgtgctttta attgttcagc tgttaaacca
    13861 ccgaattcgc ctgctgcatt tgctgctgca tttgctgctg cgtttgctgc tgcgtttgct
    13921 gctgcatcat ctgatgagct gctacatgct gctaatgcga aagctggtac tgctaccatt
    13981 aatactttag caaatttttt catttgttgc tcctaataga gaaatattat tatttagtta
    14041 agtatggtga ccatgcaggg aatttataat gtccacctgc gccaggcaaa ttagctttaa
    14101 aacgcccatc tgcagacacc aattgtagca ctttactcgt acctttggta gagctataaa
    14161 taaccataat gccattcggt gaaatacttg gactttcgtc taagaaagtt gaactcagta
    14221 cttctgtgcc acctgaagcg agatcgcgtt tcacaactct atcaccggca atcatgatta
    14281 aattcttacc atcagatgat actttcgcat tatagctacc gctaccgccc attgggctag
    14341 caccaccacc tgatgaactc attctataaa cttgaggaga acctgcacgg tcagacgtaa
    14401 agtagattgt gctaccatct ggagaccagc ttggttcagt attatttcca gcattagcgg
    14461 tcaatttact tggtgtacca ccgccactac ctacaacata aatatttaac tcaccatctt
    14521 gatttgaggc aaacgcaatg cgagaaccgt ctggagagaa tgatggcgca ccattatgtc
    14581 ctttcaatgc tgccactaca cggcgagcac ctgaacgaat atcgtgaaca acaacctgcg
    14641 cttttttatt ttcaaatgtc acataagcta atctgctacc atctggtgac cactctggcg
    14701 acattaaagg ctctttactg gttgtaatag taaaggcatt aaaaccatca taatcagata
    14761 ctcgtaattc atacgatgat acgccacgtt gaaccacata cgcaatttta gttctaaatg
    14821 caccgcgaat ttgggttaat ttttcaaata cctcatcact tactgtatgc gcaccttgac
    14881 gaatttgggc tgccggaaca ataaatgaac cttgggcaat gacaccaccc gctgtacccg
    14941 atgtaccaag agtatcaatt aattgataag cgacattata accgccacct gtgctactca
    15001 cttggccaac tacaatatta tcaataccga tagcactcca ttgatctgcc accacttccg
    15061 ctgctgatcc cggttgagca ggcatttgag agcgttcaag cggtgtaaat ttaccactat
    15121 ttcgcaaatc atcagaaata atttgtgcaa catctgccgg cacaccgctg gctttaaatg
    15181 gcacaaccgc aatcggctga gccatactta caccttcatc aatagaaatt cgcacatcag
    15241 aatcagcaac cacctgagtt gtcaataatg ctgaaaagat gcctattaca cccgatatac
    15301 gagagaataa tttcatttgt agtcctctaa attatttaac ttttaaacta aaatcaagtg
    15361 ttggtgattt aaacatatta tataccgcat ctgatggtgc aggtggtact tttctagttg
    15421 ccactattgc acttaccgct gcatcacata ctgctttatc gccactgata acttgatagt
    15481 tagtaattgt gccatctcga cttaagaata tcttaacatc acattgtttt ccggcaaaac
    15541 ttggatcaac ccgatatcga gattgaatta atttcttaat tcgttgacca tatgcattac
    15601 catctacatt agtaccttgc cctaagccac ttgtaccacc agaaccttgt gatcctgctg
    15661 agtttttgtt accaccttta cttgaaccac caccgatgtc tccactattg aggaaatcat
    15721 caagtgcttt attgtttttc gcttgggcgg cttttgcctc agcagctgcc ttcgctttag
    15781 cttctttctc ggctttctct ttggcttctt tttctgcttt tgctttggct tctttctcag
    15841 ccttttcttt tgcttctttt tctgccttgg ctttagcttc tttttctgct ttttccttcg
    15901 cttctttagc ttcttttgcc tgctgttcct tcagttcttt ttgctctttt aactttttct
    15961 cagcttccgc tttcttctgc tgttcaagct tcttttcaag tgcttcttta gcttttttct
    16021 cttcttcagc ttgtttagca gcagcctcta aacgcttagc ttctgcatct gctttcagtt
    16081 ttgctgcttc agctgctttt ttacgagttg cttcttctgc ttgctgcttt ttaagctctt
    16141 cttgcttagc ttgttcttgc ttttgctgtt cttgtagttt ttgctgacgc tcaatttctt
    16201 gctgacgctg tttctcttga atcgccgcta actcagcttg tttctgtttt tggatctctt
    16261 ccggagtcgg tttatcttcc acatcttctt caacagcttc ctctttaggc tctacctttg
    16321 gcttcgatgc ttttgagcct tttttctctg ccaataactg cccatattca gcagccactt
    16381 gcccagtatc taccatcaca gcttcaaagc tatcgctatc gccaccactg ccaccagccg
    16441 cagcgagttc cgtcttagtg aaaagagacc cgagcaataa caacccgatt aacaatatat
    16501 gcaataagat cgaaacaata accgctagct ctagtctatc ttgttgagat ttcacacgtt
    16561 atccttggct atttaccttc tgtcattaaa cctaccgatt tcactccggc gtctttaagt
    16621 agtgtaatac ctttcataat ttcttcataa ggtactactt tatcaccggc aactaaaaat
    16681 aaggtattgt tatctttttg aaattgttcc cctgcatagg caacaacttc tgattcatta
    16741 atattctctt gcccattact ttgcacatag ttaccgtcaa ttttcaattt atattcacca
    16801 acacctgcca cctccaaaat cactggagtt ttatcttcat tagaaactga ttggctatgc
    16861 gtatcttccg gtaaattaac ttctacactt tgactgataa ttggggccgt tgccataaaa
    16921 atcagcaata ataccaacaa tacatcaaga aatggaacaa tgttgatttc tgatttaatg
    16981 tcattacgtt ttaaacgacg agacatatat tcctctttac aggtgcttag caccttaatt
    17041 gatctgaaat aaccggcaca gtgtcccggt ctcgaataat gcggttacaa gcggtctttt
    17101 ttacgaaaaa ctttacaaat tttcattaaa aatcaaccgc ttgtagatta tctttttgaa
    17161 aaagcctgac ggtgtaataa ggtcgtgaac tcatcaatga aattcacata cccttgctca
    17221 actttaccta aacgtaaatt caaacggtta tatgccatta ctgcaggaat cgccgcaaat
    17281 aaaccgatag ccgttgcaat taatgcttct gcaatacccg gtgcgactga ttgtaaagtt
    17341 gcttgcttaa ctgcacttaa tcccataaag gagtgcataa ttccccaaac cgttccgaat
    17401 aaaccaatat atgggctgat tgaacccact gtgcctaaaa acggaatgta gttttctaaa
    17461 ctttccattt cacggtttaa tgctaagttc atcgcacggg tagaaccttg aataatcgat
    17521 tctggcgcat ctgggttcgc ttgttgtaaa cgggtaaatt ctttaaaccc aacataaaag
    17581 atttgctctg aaccatttaa tgcatcacga cgattctcta aaccttggtg taaacggttt
    17641 agatcttccc ctgaccagaa tcgatcttca aaagcaaggg aatctttttt ggctttagtt
    17701 aaaattttgc tgcgctgaat aatcaccgcc caagacaaaa ttgagaatac aataaggatc
    17761 agcatcacga tctttaccac aatacttgct tctaaaaata acgaaagaag actaaattca
    17821 gtttgcatta ataaaactcc gaatagtttt taaatagaaa aataactttt ttgtaatgct
    17881 tgacgaatat catcaggaat tgcaaccggc ttcattttga ttaaatcaac acaagcgacc
    17941 gtaacatttg cctcactcag acaatcgcca tctttccaca atcgttgttt aaagataagg
    18001 gttgctttct tcaattctga gagtgttgtt tccacattta ataaatcatc taaacgagca
    18061 gggagcttat aatctatttc aatcctctta acaacaaaag caagggattg gctaaaaagt
    18121 tcctgctgtg agaaatgctg ctgtctcaaa aattccgttc ttgcccgctc aaaaaaattc
    18181 agatagttgg aatgataaac tactccgccg gcatcagtat cttcataata aacacgaatc
    18241 gggaaatcca taagcattat ttctctcatt caaaatgaaa aaacgcccaa aatttaggcg
    18301 caaattgtga gatattt
//
LOCUS       DANLZD010000041        18274 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.041, whole genome shotgun sequence.
ACCESSION   DANLZD010000041 DANLZD010000000
VERSION     DANLZD010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18274)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18274)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18274
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.041"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(227..4213)
                     /gene="hrpA"
                     /locus_tag="PXE26_001033"
     CDS             complement(227..4213)
                     /gene="hrpA"
                     /locus_tag="PXE26_001033"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HDL5593634.1"
                     /translation="METPLQKNHKKPPLVKLENITTADFRRLLGRLKGAENIKNIDHK
                     RSVLAEISQDLTACQARFFARTQHAQNLKIDYPDLPVSARREEILKLISENQVVVIAG
                     ETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRIAARSVATRIAEELKSELGETVGYKV
                     RFNDQVSENSLIKLMTDGILLAEIQHDSYLNQYDTLIIDEAHERSLNNDFILGYLKQI
                     LHKRPDLKVIITSATIDVERFSKHFNNAPIIEVSGRTFPVEVRYRPIVEDQDQLQGIL
                     NAVDELQAEGRGDILIFMNGEREIRDTAEALQKQELRHSEILPLYARLSAAEQQRIFQ
                     PSGGLNRIILATNVAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASAN
                     QRKGRCGRTSEGICIRLYSEEDFNSRPQFTDPEILRTNLAAVILQMTSLGLSDIANFP
                     FVDAPDSRQIQDGIRLLEELQAIIPNEKIPSTACGGGLGRGEIRSNDGTPPLPTSPRK
                     RGDGFRLTPIGRQLAQLPVDPRLGRMVIEAAKNGSLHEVMMIVSALSIQDPRERPQEK
                     QQSADDKHRRFADKESDFLAFVNLWHFIQAQQKELSKNQFRNLCRKDYLNYNRVREWQ
                     DIYHQLRLAVREMGLKINSEPASYQPIHTALLAGLLSHIGLKDNEKMHYLGARNAHFF
                     IFPNSALFKKQPKWVMAAELVETTKLWGRMVARIEPEWVEPLAVHLTKSSYSEPHWAK
                     SKGAVMASEKVSLYGIPIVAQRSVNYGSIDPTVSREIFIRSALVEGECHNNYKFFKEN
                     HRLIREVEALEHKSRRRDILVDEQVLFEFYDQRIGTEVVSSKHFDTWWKQASKKDPEL
                     LNFEKSFLINDNANLASELDFPNFWHQGDLKLKLSYQFEVGKDHDGVTVHIPLPLLNQ
                     VEPEGFDWQIPGLRHELIVSLIKSLPKSLRRNFVPAPNYADAFLGRAEPFKKPLLDNL
                     SHELRRMTGVLVEPEQWDLSQLPPHLRMTFRVIDDKGKKLQESENLDELKFALKDEVQ
                     NTLSNIADDGIEQSGVHIWNFAELPQFYEQKKAHFSVKAYPAIVDEQTAVGVKLFETE
                     FEQARAMQAGLRRLLLLNVPSPIKYLHEKLPNKAKLGLYFAPFGKVLELIDDCIACAV
                     DQLVEEFGGFVWTEEKFTQLHEFVRANLNDKTVEIAKQVEKCLTLAYELNKRLKGKLD
                     FTMAFALSDIKTQIEGLIYPDFVTKTGYARLADLYRYLTAIERRLDKLLVDSNTDRAK
                     MLRVEAVQEAYKQLLAKLPKSKAVPDEVLEIRYMIEELRVSLFAQQLGTKYPISDKRI
                     LNVINEIK"
     gene            complement(4317..4769)
                     /locus_tag="PXE26_001034"
     CDS             complement(4317..4769)
                     /locus_tag="PXE26_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HDL5593635.1"
                     /translation="MTLQFNAVALLLVVLIILGLISQNSAVTISAAVLLIMQQTLLSK
                     FIPFVDQYGLKIGIIILTIGVLSPLVSGRITLPELAQLLNWKMALSIIAGVLVAWLGG
                     RGVNLMGSQPVLVTGLLIGTVIGVAFLKGVPVGPLIAAGILSLIVGKT"
     gene            complement(4832..5101)
                     /locus_tag="PXE26_001035"
     CDS             complement(4832..5101)
                     /locus_tag="PXE26_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593636.1"
                     /translation="MDAAMSLRFDKLRFVKRLQEANQTPEMAEAFANALDEALEQSQS
                     PLATKADLQLELEKLKNEINTTIFKAITLNITILGFLMAIMKFIN"
     gene            complement(5199..5795)
                     /gene="grpE"
                     /locus_tag="PXE26_001036"
     CDS             complement(5199..5795)
                     /gene="grpE"
                     /locus_tag="PXE26_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HDL5593637.1"
                     /translation="MTTQNEHLQEEVKQEEIQPEVVTEETQAEEQNTPQEEPLALAQA
                     RIAELEAYIAEADKREQDIQLRAQAEIQNIRRRAEQDVEKAHKFALEKFSKELLTVVD
                     NLERGLDALDKAVTDETTQALVDGVEMTHKEFINTLAKFGVVAIGEVGEAFNPELHEA
                     ISMQPAEGIEANHVSTVLQKGYTLHGRVIRPAMVMVAN"
     gene            6017..7111
                     /locus_tag="PXE26_001037"
     CDS             6017..7111
                     /locus_tag="PXE26_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDL5593638.1"
                     /translation="MKKLAGLFAAGLATVALTACNEEKAAEPKATAAEAKPQATNQTV
                     HLYTWTEYVPEGLLDEFTKETGIKVEVSSLESNETMYAKLKLQGKDGGYDVIAPSNYF
                     VSKMAKEGMLAELDHAQLPVIKELNQDWLNKPYDQGNKYSLPQLLGAPGIAFNTADYK
                     GETFTSWGDLWKPEFAGKVQLLDDAREVFNIALLKLGKNPNTTNPDEIKEAFEELKKL
                     RPNVLSFTSDNPANSFIAGEVSVGQLWNGSVRIAKKENAPVDMVFPKEGPVLWVDTLA
                     IPANAKNKENAHKLINYLLSAKVAEKLTLAIGYPTSNVEALKVLPKEITEDTAIYPSA
                     EVLQKSQWQDDVGDAIELYEKYYQELKAAK"
     gene            7247..8638
                     /locus_tag="PXE26_001038"
     CDS             7247..8638
                     /locus_tag="PXE26_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HDL5593639.1"
                     /translation="MNLRWQEYPENARKLFKLSLPIFISQLSASGMGLADIVMAGLVS
                     DDDVSAIAVSNSIYFPLFLFVSGLLNAITPTVSYLNGSSNRHLIANQVRQGYWIVFAM
                     SIPLMAIFLNSHLILDLMQTPAEFSIKSQQYLAVMAVGLIPALLAVSLRCMNDGLSNP
                     KPAMRITFFGLLLNIPLNYIFIFGKFGLPEMGAVGCGVATAIVNLIMFFMLLHYCYTN
                     SAQKDIRLFEKWIDAPSGQILLKLCKLGLPIAFAIFTEVMLFSTSSLFLSPLGSQVVA
                     SHQAALQTSSLFFMIPMSFGIATTIMIGQTLGQKNVEGAKILSYHALITATALAIIAA
                     IIIILLKNFIPFAFTNNPISIAITAHLLIFAAVYQIPDAIQAVANGILRGYKHTQPIL
                     YVTLFCYWGVSMPLGYILARTDWIVQPMAAQGFWLVFCIGLSLAGGLLLWQMRKIQAV
                     PKAQLIAKLERIK"
     gene            8697..12221
                     /gene="recB"
                     /locus_tag="PXE26_001039"
     CDS             8697..12221
                     /gene="recB"
                     /locus_tag="PXE26_001039"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HDL5593640.1"
                     /translation="MKNLNPIQLPLNKSVLIEASAGTGKTFTIANLYLRLLLGIGCNP
                     LTVEQILVVTFTKAATEELKNRIRKNIQQCADFLKDQADGLEVESTKSYRNNLDFLAQ
                     IYPLIPNIHEALLRLSIAEREIDTASVFTIHGFCQKMLVQFAFESGVRFDLDLQPNQS
                     DLLKKLSEEVWREQFYPQDLAITYAVAEQLGTPEYALNAVRRYLSTELPEPNASLNQD
                     IAEHLAQYQQFINEVKSYWKTHSDELVETIRHDLKHKITLHGGWYRATTFEAGVEVMN
                     QWANSQHNHFPAGLYLFTTEKIAAGTKKSCEPIDSPHLAKNQAFLTAYKERFENSLSA
                     MLQYQFLIALKAKLAEYKQSHPQRSFDDLLTMLNQALKNLHTGEALSQKIRAMYPFAM
                     IDEFQDTDLTQYEIFSQIFMAENAENGFIMIGDPKQSIYKFRGADIFTYLRAAKQADE
                     QFTLGKNWRSLPEVVQAVNNLFSFANDNSPFLYEDIGFHPVEADSQKGQLVSEQGHFV
                     GYITENSKLDDLAEMCAYQIHQQLEAMAQGKFGVEKNGEFQSFAAKDIAILVRKGSQA
                     KRIKKALAKRNIKSVYLAESASVFGSEIATELCWLLQAALNPYHYKALLSALGSTLWG
                     LTAAEIHRYKENEQLWDLKVNQFVEYSNIWKEQGVLPMLHKIYLEQGIIERLKGLENA
                     DRLITDLLHLTEILQETSQALESEAELLRWYEKQVNSPDFNDEQQLRLESEEELIKIV
                     TIHGSKGLQYPIVWLPFVSQKSEGDTQTALSLYRNSQGALDWCLGSEEASFSLQYEAY
                     AEDLRLLYVALTRAESQLNLVLPKEISGWSPLHYLLADGEIPTGKVPVSDYFSQKRIA
                     ANLVEVAGELPFSLWEGEQSSDDYQAKTFSGNIRVVGQITSFTSLYAQHERFSEGKSE
                     RVMDLAQDRDVHIETIEAGYSSETAAFSPFQFPHGIKVGTVLHHFFEHCQFNEQIDRE
                     AVAKVCEQLGLSEEWIEPTALWFERILTTPLAEANFCLKAIDETKRLNEWQFYLRLKN
                     DKALHQLNALLKQHSPLAKTLPELQLPQLEGFVRGFVDCIVQVEEKFYLIDYKSNFLG
                     YLPQNYAKEHIQREMGRQRYDLQYLLYTLALHRYLTARLGEKYDYERDFGGVAYLFLR
                     AMNGENDNGVYFDKPTKQLIEEMDRLFG"
     gene            complement(12263..12745)
                     /gene="greB"
                     /locus_tag="PXE26_001040"
     CDS             complement(12263..12745)
                     /gene="greB"
                     /locus_tag="PXE26_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HDL5593641.1"
                     /translation="MAKSNYITRSGWQALDQELKFLWREERPKVTQAVSDAAALGDRS
                     ENAEYIYGKRRLREIDRRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEEGEAK
                     QYRIVGCDEFDPAKNWISIDSPVARALIGKQVDDEIRVETPLGKVLLYINKIWYEQAS
                     "
     gene            complement(12796..14076)
                     /gene="pepB"
                     /locus_tag="PXE26_001041"
     CDS             complement(12796..14076)
                     /gene="pepB"
                     /locus_tag="PXE26_001041"
                     /EC_number="3.4.11.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase PepB"
                     /protein_id="HDL5593642.1"
                     /translation="MTAMKISLSTQNAPEIWGKNAILSANDAGFTVHNPNNDLATIQK
                     AARKIKNQGISTVELTGDSWDLESCWAFHQGFHSVKNQGSVQYPDLDEQQAEFDNRVK
                     CATFVRELINKPSDKLTPEKLAEQAVEFIQKMAKPNTVSYQIIRGEALQEQGYHGIWT
                     VGKGSANPPAFLVLDFNPTNDENAQVLACLVGKGITFDTGGYSLKPSDSMSTMRTDMG
                     GAALLTGSLAFAIARGLNKRVKLYLCCAENMVSHNAFKLGDIITYRNGVTVEVLNTDA
                     EGRLVLADGLIDACKQNPQFIIDAATLTGAAKVAVGNDYHSVLSMDDNLTEALFKSAK
                     TENEPFWRLPFEEFHRGQIASSFADIANIGSVPVGAGASTATAFLSYFVENYQQNWLH
                     IDASATFRKTASDLWAAGATGLGIRTVANLLLSK"
     gene            complement(14215..15036)
                     /locus_tag="PXE26_001042"
     CDS             complement(14215..15036)
                     /locus_tag="PXE26_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010869033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase, lipoprotein e(P4) family"
                     /protein_id="HDL5593643.1"
                     /translation="MKNIKLSAMSLTALFVLTACSHTHKNSDEHHQMVLQEQATLGIN
                     WMQQSGEYQALAHQAFNAAKVAFDQAKVKKGKKKAVVVDLDETMVDNSLYAGWQVKNH
                     KPFDGESWTRWVNARQTGAIAGAVEFNNYVNSHKGTMFYVSNRKDSSEKAGTIDDMNK
                     LGFSGVSEQTLLLKKDKSNKTPRFEEIEKQGYEIVLYIGDNLNDFGDATYRKSNAERR
                     AFVAENSQQFGKKFIMLPNPNYGDWEGGLDKDYYKGNAESRVKIRHNAIKAWDGK"
     gene            15184..16127
                     /locus_tag="PXE26_001043"
                     /pseudo
     CDS             15184..16127
                     /locus_tag="PXE26_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251085.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
     gene            complement(16240..17403)
                     /locus_tag="PXE26_001044"
     CDS             complement(16240..17403)
                     /locus_tag="PXE26_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDL5593644.1"
                     /translation="MKRKTLATLVLIAALGIGGYFYYQQQTNKPQIHYITQAVTRAEI
                     NKNVLATGSVRANKRTEVGAQVSGKIQKLYVELGQSVKQGDLIADIDSSNQSNTLSTA
                     QARLSSYKAQLTSAQVALEVAQSNYNRLNKLYRANSASLNDLETAKNTLASAKATVDN
                     IKAQLKSAEISVNDAKTNLTYTQIISPMDGVIVSVPVSVGQTVNSNQTSPTIVQVADL
                     SKMLIKLEISEGDIAQVKVGQKVKFSTLAEPNREYSATIDSVDPALTTLTDNNYTEQS
                     GNTEAVYYYANVSVDNADNSLRIGMTTQAQITIDKREQVLVVPTSVIKKRGKENYVLV
                     LENEQSVERKIQIGISDTQNTEVLAGLNEGDQVIVTQRADDEKISTARGPRMF"
     gene            complement(17469..>18274)
                     /locus_tag="PXE26_001045"
     CDS             complement(17469..>18274)
                     /locus_tag="PXE26_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDL5593645.1"
                     /translation="FRAIISDLDGTLLNANHKIGDFTIDTLEQLSKKGVDIFFATGRN
                     HPDVSQIIGKVNVKNAMLVTSNGARANNLEGKKILNHYLPEDLAFELMNIEFDDQNVC
                     LNSYQGDEWFINKEIAELKKFHQDSGFSYQVVNFAHHHGRNTEKVFFIGKTAEALVPI
                     EHYIRDTYGDRVQMTYSALLCLEVMAKGVCKANALAELVKLRGYTLADCIAFGDGMND
                     VEMLSLAGKGCLMGNADPRLKAVLPNNEVIGFNKDEAVASYLRATFGIV"
BASE COUNT         4950 a         3810 c         3958 g         5556 t
ORIGIN      
        1 cttattttac gtagttaatt ttttattaca aataataata atctagttaa tgataaagat
       61 caaactttct gatatattta gttttctaat ttttatcttg agattttttt aatcaaaaaa
      121 atgtagcagg tttgcttctg aagcgagagg aataggtatt cgagaaaaca agcggtcaga
      181 gttgcaaaat tttttactta tctgaccgct tgttgtatag ggaatattac tttatttcat
      241 tgatcacatt caaaatccgc ttatccgaaa tcgggtattt tgtgccgagc tgttgagcga
      301 acagactgac ccgcagttct tcgatcatat atcgaatttc cagtacctcg tccggcaccg
      361 ctttggattt tggcagtttg gcaaggagct gtttatatgc ctcttgcact gcttccaccc
      421 gtagcatttt ggctcggtcg gtgttgctgt ccaccaacag tttatccaaa cggcgttcga
      481 tagcggtcaa ataacggtat aaatctgcaa ggcgggcgta gccggttttg gtgacaaagt
      541 cggggtaaat cagcccttcg atttgggttt tgatgtcgct taacgcaaac gccatcgtaa
      601 aatcgagctt gccttttaac cgcttgttta gctcgtaggc cagtgtgagg cacttttcaa
      661 cctgtttggc aatttctacg gttttatcgt ttaaatttgc ccgcacaaat tcgtgcagtt
      721 gggtgaattt ttcctccgtc cagacaaacc cgccgaactc ttctaccagc tgatctaccg
      781 cacaggcaat gcagtcgtca atcagctcca atactttgcc gaacggggca aaatataagc
      841 ccagcttggc tttgttcggc agtttttcgt gtagatattt aatcggcgat ggcacattta
      901 gcaacagcag acggcgaagt cctgcctgca ttgcacgagc ctgctcaaat tccgtttcaa
      961 acagtttcac ccccacagcc gtttgttcat cgacaatcgc agggtaggct ttcacgctga
     1021 aatgggcttt tttctgctca tagaactgtg gcaattcggc aaaattccaa atatgcacac
     1081 cactttgctc aatgccgtca tcggcaatgt tggaaagggt gttctgcacc tcatctttca
     1141 aggcaaattt cagctcatca aggttttcgc tctcttgcag tttcttgcct ttatcatcaa
     1201 tcacacggaa agtcatccgc aaatgtggcg gcagttggct taaatcccac tgttcaggct
     1261 cgaccaatac acccgtcatt cggcgtagtt cgtggcttag attgtccagc aacggttttt
     1321 taaacggctc ggctcgccct aaaaaggcgt ccgcataatt cggcgccggc acaaaatttc
     1381 gccgtagcga tttcggtaaa gatttaatca gcgagacgat cagctcgtgg cgtagccccg
     1441 gaatttgcca atcgaaacct tcgggttcca cttggttaag cagcggtagc ggaatatgca
     1501 ccgtcacgcc atcgtgatct tttccgacct caaactgata gctcagtttg agttttaaat
     1561 cgccttgatg ccagaaattc gggaaatcca gctcgctggc aaggttggcg ttgtcgttga
     1621 tcaggaacga tttttcaaag ttcagcagtt caggatcttt tttgcttgcc tgtttccacc
     1681 aagtatcaaa atgcttgctc gacacaactt cggtgccaat ccgctgatcg taaaactcaa
     1741 acagcacctg ctcgtccacc aaaatatcac ggcggcggga tttgtgttcc aatgcctcaa
     1801 cttcacggat caagcggtga ttttctttga aaaatttgta attgttgtga cattcgcctt
     1861 ccaccaacgc cgagcggata aaaatctcac ggctgacggt tgggtctatc gagccataat
     1921 tcaccgagcg ttgtgccaca atcggaatgc cgtagagcga cactttttcc gatgccatta
     1981 ccgctccttt tgacttcgcc cagtgtggtt cgctgtaact ggatttagtg aggtgtactg
     2041 ccaacggttc cacccattcc ggctcaatgc gagcgaccat tcgtccccaa agtttggtag
     2101 tttccaccag ctctgcggcc attacccatt tcggctgttt tttgaaaagt gccgagttcg
     2161 ggaaaatgaa aaagtgggca tttcttgctc ctaaatagtg cattttttca ttatctttca
     2221 agccgatatg cgacaacaag ccggcgagca gggcggtgtg aatcggctga taacttgccg
     2281 gctcactgtt aatttttaag cccatttctc taactgcaag gcggagttgg tggtagatat
     2341 cctgccactc ccgcacacgg ttgtagttca aataatcctt acggcagaga ttacggaact
     2401 ggtttttcga cagttctttt tgttgggctt ggataaagtg ccacaaattc acaaaggcta
     2461 agaaatcgct ctctttatcg gcaaaacggc ggtgtttatc gtctgccgac tgctgttttt
     2521 cctgcggacg ctcacgaggg tcttggattg agagagctga cacaatcatc atcacttcgt
     2581 gcaacgaacc gtttttcgcc gcctcgatca ccattctgcc taagcgagga tcgactggca
     2641 gttgggcgag ttggcgaccg attggggtta atctaaaccc atccccccgt ttacgggggg
     2701 aggttgggag ggggggagtg ccatcattag aacggatttc ccccctccct agccctcccc
     2761 cgcaagcggt ggaggggatt ttttcatttg gaataatcgc ctgtaattct tccaacaacc
     2821 gaatcccgtc ctgaatttgt cggctgtcag gggcatcaac aaacgggaaa ttggcaatat
     2881 cactcaatcc aagcgaagtc atttgtaaaa taaccgctgc aaggttagtt cgtagaattt
     2941 caggatcggt aaattgtgga cggctgttga aatcctcttc tgaatagagg cggatacaga
     3001 tcccttccga ggttcgccca caacgccctt tccgctggtt ggcggaggct tgcgaaatcg
     3061 gctcaatcgg caagcgttgc actttggtgc ggtagctata acgagaaata cgagccgtgc
     3121 cggtgtcgat cacatattta atattcggaa tagtgaggga ggtttctgcc acgttggtcg
     3181 ccagaataat tcggtttagc ccaccgcttg gctggaaaat ccgttgttgt tcggcagccg
     3241 ataagcgggc gtaaaggggt aaaatttcgc tatgtcgcag ttcctgcttt tgcaaggctt
     3301 cggcagtgtc acgaatttcc cgttcaccgt tcataaaaat cagaatatcg ccacgccctt
     3361 cggcttgcag ttcgtccacc gcatttagaa taccttgcag ttgatcttga tcttccacta
     3421 tcgggcgata acgcacttcc accgggaatg tccgaccaga gacttcaata atcggggcgt
     3481 tgttgaaatg tttggaaaaa cgttctacat caatagttgc cgaggtgatg atcactttca
     3541 gatcggggcg tttgtgcaga atttgtttca gataacccaa aataaaatcg ttgttcagcg
     3601 aacgctcgtg agcttcgtca ataatcagcg tatcgtactg atttaaatag ctgtcgtgct
     3661 ggatttccgc cagcagaata ccgtccgtca ttagcttgat taagctgttt tcactgactt
     3721 gatcgttaaa gcggactttg taaccgaccg tctcgcccag ttccgatttc agctcttcgg
     3781 caatgcgagt cgccaccgaa cgtgcggcaa ttcggcgggg ctgggtatgc ccaatcaagc
     3841 ccttcacccc acgcccgagt tctaagcaca ttttcggtaa ctgggtggtt ttgcccgaac
     3901 cggtttcccc tgcgatcacc accacctgat tttcgctaat cagttttaaa atttcctcac
     3961 ggcgagcgga aacaggcaga tcagggtagt caattttcag gttttgggcg tgctgagttc
     4021 gtgcgaaaaa acgtgcctga caagcggtga gatcttgcga aatttctgcc aaaactgacc
     4081 gcttgtgatc gatgttttta atattttccg ccccttttaa gcgaccgagc aggcggcgga
     4141 aatcggcggt ggtgatattt tccagcttca caagcggtgg tttcttatga tttttttgca
     4201 aaggtgtttc catttaattt ctcttttgca ttaagacctt gtgatttatt gtagggtggg
     4261 cgtaagccca cgtaacagaa tagggatttt atgcgtggac ttacgtccac cctacattag
     4321 gttttaccaa caatcagtga caaaatccct gccgcaatca acggcccgac cggtacgcct
     4381 tttaagaacg ccacgccgat caccgtgccg attaaaagcc cagttaccaa caccggctgg
     4441 ctgcccatta aattcacgcc cctgccacct agccacgcta ccagcacgcc agcaattatt
     4501 gagagtgcca ttttccagtt caatagttgg gcaagttcgg gaagcgtaat tcgccctgaa
     4561 accaaggggc taagtacgcc gatggttaaa atgataatcc cgatttttaa gccgtattga
     4621 tcgacaaagg ggataaattt agaaagtaag gtttgttgca taatcagcaa tacggcggct
     4681 gaaatagtaa ccgcactgtt ttggctgatc agccctaaaa taatcagcac cacaagtaga
     4741 agtgccactg cgttaaattg taaagtcata ggattaaaac gtaaaaaccc ttacttcata
     4801 gaagtaaggg agtggttaat taaacgttga gctagttaat aaatttcatt attgccatta
     4861 aaaagccaag aattgtgata tttaaggtaa ttgctttaaa tatcgtggta ttgatttcat
     4921 tttttagctt ttcaagttca agttgcaaat cagcttttgt tgctagtggg ctttgacttt
     4981 gctctaaggc ttcatcgaga gcattagcaa atgcctcagc catttcaggt gtttgattgg
     5041 cttcttgcaa gcgttttaca aaacgtaatt tgtcaaatcg taggctcata gctgcatcca
     5101 tttcaattat cctcttgtgg ttaagttata aactaattta gcataatcac aagcaggaat
     5161 tttaggagat tttgtgatct tcgtcgaaaa tcgacaattt agtttgccac catcaccatt
     5221 gccgggcgaa tcactcgtcc gtgaagcgtg tagccttttt gtagcactgt gctgacatgg
     5281 ttggcttcaa ttccttcggc aggttgcatt gaaatagctt cgtgcaattc agggttaaat
     5341 gcctcgccta cttcgccaat tgccaccaca ccaaatttag ccagtgtatt gatgaattct
     5401 ttatgagtca tttcaacgcc gtcaactaac gcttgagtgg tttcatcggt cacggcttta
     5461 tcaagggcat ctaatccacg ttcaaggtta tcaaccactg ttaacaattc tttggagaat
     5521 ttttctaaag cgaatttgtg agctttttca acatcttgct ctgcacggcg gcggatattt
     5581 tgaatttctg cttgagccct aagctgaata tcttgctcac gtttgtcggc ttctgcaata
     5641 taggcttcta actcggcaat tcgagcttga gcgagagcta acggttcttc ttgaggtgta
     5701 ttttgttctt ccgcttgagt ttcttcagtt acaacttcag gttgaatttc ttcttgtttt
     5761 acttcttctt gtaagtgttc attttgagtg gtcatttttt atcctttaaa agactaatct
     5821 ggaaatgtaa atcttcctta atatagcgat aaattaaggg atttcaagca tatctctttc
     5881 tttttgcgaa aataattcac tttttaatca gaaaaggctt gcaaaatacg ggggggggct
     5941 taaaatgccc tagtcttttc cgcccttagg caaggctata ttttttaatc acttttcttt
     6001 aacggagaaa acttaaatga aaaaattagc gggtttattt gcagcaggtt tagcaacagt
     6061 tgcattaaca gcgtgtaatg aagaaaaagc ggcagagcca aaagcaactg cggctgaagc
     6121 aaaacctcaa gcaacaaatc aaacagttca cctttatact tggactgaat atgtgcctga
     6181 aggtttgtta gatgaattta cgaaagaaac cggcattaaa gttgaagttt caagtcttga
     6241 atctaacgaa acaatgtacg ctaaattaaa attacaaggc aaagatggcg gttatgatgt
     6301 aattgctcca tcaaactact ttgtatctaa aatggcgaaa gaaggaatgt tagcggaatt
     6361 agatcacgca caacttccgg ttattaaaga attaaaccaa gattggttaa ataaacctta
     6421 cgatcaagga aacaaatatt cattacctca attattaggt gcgccgggta ttgcatttaa
     6481 tacggcagat tacaaaggtg aaacattcac ttcttggggt gatttgtgga aacctgaatt
     6541 tgcaggtaaa gtacaattat tagatgatgc tcgtgaagta ttcaacattg cgttattaaa
     6601 attaggtaaa aacccaaata caactaatcc ggatgaaatc aaagaagcct ttgaagagtt
     6661 gaaaaaatta cgtccaaatg tgctttcatt tacctctgat aacccggcaa actcatttat
     6721 tgctggtgag gtttctgtag gtcagttatg gaacggttct gtacgtattg cgaagaaaga
     6781 aaacgcaccg gttgatatgg tattcccgaa agaaggtcct gtgctttggg tcgatacttt
     6841 agccattccg gcaaatgcga aaaacaaaga aaatgcacat aaattaatca actacttatt
     6901 aagtgcaaaa gtagctgaaa aattaacgtt agcgattggt tacccaactt caaacgtaga
     6961 agcattaaaa gtattaccga aagaaattac tgaagataca gcaatttacc catctgcaga
     7021 ggttttacaa aaatctcaat ggcaagatga tgttggtgat gcaattgagc tttacgaaaa
     7081 atactaccaa gagttaaaag cagcaaaata atagctgatt aattctgaag cctctaggga
     7141 gcaatcttta gaggctttct cttttgagtt gcaaaaaatt tggcaaaaac gaccgctttc
     7201 taaggtacaa tcataaaaac atacttagat tttgagagat taaaccatga acttaagatg
     7261 gcaagaatat cctgaaaatg cccgcaaatt atttaaacta tccctaccca tttttatttc
     7321 tcagctttca gcttccggaa tggggctggc ggatattgta atggctggct tggtgagtga
     7381 tgatgatgtc tcggcgattg cggtaagtaa ttcgatttac tttccgctct ttctgtttgt
     7441 gtcagggttg ctgaatgcaa ttaccccaac cgtttcttac ttaaacggct cgagcaatcg
     7501 ccatttaatt gctaaccaag taaggcaggg ctattggatt gtgtttgcaa tgtctattcc
     7561 attaatggca attttcctaa acagccatct gattttagac ttaatgcaaa caccggctga
     7621 gttttcaatc aaatcgcaac aatatttagc agtaatggca gttgggctta ttcctgcttt
     7681 gctggcggtg agtttacgtt gtatgaacga tggattatct aaccctaaac ctgcgatgcg
     7741 gattaccttt ttcggtttat tgctgaacat tccgctaaac tatattttca ttttcggcaa
     7801 atttggcttg cctgaaatgg gagcggtagg ctgtggtgta gcaaccgcaa ttgtgaactt
     7861 gattatgttt tttatgttgt tgcattattg ctacaccaat tctgcccaaa aagatattcg
     7921 tttgtttgag aaatggattg atgctccaag cggtcaaatt ttgctaaaac tttgcaaatt
     7981 agggctgccg attgcctttg cgatttttac cgaagtgatg ctgttttcga cctcatcgct
     8041 gtttctgtca ccacttggtt cacaggtggt ggctagccac caagctgcat tgcaaaccag
     8101 ctcgctattt tttatgattc cgatgtcgtt tggcattgca accaccatta tgatcggaca
     8161 aacacttggg cagaaaaatg tggagggggc gaaaatctta agttaccacg cactgattac
     8221 cgcaaccgct ttagctatta ttgccgccat cattattatt ttgttgaaaa attttatccc
     8281 ttttgcgttt accaacaacc cgatttcgat tgcgattacc gctcatttat tgatttttgc
     8341 ggcggtttat caaataccgg atgccattca agcggtagca aacggcattc tgcgtggtta
     8401 taaacatacc caaccgattt tatacgttac tctgttttgt tattgggggg tgagtatgcc
     8461 gctgggctac attttggcaa gaaccgattg gattgtacaa ccaatggctg ctcaaggttt
     8521 ttggttagtc ttttgtatcg gcttaagttt ggctggtggc ttgttattat ggcaaatgcg
     8581 aaaaatacaa gcggtgccaa aagcacaatt aattgcaaaa ttagaacgga ttaaataaca
     8641 gattctctgc tatggaacat agcagtgctt tttactttta gaagataact ttgctgatga
     8701 aaaacctaaa tcctatccaa ctacctttga ataaatccgt tttaatcgaa gcgtcggcag
     8761 gtacagggaa aacctttacc attgccaacc tgtatttgcg tttattgctc ggcattggtt
     8821 gcaacccgtt aacggtggaa caaattttgg tggtgacatt taccaaagca gcaaccgaag
     8881 agttgaaaaa ccgtatccgt aaaaatattc agcaatgtgc cgacttttta aaagatcaag
     8941 ctgatggttt ggaagtggaa agtacaaaat cctatcgaaa caaccttgat tttttggcac
     9001 agatttatcc gctcattccg aatattcacg aagcattgtt acgtttaagt attgccgaac
     9061 gggaaattga taccgccagc gtgtttacca ttcacggctt ttgtcaaaaa atgctggttc
     9121 agtttgcgtt tgagtcgggc gtgcggtttg acttggattt acagccaaac caaagtgatc
     9181 tacttaaaaa attaagtgaa gaagtctggc gagagcaatt ctatccgcaa gatttagcca
     9241 tcacttatgc ggttgccgaa caacttggta cgccggaata tgccctcaat gcggtaaggc
     9301 gttatttatc tactgaatta cctgaaccaa atgcctcttt aaatcaagat attgccgagc
     9361 atttggctca atatcagcag tttattaatg aggtgaaatc ctattggaaa acgcattcag
     9421 atgaactggt tgaaactatc cgccacgatt taaagcataa aattacgctg cacggaggtt
     9481 ggtatcgagc gaccactttt gaagccggtg tggaagtgat gaaccagtgg gctaattcgc
     9541 aacataacca tttcccggca gggctttatt tattcactac agagaaaatt gcggctggca
     9601 cgaaaaagag ctgtgagccg atagattccc ctcatcttgc aaaaaatcag gcttttttga
     9661 ccgcttacaa ggaacgtttt gaaaacagct tgtcagcaat gttgcagtat caatttttaa
     9721 ttgctctcaa agcaaaattg gcagagtaca aacaatcgca cccacaacgc agttttgatg
     9781 atttactcac aatgctaaac caagcgttga aaaatctaca cacgggcgaa gccttgtctc
     9841 agaaaattcg ggcgatgtat ccttttgcga tgatcgatga gttccaagat accgatttaa
     9901 cccaatatga aattttcagc caaattttta tggcagagaa tgcagagaac ggctttatta
     9961 tgattggcga cccgaaacag tcgatctata aattccgtgg ggcggatatt ttcacgtatt
    10021 tgcgagcagc aaagcaggct gatgaacaat tcacattggg caaaaactgg cgttcgttgc
    10081 ctgaagtggt gcaagcggtc aataatttgt tttcttttgc aaatgataac tctccgtttc
    10141 tttatgagga tattggcttt cacccagtgg aggctgatag ccaaaaaggt cagttagtta
    10201 gtgagcaagg gcattttgta ggctacatca cggaaaacag taaattagat gatttggctg
    10261 aaatgtgtgc ttatcaaatt catcaacagc ttgaggcgat ggctcaaggc aaattcggag
    10321 ttgaaaaaaa cggcgaattt caatcctttg ctgcaaaaga tattgcgatt ttagtccgaa
    10381 aaggttcaca agctaagcga atcaaaaagg cgttggcaaa acgtaatatc aaatccgtct
    10441 atttagctga atcagcttct gtatttggtt cggaaattgc aacagaattg tgttggttat
    10501 tgcaagccgc actgaatccg tatcattaca aggcattatt atcggcgtta ggctcaacct
    10561 tgtggggctt aacggcggca gagatccacc gctataagga aaatgagcaa ctttgggatc
    10621 tgaaagtcaa tcagtttgtg gaatacagca acatttggaa agagcagggc gttctgccga
    10681 tgttgcataa aatctacttg gagcagggca ttatcgaacg tttgaaaggt ttggaaaatg
    10741 cggatcgctt gattacggat ttattgcatt taaccgaaat tttgcaggaa acctcgcaag
    10801 cgttagagtc tgaagctgaa ctgttgcggt ggtatgaaaa gcaagttaat tcgcccgatt
    10861 ttaatgacga gcaacaactt cggttggaaa gtgaagagga gctaatcaaa attgtgacga
    10921 ttcacggctc gaaaggcttg caatatccaa ttgtttggtt accttttgtt tcacaaaaaa
    10981 gtgagggaga cacgcagaca gcattaagtt tatatcgcaa ttctcaaggt gcgctggatt
    11041 ggtgtttagg ctcagaagag gcaagttttt cgctacagta tgaggcttat gcggaagatt
    11101 tacgtttgct gtatgtggca ttaacccgcg cggaatctca gcttaactta gtgttgccga
    11161 aagagatttc cggctggtct ccactccatt acttgttagc agacggggaa atacctacag
    11221 gaaaagtgcc tgtttcagat tattttagcc aaaaacggat tgctgctaat ttggttgaag
    11281 tagccgggga attacctttc tcactgtggg aaggagaaca atcttcagac gattaccaag
    11341 caaaaacctt tagtggcaat atccgtgtgg ttggtcaaat taccagcttt acttcacttt
    11401 atgcccaaca cgagcgtttt agtgaaggga aatcagaaag ggtaatggat ttagcccaag
    11461 atcgagatgt acatatagaa accattgagg caggttattc aagtgaaact gccgctttct
    11521 cgccattcca attcccacac ggtattaaag tgggcacggt gttacatcac ttttttgagc
    11581 attgccaatt taacgaacaa attgatagag aggctgttgc taaagtatgc gagcaattag
    11641 ggctaagcga ggaatggatt gaaccaacag cattatggtt tgagcgtatt ctaactaccc
    11701 ctttggcaga ggcaaatttc tgcttaaaag cgattgatga aaccaaacga ttaaacgagt
    11761 ggcaattcta tttacgctta aaaaatgata aagccttaca tcaattaaat gcgttattaa
    11821 agcaacatag ccctttagca aaaactttac ctgaattgca attaccgcaa ttagaaggtt
    11881 ttgtgcgagg ctttgtagat tgtatcgtgc aagtggagga gaaattctac ttaattgatt
    11941 acaaatcgaa tttcttaggc tatctgccac aaaattatgc gaaagaacac attcaacggg
    12001 aaatgggcag acaacgctat gatttgcaat atctgcttta cactctcgcc ttacaccgtt
    12061 atctaactgc ccgtttaggt gaaaaatacg attatgaacg agacttcggc ggagtggctt
    12121 acttgttctt aagggcaatg aacggcgaaa atgataacgg cgtttatttt gacaagccga
    12181 ctaagcagtt gattgaagaa atggatcggt tgtttgggta aatatgtgta ggggcgaaaa
    12241 tttttcgccc ctttatgggt aattaactcg cttgctcata ccaaatctta ttgatataaa
    12301 gcaacacttt accaagcgga gtttctaccc taatttcatc atcaacctgt ttgccgatta
    12361 aggctcgggc gacaggggag tcaatcgaaa tccagttttt tgctgggtcg aactcatcgc
    12421 aaccaacaat acggtactgt tttgcctcgc cctcttcatt ttctaattcc acccaagcgc
    12481 cgaaaaagac tttgccttct tgtttagggt gataatcaac aatttgtagc acctctagcc
    12541 gcttagataa aaaacgcaca cggcggtcga tttctctcaa acggcgtttg ccgtaaatat
    12601 attcggcatt ttcgcttcga tcacccaatg cggcagcatc agacaccgct tgagtcactt
    12661 tcgggcgttc ttcccgccat agaaatttta attcctgatc taaggcttgc cagcctgaac
    12721 gggtaatgta atttgattta gccatagtta tttaattgtt tatggagcaa atagtgattt
    12781 gcccctacga agtttctatt ttgaaagcaa taaattcgct actgttctta ttcccagtcc
    12841 ggttgctcct gccgcccata aatcgctcgc cgttttgcgg aatgtggcag aggcgtcaat
    12901 atgtagccag ttttgctggt agttttctac aaagtaagat aaaaatgcgg tggcggtact
    12961 tgccccagcc cccaccggca cagagccgat attggcgatg tctgcaaagg aagaagcaat
    13021 ttgcccacgg tgaaattctt caaacggtaa acgccagaac ggttcatttt ccgttttggc
    13081 agacttaaat agtgcttcgg ttaggttgtc gtccattgaa agcaccgagt ggtagtcatt
    13141 gccgactgcg acttttgctg ctcctgtgag ggttgcagca tcaataataa attgtggatt
    13201 ttgcttgcac gcatcaatta aaccatcggc aagcactaaa cgcccttcag catcggtgtt
    13261 taaaacttca acagttacgc cattgcggta agtgataata tcgcctaatt tgaacgcatt
    13321 gtggctgacc atattttccg cacagcagag gtagagtttc actcgtttat tcaagcctcg
    13381 agcaatggca aaagcaagtg agccggttaa aagtgccgct ccgcccatat cggttcgcat
    13441 tgtgctcata ctatcgcttg gttttagact ataaccgccg gtgtcaaagg taatgccttt
    13501 gccgaccaag caagccagta cctgtgcgtt ttcatcgttg gttgggttga agtctaatac
    13561 taagaatgca ggcggattgg cagagccttt tccaactgtc caaatgccgt gatagccttg
    13621 ttcttgtaat gcttcgccac gaatgatctg gtaagaaacc gtattcggtt ttgccatttt
    13681 ttggataaac tcgaccgctt gttcggctaa tttttcaggg gttaatttat ctgatggctt
    13741 attaattaat tcacgcacga aagtggcaca ttttacacgg ttatcaaatt cggcttgctg
    13801 ttcgtctaag tctgggtatt gtaccgagcc ttgatttttt accgaatgaa atccttgatg
    13861 aaacgcccag caggattcta aatcccaact atcgccggtc agctccacgg ttgaaatacc
    13921 ttgattttta attttgcggg cggctttttg aatagtggct aaatcgttgt tcggattatg
    13981 tacggtaaac cccgcatcat ttgcggaaag aatagcattt ttaccccaaa tttcaggggc
    14041 gttttgagta gaaagtgaaa ttttcattgc tgtcattatc ggtttcctta gaaaatggat
    14101 tttgctttat cctaacaaac ttttgcaaag ttttatacaa aaatgaccgc ttgcagagca
    14161 tagccttgac aagcggtcat tgtttcgtgt ttttacaacc tgattaagga cggattattt
    14221 gccgtcccaa gctttaattg cattgtggcg gattttaaca cggctttcag cattgccttt
    14281 gtagtaatct ttatctaaac cgccttccca gtcgccatag ttcgggttcg gtaacataat
    14341 gaatttttta ccgaattgtt ggctgttttc ggctacgaat gcacggcgtt ccgcgtttga
    14401 tttacggtaa gtcgcatcgc cgaaatcgtt taagttgtcg ccaatataga gcacgatttc
    14461 atagccttgt ttttcgattt cttcaaagcg aggggttttg ttcgatttgt cttttttcaa
    14521 caagagtgtt tgttcgctca caccactaaa gcctaatttg ttcatatcat caatagtacc
    14581 ggctttttca ctgctgtctt tacggtttga aacatagaac atagttcctt tgtggctatt
    14641 aacgtagttg ttaaattcca ctgcaccggc aatcgctccg gtttggcggg catttaccca
    14701 acgagtccag ctttcaccat caaacggctt gtggttttta acctgccagc cggcataaag
    14761 gctgttgtcc accatagttt catctaaatc tactaccacg gcttttttct tgcctttttt
    14821 cactttggct tggtcgaatg ccactttcgc tgcattgaat gcttgatggg caagagcttg
    14881 gtattcgccg gattgttgca tccagtttat ccctaatgta gcttgctctt gcaacaccat
    14941 ttgatgatgc tcatcgctgt ttttatgcgt gtgcgaacaa gcagttaata caaataaagc
    15001 tgtgaggctc atagcagaaa gtttgatgtt tttcatacgt atatccttag ttttattgtt
    15061 gataaacaga gcgattatac ctaaaaagag ttgcttatgg ctaatagttt attgctccta
    15121 ttcactttta aagcaaacta aggtagccta gtaacctttt tataacaatt acacagaggc
    15181 tatatgcaaa cattattaaa atttacacaa tttatcagca aaaccttcgc catttgggtg
    15241 gtgttttttg cttttatcgc agcacaattt ccggaaacct ttaagcaatt cctgccttgg
    15301 attccttatc tgttagggat tgtgatgttg ggaatggggt taaccttaac tttcaaagat
    15361 tttgccgagg taacgaaaaa tccgaaatca gtgattatcg gcgtgatcgc tcaattcgtg
    15421 gtatgccgag tgtagcttat ggattggcaa aagcatttaa cttacccgca gatttagcca
    15481 ttggtgtgat tttagttggt tgttgcccgg gcggtacttc ttcaaacgtg atgacctatt
    15541 tggctcgtgg caacacagcg ttatcggtag cttgtaccac tatttcaact ttacttgccc
    15601 cagtgctcac gccggcaatt ttctatttat ttgccagcca atggttagaa attaatgcaa
    15661 cggcaatgtt tatttcggtg ttgcaaatgg tgctattgcc aatttttgtg ggcgtggtga
    15721 ttcgtactat tttcaaacaa aaagtagagc aatttagcca aacaatgcca ttaatttcag
    15781 tgattgcaat cgtattaatt gtcacggcgg tggtgtcagt tagccgagat cgtattattg
    15841 aatccggttt attaattttt gcggtagtag cattacacaa cggtttaggt tatttaatcg
    15901 gttatttggc gagccgttta ttaaaattac cgattgcaga cagcaaagcg gtggcgattg
    15961 aagtggggat gcaaaactca ggattggggg cagcacttgc cgcattacac tttaaagcca
    16021 accctatcat tgcggtgcca agtgcggtat ttagcttctg gcacaatatt tcaggcccga
    16081 ttttggcgat gattttcgct aaaatgaaaa acgataacga aaaataaaat tcgttttaat
    16141 acagacgttt taatgtttta ataaagaata gacaaacggt taaatttttc taattttttg
    16201 caaaatgttc agaaaattta accgcttgtt gtttagaatt tagaacattc ttggtccacg
    16261 tgcagtgctg attttttcat catccgctct ttgggtaaca atcacttgat caccctcatt
    16321 taagcctgct aatacttcgg tattttgcgt atccgaaatg ccaatttgga tttttctttc
    16381 aaccgactgc tcattttcca gcaccaacac ataattctct ttaccacgtt ttttgattac
    16441 gctggtgggt acaactaaaa cctgttcccg tttatcaata gtaatttggg cttgagtagt
    16501 cattccgatg cgtaaactgt tatcggcatt atcaacggaa acattagcgt agtaataaac
    16561 cgcttcggta ttacccgatt gttcggtgta gttattatcg gtcagcgtgg tgagtgccgg
    16621 atcaactgaa tcaatggtag cactatattc tcgatttggc tcagcaaggg tggaaaactt
    16681 aactttttgc ccgactttaa cctgtgcaat atcgccctcc gaaatttcaa gtttaatcag
    16741 catcttagat aaatctgcta cctgtacaat agttggcgaa gtttgattgg aattgaccgt
    16801 ttgcccgaca gaaaccggta cagacacaat cacgccgtcc attggcgaga taatttgcgt
    16861 ataagttaag ttggttttag catcgtttac cgaaatttca gccgatttta attgtgcttt
    16921 aatgttatcc accgtggctt tggctgaagc taaggtattt ttagccgttt caagatcgtt
    16981 taaagaggca ctatttgccc gatagagttt atttaagcgg ttgtagttcg attgagctac
    17041 ttcaagtgca acctgtgcag aggtgagctg tgctttataa gaagaaagcc gggcttgagc
    17101 ggtgcttaag gtgttgctct ggttgctgga atcaatatct gcaattaaat ctccttgctt
    17161 caccgattgc ccgagctcga catagagttt ttggattttg cccgaaactt gagcccccac
    17221 ttcggtgcgt ttattcgctc gaaccgaacc ggttgccagc acatttttgt taatttctgc
    17281 ccgtgtgaca gcttgggtaa tgtaatggat ttgcggttta ttggtttgtt gctgataata
    17341 aaaatagccg cctattccga gagcggcaat tagcacaaga gtggctaatg ttttacgttt
    17401 catactgttc cttgatgata tacaagcggt caaatttaga caaaaatttg caaaaaagtt
    17461 gctctcaact aaacaatgcc aaatgtggct cgaagatagc ttgccaccgc ttcatctttg
    17521 ttaaagccaa tcacttcatt attcggtaat acggctttta aacgtggatc ggcattaccc
    17581 attaaacaac ctttgccggc taaacttagc atttccacat cattcatacc gtcaccaaaa
    17641 gcgatacaat cggctaaggt gtagccccgt aatttgacca attcggcgag agcattggct
    17701 ttacacactc cttttgccat cacttcaagg caaagtaggg cagagtaggt catttgcaca
    17761 cggtcgccat aggtatcccg aatataatgt tcaatcggta ctaaagcttc agcagttttg
    17821 ccgataaaaa acactttctc ggtatttcga ccgtgatgat gagcaaaatt tactacttga
    17881 tagctaaatc ctgaatcttg atggaatttt tttaactctg caatctcttt attgataaac
    17941 cattcatcgc cttgatagct gtttaagcac acattttggt cgtcaaattc aatgttcatt
    18001 aattcaaagg caagatcttc cggtaaataa tggttgagaa tttttttacc ctctaaattg
    18061 ttggctcttg ccccgtttga agtgactaac attgcatttt taacgtttac tttcccaata
    18121 atctgagaca catctggatg attgcgaccg gtggcgaaaa aaatatcaac accttttttt
    18181 gatagttgtt ctaatgtatc aatagtgaaa tcaccaattt tatgattggc atttaatagt
    18241 gtgccatcaa gatcggaaat aattgcacga aatg
//
LOCUS       DANLZD010000042        18174 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.042, whole genome shotgun sequence.
ACCESSION   DANLZD010000042 DANLZD010000000
VERSION     DANLZD010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18174)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18174)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18174
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.042"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            94..357
                     /locus_tag="PXE26_001046"
     CDS             94..357
                     /locus_tag="PXE26_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5593646.1"
                     /translation="MSTLEDIKKTAKDWHRADIIAALHKAGWSLRQLSLKHGYSQSST
                     LKNAVDRPWLKGERIIAEAIGISPEEIWPERYAQRNHKKFADR"
     gene            373..903
                     /locus_tag="PXE26_001047"
     CDS             373..903
                     /locus_tag="PXE26_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5593647.1"
                     /translation="MSENSLKTHYSAKELAELSLACLPKTKQGVLYQAKKQGWTTHKK
                     VGVGGEILEFALSNLPQEIQTEIRSRFMSAVVEAKPKKLPAVRAEVDVGNLTTKQREI
                     ADARMALVAYVLELEGSMSRIKAITYLCNLAKQGEMPPHLVELVAVANAKKTAKRTIV
                     PIFSPIMPDFPLDSRD"
     gene            complement(919..2046)
                     /locus_tag="PXE26_001048"
     CDS             complement(919..2046)
                     /locus_tag="PXE26_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HDL5593648.1"
                     /translation="MNKLKSINLQVYIMLIAIVVIMSFFSIATDGAYLSARNISNLLR
                     QTSITGILAIGMVFVIISAEIDLSVGSLMGLLGGFAAISNVWWGWPLSLTIIVTLILG
                     VMLGAWSGWWVAYQKVPSFIVTLAGMLAFRGVLVGLTNGTTVSPISNEMTTIGQGYLP
                     DMVGMILGTIGIFCFIVWGSYQRKARQKLNLTVPSMSKDTLKYGLVAIIVLGAIYLLN
                     DYRGVPFPVLVLVILAIAGTFLARKTAFGRHIYAIGGNIDAARLSGISVEKVKLAIFA
                     LNGLLVAIAGLILSSRLGAGAPSAGQNAELDAIAACVIGGASLAGGIGSIYGVVIGAF
                     IIALLDNGMSMLDVPTFWQYIVKGGILLLAVWVDTISKKKA"
     gene            complement(2050..3564)
                     /gene="xylG"
                     /locus_tag="PXE26_001049"
     CDS             complement(2050..3564)
                     /gene="xylG"
                     /locus_tag="PXE26_001049"
                     /EC_number="7.5.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter ATP-binding protein"
                     /protein_id="HDL5593649.1"
                     /translation="MAKLLEMKNITKKFGEVVALNNISISLETGEILSLCGENGSGKS
                     TLMKVLCGIYPAGDYEGEIYFSGEKLIARNIKDTEEKGISIIHQELTLVKNMSILENM
                     FLGNEITKSGITDDNEMYLRCKTLLEQVQLDIDPNTKVGELGLGQQQLVEIAKALNKQ
                     VRLLILDEPTASLTEKETEILLSLIKDLQAHNIACVYISHKLNEVKAISDKICVIRDG
                     EHIGTRSAEGMSEDDIITMMVGREITSLYPHEPHNIGEEVLRVENLTAWHPTNTHIKR
                     VDNANFVLRQGEILGIAGLVGSGRTEMAQCIFGSYQGKYQGDIFLHKQPIKIKNCAQA
                     IENHIVMVPEDRKKHGIIPIMGVGKNITLSSLPQFCFGKKVINEPLEETIINQSIAKL
                     KVKTSSPELAIGRLSGGNQQKAILAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ
                     LAKEGMAIIVISSELPEVLGISDRVLVMHQGKIKADLINQDLTQEKVMEAALKE"
     gene            complement(3631..4632)
                     /gene="xylF"
                     /locus_tag="PXE26_001050"
     CDS             complement(3631..4632)
                     /gene="xylF"
                     /locus_tag="PXE26_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005576719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5593650.1"
                     /translation="MKLKSKLLAVATATLMVLSNASVAKDLKIGMSIDDLRLERWQKD
                     RDIFVNKAESLGAKVFVQSANGDATAQISQIENMLNKDIDVLVIIPFNGEVLSNVIAE
                     AKKEGVKVLAYDRLINNADVDFYVSFDNEKVGELQAKSIIGQKPEGNYFLMGGSPVDN
                     NAKLFRKGQMKVLQPLIDSGKIKVVGDQWVDSWLAEKALQIMENALTANKNNIDAVVA
                     SNDATAGGAIQALSAQGLSSKVAISGQDADLAAIKRIIAGTQTMTVYKPITNLADKAA
                     EIAVALGKDEKVEMNAQLNNGMKEVPAYLLEPVVVTKENIDDTVIKDGFHTKDAVYK"
     gene            4874..6193
                     /gene="xylA"
                     /locus_tag="PXE26_001051"
     CDS             4874..6193
                     /gene="xylA"
                     /locus_tag="PXE26_001051"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HDL5593651.1"
                     /translation="MSNYFDKISKVQYEGANSTNPFAFKHYNPDEVVLGKTMAEHLRL
                     AVCYWHTFCWTGNDMFGVGSLDRSWQKTGDLLQGAKQKAEIAFEFFQKLGIPYYCFHD
                     VDVAPEGNNFKEYQHNFNTIVDILEQKQAETGVKLLWGTANCFTNPRYMSGASTNPNP
                     EVFAWAAAQVFTAMNATKRLGGENYVLWGGREGYETLLNTDLKREREQIGRFMQLVVE
                     HKHKIGFNGTLLIEPKPQEPTKHQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAG
                     HTFQHEIATATALDIFGSIDANRGDPQLGWDTDQFPNSVEENTLVMYEILKAGGFTTG
                     GFNFDAKIRRQSTDPYDLFHAHIGAIDVLALSLKRAAKMLEDQALQKVVDNRYAGWNQ
                     DLGLQILNGKASLEDLAKIVETQGLDPKPVSGQQEYLENLVNSYIYR"
     gene            6346..7791
                     /gene="xylB"
                     /locus_tag="PXE26_001052"
     CDS             6346..7791
                     /gene="xylB"
                     /locus_tag="PXE26_001052"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HDL5593652.1"
                     /translation="MYIGIDLGTSGVKVVLLDENQHIIAITQKSLPIFRPHPLWSEQN
                     PQDWWNATNEAMLELSATQDLQAVKAIGLTGQMHGATLLDNADNVLSPAILWNDGRSF
                     MECEELEQLVPNSREITGNLMMPGFTAPKLRWVDKHQPDIAEKVSKVLLPKDYLRLLM
                     SGEYASDMSDASGTMWLDVGKRNWNKSLLNACGLDIENMPKLFEGNQITGYLRPTLAE
                     QWKMKSVPIVAGGGDNAAGAIGIGLYQTGQAMLSLGTSGVYFVVSDKFQANPQKAVHS
                     FCHALPDRWHLMSVILSAASAVDWAVKSLGLKDVSTLFQQVEASQTASDAIFLPYLSG
                     ERTPHNDPYAKGVFWGLSHNDNQITMAKAVIEGVSFALAEGIEVLHETGVVADNIALI
                     GGGAKSVYWRQLLADISGKTFEYRTSGDVGPALGAAKLAQIALNPNQDIATFCQPLPL
                     EQVYQPTPARYAEYQQKRQKFTELYRRLKGL"
     gene            complement(7854..8177)
                     /locus_tag="PXE26_001053"
     CDS             complement(7854..8177)
                     /locus_tag="PXE26_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QacE family quaternary ammonium compound efflux
                     SMR transporter"
                     /protein_id="HDL5593653.1"
                     /translation="MNVWILLAISICLEIAATNLLKLSNGFTKAIPTIGSLALYGLSF
                     YFLSIIFRTLPVGIVYAIWSGVGIVLTALVAYFAFGQKIDLAGLIGISLIIAGVLVIN
                     LFSKV"
     gene            8301..8843
                     /locus_tag="PXE26_001054"
     CDS             8301..8843
                     /locus_tag="PXE26_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase family protein"
                     /protein_id="HDL5593654.1"
                     /translation="MAQVYIVHGYTANADKHWFPWLEQELAKCGVSCERLNMPDSAKP
                     SLDGWLNHLAQNVELTDQTVFVGHSLGCIAILNFLAKNYAKIKGAVFVSGFYQPVENL
                     PELSAFTNYYAILPSVSSFPSYVVSALDDKVVNHQYSDALAQHLHADYIRLNQGGHFL
                     DREGVTELPVVLELVKKLLE"
     gene            complement(9014..9838)
                     /gene="dapF"
                     /locus_tag="PXE26_001055"
     CDS             complement(9014..9838)
                     /gene="dapF"
                     /locus_tag="PXE26_001055"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HDL5593655.1"
                     /translation="MQFSKMHGLGNDFMVVDGVTQNVYLTEEMIRTLSDRHRGIGFDQ
                     LLLVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIHVSTAKG
                     KMVLSLQEDGKVRVNMGEPIWEPSQVPFTANKFEKNYILRTELQTVLCGVVSMGNPHC
                     VLQVDDVKTAPVNELGPLLESHERFPERANISFMQVVNRNHVKLRVYERGAGETQACG
                     SGACGTVAVGIMQGLLDNKVQVDLPGGTLIIEWQGVGHPLYMTGDATHIYDGFIKL"
     gene            9987..11309
                     /locus_tag="PXE26_001056"
     CDS             9987..11309
                     /locus_tag="PXE26_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL5593656.1"
                     /translation="MSAMFIIQFAIVLLCILVGARVGGIGLGVFGGLGLAILSFGFGL
                     KPAGLPIDVMFMIMAVVSAAAAMQAAGGLDYMIKIATRILRKNPKYITFIAPLVTWTF
                     TVLAGTGHVAYSVLPVIAEVSRHNGIRPERPLSMAVIASQFAIVASPIAAAVVAVVAF
                     LEPQGVTLGNVLSVTIPATLLGLGLACVFVNKMGKELKDDPNYQRLLQDPEYVKENHI
                     TTNPTELPLKPTAKLSVGLFLFGALLVVLMGAIPALRPVFDGKPMGMAHTIEIVMLSI
                     GALIIFFCKPDGNEITKGSVFHAGMRAVIAIFGIAWLGDTLMQGHMDEVKSMVSGLVE
                     TAPWAFAFALFVLSVLVNSQGATVATLFPVAIAIGIPAPVLIGVFVAVNGYFFIPNYG
                     PIIASIDFDTTGTTRIGKYIFNHSFMLPGLLSMIFSIGFGLLLSNILL"
     gene            complement(11357..11716)
                     /locus_tag="PXE26_001057"
     CDS             complement(11357..11716)
                     /locus_tag="PXE26_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CrcB family protein"
                     /protein_id="HDL5593657.1"
                     /translation="MISIGAVLGAMCRWQLAVWLNPILSQFAFGTLAANWLGCLLIGI
                     AMGFNLGESQRLLFISGFLGSFTTFSSFSLELTEKLLAEKWGQFVTVLSLHLIGGLLL
                     TLIGVMLARAVTSGRFC"
     gene            11929..12714
                     /locus_tag="PXE26_001058"
     CDS             11929..12714
                     /locus_tag="PXE26_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HDL5593658.1"
                     /translation="MSKSLRNACIGEFIGTGFILFFGAGCVAAAQVAGANFGLWEISI
                     VWGLGVSMAIYISAGISGAHLNPAVTIALAAFYGFEKHKILPYVIAQVAGAFCSVALI
                     YFMYSDLFTAAEAAQGITRGETVGFAGVFSTYPNPNITLVTAFIVEFVITVVLMSTIL
                     AIGDDKNGLPNKALAALLIGLLIAVIGGATGPLTGFAMNPARDFGPKLFAYLAGWGEI
                     ALTGGKEIPYFIIPIVAPICGALFGAWGYKNLIHNNLPANTQE"
     gene            12718..14229
                     /gene="glpK"
                     /locus_tag="PXE26_001059"
     CDS             12718..14229
                     /gene="glpK"
                     /locus_tag="PXE26_001059"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HDL5593659.1"
                     /translation="MEKQYIIALDQGTTSSRAVLLDKNANVVEVAQREFTQIYPQAGW
                     VEHNPMEIWSSQSSTLNEVVAKAGIKPDSIAAIGITNQRETTIVWEKETGKPVYNAIV
                     WQCRRTSDITDKLKADGHEEYIRKTTGLVVDPYFSGTKVKWILDNVEGAREKAERGEL
                     LFGTVDTWLVWKLTQGRVHVTDYTNASRTMLFNIHTKQWDDKMLELLNIPRSMLPEVK
                     NSSEVYGQTNIGGQGGVRIPVAGIAGDQQAALYGHLCVKEGQAKNTYGTGCFMLMHTG
                     NTAIQSENGLLTTIACNAKGEPEYALEGSVFIAGASIQWLRDELKIVHDSFDSEYFAT
                     KEDDSNGVYVVPAFTGLGAPYWDPYARGSIFGLTRGANRNHIVRATLESIAYQTRDVL
                     EAMQSDSKAKLQALRVDGGATANNFLMQFQADILDTKVERPKVKEVTALGAAYLAGIA
                     VGFWKDLEELKDKAEIERTFTPDGDQEKRAKRYKGWKKAVRRSLEWAKEDAEE"
     gene            14381..14923
                     /locus_tag="PXE26_001060"
     CDS             14381..14923
                     /locus_tag="PXE26_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDL5593660.1"
                     /translation="MSQFQIHTIESAPETAQEALKAVQQANGFIPNLIGVLANAPTAL
                     ETYRTVGGINSRNSLTAEEREVVQITAAVVNGCGFCVAGHTKIALKALKMPEEVVNAL
                     RATARIDDNKLDTLARFTLAVMLQKAKLTEAQLNEFFAAGYNQQNAIDVILGVSLATL
                     CNYVNNIAEIPINPELQPFA"
     gene            complement(15044..16102)
                     /locus_tag="PXE26_001061"
     CDS             complement(15044..16102)
                     /locus_tag="PXE26_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA/acyl-ACP dehydrogenase"
                     /protein_id="HDL5593661.1"
                     /translation="MSVLSSSFIQWLQQNAENLDQSNERADLLIPQIAALGLYKIGVP
                     ETLGGSGGTLVDAIKAVTELGNHSLAAAFVSWGHRTFIEHIIASKNPIPRQSYLADLL
                     NGNLTAGTGLSNAMKFLSGIEELNVNIREENGKRYLNGRLPWVTNLRSYRFVASFVAG
                     FQDERKPLVIAIPSTAKGLTRTKELEFIALQGTNTTSLVFENVELQDEWILADDAPEF
                     LAATRPAFLGLQFGLPFGLVERSLAEIEKSLPFRAILASEWQAQVDALNDIKTRLFNG
                     LNEEGYFVRNPKELFQARIDIVNVVAQTILLELQASGGRGYLKNDTSGFSRRWKEAAF
                     LPVVTPSAVQLRMVLANN"
     gene            complement(16257..17000)
                     /locus_tag="PXE26_001062"
     CDS             complement(16257..17000)
                     /locus_tag="PXE26_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5593662.1"
                     /translation="MKQKYIYGLAGLLLLLLGWQLGTALLSQRLPMASMLAPAKTWES
                     FTWLISSGEIFPHLWASLQRIAVGLLAALVIGVPLGLLLGFSKHLEMLCTPSFQLLRM
                     ISPLSWMPIIVMLLGVGDLPIYFLLAFATVWSLIISTTSGVKSIDPQWLQLGRVMSAT
                     RKELLCKIVVPAITGHVLTGLRVAVGIAWVVLVPCEMLGVNQGLGYFILDTRDRLAYS
                     ELMAVIIIIGLIGWALDSLIRLALAKGGR"
     gene            complement(17017..18015)
                     /locus_tag="PXE26_001063"
                     /pseudo
     CDS             complement(17017..18015)
                     /locus_tag="PXE26_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250818.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
BASE COUNT         5251 a         3964 c         3827 g         5132 t
ORIGIN      
        1 gctcataaat caactataaa gcaacctttt tacactttat ttttagtaaa aataggtata
       61 ttatctaaat cgttaagcga aaggagttat ctaatgagta cattggaaga tattaaaaaa
      121 acagcgaaag actggcatag ggccgacatc atcgctgctt tacataaagc gggttggtcg
      181 cttagacaac tctcattgaa gcatggctac agtcaatcca gcaccttgaa aaacgctgta
      241 gatcgtccgt ggttaaaggg tgagcgtatt attgccgaag caatcggtat atcacccgaa
      301 gaaatttggc ctgaacgtta tgctcaacga aaccataaaa aatttgccga cagatagctt
      361 aaagaggttt ttatgagtga aaacagtcta aaaacacact attcggcaaa agaattggct
      421 gagttaagtt tagcctgttt acctaaaaca aagcaaggag ttttgtatca ggcaaagaaa
      481 caaggatgga ctactcataa aaaggttgga gttgggggag aaattttaga atttgcactc
      541 tcaaacctcc ctcaagaaat ccaaaccgaa atccgctccc gctttatgtc ggcggtggtg
      601 gaagccaagc cgaaaaagtt accggcagtg cgtgcggagg tggatgtggg aaacctgacc
      661 accaaacagc gagaaattgc tgatgcacga atggcactgg tggcgtatgt gttggaactg
      721 gaaggctcaa tgagccggat taaagcgata acctaccttt gcaaccttgc caaacaaggc
      781 gaaatgccac cgcacttggt ggagctggtt gccgtagcaa atgctaaaaa gacggcaaaa
      841 cgcacaatag ttcccatttt tagcccgatt atgccggatt tcccgttgga tagtcgagat
      901 tgaccgcttg ttatccaatt aggctttttt cttgctgatg gtatctaccc aaactgcaag
      961 cagtagaatt ccacctttaa cgatatattg ccagaaggtt ggcacatcaa gcatactcat
     1021 accgttatcc agcaaagcaa taataaatgc tccaataact acgccataaa tgctaccgat
     1081 accgccggct aaactggctc caccaatcac gcaggcggca atcgcatcta attcggcatt
     1141 ttgcccggcg gaaggtgcgc cggctccaag acgtgagctt aaaatcaagc ctgcaatggc
     1201 aactaataag ccgtttaagg caaaaatcgc aagtttgact ttttcaactg aaatccccga
     1261 gaggcgagcg gcatcaatgt tgccaccaat cgcataaatg tgacgcccga aggcggtttt
     1321 tctggccaag aatgtgccgg caatggctag aatcaccaac accaataccg ggaatggcac
     1381 accacggtaa tcattgagta ggtagatcgc acctaatacg ataattgcaa ctagtccgta
     1441 tttcagcgtg tctttcgaca tagaaggcac agtaagattg agtttttgtc tggctttgcg
     1501 ttggtagcta ccccaaacaa taaagcaaaa tatcccgata gtacctaaaa tcatacccac
     1561 catatcaggc aaatagcctt gaccaatggt tgtcatttca ttgctaatcg gtgaaacggt
     1621 tgtcccgttg gttaagccga ccaatacacc acgaaacgcc agcataccgg caagagttac
     1681 aataaaggac ggcacttttt gataagcaac ccaccaaccg ctccaagcac ccagcatgac
     1741 gcctaaaatt aaagtaacta taatagttaa cgagagcggc cagccccacc atacattact
     1801 gatggcggca aatccaccga gtaagcccat tagcgagcca accgataaat caatttctgc
     1861 ggaaataatc acaaatacca taccgatggc aagaataccg gtaatggagg tttggcgtaa
     1921 caggttggag atatttctgg cacttaaata agcaccgtca gttgcaatag agaaaaagct
     1981 cataatcaca acaattgcaa tcagcataat ataaacttgt aaattaatcg attttaactt
     2041 attcataggt tactccttga gtgccgcttc cattactttt tcttgggtaa ggtcttggtt
     2101 aatcaaatct gctttaattt tgccttggtg cataaccaat acacgatcac taatgcctaa
     2161 aacttcaggt aattcggagg aaatgacgat aattgccata ccttctttag ctaattggtt
     2221 gatgagctta taaatttcat attttgctcc cacgtcgata ccacgggtcg gctcatctaa
     2281 aatcaggatt ttagggttaa gcaataggca ttttgccaaa attgcttttt gctgattacc
     2341 gccacttaac cgtccaattg ctaattcagg cgaggaagtt ttcactttca gttttgcaat
     2401 agattggttg ataatggttt cttccagcgg ttcatttatt acttttttgc caaaacaaaa
     2461 ttgcggtaat gaagagagag ttatgttttt acccaccccc ataattggaa tgatgccgtg
     2521 ttttttgcga tcttccggca ccatcacaat atggttttca atcgcttgtg cacaattttt
     2581 gattttaatc ggttgcttat gcagaaaaat atcaccttga tatttgcctt ggtaagagcc
     2641 aaaaatacat tgtgccatct cggttcgccc tgaaccgacc aaaccagcaa tacctaaaat
     2701 ttcaccttgg cgtagtacaa aattagcatt atcaacccgt ttgatatgtg tattggttgg
     2761 gtgccaagcg gttaaatttt caactcgaag gacttcttca ccaatattgt gtggctcgtg
     2821 tgggtagagc gaggtaatct cacgtccaac catcatcgta ataatatcgt cttcactcat
     2881 tccctctgca ctgcgagtac cgatatgttc gccgtctcga atgacacaga ttttgtcgga
     2941 aatggctttc acttcattca atttgtgtga aatataaaca caagcaatat tgtgagcttg
     3001 taaatcttta attaaactca gcagaatctc ggtttctttt tcggttaacg aggcggtagg
     3061 ctcgtctaaa atcaacaacc gtacctgttt attcaatgct ttggcaattt caaccaactg
     3121 ttgttgccct aaacctagct ctccaacttt ggtgtttggg tcaatatcca actgcacttg
     3181 ttcaagtaag gttttacaac gcagatacat ttcattgtca tctgtaatcc ctgatttggt
     3241 aatttcattc cctaaaaaca tattctccaa aatcgacata ttttttacta aggtcaattc
     3301 ttggtgaata atcgaaatgc ctttttcttc agtatctttg atatttctgg caatcaattt
     3361 ttcgccggaa aaatagattt ccccttcata atcaccggca ggataaattc cacataatac
     3421 tttcatcaga gttgatttgc ctgaaccatt ttcaccacat aaagaaagta tttcgccggt
     3481 ttcaagggaa attgaaatat tatttaatgc cacaacctca ccgaattttt tagtgatgtt
     3541 cttcatttct aataatttcg ccatacttag ttagcccctt attttcaaaa atggcgagga
     3601 agcctcgcca tctagaaaaa ttaaagtgat ttatttatat actgcatctt tggtatggaa
     3661 gccgtcttta attactgtgt catcaatatt ttctttagtt acaacaaccg gctctaataa
     3721 atatgccggt acttctttca taccgttatt taattgagca ttcatttcta ctttctcatc
     3781 tttacctaat gcaacagcaa tttcggcagc tttgtcggct aaattggtaa ttggtttata
     3841 cactgtcatc gtttgcgtac cggcaataat acgtttaatt gcggctaaat ctgcatcttg
     3901 tccggaaatt gcaaccttgc tggataaccc ttgggcactt aacgcttgaa ttgcaccgcc
     3961 tgcggttgca tcgtttgaag ctacaactgc atcaatatta tttttattag cagttagtgc
     4021 attttccata atctgtaatg ctttttcagc aagccaagaa tctacccatt gatcgcctac
     4081 cactttaatt tttccactgt caattaacgg ttgtagcacc ttcatttgac ctttacggaa
     4141 cagcttcgcg ttattatcta caggtgaacc acccattagg aaataattcc cctccggctt
     4201 ttgcccaata atgcttttag cctgcaattc acctactttt tcattatcaa atgaaacata
     4261 aaaatccaca tcggcattat tgattaagcg gtcgtaagca agtaccttaa caccttcttt
     4321 cttcgcctcg gcaatcacat tggataacac ttcgccgtta aacggaataa tcaccaatac
     4381 atcaatatct ttattcaaca tattctcaat ttgtgagatt tgtgcggttg catcgccatt
     4441 tgccgattga acgaagactt ttgctcctaa gctttccgct ttattcacaa aaatatctcg
     4501 gtctttttgc caacgctcta agcgtaaatc atcaattgac ataccgattt ttagatcttt
     4561 agcaacagaa gcattgctga gtaccattaa agtcgccgta gcaacggcta ataatttaga
     4621 cttaagtttc atagttcacc tcattggtta tgaaaatgtg agcatctttt tcgcccgtaa
     4681 gcagtctggg cttatttcaa atgaagttca attatcatat ttattaatat cattatgatt
     4741 tttcactttt gtgatctacg ccacattaac caataatcga aatccaaaaa cgaaatatcg
     4801 taattgaagg ttttgcataa ttttccgatg atgttaccga aagattattt ttccaattca
     4861 taggagcatt attatgtcta actatttcga caaaatctca aaagtacaat atgaaggggc
     4921 taattccacc aacccgtttg cattcaaaca ttacaacccg gatgaagtgg ttttaggcaa
     4981 aacgatggca gaacatctgc ggttagcggt ttgctattgg cacaccttct gctggacggg
     5041 taacgatatg tttggcgtgg gttcgcttga cagaagctgg caaaaaacgg gggatttact
     5101 gcaaggtgcg aagcaaaaag cggaaattgc ctttgaattt ttccaaaaat taggcattcc
     5161 ttactactgc ttccacgatg tggatgttgc accggaaggc aacaatttca aagaatatca
     5221 gcacaatttc aacactattg tggatatttt agagcaaaaa caagctgaaa caggcgtgaa
     5281 attattatgg ggtacggcga actgctttac caatcctcgc tatatgtcgg gtgcttcaac
     5341 caatccgaat ccggaagtct ttgcttgggc ggcagcacaa gtctttaccg caatgaacgc
     5401 aaccaaacgc ttaggcggcg aaaattatgt attatggggc ggacgtgaag gttatgaaac
     5461 cctactcaac actgacttaa aacgtgagcg tgaacaaatc ggtcgcttta tgcagttagt
     5521 ggtggaacat aaacacaaaa tcggttttaa cggcacttta ttaattgagc caaaaccaca
     5581 agaaccaacc aaacatcaat atgactacga tgttgccacc gtttacggtt tcttaaaaca
     5641 gtttggtcta gaaaaagaga tcaaagtcaa cattgaagca aaccacgcca ctcttgcagg
     5701 gcatactttc caacacgaaa ttgcgactgc caccgcatta gatatttttg gctcgattga
     5761 tgccaaccga ggtgatccgc aattaggttg ggataccgac caattcccaa acagcgtgga
     5821 agaaaacacc cttgtgatgt atgaaatctt aaaagcaggt ggtttcacaa cgggcggttt
     5881 caactttgat gcgaaaatcc gccgccaaag taccgatccg tatgatttat tccacgcaca
     5941 tatcggggca attgatgtgt tagccctttc gctaaaacgt gcggcaaaaa tgctggaaga
     6001 tcaagcatta cagaaagtag tagataaccg ctacgctggc tggaaccaag atttgggctt
     6061 acaaattcta aacggtaaag caagccttga agatttggca aaaatagtgg aaacccaagg
     6121 gttagatcca aaacctgttt ccggtcagca agaatatttg gaaaatttgg taaatagcta
     6181 tatttaccgt taatctacaa gcggttgttt tttatcaatt ttttgcaaag ttaagctcga
     6241 tctgatcccc ctctttgcta aagaggggtg atagatctcc aaaacttaaa attgcaaatg
     6301 ttccgaataa aatgaccgct tgtattcaat aacaaaggaa tatttatgta cattggaatc
     6361 gatctcggca catcgggtgt gaaagtcgtg ttactcgatg aaaatcaaca cattattgcc
     6421 atcacacaaa aatcacttcc tatttttcgt ccacacccat tgtggtctga acaaaatccg
     6481 caagattggt ggaatgccac caatgaagcg atgttagaac tttccgctac tcaagattta
     6541 caagcagtaa aagcgattgg tttaaccggg caaatgcacg gagcgacttt actagataac
     6601 gcagataatg tactttcccc tgcgatttta tggaatgacg gacgtagttt tatggaatgc
     6661 gaagagttag aacagcttgt gccaaatagc cgtgaaatta caggcaacct gatgatgccg
     6721 ggctttaccg ctccgaaatt gcgttgggtt gataaacacc agcccgatat tgccgaaaaa
     6781 gtcagcaaag tcttgctacc gaaagattat ctccgcttgt tgatgagcgg cgaatatgcc
     6841 tctgatatgt ctgatgcctc cggcacaatg tggcttgatg tgggtaaacg gaattggaac
     6901 aaatcgctac taaatgcttg cggattagac attgaaaata tgccgaaact gtttgaaggc
     6961 aatcaaatca caggttattt acgtccaacc cttgccgagc aatggaaaat gaaatctgtg
     7021 ccgattgtgg caggcggtgg cgataatgct gccggtgcaa tcggcattgg cttataccaa
     7081 accgggcaag ctatgctctc attggggact tcaggggttt attttgtagt gagcgataaa
     7141 tttcaggcta atccgcaaaa agcagtgcat agtttttgcc acgctttacc tgatcgttgg
     7201 catctgatgt cagtaatatt aagtgccgct tctgcggtag attgggcagt aaaatcattg
     7261 ggactaaaag atgtatcgac tttattccaa caggttgaag caagccaaac ggcatctgat
     7321 gctattttct taccttattt atcgggtgaa cgtacaccgc ataatgaccc ttatgcgaaa
     7381 ggcgtatttt ggggattaag ccataatgac aaccaaataa cgatggcaaa agccgtgatt
     7441 gaaggggtaa gtttcgcttt ggctgaaggg attgaggtac tccacgaaac tggtgtagtt
     7501 gctgacaata ttgcattaat tggcggtgga gcaaaaagtg tgtactggcg acaactactt
     7561 gccgatatta gcggtaaaac ctttgaatac cgcaccagtg gtgatgtcgg tccggcatta
     7621 ggggcggcaa aactcgctca aattgcgcta aacccaaatc aggatattgc tacgttctgt
     7681 cagccgttac ccctggaaca ggtttaccaa ccaacccctg cccgctatgc agaatatcaa
     7741 caaaaacgcc aaaaatttac tgagctttac cggcggttaa aggggttata attcttgcca
     7801 actattacaa gcggttgatt ttgcagattt ttttgtaaaa tcaaccgctt gtatcacact
     7861 ttagaaaaca aattaatcac caatacaccg gcaataatga ggctgatgcc gattaagcct
     7921 gccaagtcaa ttttctgtcc gaaagcaaaa taagcaacaa gggcggtaag gacaatccct
     7981 acgccggacc aaatagcata cacgattccg accggtaggg tgcggaaaat aatagagaga
     8041 aagtaaaagg ataaaccgta taaggcgagc gagccaatag tcggtatagc tttggtgaag
     8101 ccgttgctta atttgagtaa attggtggca gcgatttcga ggcagatgga aatcgcaagt
     8161 aaaatccaaa cgttcattga tgacctcttt gcgtaaatgc gtgctatttt acctgagttg
     8221 caaaaaaatt taaaaaaatc accgcttgtt ttttcctgat taagctatgg tacaatcttt
     8281 ggtgaatcag gaggtgtgaa atggcacagg tttatatcgt acacggttat acggcgaatg
     8341 ccgataagca ttggtttcct tggctggagc aagaattagc gaagtgtggt gtcagttgtg
     8401 agcggttgaa tatgccggat tcggcaaagc cgtcattaga tggttggtta aatcatcttg
     8461 cacaaaatgt ggagctgacc gatcaaacgg tttttgtcgg gcatagttta ggttgcattg
     8521 ccattttgaa ttttttagcc aaaaattacg ccaagattaa aggggcggtg tttgtgtcgg
     8581 ggttctatca accggtagaa aacttacccg aactgtctgc ctttaccaac tattatgcga
     8641 ttttgccgag cgtatcgagc tttccaagct atgtggtaag tgcgttagat gataaggtcg
     8701 tgaatcacca atacagtgat gcgttagccc aacatttgca cgcggattat attcggttaa
     8761 atcaaggcgg gcattttttg gatagagaag gtgttaccga attacctgtg gtgttggagt
     8821 tggtgaagaa gttactcgag tgaaacctgt tttggtacaa gcgaggacgc ttgcaccatc
     8881 tataagttga atttaaacaa aagttataca tcagtctgat agtgccagcg tccacgctgg
     8941 tacttttgta taaaccaacc ctattttgca aaaaaacggt aaaaataaac cgcttgcctc
     9001 cctatgggaa aacttacagt ttaataaatc catcataaat gtgggtggca tcgccggtca
     9061 tatacagagg atgccctact ccttgccatt caataatcag cgttccaccg ggtaaatcca
     9121 cctgcacttt gttatctaac aagccttgca taatgccgac cgccactgtg ccgcacgcac
     9181 cgctaccaca ggcttgggtt tcgcctgctc cacgctcata cacccgtaat ttaacgtgat
     9241 tgcgattcac tacttgcata aagctgatat tcgcccgttc aggaaaacgc tcgtggcttt
     9301 ctagtaacgg cccgagttca tttaccgggg cggttttcac atcatcaact tgcagtacgc
     9361 agtgcggatt ccccattgaa accacgccac ataacacggt ttgtagctcg gtgcgtaaaa
     9421 tatagttttt ctcaaattta tttgctgtaa aaggcacttg cgaaggttcc caaatcggtt
     9481 cgcccatatt cacacgcact ttgccgtctt cttgcaaact tagcaccatt ttgccttttg
     9541 cggtgctaac gtgaatgtct tttttgttgg ttaagccttt gagcgtaaca aaacgggcaa
     9601 aacatctcgc cccattgcca cattgcgaca cttcactgcc gtctgcatta aaaatgcgat
     9661 agtgaaaatc taattcaggg tcgtaaggcg gttcaaccaa taaaagttgg tcgaaaccga
     9721 taccacgatg gcgatcagaa agcgtacgga tcatctcttc ggtaaggtaa acgttttggg
     9781 ttacaccatc aaccaccata aaatcattgc ctaagccgtg catttttgaa aattgcatat
     9841 tattccttaa ttaattagaa attttattga tttagattat agagattagt tttatttatt
     9901 gatatagtac gtgccgatta atttgatgaa aaatgcagat tttttcaaac acagagtttc
     9961 atttacttat ttaggagcaa aaaattatgt ctgcgatgtt tattatccaa tttgccatag
    10021 tgttactatg cattttggtt ggcgcccgtg taggcggtat cggattaggg gtgttcggtg
    10081 gcttgggctt agccattctt tcatttgggt ttgggctaaa acctgccggt ttaccgattg
    10141 atgtaatgtt tatgattatg gcggttgtgt cggctgcagc agccatgcaa gcagccggtg
    10201 gtttggacta tatgatcaaa attgccactc gcattttgcg taaaaacccg aaatacatta
    10261 cctttatcgc accgcttgta acttggacat tcaccgtgct tgccggtaca ggtcacgttg
    10321 cttattctgt attacctgta attgcagagg taagccgcca caacggtatc cgccctgagc
    10381 gtccactttc aatggcagta atcgcctcac aatttgcgat tgtcgccagc ccgattgctg
    10441 cggcagtagt tgctgtggtt gccttccttg aacctcaagg tgttacattg ggtaacgtgt
    10501 taagtgtgac tattcctgcg accttattgg gcttaggttt agcttgtgtg tttgtaaata
    10561 aaatgggcaa agaattaaaa gacgacccaa attatcaacg cttattgcaa gaccctgaat
    10621 atgtgaaaga aaatcacatt actaccaatc caaccgaatt accgttaaaa ccgactgcga
    10681 aattatcagt aggcttattc ctattcggtg cattattagt ggtattaatg ggcgcaattc
    10741 cagctcttcg ccctgtgttt gatggtaagc cgatggggat ggctcacacg attgaaattg
    10801 tgatgttaag tattggtgcg ttgattatct tcttctgcaa accggacggt aatgaaatca
    10861 ccaaaggttc tgtcttccac gccggtatgc gtgcagtgat tgcgattttc ggtattgctt
    10921 ggttaggcga taccttaatg caaggtcata tggacgaagt gaaatcaatg gtttcaggct
    10981 tagttgaaac cgcaccttgg gcatttgctt tcgcattatt cgtactttcc gtattggtaa
    11041 acagccaagg ggcaacggtt gcaaccttat tccctgtagc gattgctatc ggcattcctg
    11101 caccggtgct aatcggggta tttgtggcgg taaacggcta cttcttcatt ccgaactacg
    11161 gcccgattat tgcctcgatt gacttcgaca ccaccggcac aacccgtatc ggtaaatata
    11221 ttttcaacca tagctttatg ttaccgggct tacttagtat gattttcagt atcggatttg
    11281 gtttattact ttccaatatc ctactttaat cgctcgcaaa acctcccgtt tgggaggttt
    11341 tttatttgca aaattttcag caaaaacgac cgcttgtaac ggctcttgca agcattacac
    11401 ctatcaaagt aagcaaaagc ccaccgatta aatgtaaact cagcactgtc acaaactgcc
    11461 cccatttttc tgctaatagt ttttccgtta gttctaaaga gaaactggaa aaggtggtaa
    11521 aactgcctaa aaaaccgctg atgaacagca accgctggct ctcgcctaaa ttaaacccca
    11581 ttgcaatacc aattaacaaa caaccaagcc aatttgctgc taaagtacca aaggcgaatt
    11641 ggctgagtat cgggtttagc caaacggcta attgccagcg gcacatagct ccaagtaccg
    11701 ccccgattga aatcataagt attgaagaca tcatttttcc tcatctaacg ttttctcaca
    11761 tcatacctaa aaatgagtga tttagaaaaa taatgtgatg gatttcacaa atttgaaact
    11821 tcctatttgc ttaaaaaatg ccgctttggc aatatcactc cgaaatatgt tcatattcaa
    11881 acattttttc atcactttcc aatcattttc atcttaagga gaaactttat gagcaaatcc
    11941 ttacgtaatg cctgtattgg cgaatttatc ggtacaggtt ttattctttt ctttggtgct
    12001 ggttgtgttg ctgctgctca ggtagccggt gcgaatttcg gtttatggga aatttccatc
    12061 gtttgggggc ttggtgtttc catggcaatc tacatttctg ccggtatttc cggtgctcac
    12121 cttaaccctg cggtcactat agcacttgcc gcattctacg gctttgaaaa gcataaaatt
    12181 ttgccctatg tcatcgccca agttgccgga gcgttttgct ctgtcgcact gatttatttt
    12241 atgtatagcg atctctttac tgccgccgaa gccgctcaag gcattactcg gggcgaaact
    12301 gttggctttg ccggtgtgtt ctccacctat ccaaacccta atattacatt ggttaccgcc
    12361 ttcatcgttg aatttgtgat tactgtggtg ttgatgtcca ctattttagc gattggcgat
    12421 gataaaaacg gcttgccgaa taaagcctta gccgcattac tcatcggttt attgattgcg
    12481 gtaattggtg gagcaaccgg cccgttaacc ggctttgcga tgaacccggc tcgtgatttt
    12541 ggtccgaaac tctttgctta tcttgccggt tggggtgaaa ttgctttaac aggcggaaaa
    12601 gaaattccgt atttcatcat tccgattgtc gccccaatct gcggtgcatt attcggtgct
    12661 tggggttata aaaacctcat tcataacaat cttccagcaa atactcagga gtaatctatg
    12721 gaaaaacaat atatcatcgc tctcgaccaa ggtacaacca gctctcgtgc ggttttatta
    12781 gataaaaatg ccaatgtggt tgaagtggct cagcgtgaat ttacccagat ttatccgcaa
    12841 gcaggctggg tagaacataa cccgatggaa atttggtcaa gccaaagttc caccttaaat
    12901 gaagtggtgg caaaagccgg tattaagccg gatagcattg ccgcaatcgg gatcacaaac
    12961 caacgtgaaa ccacgattgt gtgggaaaaa gagaccggta aacctgttta taatgcgatt
    13021 gtgtggcaat gtcgtcgcac atcggatatt accgataaat taaaagcaga cggacacgag
    13081 gaatatattc gtaaaacgac aggcttggta gtcgatccgt acttctccgg cactaaagtg
    13141 aagtggattt tagataacgt agaaggggca agagaaaaag cagaacgtgg cgaattgctg
    13201 ttcggtacgg tcgatacttg gctggtgtgg aaattaaccc aagggcgggt acacgttacc
    13261 gattacacca acgcttctcg tactatgttg tttaacattc acaccaaaca atgggacgat
    13321 aaaatgctgg aattgctcaa tattccacgc tcaatgttac ctgaagtgaa aaattcatca
    13381 gaagtttacg ggcaaactaa tatcggcggt caaggcggtg tgcgtattcc ggtcgcgggt
    13441 attgcaggtg accaacaagc cgctctctac ggtcatttat gcgtgaaaga aggacaagcg
    13501 aagaatacct atggtacagg ctgttttatg ttgatgcaca ccggtaacac tgcgattcaa
    13561 tctgaaaacg gtttattaac gaccattgcg tgtaacgcaa aaggcgagcc ggaatatgcg
    13621 ttggaaggtt cagtatttat tgccggtgcg tctattcaat ggctgcgtga tgagctgaaa
    13681 attgttcacg atagctttga cagcgaatat tttgccacta aagaagatga ctctaacggt
    13741 gtttatgttg tacctgcctt taccggctta ggtgctccat attgggatcc gtatgcacga
    13801 ggctcaattt tcggtttaac ccgtggggca aaccgtaacc acattgtgcg tgcgacccta
    13861 gagtctatcg cttaccaaac ccgagatgtg ttagaagcaa tgcagtctga ctccaaagcg
    13921 aaactacaag cgttacgtgt ggacggtggt gcaaccgcaa acaacttctt aatgcagttc
    13981 caagccgata ttttagacac caaagttgag cgtccgaaag tgaaagaagt cactgcttta
    14041 ggggcagctt atcttgcggg tattgctgtc ggcttctgga aagatttgga agaactgaaa
    14101 gacaaagcgg aaattgaacg caccttcaca ccggacggcg accaagaaaa acgggcgaaa
    14161 cgctataaag gttggaaaaa agccgttcgc cgctcattag aatgggcaaa agaagacgca
    14221 gaagagtaaa aacgcaacct gtgcataaac aaagggagta taggcaacta tactcccttt
    14281 aagatctttt agttatatta aatagtgatt ttgatttgtt ctaaattagc cttttcttta
    14341 tgatgagcca caccaataaa caacctgata aggaacattt atgtctcaat ttcaaattca
    14401 cactattgaa tccgctcctg aaacggcaca agaagcccta aaagcagtgc aacaagcaaa
    14461 cggttttatc ccaaatctga tcggcgtatt agccaacgca ccaacagcac tggaaactta
    14521 ccgcactgtg ggtggtatta atagtcgtaa cagcttaacc gctgaagaac gtgaagtggt
    14581 acaaatcacc gcagcagtgg tcaacggctg tggtttctgc gtggcaggtc atactaaaat
    14641 cgccttaaaa gcattaaaaa tgcctgaaga agtggtaaat gctttacgtg ccacggctcg
    14701 catagacgat aacaaattag acactctggc tcgcttcacc cttgcagtaa tgttacaaaa
    14761 agccaaatta accgaagccc aattaaacga attttttgcc gcaggttaca accaacaaaa
    14821 tgcgattgat gtgattttag gcgtgagctt ggcaacatta tgtaactacg ttaacaacat
    14881 tgccgaaatt ccaattaacc ctgaattgca gccttttgca taatagatag ccgtaaaatt
    14941 gaggaagcat aaaaaatgca tcctttttta tttttattgc aagcggttat atttagacta
    15001 ttttttgcaa aataaaagag gcaacaattt gtctcttatc cgcttaatta ttcgccagca
    15061 ccattctcag ctgtaccgca cttggcgtaa caacgggcag aaatgccgct tctttccaac
    15121 ggcggctgaa gcctgaagta tcatttttca gatagccacg tccgccactc gcttgcagtt
    15181 ctagcagaat agtttgggcg acgacattga caatgtcaat tctcgcttgg aaaagctctt
    15241 tcggattacg cacaaaataa ccttcttcat ttaagccatt aaacagacga gttttaatat
    15301 cgttgagggc atcaacttga gcttgccact cagaggcgag aattgcacgg aaagggagcg
    15361 atttttcgat ttccgccaaa ctacgttcaa ccaagccaaa gggcaaacca aattgtaaac
    15421 ctaagaacgc agggcgagtg gctgctaaaa actcaggcgc gtcatcagcc aaaatccatt
    15481 catcttgtaa ttccacattc tcaaatacga gagaggtagt attcgtgcct tgcaatgcga
    15541 taaattccaa ttctttggtg cgggttaagc ctttggcggt ggagggaatt gcaatcacta
    15601 gcggtttgcg ttcgtcttga aaaccggcaa cgaaactagc aacaaagcgg tatgaacgta
    15661 aattggttac ccaaggcagg cggccattta aatagcgttt accgttttct tcacgaatat
    15721 tcacattcaa ctcttcaatg ccggagagaa atttcatcgc attggataaa cctgttcctg
    15781 cggttaaatt gccatttagc agatccgcca aatagctttg gcggggaata ggattttttg
    15841 aggcgataat atgctcgata aaggtacgat gtccccacga aacaaatgcc gcagccagcg
    15901 agtgattacc cagttcggta acggctttga tcgcatcaac caaagtgcca ccgctgccgc
    15961 caagcgtttc cggcacgccg attttatata gccctagtgc ggcaatttgt ggaatgagta
    16021 aatccgctcg ttcgttagat tgatctaaat tttcggcgtt ctgctgaagc cattgaataa
    16081 aagaagatga aagaaccgac attgtgttta cctcgtataa ttagtttact ttgtcgctat
    16141 cttaaatcgc ttttttatgc cctagaaata aaataaatta aggtaatatg ctttttggga
    16201 ataaacaagc ggtcgatttt ttgcaaaaaa atgcaatttt tcgaccgctt gtcaatttat
    16261 ctgccgcctt tcgctaaagc caagcggatt aagctatcca acgcccagcc gattaagccg
    16321 ataattataa ttaccgccat cagttcggaa taggctaatc ggtctcgggt gtctaaaata
    16381 aaatagccga gtccttgatt cacgcctagc atttcgcacg gtaccagcac cacccacgca
    16441 atcccaaccg ccacacgtaa accggtgaga acgtgtccgg taatagccgg tacaacaatt
    16501 ttgcacagca gttctttgcg ggtagccgac attactctac ccagttgtaa ccattgtgga
    16561 tcaatgcttt ttacccctga ggtggtggaa ataatcaacg accaaacggt ggcaaacgcc
    16621 agtaaaaaat aaatcggcaa atcgcctaca ccaagtaaca tcacgataat cggcatccac
    16681 gaaagtggcg aaatcatacg tagtagttgg aatgacggcg tgcaaagcat ttcaaggtgc
    16741 ttggagaagc cgagcaataa gcccagcggt acaccaatca ctaacgcagc gagtagcccg
    16801 acagcaatgc gttgcaaact cgcccataag tgcggaaaaa tttcgccgga ggaaatcagc
    16861 caagtaaaac tttcccaggt ttttgccgga gctaacattg acgccatcgg caaccgttgg
    16921 cttaacaagg ctgtgccaag ctgccaacct aaaagtagca gtaataaacc ggctaagccg
    16981 taaatatatt tctgtttcat cgttcgttcc tatcgcttat acactaattt gctcggttct
    17041 tgtccaaccg gtttgtaaat taaaggtttc aacccaaccg ccttgctcaa tcgcttttcg
    17101 cacaaaggtc ggctcgttaa tcgctttcgc tgcctctacc gggtcaagct gttgtaaaaa
    17161 cgcattattg ccggcaatgt gggtctgttt gagcattttg accagctctt ccatatagga
    17221 atcgaacgga tacggttgga aaccgattcg ctgttggtgc cactgagggt tttgaattgc
    17281 ccctgtttcg atatatttat cccactgagc ttgggttgga gccagtacct tttccagcac
    17341 tttttgatcg tgcggcgtgt agccgctgcc ccgagccaat aattgagcgg tttctgcacg
    17401 gttggcaagc gtggacactt gggcttcggt taagacattc accacttttt gcacccattc
    17461 cgggcggtgt tgaatatcgt attcgtgcat tagggttaaa cagcaggcgt gatctttcca
    17521 cacatcgcca ctaaaacgca gcaccttccc cacacctttg gcttccgcta acgcattgaa
    17581 cggctctgcc acaataaagc cggaaattgc ctcacttgcc aacgctgcca ccatatctga
    17641 cggagccatt acacttaatc gcacttcacc gcttttcggc tctttttcgg tgattttcaa
    17701 gccattttct cgtaataatc gttgcaaaac gatattatga attgaatacc aaaacggaat
    17761 tgctaccgtt ttgccggaga gttcggcaat actgttgatt tcagggcgaa ccgttaaagc
    17821 cgaacctgcc aagtgattcc acattaccgc tttcaccgga gcatttgctc catatttcgc
    17881 ccacaaactc ataggcgaaa gcagatgcac cacgttcaca ttgccactta aaaaggcttc
    17941 caccaactga gcccagctgc gaaacatcac cggtttttcc acctgcacac cgtgcttttc
    18001 aaataagcct ttgctgattt ttgcggtagc caagagaaag attcgtaatg cttaggctca
    18061 taaatcccct tttctagttc aatgttaatg aaatgaaaat agaggattcg tcttataaaa
    18121 gaaaagaatt agtaattttt agttagaaca atttgttata aaagtgtaaa aaat
//
LOCUS       DANLZD010000043        18106 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.043, whole genome shotgun sequence.
ACCESSION   DANLZD010000043 DANLZD010000000
VERSION     DANLZD010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18106)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18106)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18106
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.043"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            139..1230
                     /gene="ulaG"
                     /locus_tag="PXE26_001064"
     CDS             139..1230
                     /gene="ulaG"
                     /locus_tag="PXE26_001064"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001863918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HDL5593663.1"
                     /translation="MSKIQEITRESWILSTFPEWGTWLNEEIEEEVVPEGNFAMWWLG
                     CVGVWIKTPAGANICMDLWCGRGKSTKKVKDMVRGHQMANMAGVRKLQPNLRAQPMVL
                     DPFAINEVDFILASHYHSDHIDVNVAAAICNNPKLDHVKFVGPWHCAELWKKWGVPEE
                     RIIVVKPGDVVKLKDVEIHALDSFDRTCLVTLPVEGAEERGGELAGLCPSDEEMGRKA
                     VNYVFKTPGGTIYHGADSHYSIQFAKHGKQFDIDVALNNYGENPVGIADKMTSVDLLR
                     MAECLRCKVIIPVHHDIWTNFMASTQEIIDLWRMRKDRLQYQFHPFIWEVGGKYVYPR
                     DKDLIEYHHPRGFDDCFEQEPNIQFKSML"
     gene            1314..2060
                     /gene="ulaR"
                     /locus_tag="PXE26_001065"
     CDS             1314..2060
                     /gene="ulaR"
                     /locus_tag="PXE26_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator UlaR"
                     /protein_id="HDL5593664.1"
                     /translation="MNESYRHKELLALLEERKALSTADIMQLLNISPATARRDISKLD
                     GQGKLKKVRNGAEAILAPTFLQHTKITNNAQEKRRIAEAAGRLCKDGESLILTCGSTM
                     EMLGEVLCGRKLQIITNYLPLANQLIAGCHDDVVIMGGQYNKHKKVMLSINTQNEMTY
                     AATTMFTSGKGLTSEGLFKTDMIIANAEQQMAKHAERYVVLLDSTKLGKKVGMLFKEF
                     DKIDLLITGKEADPTIIQALRNKGLDIILA"
     gene            2115..2975
                     /locus_tag="PXE26_001066"
     CDS             2115..2975
                     /locus_tag="PXE26_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase"
                     /protein_id="HDL5593665.1"
                     /translation="MRKHKLGIYEKALPKNISWQDRLSIAKVCGFDFVEMSIDETDER
                     LARLDWSKKERAKLVKTIINTGVTIPSMCLSGHRRFPFGSCDEATRQKAYEIMEKAIQ
                     LAVDLGIRTIQLAGYDVYYEEQDEGTIQRFQQGLEWAVELAASNQVTIAVEIMDTQFM
                     SSISRWKKWDEIIKSPWFTVYPDLGNLSAWNDNVAEELKLGIDKISAIHLKDTYKVTE
                     TCKGQFRDVPFGDGCVDFAACFKTLAELNYRGAFLIEMWTEKAEEPITEIINARRWIE
                     QKMQEGGFTL"
     gene            2972..3691
                     /locus_tag="PXE26_001067"
     CDS             2972..3691
                     /locus_tag="PXE26_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HDL5593666.1"
                     /translation="MTQLTELTPALQALRERVLKANLELPKYGLVTFTWGNVSEIDRE
                     TGLVAIKPSGVEYDAMTVEDIVLVDLQGNRVYGDKKPSSDTETHLELYRQFTDIGGVV
                     HTHSRNAVGWAQAGRDLLALGTTQGDYFYGAIPCTRKMTAEEIAGSYELETGKVIVET
                     FRTRGIEPKAVPGVLVHSHGPFTWGKDGHDAVHNSVVLEEVAYMNFISHQIRPQIGPM
                     QQELLDKHYLRKHGANAYYGQ"
     gene            3939..6389
                     /locus_tag="PXE26_001068"
     CDS             3939..6389
                     /locus_tag="PXE26_001068"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012311.1,HMM:TIGR02601.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDL5593667.1"
                     /translation="MKNRNYFVAIATILALSPEVNATELSDQLASRTRYYPSATDSYY
                     SYYKYAPIYSGYYTSNSRNGYSSWYYPGSNAGVTTRTVSTTVNGITVTKVYTTHNGRT
                     TVRTTYAPAVNKPIVNKPTPIANKPVVDTPTQPVIDANPIMDPPVQPIVDNKPITDTQ
                     PNPITDNKPVIESPIDDTRPVIIRPTTPVNLHPEPVAVGVPNVGIRWNDRSRGYNIDD
                     PNNKQNVKLTGEGVKVGILDSGFKNYLMQDDILKKFGNRAVIIETGRTAPASATHGIE
                     VAEMVGGGNSRNGVASKSTLLLADITKTTNAGTGLSATAPIYYDLWNRGARIFNQSYG
                     IPKPLTYFNNNRNSSYYYLHQFDGNVLQFYKDKVKEGGLFVWAAGNNRGDLDPSLQAG
                     LPHYEADLEKGWISVVAVATRTNQGLGNFEWSNLLPYSQAGVAKNWTVTAMGDYIFNL
                     GGRNIIASGSSFAAPAVTGTAALVKQKYPWMDGNLIKQSILSTATDIGAPGVDDVYGW
                     GLLNIEKATNGPARFGKRLALADNVTVNIPNGSYEFSNNINGDAGLVKNGQGELILSG
                     ASTFEGDTTLNEGAVTINGKKYVSKVNVSPSGTLVVNNTTLENGVNNEGTVVNQGYST
                     IKRAYVASAQSTLVSDLGSNLNVKGEVDLNGSTLSLAAVKEGKAQYVTQKGLSMSAIT
                     SDSAIKGNFAAIETSGLLTATAEKTNENEVKATVSRKNVATALESSFSALDNQIEGNN
                     GSTNATNDEFAQQAATLQNSIANINTQSVVLDSLSGQIYASAQALTFENSETVNKDLS
                     NRLVMLGTLDNVGETAGV"
     gene            6399..7214
                     /locus_tag="PXE26_001069"
     CDS             6399..7214
                     /locus_tag="PXE26_001069"
                     /inference="COORDINATES: protein motif:HMM:TIGR01414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5593668.1"
                     /translation="MYGNGTLKEIGFGEGKTNTYAGQIGFDKPVTDHVILGAALNYSK
                     AKVNFDRYGGSSKADGIGASLYARIGNKHKTPWYLQGRAGYGSVDSDVERHIILADNN
                     ASTAKINHRDRVFSAYVESGYDFKQGRFALTPFVGFSHDVVRRGAFSEQNSQFGLTAD
                     KATYKQTSGLIGLRTSLEVNLAGMKTTFQGYVNHQKAFNREDLSFKASYTGLQDAKFD
                     VKGIGLAKHKTWVGIGALAEVNKNTSLYVNYDLKLAKNSGHNNVVTAGIRINF"
     gene            complement(7301..8161)
                     /gene="pdxY"
                     /locus_tag="PXE26_001070"
     CDS             complement(7301..8161)
                     /gene="pdxY"
                     /locus_tag="PXE26_001070"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal kinase PdxY"
                     /protein_id="HDL5593669.1"
                     /translation="MKNILSIQSHVVYGYAGNKASTFPMQLLGVDVWALNTVQFSNHT
                     QYGKWGGMVMPKEQIGSIVDGIHNIGELHRCDAVLSGYIGSAEQVAEIIQAFHKVKAE
                     NPNAIYVCDPVMGHPDKGCIVADGVKEGLINLAMAQADIITPNLVELRELTGLTVENF
                     EQAVEAVKVILTKGPKKVLVKHLSRVGKESNKFEMLFANQDGIWHISRPLYQFAKEPV
                     GVGDLTAGLFVANLLNGKSDLEAFEHTANAVNEVMEQTARSGLYELQIIASRDRIVNP
                     QCSYQAVKIA"
     gene            8280..8355
                     /locus_tag="PXE26_001071"
     tRNA            8280..8355
                     /locus_tag="PXE26_001071"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8313..8315,aa:Thr,seq:tgt)
     gene            complement(8450..9403)
                     /gene="accA"
                     /locus_tag="PXE26_001072"
     CDS             complement(8450..9403)
                     /gene="accA"
                     /locus_tag="PXE26_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HDL5593670.1"
                     /translation="MSQEFLDFELPIAELEAKIESLRAVSEQDDKINLDDEIKRLQKK
                     SEELTKKTFANLDAWQISRMARHPNRPYTLDYIEHIFTEFDELAGDRAFADDKAIVGG
                     IARLDGRPVMVIGHQKGRTVKEKVKRNFGMPAPEGYRKALRLMEMAERFNMPIITFID
                     TPGAYPGIGAEERGQSEAIARNLREMSQLSVPVICTVIGEGGSGGALAIGVGDKVNML
                     QYSTYSVISPEGCASILWKSADKASTAAEVMGLTAPRLKELELIDNIVPEPLGGAHRN
                     VEQIAQNLKQRIVEDLAGLDQLNKEDLLERRYQRLMNYGYV"
     gene            complement(9457..10881)
                     /locus_tag="PXE26_001073"
     CDS             complement(9457..10881)
                     /locus_tag="PXE26_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HDL5593671.1"
                     /translation="MKKQITRRQFLQGSALAAGFATVPTPLLAAERPQLNIPPLMDIG
                     RGKPVRLDLRPAQTQFDKGKLVDVWGVNGQYLAPTVRVKSGDFVKLTYLNNLPQKISM
                     NIQGLQASSEMIGTVHRSLDPKSSWSPIVSINQPACTCWYHADTMLNSAFQVYRGLAG
                     LWMIEDEQSKKATLPNKYGVNDIPLILQDQLLNKDGVQVLDKNTSQFFGKRLFVNGQE
                     SPYFNVPRGWVRLRIVNASLSRAYELRLDNEQPLYLIATGLGMLAEPLETESVQLAPS
                     ERVEVLVDLSEGKAVSLISGQKRDIFYKIGQVFADNDELNDNVILELRPEGMAAVLNN
                     KPSLPAFNLEEFNLKISQERRFAIRPADYLINQKRFDPKRIDFTAQKGSVERWYLHST
                     QAVGFTLQGAKFIIETLNRKQYPIKQLAWRDTVWLEAEQEITLLVRFDNTAPEQLPFT
                     FGVSDFMLRDRGTMGQFSVIENGQ"
     gene            complement(10883..11617)
                     /locus_tag="PXE26_001074"
     CDS             complement(10883..11617)
                     /locus_tag="PXE26_001074"
                     /EC_number="2.3.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acylglycerol-3-phosphate O-acyltransferase"
                     /protein_id="HDL5593672.1"
                     /translation="MLKIFRILIVALAAIFISIFGTIYALLRLRHPSSVGVVARWFGA
                     LHKLVGLELITRKKPEINYPVVYIGNHQNNYDMVTISSMVAEKTVSIGKKSLIWIPFF
                     GLVYWATGNIFIHREKRSSAIETMNKAGQIVKERNVSVWMFPEGTRSRGRGLLPFKTG
                     AFHLAISAGVPIVPVVCSNLHNKVDLNRSNNGTVICEMLDPIDTSGYSRENVKELMEK
                     CHQIMLAKFEQLNQEVEQLENTAKNA"
     gene            11764..12261
                     /gene="tpx"
                     /locus_tag="PXE26_001075"
     CDS             11764..12261
                     /gene="tpx"
                     /locus_tag="PXE26_001075"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005578656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HDL5593673.1"
                     /translation="MSKVTLAGSPIDVAGTFPQKGDVVADFTLVNSDLSDVSLSDFDG
                     KRKVLNIFPSIDTGICATSVRVFNQKAADVANTVVLCISADLPFAQARFCGAEGIENA
                     KVLSSFRHRDLHNKLGVDIISGPLAGLTSRSVIVLDENNKVLHSELVPEIKQEPDYEA
                     ALAVL"
     gene            complement(12346..13971)
                     /gene="yidC"
                     /locus_tag="PXE26_001076"
     CDS             complement(12346..13971)
                     /gene="yidC"
                     /locus_tag="PXE26_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HDL5593674.1"
                     /translation="MNNRGLLLMGLFLVSILIFTQWQQDFDPEIQAQKQAQVAAQTQQ
                     AGDLPSASNANNPIADSITQGKTITVESDVLRLTIDTLGGDVIGSDLLKHNAELHSNT
                     PFKLLQQDGDKIYVAQSGLVGKNGIDTNAGRPQYAVTADSFKLAEGQNEISVPLTFEK
                     EGVVYTKTFTLKRGSYDVGVNFNIKNNTAQAIEVQPYGQLKHSIVESSGNLTMPTYTG
                     GAYSSSETNYKKYSFQDMEKANLSVDTKAGWIAVLQHYFVSAWVPNQDADNSLYSRTN
                     NGVATIGYRGPLTTIAPNSEANLNSKLWTGSKDQKEMGESANHLDLTVDYGWAWFIAK
                     PLFWLLTAIQKIVSNWGLAIIGVTIVVKTILYPLTKAQYTSMAKMRMLQPRITEMRER
                     FGDDRQRMSQEMMKLYREEKVNPMGGCLPILIQMPIFIALYWTFMEAVELRHAPFFGW
                     IQDLSAQDPYYILPLLMGGSMFLLQKMSPTPVADPVQQKVMTFMPVIFTVFFLWFPSG
                     LVLYWLTSNLITIAQQWLIYRNLEKKGLHSRKK"
     gene            complement(14124..14549)
                     /locus_tag="PXE26_001077"
     CDS             complement(14124..14549)
                     /locus_tag="PXE26_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog fold thioesterase"
                     /protein_id="HDL5593675.1"
                     /translation="MTIWKQTATCEQLNTLSQKSAVSHLGIEFTAIGEDWIEAQLQVD
                     ERTQQPFGVLHGGVSAALAETTANAGALMVCEPHQIAVGMELNISHLKSIPAGTKAIA
                     KATPLKLGREVQVWNIDIKDEQGNLCAVARLSTKTLDKR"
     gene            complement(14878..17970)
                     /locus_tag="PXE26_001078"
     CDS             complement(14878..17970)
                     /locus_tag="PXE26_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HDL5593676.1"
                     /translation="MIPRLSEVPQLDKATQSYLTELVNQHFSGEIASNYADRLSLATD
                     NSVYQQIPQAILFPKSVSDVVILTKLAQKPEYQHLTFTPRGGGTGTNGQSLNNNIIVD
                     LSRHMNQILELNVEERWVRVQAGVVKDQLNQFLKPHGLFFSPELSTSNRATLGGMINT
                     DASGQGSLQYGKTSDHILAIKSVLINGDILETQAVKSADFFAHIEGLNLSALGKTLHR
                     EIFNRCKTLRPKVLNELPQLNRFITGYDLKNVFNHGESEFNLTRILTGSEGSLAFICE
                     AKLNLLPIPKYRTLINIKYNSFDAALRSAPFMLEAKALSVETVDSKVLNLAKQDIVWH
                     SVSDLLTEDPANPILGINIVEYASSDQTQIETQVKALCQSLDQKMANNEAGIIGYQLT
                     SDVNSIEKIYAMRKKAVGLLGNAKGWAKPIAFVEDTAVPPENLADYIVEFRALLDRYN
                     LPYGMFGHVDAGVLHVRPALDLCDKAQVETFKQISDQVVELTAKYGGLIWGEHGKGMR
                     SYYGERFFGETLWQELRYIKTLFDPYNRLNPGKICTPLESETSLYPIDSQMRADFDRQ
                     IPIQVREEFKGAMNCNGNGLCFNFDVHSTMCPSMKVSGNRLYSPKGRATLVREWLRLL
                     TEQNVSPDDLIFKPRKQAVKLADFVAKIRNTLNKNKEYDFSHEVKAAMDTCLACKACA
                     SQCPIKIDVPTFRSQFNELYHSRYLRPLKDYVVSNLEFIAPLMAKQPRFFNFFSTSTF
                     AEKAANKTIGMTYLPALSVPNLQHQLVEVGYQGESLESLEQQATSGDFSAKNCKTLFI
                     VQDPFTSYYDAKVVADFIALIKKLGFKPIVLPFKPSGKAQHVKGFLHKFAKTAKNQAD
                     FLNRVAKLGLPMVAVDPALTLLYREEYKEILKEARGDFKVLLAHEWLREVIKNGELEN
                     CKKSANSDRLPWYLFAHCTESTALPSSMKEWQAIFTHFGETLLNENVGCCGMAGTFGH
                     ETKHVEMSKAIYQQSWQIKLKNKPLERCLATGYSCRSQVKRFEQQGIKHPIQALLDVI
                     "
BASE COUNT         5177 a         3647 c         3949 g         5333 t
ORIGIN      
        1 ataaattttt accagtaaat cataaaaaat tagacataga tcacattttt gaataaaaaa
       61 gatgtacaaa tttttgtgat tgtttatgat tggttttgat tgcattgttc ttattttagc
      121 gtaaatcagg agactattat gagcaaaatt caagaaatca ctcgtgaaag ctggatcctt
      181 tcaactttcc ctgaatgggg tacttggttg aatgaagaaa ttgaagaaga agttgtaccg
      241 gaaggcaatt ttgcaatgtg gtggctaggc tgtgtcggtg tgtggattaa aaccccagct
      301 ggtgcgaata tctgtatgga tttatggtgc ggtcgtggta aatccaccaa gaaagtaaaa
      361 gatatggtgc gtggtcatca aatggcaaat atggcagggg tgcgtaagct ccagcctaat
      421 ttgcgggctc aaccgatggt gttagatccg tttgcgatta acgaagtgga cttcattctc
      481 gcttctcact atcactcaga ccatattgat gtaaacgtgg cagcggctat ttgcaataac
      541 ccgaaattag accacgttaa atttgtcggc ccttggcact gtgcagaatt atggaaaaaa
      601 tggggcgtgc cggaagaacg tattattgtg gtaaaaccgg gcgatgtcgt gaaattaaaa
      661 gatgtagaaa ttcacgccct agattcattt gaccgtacct gtttagtgac cttaccggta
      721 gaaggtgcag aagaacgtgg cggagaactt gcaggcttat gcccatcaga tgaagaaatg
      781 ggacgcaaag cggtgaacta tgtgttcaaa accccgggcg gtacgattta tcacggtgca
      841 gattctcact actcaatcca attcgctaaa cacggtaagc aatttgatat tgacgtagcg
      901 ctgaataact atggcgaaaa cccggttggt attgcggata aaatgacttc agttgattta
      961 ttacgtatgg cggagtgttt acgctgtaaa gtgattattc cggttcacca tgatatttgg
     1021 acaaacttta tggcaagtac gcaagaaatt attgatttat ggcgtatgcg taaagatcgc
     1081 ttacaatacc aattccaccc atttatttgg gaagtgggcg gcaaatatgt ttacccacgt
     1141 gataaagact taattgaata tcatcaccct cgcggctttg atgactgctt cgagcaagag
     1201 ccaaatattc aatttaaatc catgctatag gtgagcagtc gccactctca ctggagagtg
     1261 gcgttttagc aagttcatta tggagcagta gtgattagta atgggataaa gtagtgaacg
     1321 aaagttatag acacaaagag ttattagccc tgttggaaga gcggaaagca ctgtcaacag
     1381 cagatattat gcagctgtta aatatttctc cggcaacagc aagacgtgat atcagtaaat
     1441 tagatggtca aggtaaatta aaaaaggtta gaaacggagc agaagcaatt ctggctccta
     1501 catttttaca gcacacaaaa ataactaaca atgcgcagga gaaacgtaga atagcggaag
     1561 ctgccggtcg tttatgtaaa gatggggaaa gtcttattct gacgtgtggt tccacaatgg
     1621 aaatgctcgg tgaagtatta tgtggtagaa aattgcaaat tattaccaat tatctaccgc
     1681 ttgcaaacca gttgattgca ggttgccacg atgatgtagt gattatgggt gggcaatata
     1741 ataaacataa aaaagtgatg ctctcaatta acacccaaaa tgagatgact tatgccgcta
     1801 ccacaatgtt taccagtggc aaaggcttaa ccagcgaagg attatttaaa accgatatga
     1861 ttattgccaa tgccgagcaa caaatggcaa agcacgcaga acgttatgtg gtgttattgg
     1921 atagcaccaa gctcggcaaa aaagtcggta tgctgtttaa agagttcgat aaaattgatt
     1981 tattgattac cggcaaagag gcggatccga ctattatcca agcattaaga aacaaaggcc
     2041 tggatattat cttggcttag cctgtagcgg tcaaatttaa tcaaaatttt acttatcatc
     2101 ttcaagggaa aactatgaga aaacataaac tgggtattta cgaaaaggcc ttgccgaaaa
     2161 acatttcgtg gcaagaccgc ctttctatcg ccaaagtctg cggttttgac tttgtggaaa
     2221 tgtcgattga cgaaacggac gaacgcttag cccgccttga ttggagcaaa aaagaacgtg
     2281 ccaagctggt gaaaaccatc atcaacaccg gcgtgaccat tccgtcaatg tgcttgtccg
     2341 gtcatcgccg tttcccgttt ggttcttgtg atgaagcgac ccgccaaaaa gcctatgaaa
     2401 ttatggaaaa agccattcaa ctggcggtcg atctcggtat tcgcaccatt cagcttgccg
     2461 gctatgacgt ctattacgaa gagcaggacg aaggcacaat ccaacgcttc caacaaggct
     2521 tagaatgggc ggtggagctg gcggcaagca accaagttac cattgcggtg gaaattatgg
     2581 acacccaatt tatgagttcg atttcccgct ggaaaaaatg ggacgagatc atcaaatcac
     2641 cgtggttcac cgtgtatcca gatttaggca acctctcagc gtggaacgac aacgtagcgg
     2701 aagagctgaa actcggcatc gacaaaatct ctgccattca cttaaaagac acttacaaag
     2761 tgactgaaac ctgcaaaggg cagttccgtg atgtgccatt tggtgacggt tgcgtagatt
     2821 tcgccgcttg ttttaaaacc cttgccgagc tgaattaccg tggcgcattc ttaattgaaa
     2881 tgtggacgga aaaagccgaa gagccgatta ctgaaatcat caacgcccgc cgttggatcg
     2941 aacaaaaaat gcaagaagga ggatttaccc tatgacgcaa ttaactgaat taacccctgc
     3001 attacaagcc ttaagagagc gtgtgttaaa agccaattta gaattaccga agtatggctt
     3061 ggtaactttc acttggggta acgtaagtga aatcgaccgt gagaccggtt tagtcgccat
     3121 caaaccttcc ggcgtagaat acgatgcgat gacggtggaa gacattgtat tggttgattt
     3181 acaaggtaat cgagtttacg gagataaaaa accgtcttct gatacagaaa cgcacttaga
     3241 actttatcgc caattcactg atattggcgg tgtggtacac actcactctc gcaatgctgt
     3301 aggttgggca caagcagggc gtgatttatt ggcacttggc accactcaag gcgattattt
     3361 ctacggtgcg attccttgta ctcgcaaaat gaccgcagag gaaattgccg gcagttatga
     3421 gctggaaacc ggaaaggtga ttgtcgaaac tttccgaact cgaggtattg aaccgaaagc
     3481 agttccaggt gtgttggtac attcacacgg tccatttacc tggggaaaag atggacacga
     3541 tgctgtgcat aattctgtgg tattagaaga ggtggcttac atgaatttta ttagccatca
     3601 aattcgccca caaattggcc caatgcaaca ggaattatta gataagcatt atctgcgtaa
     3661 gcatggtgca aatgcttatt atgggcaata gctaataacc taaaaattat tttccaaatt
     3721 atcaacagct ttcgaggggc tttctataat cggaatagct cctcagtctg tttgagttta
     3781 tggatagatc cacaaataat taccattttc cttttcttga ttttaatttt gatttttgtt
     3841 ctaatctctg cctcttgttt ttacaagtct attaaggatc cgtagtagat ttgaaataaa
     3901 caagagtatc tttgtattta ttagaaggaa accaaaaggt gaaaaataga aattattttg
     3961 ttgcaatagc aacaatatta gccttatcgc cagaggttaa cgcaactgaa ctttcagatc
     4021 agcttgcaag tagaacaaga tattatcctt ccgccacgga tagttattat agttactata
     4081 aatatgcacc gatttattcg ggctactata catcgaatag ccgtaatggt tattcgtcgt
     4141 ggtattatcc aggtagcaat gcaggtgtaa caaccagaac tgtttcgaca acagttaatg
     4201 gcattacagt tacaaaagtt tatacaacgc ataatgggag aacaaccgtt cgtaccactt
     4261 atgctcctgc tgtgaacaaa ccaattgtaa ataaaccgac accgattgcc aataaacccg
     4321 ttgtagatac gccaactcaa ccggttattg atgccaaccc aattatggat ccgccagtcc
     4381 aaccaatagt tgataataaa cccatcactg atacacagcc taatccaatt acagataaca
     4441 aacctgtcat tgaatcgcca attgatgaca cccgtccagt tatcattagg cctacaacac
     4501 cggtaaatct tcatcctgaa cctgtagctg ttggtgtacc caatgtaggt attcgatgga
     4561 atgaccgctc tcgtggttac aacattgatg atcctaataa caaacaaaat gttaagttaa
     4621 ctggtgaagg tgttaaagtc ggtatcttag atagtggttt taaaaactat ttaatgcagg
     4681 acgatatact caaaaaattt ggtaatcgcg ctgttattat tgaaacaggg cgtactgccc
     4741 cggcttctgc aacacatggt attgaggtcg cagaaatggt tgggggaggg aactctcgca
     4801 atggagtagc gtctaagtca acgttattac ttgcggatat taccaaaaca acaaatgcgg
     4861 gtacaggatt atccgcaaca gctccaattt attatgactt atggaatagg ggagcccgta
     4921 tttttaacca atcatacggt attccaaagc ctcttactta ttttaataac aatagaaatt
     4981 ctagctatta ctatttacac caatttgatg gtaatgtgtt gcaattctat aaggataaag
     5041 taaaagaggg gggcttattt gtctgggctg cggggaataa ccgtggtgat cttgatccat
     5101 cactccaagc tgggttacct cattatgaag ctgacttgga aaaaggttgg atttctgttg
     5161 ttgcggtagc aaccagaact aatcagggat tgggtaactt tgaatggagc aatttattgc
     5221 catattctca agccggtgtg gcaaaaaatt ggaccgttac cgcaatgggt gactacatct
     5281 ttaatttagg aggtagaaac attattgcta gtggttcatc ctttgcagct ccagccgtta
     5341 cgggtacagc agctctcgtg aaacaaaaat atccttggat ggatggtaac cttatcaaac
     5401 aatctattct ctcgacggca accgatatcg gcgctcctgg agttgatgat gtatatggat
     5461 ggggtttact taatattgaa aaagccacta atggccctgc gcgttttggt aaacgactcg
     5521 ctttagccga taacgtgact gtaaatattc caaatggaag ctatgagttt tccaataata
     5581 ttaacggtga tgcaggcttg gtgaaaaatg gccaaggcga attaatttta tcgggtgcta
     5641 gtacttttga aggggataca acactcaatg aaggtgctgt cactattaac ggtaaaaaat
     5701 atgtgtctaa agtaaacgta tctccaagtg gtacattggt tgtcaataat accacgttag
     5761 aaaatggcgt aaataacgag ggtacagttg tcaaccaggg ttattctacg attaagagag
     5821 cttacgttgc ttcagcacaa agtacgctag tgtcagattt aggttcaaac ttaaatgtaa
     5881 aaggagaagt tgacttaaac ggctctactt tatcactagc tgcggtaaaa gagggtaaag
     5941 ctcagtatgt gacccaaaaa ggtttatcaa tgagtgctat tacttctgat tccgcaatta
     6001 agggtaactt tgctgcaata gaaacctcag ggttattaac tgcgacggcg gaaaaaacca
     6061 atgagaatga agtaaaagca acagttagcc ggaaaaatgt cgcgactgct ttagagagct
     6121 cattttcggc attggataac caaattgaag gaaataatgg ttctacaaat gctacaaatg
     6181 atgaattcgc acaacaagcg gctactttac aaaacagtat tgcaaacatc aatacgcaaa
     6241 gtgtggtttt agatagctta tctggtcaaa tttatgcgtc tgcgcaagcg cttacttttg
     6301 aaaactcaga aacagtgaat aaagatctct ctaaccgtct tgtaatgtta ggaacgctgg
     6361 ataatgtagg tgagactgct ggtgtgtgag taacgggtat ttatgggaat ggtactctaa
     6421 aagaaatagg gtttggtgaa ggtaaaacca atacctatgc tggccaaata ggttttgata
     6481 agccagttac agaccatgtg attttaggtg cggcacttaa ttattctaaa gcaaaagtga
     6541 acttcgatcg ttatggcggt agttcaaaag cagatggaat aggtgcatca ttatatgccc
     6601 gtataggcaa taagcataaa acaccttggt atttacaagg tcgagccggt tatggcagtg
     6661 ttgattcaga tgtagagcgt catattattt tggcggataa taacgcaagt acagcaaaaa
     6721 tcaaccaccg agacagagta ttttctgctt atgttgaatc aggctatgac ttcaagcaag
     6781 gtcgctttgc gttaactcca tttgtcggtt ttagtcatga tgttgtcaga cgtggcgcat
     6841 tcagtgagca aaacagtcaa tttggtctca ccgcggacaa agcaacctat aaacaaacaa
     6901 gcggattgat tggtttacga acatctttag aggtgaattt agctgggatg aaaacgactt
     6961 tccaaggcta tgtaaatcat caaaaagcgt ttaatcgaga agatcttagc tttaaagcaa
     7021 gttatacagg tttacaagat gcaaaattcg acgtaaaagg tattgggctt gcaaaacata
     7081 aaacgtgggt agggattggt gcattggcgg aagtaaataa aaatacttcc ttatatgtga
     7141 attacgacct taaactcgca aaaaatagtg gtcacaacaa cgttgtgact gctgggatta
     7201 gaattaattt ctaactgaat ctttttaaac aaaacgggcg tttatacgcc cgttttttta
     7261 tagttataga gataataatg ttattttata cttcatttaa ttaggcaatc tttacagctt
     7321 ggtaactaca ctgtggatta acaatccgat cacgagaagc aataatttgt aactcataaa
     7381 gccctgatct agcggtttgt tccattacct cattgaccgc atttgcagtg tgttcaaagg
     7441 cttctagatc ggattttcca tttaataagt tcgccacaaa tagccctgcg gttaaatcgc
     7501 ctacaccgac aggttctttg gcaaattggt agagtgggcg gctgatgtgc caaatgccat
     7561 cttggttggc gaacagcatt tcaaatttgt tgctctcttt gccgactcgg cttaaatgtt
     7621 taaccaatac ttttttcggg cctttggtta aaatcacttt cactgcctcg accgcttgct
     7681 caaaattttc caccgttaaa ccggttaatt ctcttaattc cactaaattt ggtgtgataa
     7741 tgtcggcttg tgccattgcc agattgatca atccctcttt tacgccgtct gccacaatgc
     7801 agcctttgtc ggggtgtccc attaccgggt cgcatacata aattgcgttt ggattttccg
     7861 ctttcacttt atgaaaagcc tgaataattt cggctacttg ttctgccgag ccgatatagc
     7921 cagagagtac ggcatcgcaa cgatgcagtt caccgatatt gtgaatgcca tcaacaatgc
     7981 taccgatttg ttcttttggc atcaccatac cgccccattt tccatattgg gtatggttgg
     8041 aaaactgtac ggtatttaac gcccatacat caacacctaa cagctgcata ggaaaagttg
     8101 aagccttatt gccggcatag ccgtagacaa cgtgcgattg tatggatagt atgtttttca
     8161 ttcattcact cctttaaaat ttcaatatgt gttgtttttt agtcatttga agttgcaagg
     8221 acttgaagct catcaagaaa tctctataat cccgcctcgt tctcttatcc attcaatatg
     8281 ccgacttagc tcagtaggta gagcaactga cttgtaatca gtaggtcacc agttcgattc
     8341 cggtagtcgg caccatcacc tttattttct gatgagtccc ctttaatgta aaatggcaag
     8401 attttgcaaa ttttcacaaa aatcttaccg cttgtagggt gaaattgaat tagacgtaac
     8461 cgtaattcat taagcgttga taacggcgtt ccagtaaatc ctctttatta agttgatcta
     8521 accctgccaa atcttcaaca atacgctgtt taaggttttg ggcgatttgt tcaacattgc
     8581 gatgagcacc gcctaagggt tccggcacga tgttatcaat cagctcaagc tcttttaaac
     8641 gaggggcagt taaacccatt acttctgctg ccgttgaggc tttatcggca cttttccaca
     8701 gaatcgaggc acagccttca ggtgaaatta ccgagtaagt tgaatattgc aacatattga
     8761 ccttatcgcc cacaccgatc gctaatgcac cgcccgagcc accttcgcca attaccgtac
     8821 agattactgg cacggaaagt tgagacattt cacgcaggtt acgggcaatc gcttctgact
     8881 gaccacgctc ttccgcacca atgcccggat aagctcccgg tgtgtcgata aaggtgatga
     8941 ttggcatatt aaagcgttct gccatttcca ttaaacgtaa cgctttgcga tagccttcag
     9001 gagcaggcat accaaagtta cgtttcactt tctcttttac ggtacgacct ttctgatgac
     9061 cgataaccat caccggacgt ccgtccagac gggcaatacc accgacaatc gctttatcat
     9121 cggcaaaggc acggtcgcct gccagttcgt caaattcggt gaaaatatgc tcaatataat
     9181 ctaaagtgta cgggcgattg gggtggcgtg ccatacggga aatttgccac gcatctaaat
     9241 tagcaaaggt tttcttggtt aattcctcgc ttttcttttg taaacgcttg atttcatcat
     9301 caagattaat tttgtcatct tgctcgctga ctgctcttaa agactcgatc ttggcttcca
     9361 attcagcaat cggcaattca aaatctaaaa attcttggct cattctattt tcctttttat
     9421 gggcaaaatt atggggcatt atcgcttatc agtcggttat tgtccatttt caattacgct
     9481 aaattgaccc atcgtacctc tatcacgcag cataaaatcg ctcacgccaa aggtaaatgg
     9541 cagttgctca ggggcagtat tatcaaagcg aaccaacagc gtgatttctt gctccgcctc
     9601 gagccaaacg gtgtcccgcc acgcaagttg tttgataggg tattgcttgc ggtttagggt
     9661 ttcaataatg aattttgcac cttgtagcgt aaatccgacc gcttgtgtgc tatgtaaata
     9721 ccaacgctca acgctgcctt tttgcgcggt aaaatcaatg cgttttgggt caaaccgctt
     9781 ttggttgatt aaataatcag ccggacgaat ggcaaaacgt ctctcttggc tgattttcag
     9841 gttaaattcc tctaagttga aagccggtaa actcggttta ttattcaata ccgctgccat
     9901 tccttcaggg cgaagctcta aaatcacgtt atcattcaat tcgtcgttgt cagcaaagac
     9961 ctgcccgatt ttgtaaaaaa tatctctttt ttgaccgctt atcagcgata ccgctttccc
    10021 ttcgcttaaa tcgaccaaca cttccaccct ttcactcggt gcaagttgaa ccgattcggt
    10081 ttcaagtggc tctgccagca ttcctaagcc ggtggcgatt aggtacaacg gctgctcgtt
    10141 atctaagcgt aattcataag cacgggaaag tgaggcattg acgatccgca atctgaccca
    10201 gccacgaggc acgttaaaat aaggcgattc ctgcccgttg acaaataatc gcttaccgaa
    10261 aaattgtgag gtgtttttat ctaacacctg tacgccgtct ttgttgagca gctggtcttg
    10321 cagaattaac ggaatgtcgt tcacgccata tttattcggt aaagtggctt ttttgctctg
    10381 ttcatcttca atcatccaca agccggctaa gccacgatac acttggaatg ccgagttgag
    10441 cattgtatcg gcgtgatacc aacaagtaca agccggttga ttgatagaaa caatcggcga
    10501 ccagctactt ttggggtcaa gggaacgatg caccgtgcca atcatctcac ttgaggcttg
    10561 caatccttga atattcattg agattttttg cggtaaatta ttgagataag ttaatttgac
    10621 aaaatccccc gattttaccc gtacggttgg ggcaagatat tgcccgttca caccccatac
    10681 atcaaccaat ttgcctttat caaattgggt ttgtgcgggg cgtaaatcca accgaaccgg
    10741 ctttcctcgc ccaatatcca ttaaaggcgg aatgttcagt tgcggtcgct ctgctgctaa
    10801 tagcggtgtt ggcactgttg caaatccagc cgcaagggca gagccttgta aaaattggcg
    10861 tcgggtgatc tgttttttca tattaggcgt tttttgcagt gttttctaac tgttcgactt
    10921 cttgattaag ttgttcaaat tttgccaaca taatttgatg gcacttttcc atcagttctt
    10981 tgacgttttc acgggaatag cctgaagtat caatcggatc aagcatttca cagattactg
    11041 tgccgttatt tgaacggttc aaatccactt tattgtgtaa attagagcaa actaccggca
    11101 caatcggcac gccggcagaa atggctaaat ggaatgcacc ggttttaaat ggcagtaaac
    11161 cacgcccacg gctacgagta ccttccggga acatccacac cgacacattg cgttctttca
    11221 cgatttgccc tgctttattc attgtttcaa tcgcactgga acgcttttca cggtgaataa
    11281 aaatattgcc ggttgcccag taaaccaaac cgaaaaacgg aatccaaatc aggctttttt
    11341 tgccgatact caccgtcttt tctgccacca ttgaggaaat cgttaccata tcgtaattgt
    11401 tttgatgatt gccgatatag acaaccggat agttaatttc cggctttttg cgggtaatta
    11461 attccaaccc gactaattta tgcaaagcac caaaccaacg agctaccaca cccacgctac
    11521 ttgggtgacg taaacgcagt aacgcataaa tagtgccaaa aatagaaatg aaaatagcgg
    11581 caagggcaac aattaaaata cgaaaaattt ttaacataat ggaataacct taaaaataaa
    11641 ttgtctagga gtatagcaaa ataaggttat tttctaaagg ctatccacat taaattgata
    11701 gtttcctatt ttgcaaaaaa tcggtatatt taaaccgctt gtttatttga taaggagaaa
    11761 aaaatgagta aagtgacttt agcaggaagc ccgattgatg ttgcaggcac atttccacaa
    11821 aaaggcgatg tggttgccga ttttacctta gtcaacagtg atttaagtga tgtttcgctt
    11881 tccgattttg atggcaaacg caaagtgtta aatattttcc caagtattga caccggcatt
    11941 tgtgccactt ctgtgcgtgt gtttaatcaa aaagcggctg atgtagcgaa tacggttgtc
    12001 ctttgtattt cagcggattt accttttgcc caagcacgtt tctgtggagc agaaggaatt
    12061 gaaaatgcca aagtattatc cagtttccgt catcgtgatt tacacaacaa actgggggta
    12121 gatattattt caggtccgtt ggcaggctta acttcacgtt cagtaattgt gttagatgaa
    12181 aacaacaagg tattacacag cgaattagtg ccggaaatta aacaagagcc ggattatgag
    12241 gcggcgttag cggtattata atttgcagaa ttatgctgga aaataaccgc ttgtaaagca
    12301 acaaaaagcc cgttgattca attcaacggg ctttgttttt agtgattatt tcttacgaga
    12361 gtgtaagcct tttttctcaa ggttacggta aatcaaccat tgctgtgcaa tcgtgattaa
    12421 gtttgaggtt aaccagtaaa gcactaagcc tgatgggaac cataagaaga acacggtaaa
    12481 gataaccggc ataaaggtca ttactttttg ttgtaccggg tcagctaccg gtgttggcga
    12541 cattttttgt aacaagaaca tcgaaccacc cattaataaa ggcaaaatgt agtatgggtc
    12601 ttgtgccgat aagtcttgaa tccagccgaa gaaaggtgcg tggcgtaatt ctaccgcttc
    12661 cataaatgtc caatataaag caatgaaaat cggcatttgg attaaaattg gtaagcagcc
    12721 acccattggg ttcacttttt cttctctgta gagtttcatc atctcttggc tcatacgttg
    12781 gcggtcgtcg ccgaaacgtt cacgcatttc agtaatgcga ggttgtaaca tacgcatttt
    12841 tgccatcgag gtgtattgtg ctttggttaa tgggtaaaga atggttttca ctacaatagt
    12901 gacaccgata attgccaagc cccagttgct tacgattttt tgaattgcgg ttagtaacca
    12961 gaaaagcggt ttagcgataa accacgccca gccgtaatct acggttaagt ctaggtgatt
    13021 tgctgattcg cccatttctt tctgatcttt agaacctgtc caaagtttgc tatttaaatt
    13081 agcctctgaa tttggcgcaa tcgtagttaa agggccacgg taaccgatag ttgctacccc
    13141 attattggtg cgtgaataaa ggctgttatc cgcatcttgg tttggcaccc aagcagacac
    13201 gaaatagtgc tgtaataccg caatccaacc cgctttggtg tccacgctta agttggcttt
    13261 ttccatatct tggaaactgt attttttgta gttggtttct gaagaagaat aagccccgcc
    13321 ggtgtaagtc ggcatggtta aattgccgga actttcaact atagagtgtt ttaattgccc
    13381 gtaaggctga acttcaatcg cttgtgcagt attatttttg atattgaagt ttaccccaac
    13441 atcgtagcta ccacgtttta gcgtgaaagt tttggtgtaa accacaccct ctttttcaaa
    13501 ggttaatggt acagaaattt cattttgccc ttcggctaat ttgaagctat ctgccgttac
    13561 cgcatattgt gggcgaccgg cattggtatc aatcccgttt ttacccacta aaccgctttg
    13621 agcaacgtag attttgtcgc cgtcttgctg taatagttta aatggcgtgt tagagtgtaa
    13681 ttcagcattg tgttttaaca aatctgagcc gatgacatca ccgcctaagg tatcaatagt
    13741 cagacgtaat acatcgcttt ccacggtaat ggttttacct tgcgtgatgc tatctgcgat
    13801 tggattattg gcattggaag cagacggaag atcacccgct tgttgggttt gtgctgccac
    13861 ttgagcttgt ttttgtgctt gaatttcagg atcaaaatct tgttgccatt gtgtaaaaat
    13921 caaaatagac acaagaaata aacccattag cagtaagcca cgattattca tgttggaatt
    13981 ctcttgttag taatggataa aaagaaaggt attttataat aggttagctt gttttccaaa
    14041 cgccttttat gaacaagcgg tcggattttc caagtttttt gcaaaatttt cggagaattt
    14101 gaccgcttgt ggagaataag aaactagcgt ttatctaagg ttttggtgga aaggcgagca
    14161 actgcacaca ggttaccttg ttcgtcttta atgtcgatat tccaaacctg tacttcacgc
    14221 cctaatttca gcggtgtagc tttggcaatc gcttttgtgc ctgccggaat cgattttaaa
    14281 tggctgatgt ttagctccat tcccaccgca atttgatggg gttcacacac cattaacgcc
    14341 cctgcattgg cagtagtttc cgcgagtgct gccgatacac cgccgtgcaa tacgccaaac
    14401 ggctgttgag tgcgttcgtc cacctgaagc tgtgcttcaa tccaatcttc accgatagcg
    14461 gtaaattcaa tccctaagtg tgacaccgcc gatttttggc tgagtgtgtt taattgttca
    14521 caagttgctg tttgcttcca aatggtcatt attatttcct gtctaataaa aaagctgtct
    14581 atttagacag ctttcattat ctctttgagc gaaacatact acgccaatag tacattgttt
    14641 ggtcgcccat attaccttaa gccatatagc actaaggagg tgatttatgt gagaaaatca
    14701 gaagttttct ttctggttgc gttgctaata ttattagcaa cttccgctag cattaaagta
    14761 ctcaccatac ttgatgtgct agtttggtta ttcgctagat aacctaaaat cagacagagg
    14821 caggctggtt acctgcctcg ctttttattc taagtacttt taggttacat ttcaacctta
    14881 aatcacgtcc agcaacgctt gaattgggtg tttaatgcct tgttgttcaa aacgtttgac
    14941 ttgcgagcgg caggagtagc cggttgctag gcaacgctca agcggtttat tttttaattt
    15001 aatttgccat gattgctgat aaatcgcttt cgacatttca acgtgtttgg tttcgtgtcc
    15061 gaacgtgcct gccattccac agcaaccgac attttcattg agtaaggttt caccaaaatg
    15121 ggtgaaaata gcttgccact ctttcattga gcttggcaag gcggtggatt cggtgcagtg
    15181 agcaaataaa taccacggca agcggtcgga atttgccgat tttttgcaat tttccagctc
    15241 gccgttttta atcacttccc ttaaccattc gtgtgccaat aagactttga aatccccccg
    15301 agcttctttg aggatctctt tgtattcttc acgataaagc aaagttaagg caggatcgac
    15361 agccaccatc ggtagcccca atttcgccac acggtttaaa aaatcggctt ggtttttcgc
    15421 tgttttcgca aatttatgca aaaagccttt aacgtgttgt gctttaccgc ttggcttgaa
    15481 tggcaacaca atcggcttaa agcctaattt tttaatgaga gcgataaagt ctgccaccac
    15541 tttggcatcg taataagagg taaacggatc ttgcacaata aacaaggttt tgcaattttt
    15601 tgcagaaaaa tcaccgcttg tagcttgttg ttcaaggctt tctaagctct cgccttggta
    15661 gccgacttcc accaactgat gttgcagatt tggcactgac aatgccggca aataggtcat
    15721 tccaatggtt ttgtttgcag ctttttcggc aaaagttgag gtgctgaaaa agttaaaaaa
    15781 acgtggttgt ttcgccatta aaggggcgat aaattctaag tttgagacca cataatcttt
    15841 cagtggtcgc aaatagcggc tgtggtaaag ctcgttaaat tgcgatctga acgtcggtac
    15901 gtcaattttg attgggcatt ggctggcaca ggctttgcag gcaaggcagg tgtccatcgc
    15961 cgctttgact tcgtgtgaaa aatcatactc tttgttttta ttgagcgtgt tgcgaatttt
    16021 tgcaacaaaa tcagctaatt tgaccgcttg tttgcgaggt ttgaagatca aatcgtccgg
    16081 cgaaacgttt tgttcggtaa gtaatctgag ccattcacgc acaagagtag cccgcccttt
    16141 cggtgagtaa agacggttgc ccgagacttt cattgaaggg cacatcgtgc tgtgtacatc
    16201 aaagttaaaa catagcccgt tgccgttaca attcattgct cctttaaatt cttctcgcac
    16261 ttggattgga atttggcggt caaaatcggc tcgcatttgt gagtcaatcg ggtagagcga
    16321 ggtttcgctt tctaatggtg tacaaatttt acctgggttc aagcgattgt acgggtcaaa
    16381 taaggttttg atgtaacgga gttcttgcca caaagtttcg ccaaagaaac gttcgccgta
    16441 gtaagaacgc atacctttgc cgtgttcgcc ccaaatcaag ccaccgtatt tggcggtgag
    16501 ttcgactact tggtcggaaa tttgcttaaa ggtttccact tgggctttgt cgcataagtc
    16561 aagagcaggg cgaacgtgta gcacgccggc atcaacgtgg ccgaacattc cgtaaggcag
    16621 attatagcga tctaataaag ctcgaaattc cacgatgtaa tcggcaaggt tttccggtgg
    16681 cacagcggtg tcttctacaa aggcgatcgg ttttgcccag cctttggcat tgcctagcag
    16741 gcctacggct tttttccgca ttgcgtagat tttctcgata gaatttacat cactcgtgag
    16801 ttggtagccg ataatcccgg cttcattatt tgccattttt tgatcaaggc tttggcagag
    16861 tgctttcact tgggtttcaa tttgagtctg atcgcttgag gcatattcaa caatgttaat
    16921 ccctaaaatc gggttggctg ggtcttcggt taataaatct gacaccgaat gccagacgat
    16981 atcttgcttg gcaagattga gcactttgga atcaaccgtt tccaccgata aggcttttgc
    17041 ctctaacata aaaggagcgg agcgtaaggc ggcatcaaag gaattatatt taatattaat
    17101 taaggtgcga tatttgggaa tcggcagtaa attcagtttg gcttcgcaaa taaaggcaag
    17161 cgaaccttca gaaccggtta aaatacgggt aaggttaaat tcgctttcac catggttaaa
    17221 cacatttttt aaatcatagc cggtaataaa acggttaagc tgaggcagtt cgttcagcac
    17281 tttggggcgt aatgttttgc aacggttgaa aatttcacgg tgcaaggttt tgccgagagc
    17341 ggagagattt aacccttcaa tatgtgcaaa aaaatcggca gatttgaccg cttgtgtctc
    17401 taaaatatcg ccgttaataa gcacagattt gatggcaaga atatgatcag atgttttgcc
    17461 atattgcaaa gaaccttgcc cagaggcatc ggtgttgatc attccgccta aagtcgctcg
    17521 gttactggta gaaagttcgg gggaaaagaa aagtccatgt ggttttaaaa attgattgag
    17581 ctggtctttc accacgccag cctgcactcg aacccaacgc tcttccacat tcagttccaa
    17641 aatctgattc atatggcggg agagatcaac aataatatta ttgttaagag attgcccgtt
    17701 agtgcctgtg ccaccgcctc gtggagtaaa agttaaatgt tgatattctg gcttttgggc
    17761 aagtttggtt agaattacga catcagaaac ggatttcgga aacagaatag cttgcggaat
    17821 ttgctgatac acgctgttgt ctgttgccag tgaaagccta tctgcataat ttgatgcaat
    17881 ttccccacta aaatgctgat tgacgagttc agttaaatag gattgggtgg ctttatccag
    17941 ttgcggtact tcagagagtc taggtatcat aagctgtgtt tggtttttta taataaaagc
    18001 actaaatttt gcttatctta gcaatttttc taaaaattgg gaatggaata tcaatttgat
    18061 taaatagtgt tcgaaaaatg gttttttggt taaaatatag acaaat
//
LOCUS       DANLZD010000044        17950 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.044, whole genome shotgun sequence.
ACCESSION   DANLZD010000044 DANLZD010000000
VERSION     DANLZD010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17950
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.044"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            1..1220
                     /locus_tag="PXE26_001079"
                     /pseudo
     CDS             1..1220
                     /locus_tag="PXE26_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251922.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
     gene            1213..1617
                     /locus_tag="PXE26_001080"
     CDS             1213..1617
                     /locus_tag="PXE26_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005557532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehydratase"
                     /protein_id="HDL5593677.1"
                     /translation="MHKFTFPIEQIAPLVPHSGNMILLDRITAFGEDFLTAETNIRPD
                     NPLIKHGKLATYASIEIMAQAGEPVRLGYLLGTRKLHLHRQEIPIGSQLQIQIKMSIQ
                     DATGFGVFDCQLIDLADNQVLLEGALNVFSPK"
     gene            1717..3150
                     /locus_tag="PXE26_001081"
     CDS             1717..3150
                     /locus_tag="PXE26_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDL5593678.1"
                     /translation="MQEAYDIQHLCTRKEDKSFDRKSARKEPKEILRHLIGFANADGG
                     LLVIGIEDNGEITGFNYQKAHQPEEFIHALHNLQKMPIPVTYQQIEVVNSRGLADFVL
                     LFEVTASSGRVITSHDDRVFLRSKDQTLELNFEQRLQLEYEKGQRAFEEQPIARADFT
                     DLDMDLLEQYRQKLHTDRSIEEILKARDLINKEGQITNACILLFGNNPTRYFPNARLR
                     FLRYEGKAPLTGRTFNVVKEFMLEEPIPKLLESAKAVLKSQLREFQRLDENGQFTKID
                     EYPEFAWLEGIVNAIAHRSYSNQGDCIRISMFDDRLEIFSPGGLPRPVTLENMYYTRF
                     SRNPKIARVLYEFGWVKELNEGVNRMAEEMNAYQLNTPSYFEPNENAVRLILENNIEH
                     RTLRALERIEEIFTQDIMATLNKNEVTILQYLYENEMITVKIASEILDRSKELSRRIL
                     KSLEQKNILTWHGLSPKDPTQYYTLKK"
     gene            3164..3892
                     /gene="fabG"
                     /locus_tag="PXE26_001082"
     CDS             3164..3892
                     /gene="fabG"
                     /locus_tag="PXE26_001082"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDL5593679.1"
                     /translation="MNNTVLITGSSRGIGKAIALTLAQQGFDIVVHCRSRVEEAEAVA
                     QAVRNLGKNARVLQFDVADREKVRSILEADVEQHGAYYGVVLNAGLTRDNAFPALTDE
                     DWDSVLRTNLDGFYNVLHPIMMPMIRRRKAGRIVCITSVSGLIGNRGQVNYSASKAGI
                     IGAAKALAIELAKRKITVNCVAPGLIDTDILDENVPIEEILKMIPAGRMGDPDEVAHA
                     VAFLMDEKATYITRQVIAVNGGLC"
     gene            3955..5100
                     /locus_tag="PXE26_001083"
     CDS             3955..5100
                     /locus_tag="PXE26_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
                     /protein_id="HDL5593680.1"
                     /translation="MKRVVITGIGVVTAFGKEWAEIHGYQPPKHWNRKQLRSLGRVSQ
                     FVVEASERALAQAGLLDENGVIFDWLKDRRMGVACGSSTGSTNDIKDAAELLMTGKSD
                     GFNANTYVRMMPHTTAANIGIFFGLTGRIIPTSSACSSGSQGIGYAYEAIKYGMIPMM
                     LAGGGEEFCASKVYVFDSLYAASRRNDNPKGTPRPYDKDRDGLVIGEGAGMFVLEELE
                     HALARGANIIAEVVGYGANSDGSHVTRPQATTMQRCMELALKDAGIQPNQVGYVNGHG
                     TATEQGDIAETQATTAVFGKIPLSSQKSYLGHTLGACGALESWFSIEMMRDGWFAPTL
                     NLENVDERCGDLDYLQGDGREIHTDYVMNNNFAFGGVNTSLIFKRWK"
     gene            5114..6019
                     /locus_tag="PXE26_001084"
                     /pseudo
     CDS             5114..6019
                     /locus_tag="PXE26_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251927.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dialkylresorcinol condensing enzyme"
     gene            6042..7184
                     /locus_tag="PXE26_001085"
     CDS             6042..7184
                     /locus_tag="PXE26_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HDL5593681.1"
                     /translation="MLSNVYITNTSAFLPNAPVSNDAMEAVLGMVGETPSRVRKMILR
                     SNGIQHRYYAIDPITRQATHSSTELAVQAVKKLGNSATSATCLAVGTSYPDQIMPGQG
                     VMVHGLLDAEPMEVLTTAGVCVAGMAAMKHAYNAVRIGEHRAAIATASETASAIMRSE
                     HFRAEIDHKKLDDARPEIGFEKDFLRWMLSDGAGAVLLANQPNEKGLSLKIHWIDLVS
                     YANEMPVCMYAGAEFIDGNYTGWKAMSEAQRAECSAMAVKQDVKLLNENIVKYTVEKA
                     LERIIPKYKLNAEEIDYFLPHYSSGSFRDKLLEGLQRINFLIPQEKWFTNLTTKGNTG
                     SASIYIMLDEFIRTHDLKQGQKILCYVPESGRFSSCFMLLEAVVNS"
     gene            7233..7448
                     /locus_tag="PXE26_001086"
     CDS             7233..7448
                     /locus_tag="PXE26_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDL5593682.1"
                     /translation="MDINDIPQDNSKIFNGERKVIYARNPQPEIRQMISSILACYAWD
                     ENNPFVAKSDARLKALAEVVGKAEIGD"
     gene            7729..8220
                     /gene="rplJ"
                     /locus_tag="PXE26_001087"
     CDS             7729..8220
                     /gene="rplJ"
                     /locus_tag="PXE26_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HDL5593683.1"
                     /translation="MALNLQDKQAIVAEVNEAAKGALSAVVADSRGVTVEKMTELRKA
                     AREAGVTMQVVRNTLLRRAVEGTEFECLTDTFTGPTLIAFSNEHPGAAARLFTEFAKT
                     NKEFELKGAAFEGKKQDVAFLATLPTYEEAIARLMGTMKEAAAGKLVRTLAALRDQME
                     AAA"
     gene            8279..8647
                     /gene="rplL"
                     /locus_tag="PXE26_001088"
     CDS             8279..8647
                     /gene="rplL"
                     /locus_tag="PXE26_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HDL5593684.1"
                     /translation="MSLTNEQIIEAIASKSVSEIVELITAMEEKFGVSAAAAVAAAPA
                     AGAAAAEEKTEFDVVLAEAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISK
                     AEAEALKKELEEAGAKVEIK"
     gene            complement(8754..9584)
                     /locus_tag="PXE26_001089"
     CDS             complement(8754..9584)
                     /locus_tag="PXE26_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDL5593685.1"
                     /translation="MVQKPLNHYLEMQEHFLYVPYLHHHRRIRVLLPKDYHNEGWERY
                     PVLYMHDGQNVFYSKESYSGHSWKIIPTIKSHQELPKMIIVGIDNAGANRLNEYGPWK
                     TTTGSTPETRNAGGLGEEYAKWVVETVKPFIDIHYRTKPQQEHTLLAGSSMGGIITAY
                     MGSRYPHIFGHLGVFSLASWFSEPDFLRFTHQYPLQPNTKVFIQVGTNEGDEIDSHFI
                     SNTNQTYIDCSLNYYQALIRIGVPLDNIRLRIMANEIHHEMHWADHFVEFLHFSLLRK
                     "
     gene            9810..11351
                     /locus_tag="PXE26_001090"
     CDS             9810..11351
                     /locus_tag="PXE26_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjI family glycine radical enzyme"
                     /protein_id="HDL5593686.1"
                     /translation="MQASLQDILEVVKAKNLTYQQKLMSLGNIAERLFNPIELLGYTE
                     EEWEHIENQMICDLNEGYAIYRPRYILPDYNVYMQKGCQFLDLPPPTNLDEALDGLLI
                     LYSHVPSITTFPVYIGRLDQLLEPFITDEEQDYIKIKRFLNHIDKTISDSFCHANIGP
                     NDTKAGRLILKAVIELENITPNMTIRYDKTKTSREFAELAAKACLLVSKPSFANDAYY
                     IQDLGEEYGIASCYNALPECGGAYTLTRLRLGTIGRACASVEQMVNEMLPKVAKLALS
                     TMDKRHKFLVEESNFFESSFLVQEGFIKRTNFTSMIAIVGLADAVNHLLKQEGLNETF
                     GQSKRGDEIATLIMDKLQAVNDAHKGLYVERTNNQYLLHAQVGANNHAEDKMNTPAHR
                     IRVGEEPTLLAHLKQSAPFHKYFPSGTGDLFAFDQTYTDHLDAVVDIIDGSFAQGYRY
                     ITTYLKNTDLIRVTGYLVKKSEVERYRKGEAVLRDTTWYGSGTDDCAKVFDRQLRDEE
                     NVNAG"
     gene            11354..12142
                     /locus_tag="PXE26_001091"
     CDS             11354..12142
                     /locus_tag="PXE26_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S cluster-binding domain-containing
                     protein"
                     /protein_id="HDL5593687.1"
                     /translation="MAALSEIFVPLHRIIPFSNVEGQGNRTSIFLQGCKLNCLYCHNP
                     ETIPRYSKEAKQVSLQYLYDQVMEAVPFIRGVTISGGEPTIHHKKLVPLFEALREQGL
                     TCYLDSSGFFDFEATEPLINVTDKFLFDLKGDGAGLQTLCFDRKNQAGKVPEQALPNV
                     NHIKPENLARNLQNLAKLLPLDKVEEVRLVYLNEFYNAHHLLEKVADLLKPYPDVLLK
                     IIRVHTKGARDETGLARFVPTIEQTDELAAFAKRHGIQKVITIY"
     gene            12155..13412
                     /locus_tag="PXE26_001092"
                     /pseudo
     CDS             12155..13412
                     /locus_tag="PXE26_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005760733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
     gene            complement(13491..15500)
                     /locus_tag="PXE26_001093"
     CDS             complement(13491..15500)
                     /locus_tag="PXE26_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5593688.1"
                     /translation="MSAENMPSVIRFEQAVAKKDYESACTELLSILSKLDSNFGGISN
                     IELNMPEQIENLENDKAIYFCTRMAVAITRLFEDPALEISEHGAMRFLTLQRWIALIF
                     ASSPYVNADHILRTYNRNKESANPNTVDLDATLQALIKFCILYLPESNILLNLDAAWN
                     ASSDLTASLCFALQSPRFIGTSSAFAKRAAILQWFPEKLAQIENLNKLPSAISHDVYM
                     HCSYDIEANKHNVKRSLNAVIRRHLLSVGWEDRKIEQLGTRNNKPVMVVLLEHFHSSH
                     SIYRTHSTSMVAAREHFHLIGLGSDAVDEMGQQVFDEFHLLPQDGSLFDRLSFLKDIC
                     DKNNPAVFYMPSIGMDLTTIFASNTRLAPIQAVALGHPATTHSDFIEYVIVEDDYVGS
                     ESCFSEQLLRLPKDALPYVPSALAPQNVVYNLRENPEVIHIGIASTTMKLNPYFLEAL
                     KAIRDRAKVKTHFHFALGQSSGITHPYVERFIKSYLGNDATAHPHSPYDEYLNILHNC
                     DMMLNPFPFGNTNGIIDMVTLGLVGVCKTGPEVHEHIDEGLFKRLGLPNWLITQTAEE
                     YVTQAIRLAENHEERLAIRRDIIENNKLQTLFSGDPRPMGQIFLAKVQAWLADKNSKN
                     AEVEVKTKKVRKAATASQSAKKQTTSKTQTAKAEKDNTAKTETKS"
     gene            complement(15510..16847)
                     /gene="rimO"
                     /locus_tag="PXE26_001094"
     CDS             complement(15510..16847)
                     /gene="rimO"
                     /locus_tag="PXE26_001094"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HDL5593689.1"
                     /translation="MSASPNIGFISLGCPKNLVDSERILTELRADGYNIIPSYENADL
                     VIVNTCGFIDSAVQESLESIGEALEANGKVIVTGCLGAKENQIREVHPKVLEITGPHS
                     YEAVMNHVHKYVPKPEFNPYTSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMR
                     GDLASRSIVQVLDEAKRLVDAGVKELLIVSQDTSAYSLDRKKEEATKTVFWNGMPIKS
                     NLITLCEQLGSMGVWVRLHYVYPYPHVDDLIPLMAAGKILPYLDIPLQHASPKILKAM
                     KRPGSIERTLERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGC
                     FKFSPVEGAVATDMPDQVPEEVKEERFHRFMQLQQEISAARLQAKIGKTVQVIIDDID
                     EEGIIGRSMADAPEIDGVVYVDNPSNQLVTVGQIISVTITHADEYDLWGILNN"
     gene            complement(17002..17694)
                     /gene="mtnN"
                     /locus_tag="PXE26_001095"
     CDS             complement(17002..17694)
                     /gene="mtnN"
                     /locus_tag="PXE26_001095"
                     /EC_number="3.2.2.16"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/S-adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HDL5593690.1"
                     /translation="MKIGIIGAMAQEIEILRQVMVEPKVTELAGCKIFEGKINNTRVA
                     LLQSGIGKVAAAIGTTLLIQLTQPDMIINTGSAGGLDPDLNVGDILISTEVRYHDVDV
                     TAFGYEIGQLPANPPTFSPNEQLVELAQKEAKKAGYNVVSGLICSGDAFINGNDKINQ
                     IRQNFPNVVAVEMEAAAIAQVCHGFNLPFVIVRAVSDVADKESHLSFEEFLPLAAEKS
                     STIVLAMLNNID"
     gene            complement(17752..>17950)
                     /locus_tag="PXE26_001096"
     CDS             complement(17752..>17950)
                     /locus_tag="PXE26_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SlyX family protein"
                     /protein_id="HDL5593691.1"
                     /translation="AKITELETKVAFQELIIEELNQALIEQQFAIDKLQTQIRHIAEK
                     LKGAQLSQVASQAEETPPPHY"
BASE COUNT         5139 a         3743 c         4039 g         5029 t
ORIGIN      
        1 atgacactat atttatcaga gcccgccatc accagtccga ttggatatgg catcgtggag
       61 catttgaatg ttttaattaa tgcgaaagta tctcctttag atacgacttc acagccttat
      121 ttacgacata atatttcaaa tagttcaccg aaatttctag ggcaagtctc tgctagattg
      181 cgtgattttc ctgttgaact atctattgaa caccgcagcc gcaataacca actgctatgg
      241 cacgcccttg cagaaattga gccgaaaatt accgcttgta tcgagcaatt cgggcgtgag
      301 cggattgcgg tgatcatcgg cacgtccact accggcgccg atgaaaatat tcccgtcttc
      361 aaagccggtg tgcagggcga ttatgccacc gagcagttta atcaacagca aattctcttc
      421 tctgcgccgt ctgatttcgt tgccgaagtg tatggcttaa cggggctgag ttacggcatt
      481 tccaccgcct gcacctcaga ggcaagagcg ttaatttctg ctgcccgttt actgaaagcc
      541 ggcttgtgcg atgcggtgat ttgcggtggt gtggataccc tttcgccttt aactatcagc
      601 ggatttagct cgctggaagt gttatcaaac caacaaacca acccattttc cgctaaccgt
      661 aacggcatta acatcggcga aggcgcagcg gtgtttgtga tgagccgtga accactggac
      721 gaacatcgca ttcagttact gggttatggt tccagctcgg acgcttacca tatgtcctca
      781 cctcaccccg aaggggaagg ggcaatttcc gctttccaaa atgccctgca caatgctgat
      841 ttagacgcag ccgacatcgg ctggatcaac ctgcacggca cagggacgct tcataacgat
      901 caaatggaaa gcctcgctgt ggcaaaaatc ttcggtaatc agaccgcttg caccaccacc
      961 aaaccctaca ccgggcatac ccttgggctg ccggtgcggt ggaagcggca attttgtggg
     1021 gaatgctctg tcgccaacac aacccgaccg gcaagctccc tgcgcaatta tgggataaac
     1081 aagcggacga aaacctgccg aacattgcga tcaccgatga acagagccgt tgggcagcag
     1141 gcagacggat tggcgcaagc agctcttttg cctttggcgg caataacagc gtactgattt
     1201 tgggagaaag cgatgcataa attcaccttc cctatcgaac aaattgcacc attggttcct
     1261 cacagtggca atatgatcct actcgaccgc attaccgcat tcggcgagga ttttttgacc
     1321 gctgaaacca atattcgccc tgacaatccg ctgatcaaac acggaaaact tgccacctac
     1381 gccagcattg aaattatggc acaagccggc gaaccagttc gcttaggcta cctgctcggc
     1441 actcgcaaac tgcacctcca ccgccaagaa atcccgattg gctcacagct acaaattcag
     1501 atcaaaatgt ctattcaaga tgccaccggc ttcggcgtat tcgactgcca actgatcgat
     1561 ttagccgaca accaagtgct tttagaaggg gcgctgaatg tgtttagtcc gaaatagagt
     1621 tggtagtagt aagtagtagt aagtagtagt aagtagtagt aagtagtagt tggtagtagt
     1681 tggtagtagt tggtagtagt tggtaggaaa ttcgttatgc aagaggccta tgacattcaa
     1741 catctttgta ctcgcaaaga agataaatcc tttgatcgca aaagtgcgag aaaagaaccg
     1801 aaagagattt tgcggcattt gattggtttt gcgaatgcag acggcggttt attagttatt
     1861 ggtattgaag ataatggcga aattaccggt tttaactacc aaaaagccca tcagccggaa
     1921 gaatttatcc acgctctgca caatttacaa aaaatgccga taccggtgac ctatcagcaa
     1981 attgaggtgg taaatagtcg aggtttagcg gattttgtct tattatttga agttacagct
     2041 tcgagtggga gggtgattac ctctcacgat gatcgggttt ttctacgctc aaaagatcaa
     2101 actttggaac tcaattttga acaacgtttg caattagagt acgaaaaagg gcagcgtgct
     2161 tttgaagagc aaccgatagc acgcgctgat tttactgatc tggatatgga tttattagaa
     2221 cagtatcgac agaaattaca cacagatcgc tcaatagaag agattctgaa agcccgagat
     2281 ttaattaaca aagaagggca aattacgaat gcctgtattt tgctatttgg gaataacccg
     2341 acacgttatt ttcctaatgc ccgtttgcgt tttttgcggt atgaaggtaa agcacctctg
     2401 accggtagaa cttttaatgt cgtcaaagaa tttatgcttg aagagcctat tcctaagtta
     2461 ttggagagtg ctaaggcagt attaaaaagc caattacgag agttccaacg tttagatgaa
     2521 aacgggcaat tcacaaaaat tgatgagtat ccagaatttg cttggttaga aggtattgtc
     2581 aatgcgattg cacaccgtag ttacagtaat caaggggact gcattcgcat ttcgatgttt
     2641 gatgaccgtt tggaaatttt tagtccgggt ggattacctc gccctgtgac gcttgaaaat
     2701 atgtactata cccgtttttc acgcaatccg aagattgcac gagtgctgta tgaatttggt
     2761 tgggtcaaag agctgaatga aggtgttaat cgtatggcgg aggaaatgaa cgcttaccaa
     2821 cttaatacac cttcttactt tgaacccaat gaaaatgcgg tcagactgat tttagaaaat
     2881 aatattgaac atcggacatt aagggcatta gaacgaatag aagaaatttt tacgcaggat
     2941 attatggcga cattaaataa aaatgaagtt actatcctgc aatatttata tgaaaatgaa
     3001 atgattactg taaagattgc tagtgagata ttagatcgga gtaaagaatt atctcgtaga
     3061 atattaaaaa gtttagaaca aaaaaatatt ctcacttggc acggcttaag tccaaaagat
     3121 ccaacccaat actacacact caagaaatag taggaaatat aagatgaata atacagttct
     3181 catcaccggc tcaagccgtg gtatcggtaa agcgattgct ttaacccttg cacaacaagg
     3241 gtttgatatt gtggtacatt gccgttctcg tgtggaagaa gcggaagcgg tggcacaagc
     3301 ggtcagaaat ctcggaaaaa atgccagagt gttacagttt gatgtggcgg atcgtgaaaa
     3361 agtgcggtcg attttagagg cagatgtgga acaacatggt gcctattacg gcgtggtgct
     3421 aaatgcaggg cttacccgtg ataacgcctt tcctgcttta accgatgagg attgggatag
     3481 cgtgttgcgt accaatttag acggttttta taatgtcctg cacccgatta tgatgccgat
     3541 gatccgtcgc cgtaaagcag gcaggattgt ctgtatcacc tcggtttccg gcttgatcgg
     3601 caaccgtggg caggtcaatt acagcgcttc aaaagccggc attattggtg cggcaaaagc
     3661 actcgccatc gagcttgcca aacgtaaaat cacggtaaac tgcgtggcgc ccggcttgat
     3721 tgataccgat attctggacg aaaacgtccc aatcgaagaa attctcaaaa tgatccccgc
     3781 aggacgaatg ggcgatcctg atgaagtggc acacgccgtt gcgtttttaa tggatgaaaa
     3841 agccacttac atcacacgcc aagtcatcgc tgtgaatggt gggttgtgtt aactttagga
     3901 taataattcg taggggcgga tccagtaccc gcccgaagcc aaaaagagat aaatatgaaa
     3961 cgagtcgtca tcaccggaat tggtgtggtt accgcttttg gtaaagagtg ggcggaaatt
     4021 cacggctatc aaccgccgaa acattggaac cgcaagcagt tgcgcagcct tgggcgagtg
     4081 tcgcaatttg tggtggaggc cagcgagcgg gctttagcac aggccggttt gttggacgaa
     4141 aacggcgtga ttttcgactg gctaaaagac aggcgaatgg gcgtggcgtg tggctcgtcc
     4201 acaggctcta ccaatgacat caaagatgcc gccgaattgc tgatgaccgg caaatcggac
     4261 ggtttcaatg ccaacaccta tgtgcgaatg atgccccaca ccaccgctgc caatattggc
     4321 attttcttcg ggctgacagg gcggattatc ccgacttcca gcgcttgctc ctcgggcagc
     4381 caaggtatcg gttacgctta cgaagccatt aaatacggta tgatcccgat gatgcttgcc
     4441 ggcggtggag aagaattttg tgcctccaaa gtctatgtct tcgacagcct ctatgctgcc
     4501 agccgccgca acgacaaccc aaaaggcacg ccacgcccct atgacaaaga ccgagacggc
     4561 ttagtgatcg gcgagggagc gggaatgttc gtattggaag agctggaaca cgcgttagca
     4621 cgaggggcaa acattatcgc cgaagtggtg ggctacggtg caaacagtga cggttcccac
     4681 gtcacccgcc cacaagccac cacaatgcaa cgctgtatgg aacttgccct taaagatgcc
     4741 ggtattcaac cgaaccaagt cggctatgta aacggacacg gcacggccac cgagcagggc
     4801 gacattgccg aaactcaagc caccacagcg gtgttcggca aaattccgct cagctcgcaa
     4861 aaaagctact tagggcatac gctcggtgcg tgtggtgcat tggaaagctg gttcagcatt
     4921 gaaatgatgc gagacggctg gttcgcccca acactgaatt tagaaaatgt cgatgaacgc
     4981 tgtggcgact tggattacct tcaaggtgac ggacgggaaa tccacaccga ttatgtgatg
     5041 aacaacaatt tcgccttcgg cggtgtgaat acctcattga tttttaaacg ttggaaataa
     5101 ccgttttcaa ataatgaaaa agatattatt agtttattac tcccaaaccg ggcaactcac
     5161 ccatttggca gaaaattttg tacaatcgct tgaacaagcg ggcgtttttg tggaaaaact
     5221 cgcaatcaaa ccgcaacagg aatacccgtt tccgtggcgg tttatgcgtt tttttaacac
     5281 cttccccgaa accgtccacc tcacaccgcc gccgattgag cctctgccct ttcagcacga
     5341 aatatacgat ttggtgatca tcgcctattc cgtgtggttt ctctccccca gccagccgat
     5401 taccgctttt ttacagagtg aacaggcaaa aaagtgttga aggatacgcc cgtcatcacg
     5461 ctgatcggct gtcgcaatat gtggctgatg gcgcaggaaa aagtgaaaaa actgcttgcc
     5521 gagagtgagg cgaagctcat tggcaacgtg gtcaaagtgg atcaatctaa cgactgggcg
     5581 agttttatca ccacaccgct ttggatgctg accggcaaga aaaaaaatcg gcaagctgcc
     5641 gagcgctggc attgccgaaa gcgaaatgga agatgtaaaa cgcttcgggg caaaactttt
     5701 gcacattttt agccaaaacc aaccgcttga cagcaccctt ttccgccaaa tgcaagcggt
     5761 caaaattgac gaaaaattga tgatgagcga aaaagtcggt gcgagaagtt tccacctttg
     5821 gggcaaatta ctgatcaagt gcggtcaaat ttcaccgcac ttacgccaag cggtactcta
     5881 tttttacatc ctctttttag tgacgttaat tttaaccgtc gtcccgattt caacggtgat
     5941 taaacggcta ttacgcccac tgctgaaaga aaaattagaa aaacaaaaac ggtattttgc
     6001 cgagccttcg ggcgagtaaa cgtaccctac acggaaactt tatgctatct aacgtctata
     6061 tcaccaacac ctccgccttt ttacccaacg cccctgtgtc caacgatgca atggaagcgg
     6121 tgttgggaat ggtgggggaa acgccttccc gagtgcggaa gatgattttg cgttctaacg
     6181 gtattcaaca tcgttattat gccattgacc cgataacccg ccaagcgact cacagcagta
     6241 ccgagttggc ggtgcaagcg gtcaaaaaat tgggaaattc tgcaacatca gcgacttgct
     6301 tggcggtggg gacatcttac cccgaccaaa ttatgccggg gcagggggtg atggtacacg
     6361 gcttgcttga tgccgaaccg atggaagtgc tgaccactgc cggtgtgtgc gtggcgggaa
     6421 tggcagcgat gaagcacgcc tataatgccg tacgcatcgg tgagcatcgt gctgcgattg
     6481 caacggcttc cgaaaccgcc tccgccatta tgcgcagtga acatttccgt gccgaaatcg
     6541 atcataaaaa actggacgat gctcgccctg agatcggttt tgagaaagat ttcctgcgtt
     6601 ggatgctctc agacggtgca ggggcggtat tgcttgccaa tcagccgaac gaaaaagggt
     6661 tgagcctcaa aattcactgg atcgatctgg tctcttacgc taacgaaatg ccggtttgta
     6721 tgtacgccgg tgcggaattt attgacggca actacaccgg ctggaaagca atgagcgaag
     6781 cccaacgtgc cgaatgctcg gcaatggcgg tgaaacaaga tgtcaaactg ctcaacgaaa
     6841 acatcgtcaa atacacggtg gaaaaagcat tggagcggat tatcccgaaa tacaagctca
     6901 acgctgaaga gattgactac ttcctgccgc actactcgtc cggttccttc cgagataaat
     6961 tattggaagg tttacagcgg atcaatttcc tgatcccaca ggaaaaatgg ttcaccaacc
     7021 tgactaccaa aggcaacact gggtcagcct cgatctacat tatgctcgat gaatttatcc
     7081 gcacccacga tctcaaacag ggacaaaaaa tcctctgcta tgtgccggaa agcggacgtt
     7141 tttcgtcttg ttttatgctt ttggaagcgg tggtaaattc gtaaaatcgt agggacgggg
     7201 gctattcccg tccaacaatc atcggaaaac gtatggacat caatgacatt ccccaagaca
     7261 acagcaaaat cttcaacggc gaacgcaaag tgatctacgc ccgcaatccg caaccagaaa
     7321 tccgccaaat gatctcctct attctcgctt gctacgcttg ggacgaaaac aacccgtttg
     7381 tagcgaagtc tgatgcacgg ttgaaggcat tggcggaagt tgttggtaaa gcagaaattg
     7441 gcgattaagt ttgattttgt gctttacagg gtcgcagatt atctgtataa tttgcgacct
     7501 taacttgcga gagcaagctg atggtgctta gcctatctaa gccccgtcta agactgtagg
     7561 ggtgaaaact taataatcct acatagatgg tgaacagaca gaattctctg cttctggaca
     7621 ccttaggctc aaagaagatt gcagtttgta gcaatgcaag cggtaatatt tttgggattt
     7681 tttgtaaatt ctgcttgaaa aggcagagtg tatcaggagc taaaaccaat ggcattaaat
     7741 cttcaagaca aacaagcgat tgttgctgaa gtaaacgaag ctgccaaagg tgcactttca
     7801 gctgttgttg cggattctcg cggtgtaaca gttgaaaaaa tgactgagtt acgtaaagca
     7861 gctcgtgaag ctggtgtgac aatgcaagtt gtacgtaata ctttattacg tcgtgcagtg
     7921 gaaggcaccg agttcgagtg cttaacagat acgtttaccg gtccaactct tatcgcattc
     7981 tcaaatgaac acccaggtgc agcagcacgt ttattcactg aatttgcgaa aacaaacaaa
     8041 gagtttgaac ttaaaggtgc agcctttgaa ggtaaaaaac aagatgttgc attcttagca
     8101 accttaccaa cttacgaaga agcaattgca cgtttaatgg gcacaatgaa agaagctgcg
     8161 gcaggcaaac ttgttcgcac tcttgcagca ttacgcgatc aaatggaagc agcagcttaa
     8221 ttttaagcac tcttctttat tcgtttaaca acttatttta ctttaggaat cgattgttat
     8281 gtcattaact aacgaacaaa tcattgaagc gattgcttct aaatcagtat cagaaatcgt
     8341 tgaattaatc actgcgatgg aagaaaaatt cggtgtttca gcagcggcag cagtagcagc
     8401 agctccagca gcaggcgcag cggcagcaga agagaaaact gagtttgatg tagtattagc
     8461 agaagctggt gcaaacaaag ttgctgtaat caaagcagta cgtggtgcaa caggtttagg
     8521 cttaaaagaa gctaaagact tagtagaatc agctccagct gcattaaaag aaggcatctc
     8581 taaagcagaa gctgaagcac ttaagaaaga attagaagaa gctggcgcga aagtagaaat
     8641 caaataattt ttgatttatt ttgtcagaac ttcaagttca acaaaccccg atggaaacat
     8701 cggggttttg ttttttcaga attgtgtaat gtagatatga ttacctttat ccattacttg
     8761 cgcagcagtg aaaaatgtaa aaattccaca aagtgatctg cccagtgcat ttcgtggtgg
     8821 atttcatttg ccataatccg caggcggata ttgtctaacg gcacgccaat ccgaatcagt
     8881 gcttggtagt aattgagcga acaatcaata taggtttggt tcgtattaga gataaagtgc
     8941 gaatcgattt catcgccttc gttagtgcca acctgaataa acactttggt attgggttgt
     9001 aacggatatt ggtgcgtaaa acgcagaaaa tccggctcac taaaccaaga ggcaagcgaa
     9061 aacaccccta aatgcccgaa aatatgtggg tagcggctgc ccatataagc ggtgataatg
     9121 ccacccattg aactgcctgc caataaggta tgttcttgct gaggcttggt gcgatagtga
     9181 atatcaataa agggtttaac cgtttccacc acccatttgg catattcctc ccctaagcct
     9241 ccggcatttc gggtttcagg ggttgagccg gtggttgttt tccacgggcc gtattcattt
     9301 aagcgattag ctcctgcgtt atcaatgccg acaataatca tcttcggtaa ttcttggtgt
     9361 gatttaatgg ttggaataat tttccaagaa tgccccgaat aagactcttt gctgtaaaac
     9421 acattttgcc cgtcgtgcat atataacacc ggataacgtt cccaaccttc gttgtgataa
     9481 tccttcggca atagtacccg aatgcggcgg tgatggtgta aatagggaac atataaaaaa
     9541 tgctcctgca tttctaaata gtggttaagt ggtttttgta ccatcagtct gtccttttgc
     9601 ttaaattgtg gcgtatttta caccttaatc agtctgagtt aaaacaagcg gtcagaaaaa
     9661 gtcaaaaatt tgcaaattgc tgttacctaa cgcaatcggt tgccttatgc ttttgaggaa
     9721 tataaaagag aaactgtgat ctaagtcaca gcaattttta ttcggtttga ctaaaatccg
     9781 aactatcact taatagagag gaaaatgtta tgcaggcttc attacaagat attcttgagg
     9841 tagtaaaagc aaaaaatctc acttatcagc aaaaattgat gagtttaggc aatattgctg
     9901 agcggttatt taacccgatt gaactacttg gctacactga agaagagtgg gaacacattg
     9961 aaaatcagat gatttgcgat ttaaatgaag gttatgcgat ttatcgccca cgttatattt
    10021 tgcctgatta taatgtgtat atgcaaaaag gttgccaatt cttagattta cctccgccaa
    10081 ccaatttaga tgaagcctta gacggcttgt taattctgta ttcacacgtt ccgtccatta
    10141 ctacttttcc ggtgtatatc gggcgtttag accaactgtt agaaccgttt ataaccgatg
    10201 aagagcaaga ttacattaaa atcaagcgtt tcttaaatca tatcgataaa accatttccg
    10261 attctttctg ccacgctaac atcgggccga atgacaccaa agccggtcgt ttaatcttaa
    10321 aagcggtgat tgagcttgaa aacattacac cgaatatgac gattcgttat gataaaacca
    10381 aaacatcgcg tgaatttgcc gaactggcgg cgaaagcgtg cttgttggtg tccaaaccgt
    10441 cttttgctaa tgatgcctac tacattcaag atttaggcga agaatacgga attgcaagct
    10501 gttataacgc cttaccggaa tgtggcggtg cttacactct gacccgcctg cgtttaggta
    10561 ctatcgggcg tgcttgtgcg agtgttgaac aaatggtcaa tgagatgctg ccgaaagtgg
    10621 caaaactcgc cctttccacg atggataaac ggcataaatt cttggtggaa gaaagcaatt
    10681 tctttgaaag tagcttcttg gttcaggagg gctttatcaa acgtactaac ttcacaagta
    10741 tgattgcgat tgtaggtctt gctgatgcgg tgaatcattt actcaagcaa gaaggtttaa
    10801 atgaaacctt tgggcaaagc aaacgtggcg atgaaattgc gacgctgatt atggataagc
    10861 tccaagcagt aaatgacgct cataaagggc tgtatgttga acgaaccaat aaccaatatc
    10921 tgttacacgc tcaagtgggg gcaaataacc acgctgaaga caaaatgaac acgccggcac
    10981 accgcattcg tgtgggcgaa gagccaacct tattggcaca cttaaaacag tctgctcctt
    11041 tccataaata tttcccatcc ggtacggggg atttattcgc ctttgaccaa acctacactg
    11101 atcatttaga tgcggtggtg gatattattg acggctcgtt cgcccaaggt tatcgctaca
    11161 ttaccactta cctgaaaaat actgatttga ttcgagtgac aggctacttg gtgaaaaaaa
    11221 gcgaggttga acgttatcgc aaaggcgaag cggtattgcg tgataccact tggtatggtt
    11281 caggcaccga tgattgtgcg aaagtgttcg accgccagct gcgtgatgaa gaaaatgtga
    11341 atgcagggta acaatggctg cactttctga gatttttgtg ccgttacacc gcattatccc
    11401 cttctcgaat gtagaagggc agggcaatcg taccagcatt tttctacaag gttgcaagct
    11461 gaattgcctg tattgccata acccggaaac cattccacgt tatagcaagg aagcaaaaca
    11521 ggttagcttg caatacttgt acgatcaagt gatggaggca gttcccttta ttcgaggagt
    11581 cactatttcg ggtggagagc caaccattca tcataaaaaa ttagtgccac tgttcgaggc
    11641 gttgcgtgag caagggctaa cctgttattt agacagcagc ggcttttttg attttgaggc
    11701 aacagagccg ttaattaatg ttaccgataa atttctgttc gatctcaaag gagatggggc
    11761 gggcttacaa acgctatgct ttgatcggaa aaaccaagcc ggcaaagtgc ctgaacaggc
    11821 tcttccaaac gtgaatcata ttaaacctga aaacttggct cgcaatttgc aaaatttagc
    11881 caaattatta ccgcttgata aggtggaaga agtacgtttg gtttacctca atgagtttta
    11941 taacgcccac catttgctcg aaaaagtggc tgacctactt aaaccttacc cagatgtact
    12001 acttaaaatt attcgggtac acaccaaagg agcgagagat gaaacaggct tggctcgttt
    12061 tgtacccact atcgagcaaa ccgatgaact ggcagcattt gcaaaacggc acggtattca
    12121 aaaagttatt actatttact aatggagact tacgatggat atactaatta gcataattgg
    12181 tgtttttgtg ttattaggct taggtgtttt attatcaaat aatcgcaaag ccattaaatt
    12241 tcgcacaatt ttgggcgctt tggcgattca aattggtttt gccgctctta ttctttactt
    12301 tccagcggga agaaatgcat tgctagctac tgcaaattgt gtgagcaata ttattaatta
    12361 tggtaacgaa ggtattagct ttgtgtttgg caatttagcg aatccgagta atagcagcat
    12421 tggttttgtg tttgcggtta aagtattgcc tattattatc ttcttctctg cgttaatttc
    12481 aatgctttac taccttggtg tgatgcaatg ggtgattaaa attattggtg gagcattaca
    12541 aaaaacacta ggcacttcca aggcagaatc aatgtcagcg gcagctaatt atttttgttg
    12601 gtcagacaga agctcctcta gttgtaaaac catacattag ccgtatgaca gagtcagaat
    12661 tatttgccat tatggttggt ggaactgctt caattgctgg ttccgttatg gctggttatg
    12721 ccggaatggg cgttccttta acttatctta ttgcggcctc ctttatggct gcaccagctg
    12781 ggttactatt tgctaaatta atgtatcctc aaacggaaac cttggagagt aaagcagatg
    12841 acaatgttga agttgaaaag ccaaataacg tggttgaggc cctagctaat ggtgctagtg
    12901 caggtgttac tttggctatt aatgtcggtg ctatgttaat agcatttatt gcagtgatcg
    12961 ctttattaaa tggctttatt ggtggcattg gtaattggtt tggttatgag gggctaacct
    13021 tacaaatttt attaggttat ttattccaac cacttgcttt cttaatcggt gtgccgtggc
    13081 aagatgccga tattgcaggt caaatgatag gtatgaaact tgctgttaat gaatttgtcg
    13141 gatatcttga gtttgctaaa tatctacagc ctgatgctgt ggtgcaatta agcgataaaa
    13201 ctaaggcaat aattactttt gctttatgtg gttttgcaaa ctttagagca attgcggtat
    13261 tgattagtgg tatcggaagt atggcaccaa gtcggcgttc agatattgct cgtttaggtt
    13321 taaaagcagt gattggcggc acattggcga acttaatgag tgcaactata gcgggtttct
    13381 ttattggttt aagtggtgcc acattaggtt gatacaagcg gttaaattga ctcacttttt
    13441 tgcaaaaagc ccaagtaagt taaatgacta cttgggcttt gtttaatgaa ctagctctta
    13501 gtttcggttt ttgctgtgtt atccttttcc gctttggctg tctgtgtttt cgaagttgtc
    13561 tgtttttttg cggattggct agcagtagct gcttttctta ctttctttgt tttaacttct
    13621 acttccgcat ttttagagtt tttatccgct aaccatgcct gcactttagc taagaatatt
    13681 tgtcccatcg ggcgaggatc gccagaaaat aatgtttgta atttattatt ttcaataatg
    13741 tcgcgtctaa ttgctaagcg ttcttcgtgg ttttccgcta aacgaatagc ttgagtaacg
    13801 tattcctctg ctgtttgggt aattaaccaa ttaggtagcc cgaggcgctt aaataaacct
    13861 tcatcaatat gttcatgaac ttcagggcct gttttacaga caccaactaa accaagcgta
    13921 accatatcga taatgccgtt tgtatttcca aatgggaatg gatttagcat catatcgcaa
    13981 ttatgtagaa tatttagata ttcatcatat ggcgaatgtg ggtgtgcggt tgcatcattt
    14041 cctaaatagc ttttgataaa acgttccaca taaggatgcg taattccact agattgccct
    14101 aatgcaaaat ggaaatgagt ttttaccttc gccctatcac gaatggcttt taatgcctct
    14161 aagaaatatg ggtttaattt catagtggtt gatgcaattc cgatatggat aacctctgga
    14221 ttttcacgta ggttatagac cacattttga ggcgctaatg cggaaggcac atagggtagc
    14281 gcatcttttg gaagacgtaa taattgttca ctaaagcagc tttcggaacc aacatagtca
    14341 tcttctacga tgacatattc aataaaatca gagtgtgtag ttgccggatg acctagcgca
    14401 acagcttgaa ttggtgctag gcgagtgtta ctagcgaaaa tagtggttaa atccattcca
    14461 atgctaggca tatagaatac ggctggatta tttttatcac agatatcttt taaaaagctt
    14521 aagcggtcaa atagtgagcc atcttgtggt aataaatgaa attcgtcgaa tacctgttgc
    14581 cccatttcat ctacagcatc actgcctagc ccaataagat ggaaatgttc gcgtgcagca
    14641 accattgagg ttgaatgagt acgataaata gaatgtgatg aatggaaatg ctccaataat
    14701 actaccatga caggtttatt atttctggta ccaagctgtt caatttttct atcttcccaa
    14761 ccgacagaaa gtaaatgacg acgaattaca gcatttaacg accgttttac attatgttta
    14821 tttgcttcaa tatcataact gcaatgcata taaacatcgt gtgaaatggc gctcggtagc
    14881 ttgttcaagt tttcaatttg cgctaatttt tctgggaacc attgcaaaat agccgcgcgt
    14941 tttgcaaaag cagaggatgt accaataaat ctaggtgatt ggagtgcaaa acaaagtgat
    15001 gcggtgagat ctgatgaagc attccatgca gcatctagat tcaataaaat attagattcc
    15061 ggtaagtata aaatacagaa cttaattagt gcttgtaatg tggcatctaa atcaaccgta
    15121 tttggattag cagattcttt atttctattg taagtacgca agatatggtc tgcgtttacg
    15181 tatggagaac tggcaaaaat taatgctatc cagcgttgta atgtcagaaa acgcatagca
    15241 ccgtgttcgg agatctctaa tgcaggatct tcaaacaagc gagtaatcgc taccgccatt
    15301 cgagtacaga aatagatagc tttatcattt tctaaatttt caatctgctc tggcatattc
    15361 aattcaatat tggaaatgcc accaaaatta ctatctaatt ttgaaaggat agacagtagc
    15421 tcggtacaag ccgattcata atcttttttc gcgaccgcct gctcaaaacg gatgacgcta
    15481 ggcatatttt ctgctgacat aatgtatcct tagttgttta aaattcccca cagatcatac
    15541 tcatctgcat gtgtaatggt tactgaaata atttgcccta ctgtcactaa ttggtttgaa
    15601 ggattatcta catagactac accgtcaatt tccggtgcat ctgccattga gcgaccgata
    15661 atgccttctt cgtcaatgtc atcaataatt acttgtacgg ttttgccgat ttttgcttgt
    15721 aagcgagcag cggaaatttc ttgttgtagt tgcataaaac ggtggaaacg ttcctctttt
    15781 acttcttccg gaacttgatc cggcatatcg gtagcaacag caccttccac tgggctgaat
    15841 ttaaagcaac caacacgatc taattgtgct tcttttaaga aatcgagtaa tagttggaaa
    15901 tcttcttctg tttcccccgg gaagccgaca ataaaggtag aacgcagagt taattcaggg
    15961 caaatttcac gccatttttt aatgcgttct aaggttcttt cgattgaacc cgggcgtttc
    16021 atcgctttta agattttcgg gctggcgtgt tggagtggaa tatccaaata cggcaaaatt
    16081 ttgccggcag ccataagcgg aattaaatca tctacgtgtg ggtatgggta aacatagtgc
    16141 aaacgcaccc acacgcccat tgagcctaat tgctcacata gcgtaattaa attactttta
    16201 atcggcatac cgttccagaa aacggttttg gttgcttctt cttttttgcg atctaacgaa
    16261 taggctgagg tgtcttgtga gacgattaac agctctttta ccccggcatc aactaggcgt
    16321 tttgcttcat ctaatacttg cacgatagaa cggcttgcta aatcgccacg cattgaagga
    16381 ataatgcaga aagtgcagcg atgatcgcag ccttcggaaa ttttcaaata agcgtaatgc
    16441 ttcggtgtta atttaatccc ttgttttggc actaagctgg tgtaagggtt aaattccggt
    16501 tttggcacat atttatggac gtggttcatt accgcctcat agctatgtgg ccctgtaatt
    16561 tccaatactt tagggtgtac ctcacgaatt tggttttctt ttgcccctaa acagccggtg
    16621 acaattactt ttccgttagc ttctaacgct tcaccaatgc tttcaagaga ttcttgtact
    16681 gcggaatcaa taaaaccgca ggtgtttaca atcacaagat ccgcattttc ataactaggg
    16741 atgatgttat aaccatccgc acgcagttcg gtcaaaatac gttcggaatc aactaaattt
    16801 ttagggcagc ctaagctgat aaaaccaata tttggtgaag cactcatata actctcaata
    16861 actaaaaaga aaaatgccta caatttttgt ctgtaggcaa aaaactaaca agattctaca
    16921 aaatcttgcc caaaatagcg ataacaagcg gtcaattttt aataaacatt tacaaacttg
    16981 aaatttcgct aacaattaaa attaatcgat attatttagc attgctaata caatcgtgga
    17041 agatttttct gcggctaatg gcagaaattc ttcaaaagaa aggtgggatt ctttgtccgc
    17101 tacatccgat actgctctta cgattacaaa tggaaggtta aaaccgtgac aaacctgcgc
    17161 aatggctgct gcttccattt cgactgcaac gacattcggg aaattctgac gaatttgatt
    17221 aatcttatca ttaccgttaa taaaggcatc gccgctacag attaagcctg aaaccacatt
    17281 gtaaccggct tttttcgctt ccttttgagc taattcgact aattgctcgt ttggcgaaaa
    17341 tgttggcggg tttgccggta gttgcccgat ttcataacca aaggcggtca catcaacatc
    17401 gtgataacga acttcggttg aaatcaaaat atcacctacg tttaaatctg gatctaatcc
    17461 accggcagag cctgtattaa taatcatatc cggctgggtg agctgtatca gtaaggtagt
    17521 gccgatggcg gcagcaactt tgccgatacc cgattgtaat aatgccacac gggtattgtt
    17581 aattttgcct tcaaaaattt tacaacctgc taattcagtg actttaggtt caaccattac
    17641 ttggcgtaaa atctcaattt cttgtgccat cgcaccaata ataccaattt tcattacttt
    17701 ccttctctaa tgtattgttt attttttgaa aaaaacgcta ttttaacagc attaatagtg
    17761 aggagggggt gtttcttctg cttgtgaagc aacttggctt agttgagccc ctttcaattt
    17821 ctcagcaata tggcgaatct gagtttgtaa cttatcaatt gcaaattgtt gctcaataag
    17881 tgcttgattt aactcttcaa taatcagctc ttggaaagca actttagtct ccaattcggt
    17941 aatttttgcc
//
LOCUS       DANLZD010000045        17680 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.045, whole genome shotgun sequence.
ACCESSION   DANLZD010000045 DANLZD010000000
VERSION     DANLZD010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17680)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17680)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17680
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.045"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(21..560)
                     /locus_tag="PXE26_001097"
     CDS             complement(21..560)
                     /locus_tag="PXE26_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDL5593692.1"
                     /translation="MNELYEKYKDEPSMLVAIADGEGNIGVLEDIFLYKKQLAFSYVT
                     PLERWNWLHQCNLNSYAPAPLSVIEFYIQNGVEINAQDCYGMTPLHYAMRAKNVDAAI
                     ALLNAGADPNIPNQDNLIPLSMIGYLPDRLDVLELMLEKGANVHFLVNKNETILESYK
                     PTEMEPNLAPIYELMLKYA"
     gene            complement(562..10206)
                     /locus_tag="PXE26_001098"
     CDS             complement(562..10206)
                     /locus_tag="PXE26_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin repeat-containing protein"
                     /protein_id="HDL5593693.1"
                     /translation="MNKHCFRTIFSKTLQRIVVVSELAKLAGKSESESMTSGAILQKI
                     CKIRPLAFSLFCALGFVTLSDNAMAETLIIQADSTAPKNQQPIILQTANGLPQINIQT
                     PNDKGLSHNKYSQFDVAEKGAILNNSRTNTATQQAGMVQGNPYLARGEAKVILNEVNS
                     SKPSVMKGYVEVAGKKAEVIIANPSGLHCDGCGIINADRATLTTGKPQINQGNLEGFV
                     VEKGKVTVAGKGLDNSRVDYTDILAREAKINAGVWSKKETKVITGKNTVKRSNSDNNL
                     QIIHTNQPLAGEEKPTVAIDVGELGGMYAGKIHLIGTEQGVGVRNAGHIGASADTLTI
                     DSQGRIVNSGTFNAQRQVQLNAQHGIDNQGKIENKQGNIQLNSKADIQNSGSIVARGG
                     NIQKKAETKIQQSGETVAKGNITYTARQIHADKNSLIAAGVDVTDTAQGEVRKLEAQS
                     VAGKTIQLTAPEKTTVQGKNIASGKINVAAAEIDANQSQNNAHTVEYSAKSGDIQANS
                     AQFSANQIKLTTPKWLSTEGSQLTAEVIEAQQANLNARGSVWKQTGEQDFRLKAESIH
                     TDSARFSVGGHFEIDGNRLTNNQGLLSSGKRLGLNLNDAVDSVDGKLVAKGELSIRAP
                     LLNNQQGLILSGEKQAITVNTLKNQSGVITSQTEQTLDITSELQNQGGRISASGVAIN
                     AQSLDNREQGEISSVKELALTVSQQVDNRHGVIQSVGNLTLNSTLLDNQGGVLKSATD
                     ITLNVPTVLNNRISENGSLIEAGGSLTMNSFEVENQGTLARQPQPIQGIIASQFVLNS
                     TKQLNNEKGGIYIGSSARFTLSDSLNNRNGEILSWGDLAIFGGKSLTMTNTEGKVSAN
                     NGLEITAKALSGDGDVQAGDIRLNLQENFDITKDINANRSMIIQTEGDILNRKKLAAN
                     DRLQLTANQITNAQNARISSADTRLTATSTVYNEGLINSRSDNDNAQTVIKAQEIHNI
                     GTGNIYGDKVALGAERILNQDKDGTSATIAARQSLGLAAKVIENNTLVYEANKKSGSL
                     IYSGGEIAIGRQLNEQDTVIGNAGQLHNRSSIIEAEGRIQLNADKVANVNSHYRSELE
                     TTDRQTVNEHFILPRDKHNRGGSDVYDNGHLPTINVNQLRKGYYRKTWSYWQKYDEAN
                     LPVITDISQLNATTVLAKPYAQSCANDESVDCTLLPAGNYKKDNPVWTWFNLTPPAED
                     APEMTPEIIQAMNEEDLANQHLSEAEQEKLQKEQGQGIAPVVPARPIEPVRGSTETEA
                     QYQKRLQTYQAELKAYEAAEAAYQRYVLLKPLIDWEAKYGANIQALDEAIAKHNKANL
                     SQEYPHFWNLWIKERMVKENITKASLPAQILAGGDLTYQSDEFINDKSWVIAGKALNP
                     IGRSRIANLDDADAVRQDWELGRRQFSFTEYHGGTRRRHSRYDENDGPLARLKEVHKD
                     MNIFVELENTSPTAYTDYVDAKAANAVKPEGNQVERGNLPDAPNPPTMAIERIPSPNA
                     AAFEVRSMTVDTRLPNQGLYRINPQADSHVLIETDPDFTDKKRWLSSDYMFNALRHDH
                     NNVHKRLGDGFYEQRLIREQINRLTGRQFLGDYTDFDSQYKALMDAGITFAQKFNLRL
                     GITLSPEQVASLTSDIVWFETQTVRLPSGETVSVLVPKVYALARKGDIDGKGSLISAD
                     ALTINSKEIVNQGTIAGRRLAQFNAERLENSGTLSGGVLAAKVSGDLENIGGKIEADK
                     AILLDIAGNFNHTSTTRTTQIDLDGFKRAETNLDRKALLHVKDENGLLQVQAGNITSA
                     GADIINDGQGQTYLSAKNQLNLTALQVGFDEKMGGGNHYRNEALNDVVISRVQGKGDV
                     VVSGKNLYSEGADLDAKARLALLAENDMVLGSATRSRDYEEYHKTKSGGALAKKTKTT
                     YDNISETEHKGTELTGEDILVKAGHDIQGESLLAVSRSGDIDIIGGNNVTLSSATNQL
                     SEQHIRETKRSGFLNGGEIGFTIGSQKTRQENSLEGAIQSTARNTLGSEGGNIRIQAG
                     NKASVSNVDVLISNEKTAVISGKNGVRVESGKDVINSTDNYEFSQSGLSIALSTPVTD
                     AVQSARQSVQKAKATQNEKLKGVYAVKAAEDAVIAAQNAQKVAETLGNLGNALTENHA
                     AAENPAVKISVSLGTQKQQRESRSQSVTHSKSTLNGGNIALISGAGKVALEGVDTRVK
                     DTLLLDGKLGIESKGVADTYQNNTKNKNHSASVGVFIGLDRDSFGIGFEAGVSGGKGK
                     ENIETETWQNNQLQAGKIVTNSANGKLMLDATNVKANHWEGEVQDFEARSRQDISKYK
                     SEYTEGSVHGTLAVGTTGVNGHVAYNGAKLNTAQVENQTAIDIGKSGMDVKVKKNAHF
                     EGAVMTSQAEKENNRFQAGTLTTGDIENHSELKTRSVAISGGTSGVNPMSALSLLGNK
                     NESERSTTKAAIGENIAITLTEDLNAETTLNHLNRDTQNANQKVTKYDISEVKETQEL
                     VKGIGEIAEKAYQIYTHSEREKVTEAKLELGKAQAQKASKEEIGKLEANLDRLQKEFD
                     KNYGTGSKTKRAVEAVTAALQGLAAKDVGQAAVGLASPYLNAEIKKYTEGDTQANLIA
                     HALLGAVEAAATGNNVLAGAAAGAGSEAAADFIVKTLYKGKSTQDLTEAEKQNVALLS
                     QLASGLASGLIGDSTQSAAVGADIGKRAVENNYLSNWQEQKRSQELKSCHGDARCENQ
                     VRLYWGLVDIGQDVSFVSGAVAGVPENLAESVEGLISMFSSPIETIVAMKELIAREDT
                     LSYIANMTKQEYLAKLDKMQVYYEQAGAVGSFNAGKEFGNMMTDVVTALTGAGALVKT
                     GVGTTAKIVTKSGKELAIPKTRSSASLGTCSFHGDMEVKTDKGYRQISSIKVGDKVLA
                     KNERTGITTYQKVQAHYSNPYDYTVYVEVADSKGKYHTIVSNKIHPFFTQVLSGRVPI
                     SSEGHSYNGEIAKAQWVDAQHLQKGYRLLAESGEWQTVTKVKIKQERLKAYNMTVEKD
                     HTYFIRGTNADNEGVWVHNDCWHALPNDAKQVKNIDGYKAYQFTDPKDGKVVTVVQKD
                     LNRFETPNHQAGVDPHFNRLSQQIDAETGRYLSTDNPVDGLYNRAYLRSETLQKIYAN
                     YEKLPNGNYRNKLTRQEIEQPIDIGHMYGWEHRRLSLAAKELNWSQKQFNDYVNARPE
                     NFRLENMSENRSHKNEMPGKHDIQRIKSDMEKFLKEGK"
     gene            complement(10258..12033)
                     /locus_tag="PXE26_001099"
     CDS             complement(10258..12033)
                     /locus_tag="PXE26_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HDL5593694.1"
                     /translation="MKTPQNLILSTVLLSASFVAEANSSSLVQQARIDATQQQIDAAQ
                     QHRQQQYQQNQAEKFQPKADVRLETQINDTLTLSNHELPCYPIHQITLIDYSPDNSLT
                     TSQFQWAFEKAVKSFHLTLPHCFGGEGLAVLMKQIQNEIIGKGYVTTRVVTAEQDLRG
                     GKLVLTVIPGKIRNTLVVDSGKVPRFTKLHALTGFTFAEGDILNVRDIEQSLENLKRV
                     PTAEANIEILPSSSEKAEVGDSDLKISYSQAFPFRLNLGLDDAGSKSTGKLQTSATLS
                     IDNIFSANDLFYTSFTHSMKQKGDDNGRRASKNLTLYYSVPFGYWQLAFSHTHHRYHQ
                     EVFGAFDKSYLYAGESDTDKLTFSYLLYRDAKRKTSLSGSLWPRQSQNYIDGSEIEVQ
                     KRRMAGWEAGFSHKEYFPTATLELSANFKRGTAARGALSAPEEDYGEGTSRPKIITAS
                     ASLTKPFFWGKQPWQWQSSLNAQWNKTPLVPQDRFSIGGRYTIRGFDGELTLSGERGW
                     NWRNELSWQFNPNHAFYWAVDGGRVSGWATENQLGHHLMGTAIGFRGGVKGFSYDVFA
                     GRPMRKPEGFKTSDTVAGFNIGYNF"
     gene            12188..13273
                     /gene="queA"
                     /locus_tag="PXE26_001100"
     CDS             12188..13273
                     /gene="queA"
                     /locus_tag="PXE26_001100"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HDL5593695.1"
                     /translation="MLVSDFHFNLPDELIARYPTAERSASRLLHLNGETGEFADQQFV
                     DLYDHINEGDLLIFNNTRVIPARLYGRKPSGGKVEALVERVLDEHRCLAHVKASKAPK
                     EGAELIFGEDKLGEGKGFTATMVARHDTLFELVFNEEQPLFELLQQAGHMPLPPYIDR
                     PDEDADQERYQTVYSKVLGAVAAPTAGLHFDNAMLEKLKAKGVDTAFVTLHVGAGTFQ
                     PVRVETIEDHKMHAEYAEVSQEVVDKILATKAKGKRVIAIGTTSVRSVESAAQAAEKD
                     GKLIAPFFSDTAIFLYPGKTFKVIDALVTNFHLPESTLIMLVSAFAGYRNTMNAYAHA
                     VETKYRFFSYGDAMFINKNPNALSDVP"
     gene            complement(13300..13838)
                     /locus_tag="PXE26_001101"
                     /pseudo
     CDS             complement(13300..13838)
                     /locus_tag="PXE26_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(13851..16133)
                     /locus_tag="PXE26_001102"
     CDS             complement(13851..16133)
                     /locus_tag="PXE26_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HDL5593696.1"
                     /translation="MTLDRFCIALILFHLPILWLPKAFLFVGIVIGTLVLILSVYLRS
                     KLTAVLGLLVCIGYIQIIQVAKNAEKTTASKTPVQFEISKILKQTDYQTAIATLNTGE
                     KIYLNWQSKQPLLLNQFYQAELALRPISARSNIGNFDRQRWYFANHINMTATVRKVET
                     LAKTDYSLRTNWLNKVKAETDALPTQGFLLALAFGERAWLKTEHWGQFQQTATAHLIA
                     ISGLHIGLAMLFGVYFAKGVQWLCLKSELTALQAVGFSLYFARIVSFITAFGYSYLAG
                     FAVPTARALLAIAFVLLCQVLRRHYTPWQYWGRIVALLILIDPLSLLSDSFWLSILAV
                     ASLILWYQYFPLSRFLNDEYRKKITKFNRLWLSLLHLQIGIWLIFSPVQLYFFEGISA
                     FALLANLIIVPLYSFLLVPLILFTLLTDNLFSTWLLADYLAQFSLWLLDPFSNAWFAL
                     SHWQQWQLLSLNLLVLVLLYCKLYRLSYKKWLSAVAVSLLFNLSFYLPKLFNQTQTEW
                     IMFDVGQGLAMAFIYQQNKAVIYDTGSSWQANDGSRNSMAKMEILPYLKRNGIEVEAI
                     FLSHDDNDHSGGVVELLQAYPKARLISSSKVTYHNINPEPCIAGTSWQFGEWQLLAIY
                     PSHIAERAKNQDSCVILAKNDRLKILLTGDSGVEQERQFAHQLGKIDFLQVGHHGSKS
                     STGETLLSITQPAFAVISAGRWNPWKLPNKQIIERLNRRHINVLNTVETGMIRVKFYP
                     SSIEIEQARGAFSPWYKQFY"
     gene            complement(16275..17489)
                     /gene="sstT"
                     /locus_tag="PXE26_001103"
     CDS             complement(16275..17489)
                     /gene="sstT"
                     /locus_tag="PXE26_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HDL5593697.1"
                     /translation="MSQSLSSKILGGNLVLRIAIGLVLGVLLAFINKEWATSVGVLGQ
                     FFVKSLRAIAPILVFVLVLAAIANKEVGSDSKLKPILVLYVLGTFFAALTAVVLSFMF
                     PTTLELTASPDGLTPPQGIGEILKTVIFNLVDNPLVALSNANFIGILAWSIGLGIAFR
                     HGSASSKAFLNDLANAVSFVVKVVIAFAPIGVFGLVAETVAINGIDAFEDYARLLVVL
                     VGAMLFVALVLNPLLVYWKIRRNPYPLTFTCLRESGVTAFFTRSSAANIPVNMNLAKR
                     LGVRDEIASVAIPLGASINMAGAAITVTVLTLAAAYTQGIQPDFATALLLSVVASICA
                     CGASGVAGGSLLLIPLACSLFNIPNDIAAQVIGVGFVIGVIQDSVETALNSSTDVLFT
                     AAVSYAEDQKSA"
BASE COUNT         4584 a         4120 c         3487 g         5489 t
ORIGIN      
        1 atatatattc tatgcatgca ctaagcatat ttcagcatta gttcatatat aggtgctaaa
       61 ttaggctcca tctctgttgg tttatagctt tccaatatcg tttcattttt attaactaaa
      121 aaatgtacat tcgcaccttt ctctaacata agttctaaaa catctaatct atcaggtaaa
      181 taccctatca ttgataaagg tattaaatta tcttgatttg gaatattcgg atctgccccc
      241 gcatttaata atgctatcgc tgcatcaaca ttctttgccc tcattgcata atgtaaaggg
      301 gtcattccgt agcaatcttg ggcatttatt tccactccat tttgtatata aaattcaatc
      361 acagaaagtg gtgctggtgc ataagaatta agattacatt gatgtaacca attccatctt
      421 tctaatggtg taacataaga gaatgctaat tgctttttat ataaaaaaat atcttctaat
      481 actccaatgt taccttcgcc atctgcaatg gcaactagca ttgagggttc atctttatat
      541 ttttcatata attcattcat attatttacc ttcttttaag aatttttcca tatcggattt
      601 gattcgttga atatcatgtt ttcctggcat ctcattctta tggctacgat tttcagacat
      661 attttctaat ctgaaattct ccggtctcgc attaacataa tcattaaatt gtttttgact
      721 ccaatttaat tcttttgccg ctaatgataa tcggcgatgt tcccagccat acatatgacc
      781 tatatcaata ggctgttcaa tttcttgacg ggttaattta ttgcgataat taccatttgg
      841 caatttttca taattagcat aaattttctg taacgtttcc gagcgtaaat aagctcggtt
      901 atatagccca tctaccggat tatctgtcga taaatagcgt cccgtttcgg catcaatttg
      961 ctgagacaaa cggttaaaat gtggatctac cccggcttga tggtttggcg tttcaaaacg
     1021 attgagatct ttttgaacta ctgtcaccac tttcccgtct ttcgggtctg tgaactgata
     1081 agctttatag ccatcaatat tttttacctg tttggcatca ttcggtaaag cgtgccaaca
     1141 atcattatgc acccataccc cttcattatc ggcatttgta cctctaataa agtaagtatg
     1201 atctttctct accgtcatat tgtaggcttt taatctttcc tgtttgattt ttaccttagt
     1261 gacagtctgc cactcaccac tttcagcaag taagcgatag cctttttgca aatgttgagc
     1321 atcaacccac tgagcttttg ctatctctcc gttgtaagaa tgcccctccg aagaaatcgg
     1381 cactctgccc gataatactt gcgtaaagaa cgggtggatt ttgtttgaca caatggtgtg
     1441 gtattttcct ttgctgtctg cgacttctac atacaccgta taatcgtatg gattactgta
     1501 atgagcttgg actttctgat aggtggttat accggtgcgt tcatttttcg ccagcacctt
     1561 atcgcccact ttaatgctgg aaatctgtcg ataaccttta tcagttttga cttccatatc
     1621 accgtggaat gagcaagtgc ctaaactagc gctcgatctg gtcttaggaa tcgcaagttc
     1681 tttacctgat ttggtgacta ttttcgccgt tgtccctaca cctgttttaa caagagcacc
     1741 agcaccggtt aatgctgtca ccacatcagt catcatattg ccaaactctt ttccggcatt
     1801 aaaagaacct acagcccctg cctgttcata gtaaacctgc attttatcga gtttagctaa
     1861 atactcctgt ttagtcatat tagcaatata ggagagcgta tcttctcttg cgatcaattc
     1921 tttcatcgcc acaatagttt ctattgggct tgagaacatg gagatcaatc cttcaacgct
     1981 ctcagcgaga ttctcaggaa caccagcaac ggcgcctgat acaaaactaa catcttgccc
     2041 aatatcaact aatccccaat ataatcgaac ttggttttca cagcgggcat caccatggca
     2101 ggattttaat tcttgtgagc gtttctgctc ctgccagttc gagaggtagt tattctccac
     2161 tgcccttttc ccaatatccg ccccaaccgc tgccgattgt gtactatccc ctatcaaacc
     2221 tgaagccagt ccgcttgcaa gctggcttag caacgccaca ttctgtttct cggcttcggt
     2281 taagtcttgc gtggatttgc ccttgtagag ggttttaact ataaagtccg ctgccgcttc
     2341 gctccctgcg cctgcagcag cccctgccag tacattgttc cctgtcgcag ccgcttccac
     2401 cgcacccagt aaggcgtggg caatcaggtt ggcttgggta tccccttcgg tgtacttttt
     2461 gatttctgca tttaagtatg gtgaggctaa acccactgcc gcttgtccca cgtctttcgc
     2521 cgctaaacct tgcaaggctg ccgtcaccgc ttccaccgct cgtttggttt tactgcccgt
     2581 gccgtagttt ttatcaaact ctttttgcaa gcggtctaaa ttggcttcta atttaccaat
     2641 ctcttccttg ctcgcttttt gagcttgtgc tttgcccaat tccagcttcg cttccgtcac
     2701 tttttcacgc tcactatgcg tgtaaatctg ataagccttt tctgcaatct cgcctatgcc
     2761 tttcaccagc tcttgtgttt ctttcacctc actgatatcg tatttcgtca ctttttgatt
     2821 ggcgttttgc gtatctcggt tgagatgatt aagcgtagtt tccgcattta ggtcttcggt
     2881 gagggtgata gcgatatttt ctccaatcgc tgcctttgtt gtgcttcgct cgctttcgtt
     2941 tttattgccc agtaagctca gtgccgacat cgggttcacc ccacttgtcc ctccgctaat
     3001 cgcgacactt cgggttttca attcactgtg gttttcaata tcgccggtgg tcagcgtgcc
     3061 ggcttggaag cggttgtttt ctttctccgc ttggctagtc attaccgctc cctcaaaatg
     3121 ggcgttcttt ttcactttaa cgtccattcc actcttgcct atgtcgattg cagtttggtt
     3181 ttccacctga gcagtgttca acttcgctcc attatatgcc acatgaccat ttactcctgt
     3241 tgtccctacc gccaatgtgc catgtacgct gccttctgtg tattcgcttt tatatttgct
     3301 tatatcttgt cgacttcttg cctcaaaatc ttgtacctca ccttcccaat gatttgcttt
     3361 gacattggtt gcatccagca tgagtttacc atttgcagaa tttgtaacaa ttttacccgc
     3421 ttgcagttgg ttgttctgcc acgtttcagt ttcgatattc tccttgcctt tacctccact
     3481 cactcctgcc tcaaaaccaa taccaaaact atctctatct aaaccgataa atacgcccac
     3541 actcgcactg tgattcttat tcttagtgtt gttttgataa gtatccgcaa cacctttgga
     3601 ttcaataccc agcttaccgt caagcagcag ggtgtctttc actcgggtat ccaccccttc
     3661 cagcgcaact ttgcccgctc ccgaaatcaa ggcaatattg ccgccgttca gggtgctttt
     3721 gctgtgggtc acgctttgac tacggctttc tctttgctgt ttttgcgtgc cgagactgac
     3781 tgaaatcttc accgccggat tttctgccgc agcatggttt tctgtgagtg cattgccaag
     3841 attgcccagc gtttctgcca ctttctgagc attttgtgct gcaatcacgg catcctccgc
     3901 cgcttttacc gcatataccc ctttgagttt ctcgttttgt gttgccttcg ctttttgcac
     3961 cgattgccgt gccgattgca ccgcatccgt taccggtgta ctcaacgcaa tgcttaagcc
     4021 cgactggcta aattcataat tatcggtgct gttaataaca tctttccctg attcaacccg
     4081 taccccgttt ttgcctgaaa tcacggcggt tttttcgttg gaaatcagca catcgacatt
     4141 gctcacgctc gctttattgc cggcttgaat ccgaatattg cccccttcac tgcccaatgt
     4201 attgcgtgcc gtgctttgga ttgccccctc taagctgttc tcttggcgtg ttttttggct
     4261 accgatagta aagccgattt caccaccgtt caagaaaccg ctgcgttttg tctcacgaat
     4321 atgctgttct gaaagttggt ttgttgccga actgagcgtt acattattac cgccgataat
     4381 atcaatatcg ccactgcgtg agacggcaag aagactttca ccttgaatat cgtgaccggc
     4441 tttcactaaa atgtcttcac cggttagttc agtgcctttg tgttcggttt cagaaatatt
     4501 gtcataagtc gtttttgttt tcttcgctag cgcaccacca ctttttgttt tgtgatactc
     4561 ttcataatcg cgagaacgtg ttgcgctacc caacaccata tcattttcag ccagtaacgc
     4621 taaacgcgct ttggcatcca aatccgctcc ttcactgtaa aggtttttcc ctgaaaccac
     4681 cacatcgcct ttgccttgca cccgtgaaat gaccacatca ttcaaggctt cattacgata
     4741 gtgattgcca ccgcccattt tttcatcaaa accaacctgt aaagcggtca aattcaactg
     4801 attttttgca gataagtagg tctgcccctg tccgtcattg atgatgtctg cgcctgctga
     4861 ggtgatgttg cctgcctgta cttgcagcag tccattttca tctttaacgt gcagtagggc
     4921 tttgcggtca aggttggttt cagcgcgttt gaaaccgtct aggtcaatct gtgtggttcg
     4981 agtggtggag gtatggttaa aattgcccgc aatatccagc aaaatcgctt tatccgcttc
     5041 aatcttgccg ccgatattct ctagatcacc gctcactttg gcagcaagca cgccaccact
     5101 gagtgtgcca ctattctcta accgttcggc attaaactgt gctaaacggc ggcctgctat
     5161 cgtgccttgg tttacaatct ctttactgtt gatggtaagc gcatcggctg aaatcaggct
     5221 gcctttgccg tcaatatcac ctttgcgtgc aagggcatac actttcggca ctaataccga
     5281 taccgtttca ccgcttggca agcgaaccgt ttgggtttca aaccaaacaa tatcgctggt
     5341 caagcttgcc acttgctccg gcgataaggt aatgcctaac cgaagattga atttctgcgc
     5401 aaaggtgatg ccggcatcca tcagggcttt atattggcta tcaaaatccg tatagtcgcc
     5461 caaaaattgt ctgccggtta agcggttgat ttgctctcga attaagcgct gttcataaaa
     5521 accatcgccc aaacgtttat gcacattgtt atggtcgtgg cgtagggcat tgaacatata
     5581 atcactgctt aaccagcgtt ttttatcggt gaaatccgga tcggtttcga tcagaacatg
     5641 gctatccgct tgagggttaa tgcgataaag cccttggttt ggcaaacggg tatcgaccgt
     5701 cattgagcga acctcaaatg cggctgcatt cgggcttggt atgcgttcaa tcgccattgt
     5761 tggcggatta ggggcatcgg gtagattacc ccgttcaacc tgattgcctt ccggcttcac
     5821 ggcatttgct gctttagcgt ccacataatc tgtataagcg gtcggtgaag tattttccag
     5881 ctcgacaaaa atattcatat ccttatggac ttcttttaaa cgagcgagag gaccatcatt
     5941 ttcatcgtag cgggagtggc gacgtcttgt gcctccgtgg tactcagtaa aagagaattg
     6001 gcgccttccc agttcccaat cttggcgaac agcatctgca tcatcaaggt tggcaattct
     6061 actgcgacca atcgggttta acgctttgcc tgcaataacc caacttttat cgttgataaa
     6121 ttcatcgctt tgataagtga gatcgccacc tgccaagatc tgtgccggta agctggcttt
     6181 ggtgatattc tcttttacca tacgctcttt aatccacaaa ttccagaaat gcgggtattc
     6241 ttggcttaaa ttcgctttat tgtgctttgc aatcgcttca tctaatgctt gaatattggc
     6301 accatatttt gcttcccaat caattaacgg ttttaatagc acataacgct gataagccgc
     6361 ttctgccgct tcataggctt tcagttccgc ttgatatgtt tgtagtcgtt tttggtattg
     6421 ggcttccgtt tccgtagagc ctctaacagg ttcaatcggt cttgccggaa ccaccggtgc
     6481 aatgccttgc ccttgttcct tctgtaattt ttcctgctct gcctcactta aatgctgatt
     6541 cgctaaatct tcttcattca ttgcttgaat aatttcaggc gtcatttccg gtgcatcttc
     6601 agctggtggt gttaaattaa accacgtcca tactgggtta tcttttttat aattacctgc
     6661 aggtaataga gtacaatcta cactttcatc attcgcacag ctttgagcat agggttttgc
     6721 caatacggtc gtggcattca gctggctaat atcggtaatt accggcaagt ttgcttcatc
     6781 atacttttgc caatagctcc acgttttgcg atagtagcct ttgcggagtt gattcacatt
     6841 aattgtcggc aaatgcccgt tatcatatac atcacttcca cctcgattat gcttatctct
     6901 tggcaaaata aaatgttcgt tcacagtttg gcgatcagtg gtctccaatt ccgaacgata
     6961 atgactattt acattcgcta ccttatccgc attcaactga atacgccctt cagcttcaat
     7021 aatactgctg cggttatgta gctgccctgc gttgccaata acggtatctt gctcatttaa
     7081 ttgacgtcca atcgctatct ctcctccgct atatattaat gaaccgcttt tcttattcgc
     7141 ttcataaact agggtattat tttcaattac tttagccgct aaaccgagag attgacgagc
     7201 agcaatagtg gcagaggtcc cgtctttatc ttgatttagt atcctctccg cacctaacgc
     7261 caccttatcg ccataaatat tccctgtgcc gatattgtgg atttcttgag ctttaatcac
     7321 agtttgagcg ttatcgttgt ccgagcggct attgattaag ccttcgttat agacggttga
     7381 agttgcagtc aaacgggtat ctgccgagct tattcgggca ttttgtgcat tggttatttg
     7441 gtttgccgtg agctgcaagc ggtcatttgc ggctaatttt ttgcgattga gaatatcgcc
     7501 ctcagtctga ataatcatcg acctattcgc attgatatct ttggtaatat caaagttctc
     7561 ttgcaaattc aggcgaatat cgcctgcttg tacatcacca tcaccggata acgctttggc
     7621 agtgatctcc aaaccattat ttgcagaaac ttttccctcg gtattcgtca ttgtgagtga
     7681 ttttccgccg aaaatagcca gatcgcccca acttaaaatt tccccattac ggttatttaa
     7741 gctgtcgctg agggtaaatc gtgctgatga gccgatataa ataccgcctt tttcattatt
     7801 gagctgtttt gtgctgttca gtacaaactg cgatgcaata atcccctgta ttggctgagg
     7861 ttggcgtgcc aaggtacctt gattttccac ctcgaaactg ttcatcgtaa gtgagccacc
     7921 tgcttcaata agtgagccat tttccgagat ccgattattt aagacagtcg gtacattgag
     7981 cgtgatatct gtggccgatt tcagtacccc accttggtta tccaaaagcg tgctatttag
     8041 ggtgagattt cccacacttt gaataacacc gtgccgatta tctacttgtt gggaaaccgt
     8101 gagcgctaac tcttttactg aactaatttc tccctgctca cggttatcta aggattgagc
     8161 gttaatcgca acaccgctgg cggaaattcg cccgccttga ttttgcagtt cgctagttat
     8221 atcaagggtt tgctccgttt gagaggtgat cacccccgat tgatttttta acgtattgac
     8281 cgtaatcgcc tgtttttcgc cactcaaaat cagaccttgc tgattattca gcaatggagc
     8341 acgaatagat aactcgcctt ttgcaaccaa tttgccatcg actgaatcca cagcatcatt
     8401 taaatttagc cctaaacgct tgccactact taatagccct tggttatttg ttaaacgatt
     8461 accgtcaatc tcaaaatgtc cacccactga aaagcgagcc gagtcagtat ggatactctc
     8521 tgcttttagg cgaaaatcct gctcaccagt ctgcttccaa accgagccac gagcatttaa
     8581 attcgcttgt tgggcctcaa tcacctctgc ggttagctgg cttccttcag tggaaagcca
     8641 ttttggggtg gtgagcttga tctgatttgc actaaactgc gcactattcg cctgaatatc
     8701 gcccgatttt gcactgtatt caacggtatg ggcattattt tggctctgat tggcatcaat
     8761 ctcagctgcc gccacgttaa ttttccccga agcgatattt tttccctgca cagtggtttt
     8821 ttctggggca gtgagttgaa tagttttccc tgccacagat tgagcttcca gcttccgtac
     8881 ttcaccttgt gcagtgtcgg ttacgtccac cccagcggca atcagtgagt ttttgtcggc
     8941 gtgaatttgg cgggcggtgt aggtgatatt gccttttgcg accgtttcgc cactttgctg
     9001 gattttagtt tcggcttttt tctgaatatt gccacccctc gccacgatgg aaccgctatt
     9061 ttgaatatcg gctttcgagt taagctgaat attgccctgt ttattttcaa ttttgccttg
     9121 gttgtcaatc ccgtgttggg cattgagttg cacttgtctt tgagcgttga acgtgccgct
     9181 gtttacaatc cgcccttgac tgtcaatggt gagcgtatcg gcacttgcac cgatatgccc
     9241 agcgttacgc acgcccacgc cctgttccgt accaatcagg tggattttgc cggcatacat
     9301 tccgcccagc tcacccacat caatcgcaac tgtgggcttt tcttcccctg caagcggttg
     9361 atttgtatga ataatttgca aattgttgtc cgaatttgac cgcttgacgg tgtttttgcc
     9421 ggtaatgact ttagtctctt ttttcgacca gacaccggcg ttgattttcg cttctcgggc
     9481 gaggatatcg gtgtaatcca ctcggctgtt gtccagccct ttgccagcaa ccgttacctt
     9541 gcctttttcc actacaaaac cttctaaatt gccttgattt atctgtggtt ttccggtggt
     9601 cagcgtggct cggtcggcgt tgataatacc gcagccgtca cagtgcaagc cgctcgggtt
     9661 ggcgataatc acttccgctt ttttgccagc cacttccaca taacctttca ttaccgaagg
     9721 cttactggaa ttgacttcat ttaaaatcac cttcgcttcg ccacgggcaa gatacgggtt
     9781 gccttgcacc ataccggctt gttgggtggc ggtgttggtg cggctgttgt tgagaattgc
     9841 ccccttctcc gctacgtcaa attggctgta tttattgtgg gaaagccctt tatcgttcgg
     9901 ggtttgaata ttgatttgtg gcagcccgtt ggcggtttgc aaaataatcg gttgctgatt
     9961 tttcggggca gtgctatcgg cttgaataat caaagtttcc gccatagcgt tgtctgataa
    10021 ggtaacgaat cccaacgcac agaacaagct gaacgcaagc ggtcgaattt tgcaaatttt
    10081 ttgtaaaatt gcaccgcttg tcatactttc actttctgat ttacctgcta attttgctaa
    10141 ttcagatacc accacaatac gttgtaaggt cttgctgaaa atagtgcgaa aacaatgctt
    10201 attcataata attccttaat agcacaatat acttaataca atatgcccaa tcattcatta
    10261 aaaattgtaa ccaatattaa aaccggcaac ggtgtctgag gttttaaacc cttccggttt
    10321 tcgcatcggt ctaccggcaa acacgtcata actaaatcct ttaactccac cccgaaaccc
    10381 aatggctgtt cccattaaat gatgtccgag ctgattttcc gttgcccaac cggacactcg
    10441 accaccatct accgcccaat aaaaagcgtg gttcggatta aattgccagc tcaactcatt
    10501 acgccagttc cagccccgct caccggaaag agtcagttca ccgtcaaatc cacgtatggt
    10561 gtaacgcccg ccaatcgaaa aacggtcttg cggaaccaga ggggttttat tccattgggc
    10621 atttaggcta ctttgccact gccatggctg cttgccccaa aaaaacggtt tcgtcaggct
    10681 tgcacttgcc gtgatgattt tagggcgaga agtcccttcg ccataatctt cctcgggagc
    10741 agataatgcc cctcgtgctg ccgtacctcg tttgaaatta gccgaaagct caagcgtagc
    10801 ggtcgggaaa tattctttat gcgaaaaacc cgcttcccaa cctgccattc ggcgtttttg
    10861 tacttcaatt tctgagccgt caatatagtt ttgcgactgg cgtggccaaa gtgaaccgga
    10921 caagctcgtt ttacgtttgg catcacgata aagcaaataa gaaaaggtta atttatcggt
    10981 atcactttca ccggcgtaga gatagctctt gtcaaaggca ccaaatactt cttgatgata
    11041 acgatgatga gtgtgtgaaa atgctaactg ccaatagcca aacggcacgg aatagtaaag
    11101 cgtgagattt ttactggcac gtctgccgtt atcatcacct ttttgtttca tcgaatgggt
    11161 aaaagaggta tagaacaggt catttgccga aaaaatatta tctatagaca gagtggcgga
    11221 ggtttgtaat ttgcctgtgg atttcgagcc ggcatcgtcc agcccaagat ttaagcgaaa
    11281 tggaaacgct tgcgaatagc tgatttttaa atcactgtct cccacctccg ctttttcgct
    11341 tgagctgggt aaaatctcaa tatttgcctc cgccgtcggc acccgtttta gattttccag
    11401 agactgctca atatctcgca cattcagaat atcgccttcg gcaaaagtaa aaccggttaa
    11461 ggcgtgcagc ttggtaaaac gcggtacttt gccgctatct accactaaag tattgcgtat
    11521 tttgcccgga atcacggtta aaactaattt tccgccacgt aaatcttgct ccgcagtaac
    11581 cactcgtgta gtgacataac ctttgccaat aatttcattt tggatttgct tcatcaacac
    11641 agctaaccct tcaccaccaa agcagtgagg taatgtcaaa tgaaatgatt ttactgcttt
    11701 ttcaaacgcc cattggaatt ggctggtagt cagagaattg tcaggagaat agtcaatgag
    11761 agtgatttga tgaatggggt aacaaggcaa ttcgtgattg gaaagagtaa gtgtatcatt
    11821 gatttgtgtc tcgagccgta catcagcttt cggctggaat ttttctgctt gattttgttg
    11881 gtattgctgt tggcgatgtt gctgggcagc atcaatttgt tgttgagttg catcaatgcg
    11941 tgcttgttgt acaaggcttg aagaatttgc ttcagcaaca aaagaagcac ttaacaatac
    12001 cgtgcttaaa atcagatttt gtggggtttt cataagatca aataagtaag acattcaacg
    12061 tttttagtct ataaaaattt atgttgtttt gcaaactccg ttttatggag ctttatacat
    12121 atctgacgac tttggttttt tatgctatta tctccgccat ttttatacta tagagaatag
    12181 aataaccgtg ttagtttcag attttcattt caacttaccc gatgagctga ttgctcgcta
    12241 cccgactgcc gaacgctctg ccagccgttt attacactta aatggcgaaa caggcgaatt
    12301 tgccgatcaa caatttgtgg atttatacga tcatatcaac gaaggcgatc tattgatctt
    12361 caataacact cgagtgatcc cggctcgcct ttacggtcga aaacctagtg gcggcaaagt
    12421 agaggcatta gtggaacggg tgctagatga acaccgctgc ttggctcacg ttaaagcctc
    12481 aaaagcaccg aaagaagggg ctgaattgat ctttggggaa gataagctag gtgaaggcaa
    12541 aggctttacg gcgacaatgg tagctcgcca cgatactctg tttgaattgg tgtttaacga
    12601 agagcaaccg ttattcgaat tgctacagca agctggtcat atgcctcttc caccttatat
    12661 cgaccgcccc gatgaagatg ctgaccaaga gcgttatcaa accgtttata gcaaagtgtt
    12721 aggtgcagtt gccgccccta ccgccggttt gcattttgac aatgcaatgc ttgaaaaact
    12781 aaaagcaaaa ggggtggata ctgccttcgt aacattgcac gttggtgccg gcactttcca
    12841 gccggtacgg gtagaaacca ttgaagatca taaaatgcac gccgaatatg ccgaagtgag
    12901 ccaagaagta gtcgataaaa ttctcgcaac gaaagccaaa ggaaaaagag tgattgcaat
    12961 tggtacgaca tcagtacgtt cggttgaaag tgccgcccaa gcggctgaaa aagatgggaa
    13021 attgattgct ccgttctttt ctgacaccgc tattttcctt tacccgggaa aaacctttaa
    13081 agtcattgat gcgttagtca ccaatttcca tttaccggaa tccacgctaa ttatgttagt
    13141 ctcagcattt gccggctata gaaatacgat gaatgcctac gcccacgcag tagaaactaa
    13201 ataccgtttt ttcagctatg gcgatgcgat gtttatcaat aaaaacccaa atgcgttgag
    13261 tgatgttcct taatttatga gggttataag ggaataacat tatgaacaaa aacaatcttc
    13321 caaccatttt aagggattgt tttcaatata ttcaataatt tggaagtacg atgtttcatt
    13381 acgaataatg tgttcataat aattcctttg ccaaatttca gaaatatcgg tattttgacg
    13441 aacccattta gttacgccaa ttttaaaacc acgcacaata gagccgattg ttcgtgatgt
    13501 tccccgtaag ggcgaaacat ttttcgccct tatacatggg gcaaatgatg atttgcccct
    13561 acagtttcga cgatttcaat aatgccatgt aaatgattag gcataatcac aaagctatgc
    13621 aagcttacat ttggaaaatg atcgggtata tcttcccaac attgacgtac aatattccct
    13681 atcttattaa gcctcatttc atcatcaaca atctcaccga gaaaatggtg tttattttta
    13741 caacaaatag taatgaaata gaatccttgt gatcggtaat cataatgctt tagacgaatt
    13801 gaacgcctcc tatgaatctc cggctgatat ttctgcattt ttcttattcc ttaataaaac
    13861 tgcttatacc aaggggaaaa tgcccccctt gcctgctcaa tttcaataga acttgggtaa
    13921 aattttactc ttatcattcc cgtttctacg gtatttaata cattaatatg tcttctgttt
    13981 aatctctcaa taatctgttt attcggtaat ttccatgggt tccatcttcc agcagaaatc
    14041 actgcaaatg ctggctgggt aatcgataat aaagtttcgc cagtgctgct tttgctaccg
    14101 tgatgtccaa cctgtagaaa atcaattttg ccgagctgat gggcaaattg gcgttcttgt
    14161 tccacgccag aatcccctgt cagtaatatc ttcaagcggt cgtttttggc taaaataacg
    14221 caagagtctt ggtttttagc tcgttctgca atgtgtgacg ggtaaattgc caataattgc
    14281 cattcgccaa attgccacga tgttccggca atacaaggct cgggatttat attgtgatac
    14341 gtcaccttgc ttgaactaat taaccttgct tttgggtatg cttgcaataa ctccactacc
    14401 ccacctgaat gatcattatc atcgtgactt agaaaaatcg cctctacctc aatgccattt
    14461 cgctttaaat acggcaagat ttccattttt gccattgaat tgcgactacc atcatttgct
    14521 tgccaactgg agccggtatc gtaaattacc gctttatttt gttgataaat gaacgccatt
    14581 gccagccctt gcccaacatc aaacataatc cattctgttt gggtttgatt aaagagctta
    14641 gggagataaa aactcagatt gaacaatagg gataccgcta ctgcacttaa ccacttttta
    14701 taagatagcc gatataattt gcaatacagc aatactaaaa ccaataaatt cagtgaaagt
    14761 aactgccact gttgccaatg gcttaatgca aaccacgcat tagaaaatgg atctaacagc
    14821 cataggctaa attgagcaag atagtccgcc aacagccacg ttgaaaacag attgtcggtc
    14881 aagagcgtaa ataaaataag cggtacaagc aaaaagctat acaacggcac aataatcagg
    14941 ttggcaagca gtgcaaaagc agagatgccc tcaaaaaagt agagttgaac cggtgagaaa
    15001 atcagccaaa tgccgatttg taagtgcaaa agcgataacc acaagcggtt aaattttgtg
    15061 atttttttac gatattcatc gtttaaaaat cggctaagag gaaaatattg ataccataaa
    15121 attaaacttg ctaccgctaa aattgagagc caaaaactat cagaaagcag gctcaatggg
    15181 tcaattaaaa tcagtaacgc cactattctc ccccaatatt gccaaggggt atagtgtcgc
    15241 cgcagaactt ggcaaagcaa gacaaacgca atcgccagca acgctctggc ggtcggcacg
    15301 gcaaaaccgg ctaaatagct gtaaccaaat gcggtgatga agctaactat tcttgcaaaa
    15361 taaagtgaaa atccgaccgc ttgtaatgcg gtaagctcgc ttttcaagca aagccattgc
    15421 acgcctttgg caaagtaaac accaaacaac attgccagcc cgatatgcaa gcctgaaatg
    15481 gcaattagat gggcagtagc ggtttgttgg aattgccccc agtgttctgt tttcagccac
    15541 gccctttcac caaaagccag agccaataaa aagccttgcg taggcaaagc gtccgtttca
    15601 gctttcactt tattcagcca atttgttcgc aagctataat cagttttggc taatgtttcc
    15661 accttgcgaa ccgttgctgt catattgata tgattggcaa aataccaacg ctgtcggtca
    15721 aaattaccga tattgctacg agctgaaata ggacgaagag ccagttcggc ttgatagaat
    15781 tgattaagta acaacggctg tttcgattgc cagttcaagt agatcttctc gcctgtattt
    15841 agtgtcgcaa tcgctgtttg ataatcggtt tgttttaaga ttttactgat ttcaaattga
    15901 acaggcgttt tactagcagt cgttttttcc gcattttttg caacttgaat gatctgaata
    15961 tagccaatac aaaccaataa gccgagtaca gccgttaatt ttgagcgtag ataaacactc
    16021 aatatcagca ctaaggttcc tattactata cccacaaata gaaacgcttt aggcaaccat
    16081 aaaataggca gatgaaatag aatcagggca atacaaaaac ggtctaaagt cataattcgg
    16141 cttacttttt aaagctgagt atgccgtttg tgcttaatat tttcagaata aattttcaga
    16201 ttttcgacac agttcgcaaa aatacttgaa aaaataaagg cagacttttt agcctgcctt
    16261 ataaagaaga gatattatgc tgatttttga tcttcagcgt aacttactgc tgcagtgaat
    16321 aatacgtctg ttgatgaatt taatgcggtt tcaaccgagt cttgaatcac accaatcaca
    16381 aaacccaccc caattacttg agcagcaata tcgtttggaa tattaaataa actacaggct
    16441 aatggaatca ataataatga accgcctgcc acacctgatg cgccacaagc acagattgat
    16501 gcaactacgc ttaatagtag tgctgttgcg aaatcaggtt gaataccttg tgtataagct
    16561 gccgctaggg ttaatacggt tacagtaatc gctgcacctg ccatattaat acttgcacct
    16621 aatggaatag ctacagaagc gatctcatca cgaacgccca aacgcttggc taaattcata
    16681 ttcaccggaa tgttggctgc tgaactgcgg gtaaagaatg ccgttacacc actctctcgt
    16741 aaacaggtaa atgtaagtgg gtatgggttg cggcgaattt tccaatacac taataatgga
    16801 tttagtacta atgccacaaa taacattgcg ccaactaaga ctactaataa acgtgcgtaa
    16861 tcttcaaacg catcaatacc attgatggca acagtttcag ctactaaacc aaatacccca
    16921 ataggcgcaa atgcaatcac aactttcaca acaaacgaaa ctgcgttagc taaatcattt
    16981 aagaatgctt ttgaacttgc cgaaccatgg cggaatgcaa tccctaaacc gatagaccac
    17041 gcaagaatac cgataaagtt tgcattactt aatgcgacta atggattatc aactaagtta
    17101 aaaataacgg tttttagaat ttcaccaatg ccttgtggcg gggttaaacc gtctgggctt
    17161 gcagtaagct ctaatgtagt tgggaacata aagcttaaaa caacagccgt taatgccgca
    17221 aaaaatgtac ctaatacata aagcaccaga atcggcttta atttgctatc tgaaccaact
    17281 tctttatttg caatcgcagc caaaactaat acaaatacta aaataggcgc aatggcacgt
    17341 agtgatttca caaaaaattg acctaataca ccaacgctgg tagcccattc tttattaata
    17401 aatgccagca atacccctag cactaaacca atggcgatac gtaatactaa attaccgcca
    17461 agaatttttg atgataatga ttgactcata acccttcact tctgtaagac aacaaaaaat
    17521 aaggataaat aaaatttatc cgcctgaaaa aataggttta taagattagc ggaaaataaa
    17581 caaatatgga ataaacaagc ggtttatttt tcagattttt ttacaaaaaa gtgaagtttt
    17641 ttacattcca tggctatcat attatttttt ccttaggttc
//
LOCUS       DANLZD010000046        17453 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.046, whole genome shotgun sequence.
ACCESSION   DANLZD010000046 DANLZD010000000
VERSION     DANLZD010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17453)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17453)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17453
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.046"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..465
                     /locus_tag="PXE26_001104"
     CDS             <1..465
                     /locus_tag="PXE26_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593698.1"
                     /translation="NYIIDYKLLNIPEEQPNVIIEFMVNKDDNSILGEMTSTALCELI
                     PLTWSFRLESPKPTLLNLIFDRELKLSYLVSGGYTELSTFKIKEINSNLGTLTLTTQE
                     DKTGIFPPTIKLINFSSNIEDDIKEIEQSCLNSRKQLWEKRRKMQEEQKIPN"
     gene            582..3446
                     /locus_tag="PXE26_001105"
     CDS             582..3446
                     /locus_tag="PXE26_001105"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HDL5593699.1"
                     /translation="MTKQFTMEDRFNPSAVEQALYQHWESQGYFKPSEDINAPSYCIA
                     IPPPNVTGSLHMGHAFQQTLMDTLIRFNRMEGNNTLWQTGTDHAGIATQMVVERKIAA
                     EEGKTRHDYGREAFINKIWDWKAYSGGTISQQMRRLGNSIDWDRERFTMDEGLSNAVK
                     EVFVRLHEEGLIYRGKRLVNWDPKLHTAISDLEVENKESKGSLWHFRYPLANGAKTAD
                     GLDYLVVATTRPETMLGDTAVAVHPEDERYQALIGKSVILPLANREIPIIADEYVDRE
                     FGTGVVKITPAHDFNDYEVGKRHGLPMVNVMTLNADIRAEAEIIGTDGKPLSDYTAPI
                     PADYQGLERFAARKKIVADFEALGLLDQIKPHDLKVPYGDRGGVPIEPMLTDQWYVSV
                     KPLAEVATKAVEDGEIQFVPKQYENLYFSWMRDIQDWCISRQLWWGHRIPAWYDEQGN
                     VYVARDEAEVRAKHNLPADLPLKQDEDVLDTWFSSGLWTFSTLGWPEQTKELKMFHPT
                     DVLITGFDIIFFWVARMIMFTMHFIKDENGKPQVPFKTVYVTGLIRDEQGQKMSKSKG
                     NVLDPIDMIDGISLDDLLEKRTGNMMQPQLAEKIAKATRKEFAEGIVAHGTDALRFTL
                     TALASNGRDINWDMKRLEGYRNFCNKLWNASRYVLTNDKLDLSEGDVEFSLADRWIES
                     QFNRTVETFRTALSQYRFDLVANAIYEFTWDQFCDWYLELTKPIFFKGTDVQRRGASR
                     TLVNVLEKLLRLIHPVMPFITEEIWQKVKGFVGIEADTIMLQKFPQFDPLAIDETAES
                     QINFIKEVIVAVRNIRAESNIAPSKGLDLIARNFSADEVSILNANEVLLKSMAKLDSV
                     KVLENGENAPLSVAKLVANGEILIPMAGFINKEAELARLTKEMDKLKGEVARIEGKLS
                     NEAFVAKAPEQVIAKEREKMQEYLSGLEKLQVQYQEIEAL"
     gene            complement(3517..4110)
                     /locus_tag="PXE26_001106"
     CDS             complement(3517..4110)
                     /locus_tag="PXE26_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase"
                     /protein_id="HDL5593700.1"
                     /translation="MLTDQDIFNRYQTKKSEFEKQADISLIGHSLFDMWGDMENGTPN
                     LAGKTVANLGLSGTSTRQYLDVITRQERIQHVGDNVFIFLGVNDIVKEPDYSPKQVLE
                     WIGEIVDSLRKINPNANFFLLEATPVNNITTTNNAAIKELNAYFEANIPSDLTYVKTW
                     EYFADKEGNLDLTLCHDGLHFTQAGYDRLEAILTKHL"
     gene            complement(4245..5699)
                     /gene="gnd"
                     /locus_tag="PXE26_001107"
     CDS             complement(4245..5699)
                     /gene="gnd"
                     /locus_tag="PXE26_001107"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating NADP(+)-dependent
                     phosphogluconate dehydrogenase"
                     /protein_id="HDL5593701.1"
                     /translation="MSQKGDIGVIGLAVMGQNLILNMNDNGFKVVAYNRTTSKVDEFL
                     EGAAKGTNIIGAYSLEDLAAKLEKPRKVMLMVRAGEVVDQFIEALLPHLEEGDIIIDG
                     GNSNYPDTNRRVKALAEKGIRFIGSGVSGGEEGARHGPSIMPGGDESAWQYVKPIFQA
                     ISAKTDKGEPCCDWVGRDGAGHFVKMVHNGIEYGDMQLICEAYQFLKDGLGLSYDEMH
                     EIFKEWKNTELDSYLVDITTDILAYKDEDGEPLVEKILDTAGQKGTGKWTGINALDFG
                     IPLTLITESVFARCVSAFKDQRVAASRLFNKEIGKVEGDKKVWVEAVRRALLASKIIS
                     YAQGFMLIREASEQFGWDINYGNTALLWREGCIIRSRFLGNIRDAYEANPYLVFLGSD
                     PYFKDILENCLADWRKVVAKSVEIGLPVPCMASAITFLDGYTSARLPANLLQAQRDYF
                     GAHTYERTDKARGEFFHTNWTGRGGNTASTTYDV"
     gene            complement(5782..6471)
                     /locus_tag="PXE26_001108"
     CDS             complement(5782..6471)
                     /locus_tag="PXE26_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HDL5593702.1"
                     /translation="MKTLGILGGMSAESTVSYYLDINRSVNKVLGGNSSAKILISSVN
                     FEEIVQCQKQGNWQAAAEILSEQARLLEQAGAEGILLATNTMHKIADQISSHISVPFL
                     HILDCVAEAISAQGLQKVALLGTKFTMSDNFYKDGLLERGITSIVPDEETQQEIHRII
                     FEELCLGKITESAKAFYLQTIQQLSEQGAEGVILGCTEIGLLINQNDNPLPFFDTAAL
                     HSQMAVEFILG"
     gene            complement(6481..7368)
                     /locus_tag="PXE26_001109"
     CDS             complement(6481..7368)
                     /locus_tag="PXE26_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6N domain-containing protein"
                     /protein_id="HDL5593703.1"
                     /translation="MNPIQLIEPNINSKIFTIRGEQVMLDVHLAELYQVDTRTFNQAV
                     KRNEERFPDIFRFQLTENEWLSLRSQFVILNENSGRGQHRKYLPYVFTEQGIAMLSAV
                     LRSEVAVQVSIKIMQAFVQMRHLLQTNSGLVQRLESVERKQLEMSGQLEQVFQSLEGN
                     KPKMQGVFFEGETFNAYQFVTELVRGAKSSLILIDNYVDDTVLTLFTKRSHNVSVTIY
                     TKQISKQLALDLEKYNSQYAHINVKIFDKSHERFLIIDEKELYHIGASLKDLGKKWFA
                     FSKMDLSMSRILEKLAENQ"
     gene            complement(7544..8242)
                     /gene="pgl"
                     /locus_tag="PXE26_001110"
     CDS             complement(7544..8242)
                     /gene="pgl"
                     /locus_tag="PXE26_001110"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HDL5593704.1"
                     /translation="MNKVIFPTAQAAVEQIAKEFIEYSHQNRPVHISLSGGSTPKLLF
                     KTLAQAPFNTEIQWQNLHFWWGDDRMVAPTDPESNYGEVQKLLFDHIDIPSENIHRIR
                     GEENVEQELARFSAELTACVPNLAFDWIILGMGTDGHTASLFPHQTDFNDQNVAVIAK
                     YPETGQIRISKTASLIEKAKRITYLVTGASKAEILKEIQTTPAENLPYPAAKIQAENG
                     VTEWYLDSEAANLL"
     gene            complement(8382..9869)
                     /locus_tag="PXE26_001111"
     CDS             complement(8382..9869)
                     /locus_tag="PXE26_001111"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HDL5593705.1"
                     /translation="MNAENSCIVIFGASGDLTFRKLIPALYNLYKIGRLGEHFSVLGV
                     SRSELTDESFRQKMRDALVKFEKASGEELDKFCEHLYYQAVNTSDAVDYAKLLPRLDE
                     LHDKYQTAGNTLYYLSTPPSLYGVIPECLAAHGLTTEEFGWKRIIVEKPFGYDIETAK
                     KLDVQIHKCFEEHQIYRIDHYLGKETVQNLLVLRFSNGLFEPLWNRNFIDYVEITGAE
                     SIGVEDRGGYYDGSGAMRDMFQNHLLQVLAMVAMEPPAIINANSMRDEVAKVLYCLHP
                     LTEEDVKHNVVLGQYARGTVDGKEVPAYLEEKGVPADSNTETFMAVKCKIDNWRWAGV
                     PFYVRTGKRLPTRVTEIVIHFKTTPHPVFSQNAPENKLIIRVQPDEGISMRFGLKKPG
                     AGFEAKEVSMDFRYSDLSSSSSLLTAYERLLLDALKGDATLFARTDAVHACWKFVQPI
                     LAYKANRGRVYEYESGTWGPTEADKLIARHGKVWRKPSGTMKKKV"
     gene            complement(9944..10762)
                     /gene="cysQ"
                     /locus_tag="PXE26_001112"
     CDS             complement(9944..10762)
                     /gene="cysQ"
                     /locus_tag="PXE26_001112"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HDL5593706.1"
                     /translation="MQTLTQPLLENIINIAKAAGEQLKQLYARSVAIKIKADCTPVTE
                     ADLIISQFLTERLKQLTPDIPVLSEEFCDIPFAERQQWQEYWIIDPIDGTQQFINRTG
                     QFSVVIALVQKREGRNQPVLGVIHAPILGKTYFSMEGSGSFLQENGEIRPLVKPKRAE
                     NALLIVTVGSDLHAEQAKNAISAPQIECVKYGSGSLKAGLVAEGKADCYIRFGDTGEW
                     DTAVAEVLLSEMGGKIFDFNFSPLTYNQRESLINPYFVMVADGSIDWDKIFLFK"
     gene            complement(10776..11318)
                     /gene="nudE"
                     /locus_tag="PXE26_001113"
     CDS             complement(10776..11318)
                     /gene="nudE"
                     /locus_tag="PXE26_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP compounds hydrolase NudE"
                     /protein_id="HDL5593707.1"
                     /translation="MIKQLPEILNIKTVAKSRIFEVQAVDLRFSNGEERTYERLTPNR
                     RSSVMVIPIQNNELIFVKEYAVGSERYELGFPKGIVDAGEEPIESANRELQEEIGFGA
                     KKLDFLRSLYSSPSHMYGLMHLFLAQDLYPSKLEGDEPEPLEIVRYPLDKIDQLLADP
                     DFAEARNLSALFMLREYLKK"
     gene            11406..11822
                     /gene="hslR"
                     /locus_tag="PXE26_001114"
     CDS             11406..11822
                     /gene="hslR"
                     /locus_tag="PXE26_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated heat shock protein Hsp15"
                     /protein_id="HDL5593708.1"
                     /translation="MKNKHEKEQNDAEVRLDKWLWAARFYKTRSIAKAMIEGGKVHYN
                     GQRAKVSKAVEIGAIIKLRQGNEEKEVEVLALSDQRRGAPEAQLLYSETEKSIKHREA
                     MAFARKANALSMPHPDRRPNKKERRDLIKFKEQEFS"
     gene            12066..12959
                     /gene="hslO"
                     /locus_tag="PXE26_001115"
     CDS             12066..12959
                     /gene="hslO"
                     /locus_tag="PXE26_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HDL5593709.1"
                     /translation="MNYTKDNDKLYRYLFKDRAVRGEWVRLNNTFTETLNTHHYPKAV
                     QNLLGEMLVATSLLTATMKFNGNITVQIQGDSPLKLAVVNGNDQQQLRALARVQADIA
                     DTASLAEMIGNGVLVISIIPTDGERYQGVIALDKPTIRECLEDYFARSEQLQTHLVIR
                     TGEFEGKAVAGGMLLQIMPDGTGSRDDFEHLATLTETVKDEELFGLEAEELLYRLYHE
                     EQVEVYPPQDTEFKCGCSRERSGSALLLVPAEEIEEMLEEKQGVIDMQCECCGTQYFF
                     DKAAIEGFKEETEKLSKLGLN"
     gene            complement(13033..13671)
                     /locus_tag="PXE26_001116"
     CDS             complement(13033..13671)
                     /locus_tag="PXE26_001116"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HDL5593710.1"
                     /translation="MQNKIDWQKVDGLLPVIVQNAQTCEVLMLGYMNQQALEKTLAEK
                     RVTFYSRTKQRLWTKGETSGNFLNVVDMSLDCDNDTLLILANPIGETCHTGAESCFHQ
                     FEQEQPDWIFFSKLERMIAERKNADPESSYTAKLYAKGTPKIVQKVGEEAVESVIAAM
                     KNDREELVGEVADLMYHLTVLLHNADLSWAEINAKLKERHKGIGLHPEGSNK"
     gene            complement(13699..14085)
                     /locus_tag="PXE26_001117"
     CDS             complement(13699..14085)
                     /locus_tag="PXE26_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL5593711.1"
                     /translation="MIKITALDHLVLTVADMQKTIDFYTTILGMQEITFGDNRKALLF
                     GTQKINLHQKGAEILPNAQNADCGTADLCLLTVTPLQEVIYVLQRHQVEILEGGIVPR
                     TGAVGKIESVYCRDPDGNLIEISLYV"
     gene            complement(14082..14855)
                     /gene="hisF"
                     /locus_tag="PXE26_001118"
     CDS             complement(14082..14855)
                     /gene="hisF"
                     /locus_tag="PXE26_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDL5593712.1"
                     /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAQRYAQEGA
                     DELVFYDITASSDSRTVDKSWVERVAQVIDIPFCVAGGIKTIADAEQIFAFGADKISI
                     NSPALANPELITELAKRFGVQAVVVGIDSWFEAETGKYWVNQYTGDEKRTRQTEWQLL
                     DWVEEVQKRGAGEIVLNMMNQDGVRNGYDLVQLKKVREVCQVPLIASGGAGEMVHFRD
                     AFIEANVDGALAASVFHKQIINIGELKEYLAKEGVEVRR"
     gene            complement(14837..15586)
                     /gene="hisA"
                     /locus_tag="PXE26_001119"
     CDS             complement(14837..15586)
                     /gene="hisA"
                     /locus_tag="PXE26_001119"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006995165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HDL5593713.1"
                     /translation="MQKSIIIPALDLIDGQVVRLHQGDYAKQTTYADDPIAQFADYLA
                     QGAEQLHLVDLTGAKNPAQRQTALIGKIIRETHCKIQVGGGIRTEQDVADLLAVGANR
                     VVIGSTAVKEREMVKGWFKKYGAEKFVLALDVNIDAIGQKIIAMSGWQEASGVSLEEL
                     IEDYQTVGLQHVLCTDISRDGTLAGSNVDLYREICAKYPEIQFQSSGGIGSLADIKAL
                     CGTGVAGVIVGRALLEGKFNVAEAIECWQNG"
     gene            complement(15756..16601)
                     /locus_tag="PXE26_001120"
     CDS             complement(15756..16601)
                     /locus_tag="PXE26_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor protein"
                     /protein_id="HDL5593714.1"
                     /translation="MNEIKLFENSQIRSVWDSEKEEWFFSVVDIIEVLTQSSNPRRYW
                     SDLKRKIKDEEGGIELYEKIVQLKLKAPDGKMRETDATDLQGIFRIIQSVPSPKAEPL
                     KMWLAEVGKERIDEIIDPELTIDRALATYLKKGYSREWINQRLQAIQVRKELTDTWQD
                     HGVQVGREFAILTNEITQAWSGMTTRQYKDFKGLKKESLRDNMTTTELVLNMLAEAAT
                     KDIAQISHPQGLEENKTVAKRGGNVAKVARESLEAETGKPVITQQNAIDFAAVIEQVA
                     KQVKK"
     gene            complement(16700..17293)
                     /gene="hisH"
                     /locus_tag="PXE26_001121"
     CDS             complement(16700..17293)
                     /gene="hisH"
                     /locus_tag="PXE26_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDL5593715.1"
                     /translation="MTNLTIIDTGCANLSSVKFAFDRLGIRAEISRDLNKIQSADKLL
                     LPGVGTAAAAMAILHDRRLIDTIRNATQPMLGICLGMQLMTDFSHEGDVATLNLMSGK
                     TERLPECGLPLPHMGWNKVQYQADHPLFHDIEQGNHFYFVHSYGVLPNENTIATCDYG
                     VPFSAAIASQNFYGVQFHPERSGEAGAKLLRNFVENV"
BASE COUNT         4868 a         4014 c         3610 g         4961 t
ORIGIN      
        1 aattacatta tcgactataa attattgaac atacctgaag agcaaccaaa tgttatcatt
       61 gaatttatgg ttaataaaga tgacaattcg attttagggg aaatgacttc aacagctctg
      121 tgtgagttaa tacctctaac ttggagtttt agattggaaa gccctaagcc aacattatta
      181 aatcttattt tcgatagaga gttgaaattg agttatcttg ttagtggggg atataccgag
      241 ctatcaacat ttaaaattaa agaaattaac agtaatctag gaacactaac attaactacg
      301 caagaagata aaaccggtat atttcctccg acaatcaaat taatcaattt ttcatccaat
      361 atagaagatg atattaaaga gattgagcaa agctgtttaa atagccgaaa gcaattatgg
      421 gaaaaacgaa gaaaaatgca agaggaacaa aaaattccca attaatcttt tagttgacct
      481 taatttaaat aactaattac ctataaaagc atttacggca aagatctttt ttataagatt
      541 aagctagtga aaaaattatt aaacaagaga aaacaaaacc aatgacaaaa caattcacaa
      601 tggaagaccg ttttaaccct tccgctgtag agcaagcgct ctaccaacac tgggaatcgc
      661 aaggctattt taagccgagt gaagatatta atgcaccgag ctactgtatc gctattccgc
      721 cgccgaatgt gacggggagt ttgcatatgg ggcacgcttt ccagcaaacc ttgatggata
      781 cgctgattcg ttttaaccgt atggagggca acaataccct ttggcaaaca ggaactgacc
      841 acgcagggat tgccactcag atggtggtgg agcgtaaaat cgcagcggaa gaaggtaaaa
      901 cccgccacga ttatgggcgt gaagccttta tcaacaaaat ctgggattgg aaagcctatt
      961 cgggcggcac gatcagccag caaatgcgtc gcttaggcaa ctcgattgac tgggatcgtg
     1021 agcgttttac gatggacgaa ggcttatcca atgcggtaaa agaggtgttc gttcgcttgc
     1081 acgaagaagg cttgatttac cgtggcaaac gcctcgtaaa ctgggatccg aaactgcata
     1141 ctgcgatttc tgacttggaa gtggaaaaca aagaaagcaa aggctcgctg tggcatttcc
     1201 gctatccgct ggctaatggt gcaaaaaccg cagacggctt ggattactta gtggtggcaa
     1261 cgacccgtcc tgaaacgatg ttgggcgata ctgcggtggc ggttcaccct gaagatgagc
     1321 gttatcaagc tctgattggc aaaagcgtaa tcctaccgct tgccaaccgt gaaatcccga
     1381 ttattgccga tgagtatgtg gatcgtgagt tcggtacggg cgtggtaaaa atcacccctg
     1441 cccacgattt caacgactac gaagtgggca aacgccacgg cttgccgatg gtgaatgtga
     1501 tgaccttaaa tgccgatatt cgtgcagagg ccgaaattat cggcacagac ggtaaaccgc
     1561 tttccgacta caccgcccca attcctgccg actatcaagg cttagagcgt tttgccgcgc
     1621 gtaagaaaat tgtggcagat tttgaagctc ttgggctgtt agatcaaatc aaaccacacg
     1681 acttaaaagt gccgtatggc gaccgtggtg gcgtgccgat tgagccgatg ctgaccgacc
     1741 aatggtatgt gtctgtcaaa cctttggcgg aagtcgcgac caaagcggtg gaagacggcg
     1801 aaatccaatt cgtgccgaaa cagtacgaaa acctgtattt ctcttggatg cgtgatattc
     1861 aagactggtg tatctctcgc caattatggt ggggacaccg cattccagcg tggtatgacg
     1921 agcagggcaa tgtttatgta gcacgagatg aagcggaagt gcgtgcgaaa cacaacttac
     1981 ctgcggactt accattaaag caagatgaag acgtactgga tacttggttc tcgtctggtc
     2041 tatggacgtt ctcaacgtta ggctggccag aacaaaccaa agaactgaaa atgttccacc
     2101 cgaccgatgt gctgattacc ggttttgaca tcatcttctt ctgggtggct cgtatgatta
     2161 tgttcacgat gcacttcatc aaagatgaaa acggcaaacc gcaagtgccg ttcaaaaccg
     2221 tgtatgtaac aggcttgatc cgtgacgagc aagggcagaa aatgtcgaaa tcgaaaggga
     2281 acgtgttaga cccgattgat atgattgacg gcatcagtct cgacgatttg ctcgaaaaac
     2341 gtacaggtaa tatgatgcag ccacaactgg cagaaaaaat cgctaaggca acccgcaaag
     2401 aatttgccga agggattgtg gcacacggca cagacgctct gcgtttcacc ctcaccgccc
     2461 ttgccagcaa cggtcgagac atcaactggg atatgaaacg tttagaaggc taccgcaact
     2521 tctgcaacaa actgtggaat gcgagccgtt atgtgctgac caatgacaag ttggatttaa
     2581 gcgaaggcga cgtggaattt agccttgccg atcgttggat tgaaagccaa ttcaaccgca
     2641 cggtggaaac tttccgcacc gcactcagcc aataccgttt cgacttagtg gcaaatgcga
     2701 tctacgaatt tacttgggat caattctgcg actggtattt agagctgacc aaacctattt
     2761 tcttcaaagg cacagatgta caacgccgtg gcgcaagtcg cacgctggtg aatgtattgg
     2821 aaaaactcct gcgtttaatc cacccagtaa tgccgttcat caccgaagaa atctggcaga
     2881 aagtgaaagg ctttgtaggt attgaagccg ataccattat gttgcaaaaa ttcccacaat
     2941 ttgacccgct tgccattgat gaaaccgccg aaagtcaaat caactttatc aaagaagtga
     3001 ttgtggcggt gcgtaacatt cgtgcggaaa gcaacatcgc accaagcaaa ggtttagatt
     3061 taatcgctcg taatttctct gcggacgaag tctctattct caacgctaac gaagtgttgc
     3121 tcaaatcgat ggcaaaactt gatagcgtga aagtgctgga aaatggtgaa aatgcaccgc
     3181 tatcggtagc gaaactggtc gcaaatggtg agatcttgat cccaatggca ggctttatca
     3241 acaaagaagc tgagctagct cgcctcacca aagagatgga taaacttaaa ggtgaagtgg
     3301 ctcgcattga aggcaaactt tcaaacgaag cctttgtcgc caaagcccca gagcaagtca
     3361 tcgccaaaga gcgtgaaaaa atgcaagagt acctgagtgg attagagaaa ttgcaggtgc
     3421 agtatcaaga gattgaagca ctgtaattaa ctaacaagcg gtcaggattt ggaaattttt
     3481 tgctaattca gaccgcttgc ttattgaagc ttttcattat aaatgtttgg ttaaaatcgc
     3541 ctctaggcgg tcatagcctg cttgggtgaa gtgtaatcca tcgtggcata aagttagatc
     3601 taaattccct tctttgtcag caaaatattc ccacgttttt acataagtca aatcagatgg
     3661 aatatttgcc tcaaaatacg cattgagctc ttttattgca gcattattgg tggtggtaat
     3721 attattaacc ggtgtggctt ccaatagaaa aaagttggca tttggattaa ttttgcgaag
     3781 agaatccaca atttcgccaa tccactctaa cacttgtttt ggcgagtaat ccggctcttt
     3841 tacaatgtca ttaacgccta gaaaaataaa tacattatcg ccaacgtgtt gaattcgctc
     3901 ttgtcgggta atcacatcca aatattggcg ggtgctggtg cctgataagc ccaaattggc
     3961 aactgttttt cctgctaaat tcggcgtgcc gttttccata tcgccccaca tatcaaacag
     4021 ggaatgccca ataagggaaa tatctgcctg tttttcaaat tctgattttt ttgtttggta
     4081 gcgattaaaa atatcttgat cggtaagcat aggttctcct taaatataaa tgaaaaatcg
     4141 ctccattatt atacaaactt gtaaacattc actccaagat attttgaaga aaaatccaat
     4201 aaaaaagcca cttaatatcg aattaagtgg ctcaaaaaga ttaattacac atcataagtg
     4261 gtcgatgcgg tattaccgcc acgtcctgtc cagttggtgt ggaagaactc accgcgagct
     4321 ttgtctgtac gctcataagt atgagcacca aagtagtcac gttgtgcttg gagtaagttt
     4381 gccggtaaac gtgccgaggt gtagccatct aagaaggtaa tggctgacgc catacaaggt
     4441 acaggtaaac cgatttccac cgattttgcc actactttac gccaatctgc caagcagttt
     4501 tccaaaatat ctttgaagta tgggtctgag cctaagaaca ctaaatatgg gttggcttca
     4561 tacgcatcac gaatgttgcc taagaaacgg ctgcggataa tacaaccttc acgccataat
     4621 agggcggtat tgccgtagtt gatgtcccaa ccgaattgct cagaagcctc acgaatcaac
     4681 ataaagcctt gtgcataaga gatgattttg gaagcaagta acgcacggcg taccgcttct
     4741 acccatactt ttttgtcgcc ttcaacttta ccaatttctt tgttaaacaa tcttgaagcc
     4801 gcaacacgtt gatctttaaa cgcagatacg caacgggcga ataccgactc ggtaatcagt
     4861 gttaatggaa tgccgaaatc aagggcgtta ataccagtcc atttacccgt tcctttttga
     4921 cctgcggtgt cgagaatttt ctctaccaat ggctcgccgt cttcgtcttt gtaggcaaga
     4981 atatcagtgg taatatccac caaatagctg tctaattcgg tgtttttcca ctctttaaag
     5041 atttcgtgca tttcatcata gcttaaacct aaaccatctt ttaagaattg gtaggcttca
     5101 caaattaact gcatatcgcc atattcgata ccgttgtgaa ccattttcac aaaatgccct
     5161 gctccgtcac gaccaaccca gtcacaacaa ggctcacctt tgtcggtttt ggctgaaatt
     5221 gcttggaaaa tcggcttcac atattgccac gcagattcat caccgcccgg cataattgac
     5281 ggcccgtgac gagcaccctc ttcgccgccc gatacacctg agccgataaa gcgaatgcct
     5341 ttttccgcta acgctttcac acggcggttg gtgtccggat agtttgagtt accgccatca
     5401 atgatgatgt cgccttcttc taaatgtggc agaagagcct cgataaactg atccaccacc
     5461 tcaccggcac gcaccattag catcacttta cgcggttttt ccaacttcgc cgctaaatct
     5521 tctaacgagt aagcaccgat aatgttcgtg cctttcgccg caccttctaa gaactcatcc
     5581 acttttgaag tagtgcggtt gtacgccacc actttaaagc cgttgtcatt catattcaaa
     5641 attaaatttt gacccattac ggcgagtcca atcacgccga tatcgccttt ttgtgacatt
     5701 gtttgctcct attgtttttg attctatgca agcggtcgaa ttggtaaaat tttttgcaaa
     5761 tttgaccgct tgtaacattt attaacctaa aataaactcc accgccattt ggctgtgtaa
     5821 tgctgctgta tcgaaaaacg gtaacggatt gtcgttttgg ttaatcagca acccgatttc
     5881 ggtacaacct aaaatcacac cttctgcacc ttgttcacta agttgttgaa tagtctgaag
     5941 ataaaacgct ttggcacttt cagtaatctt gcctaaacag agttcctcga aaataatgcg
     6001 atgaatttct tgttgcgttt cctcatctgg tactattgat gtgataccac gctccaataa
     6061 accgtctttg taaaaattat cactcatagt aaattttgtg ccaaggagtg ctactttctg
     6121 cagaccttga gctgaaatcg cctcagccac acagtccaaa atatgcaaaa acggcacaga
     6181 gatatggcta ctaatttgat cggcaatttt gtgcattgtg ttggttgcca ataaaatgcc
     6241 ttctgctccg gcttgttcta gcaatctagc ttgttcagat aaaatttcag cggctgcttg
     6301 ccaatttccc tgcttttggc attgtacaat ctcttcaaaa ttgacactcg aaattaaaat
     6361 cttggcactg ctatttccac ctaatacttt attcaccgag cgattaatat ctaaataata
     6421 agaaaccgtg ctttccgcac tcattccacc taaaatgccg agtgttttca ttaatatacc
     6481 ttattgattt tccgctaact tttctaaaat gcggctcatt gataaatcca ttttagaaaa
     6541 agcgaaccat ttcttaccta aatctttaag tgatgcaccg atatgataaa gctctttttc
     6601 atcaataatc aaaaatcgct cgtgagattt atcaaatatt ttcacattaa tgtgagcata
     6661 ttggctgtta tatttttcca aatctaatgc aagttgctta gatatttgtt tcgtataaat
     6721 cgtaactgat acgttatgcg atcgtttcgt aaataaagtt aaaacggtat catctacata
     6781 gttatcaatt aaaatcagcg atgattttgc acctctcact aattccgtaa caaactgata
     6841 agcgttaaag gtttcacctt caaagaaaac cccttgcatt ttaggcttat tgccttcaag
     6901 agattgaaac acctgctcta actgcccaga catctccaac tgtttacgct ctacactttc
     6961 taagcgttgt accaaaccac tatttgtttg caaaagatga cgcatttgca caaaggcttg
     7021 cataatctta atgctaactt gcaccgcaac ttcactacgc aatactgccg aaagcattgc
     7081 aatgccttgc tcggtaaaga cataaggaag atatttccta tgttggccac gcccactatt
     7141 ttcgtttaag atcacaaatt gtgatcttaa agatagccat tcgttttctg ttaattgaaa
     7201 acgaaatatg tcaggaaatc gctcttcatt ccgttttact gcttggttaa aggttcgagt
     7261 atctacctga taaagctctg ccaaatgaac atctagcatt acttgctcgc cacgaatagt
     7321 aaaaatttta gagttaatgt ttggttcaat taattgaatt ggattcatct ttcttcctta
     7381 ttcttcagtg aagatcactt ttgtgatctc aaaataagaa agactatgcc aatttttggc
     7441 ctataccacg agcagatttt tctgcttttt cgatgaatat cacaaaaata ctttgcaaca
     7501 tttttctaaa atttaaccgc ttgtaaaggt cactgattgt gacctagagt aagttagccg
     7561 cctcactatc caaataccat tccgttaccc cattttccgc ctgaattttg gcggcaggat
     7621 aaggtaaatt ttctgccgga gtggtttgga tttcttttaa aatttccgct ttgcttgctc
     7681 ctgtgaccaa gtaagtgatc cgtttggctt tttcaattaa agatgccgtt ttggaaatgc
     7741 ggatctgccc tgtttctggg tatttggcga tcacggcaac gttctgatca ttaaaatctg
     7801 tttgatgtgg gaacagtgag gcggtatgcc cgtctgttcc cattcctaaa ataatccaat
     7861 caaacgccaa gttcggcaca caagcggtca attctgccga aaatcttgca agttcttgtt
     7921 ctacattctc ttcaccacga atgcggtgaa tattttcgct tggaatgtcg atgtgatcga
     7981 acagtaattt ctgcacttcg ccgtagttac tttcgggatc ggttggggca accattcgat
     8041 catcccccca ccagaaatgc aggttttgcc attgaatttc ggtattaaac ggtgcttgag
     8101 ctaaggtttt gaataataat ttgggggttg aaccaccgga aagggaaata tgcaccgggc
     8161 ggttttgatg gctgtattca ataaactctt tagcaatttg ttcaaccgca gcttgggcgg
     8221 tggggaaaat aactttattc ataatttgcc tcgttagatc acccctcttt agaaaagagg
     8281 ggagggggag atttgattac gatttcaata tttcgtatga gcgtatataa cttctgccaa
     8341 atctccccta gcccctcttt gctaaagagg ggaactgaaa tttacacttt cttcttcatt
     8401 gtaccggacg gttttcgcca tactttgccg tgtctggcga ttaatttatc tgcctcggtt
     8461 ggcccccaag tgccggattc atattcatac acacgcccac gattagcttt gtaggctaaa
     8521 atcggttgca caaatttcca acaagcgtgt acagcatcag tacgggcaaa taaggttgca
     8581 tcacctttaa gtgcgtctaa tagtaagcgt tcataagcgg tgagtaagct tgatgatgaa
     8641 cttaaatcag aatagcggaa atccattgag acttctttcg cttcaaagcc tgctcccggt
     8701 tttttcaagc cgaaacgcat tgaaatgcct tcgtccggtt gcacacgaat aatcaattta
     8761 ttttccggag cattttggct aaataccggg tgtggtgtag ttttaaaatg aattacgatt
     8821 tccgtcacac gggttggtaa gcgtttaccg gttcgcacat agaacggcac acctgcccaa
     8881 cgccagttat cgattttaca ttttaccgcc ataaaggttt cagtgttgga atcagccggc
     8941 acgccttttt cttccaagta agccggcact tctttgccgt ctaccgtgcc acgagcatac
     9001 tgacctaaca ccacattgtg tttaacgtct tcttcagtta acggatgcaa gcaatatagc
     9061 acttttgcga cttcatcacg cattgaatta gcattaataa ttgccggtgg ctccattgca
     9121 accatggcta atacttgcaa taagtggttt tggaacatat cacgcattgc ccccgagcca
     9181 tcatagtaac cgccacgatc ttcaacgccg atggattctg ccccggtaat ttccacataa
     9241 tcaataaaat tacggttcca aagcggttca aataagccgt tagaaaaacg taaaacgagt
     9301 aagttttgta ccgtttcttt acctaaatag tggtcgatac ggtagatttg atgctcttca
     9361 aagcatttgt ggatttgtac gtctaatttt ttggcggttt cgatatcgta gccgaatggt
     9421 ttttcaacaa taatccgttt ccagccaaac tcttcggtag ttaagccgtg agcggctaaa
     9481 cattccggaa tcacgccata taaacttggt ggcgtggaga ggtaataaag cgtgttaccg
     9541 gctgtttgat atttatcgtg tagctcatca agacgaggca gcaacttggc ataatccact
     9601 gcatcagagg tatttacagc ttggtaataa agatgttcgc aaaatttatc taattcttca
     9661 ccgcttgctt tttcaaattt gactaacgca tcacgcattt tttggcggaa agattcgtcg
     9721 gttaattctg aacgagaaac acctaggacg gaaaaatgct cgcccaatct gccaatctta
     9781 tataagttat aaagagcagg aattaattta cgaaaagtta agtcaccgga agcaccaaaa
     9841 atgacgatac agctattttc agcattcatt tatttatcct attgctaatt gttaaaattt
     9901 tgttgggtgc aagattatca taaaaattgc taatcggaac tacctatttg aataaaaata
     9961 ttttatccca atctatcgag ccgtcagcca ccatcacaaa ataaggatta atcaaacttt
    10021 ctcgctgatt ataagtcagc ggcgaaaaat taaagtcgaa aattttgccg cccatttcac
    10081 ttaacagcac ttctgccaca gcagtatccc attcgccggt gtcaccaaaa cggatataac
    10141 aatcggcttt cccttctgcc actaaaccgg cttttagact gcccgaacca tattttacac
    10201 actcaatttg tggggctgaa atggcatttt tagcttgttc tgcatgtaaa tcgctgccta
    10261 cggtaacaat caaaagggca ttctccgcac gtttcggttt gacaagcggt cgaatttctc
    10321 cattttcttg caaaaagcta ccgctacctt ccatactaaa ataggttttt cctaatatcg
    10381 gagcatgaat aacgcccagc accggctgat ttctaccctc acgtttttgc actaacgcaa
    10441 tcaccactga aaattgaccg gtgcggttaa taaactgttg tgtgccgtca atcgggtcga
    10501 taatccaata ttcttgccat tgttggcgtt cggcaaacgg aatatcgcaa aactcttccg
    10561 ataataccgg aatatctggt gtgagttgct tcaagcgttc agttaaaaat tggctgataa
    10621 tcagatccgc ttccgtcacc ggtgtgcaat cggctttgat tttaattgcc accgagcggg
    10681 cataaagctg ctttaactgc tcaccggctg ctttggcaat attgataata ttctcgagta
    10741 ggggttgagt tagcgtttgc ataatagctc cttgcctatt tttttaagta ttctcgtagc
    10801 ataaatagag cggacaaatt ccgtgcttcg gcaaaatcag gatctgccaa taattgatca
    10861 attttatcca acggataacg cacaatttcc agcggttcag gctcatcgcc ttccaatttt
    10921 gatgggtaca gatcttgtgc caaaaacagg tgcattaagc cgtacatatg gcttggcgaa
    10981 ctgtaaagcg accgcagaaa atctaatttt ttcgccccaa aaccaatttc ttcttgtaat
    11041 tcacggttcg cactctcaat cggctcttca cctgcatcca caatgccttt cggaaaaccc
    11101 agctcgtaac gctccgagcc gaccgcatac tctttcacaa aaatcagctc gttgttttga
    11161 atcggaatca ccattaccga agaacggcga ttcggcgtaa gtcgttcgta agttcgctct
    11221 tcgccattag aaaagcgtaa atcgaccgct tgcacctcaa aaatgcgaga tttcgctact
    11281 gttttaatgt tcaaaatttc aggaagttgt tttatcattt tatctcacct ttttgagtta
    11341 ttttagttga aaaatctcac tttcgctcta atatttcgac tattgttttg attttaaggc
    11401 agaaaatgaa aaataaacac gaaaaagaac aaaacgacgc cgaagttcgg ctagataaat
    11461 ggctttgggc ggctcgtttt tataaaaccc gttcgattgc caaagcaatg attgaagggg
    11521 gtaaagtcca ttataatggg caaagagcta aagttagcaa agcggtggag atcggtgcca
    11581 tcatcaaact tcgccaaggc aatgaagaaa aagaggtgga agtgttagcc ctcagtgacc
    11641 aacgccgagg ggctccggaa gcccaactgc tctacagtga aaccgaaaaa agcattaaac
    11701 accgtgaggc aatggcattt gcccgcaaag cgaatgctct ttcaatgcca caccctgatc
    11761 gccgtccaaa caaaaaagaa cggcgggatt taatcaaatt caaagagcaa gaatttagct
    11821 aagcccttgc aatcagaaaa ataatcccta tattgaatat cctaagtagg ggcgaaaaat
    11881 ttttcgcccc tatataatta tttcgggcga acattgattc gcccctacag cgttcgattt
    11941 gcacattttt agccacaaaa tgcaatgcat tttgaacgtt ggctttgcca acggctccgt
    12001 aggagcgaac aaaattagaa ataattttgt gagtaataat cgaccgcttg caacgaggaa
    12061 tcaaaatgaa ttacaccaaa gacaatgaca aactctaccg ctatttattc aaagaccgag
    12121 cggtacgggg cgaatgggtg cgtttaaaca acacctttac cgagacctta aacacccatc
    12181 actaccctaa agcagtacaa aatttactcg gagaaatgtt agtcgcaacc agtttgctga
    12241 ctgcaacaat gaaatttaac ggcaacatta ctgtgcagat tcaaggtgac agcccgttaa
    12301 aattggcggt tgtgaacggt aacgaccaac agcaactccg tgctttagcc cgtgttcagg
    12361 cagatattgc agacacagcc tcgttagcgg aaatgatcgg caatggtgta ttagtgattt
    12421 ctattatccc aaccgatggt gaacgttatc aaggggtgat tgctctcgat aaaccaacca
    12481 ttcgtgaatg tttagaagat tacttcgccc gctccgagca attacaaacc cacctcgtta
    12541 tccgcacagg cgaatttgaa ggcaaagcag tggcaggcgg tatgttgcta caaattatgc
    12601 cggacggcac aggctcaaga gatgattttg agcatttagc cacgctcact gaaaccgtaa
    12661 aagatgaaga gttatttggt ttagaggcag aagaattgct ctatcgcctc taccacgaag
    12721 agcaagtaga agtttaccca ccacaagata ctgaatttaa atgtggctgc tcaagagagc
    12781 gttcaggctc cgcattatta ctggtgccgg cagaagaaat cgaagaaatg ttggaggaaa
    12841 aacaaggcgt gatcgatatg caatgtgaat gctgcgggac acaatatttc tttgacaaag
    12901 cggcgattga aggctttaag gaagaaactg aaaaattaag taagttaggg ttaaattaag
    12961 ctaaacaagc ggtcaagttt cttgtctttt ttgcaatttg taaaaaaacg gtgaaatttg
    13021 accgcttgca ttttacttat ttgagccttc tgggtgtaac ccaatccctt tgtggcgttc
    13081 ttttagttta gcattgatct ctgcccacga gagatcggca ttgtgcaata acaccgttaa
    13141 gtgatacatc agatcagcca cttcaccgac caactcttcc cgatcatttt tcattgccgc
    13201 aatcacgctt tctactgcct cttcccctac tttttggacg atttttggcg tgcctttggc
    13261 gtaaagttta gcggtataag aactttccgg atcagcattt ttacgttcgg ctatcattcg
    13321 ttctaatttg ctgaaaaaga tccaatctgg ttgttcttgt tcaaactgat gaaaacagct
    13381 ctccgccccc gtatggcagg tttcgccgat agggttagcg aggattaaca gggtgtcgtt
    13441 atcacaatcc aaactcatat ccaccacgtt taggaaattg cccgaggttt cgcctttcgt
    13501 ccacagccgt tgtttagtac gggagtaaaa agtcactcgc ttttcagcca gcgttttttc
    13561 gagggcttgt tggttcatat atcctaacat cagtacttcg caggtttggg cgttttggac
    13621 gataacgggc agtaagccgt ccactttttg ccagtctatt ttattttgca ttttttcttc
    13681 ctttttttga ccgcttgttt agacatatag gcttatttca atcaaattac catcagggtc
    13741 acggcaataa accgactcaa tttttcccac tgcccccgta cgaggcacaa tcccaccttc
    13801 caaaatctcc acctgatgtc gctgtaacac atagataacc tcctgaagtg gagttaccgt
    13861 taagaggcat aaatctgccg tgccacaatc ggcattttgg gcattgggta ggatttctgc
    13921 acctttttgg tggaggttga ttttctgtgt gccaaacaaa agcgctttgc gattatcgcc
    13981 aaaggtgatt tcttgcatac ccaaaatggt cgtataaaaa tcaatggttt tttgcatatc
    14041 ggcaacggtt aaaaccagat gatctaaggc agtaatctta atcatctacg cacctcaacc
    14101 ccttccttcg ccaaatattc cttcaactcc ccaatattga taatttgttt atgaaacaca
    14161 ctcgctgcca acgcaccatc cacatttgcc tcaataaaag catcacggaa atgcaccatt
    14221 tcgcctgcac cgcctgaggc gatgagtggg acttggcaaa cttcacgcac ttttttcagt
    14281 tgcaccaaat cgtagccgtt gcgtacgccg tcttggttca tcatattcag cacgatttcg
    14341 cctgctcctc gcttttgcac ttcctccacc caatccaaca attgccattc ggtttggcgg
    14401 gtgcgttttt catcgccggt atattgattg acccaatatt tgccggtttc tgcctcgaac
    14461 cagctatcaa taccaaccac caccgcctgc acgccaaagc gctttgccag ttcggtaatc
    14521 agctcggggt tggcaagggc tggggaattg atggagattt tgtccgctcc gaaagcgaaa
    14581 atctgctccg catcggcaat ggttttgatt ccgcctgcca cacagaacgg aatatcaatc
    14641 acctgtgcca cacgttccac ccagctttta tccaccgttc tgctgtcact tgaggcggta
    14701 atatcgtaaa acaccaactc atccgccccc tcttgggcat aacgctgggc gagtggcaca
    14761 atgtcgccga tgatttcgtg gttgcggaac tgcacgcctt tcacaacttg cccgtcacgc
    14821 acgtctaaac aaggaattat ccgttttgcc aacattcgat tgcctccgct acattaaatt
    14881 taccttccaa caacgcacga ccgacaatca cgccagccac gcccgtacca caaagcgctt
    14941 tgatgtcggc aagcgagccg ataccgcctg aggactgaaa ttgaatctct gggtatttgg
    15001 cacagatttc tcgatagaga tctacatttg aacctgccag cgtgccgtct cgggaaatgt
    15061 cggtgcataa aacgtgttgc aagcccacgg tttgataatc ttcaatcaac tcctcgagcg
    15121 acacaccact tgcctcttgc cagccgctca tcgcaatgat tttttgaccg attgcatcaa
    15181 tgttcacatc cagtgccagc acaaatttct ccgcaccgta ctttttgaac cagcctttaa
    15241 ccatttcacg ctcttttacc gcagtcgaac caatcaccac acggtttgct ccaacagcaa
    15301 gtaaatccgc cacatcctgc tcggtgcgga taccgccgcc cacttgaatt ttgcagtggg
    15361 tttcacgaat aattttgccg ataagtgcgg tctgtctttg agccggattt ttcgcccctg
    15421 taagatcgac caaatgtaac tgctccgccc cttgtgccaa gtagtcggca aattgggcaa
    15481 tcgggtcatc ggcataagtc gtctgtttcg cataatcgcc ctgatgtagg cgaactactt
    15541 gcccatcgat aaggtcgagg gcggggataa tgatggattt ttgcatatta ttgttcctgt
    15601 gtgcctagca cgagccgtgc taggctgaat aatcccagtc gcgctgcgac tgcctctcta
    15661 agctacggag tagcttggtt tatctagccc catacggctc gtatggggta caagcggtca
    15721 aattcttcca aaaacttgca aaaaaccgac cgcacttatt tcttcacctg tttcgccact
    15781 tgttcaatca ccgcagcgaa atcaatcgca ttttgttgcg taatcaccgg tttgccggtc
    15841 tctgcctcca aactttcccg agccactttt gcaacatttc cgccccgttt ggcaacggtt
    15901 ttattttctt ccaagccctg tgggtggctg atttgagcga tgtctttggt ggcagcctca
    15961 gcaagcatat tcagcaccaa ctcggtggtc gtcatattgt ctcgcagact ttcctttttc
    16021 agccctttga aatccttata ttggcgagta gtcataccgc tccacgcctg tgtgatttca
    16081 ttggtgagaa tcgcaaattc tctgcccact tgcacaccgt gatcttgcca agtatccgtc
    16141 agttcttttc gcacctgaat ggcttgcaag cgttggttaa tccactcacg ggaatatccc
    16201 tttttcaagt aagtagccaa agctcggtca atggtcaatt caggatcgat aatctcatca
    16261 atccgctctt tgcctacctc tgccagccac attttcaacg gctcggcttt cgggcttggc
    16321 acagactgaa taatacggaa aatgccttgt aaatccgtgg catcggtttc ccgcattttt
    16381 ccgtctgggg cttttaattt caactgtacg attttttcgt acagttcaat tccgccctct
    16441 tcgtccttga ttttccgctt taaatcactc caataacggc gtggattgct actttgcgtc
    16501 agcacctcga taatgtccac caccgagaaa aaccactctt ctttttcgct atcccacacc
    16561 gagcggattt ggctgttttc aaatagttta atttcgttca tttctcacct tctttcactg
    16621 gttaaattaa cagtaatttt gtcgaaataa agcgagaaat caagccctat tttcaaactt
    16681 ttcgatcgag atcacaaaat cagacattct ccacaaaatt cctgagcaac ttcgccccag
    16741 cctcgcccga acgctcgggg tggaactgta cgccgtagaa gttttggctg gcaatggcag
    16801 cggaaaacgg cacgccgtag tcgcaggtgg cgatggtgtt ctcattcggt agcacaccgt
    16861 agctatgcac aaaatagaaa tgattgcctt gctcaatgtc gtgaaatagc ggatggtcgg
    16921 cttggtattg caccttgttc cagcccatat gcggcaacgg caaaccgcat tcaggcaagc
    16981 gttcggtttt gccactcatt aagttcagtg ttgccacatc gccttcgtgg gaaaagtccg
    17041 tcattaactg cattcctaag cagatgccaa gcatcggctg ggtggcgttg cgaatggtgt
    17101 cgataagtcg gcgatcgtgc aagatcgcca tcgccgccgc tgctgttccc acaccgggga
    17161 gtagcaattt atcggcagat tggattttgt tgagatctcg cgagatctca gcccgaatgc
    17221 caagacggtc aaaagcaaat ttgaccgaag acaggttggc acagcctgtg tcgatgatgg
    17281 tgaggttggt catttagttt cctgagttaa gtatttctta tagtgaagta aaattgactc
    17341 aatatatctg tttccttcaa aagctttctt atcgaatctt ttgataattg ccaaaaataa
    17401 actattaaag aaaaaatcag atttaaaatt attatttagt aaatctatat cta
//
LOCUS       DANLZD010000047        16712 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.047, whole genome shotgun sequence.
ACCESSION   DANLZD010000047 DANLZD010000000
VERSION     DANLZD010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16712)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16712)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16712
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.047"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..165)
                     /locus_tag="PXE26_001122"
     CDS             complement(<1..165)
                     /locus_tag="PXE26_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011497995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5593716.1"
                     /translation="MFYSNNPLIKHKSGLLNLAEELGNISQACKVMGMSRDTFYRYQQ
                     AVEQGGVEALL"
     gene            complement(249..788)
                     /locus_tag="PXE26_001123"
     CDS             complement(249..788)
                     /locus_tag="PXE26_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5593717.1"
                     /translation="MLDSLKEVNQKLDKKADKVGGGTKEDALVTLDTLIASGTVKAET
                     AMSLLPTLQKGAVATGASSEDMAKIAISSMQQFGIKEEDIGRALDMAVAAGQAGSFEL
                     AYMASWLPQQMAAAKQAGLSSIEGFERLLIANQQARVTAGTSDEAGNNLVNLLGKITA
                     KETNERFKNIEYKSVEDQT"
     gene            887..1138
                     /locus_tag="PXE26_001124"
     CDS             887..1138
                     /locus_tag="PXE26_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5593718.1"
                     /translation="MAPTISDGDQMLVDFSKKEARGDDKIYLVQNGESVWVKRVRKVW
                     DYVELISDNESYRPIRITADEAQNLQIIGQVVHIGHSLV"
     gene            complement(1334..1534)
                     /locus_tag="PXE26_001125"
     CDS             complement(1334..1534)
                     /locus_tag="PXE26_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDL5593719.1"
                     /translation="MQYVLDLTGYACPLPLLMAKKAMNDLKKGDSLEILLNQQSSLTD
                     FELLAKEQGWLCELQAVENVGY"
     gene            complement(1593..2105)
                     /locus_tag="PXE26_001126"
     CDS             complement(1593..2105)
                     /locus_tag="PXE26_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HDL5593720.1"
                     /translation="MQQLEPQTFASWAEPIDMLYACHSKVKSFCKQLQILPDYLEKNG
                     VNQAVKNDVQQILNYFNISAPLHHEDEEDDFFPELIKVQPQAQAEVDELERQHVHLHK
                     NWDYLSAQLEDLLAGKRENVDRDLIERFVAGYDVHIAIEEPLFELGREHLAQDKLSAM
                     GKVMADRRKL"
     gene            complement(2118..3272)
                     /gene="tgt"
                     /locus_tag="PXE26_001127"
     CDS             complement(2118..3272)
                     /gene="tgt"
                     /locus_tag="PXE26_001127"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HDL5593721.1"
                     /translation="MKYELKTTSGNARRGRLTFNRPKGEFHVETPAFMPVGTYGTVKG
                     MTPEEVKATGAQILLGNTFHLWLRPGQEVMKMHGDLHDFMQWHGPILTDSGGFQVFSL
                     GKLRKIKEEGVTFQNPISGEKIFLSPEKSMEIQYDLGSDIVMIFDECTPYPATFDYAK
                     KSMEMSLRWAKRSRDRFDELENPNALFGIIQGGIYEELRKVSVEKLVEIGFDGYAVGG
                     LAVGEPKEDMHRILEYVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNA
                     RNGHLFVTNGIVKIRNAKYRADTTPLDPECDCYTCKNYTKAYLYHLDKCGEILGARLN
                     TIHNLRYYQRLMAEIRQAIEEDRFDDFVVEFYARIGKEVPPLQSEVKEQK"
     gene            complement(3331..3471)
                     /locus_tag="PXE26_001128"
     CDS             complement(3331..3471)
                     /locus_tag="PXE26_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593722.1"
                     /translation="MKKLLLCVGILVLAACSSTGVGGSIGAGGGSNGVGIGLGVGTDF
                     RF"
     gene            3565..4137
                     /locus_tag="PXE26_001129"
     CDS             3565..4137
                     /locus_tag="PXE26_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1439 domain-containing protein"
                     /protein_id="HDL5593723.1"
                     /translation="MKILRKFAAVCVVSMAMLSANANLLTISEQEINDYLATKLAEKI
                     PLKDKVGIPKLFELDYRLHSLTSQIGRTEEKKVAISGVVDGLLNAKGKKYAASIHLNM
                     DTTPYYDPQKGALFLKDVRLLSWSATPAKYQAELQMFLPVLADGLSSFLNSTPVYTLD
                     ENKTKEAMVKKFGKAIVVENGNIKLETTIF"
     gene            4239..4457
                     /gene="cspD"
                     /locus_tag="PXE26_001130"
     CDS             4239..4457
                     /gene="cspD"
                     /locus_tag="PXE26_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein CspD"
                     /protein_id="HDL5593724.1"
                     /translation="MDIGIVKWFNNVKGFGFITSDVCEGDIFAHFSEIQAEGYRSLKV
                     GQKVQFELVQGERGASASNITPISEKTL"
     gene            4547..5461
                     /locus_tag="PXE26_001131"
     CDS             4547..5461
                     /locus_tag="PXE26_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5593725.1"
                     /translation="MPSSYQLVLINLLYIFGIGLNIVLLRFLSLHFDPLNNNGIRFLV
                     GGFTLLFFILWRFRTSLSQLIKTPKLIAISLFVGLMMSANMYFWLKGVKITNAVTVSI
                     FGVLAMPFGVIIAAIFFQDERERIKSKAFWFGSILTIIGSLGFIWHGKTLSIGEGFIL
                     GSVFLFLSIIIRNIQNLVVKFARELNVLTLSCVTSLTTSLSSLLLSQQAGKFNELFTA
                     PNWLLFSLMVAGIYAIMIGMVLTFHIIQTQGLITYQVLELLMPVSTAIIAYILLDERI
                     SIVQMGFACIVILGSSIALKLVKYPKHY"
     gene            5580..6440
                     /gene="araC"
                     /locus_tag="PXE26_001132"
     CDS             5580..6440
                     /gene="araC"
                     /locus_tag="PXE26_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose operon transcriptional regulator AraC"
                     /protein_id="HDL5593726.1"
                     /translation="MYKNLSLLSPTYPFDLEFIAGLTQCEKGNYLDSIVDRQQGMHGY
                     MLQLTTFGRGSVFDGKHVFTAHRGQLLLFTPNAVQHYHRHPESQYWHYKWVYFQPNPK
                     WNKWLNWSDMEEKIGRITISDDRYFQEISQLFSKIELELKSSKFFKEDIATSLLEYLL
                     MKCISAEKIEVIPVIDQRILTVCDLILTNLAKNESLEAMAEKVFLSPSRLSHLFKQSL
                     GISLVQWRELQRISESKKLLYFSNISISNIAKSLGYEDSLYFSKIFKKHTGLSPSEFR
                     TLERRKDSEM"
     gene            6627..7601
                     /locus_tag="PXE26_001133"
     CDS             6627..7601
                     /locus_tag="PXE26_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL5593727.1"
                     /translation="MKKPTFKHALFSSILALACYGSAFANDVVNISKIDGMPWFNRMA
                     EGVVQAGKDNNINAYQVGPSNTDAPQQVKLIEDLIAKKVSAISIVPNDANALEPVLKK
                     AKQNGIVVLTNESVGQPSADWDIEIIDNAQFAADYVEEVAKAMGGKGGYVIYVGGLTV
                     PQHNLWADLFVKYQKEHYPDMFEVTSRMPVAENINDARRTTIDLVKAHSDLKAVVSFG
                     SQGPIGAGLAVKEKRLKNKLNVFGMMIPSQAANLIKSGDITMGITYDPANAGYALAAV
                     AAKVLKGEKIEDGLEIPTVGKAKVDSEKKLLQFHNVLKVTKENIDKLY"
     gene            7656..9146
                     /locus_tag="PXE26_001134"
     CDS             7656..9146
                     /locus_tag="PXE26_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5593728.1"
                     /translation="MAFISMRHISKTFHGIKALNQVNLSLDYGEALCLAGQNGCGKST
                     LIKILSGVYQPDKGAEIQIGATQYTKLTPQESIDKGIQVIYQDLALFPNLTVAENIAI
                     NLHRKFGWVSQDHIHQVALTAIQSINANLDLNAILEDLPIAQQQLVAICRALAQNARL
                     LIMDEPTASLTAKEVKDLLDVVIKLKSKGISIIFVSHKLQEVMSVSDSVLVLKDGNMV
                     GQYPIREMNEKRLGFLMTGLEIDYKRLDLPDFLQRKTVLEVRNLTLPHQYQEINFSLR
                     EGEIVALTGLLGSGRTELCLSLFGITQPQSGDILLNGEKVIFNTNRDAIAKGIAYVSE
                     DRMHTGLIMAESIHHNIISTIFHKITDKLQIIQSSKAYASSQALIDSLKIKVSDSDLP
                     VNTLSGGNAQRVSIAKWLAIDPKIIILDAPTIGVDIANKEGIFQIIKSLAQQGIAVIF
                     VTDEVEETYYNSHRVIVMKKGRIVDEILPAYSSEKSIAEVIYENQQ"
     gene            9130..10089
                     /locus_tag="PXE26_001135"
     CDS             9130..10089
                     /locus_tag="PXE26_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5593729.1"
                     /translation="MKISNNHILSSTLLILILLLTLFTRDFATIENLYDVVNNYAMLM
                     ILACGLFVVLLSGGIDISFPAITIISQYVMVTLIGKYDVGFAGVFVISSTIGILLGFI
                     NALFVNRLSVPSIIITISTLNIFYGGLLYFTKGVWLYEYPEWFTQEIVFFKQITAEGV
                     EFGLSFQALMAILAVILTGLITNKLTIGRKIYALGGNPDATSRIGFNLLFLHLFAYGY
                     MGFMAGLAGIVQSYTVQSVAPDSLLGYELTVLAAVVLGGASLSGGRGTLLGTVMGVML
                     LAIIQNGLNLMNVSSYWQTIITGIIIILSISATALSQRKKQGA"
     gene            10092..11042
                     /locus_tag="PXE26_001136"
     CDS             10092..11042
                     /locus_tag="PXE26_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5593730.1"
                     /translation="MKSKLDPTIFYLLALFAVAVIAFSIFIPDIFWSVSNFQSMASQI
                     PVLGILTLAMALPMLTGGINLSIIAGMNACSLIIAYFITQYTGISWLFIAILLSLCCA
                     LAIGLLNGTLIAIIRVSPILATLGTMTLINGINILVTNGSTIANFPETMLSINASAFL
                     WIPLPILIFLFLAGLIWFFLEKTAMGKAVYFIGNNEKATYYSGINTKKVLIWVYVISS
                     ILCVFAAILMMSKLNSAKASYGDSYLLISILAAVLGGINPDGGKGKLLGIMLALVLLQ
                     VIESGLNMLGISSYITMILWGSLLLFFIFLQKNRLFRLTQ"
     gene            11055..12650
                     /locus_tag="PXE26_001137"
     CDS             11055..12650
                     /locus_tag="PXE26_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HDL5593731.1"
                     /translation="MQNEKQLIEQGNTVIGIELGSTRIKAVLISSDGTILATGGADWE
                     NRLIDGIWTYHQNEIWEKLQAAYMDLSKTVKEKYHTTIRTAKALGISAMMHGYLPFDK
                     HGNPLVAFRTWRNNITLTSSEKLTALFQYPIPQRWSIAHLHQALLNQEPHLPEIDYLT
                     TLSGYVHWQLTDHKVLGIGDASGMFPIDTELKSYNPTMLAQFDRAIADYRMPWKLEAI
                     LPQVRVAGEQAGKLTEKGAKLLDPTDNLQAGIPLCPPEGDAGTGMIATNCIKEKTGNI
                     SAGTSAFAMIVLEKALSKAYSELDIVTTPAGKLVAMAHANNCTSDINAWVNLFGECLS
                     VFGVNICTEELYEMLFLHALQGDADCGGLLSYGFHSGEHNVGLSEGCPVFLHPTNAHF
                     NLANFMRTHLYTAFGAMKLGMDILINQEKVEISRILGHGGIFKTEGVAQKILSSALNI
                     PLATASTASNGGAWGIALLADFLSVSDRYSLEEYLDNCIFNTTKLNLVQPDKTMSEGY
                     ERFMQRYKQGIPVVEKALFLNTD"
     gene            12880..14082
                     /gene="yedE"
                     /locus_tag="PXE26_001138"
                     /pseudo
     CDS             12880..14082
                     /gene="yedE"
                     /locus_tag="PXE26_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005824242.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
     gene            14118..14387
                     /gene="yedF"
                     /locus_tag="PXE26_001139"
     CDS             14118..14387
                     /gene="yedF"
                     /locus_tag="PXE26_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007241376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDL5593732.1"
                     /translation="MAFTVVQKLDKDPKDITPDYTLDTLGEPCPYPAITMLETMPQLQ
                     KGEILELLSDCSQSINNIPIDTKNHGYTLLSVEQNGTKLRYLIQR"
     gene            14487..14831
                     /locus_tag="PXE26_001140"
     CDS             14487..14831
                     /locus_tag="PXE26_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HDL5593733.1"
                     /translation="MNKYALLAIFWFIIGIYALLFRESTNDIPPFPHFDKVSHFALFF
                     IQIWLSANAFIRSKKGIPYFGLIIFALLYAFTSEWAQATFTSTREGSWLDGLADMLGA
                     SLSLLLVKYCKK"
     gene            complement(14894..15841)
                     /locus_tag="PXE26_001141"
     CDS             complement(14894..15841)
                     /locus_tag="PXE26_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HDL5593734.1"
                     /translation="MNRITQILNIKHPIVQAPMSWLTDAHLVASVAEAGGLGFLAPHA
                     GQTTNPTSNEEVLDRMRNEIRKVKALTDKPFGVPFILSYDFSLIPLMVDLFIEERVPV
                     VLDNGWLDPEIYAKFKAAGIKIICRLPNPNLADALKAQALGADILVLTGFDEGGTLPM
                     KEVGSFNVLAEFVGKVDLPIMLAGGIADKKAVQAALTLGAEGVWIGTAFIATEECRAS
                     EKVKNWIVEANANDLLLFRTEPHYYRSLPTGLAKKCFEMSENGATRSEIAKVMNAGTG
                     MRLGMLEGDFDNGYVSVGNGISQINKIKSVKELIDELMA"
     gene            16024..>16712
                     /locus_tag="PXE26_001142"
     CDS             16024..>16712
                     /locus_tag="PXE26_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593735.1"
                     /translation="MSIRWENIKPLQGSQNSAFEELVCQLARQEFKSQGKFTRISAPD
                     GGIEAMCELPDGSVCGWQAKYFLSSFSSSQWQQIEDSFKESLKNYPKLTKYYVCVATD
                     RANANVSGKKSFLTKWEEYTQRWKDFAQSQGREIEFEFWGSFELSDLLSKPENAGKKF
                     FWFNESELSDKWFEQYNQQAINNLGVRYTPEINVDLPIAMQLESLARTQIFKKHLSDE
                     FHKLLVEIKSQ"
BASE COUNT         4905 a         3369 c         3232 g         5206 t
ORIGIN      
        1 cagcaatgct tcaacaccac cttgctcaac cgcttgttga taacgataga atgtatctcg
       61 gctcattccc attactttgc aggcttgaga aatattaccc agttcttctg ctaaatttaa
      121 taaaccgctc ttgtgtttaa tgagagggtt gttagaataa aacatgagag tttccttttt
      181 gtttagattg atttttgaca ctcatattct aaacgggaaa ctctcacttt ttagagtgaa
      241 ttgtcagatc aagtctgatc ttctacactt ttatattcaa tatttttaaa acgctcattt
      301 gtttctttag ctgtaatctt accaagcaga tttaccagat tattacctgc ctcatcgctt
      361 gtaccggcag tgacacgagc ctgttggttt gcaattaaaa gtcgctcaaa gccctcaata
      421 ctactcaaac cggcttgttt tgcagctgcc atttgttgag gcaaccaact tgccatatat
      481 gcaagctcaa aactacctgc ttgcccggct gcaacagcca tatccaatgc ccgcccaata
      541 tcctcttctt tgatgccaaa ttgttgcata gaggagatcg caatttttgc catatcctcc
      601 gagcttgccc ctgttgccac cgcccctttc tgcaaagtag gtaatagact cattgcggtt
      661 tcggctttga ctgtaccgga ggcaatgagc gtatcaagcg taactaacgc atcctctttt
      721 gtgccacccc caaccttatc cgccttttta tcaagttttt ggtttacttc tttgagcgag
      781 tctaaaatat cgtccagctt ttccttaaga gccttattca gacagcctat taagcctagg
      841 cgtaaaagcc cataattgtg gcgtattttg ggctaatggc acatcaatgg ccccgactat
      901 cagcgatggt gatcaaatgt tagtggattt cagcaaaaaa gaagcccgtg gagacgataa
      961 gatttatctt gtgcaaaatg gtgaaagcgt ttgggtaaaa cgtgtaagaa aagtgtggga
     1021 ctacgttgaa ttgattagcg ataatgagtc ctaccgccca atccgaatta cagcagacga
     1081 agctcaaaac ttacaaatca tcgggcaggt agtccacatc ggacactctt tagtttaaaa
     1141 cagatttaaa atagttttaa aaccgatcaa acctatgcaa aaaatatcgc aaaaactgcc
     1201 catttttttc taatcctgct cattttgttt tttgcatagc cccaaccaaa caataacggc
     1261 gaacccttgt attcacgggg ctcgccgtta tttttccgcc caaatttttt tctttctctc
     1321 tatgcaaaaa agatcagtac cccacatttt caaccgcttg tagctcacaa agccaacctt
     1381 gctctttggc aagcagttca aaatcggtaa ggctactctg ctgattgagt aaaatttcca
     1441 agctatcgcc ctttttaaga tcgttcatcg ctttttttgc cattaataac ggcaaggggc
     1501 aggcatagcc ggttaaatct aaaacatatt gcatagcgaa atagggaata aagaaaaagg
     1561 gcgaatattg aaattcgccc aatcacaaaa gattagagtt tacggcggtc tgccatcact
     1621 ttgcccatag ccgataattt gtcttgagct aaatgctctc gcccaagctc aaagagtggc
     1681 tcttcaatcg caatatgcac atcataacct gccacaaaac gctcaattaa gtctctatcc
     1741 acattttcac gtttacctgc gagcagatct tcaagctgtg ccgacaaata gtcccaattt
     1801 ttatgtaaat gaacgtgctg gcgttccagt tcgtctacct ctgcttgagc ttgtggttgc
     1861 accttaataa gctcagggaa gaaatcatct tcttcatctt cgtgatgtaa aggggcagaa
     1921 atgttgaagt agttcaaaat ctgctgcacg tcattcttca ctgcttggtt taccccgttt
     1981 ttctcaaggt aatccggcaa aatttgcaac tgtttacaga aactttttac tttgctgtgg
     2041 caagcataaa gcatatcaat cggctctgcc cagcttgcaa aggtttgtgg ttcaagttgt
     2101 tgcatataca ctccttgtta tttctgttct tttacttcag attgtaaagg tggcacttct
     2161 ttgccaattc gggcataaaa ttccactaca aaatcatcaa aacgatcttc ttcgatggcc
     2221 tggcgaattt ctgccattag gcgttgatag tagcgtaaat tatgaatggt gtttagtctt
     2281 gcccctaaaa tctcgccaca tttgtctaag tgatataaat aggctttggt gtagtttttg
     2341 caagtgtaac aatcacattc aggatcaagc ggtgtggtgt ctgcacgata tttcgcatta
     2401 cgaattttta caatgccgtt ggtcacaaat aaatgtccgt tacgggcatt gcgggttggc
     2461 attacgcagt caaacatatc aataccacgg cgaacccctt cgactaaatc ttctggcttg
     2521 cctacaccca ttaaatagcg tggtttatct gccggaattt gcgggcaaac gtattctaaa
     2581 atgcggtgca tatcttcttt aggttcacct accgccaagc caccgactgc atagccatca
     2641 aagccgattt caactaattt ttccaccgag actttgcgaa gttcttcata aataccacct
     2701 tgaataatgc caaataacgc attcgggttt tcaagttcat caaagcgatc acgagaacgt
     2761 ttcgcccaac gtagtgacat ttccatcgat ttttttgcat aatcaaaggt tgccggataa
     2821 ggagtacatt catcaaaaat cattacaatg tctgatccaa gatcgtattg gatctccatt
     2881 gatttttccg gcgaaaggaa aattttctca ccgctaatcg ggttttggaa agttacgcct
     2941 tcttctttaa ttttacgcag tttacctaag ctaaaaactt ggaaaccgcc ggagtcggtt
     3001 aaaatagggc cgtgccattg cataaaatcg tgcaagtcac cgtgcatctt catcacttct
     3061 tgccccggtc ttaaccataa atggaaagtg ttgcctaata aaatttgcgc ccctgtcgct
     3121 ttaacttctt caggagtcat tccttttacc gtgccataag tgccaacagg cataaatgcc
     3181 ggtgtttcaa cgtgaaattc gcctttcggg cggttaaaag ttaaacgccc acgacgagcg
     3241 ttaccacttg ttgtttttaa ttcgtacttc attttaatcc acaaataaac agttcgtgaa
     3301 agcggtcaaa aaccaccaaa aatttaccaa ttagaatcga aagtcggtgc cgacccctaa
     3361 gccgattcca acgccgttag agccaccacc ggctccaata ctgccaccca caccggttga
     3421 tgagcaagca gctaacacta aaatgccaac gcataataag agttttttca ttttttgctg
     3481 tcctaaacga aaaagagagt ctatgataga cccaatgtat tctaacctgt ttaatggatt
     3541 aaacctaatt ttaaagggta aattatgaaa attttacgta aattcgctgc tgtatgcgtt
     3601 gtctcaatgg ctatgctctc tgctaacgct aatttgctca ctattagcga gcaggaaatc
     3661 aacgactatt tagccaccaa attagctgaa aaaattcctt taaaagataa agtcggtatt
     3721 cctaaattat ttgaattgga ttatcgcctg cattcactta ccagccaaat tggcagaacc
     3781 gaggaaaaaa aagtagctat ttctggcgtt gttgatggac ttttaaacgc aaaaggcaag
     3841 aaatatgctg cctctatcca tttaaatatg gataccacgc cttattatga tccacaaaaa
     3901 ggggcattat ttcttaaaga tgtcagattg ttaagttggt ctgcaacacc ggctaaatat
     3961 caagcagagc tgcaaatgtt tttgccggtg ttggctgatg gattaagtag ttttttaaac
     4021 agtacgcctg tttatacttt agatgaaaat aaaacaaaag aagcaatggt gaaaaagttc
     4081 ggcaaagcca ttgtagtaga aaatggtaat atcaagctag aaaccactat tttttaaata
     4141 attttgtgat cttcgtctaa tttttacact ttgatagttg agcttttacg cgttttattt
     4201 acaatccaaa tatcgccatt cattatttgg agagttctat ggatatcggt attgttaaat
     4261 ggtttaacaa tgtaaaagga tttggtttta ttacatcgga tgtatgtgaa ggagacattt
     4321 ttgctcattt ttctgaaatt caagcagaag gttatcgctc tttaaaagtc ggccaaaaag
     4381 tacagtttga attagttcaa ggagagcgag gtgcctcagc ctcaaatatc acgcctataa
     4441 gcgaaaaaac gttataatcc gtcgttaata aaattattgt tataaccata ctttattaga
     4501 ttttaaagct cagcttttac agctgagcca tttttgcttt ttgaatatgc cttcctctta
     4561 tcaattagtc ttaattaacc tactttatat cttcggtatt ggtctaaata ttgtactgct
     4621 taggtttctc agtttgcatt ttgacccatt aaataataac ggtatacgtt ttcttgttgg
     4681 tgggttcacc ttattatttt tcattttatg gagattccgc acatcgctgt ctcagctgat
     4741 taaaactcca aaattgattg cgatttctct atttgtcggg ttaatgatgt ccgcaaatat
     4801 gtatttttgg ctaaaagggg tcaaaattac aaatgctgtt accgtctcta tttttggggt
     4861 attagctatg ccatttggtg tgattattgc cgccatattc tttcaagatg aaagagaacg
     4921 cattaaaagc aaagctttct ggttcggctc aattttaacg atcatcggtt cactcggatt
     4981 tatttggcac gggaaaacac tctcgattgg cgaaggattt attcttggtt ctgtgttctt
     5041 atttttgtcg atcattatcc gtaatataca aaacctagtt gtaaaatttg ctcgagaact
     5101 gaacgtatta accctaagtt gtgtaacatc tttaactact tcactctcga gtctattact
     5161 tagccaacaa gcaggtaaat ttaatgagct ttttactgca ccaaactggc tactattctc
     5221 tctgatggtt gctggtattt atgcgattat gatcggaatg gtattaacct ttcacattat
     5281 ccaaacccaa ggactgataa cctaccaagt attggaacta ttaatgccgg tttcaacagc
     5341 catcattgct tatattttac tggacgaacg tatttccatt gttcaaatgg gctttgcttg
     5401 tattgtgatt ttaggctcaa gtatcgcctt aaagttagta aaatatccta agcactatta
     5461 ggatctttgc taattaatat tggtaaaatt acatttggtt tactaatctg agcgttcatt
     5521 cattagtaat gataaacaag cggttatttt ttgttatttt ttggtaaata ctgatagtca
     5581 tgtataaaaa cctttctttg ctttcaccga cttatccatt tgaccttgaa ttcatcgccg
     5641 gtcttactca atgtgagaaa ggtaactatc ttgattctat tgtcgatagg caacaaggaa
     5701 tgcacggtta tatgcttcaa ttaaccactt ttggtcgtgg ttctgttttt gatggtaagc
     5761 acgtttttac cgctcatcga gggcagttac tcctctttac acccaatgcc gttcaacact
     5821 accaccgtca cccggaaagc caatattggc actacaaatg ggtctatttt cagccgaatc
     5881 ctaaatggaa taaatggctg aattggtcag atatggaaga aaaaatagga cgtatcacca
     5941 ttagcgatga tcgttacttt caggaaatta gccaactttt cagtaaaatt gaattagaac
     6001 ttaaatccag taaatttttt aaagaagata ttgcaacaag tttgttggaa tacttactta
     6061 tgaaatgtat ttccgccgag aaaattgagg ttattcctgt cattgatcaa cgcattttga
     6121 cagtttgtga tttaatctta acgaatttgg ctaaaaatga gagcttagaa gcaatggcag
     6181 aaaaagtatt tttatcgcca tctcgcctct cacatctttt caagcaatcg ctggggatca
     6241 gcttagtgca atggcgggaa ttacaacgca tttccgaatc caaaaaattg ctttatttct
     6301 ctaacatctc tatctctaat attgcgaaat ccttaggcta tgaggattct ctctactttt
     6361 ccaaaatttt caaaaagcat accgggctgt caccctctga gtttagaacc ttagaacggc
     6421 gtaaagacag tgaaatgtga tcttgatctc actttacttt gcatagcaga attttccata
     6481 tcgataacaa aaagttacct gtttttctct cattcaaaag cataagatac aaacagcttt
     6541 aatagtgctg tttctattag agaagggata tcaagctctg tgagtgatat tcagtgaaat
     6601 aacttcttat gtatgaggga agaacaatga aaaaaccaac gttcaagcac gcattatttt
     6661 caagtatttt agctttagcc tgttacggct cggcatttgc caatgatgtt gttaatatct
     6721 ccaaaattga cggtatgccg tggtttaatc gtatggcaga gggtgttgtg caagcaggca
     6781 aagataacaa tatcaatgct tatcaagttg gtccatcaaa taccgatgca ccacaacaag
     6841 taaagttaat tgaagattta attgcgaaaa aagttagtgc tatttccatc gtccctaacg
     6901 atgcaaatgc cttagaaccg gtactgaaaa aagcgaaaca gaacggtatt gtggtattaa
     6961 ccaatgagtc agtcggacaa cctagtgccg attgggatat tgaaattatc gataatgcac
     7021 aatttgcagc agactatgta gaagaagtag caaaagctat gggcggaaaa ggcggctatg
     7081 tgatttatgt tggtggttta accgtgcctc aacataatct gtgggctgat ttattcgtga
     7141 aataccagaa agagcattat ccggatatgt ttgaagtgac cagcagaatg cctgttgccg
     7201 aaaatattaa tgatgcacgc cgtaccacca ttgatttagt gaaagcccat tccgatctta
     7261 aagcggtcgt ttcttttggt tcacaaggtc ctattggtgc agggttggca gtgaaagaaa
     7321 aacgcttaaa aaataaatta aatgtcttcg gaatgatgat tccttcccaa gcagccaatt
     7381 taattaaaag cggtgatatt acaatgggaa ttacctatga cccggccaat gcaggttatg
     7441 ctttagctgc tgtcgctgcc aaagtattaa aaggcgaaaa aattgaggat ggattagaga
     7501 tcccaacggt cggtaaagcc aaagtagata gtgagaaaaa actacttcaa ttccacaatg
     7561 tgctgaaagt caccaaggaa aatatcgata aattatatta atttgcttga aatatgggct
     7621 gatagccagc ccatattttc cctcaggagg cacttatggc atttatttcg atgcggcata
     7681 tcagtaaaac attccacggc ataaaagcat taaatcaagt caatctctca ttagattatg
     7741 gcgaagcact ttgtcttgcc ggtcaaaatg gctgtggaaa atcaaccttg atcaaaattc
     7801 tttccggcgt ttatcaaccg gataaagggg ctgaaattca aattggtgca acccaatata
     7861 ccaagctgac accacaggaa tcgattgata aaggtattca agtgatttat caagatttag
     7921 ccctcttccc caatttaacc gtggcagaaa atattgccat taacctgcac cgaaaatttg
     7981 gctgggtgag tcaagatcac attcatcagg ttgccctcac tgctattcaa agcattaatg
     8041 caaatctaga cctgaatgca atattagaag atttaccgat cgctcaacaa cagttagtcg
     8101 ctatttgtcg agcgttagca caaaatgcca gattattgat tatggacgag ccgactgcct
     8161 cacttactgc aaaagaggtc aaagatctgt tagatgtcgt catcaaactt aaaagcaaag
     8221 gcattagcat catctttgtc agtcataaat tgcaagaagt aatgagtgtt tccgatagcg
     8281 tattagtgct gaaagatggc aatatggttg ggcaatatcc tatccgtgaa atgaatgaaa
     8341 aacgccttgg tttcctaatg actgggctgg aaatcgatta caagcggtta gatttgccgg
     8401 attttttgca aagaaaaacc gtattggaag tccgcaattt aacgctgcct catcagtatc
     8461 aagagattaa cttttcgcta cgagaagggg aaattgttgc ccttacagga ttgctcggtt
     8521 cagggcgtac tgagctttgc ctaagtttat tcggcattac tcaaccacaa tccggcgata
     8581 ttttattaaa cggtgaaaaa gtgatattta acactaaccg tgatgccatt gccaaaggga
     8641 ttgcttatgt atcggaagat agaatgcaca ccgggctgat tatggcagag tcgattcatc
     8701 acaatattat ttcgactatt tttcacaaaa tcaccgataa attacagatt attcaatcct
     8761 cgaaggctta tgcaagtagc caagccttga ttgattcatt aaagattaaa gtatccgatt
     8821 cagatttgcc tgttaatacc ctttccggag ggaacgcaca gcgagtttcg attgcaaaat
     8881 ggctggcaat cgaccccaaa attattattt tagatgcccc gactattggg gtcgatatcg
     8941 ccaataaaga agggatcttc caaattatta aatcattggc tcagcaaggc attgcagtta
     9001 tttttgtgac tgatgaagtg gaagagacct actacaacag ccatcgggta attgtaatga
     9061 aaaaaggtcg cattgttgat gaaatcttgc cggcatattc cagtgaaaaa tcgattgcgg
     9121 aggttattta tgaaaatcag caataatcat attctttcca gtacgttact gattttaatc
     9181 ctattattaa ccctatttac tcgtgatttt gcaactattg agaaccttta tgatgttgta
     9241 aataattacg caatgttaat gattttagct tgtggtttat ttgtggtatt gctgtctggc
     9301 ggcattgata tttctttccc tgctatcact attatttccc aatatgttat ggtcactctg
     9361 atcggtaaat atgatgtagg atttgccggc gtttttgtta tttcttccac catcggcata
     9421 ttattaggtt ttattaatgc tctatttgtt aatcggctta gtgtcccttc cattattatt
     9481 acgatctcaa cactcaatat tttttatggc ggactactct attttaccaa aggtgtatgg
     9541 ctttatgagt atcccgaatg gtttacccaa gaaatcgtgt tctttaaaca gataactgct
     9601 gagggagtgg aatttggatt atcgtttcaa gcattaatgg ctattttggc ggtgatatta
     9661 accggcttaa ttaccaataa actcactatt ggtcgaaaaa tttacgctct tggtggtaat
     9721 ccggatgcaa cctcccgtat tgggtttaat ctcttatttc tccatctatt tgcatacggt
     9781 tatatgggct ttatggcagg cttggcaggc atagtgcaat cttataccgt acaatctgtc
     9841 gcaccggatt cactactggg ttatgaatta accgtcctag ctgccgttgt attaggtggt
     9901 gctagtttat caggtggtag aggcaccctg cttggtacag taatgggcgt aatgttactg
     9961 gcgattattc aaaacgggct aaatttaatg aatgtatcgt cttactggca aaccattatt
    10021 accggtatca tcattatctt aagtattagt gcaacagcct taagtcagcg gaaaaaacaa
    10081 ggagcataac gatgaaaagt aaactggatc caacgatttt ctatctctta gcactcttcg
    10141 cagttgcagt tatcgccttt agtattttca ttccggatat tttttggtct gtcagtaact
    10201 ttcaatctat ggcatcacaa attccagtat taggtatttt aaccctagca atggcattac
    10261 cgatgttaac aggtggaata aatctttcca ttattgccgg aatgaatgct tgctcattaa
    10321 ttattgccta ctttattacg caatataccg gtatttcttg gttatttatt gctattttat
    10381 taagcctttg ctgtgcctta gccattggat tactcaacgg cacattaatt gccattattc
    10441 gtgtttcacc aattttggca accttaggca caatgacttt aattaacggc attaatattc
    10501 tagtcactaa cggttcaacc attgcgaact ttccggaaac aatgttgagt attaatgctt
    10561 cagccttttt atggattccg ctacccattc taatctttct ctttcttgct gggctgattt
    10621 ggtttttctt agaaaaaact gcaatgggta aagcggttta tttcatcggc aataatgaaa
    10681 aagccaccta ttattcgggt attaatacca aaaaagtgct gatttgggtt tatgttatct
    10741 cctcaattct ttgtgtattt gcagctattt tgatgatgtc taaactcaat tctgcaaaag
    10801 cctcttatgg tgattcctat ttgttgatct ccattttagc cgcagtattg ggcggtatta
    10861 accctgatgg aggtaaaggg aaactattag ggattatgct cgccttagtt ttattacaag
    10921 tgattgaaag tggcttaaat atgctcggca ttagcagtta cattacaatg attttatggg
    10981 gaagcttatt gttattcttt atcttcctcc aaaaaaatcg ccttttccga ctaacacagt
    11041 aatggtggta gattatgcaa aatgaaaaac aactcattga acaaggtaat actgttattg
    11101 gtattgaatt gggctcaacc cgaattaaag cggtgttaat tagctcagat gggacgattt
    11161 tagcaaccgg tggggcggat tgggaaaatc gactgattga cggtatttgg acctatcatc
    11221 aaaatgaaat atgggaaaaa ctacaagctg cttatatgga tttaagcaag acagtcaaag
    11281 aaaaatatca cacaaccatt cgcacagcca aagcattggg aattagtgcg atgatgcacg
    11341 gctacttacc tttcgataaa cacggaaatc cgctggttgc ctttagaact tggcgaaaca
    11401 acattaccct aacctcatcg gaaaaattga ccgcactctt tcaataccca attccgcaac
    11461 gttggagtat tgctcattta caccaagcat tgcttaacca agagcctcac ttgccggaaa
    11521 ttgattacct gacaaccctc tcaggttatg tgcattggca actgaccgat cacaaagtgt
    11581 tagggattgg cgatgcttcc ggcatgttcc cgatagatac tgagttgaaa tcctacaatc
    11641 caacaatgct ggctcaattt gatcgagcca ttgccgacta ccgtatgcct tggaaattgg
    11701 aagcgatttt gccacaagtt cgtgttgctg gtgaacaagc gggcaaatta accgaaaaag
    11761 gtgcaaaatt gttagatcca accgataatt tgcaagctgg cattccactt tgtccacctg
    11821 agggtgatgc cggaacaggt atgattgcaa ccaactgtat caaagaaaaa accggtaata
    11881 tttctgccgg cacctccgca tttgcaatga ttgtgttaga aaaagcccta tccaaagcct
    11941 attcagagct ggatattgtg acgaccccgg caggtaaatt agtggcaatg gctcacgcta
    12001 ataattgcac ctctgatatt aatgcgtggg tgaatttatt cggcgaatgc ttatcggttt
    12061 ttggcgtaaa tatctgcacc gaagaacttt atgaaatgtt atttctccat gccttgcaag
    12121 gcgatgcaga ttgtggaggg ctattatcct acggcttcca ctccggtgaa cataatgtcg
    12181 gtttatccga aggctgtccg gttttcttgc atccaacgaa tgcccatttt aacttagcaa
    12241 actttatgcg aacccatctc tataccgctt ttggtgcaat gaaattagga atggacattc
    12301 tcattaacca agaaaaagtg gaaatttccc gtattctcgg tcacggtggt atatttaaaa
    12361 cagaaggtgt tgcacaaaaa attctgtctt ccgcactgaa tattccattg gctaccgcaa
    12421 gtactgcttc aaatggcgga gcttggggaa ttgcattact ggcagacttt ctcagcgtat
    12481 cagaccgtta cagtttagaa gaatatttag ataattgcat tttcaacacc accaaactca
    12541 atctggttca accggataaa acaatgagtg aaggttatga acgctttatg caacgttata
    12601 agcaaggcat tcctgtggta gaaaaagcgt tgtttttaaa tacagattaa ataattataa
    12661 tttaagtatc acaagcggtt atttttgcaa aaaacgaccg cttgttattt acatttgtac
    12721 aaaaaatacc tactataaag acgcatttgt aaaatgtgca ttgatatatc gcaagttttg
    12781 tgtataggaa atgaactaat tactgtgtca atcagtccct ttcttcatcg ttataccctc
    12841 ttgcaaatcc gattaatcta tccttagtta aggtgtttta tgttagcgat ttggcaaagt
    12901 tttaaacaaa attatctaat caaatattgg aatcctgttg cagcagtgat cgcagctggt
    12961 attatttcag cttattattt cggcattact ggcacttatt gggcggttac aggggaattt
    13021 acccgttggg gcggtcatct gttaaatgct ttgggtgttg atgtttcgaa ctggagctat
    13081 tttcaactca tcggcttaga cggcaccatc tttacccgca ttgacggtgt gatgattctc
    13141 ggtatgtttg ccggctgtct ttctgccgca ttatgggcga acaacgtcaa atggcataat
    13201 cagccacata aaaaacggat tatccaagcc ttgattggcg gtgcgttagc cggtttcgga
    13261 gcccgtttag caatgggctg taacctcgcc tctcttttta ccggtattcc gcaattctcc
    13321 gtccacgctt ggtttttcac ctttgcgacc gccatcggca cttactttgg ggtaaaagtg
    13381 actttattac cgatgtttag agtgaaatta gagctgaaaa aaggggcagc aaaaatcaaa
    13441 gaaaacgatc cgaaacaagc taatcgccgt ttttgggttg gtatgctcat ttttatcact
    13501 tatctttctg cttcccttta tgtaatgcaa tcctcaatca aacttggttt tgcaatgctt
    13561 tgcggcttag cctttggctt attgattgaa cgagcccaaa tttgctttac ctccgctttc
    13621 cgtgacttat ggattaccgg acgggcttat atggcaaaag caattatttt cggcattatt
    13681 gccggcacaa tcggcgtgtt ctcttatatt caattaggtg tttcacctaa aattttgtgg
    13741 gctggcccaa atgccattat cggcggatta ttattcggat ttggcattgt gcttgccggc
    13801 ggctgtgaaa ccggctggat gtaccgttca atggaaggac aggttcattt tatgtgggtc
    13861 ggcgtaggca atgtagtcgg ttcaaccctg ctggcttact actgaggcga cttagctccg
    13921 gtgcttaccc ttgattatga aaaaatcaac ctactcaaag aatttgggcc ggttggcgga
    13981 ttattcatca attatggctt attaattctt tgcttaatcg ctgtagtttg gtgggaaaaa
    14041 cgcttccttg ccaaagcgaa agcaaaatta gcaactgcgt aatcttttta acttcaacca
    14101 acaagaggaa aatgactatg gcattcaccg ttgtacaaaa actagataaa gatccaaaag
    14161 acatcacgcc tgattacacc ttagatacct taggcgaacc ttgcccttac cctgcgatta
    14221 cgatgttaga aacaatgcca cagctgcaaa aaggagagat attggaactg ttaagcgatt
    14281 gttcccaatc gattaataat attccgattg atactaaaaa tcacggctat accctattaa
    14341 gcgtggaaca aaacggcact aaattacgct atttaattca gcgttaattg caaaaaattc
    14401 gcacaaaacg accgcttgtc gtaaaatagc aactatttaa gagccttgta acgcaaggct
    14461 cttttattct aagaggtaaa agaaaaatga ataaatacgc tttacttgca atattttggt
    14521 ttattattgg catttatgct ttactttttc gtgaaagcac taatgatata ccgccttttc
    14581 cacattttga taaagtaagc cattttgcct tattctttat ccagatctgg ttatctgcaa
    14641 acgcctttat ccgttcaaag aaagggatac cttattttgg gctaataatt tttgccttac
    14701 tctatgcttt caccagcgaa tgggctcagg caaccttcac ctcaacccga gaaggttctt
    14761 ggcttgatgg gctagcagat atgctaggag cctcactttc attattgctg gtaaaatatt
    14821 gcaaaaaata aagcataaaa gaccgcttgt tatatggttt agccatacta caagcggtca
    14881 ttttttacca aaattatgcc atcaactcat caatcaattc tttcacactt ttgattttgt
    14941 tgatttgtga aatgccattg cccaccgaca catagccatt gtcaaaatcc ccttctaaca
    15001 tacccaaacg cattcctgta ccagcgttca ttaccttagc aatctcacta cgagttgccc
    15061 cattttcgct catttcaaag cattttttcg ctaatccagt cggcagtgaa cggtagtaat
    15121 gtggttcggt acggaataac agcagatcat tggcatttgc ctccacaatc cagtttttca
    15181 ctttttcgct tgcacggcat tcttcggtgg cgataaatgc cgtgccaatc cacacgcctt
    15241 cagccccaag cgttaaggca gcctgcaccg cttttttatc ggcaatacca ccagccagca
    15301 ttatcggcaa atccaccttg cccacaaatt ccgccagcac attaaaactg cctacctctt
    15361 tcatcggcaa agtaccgccc tcatcaaaac ccgtcagcac caaaatatct gctcccaatg
    15421 cttgggcttt taaagcgtcc gccaaattgg gattaggcaa acggcagatg attttaatgc
    15481 cagcagcttt gaatttggcg taaatctctg ggtcaagcca gccgttatcc agcaccacag
    15541 gcacacgctc ttcaatgaat aaatccacca ttaacggaat cagcgaaaaa tcataagaca
    15601 aaataaatgg tacgccaaaa ggcttatcgg tcaatgcctt aaccttacga atctcgttac
    15661 gcatacggtc aagtacttct tcgttggaag ttggattggt ggtttgccct gcgtgtgggg
    15721 ctaaaaaacc aagcccacca gcctcggcaa cgcttgctac cagatgagcg tccgtcagcc
    15781 aagacattgg cgcttggacg atagggtgct tgatatttaa gatttgggta atgcggttca
    15841 ttggattttc ctgtttgaat aaaaagaatt ggacgtagtt taatggtttt ggatttgaga
    15901 gggaatgcgt gaaaatggga aggtggtttt cggatttgga aaattatcaa tgctaaaata
    15961 cttgaaatac acacgccaat cctcatatca acaaaattga atatttaatt atggtaaaag
    16021 aaaatgtcta ttagatggga aaacatcaag cccttacaag gttctcaaaa tagtgctttt
    16081 gaagagctag tatgccaatt ggcacgccaa gaatttaaat ctcaaggaaa atttactcga
    16141 atttctgcac ctgatggtgg gattgaagca atgtgtgaat tgccagatgg ttccgtatgt
    16201 ggttggcaag ccaaatattt tttaagctca ttttcttcat cacaatggca acaaattgaa
    16261 gattccttta aagaatcttt aaaaaactat cctaaactaa ccaaatacta tgtttgtgtg
    16321 gcaaccgata gagcaaatgc caatgtatct ggaaagaaat catttcttac caaatgggag
    16381 gagtataccc aaagatggaa agactttgct caatcacaag gtcgtgaaat agaatttgaa
    16441 ttttggggaa gttttgaatt atctgactta ttatcaaaac ctgaaaatgc aggcaaaaaa
    16501 ttcttttggt ttaacgaaag cgaattatct gacaaatggt ttgaacaata caatcaacaa
    16561 gccattaata atcttggtgt gcgttataca cctgaaatta atgttgattt acctattgca
    16621 atgcaattag aaagcttggc aagaacccaa attttcaaaa aacatctgag tgatgaattt
    16681 cataaattgt tagtagaaat taaatcacaa ta
//
LOCUS       DANLZD010000048        16524 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.048, whole genome shotgun sequence.
ACCESSION   DANLZD010000048 DANLZD010000000
VERSION     DANLZD010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16524)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16524)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16524
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.048"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(107..622)
                     /locus_tag="PXE26_001143"
     CDS             complement(107..622)
                     /locus_tag="PXE26_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5593736.1"
                     /translation="MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNT
                     GARREVTEWHRIVFYRRQAEVCGQYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQG
                     DVLQMLGSRQGNDMGGQQGGWGNSAPAGNSYNQGNSNYGYNQTQSAAPQSKPAPQPEP
                     AMNNFDDDIPF"
     gene            777..3605
                     /gene="uvrA"
                     /locus_tag="PXE26_001144"
     CDS             777..3605
                     /gene="uvrA"
                     /locus_tag="PXE26_001144"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HDL5593737.1"
                     /translation="MQHIDIRGARTHNLKNINLTLPRDKFIVITGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTVT
                     EIHDYLRLLFARVGEPRCPDHDVPLAAQTISQMVDRVLEEPEGKRLMLLAPVVKERKG
                     EHVKLLENLTASGYLRARIDGEICDLSDPPALELQKKHTIEVVVDRFKVRADLATRLA
                     ESFETALDLSGSTAIIADMDDPNAEEIVFSSSFACPHCGYSLHELEPRLFSFNNPAGA
                     CPTCDGLGVEQFFDAKKVVQNEEVSLAAGAIKGWDRRSFYYFGLLKAVAEHYGFDLET
                     PFGQLPKKYQNIILNGTKEEIEFVYVNDRGDKVKRKHAFEGVLNNMARRYKETESNSV
                     REELAKYINNRPCMDCEGSRLRREARYVFLDKTNLPMVSEKSIGEALTFFEELKLAGQ
                     KEKIAEKILKEIRERLQFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVM
                     YVLDEPSIGLHQRDNERLLNTLVHLRNLGNTVIVVEHDEDAIRAADHIVDIGPGAGVH
                     GGQVIAQGTAAEIMQIEESITGQFLSGKQKIEIPAQRVPYEPTKLLTLSGASGNNLKK
                     VKLEIPVGLFTCITGVSGSGKSTLVNDTLFPLAQNALNRAENSDVAPYESIDGLSHFD
                     KVIDIDQSPIGRTPRSNPATYTGLFTPIREIFAGTQEARARGYNVGRFSFNVRGGRCE
                     ACQGDGVIKVEMHFLPDVYVPCDHCKGKRYNRETLEIRYKGKTIHQVLEMTVEEAREF
                     FAPMPMIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILD
                     EPTTGLHFADIKQLLGVLHRLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEI
                     IATGTPEEVAKDKRSHTARFLKEILAKG"
     gene            complement(3697..5430)
                     /gene="dauA"
                     /locus_tag="PXE26_001145"
     CDS             complement(3697..5430)
                     /gene="dauA"
                     /locus_tag="PXE26_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylic acid transporter DauA"
                     /protein_id="HDL5593738.1"
                     /translation="MLNKWFLTKNAFLAVKPFSALKDALNAGYGKQHLIRDIISGLTV
                     GVIAIPLSMALAIASGVPPQHGLYTAIVAGIVIALTGGSRFNISGPTAAFVVILYPVT
                     QQFGLSGLLMATMLSGGILVLMALLRLGRLIEYIPLPVTLGFTCGIGIVIATLQIKDF
                     LGLSIEKMPEHYLGKLEAIFSALPTINWADTLVGVVTLLVLTRWHKLRLPIPGHLPAV
                     FIGTLLSLLLIHFGQNVATIGSAFHYTLSDGTTGYGIPSVLPEFVLPWNLPNAEGNRI
                     DWNLTTIQALLPAAFSMAMLGAIESLLCAVVCDNMTDTKHHSNNELLAQGLGNIASPF
                     LGGITATAAIARSAANVRSGAVSPISSVVHALLVLFALLFLAKALSYLPLSSMAALLL
                     VVAWNMADIPQIIQLTRRSGKNEIAVLLTCITLTVLFDMVIAITVGVLLASLLFIRTI
                     AEMTKSFEMAHPTDLNDVLVYRISGPLFFAAADNLFADLHNKTVHTDHQIKHIVLQCD
                     AVTVLDAGGIHALTRFVQHMLPHQQLHLCNVQFQPMRMLVRSQKTVNEIPQIQFSSDL
                     ESAFDKIRQAN"
     gene            5672..6604
                     /locus_tag="PXE26_001146"
     CDS             5672..6604
                     /locus_tag="PXE26_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5593739.1"
                     /translation="MDSLIHFLSAFLTNITWIGALELGLIYSLVALGVLISYKILDFP
                     DLTADGSFPLGGAVCVISILNQVDPWLATLYGTLAGAVAGMVTASLHIGFKIEKLLAS
                     ILMMIALYSINLRIMGMPNIAILGETTIYDVMPIESDLQLALVRLVMALLVVIIVKGL
                     FDLFFATEIGLAVRATGTNSRMAKAQGIAINKMTILGMAISNALIALGGALYVQSNGG
                     VDISIGVGTIVIGLAAVIIGEAIFSVKRIIWLTFAVIIGSILYRFFIALALNNETLNG
                     IGFGPQDLNLITALLVVIVLAVPRIKHKLLGKRG"
     gene            6606..7403
                     /locus_tag="PXE26_001147"
     CDS             6606..7403
                     /locus_tag="PXE26_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5593740.1"
                     /translation="MIELNNLFITFNKGTAIENPVLRGLSLKVEQGEFVSVIGSNGAG
                     KSTLLNAISGDCAVDSGEILIQGNKVNQSTTWQRANQVARVFQDPMAGTCESLTIEEN
                     MALAYQRGRKRGLGFAIKRQMRELFKDKLALLGLGLENRLTDQMGRLSGGQRQAVSLL
                     MASLQPSNILLLDEHTAALDPKTTDFVLELTNKIVREQKLTTLMVTHSMRQALDYGDR
                     TVMLHQGQVAFDVSGEQRQKMDVPDLLQLFQQSRHEQLSDDGLLLGN"
     gene            7490..7711
                     /locus_tag="PXE26_001148"
     CDS             7490..7711
                     /locus_tag="PXE26_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593741.1"
                     /translation="MLSIFKTPVEKETLDDWAKISVDVAKVAILAIPVILFGKEPTLI
                     KLTNLALLVLSIYVFLTLGRKLRQLKEVL"
     gene            7894..9819
                     /locus_tag="PXE26_001149"
     CDS             7894..9819
                     /locus_tag="PXE26_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HDL5593742.1"
                     /translation="MTKYDDKIQHAFSENGLLSQNISGFRPRQAQLEMAQVVAKAVKF
                     ATPVVVEAGTGTGKTFAYLVPALLSGKKTILSTGSKNLQDQLFNRDLPTIQKALKYKG
                     KIALLKGRANYLCLERLDQVTAMGVLGDKSVLTDLKKVSKWQNATKTGDLSECITIAE
                     DSPILPQLVSTTESCLGSDCPHFKDCYVVQARRKAMEADVVVVNHHLFCADMAVKKTG
                     FGELIPEAELVIFDEAHQLPDIASQYFGQSLSSRQLFDICKDTNIVYRTELKDLSQLG
                     KAADHLTKVVQDFRLLMGGEGQIRGNLRELFRDKKVVDGLVKVAENIDFLSEVAKKSL
                     GRSETLDKIFERLAEVKVQLKKLMDTSVTGYCYWYEANGRSFGLHITPLMVADKFGEQ
                     LKNQQIGWVFTSATLEVGGKFDHFCQRLGIENAEQLVLQSPFDYQHQSLLCVPRYLPD
                     TNKSNTLTALGQLLKPVIEANKGRCFLLCTSYYMMRGLADFLREHSSLNVLLQGETSK
                     SRLLEKFVKEDHSVLVATQSFWEGIDVRGDDLSLVIIDKLPFTSPDEPLLKARMEDCK
                     IQGGDPFNDIQIPEAVITLKQGVGRLIRDVTDRGVVIICDSRLVMRNYGQTFLKSLPP
                     SRRTRDLGNVIQFLKQK"
     gene            9893..10258
                     /locus_tag="PXE26_001150"
     CDS             9893..10258
                     /locus_tag="PXE26_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HDL5593743.1"
                     /translation="MLSTLLRMVASLALLFVMLYLGKLIVYLFPIGIPDSILGMLILF
                     GCLVIGIVKVEWVIPSAKPLTRYITLFFLPICVELIEHLELLRQNLNTFVLATALSTL
                     VSVVAIGVFAQWIFHYKRG"
     gene            10260..10946
                     /locus_tag="PXE26_001151"
     CDS             10260..10946
                     /locus_tag="PXE26_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HDL5593744.1"
                     /translation="MSYLYTVLTVIMFIAGLKISQKLKSSFLNPFLIALALLIGVLLI
                     FNIPYQDYYQGNSPLNNLLGVSVVALAYPFYEQLPHIRKKWRQIVVILLFSTIITMIT
                     GLGFSLLFGASQEILAAILPKSVSMPMAIIITNEINGNVAIAAVGVMIAGLVGSILGF
                     TLLRLAKVRNVMVIGLSMGAASHALGTARCLEHSMKAGSYSSIALVACGVLSSIFAPL
                     IFNVIVTLCY"
     gene            11030..12793
                     /gene="msbA"
                     /locus_tag="PXE26_001152"
     CDS             11030..12793
                     /gene="msbA"
                     /locus_tag="PXE26_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A ABC transporter ATP-binding
                     protein/permease MsbA"
                     /protein_id="HDL5593745.1"
                     /translation="MQEQITQEKDLSTLKTFKRLWPTISPFKAGLITGAVALVLNALV
                     DSSLIYLLKPLLDEGFGQANNDFLKLMAVLVVVFILVRGITNYIASYCLAWVSGKVVM
                     TLRRHIFQHLMYMPVSYFDNNPTGRLLSRVTYDTEMVASSASHSLVTIVREGAYLLSL
                     FVVMIYTSWQLSIVLFVMAPIIGVLISFVSKYFRQLSRNIQSSMGELTVTTEQMLKGH
                     KVVLSFGGQEIEKARFDRVSNDMRRKGMKVVSADGISDGVVQLIASFALSAVLYVATF
                     PEVMSENLTAGSFTVVFSSMMAMLRPLKSLTNVNSQFQRGMAACQTLFEFLDLKTEKD
                     HGLISVAKAEGNVEFKKVSFSYEGKEEKALDNISFTIPKGKTVALVGRSGSGKSTIAN
                     LLTRFYDVTDGQILLDGINIQDYRLKNLREQCSVVSQQVHLFNDTIANNIAYAAIDKY
                     SREEIIAAAKAAHAMEFIEKLENGLDTVIGENGASLSGGQRQRLAIARALLRNSPVLV
                     LDEATSALDTESERAIQSALEVLQKDRTVLVIAHRLSTIEKADEILVVDHGNIIERGS
                     HTELLAQGGAYKQLHSLQFGA"
     gene            12882..13514
                     /gene="lolB"
                     /locus_tag="PXE26_001153"
     CDS             12882..13514
                     /gene="lolB"
                     /locus_tag="PXE26_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein localization protein LolB"
                     /protein_id="HDL5593746.1"
                     /translation="MKKLTKLLSLSALLVLTACNSVLNASTEVQQPTVQIPHDDPQWQ
                     QHLAKLSQIQGYTATGQFGYISPEERFSSHFNWRYTNPIQFGLELSSNLSTKSLKLER
                     NKRGLTVSDNEGNSRSDRDVDALMQEIIGVSFPIDQFAYWVKGLPEKDGNYIVNEKRQ
                     LSQFSYPLNGTLWKASYVEYHEDRVPNLPKLIVLENGTQTLKIRIEKWAY"
     gene            13502..14356
                     /gene="ispE"
                     /locus_tag="PXE26_001154"
     CDS             13502..14356
                     /gene="ispE"
                     /locus_tag="PXE26_001154"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HDL5593747.1"
                     /translation="MGVLMKKVTLPSPAKLNLFLYITNKRADGYHELQTLFQFLDFGD
                     EIEIEITESSEVELINPVEGVATEENLIYRAAKLLQKTTACRQGCRIGIKKNLPMGGG
                     VGGGSSNAATVLVGLNHLWNTELSLEKLAELGLSLGADVPIFVRGMAAFAEGVGEVLT
                     PCDPQEKWYVVLKPEVSISTAAVFTDPNLPRNTPKRPLAELLSLPWENDCEKVVREKY
                     SAVEDLIQELLQYAQFRLTGTGACIFAEFETKAEAEQVFAHKPEAVFGFVAKGQNISP
                     LHQMLFQI"
     gene            14382..15332
                     /locus_tag="PXE26_001155"
     CDS             14382..15332
                     /locus_tag="PXE26_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HDL5593748.1"
                     /translation="MTDIKLFAGNATPELANRIAKHLYTSLGNATVGRFSDGEIQVQI
                     NENVRGGDIFIVQSTCAPTNDNLMELIVMVDALRRASAGRITAVIPYFGYARQDRRVR
                     SARVPITAKVIADFLSSVGVDRVLTCDLHAEQIQGFFDVPVDNVFGSPVLIDDILKKS
                     DLVNPIVVSPDIGGVVRARAVAKLLNDTDMAIIDKRRPKANVSQVMHIIGDVADRDCI
                     LVDDMIDTGGTLVKAAEALKERGARRVFAYATHAVFSGTAAQNLANPALDEIVVTDTI
                     PLSNEIKALNKVRVLTLSGMLAEAIRRISNEESISAMFDA"
     gene            15410..16420
                     /gene="pyrD"
                     /locus_tag="PXE26_001156"
     CDS             15410..16420
                     /gene="pyrD"
                     /locus_tag="PXE26_001156"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HDL5593749.1"
                     /translation="MYSLIRKLLFALDTEKAHQFSIQALALAGKSPFSILPTPDNPTQ
                     VMGLTFKNPIGLAAGADKNGEAIDGFGKLGFGFIEVGTITPLAQDGNPKPRQFRIVDA
                     EGIINRNGFNNKGVDVLVENVKNATYSGILGINIGKNAVTPIEHSFDDYQICLRKVYQ
                     YADYVAVNISSPNTKNLRSLQYGEALDDLLRNLKNEQAQLSQKMGKYRPLVLKIAPDL
                     TDEEIVSVADSLIRYQIDGVIAGNTTLSRESIAGLPYSEQLGGLSGKPLHSLSTRLIS
                     KLSAELGERIPIIGCGGVHSLESGQEKVNAGASLLQVYSAMIYQGPSLIQTLAKHLQL
                     NS"
BASE COUNT         4754 a         3126 c         3824 g         4820 t
ORIGIN      
        1 gttccctatt attttgagta aggtaggggc gctttatatg agtagctttt tatttcatcg
       61 aaatgcggtg tatggaaccc atgagctact taagtcaata ctttgattag aacggaatat
      121 catcatcaaa attgttcatt gccggctcag gctgtggtgc cggtttagat tgcggtgcag
      181 cactttgggt ttggttgtaa ccataattgc tgttgccttg attgtagcta ttacccgcag
      241 gagcagaatt tccccaaccg ccttgctgac cgcccatatc attaccttga cggctgccga
      301 gcatttgtag cacatcgcct tgaatttcgg tggtgtaacg atcttgcccg ttttggtctt
      361 gccatttacg ggtttttaaa cgtccttcta cgtaaacttg agagccttta cgtaaatatt
      421 gcccgcatac ttctgcttga cggcggtaga atacaatacg atgccactcg gttacttcac
      481 ggcgtgcacc ggtgttttta tccgtccagc tttctgaggt tgccacacta atatttgcaa
      541 ccgcttcgcc atttggcatt gtacgcattt cagggtcgtt acctaaatta ccgacaataa
      601 ttactttatt gataccagcc ataaaatcct ctgtttgata aattaaacta aaatttgcta
      661 agtattctac ctgaaaatcc aaaagatgaa caccaaaaaa ctgatatttt gtacagtttt
      721 attaaaatat gcgataatga tcgaaaattg agaaaatagc actggacatt aaaaatatgc
      781 aacatatcga tattcgtgga gcaagaacac acaacttaaa aaacatcaat ttaaccttgc
      841 cgagagataa attcattgta attaccgggc tttccggctc gggcaaatcg tctctggcgt
      901 ttgatacgct ctatgcggaa ggacaacgcc gttatgtaga atcactgtct gcatacgccc
      961 gccagtttct ctccttaatg gaaaagcctg atgtggatca tattgaaggg ctttcccctg
     1021 cgatttcgat tgagcaaaaa tcaacctctc acaacccacg ttcgaccgta ggaacggtaa
     1081 cggaaattca cgactattta cgtttattgt ttgctcgagt gggcgagcct cgttgccctg
     1141 accacgatgt gccattggct gctcaaacta tttcgcagat ggtggatcga gtattggaag
     1201 aaccggaagg aaaacggttg atgctacttg cccctgtggt gaaagagcgt aaaggcgaac
     1261 acgtaaaatt attggaaaat ttgaccgcta gtggctattt gcgggctaga attgacggtg
     1321 aaatttgcga tttatccgac ccaccggcat tagaattaca gaaaaaacac accattgaag
     1381 tggtggtgga tcgctttaaa gtaagggctg atctagccac ccgtttggcg gaatcttttg
     1441 aaacagcgtt agatttatcc ggctctaccg caattattgc agatatggac gacccaaatg
     1501 ccgaagaaat tgtgttttcg tccagctttg cttgtccgca ttgtggttac tctttacacg
     1561 aattagaacc acgccttttc tcgtttaaca acccggcagg tgcttgcccg acttgtgatg
     1621 gtttgggcgt tgagcagttt tttgatgcca aaaaagtagt gcaaaatgaa gaggtttcat
     1681 tagccgccgg tgcgatcaaa ggctgggatc gccgcagttt ctactatttt ggcttattaa
     1741 aagccgttgc cgagcattat ggctttgatt tagaaacccc attcgggcag ctaccgaaaa
     1801 aatatcaaaa cattatttta aacggcacta aagaagagat tgagtttgtt tatgtcaatg
     1861 accgaggcga taaggtcaaa cgtaaacacg cttttgaagg ggtgctgaat aatatggctc
     1921 gccgctataa agaaaccgaa tcaaactcgg tgcgtgaaga gttggcgaag tatattaata
     1981 atcgtccttg tatggattgc gaaggctcac ggttacgccg tgaagcccgt tatgtattct
     2041 tagataaaac caatttgccg atggtttcgg aaaaaagtat cggcgaggca ttaacctttt
     2101 ttgaagagct gaaattagcc ggtcagaaag aaaaaattgc tgagaaaatc ctcaaagaaa
     2161 ttcgtgaacg gctacagttt ttagtgaatg tcggcttgaa ttatctttct ctttcccgct
     2221 cggcagaaac cctttcaggt ggcgaggctc agcggattcg ccttgccagc caaattggtg
     2281 cgggtttagt aggggtaatg tatgtgctgg atgagccttc catcggcttg caccaacgag
     2341 acaatgaacg cctactgaat actttggtgc atttacgcaa tttaggcaat accgtgattg
     2401 tggttgaaca cgatgaagat gcgatccgag ccgcagatca tatcgtggat ataggcccgg
     2461 gtgccggtgt acacggtggg caagttatcg cacaaggtac ggcagctgaa attatgcaaa
     2521 ttgaggaatc tattaccgga caattcctct caggcaagca aaaaattgag attccggctc
     2581 agcgtgtgcc ttatgagcca actaaattgc tcaccttatc gggagcaagt ggtaacaact
     2641 tgaaaaaagt gaaattagag attccggttg gtttatttac ttgtatcacg ggtgtatcag
     2701 gttcgggcaa atcaacttta gttaatgaca cactattccc tctggcacag aatgcgttaa
     2761 accgagcgga aaacagcgat gttgctcctt atgaatcgat tgacggctta tcgcattttg
     2821 acaaggtaat tgatattgac caaagcccga ttgggagaac tcctcgctca aatccggcaa
     2881 cttacaccgg attatttacg ccaattcgtg agatttttgc cggcacgcaa gaagctcgag
     2941 ccagagggta taacgtaggg cggtttagct ttaatgtgcg gggcggacgt tgcgaagcct
     3001 gtcaaggtga cggcgtgatt aaagttgaaa tgcacttctt gcctgatgtg tatgtgcctt
     3061 gcgatcactg taaaggcaaa cgctataacc gtgaaacctt ggaaattcgc tataaaggca
     3121 aaactattca ccaagtgtta gagatgacgg tggaagaggc gagagaattt tttgccccta
     3181 tgccgatgat tgcccgcaag ttgcaaacct tgatggacgt ggggttatct tatatccgtt
     3241 tagggcaatc ttctactacg ctctcaggcg gtgaagccca acgggtgaaa ttggcgaccg
     3301 agctttccaa acgagacacc ggcaaaacgc tctatatttt agatgaaccg accaccggct
     3361 tgcattttgc cgatattaaa cagttactcg gcgtgctaca tcgcctgcgt gatcaaggca
     3421 atacgattgt ggtgatcgaa cataatttag atgtgattaa aaccgcagac tggattgtcg
     3481 atcttggccc tgaaggtggc agtggcggcg gtgaaattat tgctaccggc acaccggaag
     3541 aagtggcaaa agacaaacgt tctcacaccg cacgcttctt aaaagagatt ttggctaaag
     3601 gctaacgttc aacacaagcg gtcatatttt cggaaaatgt tgcaatttgc aaaaagttgg
     3661 aaaatatgac cgcttgtttt atatccggag ttattcctag ttagcctgtc tgattttgtc
     3721 gaaggcagat tcaagatcgc tactgaattg aatttgcggg atttcgttta ccgttttttg
     3781 tgagcggact agcattctca tcggctgaaa ttgcacatta cagagatgaa gttgttgatg
     3841 tggcaacata tgctgtacaa agcgggttag ggcgtgaatg ccaccagcat ctaatactgt
     3901 aacggcatcg cattgcagca caatatgttt aatttggtga tcggtatgta cggttttatt
     3961 gtgcagatcg gcaaagagat tatcggcggc agcaaaaaat aacggaccgc tgatccgata
     4021 aaccaacaca tcgttcaaat cggttgggtg agccatttca aaggatttag tcatttctgc
     4081 aatagtacgg ataaatagca ggcttgccag taacacccct accgtaatgg caattaccat
     4141 atcaaataat accgtgaggg taatgcaagt cagtaaaacc gcaatttcat ttttacctga
     4201 acggcgggta agttgaatga tttgtggaat atctgccata ttccaagcta ctaccaataa
     4261 tagtgcagcc attgaggaaa gaggcaaata ggaaagtgct ttagccaaaa agagtagggc
     4321 aaataaaacc aacaaggcgt gaaccacact agaaatgggg gaaactgccc cggaacgaac
     4381 attggcagcc gatctcgcaa tcgctgctgt ggcggtaatt ccccctaaaa atggcgaggc
     4441 aatattacct aagccttggg ctaatagttc gttgttagag tggtgcttgg tatctgtcat
     4501 attatcgcac actaccgcac ataataacga ttcgatagcc ccaagcattg ccattgaaaa
     4561 ggcagccggt aataaggctt gaatggtggt taagttccaa tctatccgat tcccctctgc
     4621 attcgggaga ttccaaggta acacaaattc aggtaatacg cttgggatac catacccagt
     4681 ggtgccgtca gagagcgtgt agtggaatgc tgagccgata gtggcaacgt tttgtccgaa
     4741 atgaatcagc agtaatgata acagcgtgcc gataaagacg gcgggtaaat gcccgggaat
     4801 aggcaaccgt agcttgtgcc aacgagttaa aaccaacaat gttacgacac ccactaaggt
     4861 gtcagcccaa tttatggttg gcaatgctga aaaaatagcc tctagcttgc caagatagtg
     4921 ttcaggcatt ttttcaatgc ttaagcccag aaaatctttg atttgcaagg tggcgatcac
     4981 aataccgatg ccacaggtaa aacccagtgt gacaggtaga ggaatgtatt caattaagcg
     5041 tcctaatcgg agtaacgcca tcaatactaa aattcctccg gaaagcattg ttgccatgag
     5101 taatccactt aagccaaact gctgcgtgac ggggtataga atcaccacaa aagcggctgt
     5161 tgggcctgaa atattaaatc ttgaaccgcc tgttagggca atcacaatcc cggcaacaat
     5221 cgccgtatat aaaccgtgct gtggtggcac accgctggca atcgccaacg ccatagataa
     5281 cggaatagca ataacgccaa cggttaagcc tgaaataata tctctgatta aatgttgttt
     5341 accataacct gcattgagag catcttttaa tgcactaaaa ggcttgacgg caagaaaagc
     5401 atttttagtt aaaaaccatt tatttaacat agaatgttcg agtgaagaga atgtttcgct
     5461 tattttactg caatgaataa aattaaattt gagctaacgc aagaaaaagc aggaaagacg
     5521 aaatatgttg gagacaagcg gttgttttag gcgaaaaatt tgcaaataca aataattagc
     5581 tgattttatt ttgaaaatag cgtaaaatgc cactttaatt tgtactacta tagtagtgca
     5641 tttgtgtgat ttcattaact ataataaaca aatggacagt cttattcatt ttttgagtgc
     5701 ctttttaact aatatcactt ggattggggc gttagagctg gggttaattt attcccttgt
     5761 tgcccttggg gtattaattt cttataaaat tctggatttt ccggatctga ccgcagacgg
     5821 cagtttccct ttaggagggg cggtgtgtgt gatcagcatt ttgaatcaag ttgatccttg
     5881 gctggcaact ttatacggca cgcttgccgg agcagtagcc ggtatggtta ctgcaagttt
     5941 gcatatcggc tttaaaatcg aaaaattgct tgccagtatt ttaatgatga tcgcactcta
     6001 ttcgattaat ctacgcatta tgggaatgcc gaatattgct attttaggcg aaaccacgat
     6061 ttacgatgta atgccgattg aaagcgatct acagttagcc ttagtacgat tagtgatggc
     6121 attgctggtt gttattatcg taaaaggttt gtttgacctc ttttttgcga ccgaaatcgg
     6181 tttggctgtg cgggcaaccg gtactaatag tcgaatggcg aaagcacagg gtattgcgat
     6241 taataaaatg acgattttag ggatggcgat ttctaatgcg ttaattgcct taggtggtgc
     6301 tttgtatgtg caaagcaacg gtggtgtaga tatttcgatt ggggtaggaa ctatcgtgat
     6361 tggcttggcg gcggtaatta tcggggaagc aattttttcg gtaaaacgga ttatttggct
     6421 tacctttgcg gtgattattg gctcaattct ttatcgtttc ttcatcgcac tagcattaaa
     6481 taacgaaact ttaaacggca ttggctttgg cccgcaagat ctgaatttaa ttacggcgtt
     6541 attggtggtg attgtattag cggttcctcg aattaaacac aaattgctcg gtaagcgagg
     6601 ttaatatgat tgaactcaat aacttattta ttaccttcaa caaagggaca gcaattgaga
     6661 accctgtgct gagaggctta tccctaaaag ttgagcaagg cgaatttgtg tcggtaattg
     6721 gtagcaatgg ggcgggtaaa tctaccttat taaatgcgat cagtggtgat tgtgcggtgg
     6781 actccggtga gattttaatt caaggaaata aggtaaacca atccaccact tggcaacggg
     6841 caaatcaagt cgcccgagtt ttccaagacc cgatggctgg cacttgtgaa agtttaacga
     6901 ttgaagaaaa tatggcactg gcttaccaac gtggacgtaa acgtgggttg ggctttgcga
     6961 tcaaacgcca aatgcgagag ttattcaaag acaaacttgc tttgttaggg ctaggtttgg
     7021 aaaatcggct tactgatcaa atggggcgtt tatcaggcgg gcaacgccaa gcggtgagct
     7081 tgctgatggc atcacttcag ccgtctaata tcttattgtt agatgaacac accgcggcac
     7141 tggatccgaa aaccaccgat tttgtgcttg aacttaccaa taaaattgta agagaacaga
     7201 aattaaccac gctaatggta acgcattcaa tgcggcaagc ccttgactat ggcgatagaa
     7261 ccgtgatgtt acaccaaggg caagtggcgt ttgatgtttc gggcgagcaa cggcaaaaaa
     7321 tggacgtgcc ggatctgtta caacttttcc aacaaagtcg ccacgagcag ttgagtgacg
     7381 atggattatt actcggcaat taattttgcg atctgcatcg aaaaaatgaa tttctccttt
     7441 tgtttttggc tgtcaaattt taaataataa gcccaaaagg aggtattcaa tgttaagcat
     7501 tttcaaaaca ccggtagaga aagaaacgct agacgattgg gctaaaattt cggttgatgt
     7561 agcgaaagtt gcgattttgg caattcctgt tatacttttt ggcaaagaac caacgttgat
     7621 taaattgact aacttagcat tattggtatt gagtatttat gtttttttga cgcttgggcg
     7681 aaaattacgg cagctaaagg aggtgttgtg atggaactag gctggaattt aaccataggt
     7741 ttgctaattt taaacgtctt tgcgtttgct tggctttata ttattaaccg gatttctaaa
     7801 gaacaattat ccaaaaatca ataatattta atttttcaca agcggttgtt tttgcaaaat
     7861 attttgtaaa ttcgaccgct tgcctgtttt taaatgacaa aatacgacga taaaattcag
     7921 catgcattta gcgaaaatgg gttgctcagc caaaatatca gtggatttcg accacgccaa
     7981 gcacagcttg aaatggctca agtggtcgca aaagcagtaa aatttgcgac acctgttgtg
     8041 gtagaggcgg gaaccggcac aggcaaaacc tttgcttatc ttgtgccggc actactttca
     8101 ggcaagaaaa ctattctttc gacaggttct aaaaacctgc aagatcaact ttttaatcga
     8161 gatcttccca ctattcaaaa agccctgaaa tacaaaggca aaattgcgtt actcaaaggg
     8221 cgtgcgaact atttgtgttt agagcgttta gatcaagtga ccgcaatggg cgtacttggg
     8281 gataaatccg ttcttaccga tttaaaaaaa gtcagtaaat ggcaaaatgc cactaaaaca
     8341 ggggatttaa gtgaatgtat taccattgcc gaagatagcc cgattctacc gcagttagtt
     8401 agcaccaccg agagttgctt aggctcggac tgcccgcatt ttaaagattg ttatgtggta
     8461 caagcccgcc gtaaagcgat ggaggcagac gtagtggtgg taaaccatca cctattctgt
     8521 gctgatatgg cagtaaaaaa gaccggtttt ggtgagttga tccctgaagc tgagctggtg
     8581 atctttgatg aagctcacca actgccggat attgccagcc aatattttgg gcaatcgctt
     8641 tcttcccgcc agttatttga tatttgtaag gataccaata ttgtttaccg cactgaactc
     8701 aaagatctgt ctcaattagg caaagcggct gatcacttga cgaaagtagt gcaagatttc
     8761 cgattattga tgggcggaga agggcagatt cgaggcaatt tgcgagagtt atttcgtgat
     8821 aaaaaagtgg tcgatggctt ggtaaaagtg gctgaaaata ttgatttttt aagtgaagtg
     8881 gcgaaaaaat cgctggggcg gtcggaaacg ttggataaaa ttttcgagcg gttagcagaa
     8941 gttaaggttc aacttaaaaa attaatggat actagtgtga caggctattg ttactggtat
     9001 gaggcgaatg gacgatcctt tgggctgcat attacgccgc ttatggtggc agataaattt
     9061 ggtgaacagt tgaagaacca gcaaattggt tgggtgttta cctcagccac actcgaagtt
     9121 gggggcaaat tcgatcattt ttgtcaacgg ctgggcatcg aaaatgcgga gcagttggtg
     9181 ttacaaagtc cgtttgatta ccaacatcaa tctttactct gtgtgccccg ctacttgccg
     9241 gataccaata aatccaatac tttaactgct ctcgggcaat tattaaaacc ggtgattgag
     9301 gcgaataaag ggcgttgttt cttgctttgt acttcctatt atatgatgcg aggtttagcc
     9361 gactttttac gcgaacacag ttcgctgaat gtgttattgc aaggcgaaac cagcaaaagc
     9421 cgtttattgg aaaaatttgt gaaagaagat cacagcgtgt tggtggcgac ccaaagtttt
     9481 tgggagggga ttgatgtgcg aggcgatgat ttatcgttgg tgattattga taaattgccg
     9541 ttcacttcac cggacgaacc attactcaaa gcccgaatgg aagattgtaa gatacagggc
     9601 ggtgatccgt ttaacgatat tcaaattccc gaagcggtga ttaccctcaa acaaggtgta
     9661 gggcgtttaa ttcgtgatgt gaccgataga ggtgtagtga ttatttgtga ttcccgtttg
     9721 gtgatgcgaa attatgggca aactttcttg aaaagtttac cgccgtctag acgcactaga
     9781 gatttgggga atgttattca atttttgaaa caaaaatagg gttacaagcg gtcagatttc
     9841 tgcagatttt tgcaaaaaaa cggataaaaa taaccgcttg ttgaggagtt atatgttgtc
     9901 tacattgctg cgtatggttg cttctttggc attgttattt gtgatgcttt atttaggcaa
     9961 gttaatcgtt tatctattcc ccatcgggat cccggatagt attttaggta tgcttatctt
    10021 attcggctgc ttggttatcg gcattgttaa agtggaatgg gtgataccga gcgcgaaacc
    10081 gctcacacgt tatataacac tatttttcct tccgatttgt gtcgaactca tcgaacatct
    10141 tgagctgtta cgccaaaatc tgaacacttt tgtattagca acggcattaa gcaccttagt
    10201 ttctgtggtc gcgattggcg tgtttgcaca gtggattttt cattacaaga gagggtaaaa
    10261 tgagctatct ttacactgtg ttgacggtaa tcatgtttat tgccggtttg aaaatcagcc
    10321 aaaaactcaa gagcagtttt ctgaaccctt tcttaattgc actcgctttg ctaattggtg
    10381 tattactgat ttttaatatc ccttaccaag actattatca aggtaattcc cccttgaata
    10441 acttacttgg cgtttctgtt gtggcacttg cttacccttt ttatgaacaa ttaccccata
    10501 tccgtaaaaa atggcgacag attgtcgtga ttttgctgtt tagtaccatc attacgatga
    10561 taaccgggct tgggttttca ttattatttg gggcaagcca agagatctta gccgccattt
    10621 tgcctaaatc ggtatcaatg ccaatggcaa ttattattac gaatgaaatt aatggaaatg
    10681 ttgcaatcgc agcggttggg gtgatgatcg caggcttagt gggatctatt ttaggcttta
    10741 cgcttctgcg cctggcaaaa gtaagaaatg tgatggtgat tgggttaagt atgggagctg
    10801 cttcccacgc attaggcacg gcaagatgct tagagcatag tatgaaagcc ggtagctata
    10861 gttctatcgc attagtggct tgtggtgtgc tgtcttctat atttgcacct ttaatattta
    10921 acgttatcgt cacgttatgt tactaaaaac agtgaaatct caaaccttat ttggtaactg
    10981 gctgaaatca aggtacaata ccgtgatttt tcaatgaaaa tagagaatta tgcaagaaca
    11041 aataacacaa gaaaaagatc tttctacgct taaaaccttt aagcgtttat ggccgactat
    11101 cagcccgttt aaagcgggtc tgattacagg tgctgtcgct ttagtattaa atgcgttagt
    11161 ggattctagt cttatctatc tcctcaaacc cttgctagat gaaggctttg ggcaagctaa
    11221 taatgatttt ctgaaattga tggcggtgct tgtagtagtt tttattttag tgcgcggtat
    11281 taccaattat attgccagtt actgtttagc ttgggtgtca ggcaaggtgg taatgacatt
    11341 acgccgccat atttttcaac atttaatgta tatgccggta agctattttg ataacaaccc
    11401 gaccgggcgt ttgctctcac gagtgactta cgataccgaa atggtggcga gttctgcttc
    11461 tcattcttta gtgactattg tgcgtgaagg ggcttatctg ctgtcattgt ttgtggtgat
    11521 gatctatacc agttggcagc tttctattgt gttatttgtg atggctccta tcattggggt
    11581 actgatcagt ttcgtttcaa aatattttcg tcaattaagt cgcaatatcc aaagttcaat
    11641 gggggagctt actgtcacga cagaacaaat gcttaaaggg cataaggttg tactttcctt
    11701 tggtgggcag gaaattgaga aagcacgttt tgatcgagtc agtaatgata tgcgtcgtaa
    11761 agggatgaaa gtcgtttctg ctgatggcat ttctgatggt gtggtacagc ttatcgcctc
    11821 ttttgcgtta tctgctgtgc tttatgttgc gaccttcccc gaggtgatga gtgagaattt
    11881 aaccgcaggt tcattcacag tagtgttttc ttcgatgatg gcaatgttac gtcctctaaa
    11941 atcactcacc aatgtgaact cgcaattcca acgtggaatg gcagcctgcc aaacgttatt
    12001 tgaattttta gatttaaaaa ctgaaaaaga tcacggctta atctccgttg ctaaagctga
    12061 aggcaatgtg gaatttaaaa aggtaagctt tagttatgaa ggtaaagagg aaaaagcact
    12121 cgataatatt tctttcacca ttcctaaagg caaaacagta gcattggttg ggcgttccgg
    12181 ctcgggtaaa tcaactattg ccaatttgct tacccgtttt tatgatgtga ctgacggtca
    12241 aattttgctt gatggaatta atattcaaga ttaccgctta aaaaacttaa gagaacaatg
    12301 ctcggtggtt tctcaacaag ttcatttgtt taacgatact attgctaata atattgctta
    12361 tgctgcaatc gacaaataca gccgagaaga aattattgct gctgcaaaag ctgcacacgc
    12421 aatggaattt atcgaaaaat tggaaaatgg cttagacact gtaattggtg aaaatggcgc
    12481 aagtctttcc ggtgggcaac gccaacgctt ggcaatcgct cgtgcattac tgcgaaattc
    12541 tcctgtgctt gtgctggatg aagctacctc tgcattagat acggagtcag aaagagcgat
    12601 ccaatctgca cttgaagtgc tacagaaaga tcgtacggtg ttggtcatag cacaccggtt
    12661 atcaacgatt gaaaaagccg atgaaatttt ggtagtcgat cacggaaata ttattgagcg
    12721 tggcagccat acggaattgt tagcacaagg tggggcttat aaacaactcc atagtttaca
    12781 attcggagcc taatttgtag gggagaaata tgtttctccc caattaatga taaaaacagg
    12841 gcgaaaaata tttcgtccct acaataattt atttggatac tatgaaaaaa ctgacaaaac
    12901 ttttatctct tagtgcttta ctggtcttaa ccgcctgtaa ttcggtacta aatgcctcaa
    12961 cagaggtgca acaaccaaca gtacaaattc cgcatgacga tccacaatgg cagcagcatt
    13021 tagcgaaact gagccaaatt caaggctata ctgcaacggg gcaatttggc tatatttcgc
    13081 ctgaagagcg tttttcttcc catttcaact ggcgttatac taatccaatc caatttgggt
    13141 tagagctttc ctcgaatctc tcgactaaat cactgaaatt agagcgtaat aaacgaggct
    13201 taacggtttc ggacaatgag ggtaatagcc gttctgaccg tgatgttgat gcgttaatgc
    13261 aagagattat cggtgtttcg tttcctatcg atcagtttgc ctattgggta aaaggcttgc
    13321 ctgaaaaaga tggcaactat attgtgaatg aaaaacgcca gctgtcgcaa tttagttatc
    13381 cgcttaatgg cacgctttgg aaagcaagct atgtggagta tcacgaagat cgtgtaccaa
    13441 acttaccgaa gctgattgtg cttgaaaacg gcactcaaac gttgaagatc cgcattgaaa
    13501 aatgggcgta ttaatgaaga aagtcacctt acccagcccg gcaaaattaa acctgttttt
    13561 atacattacc aataagcggg cagacggtta tcacgagcta caaacgctgt ttcagttttt
    13621 agattttggt gatgaaattg agattgagat cacagaaagt tcagaggttg aattaattaa
    13681 tccggtagaa ggggtggcaa ctgaggagaa tctcatttac cgagcagcaa aacttttgca
    13741 aaaaacgacc gcttgtaggc aaggctgccg tattgggatt aaaaaaaacc taccgatggg
    13801 cggaggtgtt ggtggtggat cttctaatgc tgcaacagta ttagtcggtt taaatcactt
    13861 gtggaatacc gagctttcat tggaaaaatt ggcagaatta ggcttaagtt taggggctga
    13921 tgtgccgata tttgttagag gtatggctgc ttttgccgaa ggcgtggggg aggtgttaac
    13981 tccttgtgat ccacaagaaa aatggtatgt agtgctaaaa ccagaagtgt cgatttcaac
    14041 cgcagcggtg tttaccgacc cgaatttacc tagaaatacg ccaaaacgcc ccttagccga
    14101 attattatct ttaccgtggg aaaacgattg cgaaaaagtt gtacgagaaa agtattctgc
    14161 ggttgaagat cttatacaag aattgttaca atatgctcag tttaggctaa caggcacagg
    14221 tgcttgtatt ttcgccgaat ttgaaacaaa agcagaagcc gagcaggttt ttgcacataa
    14281 accggaagcc gtcttcggtt ttgtggcgaa agggcaaaat atttcgccat tacatcaaat
    14341 gttattccaa atctaaccat cttaacctta aggatcaatc catgacagat attaaactgt
    14401 ttgcgggcaa cgcaactccg gaacttgcta atcgtattgc aaaacatctt tatacctcat
    14461 taggtaatgc aacagttggt cgttttagcg atggtgaaat tcaagtacaa atcaatgaaa
    14521 atgtgcgtgg aggcgatatt tttattgtgc aatccacttg tgcaccaact aatgataatt
    14581 taatggaatt gatcgtgatg gtagatgcgc ttcgccgtgc atcagctggt cgtattaccg
    14641 cagtgattcc gtatttcggt tatgcacgcc aagacagacg cgtgcgttcg gcccgtgtgc
    14701 caattaccgc aaaagtgatt gctgatttct tatccagcgt aggggtagat agagtcttaa
    14761 cctgcgactt acacgcagag caaattcaag gtttctttga tgtgccggta gataacgtat
    14821 ttggttcccc tgtgttaatc gatgatattt tgaaaaaatc cgatttggtc aaccctatcg
    14881 tggtttctcc agatattggt ggggttgttc gtgcaagagc ggtggcaaaa ttattaaatg
    14941 ataccgatat ggcaattatt gataaacgtc gtccaaaagc gaatgtatca caggtaatgc
    15001 acattatcgg tgatgtggct gatcgtgact gtattttagt tgatgatatg atcgatactg
    15061 gtggtacttt agtcaaagcg gctgaagcgc tgaaagaacg tggcgcccgt cgtgtctttg
    15121 cttatgccac acacgcggta ttttcaggca cagcagctca aaatttagcg aatcctgctt
    15181 tagatgaaat tgtagtaact gatactattc cactgagtaa tgagattaaa gcattaaata
    15241 aagtacgtgt tttaacatta tccggtatgt tagcagaagc aattcgccgt attagcaatg
    15301 aagaatccat ttcagcaatg tttgatgcct aatttatgag aaaaaaccca gtcgaaagat
    15361 tgggtttttc atatctgttc actactatat ttagtttaag ataatttgta tgtattccct
    15421 gattcgtaaa ttactttttg cactagatac ggaaaaagca catcaattct ctattcaggc
    15481 acttgcttta gccggaaaat cgcctttttc gattctgcca acacccgata atccgaccca
    15541 agtaatggga ctcacgttta aaaatccaat agggcttgca gccggagcgg ataaaaacgg
    15601 tgaagcgata gatggttttg ggaaattagg atttgggttt attgaggttg ggactattac
    15661 tcctctcgct caagacggaa accctaaacc gaggcaattt cgtattgtag atgcagaggg
    15721 aattattaac cgcaatggat ttaataataa aggcgttgat gttttagtag aaaatgtaaa
    15781 aaatgcaacc tatagtggta ttttaggtat taatattgga aaaaatgcgg ttacaccaat
    15841 tgagcatagc tttgatgact accaaatttg tttgcgtaag gtttaccaat atgctgatta
    15901 tgtggcggtg aatatttcat cacccaatac caaaaatttg cgcagtttac aatatggtga
    15961 ggcattagat gatttgctgc gaaacctcaa aaatgagcag gcacaacttt cgcaaaaaat
    16021 ggggaaatat cgaccgcttg ttttaaagat tgcgcctgat ttaaccgatg aagaaatcgt
    16081 ttctgtagcc gatagtctta ttcgttacca aattgatggg gtgattgccg gcaatactac
    16141 cttgtctcgt gaaagtattg ccggattacc gtattcggaa caactgggtg gattaagtgg
    16201 caagccatta cactcattaa gtacaaggtt aatttcaaaa ttatctgccg agttgggcga
    16261 gagaatacca attataggtt gtgggggagt ccattcgtta gagagtgggc aggagaaagt
    16321 gaatgcaggt gctagtttat tgcaagtcta ttccgcaatg atttaccaag gaccatcatt
    16381 aattcaaacc ttagccaaac accttcagct gaacagttag ggatagattt ctagttaaaa
    16441 atgattggtt aggtttattt ctgtcatctt agtggaatag atggcggtat tagctatcta
    16501 tcaaaaatag acaaaattgc ctat
//
LOCUS       DANLZD010000049        16436 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.049, whole genome shotgun sequence.
ACCESSION   DANLZD010000049 DANLZD010000000
VERSION     DANLZD010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16436)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16436)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16436
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.049"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(139..214)
                     /locus_tag="PXE26_001157"
     tRNA            complement(139..214)
                     /locus_tag="PXE26_001157"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(179..181),aa:Asn,seq:gtt)
     gene            complement(220..295)
                     /locus_tag="PXE26_001158"
     tRNA            complement(220..295)
                     /locus_tag="PXE26_001158"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(260..262),aa:Phe,seq:gaa)
     gene            complement(427..1518)
                     /gene="mltC"
                     /locus_tag="PXE26_001159"
     CDS             complement(427..1518)
                     /gene="mltC"
                     /locus_tag="PXE26_001159"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltC"
                     /protein_id="HDL5593750.1"
                     /translation="MKKYAKYLPMLAIIPFLIACGSNKSTKKPKSTRVDYSKDTNGLD
                     ILAGQFSHNIDDIWGSNELLVASKKDYVKYTDKFYTRSHISFEEGVITIETLGNQNHL
                     RNSIIHTLLMGRDPKGIDLFASGDAPISSNPFLNGQVEDQFGRNITNVAIANDFATYL
                     LQNKVQTRRLKNGQTVSFVTIKMVAGHIEVRARQYLPLVRKMAKQYGIEPSLILGIME
                     VESAFNPYAISYANAIGLMQVVPRTAGRDIFARKGMGGQPSREYLYNPSNNIDAGTLY
                     LTILRDEYLDGIEDPVAKRYAMISAYNSGAGAVLRVFDSDRYSAIDRINDLSSDAVYR
                     ILTTAHPSSQARNYLRKVTTAREKYRNIR"
     gene            complement(1535..1804)
                     /locus_tag="PXE26_001160"
     CDS             complement(1535..1804)
                     /locus_tag="PXE26_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HDL5593751.1"
                     /translation="MARTVFCEYLKQEAEGLDFQLYPGELGKRIFDSISKQAWSEWIK
                     KQTMIVNEKKLSMMNPEHRKLLEQEMVNFLFEGKEIIIEGYKPVE"
     gene            complement(1808..2953)
                     /gene="mutY"
                     /locus_tag="PXE26_001161"
     CDS             complement(1808..2953)
                     /gene="mutY"
                     /locus_tag="PXE26_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HDL5593752.1"
                     /translation="MNSNSPFPLAKAKASDPFAKAVLAWFEQYGRKHLPWQQNKTLYQ
                     VWLSEVMLQQTQVATVIPYFARFMERFPTVIDLANASIDEVLHLWTGLGYYARARNLH
                     KAAIQIRDEFGGEFPTRFDDVLALTGVGRSTAGAILSSVLDAPHPILDGNVKRVLSRY
                     FAVEGWAGEKAVENRLWQLSESVTPDTQVADFNQAMMDLGAMICTRTKPKCLLCPLQE
                     NCKTNAMQAWDSFPAKKPKKTLPERQTYFLVLKSGSKVLLQKREAKGIWGGLFVFPQF
                     ESLEALKRSDFMQNLQISQQLTAFRHTFSHFHLDITPVLVETDLKKTSENSPLVVEEK
                     AGNYLSKVSSNADYWYDLHQHNEVGLATPVKRILDELAFSVKNEIKD"
     gene            3037..3429
                     /locus_tag="PXE26_001162"
     CDS             3037..3429
                     /locus_tag="PXE26_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL5593753.1"
                     /translation="MKSPILGFHHIALIVSDYEKSKHFYTRILGAEIIAETYREQRAS
                     YKLDLRFKDGSQIELFSFPETPPRFTSPETCGLRHLAFRVENIEYAIAFLEQHQLPHE
                     GIRIDEITGKRFTFFRDPDDLPLEFYEV"
     gene            3430..4299
                     /locus_tag="PXE26_001163"
     CDS             3430..4299
                     /locus_tag="PXE26_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL5593754.1"
                     /translation="MLYLLIATLIWASSFIVGKVAISAFDPVQIMQIRLTLAAFIALP
                     FFIPAYKKIQKNQHIKVWLISFLTFPLYVILQFSGLKLTSAASAVALLGLNPLLTVLV
                     GYFCFKKQATRLDFILSLFACLGILIMASGSDDSGSINVLGLLLVTLGSLSFIVGMYL
                     SKEILQSVKVIDLTKIMLVQGAITALPITLLFAENWQLPTSLSAWASVAYLGIICTSL
                     AILLWNKGISQSSPILAGILLALEPVFGLLMALVFLSEQLSLVTWVGIIIVICTALLS
                     VLLPMMKRYKRLI"
     gene            4315..5028
                     /gene="sfsA"
                     /locus_tag="PXE26_001164"
     CDS             4315..5028
                     /gene="sfsA"
                     /locus_tag="PXE26_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HDL5593755.1"
                     /translation="MKFPPLSHGILLRRYKRFLADIQLPNGEQITLHCPNTGAMTGCA
                     NPGDTVWFSTSHNPKRKYAHTWELTQTQAGDFICVNTLRANQLVQEALENQWISELAD
                     YQHILPEQKYGSENSRIDFLLKSDLLPDCFVEVKSTTLLTENGVGMFPDAKTERGQKH
                     LRELTKIAEQGLQAVIFFAILHTGIERFEVAKQIDPKYAELFAQAIAQKVQVLSYKMA
                     ISLENGQPIAATLTKKCEF"
     gene            5089..5610
                     /gene="hslV"
                     /locus_tag="PXE26_001165"
     CDS             5089..5610
                     /gene="hslV"
                     /locus_tag="PXE26_001165"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HDL5593756.1"
                     /translation="MTTIVCVRKDGKVAIGGDGQATLGNCIEKGTVRKVRRLYKDKVV
                     TGFAGSTADAFILRDLFEKKLELHQGHLVKSAVELAKEWRTERALRRLEAMMIVANDS
                     EFLLVSGSGDVIEPEQDVLAIGSGGNYAKAAALALLRTENNLSAKEIVAEALKIAGDI
                     DIYSNYNHVIEEV"
     gene            5867..7192
                     /gene="hslU"
                     /locus_tag="PXE26_001166"
     CDS             5867..7192
                     /gene="hslU"
                     /locus_tag="PXE26_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase ATPase subunit"
                     /protein_id="HDL5593757.1"
                     /translation="MMSMTPREIVSELDAHIIGQKDAKRAVAIALRNRWRRMQLPEDL
                     RQEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD
                     LADVSMKLVRQQAVEKNKMRAQDAAEDRILDVLLPPAKDQWGNVQESDNNSTRQTFRK
                     KLREGQLDDKEIEIDVAAQVSVEIMTPPGMEEMTSQLQSLFEGMSPSKTKKRKMKIKD
                     ALKVMLDEEAAKLVNPEELKQQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQ
                     RDLLPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDLLPELQGRLPIRVELKSLT
                     KEDFERILTEPNASLTLQYRELMKTEGVEIEFTKDGISRIAESAFRVNEKTENIGARR
                     LHTVLERLMDGISFDASERRGEKIIIDENYVSEALNDVVENEDLSRFIL"
     gene            7268..8146
                     /locus_tag="PXE26_001167"
     CDS             7268..8146
                     /locus_tag="PXE26_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF535 domain-containing protein"
                     /protein_id="HDL5593758.1"
                     /translation="MKNLYKWPAAQSLYPNQGKKSYAGKRFRYRLRSWLHHSKIKQFE
                     QFVTQNPQLIPLLNARPNYSYPVAHRFLDKRFSAKQRLQKITDNLLFLPQKLAHLPPL
                     WEQAVNFGEIIADFELWLNINEHQPMEGFWALELRHRPTNQLVYLLTFGKLDEALLIA
                     VIQGPNFEGSKELVKQLTKSCHGLRPAYLMVETMKALTAVLGYQSLLGIPQKYQNKSR
                     WVQSKRYVVDYDAIFAESGGKPGNYWQLPLELESKKIDEIPSKKRSMYRKRYEMLANL
                     KQTMELMLKTYTGLNG"
     gene            complement(8216..8932)
                     /locus_tag="PXE26_001168"
     CDS             complement(8216..8932)
                     /locus_tag="PXE26_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5593759.1"
                     /translation="MKKTLLTLLFGCVVTAQAQDIKFVMEPSYPPFEMTEEKGEIIGF
                     DVDIANAICKEMNANCTFHSQPFDSLIQSLKQKQFDAAISGMGITEPRKKQVLFSEPY
                     FPSSAAFIAKKDTDFAKVKTIGVQNGTTYQHYLAKEKKEYNVKSYASYQNAILDVQNG
                     RIDAIFGDVPVLAEMARKHEGLDFVGEKINNPNYFGDGLGIATHLKNQVLVDQFNAAL
                     KTIKENGEYQKIYDKWMGGK"
     gene            9339..9842
                     /locus_tag="PXE26_001169"
     CDS             9339..9842
                     /locus_tag="PXE26_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-activating lysine-acyltransferase"
                     /protein_id="HDL5593760.1"
                     /translation="MNQSYFNLLGNITWLWMNSSLHKEWSCELLARNVIPAIENEQYM
                     LLIDNGIPIAYCSWADLNLETEVKYIKDINSLTPEEWQSGDRRWIIDWVAPFGHSQLL
                     YKKMCQKYPDMIVRSIRFYPKQKELGKIAYFKGGKLDKKTAKKRFDTYQEELATALKN
                     EFNFIKK"
     gene            9858..12719
                     /locus_tag="PXE26_001170"
     CDS             9858..12719
                     /locus_tag="PXE26_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RTX family hemolysin"
                     /protein_id="HDL5593761.1"
                     /translation="MGTRLTTLSNGLKNTLTATKSGLHKAGQSLTQAGSSLKTGAKKI
                     ILYIPQNYQYDTEQGNGLQDLVKAAEELGIEVQREERNNIATAQTSLGTIQTAIGLTE
                     RGIVLSAPQIDKLLQKTKAGQALGSAESIVQNANKAKTVLSGIQSILGSVLAGMDLDE
                     ALQNNSNQHALAKAGLELTNSLIENIANSVKTLDEFGEQISQFGSKLQNIKGLGTLGD
                     KLKNIGGLDKAGLGLDVISGLLSGATAALVLADKNASTAKKVGAGFELANQVVGNITK
                     AVSSYILAQRVAAGLSSTGPVAALIASTVSLAISPLAFAGIADKFNHAKSLESYAERF
                     KKLGYDGDNLLAEYQRGTGTIDASVTAINTALAAIAGGVSAAAAGSVIASPIALLVSG
                     ITGVISTILQYSKQAMFEHVANKIHNKIVEWEKNNHGKNYFENGYDARYLANLQDNMK
                     FLLNLNKELQAERVIAITQQQWDNNIGDLAGISRLGEKVLSGKAYVDAFEEGKHIKAD
                     KLVQLDSANGIIDVSNSGKAKTQHILFRTPLLTPGTEHRERVQTGKYEYITKLNINRV
                     DSWKITDGAASSTFDLTNVVQRIGIELDNAGNVTKTKETKIIAKLGEGDDNVFVGSGT
                     TEIDGGEGYDRVHYSRGNYGALTIDATKETEQGSYTVNRFVETGKALHEVTSTHTALV
                     GNREEKIEYRHSNNQHHAGYYTKDTLKAVEEIIGTSHNDIFKGSKFNDAFNGGDGVDT
                     IDGNDGNDRLFGGKGDDILDGGNGDDFIDGGKGNDLLHGGKGDDIFVHRKGDGNDIIT
                     DSDGNDKLSFSDSNLKDLTFEKVKHNLVITNSKKEKVTIQNWFREADFAKEVPNYKAT
                     KDEKIEEIIGQNGERITSKQVDDLIAKGNGKITQDELSKVVDNYELLKHSKNVTNSLD
                     KLISSVSAFTSSNDSRNVLVAPTSMLDQSLSSLQFARAA"
     gene            12794..14920
                     /locus_tag="PXE26_001171"
     CDS             12794..14920
                     /locus_tag="PXE26_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_063101322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I secretion system permease/ATPase"
                     /protein_id="HDL5593762.1"
                     /translation="MEANHQRNDLGLVALTMLAQYHNISLNPEEIKHKFDLDGKGLSL
                     TAWLLAAKSLALKAKHIKKEISRLHLVNLPALVWQDNGKHFLLVKVDTDNNRYLTYNL
                     EQDAPQILSQDEFEACYQGQLILVTSRASVVGQLAKFDFTWFIPAVIKYRKIFLETLI
                     VSIFLQIFALITPLFFQVVMDKVLVHRGFSTLNIITVALAIVIIFEIVLSGLRTYVFS
                     HSTSRIDVELGAKLFRHLLSLPISYFENRRVGDTVARVRELDQIRNFLTGQALTSVLD
                     LLFSFIFFAVMWYYSPKLTLVILGSLPCYILWSIFISPILRRRLDEKFARSADNQAFL
                     VESVTAINMIKAMAVAPQMTDTWDKQLASYVSSSFRVTVLATIGQQGVQLIQKTVMVI
                     NLWLGAHLVISGDLSIGQLIAFNMLSGQVIAPVIRLAQLWQDFQQVGISVTRLGDVLN
                     SPTEQYQGKLSLPEIKGDISFKNIRFRYKPDAPTILNNVNLEIRQGEVIGIVGRSGSG
                     KSTLTKLLQRFYIPENGQVLIDGHDLALADPNWLRRQIGVVLQDNVLLNRSIRENIAL
                     SDPGMPMERVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN
                     PKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEI
                     VEQGKHHELLQNSNGLYSYLHQLQLN"
     gene            14932..16368
                     /locus_tag="PXE26_001172"
     CDS             14932..16368
                     /locus_tag="PXE26_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_140441352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HDL5593763.1"
                     /translation="MKIWLSGIYEFFLRYKNIWAEVWKIRKELDHPNRKKDESEFLPA
                     HLELIETPVSKKPRLIAYLIMLFLVVAIVLASVSKVEIVATAPGKLTFSGRSKEIKPI
                     ENAIVQEIFVKDGQFVEKGQLLVSLTALGSDADIKKTMASLSLAKLENYRYQTLLTAI
                     EKESLPVIDLSRTEFKDSSEEDRLRIKHLIEEQYTTWQKQKTQKTLAYKRKEAEKQTI
                     FAYVRKYEGATRIEQEKLKDFKALYKQKSLSKHELLAQENKLIEAQNELAVYRSKLNE
                     LENDLLNVKEELELITQFFKSDVLEKLKQHIENERQLRLELEKNNQRRQASMIRAPVS
                     GTVQQLKIHTIGGVVTTAETLMIIVPEDDVLEATALVPNKDIGFVAAGQEVIIKVETF
                     PYTRYGYLTGRIKHISPDAIEQPNVGLVFNATIAIDRKNLTSPDGRKIDLSSGMTITA
                     EIKTGERSVMSYLLSPLEESVTESLRER"
BASE COUNT         5164 a         3206 c         3311 g         4755 t
ORIGIN      
        1 ttcgggcttc gtcaaataca attctcaaaa atttagcgtt tttgaacgca taatactaaa
       61 aattgagcaa tttcttagta gttagccgga aagctcaaaa agaaaaccct gatgattact
      121 catcagggct tcagaatatg gctcctcctg cgggactcga acctgcgaca tatggattaa
      181 cagtccaccg ttctaccgac tgaactaagg aggaattgat ggtgcctcga ggcggaatcg
      241 aaccaccgac acggggattt tcaatcccct gctctaccga ctgagctatc gaggcaacgt
      301 cgttgcgtgg tgcattatgc tgatttcagc ttgcaacgtc aaacgttttt ttgcaaattt
      361 aaaaaaaccg ctgctcaaat gtgctttttt tatacttttc ggctaaaaaa cagcataatt
      421 cacacattaa cgaatattgc gatatttctc tctggcggtg gttacttttc ttaaataatt
      481 tctagcttga gaagatggat gagcagtggt taaaattcga taaaccgcat cagacgaaag
      541 atcgttaatt ctatcaatcg cagagtatcg gtctgaatca aacactcgta ataccgcacc
      601 tgctccgcta ttgtatgcag aaatcattgc atagcgttta gccacaggat cttcaattcc
      661 atctaagtat tcatcacgca aaatagtcaa ataaagcgta cctgcatcaa tgttatttga
      721 tggattataa agatattcac gacttggctg ccctcccata cctttacggg caaaaatatc
      781 acgcccggcg gtacgaggta caacctgcat taagccaatc gcattggcat agctgatggc
      841 ataagggttg aatgctgatt cgacttccat aatccctaaa atcaaacttg gctcaatacc
      901 atactgcttc gccattttac gcaccagcgg taaatattgt ctggcacgta cttcaatgtg
      961 tcctgccacc attttaatcg ttacaaagct cacagtttga ccatttttca aacggcgtgt
     1021 ttgcacctta ttttgcaaca aataagtcgc aaaatcattg gcgatggcaa cattggtaat
     1081 atttcgcccg aattgatctt caacctgtcc gtttaggaaa gggttagagc taatcggtgc
     1141 atcgcctgag gcaaataaat caatcccttt cgggtctctg cccattaata aagtatgaat
     1201 aatcgaattg cgtagatgat tctgattccc taaagtctca atcgtaatca ccccttcttc
     1261 aaacgaaata tggctacggg tgtaaaactt atccgtatat ttcacataat ctttcttact
     1321 ggcaactaac agctcgttac ttccccaaat atcatcaata ttgtgagaaa actgccctgc
     1381 caaaatatcc aaaccattgg tatctttaga ataatctact cgggtagatt ttggcttctt
     1441 agtcgattta ttgctcccac aagcaataag aaacggaata attgccaaca tcggcaaata
     1501 tttagcatat tttttcattg tgatttaacc tttattattc gaccggctta tagccttcga
     1561 tgatgatctc tttaccttca aataaaaaat tgaccatctc ttgttcgagc agtttacggt
     1621 gttcggggtt catcatactg agttttttct cattgacgat cattgtctgt tttttaatcc
     1681 actcagacca cgcttgcttg ctgattgagt caaaaatacg cttacccagc tcccccggat
     1741 aaagttgaaa atctaaacct tctgcctctt gttttaaata ttcgcaaaat acggtacgag
     1801 ccataattta atccttaatc tcatttttca cactgaatgc cagctcatct aaaatacgtt
     1861 taaccggcgt tgctaaaccc acttcgttat gttggtgcaa atcataccaa taatccgcat
     1921 ttgaagatac cttagaaaga taatttcctg ctttttcttc gacaacaagc ggtgaatttt
     1981 cacttgtttt tttcaaatcg gtttctacta aaaccggggt aatatccaaa tgaaaatggc
     2041 taaaagtatg cctaaatgca gttaattgct gtgaaatttg caaattttgc ataaaatcag
     2101 accgcttgag agcctctaag ctctcaaatt gcggaaacac aaataagccc ccccaaatgc
     2161 cttttgcttc ccgtttttgt aacagcactt tcgagccgct tttcagcact aaaaaatagg
     2221 tttgacgctc cggcaaggtt tttttcggtt tcttggcagg aaagctatcc cacgcttgca
     2281 ttgcattcgt tttacaattt tcttgtagcg ggcagagcaa gcacttaggc tttgtacggg
     2341 tgcaaatcat cgcccctaaa tccatcatcg cttggttaaa gtctgccact tgggtatcag
     2401 gcgtcacact ttcgcttaat tgccaaaggc gattttccac cgctttttca cccgcccagc
     2461 cttctactgc aaaatagcgg cttaacaccc gtttgacatt gccatctaaa atcgggtgtg
     2521 gggcatctaa cacagaagac aaaatcgccc ctgcagtact tctgcccact ccggttaatg
     2581 ccaacacatc atcaaatcgg gtaggaaatt caccgccaaa ctcatctcga atttgaattg
     2641 ccgctttatg caaatttctt gcccgagcgt aataacccag ccctgtccac aaatgcaata
     2701 cttcatcaat cgaggcatta gctaagtcaa ttacggtggg aaatcgttcc ataaaacgtg
     2761 caaaataagg aataacggtc gctacttgag tttgttgcaa cattacctcc gacaaccaaa
     2821 cctgatacag cgttttattt tgctgccaag gtaaatgttt ccgcccatat tgctcaaacc
     2881 aagctaaaac agctttggca aacggatcag aagcttttgc tttcgctaaa ggaaatgggg
     2941 aattgctgtt cattaaaaat cttgaaatcc gaaaaataaa ttatcatact gcaagcggtc
     3001 agttttacca aaaattttac acattaagga aaaaagatga aatcgcccat tttaggtttc
     3061 caccacattg cattaattgt ttccgattac gaaaaatcca aacatttcta cacccgcatt
     3121 ttaggggcag agatcatcgc agaaacctac cgagagcaac gtgccagcta taaattagat
     3181 ttacgcttta aagatggctc acaaattgaa ttattcagtt ttcctgaaac gccgcctcgt
     3241 ttcacctcgc ccgaaacctg cgggcttcgc catttggcat ttcgagtgga aaatattgaa
     3301 tatgccatcg catttttaga acaacatcaa ttaccgcatg aagggatccg aattgatgag
     3361 atcaccggca aacgcttcac gtttttccga gatccggacg atctgccgtt agagttttac
     3421 gaggtctaaa tgttatattt actgattgca accctgattt gggcgagttc attcattgta
     3481 ggtaaagtgg cgatttcagc ctttgaccct gtccaaatta tgcaaattcg gctgacgtta
     3541 gcggcgttta tcgctctgcc gttttttatt cctgcgtata aaaaaatcca gaaaaatcag
     3601 cacattaaag tctggctgat tagttttctc acttttcctc tgtacgtgat cttacaattt
     3661 tccggcttga aattaacttc cgcagcaagt gccgtggcac tactcgggct aaacccgctt
     3721 ttaactgtgt tagtcggcta tttttgtttc aaaaaacagg caaccaggct cgattttatc
     3781 ctaagtttat ttgcctgctt ggggatttta attatggcat cgggtagcga tgatagcggt
     3841 tcaatcaatg tattaggatt attgcttgta accttaggca gtttaagttt tattgtggga
     3901 atgtacctca gcaaagagat tctgcaatca gtaaaagtga tcgatttaac caagatcatg
     3961 ctggtgcaag gggcaattac cgccttacct attaccttac tctttgcaga aaattggcaa
     4021 ctgccaacca gtctctcagc atgggcgagc gtagcatatt taggcattat ttgtaccagc
     4081 ttggcaatat tgttatggaa caaaggcatc agccaatctt cgcctattct tgcaggtatt
     4141 ctactcgcac ttgaaccggt attcggactg ctaatggcat tggtcttttt atcagaacag
     4201 ctcagtttag tgacttgggt tgggattatt attgttattt gcaccgcctt actctccgtt
     4261 ttgctaccga tgatgaaaag atacaagcgg ttaatttaac aggatttttt gcaaatgaaa
     4321 tttccccctc tttcccacgg cattttactt cgccgttata aacgttttct tgccgatatt
     4381 cagttgccaa atggcgaaca aattaccctc cattgcccaa ataccggtgc gatgacaggc
     4441 tgtgccaacc ccggtgatac agtttggttt tccacctctc ataaccccaa acgtaaatat
     4501 gctcacactt gggaactaac ccaaacccaa gcgggggatt ttatttgtgt caataccttg
     4561 agagccaatc agcttgtaca agaagccttg gaaaatcaat ggattagcga gcttgcggat
     4621 tatcagcaca ttctgcctga acaaaaatat ggcagtgaaa acagtcggat tgattttttg
     4681 ctcaaatcgg accttctgcc ggattgtttt gtggaagtga aatctaccac ccttttaacc
     4741 gaaaacggtg tgggaatgtt ccccgatgcc aaaaccgagc gggggcaaaa acatttgcgg
     4801 gagctgacga aaatcgctga acagggctta caagcggtca tttttttcgc tattttgcac
     4861 acaggtattg aacggtttga agtggcaaag cagatagacc ccaaatatgc cgaattattc
     4921 gctcaagcca ttgcacaaaa agtgcaggtt ctctcctata aaatggcaat ttcattggaa
     4981 aacgggcaac ctattgcggc aaccttaaca aagaaatgtg agttttaagc ttgaaaacac
     5041 acagcatatc cccatataag ccaaagtttt taaaaagaag gatttagtat gacaacgatt
     5101 gtatgcgtgc gtaaagacgg aaaagtggct atcggtggtg atggtcaggc aacgcttgga
     5161 aattgtatcg agaaaggcac ggtgcggaaa gttcgccgtt tgtataaaga caaagtggtg
     5221 acaggctttg ccggctcgac cgctgatgcc tttattttgc gtgatttatt cgagaaaaaa
     5281 ttggagttac accaagggca tttagtgaaa tcggcagtgg aactggcaaa agagtggcgt
     5341 accgagcgtg ctttacgccg tttagaagcg atgatgattg tcgccaatga cagcgagttt
     5401 ttattggttt caggttcggg cgatgtgatt gagccggagc aagatgtgct ggcgattggt
     5461 tcaggcggta actatgcgaa agccgctgct cttgcgttat tacgcaccga aaataattta
     5521 tctgcaaaag aaatcgttgc ggaagcgtta aaaatcgccg gcgatattga tatttacagt
     5581 aactacaatc acgtgattga agaagtttag ttaaataact ctctcccctt gtgggacaaa
     5641 tgtttacatt tgaacgttgg ctttgccaac ggctccacag gagcgagcgt agcgagtatt
     5701 gagaccgaaa aatatttcgt tcagaaatat ttttcagaga gaggggttaa tgcaaaacgt
     5761 ttaagaaaaa agaccgcttg ttaccctctc cctgattttt cttctgaaca aagaaaaatc
     5821 tgtccctctc ccacaagggg agagggtaat taatttaagg aataacatta tgtcaatgac
     5881 accccgtgaa atcgtctcag aattagacgc acacattatc ggacaaaaag atgcaaaacg
     5941 tgcggtagca attgctttgc gtaaccgctg gagaagaatg cagttgccgg aagatctccg
     6001 ccaagaagtg acccccaaaa atattttaat gatcggtccg accggtgtgg gtaaaaccga
     6061 aatcgcccgc cgtttggcga agcttgccaa tgcccctttt atcaaagttg aggcaaccaa
     6121 attcactgaa gtggggtatg tgggtaaaga agtggattcg attatccgtg atctagctga
     6181 tgtgtcgatg aaattagtcc gccaacaagc ggtcgaaaaa aataaaatgc gtgcacaaga
     6241 tgcagcggaa gatcgcattt tagacgtatt attgccaccg gcgaaagatc agtggggaaa
     6301 tgtgcaggaa tccgacaata attctacccg ccaaactttc cgcaaaaaat tgcgtgaagg
     6361 gcaattagac gataaagaga ttgaaattga cgtggcagct caagtgagcg ttgagattat
     6421 gaccccgccg ggaatggaag agatgacctc gcaattacaa tcgctgtttg agggaatgtc
     6481 gccaagcaaa accaaaaaac gcaaaatgaa aatcaaagat gcgttaaagg tgatgcttga
     6541 tgaagaagcg gcgaaattag taaatcctga agagctgaaa cagcaagcga ttgaagcggt
     6601 ggaacagcac ggtattgtct ttattgatga gatcgacaaa atctgtaaaa aaggcgagca
     6661 ttcgggtgga gatgtttctc gtgaaggtgt tcagcgtgat ttacttccaa tcattgaagg
     6721 ctcaacggta aataccaagc atggtatggt gaaaaccgac catattctgt ttatctgctc
     6781 gggggcattc caagtggctc gcccgtctga tttactccca gaattacagg gtcgcttgcc
     6841 gattcgtgtg gagttaaaat cgcttaccaa agaagatttt gagcgtattt taaccgaacc
     6901 gaatgcctca ttaaccttgc aatatcgtga gttgatgaaa actgaaggcg tggagattga
     6961 gttcactaaa gacggtatca gccgtattgc agaaagtgca ttccgtgtga acgagaaaac
     7021 cgaaaacatc ggggcaagac gtttacacac cgtgcttgag cgtttgatgg acggcatttc
     7081 gttcgatgcc agcgaacgcc gtggtgaaaa aatcatcatt gatgaaaact atgtttccga
     7141 agcgttaaat gacgtggtgg aaaacgaaga tttaagtcgc tttattttgt agttttaagt
     7201 tatacaagcg gttattttag cgaaaaatct tgcgaattag ccgcttttca tattgttagt
     7261 tgtaaaaatg aaaaatctat acaaatggcc tgctgcacaa tcgctttatc caaatcaggg
     7321 aaagaagtct tacgcaggga aacgttttcg ttaccgtctt cgctcttggt tgcatcattc
     7381 caaaatcaag caatttgagc agttcgttac acaaaatcca caactgattc cgctcttaaa
     7441 tgctcgacca aattacagct accccgtggc tcaccgcttt ttagataagc gtttcagtgc
     7501 aaaacaacgc ttacaaaaaa tcacagataa cctgctgttt ttaccgcaaa aattggctca
     7561 tttaccacct ctatgggaac aagcggtcaa ttttggtgaa attattgcag attttgagtt
     7621 atggcttaac atcaatgaac atcagccgat ggaaggtttt tgggcattag aacttcgcca
     7681 cagaccgact aatcagctag tttatttatt aacatttggt aagttagatg aagccttgtt
     7741 gatagccgta attcaaggtc caaattttga aggttcaaaa gagctggtga aacaattaac
     7801 caaaagttgc cacggcttac gcccggccta tttaatggtt gaaacgatga aggctttaac
     7861 ggctgttctt ggctatcaga gtttactagg cattccacag aaataccaga ataaatcccg
     7921 ctgggtgcaa agtaagcgct atgtagtgga ttatgatgct atttttgcgg aatcgggcgg
     7981 aaagccggga aattattggc agttacccct tgaattggaa agtaaaaaaa tagatgaaat
     8041 tccaagcaaa aaacgctcaa tgtatcgcaa gcgttatgaa atgctagcta atttaaagca
     8101 gaccatggag cttatgctta aaacttatac tggcttaaat gggtaaatca aagaatacaa
     8161 gcggtcaaaa tctgcaaaac tttgcaaaac tttgcaaaaa atgaccgctt acaagttact
     8221 tgccgcccat ccatttatca tagatttttt gatattcgcc attctcttta atcgttttta
     8281 atgctgcatt gaattgatca actaatactt ggtttttcaa gtgagttgca atgcctaaac
     8341 catcaccaaa atagtttgga ttattgattt tctcccctac aaaatctagc ccttcgtgtt
     8401 ttcttgccat ctcagccaat accggcacat cgccaaaaat agcatcaatt cgcccatttt
     8461 gcacatctaa aatagcattt tgataagagg cataagattt cacattgtac tcttttttct
     8521 cttttgctaa atagtgttgg taagtagtcc cattttgcac accaatcgtt ttcaccttag
     8581 caaaatctgt atcttttttc gcaatgaagg cagcagagct tggaaagtaa ggctcgctaa
     8641 ataatacttg tttcttacgt ggttccgtaa tacccatacc tgaaattgca gcatcaaatt
     8701 gtttttgttt taggctttgg attaagctat caaaaggttg gctatggaat gtacaatttg
     8761 cattcatctc tttacagata gcatttgcaa tatccacatc aaaaccgata atttctccct
     8821 tctcttcggt catttcaaat ggaggatagc ttggctccat cacaaatttg atatcttgtg
     8881 cctgcgcagt aaccacacac ccgaataaaa gggtcaaaag tgtttttttc ataaaaagtc
     8941 cctgtgtttt cattataagg attaccactt taacgcagtt actttcttaa aaaaagtctt
     9001 cttttcataa agtttgtttt atgtcataca aacacatcaa attgagatgt agtttctcaa
     9061 tcctcttgat tcctctatct caaaaaaaca acccaaaaga aaaaagaaaa gtatatgtta
     9121 cattaatatt acaatgtaat tattttgttt aatttcccta cattttgtat aactttaaaa
     9181 cactcctttt tctcttctga ttatataaaa gacaaaaaat acaatttaag ctacaaaaaa
     9241 caacaaaaaa caacaaaaaa cacgacaata agatcgagta atgattatat tatgttataa
     9301 tttttgacct aatttagaat aattatcgag tgcaaattat gaatcaatct tattttaact
     9361 tactaggaaa cattacttgg ctatggatga actcctccct ccacaaagaa tggagctgtg
     9421 aactactagc acgcaatgtg attcctgcaa ttgaaaatga acaatatatg ctacttatag
     9481 ataacggtat tccgatcgct tattgtagtt gggcagattt aaaccttgag actgaggtga
     9541 aatatattaa ggatattaat tcgttaacac cagaagaatg gcagtctggt gacagacgct
     9601 ggattattga ttgggtagca ccattcggac attctcaatt actttataaa aaaatgtgtc
     9661 agaaataccc tgatatgatc gtcagatcta tacgctttta tccaaagcag aaagaattag
     9721 gcaaaattgc ctactttaaa ggaggtaaat tagataaaaa aacagcaaaa aaacgttttg
     9781 atacatatca agaagagctg gcaacagcac ttaaaaatga atttaatttt attaaaaaat
     9841 agaaggagac atcccttatg ggaactagac ttacaaccct atcaaatggg ctaaaaaaca
     9901 ctttaacggc aaccaaaagt ggcttacata aagccggtca atcattaacc caagccggca
     9961 gttctttaaa aactggggca aaaaaaatta tcctctatat tccccaaaat taccaatatg
    10021 atactgaaca aggtaatggt ttacaggatt tagtcaaagc ggccgaagag ttggggattg
    10081 aggtacaaag agaagaacgc aataatattg caacagctca aaccagttta ggcacgattc
    10141 aaaccgctat tggcttaact gagcgtggca ttgtgttatc cgctccacaa attgataaat
    10201 tgctacagaa aactaaagca ggccaagcat taggttctgc cgaaagcatt gtacaaaatg
    10261 caaataaagc caaaactgta ttatctggca ttcaatctat tttaggctca gtattggctg
    10321 gaatggattt agatgaggcc ttacagaata acagcaacca acatgctctt gctaaagctg
    10381 gcttggagct aacaaattca ttaattgaaa atattgctaa ttcagtaaaa acacttgacg
    10441 aatttggtga gcaaattagt caatttggtt caaaactaca aaatatcaaa ggcttaggga
    10501 ctttaggaga caaactcaaa aatatcggtg gacttgataa agctggcctt ggtttagatg
    10561 ttatctcagg gctattatcg ggcgcaacag ctgcacttgt acttgcagat aaaaatgctt
    10621 caacagctaa aaaagtgggt gcgggttttg aattggcaaa ccaagttgtt ggtaatatta
    10681 ccaaagccgt ttcttcttac attttagccc aacgtgttgc agcaggttta tcttcaactg
    10741 ggcctgtggc tgctttaatt gcttctactg tttctcttgc gattagccca ttagcatttg
    10801 ccggtattgc cgataaattt aatcatgcaa aaagtttaga gagttatgcc gaacgcttta
    10861 aaaaattagg ctatgacgga gataatttat tagcagaata tcagcgggga acagggacta
    10921 ttgatgcatc ggttactgca attaataccg cattggccgc tattgctggt ggtgtgtctg
    10981 ctgctgcagc cggctcggtt attgcttcac cgattgcctt attagtatct gggattaccg
    11041 gtgtaatttc tacgattctg caatattcta aacaagcaat gtttgagcac gttgcaaata
    11101 aaattcataa caaaattgta gaatgggaaa aaaataatca cggtaagaac tactttgaaa
    11161 atggttacga tgcccgttat cttgcgaatt tacaagataa tatgaaattc ttactgaact
    11221 taaacaaaga gttacaggca gaacgtgtca tcgctattac tcagcagcaa tgggataaca
    11281 acattggtga tttagctggt attagccgtt taggtgaaaa agtccttagt ggtaaagcct
    11341 atgtggatgc gtttgaagaa ggcaaacaca ttaaagccga taaattagta cagttggatt
    11401 cggcaaacgg tattattgat gtgagtaatt cgggtaaagc gaaaactcag catatcttat
    11461 tcagaacgcc attattgacg ccgggaacag agcatcgtga acgcgtacaa acaggtaaat
    11521 atgaatatat taccaagctc aatattaacc gtgtagatag ctggaaaatt acagatggtg
    11581 cagcaagttc tacctttgat ttaactaacg ttgttcagcg tattggtatt gaattagaca
    11641 atgctggaaa tgtaactaaa accaaagaaa caaaaattat tgccaaactt ggtgaaggtg
    11701 atgacaacgt atttgttggt tctggtacga cggaaattga tggcggtgaa ggttacgacc
    11761 gagttcacta tagccgtgga aactatggtg ctttaactat tgatgcaacc aaagagaccg
    11821 agcaaggtag ttataccgta aatcgtttcg tagaaaccgg taaagcacta cacgaagtga
    11881 cttcaaccca taccgcatta gtgggcaacc gtgaagaaaa aatagaatat cgtcatagca
    11941 ataaccagca ccatgccggt tattacacca aagatacctt gaaagctgtt gaagaaatta
    12001 tcggtacatc acataacgat atctttaaag gtagtaagtt caatgatgcc tttaacggtg
    12061 gtgatggtgt cgatactatt gacggtaacg acggcaatga ccgcttattt ggtggtaaag
    12121 gcgatgatat tctcgatggt ggaaatggtg atgattttat cgatggcggt aaaggcaacg
    12181 acctattaca cggtggcaag ggcgatgata ttttcgttca ccgtaaaggc gatggtaatg
    12241 atattattac cgattctgac ggcaatgata aattatcatt ctctgattcg aacttaaaag
    12301 atttaacatt tgaaaaagtt aaacataatc ttgtcatcac gaatagcaaa aaagagaaag
    12361 tgaccattca aaactggttc cgagaggctg attttgctaa agaagtgcct aattataaag
    12421 caactaaaga tgagaaaatc gaagaaatca tcggtcaaaa tggcgagcgg atcacctcaa
    12481 agcaagttga tgatcttatc gcaaaaggta acggcaaaat tacccaagat gagctatcaa
    12541 aagttgttga taactatgaa ttgctcaaac atagcaaaaa tgtgacaaac agcttagata
    12601 agttaatctc atctgtaagt gcatttacct cgtctaatga ttcgagaaat gtattagtgg
    12661 ctccaacttc aatgttggat caaagtttat cttctcttca atttgctaga gcagcttaat
    12721 ttttaatgat tggcaactct atattgtttc acacattata gagttgccgt tttattttat
    12781 aaaaggagac aatatggaag ctaaccatca aaggaatgat cttggtttag ttgccctcac
    12841 tatgttggca caataccata atatttcgct taatccggaa gaaataaaac ataaatttga
    12901 tcttgacgga aaagggcttt ctttaactgc ttggctttta gctgcaaaat cgttagcgtt
    12961 gaaagcgaaa cacattaaaa aagagatttc ccgcttacac ttggtgaatt taccggcatt
    13021 agtttggcaa gataacggta aacatttttt attggtaaaa gtggataccg ataataaccg
    13081 ctatttaact tacaatttgg aacaagatgc tccacaaatt ctgtcacaag acgaatttga
    13141 agcctgctat caagggcagt taattttggt cacgtccaga gcttccgtag taggtcaatt
    13201 agcaaagttc gatttcacct ggtttattcc ggcggtgatc aaataccgaa aaatctttct
    13261 agaaaccttg attgtttcga tctttttgca aatttttgcc ctaattacac cgctattctt
    13321 ccaagttgtt atggataaag tactggtgca tcgaggtttt tcaaccttga atatcattac
    13381 ggttgcctta gctattgtga tcatctttga aattgtacta agtggtttga gaacctatgt
    13441 tttttctcat agcactagcc gtattgatgt tgaattaggc gctaaattat ttcgacattt
    13501 attatcacta cccatttctt attttgaaaa cagacgagtt ggagatacag tcgctagggt
    13561 tagagaatta gatcaaattc gtaatttcct taccggacaa gcattaacct cggtgttaga
    13621 tctcttattc tcttttatct tttttgccgt aatgtggtat tacagcccaa aattaacctt
    13681 ggtaattctt ggttcattgc cctgctatat tttatggtca atttttatta gtccgatttt
    13741 aagacggcgt ttagatgaga aatttgcccg aagtgctgat aaccaagcat tcttagttga
    13801 gtcggtaaca gccatcaata tgattaaagc gatggcggtt gctccacaaa tgacggatac
    13861 atgggataaa cagctggcaa gctatgtttc atcaagtttc cgtgtcaccg tattagcaac
    13921 cattgggcaa caaggtgtac aacttattca aaaaaccgtt atggtgatta acctttggtt
    13981 aggggcacac ttagttattt caggcgatct gagtattggg caattaattg cctttaatat
    14041 gctatcaggg caagtgattg caccggtgat tcggctggct cagctctggc aagatttcca
    14101 acaagttggg atttccgtca ctcgcttagg tgatgtttta aactctccaa ccgaacaata
    14161 tcaaggcaaa ttatcactac cagaaataaa aggcgatatc tcatttaaaa atatccgctt
    14221 tagatataaa ccagatgcac caactatttt aaataatgtg aatttagaaa ttaggcaagg
    14281 agaagtgatt gggattgttg gacgttccgg ttcaggcaaa agtactctga ctaaattact
    14341 gcaacgtttt tatattcctg aaaatgggca ggttttgatt gatggacatg atctagcctt
    14401 agctgatcca aactggctac gccgtcaaat aggtgtagtg ctgcaagata atgtgttatt
    14461 aaaccgcagt atccgagaaa atattgcgct atcagatcca ggaatgccaa tggagcgagt
    14521 aatttatgca gcaaaattag caggggctca cgattttatt tcagaattgc gtgaaggtta
    14581 taacaccatt gtgggtgaac aaggagcggg gctttcaggc gggcaacgcc aacggattgc
    14641 gattgctcga gctttggtaa acaacccgaa aatcctgatt tttgatgagg caaccagtgc
    14701 cctcgattac gaatctgagc atattattat gcaaaatatg caaaaaatat gccaaggcag
    14761 aaccgtgatt ttgattgcac atcgtttatc gaccgtcaaa aatgcggatc gaattattgt
    14821 gatggaaaag ggggaaattg ttgagcaagg caagcaccac gaattactgc aaaacagtaa
    14881 cggactttat tcctacttac accaattaca acttaattaa gaaggaaaac aatgaaaata
    14941 tggcttagtg gtatttatga atttttccta cgctataaaa acatttgggc agaagtatgg
    15001 aaaattcgta aagaattaga ccacccaaac agaaaaaaag acgaaagtga atttttaccg
    15061 gcacatttag aactgattga aaccccggtt tctaaaaaac cacgtctaat tgcttatttg
    15121 attatgctat ttttagttgt ggcaattgtg cttgccagtg taagcaaagt tgaaattgtg
    15181 gcgactgctc ccggtaaatt aacttttagt ggcagaagta aagaaattaa accgattgaa
    15241 aacgccattg tacaagaaat tttcgttaaa gatgggcagt ttgtggaaaa agggcaatta
    15301 ttagtcagct taactgcatt gggttctgat gcagatatca aaaagaccat ggcttcactt
    15361 tctttagcta aactggagaa ctatcgctac caaactttgc ttactgccat tgaaaaagag
    15421 tccttgccgg tgattgattt atctagaacc gaatttaaag attcatcgga agaagatcga
    15481 ctacgtatta aacacttaat tgaggagcaa tacaccactt ggcaaaaaca aaaaacacag
    15541 aaaactttag cgtataagcg taaagaggct gaaaaacaaa caatatttgc ctatgtccgt
    15601 aaatatgaag gtgcaacacg tattgaacaa gaaaaattaa aagactttaa ggcactttat
    15661 aaacagaagt ctttatctaa gcacgaactt cttgcgcaag aaaataaatt aattgaggct
    15721 cagaatgagc tagctgttta tcgctcaaaa ttaaatgaat tagaaaatga tctactcaat
    15781 gtaaaagaag aacttgaatt gatcacgcaa ttctttaaaa gcgatgtgtt ggaaaaatta
    15841 aagcaacata ttgaaaatga acgccaactt cggctcgagt tagaaaaaaa taatcaacgc
    15901 agacaggcct cgatgatcag agcaccggtt tccggtacgg ttcagcaact gaaaattcac
    15961 actataggtg gtgttgttac gactgctgaa accttgatga tcattgtgcc ggaagacgat
    16021 gtgttagagg ccaccgctct ggttccaaac aaagatatcg gctttgttgc agcagggcag
    16081 gaggtgatta ttaaagtgga aactttccct tatacacgct atggttatct aactggtcga
    16141 attaaacata ttagcccgga tgcgattgaa caacctaatg taggcttagt ttttaatgca
    16201 actatagcta tagataggaa gaatctaaca tcgcctgatg ggcgaaaaat tgatttgagt
    16261 tcaggtatga caataactgc tgaaatcaaa accggtgaac ggagtgtaat gagttattta
    16321 ctcagcccat tagaagaatc tgtcacagaa agtttaaggg aacgctaatc gaaccaaaac
    16381 aaagccataa aagccatttt gagcttttat ggctttattt tttagtccac aagcgg
//
LOCUS       DANLZD010000050        16330 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.050, whole genome shotgun sequence.
ACCESSION   DANLZD010000050 DANLZD010000000
VERSION     DANLZD010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16330
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.050"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(256..1389)
                     /locus_tag="PXE26_001173"
     CDS             complement(256..1389)
                     /locus_tag="PXE26_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis PLP-dependent protein"
                     /protein_id="HDL5593764.1"
                     /translation="MTKFNNIETTLVQIGNRTDPRTGAVAMPIILSTAYGRDGLGEST
                     GWDYTRTKNPTRAVLEQGIADLEGGDAGFAMASGMAAIQLVMSLFKAPDEWIISSDVY
                     GGSYRLFDFSHKNHGTLKPVYVNTADLAAIEAAITPNTKAIFVETPSNPLMEECDVAA
                     IAKIAKKHNLMLIVDNTFLTPALFRPIEHGADIVIHSATKYLSGHNDVLAGLIVAKDS
                     DATKVNGQNLTERLFYFQNCAGAVLSPFDSYLAVRGMKTLALRMERHQSNATELAKFL
                     AEQPEIDSVLYSGKSGMLSFRLQKEEWVAKFLKAIKLITFAESLGGAESFITYPATQT
                     HMDIPEAERITRGITNNLLRFSVGLEHVEDIKADLLQAFKQLK"
     gene            complement(1406..2218)
                     /gene="dapB"
                     /locus_tag="PXE26_001174"
     CDS             complement(1406..2218)
                     /gene="dapB"
                     /locus_tag="PXE26_001174"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005696006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HDL5593765.1"
                     /translation="MTLKIGIVGAGGRMGRQLIQAVHNAQGVELGSAFERKGSSLVGS
                     DAGEVAGVGTLGVVISDDVAQNVAGFDLLIDFTRPEGTLEHLDICVAHHKQMVIGTTG
                     FDDAGKAAIKAASEKIGIVFASNYSVGVNLVFKLLEKAAKVMGDYCDIEVIEAHHRHK
                     VDAPSGTALSMGEHIAKTLGRDLKTHGVFERNGITGERKRDEIGFATIRAGDVVGEHS
                     VWFADEGERVEIAHKASSRMTFANGAVRAAKWLNGKQNGLFDMTDVLDLNNL"
     gene            complement(2269..2646)
                     /locus_tag="PXE26_001175"
     CDS             complement(2269..2646)
                     /locus_tag="PXE26_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593766.1"
                     /translation="MGIKVLFGTKISAELQYLPEKDLVKILQFKQHVEIYGLENLAGR
                     NKSSDDVPTNDPYWAEKVAKAQKYSLWHYHIGIPEYDTSQGFGNYTSEYILHYVKGEN
                     FIQIVDFTSHPPFKLPSESYLQN"
     gene            complement(2636..3109)
                     /locus_tag="PXE26_001176"
     CDS             complement(2636..3109)
                     /locus_tag="PXE26_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593767.1"
                     /translation="MMKNLPLSMADTLAVIYPAFDFAADDKPATEQQISLLNFRITMA
                     NQLLIACIETIEKNPNFWAEIDLNDFKKYLNQNKVVIFDTQQYFTDGSRTMAILDNMK
                     SNIRKIEQQLSQATAFNFDLERMKERLNDTFHEVPKDITNVNEFRNWLKGVANGH"
     gene            complement(3177..4265)
                     /gene="rlmM"
                     /locus_tag="PXE26_001177"
     CDS             complement(3177..4265)
                     /gene="rlmM"
                     /locus_tag="PXE26_001177"
                     /EC_number="2.1.1.186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase
                     RlmM"
                     /protein_id="HDL5593768.1"
                     /translation="MFNKLALYCRAGFEKEVAGEITDKAAQQGIFGFANLKENSGYVI
                     FECYQAGEADRLAQALKFEQLIFVRQMLVVGDLLQNLSENDRISPILAQYAELNPRQS
                     SDVFVETPDTNEAKELLTFCRKFTVPLRSALKKQGWLGKSENMQGSVSLHILFTRPGA
                     CYVGYAYNHNKSPFFMGIPRLKFPAEAPSRSTLKLEEAILTFIPQAEEKKRFNDTMVG
                     VDLGACPGGWTYQLVKRGVFVYAVDHGKMAASLHETGRIEHCPEDGFKFQPPKRKQID
                     WLVCDMVEQPIRISKLIAKWLTNGWCRETIFNLKLPMKKRYQEVQLCLNFLEEELTKH
                     GFWFKMQAKHLYHDREEITVHIAVMGQK"
     gene            complement(4265..4657)
                     /locus_tag="PXE26_001178"
     CDS             complement(4265..4657)
                     /locus_tag="PXE26_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HDL5593769.1"
                     /translation="MKNKFVAIAAFSGLFTVAFGAIASHALSAQLSPKALGWIETGIK
                     YQMFHTLAILALGLFQIANFGQNPPVCRAKAFNIIGSNWALGILLFSGNLYLLALNVP
                     TIHWLTPIGGLCFMLGWIALIYISVRKA"
     gene            complement(4764..6165)
                     /locus_tag="PXE26_001179"
                     /pseudo
     CDS             complement(4764..6165)
                     /locus_tag="PXE26_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252330.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
     gene            complement(6320..8677)
                     /locus_tag="PXE26_001180"
     CDS             complement(6320..8677)
                     /locus_tag="PXE26_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HDL5593770.1"
                     /translation="MNTALEKGKFVFLDKPKNTITTAAHWGALNVTVENGKVVKSEGS
                     LAKNHQNELQDVVADQLYSPVRVKYPMVRKGYLEGNKDTTLRGRDKWVRISWDKAFEL
                     VSGEIQRVREQYGSESIFGGSYGWYSSGSLHASRTLLQRYLNVTGGFTNTKGDYSTGA
                     VQVIMPYVLGNIEVYAQQTSWHTIVESTELLVIWSSNPLNTLRIAWTSAEPEGIDYLA
                     KLKASGKRIICIDPVKSETCQFLEAEWLPINTGTDVALILGIAHTLITENKHDHDFLT
                     KYTVGFEQFADYVLGKADNLPKTAEWASQICDIPEEVIKTLANDFVTHRTMLMSGWGL
                     QRLQHGEQSHWALVTLAAMLGQIGLPGGGFGLNYRYSTNGLNVNSGVRLGAINAGKPN
                     PDMPFFPVSRIADALLKPNQPYDYNGQTLHYPNIKLVYWAGGNPFAHHPDTNYLVKAW
                     QQPETMIVNECYWTPTARMADIVLPATTSYERNDLTVAGDYVAKHIIPMKQVVEPQFE
                     AKNDYDIFAELAKRAGKEQAFTEGKSEMEWLKEFYQVAFEAGEKANTPLLDFEAFWAE
                     NKVLSFEAEHQNNTFVRYQDYRTDPIKHKLATPSGKIEIFSETIAKMNYEDCKGHPTW
                     FEHHEYSGKTNEAEPLALVTPHIKYRLHSQLAYSSLRQYYEVNGREPMLIHTKDAADR
                     GITSGDIVRIFNKRGQVLAGAVVTDGIIQGTVALYEGGWYDPQDLGKTDTPLCKNGNP
                     NVLTRNEGSSKLGQGNAPNTTTVQVEKYVGDAPEVTVFKAPFFSE"
     gene            complement(8813..11419)
                     /gene="acnB"
                     /locus_tag="PXE26_001181"
     CDS             complement(8813..11419)
                     /gene="acnB"
                     /locus_tag="PXE26_001181"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014391308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HDL5593771.1"
                     /translation="MENFIENYQQQVDERAALGVVPQPLSAEQTAQLVELLKNPPAEQ
                     AVFLLDLFTNRIPAGVDEAAYVKAAFLADITKGVATSPLISPAHAVKLLGTMQGGYNI
                     ETLLSALDNPELAPIAVEALSKTLLMFDNFHDVKERADQGNPFAQQVLESWANADWFT
                     SRPKLAEKLTVTVFKVTGETNTDDLSPAQDAWSRPDIPLHALAMLKNERDGIFPDENG
                     HTGPIKQLEALKEKGFPLAYVGDVVGTGSSRKSATNSVLWFMGEDIPYIPNKRAGGVV
                     LGGKIAPIFFNTLEDAGSLPIEVDVTNLNMGDVIDIYPYAGKICKHNSDEVLAEFELK
                     TEVLLDEVRAGGRIPLIIGRGLTHKARVALGLPESDVFIKPQSVSESNKGYTLAQKMV
                     GRACGVEGVRPGQYCEPRMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAA
                     YPKPVDVITHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIG
                     ISFPAGSGLVAFAAATGVMPLDMPESVLVRFSGTMQPGITLRDLVHAIPYYAIQQGLL
                     TVEKKGKKNIFSGRILEIEGLEDLKIEQAFELSDASAERSAAACTIKLNKEPIIEYLN
                     SNITLLKWMIAEGYDDKRTLERRIANMQAWLDNPELLEADENAEYAAVIEINLDEIKE
                     PIVCVPNDPDDARLLSQVQGDKIDEVFIGSCMTNIGHFRAAGKLLSQAQGELPTKLWI
                     APPTKMDAGLLTEEGYYSIYGKSGARVEMPGCSLCMGNQARVANNANVVSTSTRNFPN
                     RLGQGANVYLASAELAAVSALLGKLPTPQEYLDYMNNLQKDKDDIYRYMNFDQINSYV
                     KKADNVIVQVAV"
     gene            complement(11439..12686)
                     /gene="icd"
                     /locus_tag="PXE26_001182"
     CDS             complement(11439..12686)
                     /gene="icd"
                     /locus_tag="PXE26_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HDL5593772.1"
                     /translation="MQTQVQIPQGETIQLNQDGSLQVPDNPIIPFIEGDGIGVDVTPA
                     MKAVLDAAVEKAYQGKRKIAWMEIYAGEKANKLYGENTWLPDETLELIRQYHVAIKGP
                     LMTPVGGGIRSLNVAMRQGLDLYNCLRPIRYYDGTPSPVKHPELVDMVIFRENSEDIY
                     AGVEWVAGSPEANKVIEFLQQEMGVKKIRFTEDCGIGIKPVSKQGTQRLVRAALQYVI
                     DNNRKSLTLVHKGNIMKFTEGAFKEWGYQVAEEFGAKLIDKGPWMSLTNPKTGEEIII
                     KDSIADAFLQEILLHPTEYDVIATLNLNGDYISDALAAQVGGIGISPGANIGFEAAIF
                     EATHGTAPKIAGQNKGNPGSLILSGEMMLRHLGWVEAADLVVKAVSKTIANKTVTFDF
                     AEMLEGVTLRSTSEFAQDIIANM"
     gene            12920..14200
                     /locus_tag="PXE26_001183"
     CDS             12920..14200
                     /locus_tag="PXE26_001183"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005762304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HDL5593773.1"
                     /translation="MSKATLTLETGEKLELNMQKGTLGYQTIDIQPFLKHKLFAYDPG
                     LVSTAVCRSNITYVDGDEGVLLYRGYPIDQLAKHSDYLEVGYMLLFGERPTKEEYKDF
                     VQLIKKHTLVHEQLTKFFSGFRRDSHPMAVMCGVSGALAAFYHDAIDVNNQAHRELTA
                     IRLLAKIPTLAAMCYKYSIGQPFMFPQNHLSYAGNFLYMMFATPCEPYEVNPVLERAL
                     DRIFILHADHEQNASTSTVRTAASSGANPFACIAAGIASLWGPAHGGANEACINMLKE
                     IGTVDRIPEFIARAKDKNDPFRLMGFGHRVYKNYDPRAKVMRETCHEVLKELNIDNPL
                     FEVALELERIALSDPYFIEHKLYPNVDFYSGIVLKAIGIPTSMFTVMFALARTVGWIA
                     HWKEMYLQGNIKIVRPRQIYTGHTKRDFEPMDKS"
     gene            complement(14273..15502)
                     /locus_tag="PXE26_001184"
     CDS             complement(14273..15502)
                     /locus_tag="PXE26_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593774.1"
                     /translation="MFQAEPKNGKVTVEVLKQYLIDELKIDEEEIAIVIGNQHELDNI
                     DLFNPQCKINYIITVEALKEGWDCPFAYIFCSVQNVSSSKEAEQLLGRVLRMPYAKHR
                     QIEDLNRAYAPLSSKSFGETARNLQDKLIGMGFEALEVAEMLRIPQQENWIGNEGDLF
                     YTPTTVLALTQLPEMSDLSEAKRSQLKITEQEGHILVQVKGNLSEKLEKALIRTATGK
                     KKEQIEQQLQIHQNRVEILSSPAEKGEIFKVIPQLCMNIQGEFDLADSQVLLDYQSWN
                     LLDYPAKLDGFRLQENSQSFEIDVEDKRVSYHFNQQQLSFSDDWLRNPVKRGFSLPLA
                     HQNFYPDFIVELIDGRILIVEYKGEQLKSNEDSKEKALIGNLWEKLSQGKGLFIMAVK
                     SDENGQDVRTQLLNKLA"
     gene            complement(15469..>16330)
                     /locus_tag="PXE26_001185"
     CDS             complement(15469..>16330)
                     /locus_tag="PXE26_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL5593775.1"
                     /translation="EHSNLRDVPYVCVRIPTGGGKTLLASHSIARIAKQYLDCDFPVT
                     LWPVPSRTIKTQTTEALKNPQHPYRAVLDKTFNREVMVIESEDFDLLRPQDFGNKAIV
                     IVSTIQNFRVENQDGRKIYAFNEKLTAHFERLLPHIQANLEKISTTDLQENGLTSKQT
                     GKIKCSFANLLRAYQPLVIVDEAHNARTSLSFDVLSQLSPSAILEFTATPNTDRKAGS
                     NVLYHVSASHLKAEEMIKLPIVLTEHHNWQQAIDGAVINRGALAQKAQYESEYVRPIY
                     CFKLSRKTAK"
BASE COUNT         4703 a         3706 c         3076 g         4845 t
ORIGIN      
        1 aaaaatttga acaaacgaag cgacagcgtt agcaaaaact taaaatgatg tacggattta
       61 aaaatctgtt cgtttgcttg ttttataagc aaactaattt cgcataatta ttattatgtt
      121 aaatagatag ttaaaataac acatttaatt aaatcttttc gtgtttctct cctcctttat
      181 taaaaaagaa aacggtcaga ttggtaaaat ctatacctaa tatgaccgct tgtgaataca
      241 aaaaaattac ttcaattact tcaactgttt aaaggcttgc agtaaatcag ctttaatatc
      301 ttcaacgtgt tctaaaccaa cggaaaaacg cagtaaatta ttcgtaatgc ctcgtgtaat
      361 acgttctgct tccggaatat ccatatgggt ttgtgttgca ggataagtaa taaaactttc
      421 tgcaccgcct aaactttccg caaaggtaat caatttaatt gccttgagaa atttcgctac
      481 ccactcttct ttttgtaaac ggaaagataa cataccactt ttgcctgaat ataacacgct
      541 gtcaatttca ggttgctctg ctaagaattt agccagttcg gtggcattag actgatggcg
      601 ttccattcgt aatgccaagg ttttcatacc acgcacggca aggtaagaat caaatggcga
      661 cagcactgca ccggcacagt tttggaaata gaataaacgc tcggtcaaat tctgcccgtt
      721 tactttggta gcatcagaat ctttcgcaac aattaagccg gctaacacat cattatgccc
      781 cgaaagatac ttggtcgcac tgtgaatcac aatatcagct ccgtgctcaa tcggacggaa
      841 taacgctggg gttaagaacg tattatcaac gatcaacatt aaattgtgtt ttttcgcaat
      901 tttagcaatg gcagcaacgt cgcactcctc catcaatgga tttgacggcg tttccacgaa
      961 aatcgcctta gtattcggtg taatagctgc ttcaatcgct gctaaatccg ctgtattaac
     1021 ataaaccggc tttaatgtgc cgtgattttt gtggctaaaa tcaaacaagc ggtaagaacc
     1081 accataaaca tcgctggaaa taatccattc atcaggtgct ttaaataatg acattactag
     1141 ctgaatcgct gccattccag atgccatcgc aaaaccggca tcaccgcctt ctaaatccgc
     1201 aatcccctgc tctaatacag ctcgagttgg gtttttggta cgggtgtaat cccagccggt
     1261 agattcgcct aagccatcac gcccgtaagc agttgataag ataatcggca ttgccaccgc
     1321 ccctgtacga ggatcagttc tgttaccgat ttgcactaat gtggtttcaa tattattgaa
     1381 ttttgtcatt gttattatcc ttcaattaca gattatttag atccaatacg tctgtcatat
     1441 caaacaagcc attttgtttg ccatttaacc attttgcagc acgcactgcg ccattggcaa
     1501 acgtcattcg actagaggct ttatgtgcga tttcgacacg ttcgccttca tcagcgaacc
     1561 atacactatg ctcccctaca acatcaccgg cacgaatagt agcaaagccg atttcatcac
     1621 gtttgcgttc gcctgtaata ccgttacgtt caaatacgcc atgagttttc aagtcacgcc
     1681 caagagtttt ggcaatatgt tctcccattg ataaagccgt acctgatggt gcatcaactt
     1741 tatggcgatg gtgtgcctca atcacttcaa tatcacaata atcgcccatt acttttgctg
     1801 ctttttcgag cagtttaaac accagattca ccccaacgct gtagtttgag gcaaaaacga
     1861 taccgatttt ttcactcgct gctttgattg cagctttacc tgcatcatca aaaccggttg
     1921 tgccaatcac catttgttta tgatgagcca cacaaatatc caaatgttct agcgtgcctt
     1981 cagggcgagt aaaatcaatt agtaaatcaa aacctgctac attttgggcg acatcatcag
     2041 aaatcaccac acctaatgta ccaaccccgg ctacttcacc agcatcacta cctactaatg
     2101 atgaaccttt acgctcaaaa gcagacccta attctacgcc ttgtgcatta tggacggctt
     2161 gaattaattg acgccccatt cgcccaccgg caccgacgat tccaattttt aatgtcatat
     2221 ttgttcttcc tttttatatt tgttttttac aagcggttac atttttaatt aattttgcaa
     2281 atagctttct gatggcaatt taaaaggtgg gtgagaagta aaatcaacaa tttgaataaa
     2341 gttttcacct ttcacataat gtaaaatata ctcagaagta taattaccaa atccttgact
     2401 ggtatcatat tctggaatgc cgatatgata atgccataaa gaatattttt gtgctttagc
     2461 caccttctct gcccaataag gatcattcgt tggcacatca tcagaacttt tatttcgacc
     2521 agctagattt tccaatccat aaatttcaac gtgttgttta aactgcagga ttttgactag
     2581 atctttttca ggcaaatatt gcaattcggc tgaaattttt gtaccaaata aaactttaat
     2641 gcccatttgc aacacctttc aaccagtttc taaattcatt aacattcgtt atatctttag
     2701 gcacttcgtg aaaagtatca tttaaccgct ctttcattcg ctctaagtca aaattaaatg
     2761 cggttgcttg agagagttgc tgttcaattt tgcgaatatt ggacttcata ttatccaata
     2821 tagccattgt ccttgagcca tcagtaaaat actgttgggt atcgaaaatc accaccttat
     2881 tttgatttag gtattttttg aaatcgttta aatcaatttc agcccaaaag tttggatttt
     2941 tttcgatagt ttcaatacag gcaattaata attgatttgc cattgtaata cgaaaattta
     3001 acaatgagat ttgctgctct gttgcaggtt tatcatcagc tgcgaaatca aatgccggat
     3061 aaatcactgc aagcgtgtca gccatagata agggtaaatt tttcatcatc tctccttacg
     3121 gaagaagttg tcattatcta ctggattact taaaaaaaca acttattcat tttatgctat
     3181 ttttgcccca tcaccgcaat atgtaccgta atttcctcac ggtcgtggta gaggtgttta
     3241 gcttgcattt tgaaccaaaa cccgtgtttc gttagctctt cttccaagaa attgaggcat
     3301 agttgcactt cttgataacg ttttttcatc ggcagtttta ggttgaaaat cgtttctcga
     3361 caccaaccgt tagtcagcca ttttgcaatg agtttcgaga tacgaatcgg ctgctctacc
     3421 atatcacaaa ccagccaatc gatttgttta cgcttaggcg gttggaattt aaacccatct
     3481 tcagggcaat gctcaattct tccggtttcg tgtaaacttg ctgccatttt gccgtgatcg
     3541 actgcataga caaaaacacc acgtttgact aattgataag tccaaccacc cggacaagcc
     3601 ccaagatcga cccctaccat cgtatcatta aagcgttttt tctcctctgc ttgcggaata
     3661 aaagttaaaa tcgcctcttc taatttaagc gttgagcgac taggtgcctc agccgggaat
     3721 tttaaacggg gaatccccat aaaaaacggc gatttattat ggttgtacgc atagcccaca
     3781 tagcaagctc ccggacgagt aaataaaata tgcaagctca cactaccctg catattttcc
     3841 gatttcccca accaaccttg ttttttcaat gccgaccgta atggcacagt aaatttacga
     3901 cagaaagtta ataattcttt cgcttcgttg gtatccggtg tttcgacaaa tacatcagaa
     3961 ctttggcgag gattaagttc ggcatattgg gctaaaatcg gcgaaattcg atcattttca
     4021 gacagatttt gcaacaaatc cccaacaacc aacatttggc gaacaaaaat aagctgttca
     4081 aactttaacg cttgggctaa tcgatctgct tcccctgctt gatagcactc aaaaatcaca
     4141 tagccactat tttctttaag gttggcaaag ccaaaaatgc cctgttgtgc agctttatcc
     4201 gtgatttcgc ctgctacctc tttttcaaac cctgctcggc aatataaggc taatttattg
     4261 aacattaggc ttttctcaca ctgatataaa ttaacgcaat ccaaccaagc ataaagcaga
     4321 gaccaccaat aggcgtaagc caatgaatag tcggcacatt taacgccagt aagtacaggt
     4381 tgccactaaa aagcagaatg cctaacgccc aattgcttcc gatgatgtta aaggctttgg
     4441 ctctacaaac gggtggattt tgcccaaaat ttgcaatttg gaataaacct aaagctaaaa
     4501 tggcaagggt gtgaaacatt tgatatttaa tccccgtctc aatccagcct aaggctttag
     4561 gcgataattg agccgataat gcgtggctgg ctatcgcccc aaatgccaca gtaaataagc
     4621 cgctgaatgc ggcaattgct acaaatttgt ttttcataag ttgaagatag gtatgatgtt
     4681 agatggctta ctatatcata ttatcgaaac caacaagcgg tgaaattttg caaaaaaatt
     4741 acaaaaaatc accgtttgta tgcttaatgg ttcaagataa tatccacatc ttccgattta
     4801 tcgtgaaccc caaatctatc tactaaggtt ttgctggcct catttaatcc gataatttct
     4861 acctcaacat cactttttcg atatttcaac acaactttat ctaacgctga aactgccgtt
     4921 acgtcccaaa agtgagcgtg ggttaaatca atgtggactt ttttcagttc tgaacgggta
     4981 aaatcaaatt gtgcgataaa atcatcagat gaggcaaaaa atacttgccc gataacatca
     5041 taacgcaatt cctctttctc tatagcactt gttttaaccg ccatataacg tccaatttta
     5101 ttcgcaaaga ataatgccga gagcaacacg ccggaaaata caccaagggc taagttatgt
     5161 gtataaacca caattgcaac agtgactaac atcactacat taaagccgat tgggtgcgtt
     5221 tttagctctt ttaaggaatg ccaattaaag gtgccgatag agaccataat catcactgca
     5281 actaatgcag ccatcggaat cactctcaaa atatcgctca aaaagaccac aaaaatcagt
     5341 aataatattg gcaatgccct gccctttaca ttcacggttt ttatcgctgt ctgtctctgt
     5401 catttcatca acaatcgttg ccgtcattaa agattccaat aaccctactg cggccaagct
     5461 gaaagaataa ggcaaaataa tccataaggt gtctaaatta agcggaatat cgggtaataa
     5521 aaacaccggt aaggtatcgg gtaattgccc catatcccca acggtacgaa catcaatgcc
     5581 ttgccataat gtgaaaagtg ttaaagcaat aatggtcact aatggtgagg gaatgatttt
     5641 tccaatcacc ggtacataag gaaaaagata aatgatagca agccctgcta ccaccagtgc
     5701 ataagtatgc caagttgtat tttgtaactc aggtagttgt gccataaaaa ttaaaatggc
     5761 aagtgcatta acaaacccaa tcactacggc tcgtgccaca aaccgcataa gcgagccgag
     5821 ttttaaccaa ccggcaataa tttgcaacac gcctgttaat aaggtggccg ctagcatata
     5881 ttgtaaaccg tgatccctca ctaagcctgc taataccaga gccattgcac cggttgctgc
     5941 agaaatcatc gccggtctgc cgcccacaaa actgataatt actgcaatac aaaatgaggc
     6001 atataaacca atttgtggat caacccctgc aataattgaa aatgctatgg cttctggaat
     6061 taacgccaaa gccaccacta aaccagagag aacatcacct cgtacatttg aaaaccattg
     6121 ttgtttaatt accgtaggcg aaaattgctg aaataaagtt gtcattatta cccttaaata
     6181 aaaagaaaag ccgagcaaag tcggctaaaa atgaggcgag agagtagcaa attagtgaaa
     6241 agtcgtcaaa taaacaagcg gtcttctttc gctctttttt tgcaaaaaat agtagaaaaa
     6301 tgaccgcttg gattaattgc tattcactaa aaaaaggggc tttaaacacc gtcacttcag
     6361 gtgcatctcc cacatatttt tccacttgaa ccgtggtagt gttcggtgca ttgccctgcc
     6421 cgagttttga tgaaccctca ttacgggtta gcacattcgg gttgccgttt ttgcatagtg
     6481 gagtatctgt tttgcctaaa tcttgcgggt cataccaacc accttcgtat aacgctactg
     6541 tgccttgaat gatgccatca gtcaccactg ctcctgccaa cacctgccct cgcttgttaa
     6601 aaattcgcac aatatcaccg cttgtaatgc ctctgtcagc ggcatctttt gtgtgaatta
     6661 gcattggttc tctgccgttt acctcgtaat attgacgtaa tgaggagtaa gcaagctggc
     6721 tgtgtaaacg gtatttaata tgcggtgtaa ctaatgccaa cggctcggct tcgttggttt
     6781 tgcctgaata ttcgtgatgt tcaaaccaag tcgggtgtcc tttacaatct tcataattca
     6841 tcttggcaat ggtttcggag aaaatctcaa ttttgcctga tggcgttgcc aatttgtgtt
     6901 taatcggatc agtacgataa tcttgatagc gaacgaaagt attattttga tgttctgcct
     6961 caaagctcaa cactttattt tccgcccaaa atgcctcgaa atccagcaat ggcgtattag
     7021 ctttttcccc cgcctcaaag gcaacttggt aaaattcctt aagccattcc atttcgcttt
     7081 tgccttcggt aaatgcttgt tctttaccgg ctcgtttcgc taattcggca aaaatatcgt
     7141 aatcattctt cgcctcaaat tgcggttcaa ccacctgttt catcgggata atatgttttg
     7201 ctacataatc accggcaacg gtgagatcgt ttcgctcgta gctggtggtt gcgggcaata
     7261 caatatctgc cattcgagcg gtcggtgtcc agtaacattc attgacgatc atcgtttccg
     7321 gctgttgcca cgctttcact aaatagttgg tatccgggtg gtgagcaaac ggattacccc
     7381 ccgcccaata gactaatttg atgttcgggt aatgtaatgt ttgcccgttg taatcataag
     7441 gctgattcgg tttgagcaac gcatcggcaa ttcgagacac cgggaaaaac ggcatatcgg
     7501 ggttaggttt acctgcattg attgccccta aacgaacacc ggaattaaca tttagcccat
     7561 tggtagaata acgataattt aagccgaaac cgccgcccgg caagccaatt tgcccgagca
     7621 tagcggcaag agtcactaac gcccagtggc tttgctcccc gtgttgcagg cgttgcaagc
     7681 cccagccgga catcaacatt gtgcggtgag taacaaaatc atttgctaag gttttaatca
     7741 cctcctccgg aatgtcacaa atttggctcg cccactctgc tgttttaggt aaattatctg
     7801 cttttcctaa cacataatca gcaaattgct cgaaaccaac agtatattta gttaagaagt
     7861 cgtgatcgtg cttgttttca gtaataaggg tgtgggcgat ccctaaaatc agtgcaacat
     7921 ccgtgccggt attaataggc aaccactctg cctctaaaaa ttgacaggtc tcgcttttca
     7981 ccgggtcgat acaaataatc cgtttaccgc ttgcttttaa tttggcgaga taatcaatcc
     8041 cctccggttc ggcagaggtc cacgcaatgc gaagtgtatt cagtggatta gacgaccaaa
     8101 ttaccaataa ttctgtgctt tctacaattg tgtgccaact ggtttgttga gcatacacct
     8161 caatattgcc taatacataa ggcataatca cttgcaccgc accggtggaa taatcgcctt
     8221 tagtattggt aaagccgcct gtgacgttta aataacgttg caaaagcgtg cgagaggcgt
     8281 gcagtgaacc actgctatac cagccgtaag aaccgccgaa aatggattcg ctgccatatt
     8341 gctctcttac ccgttggatt tcgccggaaa ccagctcaaa ggctttgtcc caagagattc
     8401 tcacccactt atctcgccct cgcaaagtgg tgtctttatt cccttccaag tagcctttcc
     8461 gcaccatcgg atatttcacc cgaaccgggc tatagagctg atccgccacc acatcttgca
     8521 attcgttttg gtgatttttc gctaaactgc cctctgattt caccactttt ccgttttcca
     8581 ccgttacatt taatgcaccc cagtgggcgg cggtggtaat ggtatttttc ggtttatcca
     8641 aaaagacaaa cttccctttt tctaatgctg tgttcattta aattaatgcc ttttctgtta
     8701 caaaattgag aggaatttac tggattaagc caaaagttgc aaccacaagc ggttgttttt
     8761 agccaaaaat ttgcaaaaca aaacccacct aaaaaggtgg gcttcaagga agttaaacgg
     8821 caacttgaac gattacattg tccgcttttt tcacataact attgatttgg tcaaagttca
     8881 tatagcggta aatatcgtcc ttatctttct gcaagttatt catatagtct aggtactctt
     8941 gcggtgtcgg caatttaccc aataacgcag aaactgcggc taattctgct gaggctaaat
     9001 acacatttgc cccttgccct aaacggttcg ggaagtttcg ggtagaggta gaaaccacat
     9061 tagcattatt tgccactcgg gcttggttac ccatacagag agaacagccc ggcatctcta
     9121 cccttgctcc gcttttgccg taaatgctgt aatagccctc ttcggtcagc aagcctgcgt
     9181 ccattttagt cggcggagca atccataatt tagtcggcaa ttcgccctgt gcttggctta
     9241 acagtttacc tgccgcacgg aaatgcccga tattagtcat acaagaacca ataaagactt
     9301 catcaatttt atcgccctgt acttgagaaa gcaggcgagc atcgtcaggg tcattcggta
     9361 cgcacacaat cggctctttg atttcatcta agttgatctc aatcactgcg gcatactccg
     9421 cattttcgtc tgcctctaaa agctccggat tatccaacca cgcttgcata ttggcgatac
     9481 ggcgttctag cgtgcgttta tcgtcatagc cttccgcaat catccatttt aaaagcgtaa
     9541 tattagaatt cagatactcg ataatcggct ctttgttgag cttgatggta caggctgcag
     9601 cagagcgttc agcagaagca tcagaaagct cgaaggcttg ttcgattttc agatcttcca
     9661 acccttcaat ttctaaaatt cgaccggaga aaatattttt cttacctttt ttctccaccg
     9721 tcagcaagcc ttgctgaatg gcataatacg gaatagcgtg aaccagatcc cgtaaggtaa
     9781 tgcccggttg cattgtgccg gaaaaacgca ccaagaccga ttccggcata tctaacggca
     9841 tcacccctgt tgccgcagca aaggcaacta agcccgaacc ggcagggaat gaaatcccga
     9901 ttgggaaacg ggtgtgggaa tcgccgcctg taccgacagt atccggcaat aacatacggt
     9961 ttagccaaga gtgaatcacg ccatcacccg ggcgaagtga cacaccgcca cggttcataa
    10021 taaaatcagg caaagtgtgg tgggtaatta cgtccaccgg tttcgggtaa gcggcagtat
    10081 ggcagaacga ttgcatcaca agatctgccg agaagcctaa acaggctaaa tctttcagct
    10141 catctcttgt cattggtcct gtggtatctt gtgaaccgac agacgtcatt cgaggctcgc
    10201 aatattgccc cggtcgaacg ccttctacgc cacaagctcg ccctaccatt ttttgagcaa
    10261 gggtgtagcc tttgttactc tctgaaaccg actgcggttt aataaataca tcactttcag
    10321 gcaagccaag tgctactctg gctttatggg tcaaaccacg tccgataatc agcggaattc
    10381 gcccgcctgc acgcacttca tcaagcaata cttcggtttt tagctcaaat tcggctaaga
    10441 cttcatcgga gttgtgtttg caaattttgc ctgcataagg gtaaatgtcg attacatcgc
    10501 ccatattcag gttggttaca tccacttcga tcggtaaaga accggcatct tctaatgtgt
    10561 taaagaaaat cggggcaatt ttaccgccta acaccacccc accggcacgt ttgtttggaa
    10621 tgtaaggaat atcttccccc ataaaccaaa gcacggagtt ggttgcggat ttacgagaag
    10681 agccggtgcc gactacatca ccgacatagg ctaacgggaa acctttttct tttaatgctt
    10741 ccagttgctt aatcgggccg gtatgaccgt tttcatcggg gaaaataccg tcacgttcat
    10801 ttttcagcat tgctaatgcg tgaagtggaa tatcagggcg agaccaagcg tcttgagccg
    10861 gggaaagatc atcggtattg gtttcgcctg tgactttaaa taccgttacc gttaattttt
    10921 cggcaagttt cgggcgagag gtaaaccaat cggcattcgc ccaagattcc aatacttgtt
    10981 gtgcaaacgg attaccctga tctgcccgtt cttttacatc gtggaaatta tcaaacatca
    11041 ataatgtttt agataaggct tctaccgcaa tcggtgcaag ctcagggtta tccaacgcag
    11101 acaataaggt ttcaatgtta taaccacctt gcattgtgcc gagtaatttc actgcgtgag
    11161 caggcgaaat gagcggcgat gtggcaaccc ctttggtaat atcggctaaa aaggcggctt
    11221 taacataagc ggcttcatca acacctgccg gaatacgatt ggtaaaaaga tccaataaaa
    11281 agaccgcttg ttcagccggt gggtttttca ataattcaac cagttgagcc gtttgttccg
    11341 cagaaagtgg ctgaggcaca acacccagtg ccgcacgttc atcaacctgt tgttgataat
    11401 tttctataaa attttccatc atcattccct ctccaacttt acatattggc aataatgtct
    11461 tgtgcaaatt ctgaggttga gcgtagagtt accccctcca gcatttccgc aaaatcaaag
    11521 gtgacagttt tattggcaat ggttttagac accgctttta ccactaaatc agccgcttca
    11581 acccaaccta aatggcgtaa catcatttcc ccacttaaaa ttaatgaccc aggattgcct
    11641 ttattttgcc ctgcaatttt aggggctgtg ccgtgtgtgg cttcaaaaat agccgcttca
    11701 aacccaatat tcgctcccgg tgaaataccg attccgccta cttgtgcggc taaagcatca
    11761 gaaatatagt cgccgtttag gttcagtgta gcaatcacat catattcggt tgggtgtaac
    11821 aagatttctt gtaaaaaggc atcggcaatg ctgtctttta taatgatttc ctcaccggtt
    11881 ttcggattag tcaagctcat ccaagggcct ttatcaatta attttgcccc aaattcttcc
    11941 gcaacttggt agccccactc tttaaatgct ccttcggtaa atttcataat gttaccttta
    12001 tgcacaagcg tgagcgattt acggttgtta tcaattacat attgcaatgc agcacgcacc
    12061 aagcgttgtg tgccttgctt agaaaccggc ttaattccga taccgcaatc ttcggtaaag
    12121 cggatttttt tcacgcccat ctcttgttgt aaaaattcga tcactttatt ggcttcaggc
    12181 gaaccggcaa cccattctac accggcataa atatcttccg agttttcacg gaaaatcacc
    12241 atatccacca gctcagggtg tttaaccggg cttggcgtac cgtcataata acgaattggg
    12301 cgtaagcagt tgtataaatc taatccttga cgcatcgcca catttaaaga acgaataccg
    12361 ccacccaccg gtgtcattaa aggaccttta atcgccacgt gatattggcg gataagctct
    12421 aaggtttcat ccggcaacca agtgttctca ccatataatt tattcgcctt ttcgcctgcg
    12481 taaatttcca tccaagcaat ttttcgcttg ccttgatagg ctttttctac cgccgcatct
    12541 agcactgctt tcattgcagg agtaacatca acaccgatgc cgtcaccttc aataaatgga
    12601 ataatcggat tatccggaac ttgtaaagaa ccgtcttggt tcagttgaat agtttcgcct
    12661 tgtggaattt ggacttgtgt ttgcattgat tttacccccg taatgacgaa aaagtagtga
    12721 cgaaaaatga atgttgacaa tcagccaaca atggattaac tataaacagt aaatttctaa
    12781 atgtaaataa agcaaaatgg gctgagagag aatttgtgat ctaacgcaca tttatgtaaa
    12841 taaaatgtaa aaaatcgttg tgattctttt ggaaatcatc tagtttatct tataaatctc
    12901 aaataaatag gagtaagcta tgtcaaaagc aacattaaca ctcgaaacag gtgaaaaact
    12961 tgaactcaat atgcaaaaag gaaccttagg gtatcaaacg attgatattc agcctttctt
    13021 aaagcataag ttatttgctt atgatcccgg attggtttcg accgctgtat gccgatccaa
    13081 tatcacttat gttgatggcg atgaaggggt tttactctat cgaggctacc cgattgacca
    13141 attagccaaa cattctgatt acttagaagt cggttatatg ctgttattcg gcgaacgccc
    13201 taccaaagaa gaatacaaag acttcgttca actcatcaaa aaacacactc ttgtacacga
    13261 acaactaacc aaattcttct ccggtttccg ccgagattcg cacccaatgg cggtgatgtg
    13321 tggggtaagt ggagctttgg ctgccttcta ccacgacgcc attgatgtaa acaaccaagc
    13381 ccaccgtgaa ttaaccgcca ttcgtttgtt agccaaaatc ccaacccttg cggcgatgtg
    13441 ttataaatac tctatcggtc agccgtttat gttcccacaa aaccacttat cttacgccgg
    13501 caacttctta tatatgatgt ttgccactcc ttgtgaaccg tacgaagtga accctgtgtt
    13561 agagcgtgcg ttagaccgaa ttttcatttt acatgcagac cacgaacaaa acgcttcgac
    13621 ctcaaccgtg cgaaccgccg cttcatcagg tgcaaaccca tttgcttgca ttgctgccgg
    13681 tattgcctct ctctggggac ctgcacacgg aggagcaaat gaagcctgta tcaatatgtt
    13741 gaaagaaatc ggcactgtgg atcgcattcc tgaatttatt gctcgagcca aagataaaaa
    13801 tgacccgttc cgcttaatgg gctttgggca tcgtgtctat aaaaactacg accctcgtgc
    13861 gaaagtaatg cgtgaaacct gccacgaagt gttaaaagaa ctgaacattg ataacccact
    13921 atttgaagtg gcattggaat tagaacgtat tgcgttaagc gacccttatt tcattgagca
    13981 taaactttat ccaaacgtag atttctactc cggaatcgtg ctaaaagcca tcggtattcc
    14041 aacctcaatg tttaccgtaa tgtttgccct agccagaacc gttggctgga ttgctcactg
    14101 gaaagagatg tatctccaag gcaatatcaa aatcgttcgt ccacgtcaaa tctacaccgg
    14161 acatactaaa cgtgattttg agccaatgga taaatcataa gattggcaaa aaatcgaaaa
    14221 attttaaccg cttgtttcca caagcggtta tattttgcat aaaatttgca aatcaggcta
    14281 atttatttag cagttgtgtt ctaacatctt gaccattttc atcgcttttt acagccataa
    14341 taaataagcc ttttccttga cttaatttct cccaaagatt gccaattaag gctttttctt
    14401 tagaatcttc attacttttt aattgttccc ctttatattc cacaattaaa attcgaccat
    14461 caataagctc tacaataaaa tcagggtaaa aattctgatg agctaatggt aaagaaaacc
    14521 ctctttttac aggatttctt aaccaatcat cagaaaaact cagttgctgc tgattaaaat
    14581 ggtaagaaac ccgtttatct tccacatcaa tttcaaaact ttggctattt tcttgtaatc
    14641 taaatccatc aagtttggct ggataatcca ataaattcca actttggtaa tctaatagca
    14701 cttgtgaatc agctaagtcg aattcgcctt gaatattcat acacagttga ggtattactt
    14761 taaatatttc ccctttttcg gcaggagaag ataatatttc aactctattc tggtgaattt
    14821 gtaactgttg ctcaatttgc tcttttttct tacctgttgc agttcgaatc aacgcttttt
    14881 ctaacttttc acttaaatta ccttttactt gcactaaaat gtgaccttct tgctcggtaa
    14941 ttttaagttg agaacgtttt gcttcgctta aatcagacat ttcagggagt tgcgttaatg
    15001 ctaaaactgt tgtcggtgta tagaataaat ctccttcgtt tccaatccaa ttttcttgtt
    15061 gtgggatacg aagcatttca gctacttcta atgcttcaaa ccccattcca atcaatttat
    15121 cttgtaaatt acgagccgtt tcgccgaacg acttagagga aagcggagca taagcacgat
    15181 ttaaatcttc aatttgacgg tgtttagcat aaggcattcg caatactcgc cctaatagct
    15241 gctccgcttc cttgctagag gaaacatttt gtactgagca aaaaatataa gcaaaagggc
    15301 aatcccaccc ttcttttaat gcctcaaccg tgatgatgta attgatcttg cattgtggat
    15361 taaataaatc gatattatct aattcgtgtt gattacctat cacaatggca atctcttctt
    15421 catcaatttt taactcatca attaaatact gttttaagac ttctactgtt actttgccgt
    15481 ttttcggctc agcttgaaac aataaatcgg acgaacgtac tcgctctcat actgtgcttt
    15541 ttgtgctaat gctcctctat tgattacagc cccatctatt gcttgttgcc agttgtgatg
    15601 ttcggtcagc acaataggca atttgatcat ctcttctgct tttagatggc ttgccgaaac
    15661 gtgatacaac acattacttc ctgcttttct atctgtgttt ggcgtagcag taaattctaa
    15721 aatagctgat ggggaaagtt gagatagcac atcaaaagag agtgaagtcc gagcattatg
    15781 tgcttcatca acaatgacca aaggctgata agctcgcaac aaatttgcaa aagaacactt
    15841 aattttgccc gtttgtttgg aggttaaacc gttctcttgt agatcagtag tggaaatctt
    15901 ttctaaattt gcctgaatat ggggtagtaa acgctcaaaa tgagctgtta atttttcatt
    15961 aaaagcatag atttttcgcc catcttgatt ttctacccga aaattttgaa tagtagaaac
    16021 gattacaatc gccttattac caaaatcttg tgggcgaagt aaatcaaaat cttcagactc
    16081 aataaccatt acttctcggt taaaagtttt atcaagtact gcacggtaag ggtgttgcgg
    16141 attttttaat gcttctgtag tttgggtttt aattgtacga gaaggcactg gccacaaggt
    16201 aaccgggaaa tcgcaatcca aatactgctt tgcaatacga gcaatactat gcgaggctaa
    16261 caacgtttta ccgccaccag ttggaattcg tacacaaaca taaggcacat cacgcaaatt
    16321 actgtgttca
//
LOCUS       DANLZD010000051        16284 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.051, whole genome shotgun sequence.
ACCESSION   DANLZD010000051 DANLZD010000000
VERSION     DANLZD010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16284)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16284)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16284
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.051"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(98..328)
                     /locus_tag="PXE26_001186"
     CDS             complement(98..328)
                     /locus_tag="PXE26_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005720191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593776.1"
                     /translation="MALHRCPECRKRISDSLEHCIHCGFSFKEADLAIYRQKLEQRRL
                     HNQEINRKSVKLQLIWLVIFIAVIALASWITN"
     gene            complement(336..1079)
                     /locus_tag="PXE26_001187"
     CDS             complement(336..1079)
                     /locus_tag="PXE26_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593777.1"
                     /translation="MLNKHINKIINSSFSLAFFTLTSFATAYCYGWGQAIFHGYPWWH
                     VEIGNASMARSLAYVFGTSVILFLCYALGYSLLNKVFQLHYFRNLGWLRVIVLVSVFT
                     VPVILTFYLFTGIVPIYISFIYIFVSGVSVFFFRKRWNNTKFDLDFRKMLLGGSFALF
                     NIFIFLYFSLLSLHIGYLRAGLRTTYDYIEIENQKYYILSTNSDNGYIMGTKIRGNQS
                     FLFFNRDTHQYYHVHIEQCTDSRLCKVIV"
     gene            complement(1250..1588)
                     /locus_tag="PXE26_001188"
     CDS             complement(1250..1588)
                     /locus_tag="PXE26_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5593778.1"
                     /translation="MKLITTIIQPSKLDQVQDALSEIGIQGMTITEVKGFGRQYGHTE
                     QELSQMSRIDFRPKIKVEILVSNYQTDEVIDAILNASYSGQVGDGKIYVANIEQVIRT
                     RTGETDDEAV"
     gene            1847..3745
                     /gene="dnaK"
                     /locus_tag="PXE26_001189"
     CDS             1847..3745
                     /gene="dnaK"
                     /locus_tag="PXE26_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005670448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HDL5593779.1"
                     /translation="MGKIIGIDLGTTNSCVAVMDGDKPRVIENAEGARTTPSIIAYTD
                     KETLVGQPAKRQAITNPKNTLFAIKRLIGRRFTDAEVQRDIEIMPFEISKADNGDAWV
                     TVKGDKLAPPQISAEILKKMKKTAEDFLGEPVTEAVITVPAYFNDAQRQATKDAGRIA
                     GLDVKRIINEPTAAALAYGLDSKKENQTIAVYDLGGGTFDISIIEIDNFDGEQTFEVR
                     ATNGDTHLGGEDFDNRVINYLVEEFQKEQGVDLRNDPMAMQRVKEAAEKAKIELSSAQ
                     ETEVNLPYITADATGPKHLNIKVTRAKLESLVEDLVNRSLEPLKTALADAGLSVGDIN
                     DVILVGGQTRMPLVQKKVADFFGKEPRKDVNPDEAVAIGAAVQGGVLSGSVTDVLLLD
                     VTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKRAADN
                     KSLGQFNLEGINPAPRGMPQIEVTFDIDANGIINVSAKDKNTGKEQQIKIQASSGLSD
                     AEVEQMVRDAEANAEADKKFEELVQARNQADGIAHATRKQITEAGDALNADDKAKIEA
                     AISELETAAKGEDKAEIEAKIEALIKASEPLMQAAQAKAQGGEQPQQSQKDDGVVDAE
                     FEEVKDNK"
     gene            3887..4189
                     /locus_tag="PXE26_001190"
     CDS             3887..4189
                     /locus_tag="PXE26_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593780.1"
                     /translation="MLKLYPTTENVQPPFYKIYDHKSGETVIATETENSNTAILMDDF
                     VWFEQIPTTEALLADTWSVIENRSKQGLLKRAYTKDFEKHLADGKVEIYIAVNPHC"
     gene            4412..5551
                     /gene="dnaJ"
                     /locus_tag="PXE26_001191"
     CDS             4412..5551
                     /gene="dnaJ"
                     /locus_tag="PXE26_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HDL5593781.1"
                     /translation="MAKKDYYEVLGLSKGASEKDIKRAYKRLAAKHHPDKNQGSKESE
                     EKFKEITEAYDVLTDSEKKAMYDQYGHAAFEQGGAGAGGFGGFGGGGFGGFEDIFSEM
                     FGGGFGGGGRRQRVVRGDDLRYDIEITLEEAVKGCKKDIRIQTLAECDTCHGTGAEAG
                     SKVETCSHCHGSGRVRRQQGFFVTEAVCPSCHGTGKRIEKPCRSCHGDGRVQKAKNLS
                     VTIPAGVDTGNQLRLSREGAAGENGAPAGDLYVVIHVKEHDIFERDGSNLYCEVPISF
                     TLAALGGEIEVPTLDGKLKLKIPAETQTGKLFRVRGKGVTSPRGGYAGDLICKVVVET
                     PVNLTEEQKALLRQFEESLEGQGKHRPKHEGFFDGVKKFFDNLGK"
     gene            5839..7347
                     /locus_tag="PXE26_001192"
     CDS             5839..7347
                     /locus_tag="PXE26_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HDL5593782.1"
                     /translation="MSKCPVTHLTMNNGAPVVDNQNSLTAGPRGPLLAQDLWLNEKLA
                     NFVREVIPERRMHAKGSGAFGTFTVTNDITKYTRAAIFSQVGKKTEMFARFTTVAGER
                     GAADAERDIRGFALKFYTEEGNWDMVGNNTPVFFLRDPRKFPDLNKAVKRDPRTNMRS
                     ATNNWDFWTLLPEAFHQVTIVMSERGIPASYRHMHGYGSHTYSFINAANERFWVKFHF
                     HTQQGIKNLTNEEAAAIIANDRESHQRDLYEAIERGDFPKWKMFVQIMPETDADKVPY
                     HPFDLTKVWPKSDYPLIEVGEFELNRNPENFFADVEQSAFAPSNLVPGISVSPDRMLQ
                     ARLFNYADAQRYRLGVNHHQIPVNAPRCPVHSNARDGQGRVDGNYGSTIHYEPNSFGK
                     WQEQAQYAEPPLKINGDAAHWNYREDDADYFSQPRVLFNMMNDEQKQALFNNTAAGMG
                     DALDFIKYRHIRNCYACDPAYGEGVAKALGMTVEDAIAARATDPALGQPGLL"
     gene            complement(7412..7633)
                     /locus_tag="PXE26_001193"
     CDS             complement(7412..7633)
                     /locus_tag="PXE26_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDL5593783.1"
                     /translation="MNVRLPASGLVCPFPLVEAKAAMAKLNKGDSLTIEFDCTQATEA
                     IPNWAEEEGYEVTDYQQLGDALWEITVVK"
     gene            complement(7662..8171)
                     /locus_tag="PXE26_001194"
     CDS             complement(7662..8171)
                     /locus_tag="PXE26_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE family protein"
                     /protein_id="HDL5593784.1"
                     /translation="MLFTGLLCGFLLGFVMQRGRFCITGAFRDLYVTKNSRMFVALLI
                     AITVQSIGIWLLYEAGSFSSPAEDLPLLAVIIGAFLFGIGIIYAGGCATGTWYRAGEG
                     LIGSWVALVIYGLFSASMRTGVLAPLNQELKSNVIQHRTIYETFGISPWVLVFILSVI
                     TLALSAHSI"
     gene            complement(8278..9612)
                     /locus_tag="PXE26_001195"
     CDS             complement(8278..9612)
                     /locus_tag="PXE26_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HDL5593785.1"
                     /translation="MQLYSYICLLFGLAMFISFFTRKLNENIQTTIAITASALVGSLL
                     ILTFGSLGWFNVDKLAISIFEQLDFKSFLLNGMLGFLLFAGSLGIKLPLMKEQRREIA
                     VYALFSTLVSTFLIGALIYGVARLLGLELGFVYCLLFGSLISPTDPIAVLAIIKSLKA
                     PKRLSMHVEGESLFNDGIGLVIFTTIFAVAFGGQEPNLSGITGLFLQEAVGGIVFGLL
                     TGFVAHKFISATDDGSLEILITLTIPTVGFVIANYLHVSGALTMVVAGIMIGNWTRRS
                     GFSEQSQKYLDHFWEMIDHSLNYLLFLLIGLSTLLVDFTFIGGVLMLAAIPICLLARY
                     ISLWIPYQVLKRFRTYNPYTLKIMTWGGLRGGLALAMALSVPAGAAVVSSSEGNLDVR
                     DLILLMTYAVVTFSILVQGSTVEPMIKKSKLVDPRKVALNKLGAPDDVIPHI"
     gene            complement(9723..10871)
                     /gene="dapE"
                     /locus_tag="PXE26_001196"
     CDS             complement(9723..10871)
                     /gene="dapE"
                     /locus_tag="PXE26_001196"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HDL5593786.1"
                     /translation="MKNEIISLAQNLIRRDSISPQDKGCQQEIAQRLEKLGFNIEWLP
                     FGDTLNLWATHGSENGKTEPCIVFAGHTDVVPVGDESQWAYPPFSAEIVDGMLYGRGA
                     ADMKGSLSALVVAAETFVQHHPNHKGKVALLITSDEEAAAKDGTVKVVETLMARNEAV
                     HYAVVGEPSSSKVFGDVIKNGRRGSITADLYIEGIQGHVAYPHLAENPVHTSLGFLTE
                     LTTYQWDNGNEFFPPTSLQIANIKAGTGSNNVIPGELYVQFNLRYCTEVTDEIIKAKV
                     AEMLEKHGLKYRISWNLSGKPFLAGNGKLVEAALQAVENVTKITPRLDTGGGTSDGRF
                     IALMGAEVVEFGPLNATIHKVNECVSADDLAHCGEIYYQILEKLLATA"
     gene            complement(11001..11348)
                     /locus_tag="PXE26_001197"
     CDS             complement(11001..11348)
                     /locus_tag="PXE26_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HDL5593787.1"
                     /translation="MTTLVYGIKNCDTVKKALKWLEDHNQNPQLHDYRVDGLNADWLV
                     EMEAKFGWENLVNKRSTTWRNLDEEIKNNLNRESALKVLTEQPTLIKRPIVIKEDIAL
                     IGFNEKEYVAAFN"
     gene            complement(11348..12205)
                     /gene="folP"
                     /locus_tag="PXE26_001198"
     CDS             complement(11348..12205)
                     /gene="folP"
                     /locus_tag="PXE26_001198"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HDL5593788.1"
                     /translation="MQIHFKNFQKNDRLLDLTTPQIMGILNFTPDSFSDSGKFFSLDK
                     ALFQAEKMLADGASIIDIGGESTRPNAAIVSLEQELERVVPVVEAIRSRFDCLISVDS
                     SKAEVFKESAKVGMDIINDIRALTEPNALAAAVELGLPVCLMHMQGNPQTMQQNPHYD
                     DVLEDVADFLNQRIFECITAGIPKEHIILDPGFGFGKSVKHNYQLLKHLKAFVDSGFP
                     VLAGLSRKSMIGAVLDKPVEQRLLGSVVGALLAAQNGAKILRVHDVAETADALKIWQA
                     MLESDNEEK"
     gene            12194..12331
                     /locus_tag="PXE26_001199"
     CDS             12194..12331
                     /locus_tag="PXE26_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593789.1"
                     /translation="MDLHIFAYILLVQASTLVPLYVDLQHKRGRLRYLTLSLSYLVIS
                     P"
     gene            complement(12314..13276)
                     /gene="rluC"
                     /locus_tag="PXE26_001200"
     CDS             complement(12314..13276)
                     /gene="rluC"
                     /locus_tag="PXE26_001200"
                     /EC_number="5.4.99.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(955/2504/2580) synthase
                     RluC"
                     /protein_id="HDL5593790.1"
                     /translation="MTTEKVISAGVQFFTISEDEAGQRLDNFLLAKLKGVPKSLIYRI
                     VRKGEVRVNKGRNKPEYKLQPDDLVRVPPVRVAEKNEAPISTKLNKVAELESQILYED
                     ESMLVINKPSGIAVHGGSGLSFGVIEALRALRPQARFLELVHRIDRDTSGILLVAKKR
                     SALRSLHEQLREKVVQKDYLALVRGQWQAHTKVIKAPLLKNELASGERIVRVSEEGKP
                     SETRFSIEERYANATLVKASPITGRTHQIRVHTQYAGHPIALDDKYGDAEFDSKMKEV
                     GLQRLFLHAHAIRFEHPKTGEEMVITAPLDKTLKGVLAKLRANY"
     gene            13385..14287
                     /locus_tag="PXE26_001201"
     CDS             13385..14287
                     /locus_tag="PXE26_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HDL5593791.1"
                     /translation="MTEKVTETAPNIDVVAETEKVIHKVSNMNIETMLNEWIIPYGTK
                     ILLAIAIFVVGKFLARLISRLLGKAALKSTKDEMLQSFIVSISYFLLLLIVVIASLSQ
                     IGINTSSLVALIGAAGLAIGLSLQNSLQNFAAGVMLLIFKPFRKGDLIETGGMTGVVE
                     QMGLLVLELRTGDNKTVLLPNGKVFSDSIINYSNNPTRRIDFTFDISYESNLKEAKEI
                     IQRILDANTYVLKDPAPVVAVGALAPHSVQLVVRPWVQTPNYWAAYWEIIEQVKLAFG
                     EAGISIPYNQMELHIKSGSLENKA"
     gene            14385..14882
                     /gene="rraA"
                     /locus_tag="PXE26_001202"
     CDS             14385..14882
                     /gene="rraA"
                     /locus_tag="PXE26_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E activity regulator RraA"
                     /protein_id="HDL5593792.1"
                     /translation="MRIDTSALCDLYSDQVDVVEPIFSSFGGASSFFGKITTVKCFES
                     NGLIAEVLEEEGEGRVLLVDGGGAVRRALIDAELAQLAVDNGWEGIIVYGAVRQLDIL
                     ERLDIGIHALAPIPVGADNTDIGEVDTPVNFGGVTFFPEDYVYADLTGIILSQELLDL
                     NDISE"
     gene            complement(14930..16273)
                     /locus_tag="PXE26_001203"
     CDS             complement(14930..16273)
                     /locus_tag="PXE26_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HDL5593793.1"
                     /translation="MKQLFIFAFTLVLSACSLVVYKPVETIKQVNVERGYRQKNVIAE
                     SAKDGNIVVIMFSGGGTRAAALGYGVLEEFKKVRVKETNKGNTLLENIDIAFGVSGGS
                     ILATYFALEGKDIIPKFADRFLKANFQKDIITEVFSLSNLPRLSSPQYGRGDLLQERL
                     NFALYHGKKFGDLVKNRKGPFAVISATDMNIGQKLTFTQETFDGLCLNLNDLEISRAV
                     AASSSVPLIFAPLTLNNNGGNCHFSMPQEFSAREKAIDGLITKNIEETNHILSLYQDS
                     KERPFIHLVDGGLTDNLGLASVLEISDVMGIEEMYQYIHQLRVKNIVVINVNAQNEVS
                     SEIDKTANVPGVADVVNTIVNVPIDRTTQINLQRYRQFTDGWNEYANKQPSKIEMHFV
                     SLGLKELPDGDLKKDVLNIATSFYLPEEDVDKLREAARVLLQQSQEYNAALKTLQ"
BASE COUNT         4957 a         3481 c         3272 g         4574 t
ORIGIN      
        1 tgaatattta ctccagtttt aatcgagaat tatgttcttt tttattttgt tattctcttt
       61 aggtataaaa aaacccggta aataccgggc ttttatttca attggttatc caacttgcga
      121 gagcaattac cgcaataaaa ataactaacc aaataagttg taattttacg cttttgcggt
      181 tgatctcctg gttgtgtaat cggcgctgtt ctaacttttg ccgatatatc gctaaatcgg
      241 cttctttaaa cgagaagcca caatgtatgc aatgttctaa actgtcgcta atacgctttc
      301 gacactccgg acaacggtgt aatgccataa ttacctcaaa ctattacttt gcataatcgg
      361 ctatccgtac attgttcaat atgaacatgg tagtattgat gagtatcacg attgaaaaac
      421 aagaaagatt gattacctct tatttttgtt cccataatgt agccgttatc actgttggtg
      481 gataatatgt agtatttttg attctctatt tcgatgtaat cataggtagt tcttagtccg
      541 gcacgcaaat aaccaatatg caatgagagc aaactgaaat agagaaaaat aaagatgtta
      601 aacagggcaa aacttcctcc taatagcatc tttctaaagt ccagatcaaa cttggtatta
      661 ttccatctct tgcggaagaa gaatacgctc acaccactta caaaaatata gataaaagag
      721 atataaatgg gcactatccc ggtaaataag taaaaagtaa gaataacagg cactgtaaac
      781 acagaaacca acacaatcac ccttaaccaa cctagatttc ggaaataatg cagctgaaaa
      841 actttattta gtaaactata acctagtgca taacacaaga ataagatgac ggaagtaccg
      901 aatacataag ccaaacttct tgccatactg gcattgccga tttcaacatg ccaccaaggg
      961 tagccatgaa atatggcttg tccccaaccg taacagtaag cggtagcaaa actagttaat
     1021 gtaaaaaatg caagagaaaa tgaagaattg ataattttat taatgtgttt atttagcata
     1081 acaaagaatg tctatttcca ttaaaaccta actatttttg attactataa taacccgtat
     1141 tacacaaaaa acaaacattt aattcacacc aaattagaaa atttgcttta gtaaggttga
     1201 aaatataact ctaaaacacg ataataaaaa gcttctctgc tagcaatggc tagactgctt
     1261 catcgtcagt ttcgccggta cgggtgcgga taacttgttc aatattcgct acataaattt
     1321 tgccatcacc cacttgccca gaataggatg cattgagaat ggcatcgatc acttcatcgg
     1381 tttggtaatt agaaaccaat atctccacct taattttagg acgaaagtca atgcggctca
     1441 tttggctaag ctcttgttcg gtatgcccat attggcgtcc aaagcctttt acttcggtaa
     1501 tagtcattcc ttgaataccg atttctgaaa gtgcatcttg cacttggtct aattttgaag
     1561 gttggataat ggtagtaatc agtttcatat tatatccttc tctgtttgag ttgccgtaag
     1621 tataaaaagc tattgagggg tatgcaaggt aggaggtatt ttctccgtga aatattctgc
     1681 caaatctccc ccacatacaa gcggttactt tttccaaaaa ttttgcaatt tttttatttt
     1741 tgcccttgaa cagtgcattt tcgtccctat ttatgatttc gtctgaacgg gaaatgcaat
     1801 cccgtttctt attcaaactg aatttattat tataggaatc ataaaaatgg gtaaaatcat
     1861 tggtattgac ttaggtacaa caaattcttg tgttgcggta atggacggcg acaaacctcg
     1921 tgtaattgaa aatgcggaag gggcaagaac aacgccatct atcatcgctt acaccgataa
     1981 agaaacctta gttggtcagc cggcaaaacg tcaggcaatt actaacccga aaaatacttt
     2041 atttgcaatc aagcgtttaa tcggccgtcg ttttactgat gctgaagtgc aacgtgatat
     2101 tgaaattatg ccgtttgaaa tcagcaaagc agataacggc gatgcgtggg taaccgtaaa
     2161 aggcgataaa ttagcaccgc cgcaaatctc tgctgaaatc ttgaaaaaaa tgaagaaaac
     2221 cgcagaagat ttcttgggcg aaccggtaac cgaagcggtt attactgtgc ctgcatactt
     2281 taacgatgca caacgtcagg caactaaaga tgccggtcgt attgcaggtt tagatgtaaa
     2341 acgtatcatc aacgaaccaa cagcggcagc gcttgcttat ggtttagatt ctaagaaaga
     2401 gaaccaaacg attgctgttt acgacttagg tggtggtaca ttcgatattt cgattatcga
     2461 aattgataac tttgacggcg agcaaacttt tgaagtgcgt gcaaccaacg gcgatactca
     2521 cctaggtggt gaagacttcg ataaccgtgt aatcaactac ttagtggaag aattccaaaa
     2581 agaacaaggc gttgatttac gcaacgaccc aatggcaatg caacgtgtga aagaagcagc
     2641 ggaaaaagcg aaaatcgaac tttcttctgc acaagaaact gaagtgaacc ttccatacat
     2701 cacggcagat gcaaccggcc cgaaacactt aaacattaaa gtaacccgtg cgaaattgga
     2761 atctttagtt gaagatttag taaaccgttc gttagagccg ttaaaaaccg ctttagctga
     2821 tgccggttta tcagtaggcg acatcaacga tgtgatttta gtcggtggtc aaacccgtat
     2881 gccgttagta cagaaaaaag tggcagactt ctttggcaaa gaaccgcgta aagacgttaa
     2941 cccggacgaa gctgtggcaa tcggtgcggc ggttcaaggc ggtgtgttaa gtggttcggt
     3001 aacagacgta ttgttattag acgttactcc gctttcactt ggtatcgaaa caatgggtgg
     3061 tgtaatgact accttaattg agaaaaacac tacgattcca accaagaaat cacaagtgtt
     3121 ctcaacagcg gaagataacc aatctgcggt aactatccac gtgttacaag gtgagcgtaa
     3181 acgtgcagcg gataataaat ctttaggtca attcaacctt gaaggtatta accctgctcc
     3241 acgcggtatg ccacaaattg aagtaacctt tgatattgat gctaacggta ttatcaatgt
     3301 ctctgcaaaa gataaaaaca ctggcaaaga gcaacaaatc aaaattcaag catcttcagg
     3361 cttaagcgat gctgaagttg aacaaatggt gcgtgatgca gaagcgaatg cggaagcaga
     3421 caaaaaattt gaagagttag ttcaagctcg taaccaagca gacggtattg ctcacgcaac
     3481 ccgtaagcaa attaccgaag caggcgatgc gttaaacgca gacgataaag cgaagatcga
     3541 agcggctatt tctgagttag aaaccgcagc taaaggcgaa gataaagccg agatcgaagc
     3601 gaaaatcgaa gcgttaatca aagcttcaga accgttaatg caagcagcac aagcaaaagc
     3661 acaaggcggc gagcaaccac aacaatctca aaaagatgac ggcgtggtcg atgcggaatt
     3721 tgaagaagtg aaagataata aataatcttg cgtaacttgt aggggcgaaa tatctttcgc
     3781 cccttttgtg tagatatata ccacctagca cgagccgtgc taggttacac ataattcagc
     3841 ccctttgggg ctgtgcaagc ggtgcttttc aaaggaaatt ttacaaatgc taaaactcta
     3901 ccctacaacg gaaaatgtac agccaccgtt ttataaaata tacgatcata aaagtggcga
     3961 aacggtcatt gccacagaaa cggaaaacag caataccgcg attttaatgg acgattttgt
     4021 ttggtttgag caaattccaa ctaccgaagc tcttttggca gacacttggt ctgtgattga
     4081 aaaccgttcc aaacaaggtt tgctcaaacg agcttacacc aaagattttg aaaaacattt
     4141 agcagacggc aaagtagaaa tttatattgc ggtgaatccg cattgttagg cttttgatag
     4201 cgcaagcgtc cacgcttgtg tcatcttgag ccatcttggc tagatcccat ttaattatat
     4261 aaaactctct ccccttgtgg gagagagacc gaaaaatatt tcgttcagaa atatttttca
     4321 gagagagggg gaattaacca tcctacccct ctcccacaag gggcgagggc aagcggtcaa
     4381 aaacacagaa aaatttacaa acggaacaac aatggcaaag aaagattatt acgaagtcct
     4441 tggactgtct aaaggggcaa gcgagaaaga catcaaacga gcatataaac gtttggcggc
     4501 aaagcatcac ccggataaaa accaaggcag taaagagtcg gaagagaaat ttaaagagat
     4561 taccgaagcc tatgacgtgc tgaccgacag cgagaaaaaa gcgatgtacg accaatacgg
     4621 tcacgccgcc tttgaacaag gcggtgccgg tgcaggcgga ttcggtggct ttggcggcgg
     4681 tggtttcggt ggttttgaag acatcttcag cgaaatgttt ggcggtggct ttggtggcgg
     4741 tggacgtcgc caacgtgtgg tacgtggcga tgatttacgt tacgacatcg agatcaccct
     4801 tgaagaagct gtgaaaggct gtaaaaaaga tattcgcatt caaaccttag ctgaatgtga
     4861 tacttgtcat ggtacagggg cggaagcagg gagcaaagtg gaaacctgtt cgcattgtca
     4921 cggctccggc agagttcgcc gtcagcaagg tttctttgtg actgaggcag tttgtccaag
     4981 ttgtcacggt acaggtaaac gcattgaaaa accgtgccgt tcttgccacg gcgatggacg
     5041 tgtacagaaa gcgaaaaacc tctctgttac cattccggca ggtgtggata ccggtaatca
     5101 acttcgctta tcgagagagg gagctgcagg cgaaaatggc gcaccggcag gcgatttata
     5161 tgtggtgatt cacgttaaag aacacgatat ttttgagcgt gacggttcga atttatactg
     5221 tgaagtgccg attagcttta cccttgcagc tttaggcggt gaaattgaag tgccaacttt
     5281 agacggcaaa ttaaaactca aaattccggc agaaactcaa accggtaaac tattccgtgt
     5341 acgaggcaaa ggggtaacaa gccctcgtgg tggctacgca ggggatttaa tctgcaaagt
     5401 ggtggtcgaa acgcctgtga atttaaccga agaacagaaa gcactattac gacaatttga
     5461 agagagttta gaaggacaag gtaaacatcg tccgaaacac gaaggtttct ttgatggtgt
     5521 gaagaaattc tttgataact taggcaaata aaatcataaa aagtacatat ttcttaaata
     5581 tgtacttttt tattatctat tctttgttga aatctacttc tcggccgtta atttttacac
     5641 ctacatactg caaaaaatag tggaaaaatg accgcttatc atctttctca gaatacttga
     5701 caattaaaat caactattta aaattaatat ttaatagtca ttaattatca aattgataga
     5761 ttgagaaaaa atctacaaca cctataattc tcttcggatt aattacctat cttatttcta
     5821 atttatgagg attctattat gtctaaatgt cctgttacac atttgacaat gaacaacggt
     5881 gcacctgttg ttgataacca aaacagctta acagcgggtc cacgtggtcc attattagcg
     5941 caagatttat ggttaaatga aaaattagcg aacttcgtgc gtgaagtcat tcctgagcgt
     6001 cgtatgcacg ctaaaggttc cggtgcgttc ggtactttca ctgtaactaa cgacatcact
     6061 aaatacactc gtgcggcaat ttttagccaa gtcggtaaaa aaactgaaat gtttgctcgt
     6121 ttcaccaccg ttgcaggtga acgtggtgcg gcagatgctg agcgtgatat tcgtggtttc
     6181 gcattaaaat tctataccga agaaggtaac tgggatatgg tgggtaacaa cacccctgtg
     6241 ttcttcttac gtgacccacg taaattcccg gatttaaaca aagcggttaa acgtgaccca
     6301 cgcacgaata tgcgttctgc aactaacaac tgggatttct ggacattatt accagaagca
     6361 tttcaccaag tgactattgt aatgagtgaa cgtggtattc cggcttcata tcgtcatatg
     6421 cacggttatg gctcacatac ttatagcttc atcaatgcag ctaatgagcg tttctgggtg
     6481 aaattccatt tccatacaca acaaggcatt aaaaacttaa ctaacgaaga agcagccgct
     6541 attatcgcta acgatcgtga aagtcaccaa cgtgatttat acgaagcgat tgagcgtggc
     6601 gatttcccga aatggaaaat gtttgttcaa attatgcctg aaactgatgc agacaaagta
     6661 ccataccacc cgttcgattt aactaaggta tggccgaaat cagactatcc gttaattgaa
     6721 gtgggtgagt ttgaattaaa tcgtaaccct gaaaacttct ttgctgatgt ggaacaatct
     6781 gcattcgcac caagtaactt agtgccgggc atcagcgtgt ctccagaccg tatgttacaa
     6841 gctcgtttat tcaactatgc ggatgctcaa cgctaccgtt taggtgtgaa ccaccaccaa
     6901 atccctgtaa acgctccacg ttgcccggtt catagcaacg ctcgtgacgg tcaaggtcgt
     6961 gtggacggta actacggtag taccattcac tacgaaccaa acagcttcgg caaatggcaa
     7021 gaacaagctc aatatgcaga gccaccactg aaaattaatg gtgatgcagc ccactggaac
     7081 tatcgtgaag acgatgctga ctacttcagc caaccacgtg tattgttcaa tatgatgaat
     7141 gatgaacaaa aacaagcatt attcaataat actgctgcag gtatgggcga tgcattagac
     7201 ttcattaaat accgtcatat tcgtaactgc tatgcctgtg atccggcata tggtgaaggt
     7261 gtggcaaaag cattaggtat gacggttgaa gatgctattg ctgcaagagc aacagaccca
     7321 gcattaggtc aaccgggttt actctaatcc ttagtaaata caaaactcaa agcaaaagct
     7381 ctacaaaaaa gtagagcttt tttattgcta attacttaac caccgtaatt tcccacaagg
     7441 catcaccaag ttgttggtaa tcggtaactt catagccttc ctcttccgcc caatttggaa
     7501 tggcttcggt tgcttgagta cagtcaaatt caatcgttaa gctatcgcct ttattcaatt
     7561 ttgccatcgc cgctttggct tcgactaatg gaaacgggca aacaagccct gaggcaggta
     7621 aacgtacgtt catctttatt actccttaaa aaattaacct tttaaatgct gtgggcggat
     7681 aatgccaatg taattacact caggataaac actaacaccc aaggggaaat accaaatgtt
     7741 tcataaatcg tgcggtgttg aattacattg ctttttagct cttgattaag tggggctaac
     7801 acaccggttc gcatagaagc agaaaacagc ccataaataa ccagtgcaac ccaactgccg
     7861 attaaaccct caccggcacg ataccacgtt cctgtagcac aaccgcctgc ataaataatg
     7921 ccgataccaa acagaaatgc cccaatgatc actgcgagca aaggcaaatc ttccgccgga
     7981 gaactaaaag agccggcttc atacaaaagc caaatcccga tcgattgcac cgtaattgca
     8041 attaaaagtg ccacaaacat acggctattc tttgttacat agagatcacg aaatgctccg
     8101 gtaatacaaa aacgccctct ttgcatcaca aacccgagta gaaagccaca taataatcct
     8161 gtgaataaca taaaaaatac ctctcaacaa attaacgtga gaggtattta aatataaagc
     8221 cgtctagatg gctaataatc tttagcaaaa tgatatgtta ttcagttata aatgctatta
     8281 aatatgtgga attacatcat caggtgcacc taatttattg agtgccactt ttcttggatc
     8341 taccaacttg gattttttta tcatcggttc aaccgttgaa ccttgtacta aaatcgagaa
     8401 agtgactacc gcataagtca ttaacaaaat caaatcacgt acatcaagat tgccttctga
     8461 gctcgatacc accgcagccc ctgccggtac ggaaagtgcc atcgcaaggg ctaatccacc
     8521 acgtaaaccg ccccaagtca taatttttaa ggtgtacggg ttataagtac ggaaacgttt
     8581 taacacttgg tatggaatcc acaggctgat atagcgtgca agcaaacaaa ttggaattgc
     8641 tgccaacatt aacaccccac caataaaggt gaaatcaact aacagtgtac ttaagccgat
     8701 aagcaggaat aacaggtagt ttaatgaatg gtcgatcatc tcccagaagt gatcaagata
     8761 tttttggctc tgttcggaga aaccggaacg gcgagtccag ttgccaatca taataccggc
     8821 aactaccatt gttaatgccc ctgaaacgtg taggtagttt gcaatcacaa agccgactgt
     8881 tggaatcgtt agcgtaatta aaatttcaag gcttccgtca tcggttgcgg aaataaattt
     8941 atgtgccaca aaaccggtta ataagccaaa aacgataccg cctaccgctt cttgcaagaa
     9001 cagtccggta ataccgctaa ggtttggttc ttgtccgcca aaagcaacgg caaagatagt
     9061 ggtaaaaatc accaagccga taccgtcatt aaacagagat tcgccctcca cgtgcatcga
     9121 aaggcgtttt ggggctttca ggcttttgat aattgccaat acggcaatcg ggtcggttgg
     9181 cgaaatcagt gagccaaaca gcaaacaata cacaaagccg agctctaacc caagtagcct
     9241 tgccacgcca taaattaacg caccgatcaa gaaagtagaa actaaggttg aaaataaggc
     9301 ataaactgca atttcccgcc gttgctcttt cattaatggt agtttaatcc caagtgaacc
     9361 ggcaaaaagc aagaacccca gcattccgtt taacaggaag cttttaaaat cgagttgttc
     9421 aaaaatggaa atggcaagtt tatcaacatt aaaccagccg agagaaccga aggtaagaat
     9481 aagaagggag ccgacaaggg cagaggctgt aattgcaata gtggtttgaa tattttcgtt
     9541 taattttcgg gtaaaaaacg aaataaacat cgcaagccca aacagcaagc agatataaga
     9601 gtagagttgc ataacattta cctataaata taaaaactgc cgctagtgta aacgctgttt
     9661 aacagaatag ctacataaaa aataggcaga atacaatttg ataacattct gcctatttag
     9721 ggttatgcag ttgccaataa tttttctaaa atttgataat aaatttcgcc acaatgtgcc
     9781 aaatcatccg cactcacaca ctcattcact ttgtgaatag tggcgttcag tggtccaaat
     9841 tccactacct ctgcccccat taatgcaata aaacgaccgt ccgaagtacc gccacctgtg
     9901 tctaaacgag gcgtaatttt tgtgacattt tcgaccgctt gtaaggcggc ttcgaccaat
     9961 tttccattgc cggcaaggaa tggtttgcct gataaattcc aacttattcg gtatttcaaa
    10021 ccgtgttttt cgagcatttc cgctactttg gctttgatga tttcatcggt cacttcagtg
    10081 caataacgta agttaaactg cacataaagc tcgcccggaa tcacattatt actgcctgtg
    10141 ccggctttga tattggcaat ttgcaaactg gtaggcggga aaaattcgtt accgttatcc
    10201 cactgataag tggtcagctc ggttaaaaaa cccagtgacg tatgcaccgg attttccgcc
    10261 aaatgtggat aggcaacgtg cccttgaatg ccctcgatat agagatctgc cgtaattgaa
    10321 ccacgtctgc cgtttttaat cacatcgcca aacaccttgc tactagacgg ttcgcccact
    10381 accgcataat gtaccgcttc attgcgagcc attaaggttt caaccacttt taccgtaccg
    10441 tctttggctg ctgcctcttc atcggaggta atcaataatg ccactttgcc cttatggttt
    10501 gggtgatgtt gcacgaaagt ttctgccgcc acaactaacg ccgagagcga gcctttcata
    10561 tctgccgccc ctcgcccata aagcattcca tctacaatct cagccgaaaa cggcggataa
    10621 gcccattggc tttcatcgcc taccggcacc acatctgtat gcccggcaaa cacaatgcaa
    10681 ggctctgttt taccattttc cgagccgtgc gttgcccata aattcaaggt gtcgccaaac
    10741 ggcaaccatt caatattaaa gcccagtttt tcaagacgtt gtgcaatttc ttgctgacag
    10801 cctttgtctt gtgggctgat ggaatcacgg cggattaggt tctgtgcaag ggaaataatt
    10861 tcatttttca taggttacaa gcggttgttt tgggtgaatt ttttgctata tatcctgtag
    10921 gggcgggtcc tgtgcccgcc cgaacaatcc taaagactac ggacaggcac aggacctgtc
    10981 cctacaagca ggggaaaaaa ttaattaaac gcagccacat actctttctc attaaaacca
    11041 atcaaagcaa tatcctcttt aatcacaatc gggcgtttaa ttagggtcgg ctgttcggtt
    11101 agcactttta atgccgactc acggttaagg ttgtttttaa tttcctcatc aaggtttcgc
    11161 caagtggtgc tacgtttatt aactaagttt tcccaaccga attttgcttc catttccact
    11221 aaccaatcgg catttaaacc gtccacacgg taatcgtgca gttgtgggtt ttgattatga
    11281 tcttcgagcc atttcaaggc tttttttact gtgtcgcaat ttttaatgcc ataaactaag
    11341 gttgtcatca tttttcctca ttatctgatt ccagcattgc ctgccagatt tttaacgcat
    11401 cggcggtttc tgccacatcg tgcacccgta aaattttcgc cccattttga gcggctaata
    11461 acgcccctac tacagagcca agtagccgtt gttctaccgg tttatctaac accgcaccaa
    11521 tcattgattt acgggaaagt ccggcaagca cagggaagcc tgaatccaca aaggctttaa
    11581 ggtgtttcaa taattggtaa ttgtgtttca cgcttttacc aaagccaaaa ccggggtcta
    11641 aaataatgtg ttctttggga atgcctgcgg tgatgcactc gaaaatccgt tgatttaaga
    11701 aatctgccac atcttccaac acatcatcat agtgcggatt ttgttgcatt gtttgcgggt
    11761 tgccttgcat atgcattaaa caaaccggca agcccaattc tactgccgct gccaacgcat
    11821 tcggctcggt taaggctcga atatcgttaa tgatatccat accgactttt gccgactctt
    11881 tgaatacttc tgctttggag ctatcaaccg aaatcaagca atcaaaacgg ctgcggatcg
    11941 cctccaccac cggcacaaca cgctctaatt cttgttctaa gctcacaatc gccgcattag
    12001 ggcgggtgga ttcaccgcca atatcaataa tgcttgcccc atcagctaac attttttccg
    12061 cttggaacaa ggctttatcg agggaaaaaa acttgcccga atcggaaaat gaatccggcg
    12121 tgaagtttaa gatccccata atttgcggtg tggttaaatc taacaagcgg tcattttttt
    12181 gaaaattttt gaaatggatt tgcatatttt tgcttatatt ttgttggtgc aagcgtccac
    12241 gcttgtacca ctctatgttg atttacagca caagcgtgga cgcttgcgct atcttactct
    12301 ctcattaagt tatttagtaa ttagccctta attttgccaa tacgcctttt aaagttttat
    12361 ccagcggggc ggtaatgacc atttcttcgc cggttttggg gtgttcaaaa cgaatagcat
    12421 gggcgtgcag aaataaacgc tgtaagccca cttctttcat tttgctgtca aattccgcat
    12481 caccatattt gtcatctaac gcaatcgggt gtccggcata ttgggtatgc acacggattt
    12541 ggtgggttct tccggtaata ggcgaagctt tcaccaaagt ggcattggca taacgctctt
    12601 caatgctgaa acgggtttcg gacggtttac cctcttcact cacccgtaca attcgctcac
    12661 cgctggcaag ttcgtttttt agcaatggag ctttaatcac tttggtatga gcctgccatt
    12721 gccctcgcac aagggcaaga tagtcttttt gtactacttt ttcacgcagt tgttcgtgca
    12781 aggaacgtaa cgccgaacgc tttttcgcca ccagcaaaat gcctgatgta tcacggtcta
    12841 tacggtgtac caattccaag aaacgagcct gtggacgtaa tgcacgcaag gcttcgatca
    12901 caccaaaact taaaccactg ccaccgtgta ctgcaatgcc tgaaggtttg ttaattacta
    12961 gcattgactc atcttcatac agaatttggc tctccagctc cgccactttg tttaatttag
    13021 tcgaaattgg ggcttcattt ttttccgcca cacgcaccgg cggcacacgc actaaatcat
    13081 caggctgtaa tttatattcg ggtttgtttc gtcctttatt cacccgcacc tcgccttttc
    13141 gcacaatgcg gtaaatcaaa cttttcggca cgcctttgag ctttgccaat aaaaaattat
    13201 ctaaacgctg tccggcttca tcttcactga tcgtaaaaaa ttgaacgccg gcactaatta
    13261 ctttttctgt tgtcattatc ttgtctttta gagaaaattt tgctctaaat tctagcacaa
    13321 aaccgcttag cgagtgaggc aaattcgcta ggcttatttt tcattttaat tttaaggaaa
    13381 caatatgact gaaaaagtca ccgaaacagc tccaaacatt gacgtggttg ccgaaaccga
    13441 aaaagtaatc cacaaagtca gtaatatgaa tattgaaact atgctaaatg agtggattat
    13501 cccttatggc accaaaattt tactggcgat tgcgattttt gtagtcggga aatttcttgc
    13561 ccgcctaatt agccgtttac tcggtaaagc cgcattaaaa tcaaccaaag atgaaatgct
    13621 gcaaagtttt attgtctcaa tcagctattt tttactgctg ttaattgtgg tgattgcctc
    13681 gctttcacaa atcggcatta acaccagctc gctggtcgca ttaatcggtg ctgccggttt
    13741 agccatcggt ttatcattac aaaactcatt acaaaacttt gctgccggcg tgatgttgtt
    13801 aatcttcaag ccatttcgca aaggggattt aatcgaaacc ggcggaatga ccggcgtggt
    13861 tgaacaaatg gggcttttag tgttggaact tcgcaccggc gataacaaaa ccgtgttatt
    13921 accaaacggc aaagtgtttt ctgacagcat catcaactac tctaacaacc cgacacgccg
    13981 tattgatttc acctttgata tttcttatga atctaactta aaagaggcga aagagattat
    14041 ccaacgcatt ttagacgcca atacttatgt attaaaagat ccggcacctg tagtagcagt
    14101 cggcgcttta gcaccgcata gtgttcaact tgttgttcgc ccttgggttc agacaccaaa
    14161 ttactgggca gcatattggg aaattatcga acaagtaaaa ttagcctttg gtgaagcagg
    14221 tatatctatt ccttacaacc aaatggaatt gcatattaaa agcggttcac tagaaaataa
    14281 agcataagaa aaaagcctgt aagcggtctt ttttcgataa aattttgcaa attttgggcg
    14341 aaggtttata ctttagctaa ataatctacg aacaggagca tattatgcgt attgatacct
    14401 ctgcactttg cgatctttat tctgaccaag ttgatgtggt tgaaccaatt ttctcaagct
    14461 ttggcggtgc ttcttccttc tttgggaaga ttaccacggt taaatgcttt gaaagcaacg
    14521 gtttaattgc tgaagttttg gaagaagagg gtgaagggcg agtgctgtta gtcgatggtg
    14581 gcggtgcggt tcgtcgtgcc ttaattgacg cagagctggc tcaacttgct gtagataacg
    14641 gctgggaagg tatcatcgtt tatggtgcgg ttcgccaatt agatattttg gaaagattag
    14701 atatcggtat tcatgcttta gcgccaattc cagtgggagc agataatacc gacattggcg
    14761 aagtggatac gcctgtgaat tttggcggtg taaccttctt ccccgaagat tacgtttatg
    14821 ctgacttaac cggcattatt ctttcgcaag agttgttgga tttaaacgac atcagcgaat
    14881 aaatatttgc aaaaaaatac caaaaaccga ccgcttggtc ggttttttac tactgcagtg
    14941 tttttaatgc cgcattatat tcttgagatt gctgcaataa aacccgagca gcttcacgta
    15001 atttatctac atcctcttcc ggcaaataaa atgatgttgc aatatttagc acatcttttt
    15061 ttaaatcacc atcaggtaat tcttttaaac ctaaactgac aaaatgcatt tcgatctttg
    15121 atggctgttt atttgcatat tcattccaac catctgtaaa ctggcgataa cgttgtaaat
    15181 taatttgtgt cgttctatca attggcacat taactattgt attcactaca tcagccaccc
    15241 ccggtacatt tgcggtctta tcgatctcgc tagatacttc attttgcgca tttacattaa
    15301 tcactacaat atttttcacc ctaagctgat gaatatactg gtacatctct tcaataccca
    15361 taacatcaga tatttccagc acactggcaa gccctaaatt atctgttaat ccaccatcaa
    15421 ctaaatggat aaaggggcgt tctttactat cttgataaag gctgagtata tgattcgttt
    15481 cttcaatatt ttttgtaatt agtccatcaa ttgctttttc tctagcacta aattcttgtg
    15541 gcatactaaa atggcaattt ccaccattgt tattcagtgt aagcggcgca aaaatcagag
    15601 gaacagaact agaagcagca acagcacggg aaatttctaa atcattcaaa tttaaacaaa
    15661 gcccatcaaa ggtttcttgc gtaaaggtca gtttttgacc aatgttcatg tctgttgcgc
    15721 taatcacagc aaaaggtcct ttacgatttt tcactaaatc accaaacttt ttaccatgat
    15781 aaagggcaaa atttaagcgt tcttgcaata aatcaccacg cccatattga ggagaactta
    15841 aacgaggaag attggataac gaaaacacct ctgtaataat atctttttga aagttcgctt
    15901 ttaaaaaacg gtcagcaaat ttaggaatga tatcctttcc ttccaacgca aaataagtgg
    15961 ctaatatcga tccacctgat acgccaaagg caatatctat attctctaat aaagtattac
    16021 ctttatttgt ttctttcacc cttacctttt taaactcttc caacactcca taaccaagcg
    16081 ccgccgctct tgttccacca cctgaaaaca tgatgacaac aatattaccg tcttttgcac
    16141 tttcagcgat cacatttttt tgtcgataac ctctttcaac atttacctgt ttaattgttt
    16201 caactggctt ataaacaacc aaactgcaag cagataacac tagcgtaaag gcgaagatga
    16261 aaagctgttt tattttgttt agaa
//
LOCUS       DANLZD010000052        16196 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.052, whole genome shotgun sequence.
ACCESSION   DANLZD010000052 DANLZD010000000
VERSION     DANLZD010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16196)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16196)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16196
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.052"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            172..2394
                     /gene="glgB"
                     /locus_tag="PXE26_001204"
     CDS             172..2394
                     /gene="glgB"
                     /locus_tag="PXE26_001204"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein GlgB"
                     /protein_id="HDL5593794.1"
                     /translation="MQDYTYSEKDAFFVERLSSGSCNDPFSYLGIHPSNNGVIIRVFL
                     PSAIACQVIDLNGKPVSSMLKIDDRGFFIAELIGKKTDFSYRLLVEYPDSTVDIEDPY
                     RFKTHIQELDNWLFAEGKQLRPYEKLGAHLVTQNEVGGVHFSVWAPNAQRVSVVGDFN
                     HWNGLVHSMRFHPDSGIWDIFLPNVKKGECYKFEVLDRNGVLRLKSDPYAFASQFRPE
                     TASIVSGLPSIVPAEKTCRNANAPDKPISIYEVHLGSWRRNIENNYWLSYEELADELI
                     PYVKDMGFTHIELLPISEFPFDGSWGYQTTGIYSPTSRFGTPEGLSYFIQKAHDKGIG
                     VILDWVVGHFPVDEHGLVYFDGTHLYEHSDPKEGYHKDWNTLIFSYGRNEVSNYLSGN
                     ALYWIERFGIDALRVDAVASMIYRDYSRSDGEWIPNKYGGRENLEAIDFLRHTNNILR
                     DESQGGASIAEESTSFAGVSHSTERGGLGFNYKWNMGWMNDTLRYMQKDPIYRRYHHN
                     LMTFGMTYQYSEQFVLPLSHDEVVHGKGSLLNKMPGDCWQKFANLRAYYGYMWGYPGK
                     KLLFMGNEFAQGKEWNFAESLDWYLLGEEGGEWHKGVLGWVKALNHLYTQTPALFEQD
                     YNPEGFEWLVVDDHDNSVFAFERKAKNGDSVIVVSNFTPIVRENYRFGVNELAEYQEI
                     LNSDLACYCGSNVSNANRFASELIASHGKAYSLSITLPPLSTIFLKRAADKKTKQNKT
                     "
     gene            2418..4430
                     /gene="glgX"
                     /locus_tag="PXE26_001205"
     CDS             2418..4430
                     /gene="glgX"
                     /locus_tag="PXE26_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HDL5593795.1"
                     /translation="MHYFRGKPFPLGNKLDRQAGEFGTNFAIVSQNATAIELCLFDEN
                     HHETRIPMFSSGDTWHIFVAGVQAGTKYGYRVKGIQDEQAGLLFNPQKLLTDPYAKAI
                     EGKPDLSSAEAAAWYKWNDERDNASLAPKSIVIDEHFDWENDSQLFTPWAETIIYEMQ
                     VKGFSQRNFQIPSDIRGTFAGLAHPVSIDYLKTLGITAVELLPVTYHIDETHLQKQGL
                     VNYWGYNVLGNFAIDPNLAADKQNPLKEFKQLVKTLHQAHIEVIMDIVFNHTAESDKN
                     GPMLSFRGIDNTAYWLDKQGEYENWTGCGNTLNLSNPYILCWAIDCLIYWVEECHIDG
                     FRFDLASILGRTPSFSEKADFFTALKSHSKLTHIKLIAEPWDIGVEGYQLGQFPEPFY
                     QWNDCYRDDIRRFWLQNQGDWGLLARRLAGSDDVFTKYSVSKSINFITAHDGFTLQDL
                     TSYQQKHNWANGEQNRDGHNSNYSNNHGVEGQTADELVKKQREITACSLLATLFLSAG
                     VPMLLAGDEIGHSQQGNNNSYCQDNEITWLDWENMNHTRLDYVRSLIRLRKKIALLSK
                     QNNWWQEDSVQWLNPSAQLMNIDDWHNQHNGLVVLLQEEWLLLFNANRQPQPFLLPQG
                     NWKVVLEQAQGILMTDTQAVTLNNMGVCVLQKSDVMFANKLETQYA"
     gene            4423..5736
                     /gene="glgC"
                     /locus_tag="PXE26_001206"
     CDS             4423..5736
                     /gene="glgC"
                     /locus_tag="PXE26_001206"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HDL5593796.1"
                     /translation="MLNQESTALVARQDLTNDTLVLILAGGRGSRLYELTDKRAKPAV
                     YFGGSRRIIDFALSNCINSNLLKIGVITQYAAHSLLRHLQRGWSFLPYERNQYIDMLP
                     ARQQLDENTWYRGTADAVYQNMAMMKSHYRPKYVVILAGDHIYKMDYTQMLKDHVDQG
                     AKCTVGCIEVPRSQATEFGVMAVNEKLKVKEFVEKPADPPAMPGKPDSSLASMGIYVF
                     NADYLYEMLEKEASTPGTSHDFGKDIIPKAVEQGVLYAHPFERSCKGRNASGAIYWRD
                     VGTIDSYWAAHMDLVSEDPELDLYDESWPIHGRPQQTAPARFFYNRARARTLDNSLIA
                     GGCVITDAEISNSVLFNRVHVEAESVIEHTVILPQVTIGKNCVIKRAVIDRHCVIPDG
                     LEIGVNAEEDAKRFRVSKNGIVLVTQSMLDKLAGKEANSDIKYTI"
     gene            5859..7295
                     /gene="glgA"
                     /locus_tag="PXE26_001207"
     CDS             5859..7295
                     /gene="glgA"
                     /locus_tag="PXE26_001207"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HDL5593797.1"
                     /translation="MKVLHICSEMYPLIKTGGLADVMGALPFAQQQAGNDVRVLIPYY
                     PKVAQTLGETVEVATIGTFAGTVSVRFAYFNGLGVYVIDAPHLFMRDGNPYHDSNYQD
                     YPDNYKRFALLGYIGAQLAQGLDHWWGTAQVLHAHDWQAGLACAYLKSWGSNVKTLFT
                     IHNIAYIGRFNAFHLAELGLPWEFFHAEGLEFYGEISYLKAGLYFADRITTVSPTYAR
                     EITEEIAGAGLHGLLATRQYQGRLRGILNGVDAEVWNPETDTHIVVNYRANYMHGKAK
                     NKAELQRIFGLPEDKEALLMVMVTRLTEQKGADFLLANIDTLMQHKVQIIVLGSGSPD
                     LENALRYFQHKYPNQIGVKIGYDEALSHQIIAGGDLILVPSRFEPCGLTQLYGLKYGT
                     LPLVRRTGGLADTVVDSHKESIENRSATGFVFDYPDAPAFLEAAMRAISLWQKQKLWS
                     SVRQNALAQDFGWAKVAEQYQNLYHEII"
     gene            7390..9890
                     /locus_tag="PXE26_001208"
                     /pseudo
     CDS             7390..9890
                     /locus_tag="PXE26_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651737.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan phosphorylase"
     gene            complement(9977..10693)
                     /gene="trmJ"
                     /locus_tag="PXE26_001209"
     CDS             complement(9977..10693)
                     /gene="trmJ"
                     /locus_tag="PXE26_001209"
                     /EC_number="2.1.1.200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ"
                     /protein_id="HDL5593798.1"
                     /translation="MQILNQIQIILVETSLPANIGSAARAMKTMGLTHLRLVAPKQPL
                     DEQAEALAAGAKDVLDNAQCYATFDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELV
                     VNRTNLGKVAIVFGRERVGLTNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRM
                     AYLQNSGEKQPLAADKDYPTAQALEHFFAHTERLYTELGFIRNDSVMLKLRRLYQRAE
                     LETNELNLLRGMLTAVEKAN"
     gene            10873..12411
                     /gene="pntA"
                     /locus_tag="PXE26_001210"
     CDS             10873..12411
                     /gene="pntA"
                     /locus_tag="PXE26_001210"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HDL5593799.1"
                     /translation="MLIGVPRELLDGETRVAATPKTVEQIKKLGFDVLVEQDAGFKAS
                     FEDNTFLNAGANIGTQQEVWNADIIFKVNAPTEAEIELIKEGVTLVSFIWPAQNPQLM
                     EKLQSKKINVLAMDAVPRISRAQALDALSSMANISGYRAVIEAANAFGSFFTGQITAA
                     GKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDSRPEVKEQVKSMGADFLEIDFEE
                     EGGSGDGYAKVMSEEFNRRAMALYAEQAKEVDIIITTAAIPGKPAPRLITKEMVDSMK
                     PGSVIVDLAAATGGNCEYTKAGEIVVTDNQVKVIGYTDFPARLPTQSSQLYGTNLVNL
                     LKLLAPNKDGQIEINFDDVVLRGVTVVRDGELTWPAPPIQVSAQLQKQAAAPQAVKKE
                     EKPADPRVKYGVMAAAGVLFLWLASVAPAAFLSHFTVFVLACVVGYYVVWNVSHALHT
                     PLMAVTNAISGIIIVGAVLQIAQPTGNFFIDILAFIAILVASINIFGGFKVTQRMLAM
                     FRKG"
     gene            12426..13871
                     /gene="pntB"
                     /locus_tag="PXE26_001211"
     CDS             12426..13871
                     /gene="pntB"
                     /locus_tag="PXE26_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HDL5593800.1"
                     /translation="MSFGFVTAAYIIAAILFIMSLAGLSKHETAKAGCWYGIVGMAIA
                     LVATIFGPQSHGTIWILIAMAIGGFIGVKKALKVEMTEMPELVAILHSFVGLAAVLVG
                     FNSYGLHTNALMPANLDETAQAAFLAEQATLANIHNVEVFLGIFIGAVTFSGSLVAFG
                     KLSGKLFGRKVSSAALNIPHKHKWNLAAIIVSVFLMIVFLNNPHNIFPVLIMTIIALV
                     FGWHLVSSIGGADMPVVVSMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYI
                     MCKAMNRSFISVIAGGFGNEVQSGKGDEEYGEHRETKAEEVAEMLKNASSVIITPGYG
                     MAVAQAQYPVAEITAKLREKGVNVRFGIHPVAGRLPGHMNVLLAEAKVPYDVVLEMDE
                     INDDFEETDVVLVIGANDTVNPAALDDPSSPIAGMPVLEVWKAQNVIVFKRSMAVGYA
                     GVQNPLFFKENTQMLFGDAKERVDDILRALN"
     gene            complement(13938..14864)
                     /locus_tag="PXE26_001212"
     CDS             complement(13938..14864)
                     /locus_tag="PXE26_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5593801.1"
                     /translation="MKPIFLEIRHLRTLIALKESGSVSLAAKRVHLTQSALSHQIKLL
                     EEQYDLTLFERKSSPIRFTPAGERLIKLAYDILPKVIEAELDLARVKQGEVGEVRVAV
                     ECHTCFDWLMPAMDTFRQHWPLVELDIVSGFHTDTVGLLLSHRADLAIVAEEEDSAGI
                     IYKPLFSYEMVAICSKDHPLATKDVWEAEDFKDETLITYPVPDDMLDLLRKILGPAGI
                     KVTRRNSELTIAIIQLVASRRGIAALPYWAVKPYLDRGYVVARKITQQGLYSTLYGAI
                     READATLAYLDDFHDTVKSQSFATLPGLMVLE"
     gene            complement(14974..16089)
                     /gene="asd"
                     /locus_tag="PXE26_001213"
     CDS             complement(14974..16089)
                     /gene="asd"
                     /locus_tag="PXE26_001213"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HDL5593802.1"
                     /translation="MQNVGFIGWRGMVGSVLMDRMVEENNFANINPVFFTTSQAGQKA
                     PVFGGKDAGELKNAFDIEELKKLDIIVTCQGGDYTNEVYPKLKETGWNGYWIDAASAL
                     RMKDDAIIVLDPVNQHVISEGLKNGIKTFVGGNCTVSLMLMAIGGLFEKDLVEWVSVA
                     TYQAASGAGAKNMRELLSQMGELEDSVKAELANPASSILDIERKVTAKMRAEDFPTEN
                     FGAALGGSLIPWIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVDGLCVRIGALRC
                     HSQAFTIKLKKDIPLAEIEQIIAAHNEWVKVIPNDKETTLRELTPAKVTGTLSVPVGR
                     LRKLAMGGEYLAAFTVGDQLLWGAAEPVRRILVQLTQ"
BASE COUNT         4654 a         3120 c         3693 g         4729 t
ORIGIN      
        1 tgatctatgt cacaaaattt aaggtttgat gatttaaact aaagattaaa acgattttat
       61 tttgtgattt agctcaaaaa atggcgtaaa tccacttctt ttatttctat ttagtgatag
      121 agtgagaact attgaaattt aagtattaaa cgctttaagc aaggagtgcc gatgcaagac
      181 tatacttatt ctgaaaaaga tgcttttttt gttgagcgac tttcttcggg ttcttgtaat
      241 gatcctttct cctacctagg tattcaccct agcaataacg gcgttattat tagggtattt
      301 cttccttctg ccatagcttg ccaagtgatc gatttaaacg gaaagcctgt gtcatcaatg
      361 ctaaaaattg atgatagagg cttttttatt gcagagctga ttggtaaaaa aacagatttt
      421 tcttaccgct tgttggtgga ataccctgat tcaacggtgg atatagaaga cccttaccgt
      481 tttaaaaccc atattcaaga gcttgataat tggttgtttg cggaaggaaa acaacttcgc
      541 ccgtacgaaa aattaggcgc acatttagtc acacaaaatg aagttggggg tgtgcatttt
      601 agcgtctggg cgccgaacgc tcagcgggtt tccgtggttg gggatttcaa ccactggaac
      661 ggcttggtac attcaatgcg attccacccc gattccggta tttgggatat tttcctgccg
      721 aatgtgaaaa aaggggagtg ctataaattt gaagtgttgg atcgaaacgg cgtgctacgg
      781 ttgaaatccg acccttacgc ctttgcctcc caattccgcc cagaaaccgc atctattgtt
      841 tccggcttgc caagcattgt gccagccgag aaaacctgcc gtaatgcgaa tgctcccgat
      901 aaaccgattt ccatttatga agtgcattta ggctcttggc gacgcaacat tgaaaacaat
      961 tattggctta gctatgaaga gcttgccgat gaactcattc cttatgtgaa agatatgggc
     1021 tttacccata ttgaattgct gcctatttcc gaatttccgt ttgatggctc ttggggttat
     1081 caaaccaccg gtatttattc gccaaccagc cgttttggta cgcctgaggg cttgagttac
     1141 tttatccaaa aagctcacga taaaggcatt ggtgtgattc ttgactgggt agtggggcat
     1201 tttccggtag atgaacacgg cttggtttat tttgatggaa cgcatttata cgaacattcc
     1261 gatccgaaag agggctacca caaagattgg aataccttaa tttttagcta cggcagaaat
     1321 gaggtgagca attatttgtc tggtaatgca ctttattgga ttgagcgttt tgggattgat
     1381 gcgttgcggg tggatgcggt ggcgtcaatg atttatcgtg attactcacg ttcagacggc
     1441 gagtggattc caaataaata tggcggacgt gagaacttag aggcaatcga cttcttacgc
     1501 cacaccaata atattttgag agacgaaagc caaggcggtg cgagcattgc agaggagtcc
     1561 acttcttttg ccggagtgtc tcactcaact gaaagaggcg gtttgggctt taattataaa
     1621 tggaatatgg gctggatgaa cgacacttta cgctatatgc aaaaagatcc aatttaccgc
     1681 cgttatcacc acaatttaat gacttttggt atgacctacc aatacagcga acagtttgtg
     1741 ttaccgcttt cacacgatga agttgttcac ggcaaaggtt cattgctgaa taaaatgccg
     1801 ggggattgct ggcaaaaatt tgcgaactta cgagcctatt atggctatat gtggggctat
     1861 ccgggcaaaa aattgctctt tatgggcaac gagtttgctc aaggtaaaga gtggaatttt
     1921 gccgagagct tagattggta tttactcggg gaagaagggg gcgaatggca taagggcgta
     1981 ttgggttggg taaaagccct taaccattta tacacccaaa cccctgcact gtttgagcaa
     2041 gattacaatc ctgaaggttt tgagtggtta gtggtggacg atcacgataa ttcggtgttt
     2101 gcttttgagc gtaaagccaa aaatggcgat tcggtgattg tggtgagtaa tttcaccccg
     2161 attgtgcgtg aaaattaccg ttttggggtg aatgaattgg cagaatatca ggaaattctc
     2221 aattctgatt tagcttgtta ttgcggtagt aatgtcagca atgcaaaccg atttgccagc
     2281 gagttaattg catcgcacgg taaagcctac tccttgagca ttactttgcc accgctatcg
     2341 actatcttcc tcaaaagagc cgcagacaaa aaaacaaaac aaaacaaaac ataacttaaa
     2401 gaaacataaa aaataatatg cactatttta gaggtaagcc ttttccttta ggcaataaac
     2461 ttgatagaca agcgggtgaa tttggcacaa attttgccat tgtttcgcaa aatgcaaccg
     2521 ctattgagtt atgtcttttt gatgaaaatc accacgaaac ccgtattccg atgttttctt
     2581 ccggagatac ttggcacatt tttgtagcag gtgtacaagc agggacaaaa tatggctaca
     2641 gggtgaaagg catacaagat gaacaagccg gtttgttatt taatccgcaa aaattattga
     2701 ctgatcctta cgctaaagcg attgaaggga agccggattt aagtagtgca gaggcagccg
     2761 cttggtataa atggaacgat gaacgggata atgcctctct tgcacctaag tctatcgtga
     2821 ttgatgagca ttttgattgg gaaaatgata gccagttatt cactccttgg gcagagacta
     2881 ttatttatga aatgcaggtg aaaggtttta gtcagcggaa ctttcagatt ccaagcgaca
     2941 ttcgaggcac ttttgccggt ttggctcacc ctgtttcgat agactattta aaaaccttag
     3001 gaatcaccgc agtagaactt ctacccgtta cttaccatat tgatgaaacc catttgcaga
     3061 aacaagggct tgtgaattat tggggctata atgtattagg taattttgct attgatccga
     3121 atttagcagc agataagcaa aatcctctta aagagtttaa acagctcgta aaaacattac
     3181 atcaagcaca tatcgaagtg attatggata ttgtgtttaa ccacacagct gagagtgata
     3241 aaaacgggcc gatgctaagt tttagaggca ttgacaatac agcttattgg ctagataaac
     3301 agggcgaata cgaaaattgg actggctgtg gtaatacctt aaatttgagc aatccttata
     3361 tactctgctg ggcaatcgat tgcttaatct attgggtgga ggagtgccat attgatggat
     3421 tccgctttga tcttgcctca attctaggta gaacaccgag tttttctgaa aaagcagatt
     3481 ttttcacagc acttaaaagc cattctaaat taacacatat taagttgatt gctgagcctt
     3541 gggatattgg tgtagaaggt tatcaattag ggcaattccc tgagcctttt tatcagtgga
     3601 atgattgtta tcgtgatgat atacgccgtt tttggttaca aaaccaaggt gattgggggc
     3661 ttttggcacg gcgattggca ggaagtgatg atgtgtttac taaatattcc gtttcaaaaa
     3721 gtatcaattt tattacggca cacgatgggt ttacgttaca agatctcacc agctatcagc
     3781 aaaaacataa ttgggcaaat ggtgaacaaa accgagacgg gcataatagt aactacagca
     3841 ataaccacgg tgttgaaggg cagacagcag atgaattggt aaaaaaacag agagaaatca
     3901 ccgcttgtag tttgcttgct acgctctttt tatcggctgg tgttccaatg cttttagccg
     3961 gtgatgaaat cggacatagt caacaaggta acaataatag ttattgccaa gataatgaga
     4021 tcacttggct agattgggaa aatatgaatc acacacggct ggattatgtt cgtagtttaa
     4081 tccggttgcg taaaaaaatc gctttgcttt ccaagcagaa taattggtgg caagaggatt
     4141 cggtacaatg gttgaatcct tctgctcagc taatgaatat tgacgattgg cataatcaac
     4201 ataatgggct tgtcgtttta ttacaggaag aatggctgct tttattcaat gctaatcgac
     4261 aacctcaacc gtttttactg ccacaaggca actggaaagt tgtgttggag caggctcaag
     4321 gtattttgat gacagacacg caagcggtta cgctcaataa tatgggtgta tgcgtacttc
     4381 aaaaaagtga tgtaatgttc gctaataaat tggagacaca atatgcttaa ccaagaatca
     4441 acggctcttg ttgcaagaca agatttaacc aacgatacct tagtattaat tcttgcagga
     4501 ggacgaggtt ctcgcctata cgaattaacc gataaacgtg caaaaccggc agtctatttc
     4561 ggtggtagcc gccgtattat tgattttgcg ttatcaaatt gtattaactc gaatttatta
     4621 aaaatcgggg tgattaccca atatgcagca cactctttgt tgcgccattt acaacgtggt
     4681 tggtcatttt taccttatga acgtaaccaa tatattgata tgttaccggc acgccaacag
     4741 ctagatgaaa acacttggta tcgtggcaca gcggatgcgg tgtatcaaaa tatggcgatg
     4801 atgaaatcgc actatagacc aaaatatgtg gtgattttag caggggatca tatctataaa
     4861 atggactaca ctcaaatgct gaaagatcac gtcgatcaag gtgcaaaatg tactgtaggt
     4921 tgtatcgaag tgcctcgctc gcaagcaaca gagtttgggg taatggcggt gaatgaaaag
     4981 ctgaaagtga aagagttcgt cgaaaaacca gctgatccac ctgcaatgcc gggaaaaccg
     5041 gattcctcgc tagcatcaat ggggatttat gtatttaatg cagattatct atatgaaatg
     5101 ctggaaaaag aagcctctac accgggaacc tcacatgatt tcggtaaaga tattattcca
     5161 aaagcagtag agcaaggtgt gctatatgcc cacccatttg aacgttcttg taaagggcgt
     5221 aatgccagtg gggcaattta ctggcgagat gtcggtacga ttgacagcta ctgggctgcc
     5281 catatggatt tagtttctga agatccggaa ttagatttat atgatgaatc ttggccgatt
     5341 cacggtcgtc cgcaacaaac tgcaccggca cgttttttct ataatcgtgc gcgtgccaga
     5401 accctagata actcactgat tgcgggtggt tgtgtgatta ccgatgcgga aatcagtaat
     5461 tcggtcttat ttaaccgtgt tcacgttgaa gcggagtcgg tgattgaaca cacagtgatt
     5521 ttaccgcagg tgactatcgg taaaaattgc gtaattaagc gcgctgtgat tgacagacat
     5581 tgtgtaattc ctgatggctt agaaattggt gtaaatgccg aagaagatgc gaaacgtttt
     5641 cgtgtcagca aaaatggcat tgtattagtg acacagtcaa tgttagataa attagcggga
     5701 aaagaagcta attcggatat taaatataca atttagtaag agatgatata atgcttcgag
     5761 tttgtcattt gaggtcgcaa gctcgaagta ttgttatgat taaagcgctt caagcggtct
     5821 tatttttcaa ctattttaca catagaaaac ggttaaaaat gaaagtttta catatttgct
     5881 ctgaaatgta ccctttaatt aaaacaggcg gtttagctga tgtaatgggg gcattgccat
     5941 ttgcgcaaca gcaagctggt aatgatgtca gagtgttaat tccttattac ccgaaagtcg
     6001 cgcaaacttt aggggaaacg gtagaagttg ctactatcgg cacttttgcc ggaacagtct
     6061 ctgttcgatt tgcttatttt aatggcttag gcgtttacgt tatcgatgcg cctcatttat
     6121 ttatgcgtga tggtaaccct taccacgaca gcaattatca agactatccg gataactata
     6181 aacgctttgc tttattaggt tacattgggg cgcaattagc ccaaggtttg gatcattggt
     6241 ggggaaccgc tcaagtttta cacgcacacg attggcaagc agggcttgct tgtgcatatc
     6301 ttaaaagttg gggaagcaat gtaaaaacgc tcttcactat tcataatatt gcctatatcg
     6361 ggcgctttaa tgccttccat ttagcagagc ttggcttacc ttgggaattt ttccacgccg
     6421 aaggcttaga attttacggt gaaatttctt acctcaaagc aggtttgtat tttgctgatc
     6481 gcattactac cgttagcccg acctatgctc gtgaaattac tgaggaaatt gccggtgcag
     6541 gcttgcatgg tttactggca acccgtcaat atcaaggtag attgcgtggc attttaaacg
     6601 gggtcgatgc tgaggtgtgg aatccggaaa cggatacaca tattgtggtg aattatcgtg
     6661 cgaactatat gcacggtaaa gccaaaaata aagcggaact ccaacgaatt tttggtttgc
     6721 cagaagacaa agaagcatta ttgatggtaa tggtgactcg tttaactgag cagaaggggg
     6781 cagatttctt actcgccaat atagatacct taatgcaaca taaggtacag attattgtat
     6841 tgggaagtgg atcgccagat ttagaaaatg cgctacgtta tttccaacac aaatacccga
     6901 accaaattgg ggtgaaaatc ggttatgacg aggctttatc gcaccaaatt attgcaggtg
     6961 gtgatctgat tctagtacca agccgttttg agccgtgcgg attaactcaa ctttatgggc
     7021 tgaaatatgg cactttaccg ctggttcgcc gtaccggtgg cttagctgat acggtggtag
     7081 atagccataa agagagcatt gaaaaccgca gtgccaccgg atttgtattt gattacccag
     7141 atgcacctgc gtttttagag gcagctatgc gggcaatcag cttatggcag aaacaaaaat
     7201 tgtggtcgag cgttcgccag aatgcccttg ctcaagattt tggttgggca aaagtggcag
     7261 aacagtacca aaatttatac cacgaaatta tttaatttgt attcacaaca tcatttcaag
     7321 cggtcgaatt tgcggatttt tttgtaaaaa cgaccgcttg caatattaaa aattaggaga
     7381 atttactcaa tgagcaggca gtcattaagc ccagaaatga tcaaaaatgt taaaaatgcg
     7441 attttgcaca aaatggtgtt cgctttaggg gtcgaacccc gtgatgccag taagcgtaac
     7501 tggctcaatg caaccttacg tgtagtgcgt gatttatcta ccgaagattg gttacaaacc
     7561 cgccgtagcc aggttgcaaa tggtagccgc cgtgtttatt acctttcaat ggaattttta
     7621 atggggcgta cgttcagtaa cgcaatgatt tctgaaggtg tgtatgagct tattggcgct
     7681 gcgttaaaag agttagggca agatctggaa gagattatca atgaagaggg cgtccgggct
     7741 taggtaacgg tggcttaggg cgtttagccg cctgctatat ggacagcctt gccacaatga
     7801 aaattccggc aatcggctac ggtattcaat atgaatacgg tatgttccgc caagaaatcc
     7861 gcaacgggga gcaaattgag caacctgatg aatggttaga gaatgaattt gtgtggccat
     7921 atctacgttc aagtaagcgt ttcccggtac gctttggcgg taaaacttgg cgtgagggca
     7981 aaaaagtagt atggcagccg gaagaagaaa ttaccgctca agctcacgac caactgatcc
     8041 cgggctttga gaccacctca actaacagct tacgtttatg gtctgcacac gcatcgggta
     8101 gagggtttgg cttatctgat tttaaccgtg gcgattattt tgcagcaatg gttaaacaaa
     8161 acagctcgga aaacgtctct cgtgtgcttt atccggacga ttctacctat aacggtcgtg
     8221 aattacgctt acgccaagag tatttccttt gctcggcatc tgtacaagat attatccgcc
     8281 gccacgaagc ggagttcggc tcttgtgtga atttagccga caaagtggca actcacttaa
     8341 atgacacaca cccaaccctt gcggtgcctg agttaatgcg tattttaatt gacgaaaaag
     8401 gctatggctg ggaacaagcg tgggcgatga ctcgtaaaat tttcttctac accaatcaca
     8461 ctttgatgag tgaagcgtta gaaacttggc cggtagaaat gttagcccgt gtgctaccac
     8521 gccatttaga gattattttc gacattaacg aatatttctt agaggaagtg cgtagccaat
     8581 tcccggaaga tcacgatttg atttctcgtg tttccttaat tgatgaacaa ggcgatcgcc
     8641 gtgtgcgtat ggcgtggctt gcggtagtcg cctcagcgaa agtaaatggt gtggcgaaaa
     8701 ttcactcgga tttaatggtt gaatctattt ttgccgattt tgcccgtatt tacccaaatc
     8761 gttttactaa tgtgactaat ggggtgacac ctcgccgctg gatcaaaatt gccaacccag
     8821 ggcttgctaa tattttagat aaatgtatcg gcaataagtg gctgactgat ttaagtgaat
     8881 tggaaaaatt caacgtgttt gttgatgatg ctgatgtgca agcacaggtg gcagcggtga
     8941 aagtagaaaa caaacgtcgc ttagccaaat atgtcgaaga aactcaggga attaaactta
     9001 atcctgaagc gatttttgat gtacaagtta agcgtattca caagtataaa cgccagcaaa
     9061 tgaacgtgtt gcatatcatc acgctttata accgcatctt gaaaaacccg actgctgatt
     9121 ggacacctcg tgtgtttatc ttcgcaggga aagcggcaag tgcttattat gcggcgaaaa
     9181 aagtgattcg tttgattaat gatgtggcaa atgtggtgaa taatgaccct cgcattaatg
     9241 atttaattaa ggtggtgttt attccgaact acggtgtttc attagcacaa atgattattc
     9301 cggcagctga tgtttcagag caaatttcct tagcgggtac agaggcctcc ggaacctcta
     9361 atatgaaatt tgccctcaat ggtgctttaa ccattggtac attagacggt gcgaatgtcg
     9421 aaattttaga tcacgttggt aaagagaaca tctttatttt cggtaatgaa gtagagcagg
     9481 tggaagagct tcgccacaac ggttactcac cgtatcacta ctacgaaaaa gacagcgaat
     9541 tgaatgaggc aatttcacaa attctaaacg gtaaattctc accggaagat ccgtatcgct
     9601 atcaagattt gatcttaaat tcaggtgact actaccaagc ctgtgccgat tatcgtagct
     9661 atgtggaggc tcaagaaaaa gtggctcaag cctatcgtaa caagaaagct tggacacgtt
     9721 cagccatcat caatattgcc aatatgggct atttctcctc agaccgctcg gtgatggatt
     9781 atgcgaaaaa tatttggcat atcgaaccga tgagcgaaga acaattaaaa ggcgattcta
     9841 caatgggcag tattattgaa agttcaaata aactgttgaa tttaaaataa tgatttagag
     9901 aaaacggtaa gagtaatctt accgtttttg ttttagtcag ggattttgca aatttctact
     9961 aaaaattaac cgcttgtcaa tttgccttct ccaccgccgt gagcattccc ctcagtaaat
    10021 tcagctcatt agtttccagt tcggcacgtt ggtataaacg gcggagtttt agcatcactg
    10081 aatcattgcg gataaagcct aattcggtat ataagcgttc ggtgtgagca aagaaatgct
    10141 ctaaggcttg agcggttggg taatccttat ctgctgcaag cggttgtttt tcgccagaat
    10201 tttgcaaata agccattcgg atttcataac ttgcgagctg tactgccatt gccaaattca
    10261 gagaaccata atcaggattg gttgggaaat tcaaatggta ctggcatttc aataattctt
    10321 cgttggttag ccccactcgc tcacgtccaa atacaatcgc cactttgcca agattggttc
    10381 gatttaccac taattcacca cagtctcttg gttcaatcag ggtattttgc aaatggcgaa
    10441 gtctggcact ggtgccgatc accagttggc aatcggcaat ggcttcatcg aaagtggcgt
    10501 agcattgagc gttatccaac acatcttttg ccccagcagc aagggcttcg gcttgttcat
    10561 caagcggttg ttttggggcg actaatcgca aatgggttaa gcccatcgtt ttcattgctc
    10621 gggctgcgga accgatattt gccgggagtg aagtttcaac aagaatgatc tgaatttggt
    10681 tgagaatctg cattggtttt gtttcttttt tgttaaattt agcctgttaa tagtgtagca
    10741 aaaatttagc ctgcttaaaa tttgaaaaaa tgggaaataa tcggtttaat tgggcataat
    10801 tttttaccta tttgttttat ttagtggtac atttagagcg tttttaatca caacaaccat
    10861 acaggagtct ttatgcttat tggtgtacca agagagctgt tagacggtga aactcgagtg
    10921 gcggcaacgc caaaaaccgt tgagcagatc aaaaaacttg gctttgacgt acttgtggaa
    10981 caagacgcag gttttaaagc cagttttgaa gataatacat ttttaaatgc aggtgcaaat
    11041 atcggcacac aacaagaagt ttggaatgca gacattattt ttaaagtgaa tgcgccgaca
    11101 gaagctgaaa ttgagttaat caaagaaggg gtaaccttag tcagctttat ttggccggca
    11161 caaaatccac aattgatgga aaaattgcag tctaagaaaa ttaatgtgtt ggcaatggac
    11221 gctgtgcctc gtatttcccg tgcccaagct ctcgatgctt taagttcgat ggcaaatatt
    11281 tcgggttacc gtgcggtgat cgaagcggca aacgcttttg gtagcttctt tactgggcaa
    11341 attaccgcag caggtaaagt accaccggca aaagtgttgg taattggagc cggtgttgct
    11401 ggcttggctg caatcggggc ggcaaatagc ctgggggcga ttgtgcgtgc ctttgactct
    11461 cgtcctgaag taaaagagca agttaaatca atgggggctg atttcctcga aattgatttt
    11521 gaagaagaag gtggctcagg tgacggctat gcgaaagtga tgtcggaaga gtttaaccgt
    11581 cgtgcaatgg cgttatatgc cgagcaagcc aaagaggtgg atattattat taccaccgct
    11641 gccattccgg gcaaacctgc tcctcgttta atcactaaag agatggttga ttcaatgaaa
    11701 ccgggttcag tgattgttga tttagccgct gcaaccggtg gtaactgtga atacaccaaa
    11761 gccggcgaga ttgtggtgac cgataatcaa gtgaaagtga ttggctatac cgattttcct
    11821 gcacgtttac caacgcaatc ttcgcaactt tatggtacta acttggtgaa tttactcaaa
    11881 ctgttagcac caaataaaga tggtcaaatt gagattaatt ttgatgatgt agtgttgcgt
    11941 ggcgtaacgg tggtgcgtga cggcgaatta acttggccgg ctccgccgat tcaagtatct
    12001 gcccaactgc aaaaacaagc agccgcacca caagcggtca aaaaagagga aaaacctgca
    12061 gaccctcgag tgaaatatgg cgtgatggca gcagcaggtg tgctgttcct atggcttgca
    12121 tctgtggctc cggcagcgtt tttatcgcat tttaccgtat tcgttctcgc ttgtgtggta
    12181 gggtattatg tggtttggaa cgtcagccac gcactacata ccccattaat ggcggtaaca
    12241 aatgcgattt cagggattat catcgtaggt gcggtattac aaattgccca accgaccggt
    12301 aatttcttta ttgatatttt ggcatttatt gcgattttgg ttgccagcat caatattttt
    12361 ggtggcttta aagtaacgca acgtatgctt gcaatgttta gaaaaggtta aggagaaacg
    12421 aaactatgtc ttttggattt gtgactgctg cgtacattat tgcagctatt ctctttatta
    12481 tgagcttagc cggtctttct aaacacgaaa ccgccaaagc aggttgttgg tatgggattg
    12541 tgggtatggc gattgcttta gtggcaacca ttttcggccc gcaatcacat ggcacgattt
    12601 ggatcttaat cgcaatggca atcggtggat tcatcggggt gaaaaaagcc ctaaaagtag
    12661 aaatgaccga aatgcctgaa ttagtggcaa ttctacacag ctttgtcggt ttagcagcgg
    12721 tattggttgg ttttaacagc tacggacttc ataccaatgc attaatgcct gcaaatttag
    12781 atgaaactgc acaagcggca tttttagcgg aacaagccac tcttgccaat atccacaatg
    12841 tggaagtgtt cttaggtatt ttcattggtg cggtaacctt ctccggttca ttggttgcct
    12901 ttggtaaact aagcggtaaa ttatttggtc gtaaagtctc ttctgcagca ctgaatattc
    12961 cacataaaca caaatggaat ttggcagcca ttatcgtttc tgtttttttg atgatcgtgt
    13021 ttttaaataa tccgcacaat atcttccctg tgctgattat gacaattatt gcgttagtct
    13081 tcggctggca cttagtttct tctattggtg gggcggatat gccggtggta gtttcaatgc
    13141 tgaattctta ttcaggttgg gcagccgcag cggcaggctt tatgctaagc aacgatttat
    13201 taatcgtaac cggtgcatta gtgggatcat caggtgctat cctttcttat attatgtgta
    13261 aagcaatgaa ccgctcattc attagcgtga ttgccggtgg ttttggcaat gaagttcagt
    13321 ctggcaaagg tgatgaagaa tacggtgaac accgtgaaac gaaagccgaa gaagtggcag
    13381 aaatgctgaa aaatgcaagc tctgtgatca tcacgccggg ttatggtatg gcagtggctc
    13441 aagcacaata tccggtagcg gaaatcaccg caaaattgcg tgaaaaaggc gtgaatgtgc
    13501 gttttggtat tcaccctgtg gcagggcgtt taccggggca tatgaacgta ttattggcgg
    13561 aagcgaaagt accttatgat gtagtgctgg agatggacga aatcaatgac gattttgaag
    13621 aaaccgatgt ggtattggta atcggtgcaa acgataccgt aaaccctgct gcattagacg
    13681 acccatcaag ccctattgct ggaatgccgg tgcttgaagt atggaaagca caaaatgtta
    13741 tcgtgttcaa acgttcaatg gcagtaggct acgccggtgt gcaaaaccca ctgttcttta
    13801 aagaaaatac ccaaatgcta tttggtgatg caaaagaacg tgttgatgat attttacggg
    13861 cgttaaatta aatttaaata aaaaagcgaa cataagttcg cttttttgtg cttaggctaa
    13921 cataaattgt taatttttta ctctaatacc atcaatccgg gaagagtcgc aaaactctgc
    13981 gattttacgg tatcatggaa atcatctaag taggctaggg tagcatcggc ttctcgaata
    14041 gcgccataaa gggtgctata tagtccttgc tgagttattt ttcttgccac cacatacccc
    14101 ctatctaaat atggtttaac cgcccaataa ggtagtgcag caatgcctcg ccgacttgct
    14161 actagctgaa taatagcaat agttaactca ctattacgcc gagtaacttt gatgccagca
    14221 gggcctaata tttttcgcag taaatctagc atatcatcag gtactggata ggtaattaat
    14281 gtctcatctt taaaatcttc agcttcccat acatcttttg tggcaagagg gtgatcttta
    14341 gagcaaatag ctaccatttc atatgaaaag agaggtttgt atataatacc agcactatct
    14401 tcctcttcag cgacaattgc cagatctgca cgatggctta atagcaaacc aaccgtatca
    14461 gtatggaaac ccgatacgat atctaattca actagaggcc aatgttgacg gaaagtatcc
    14521 attgccggca ttagccaatc aaaacaggta tggcattcta ctgcaacacg tacctctccg
    14581 acttctcctt gtttcactcg ggctaaatct aattcagcct caatgacttt gggcaaaata
    14641 tcgtaggcca acttaattaa acgttcgcca gctggtgtaa agcgaatagg ggagcttttt
    14701 cgctcaaata gcgtaagatc atactgttct tccagtaatt ttatttggtg tgaaagtgcg
    14761 gattgtgtta aatggacacg ctttgctgca agagatacgc taccgctctc ttttaatgcg
    14821 attaatgtcc gcaaatggcg gatttcaaga aaaatcggtt tcataattta ttcatctaaa
    14881 agtgaaaaaa gatgaaaata attataacaa acaagcggtc aaattctgca aaaaatttgc
    14941 aaaatccaac cgcttgtata gagcagtggc gaattattgg gttaattgaa ctaaaatgcg
    15001 gcgaacaggc tctgctgcac cccataataa ttggtcacct acggtaaatg cagctaagta
    15061 ttctccaccc atcgctaatt tacgcaagcg accaaccggc acgctcaatg taccggtcac
    15121 tttcgccggg gtcaattcac gcaatgtggt ttctttgtcg tttggaatta ctttcaccca
    15181 ttcattgtgg gcagcaataa tttgctcgat ttccgctaac ggaatatctt ttttcagctt
    15241 aattgtgaat gcttggctgt ggcagcgtaa tgctccaata cgcacgcata aaccatcaac
    15301 tggaattggg ttatcgctta aacctaaaat tttattagtt tctgcataac ctttccactc
    15361 ttctttagtt tgcccggttt ccggtaataa tttatcaatc caaggaatta agctaccgcc
    15421 caatgccgca ccgaagttct cggttgggaa gtcttccgca cgcattttag ccgtaacttt
    15481 acgttcaata tctaaaatag aagaggcagg atttgctaat tcagctttta cgctatcttc
    15541 taattcaccc atttgagaaa gcaattcacg catatttttc gcaccggcac cggaagcggc
    15601 ttggtaagtt gctacagaaa cccactcgac caaatctttc tcaaataaac caccgatagc
    15661 cattagcatt aggcttacgg tacagtttcc gcctacaaat gttttaatgc cgttttttaa
    15721 gccttctgaa atcacatgtt ggttcaccgg gtctaatacg ataatagcat cgtctttcat
    15781 acgtaatgca gaagccgcgt caatccaata gccgttccaa ccggtttctt ttaattttgg
    15841 atagacttca tttgtataat caccaccttg gcaagttacg ataatgtcta atttttttaa
    15901 ttcttcaatg tcaaaggcgt tttttaattc gccggcatct tttccgccaa aaacaggggc
    15961 tttttgaccc gcttgtgaag tagtgaaaaa aacagggttg atattggcga agttattttc
    16021 ttcaaccata cgatccatta agaccgaacc gaccatacca cgccaaccga taaaacctac
    16081 attttgcatt gtgtttgctc ctaaaaatga tgttataaag attgtgaata aatacaggat
    16141 tttagtgcaa aaatcaatgt tttttattga tttgcaaagt tttgacaaaa tttaac
//
LOCUS       DANLZD010000053        16117 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.053, whole genome shotgun sequence.
ACCESSION   DANLZD010000053 DANLZD010000000
VERSION     DANLZD010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16117
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.053"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..295
                     /locus_tag="PXE26_001214"
     CDS             <1..295
                     /locus_tag="PXE26_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593803.1"
                     /translation="SNVAYPNLDEWYSASDKERREFIAKHFAEETVRSDRNTPYDYAM
                     CTGRMFAKQLTRDEVKDYPLANTKPQYLTRDRRIEIMSNLPREILQNCAKYIQ"
     gene            complement(331..1083)
                     /locus_tag="PXE26_001215"
     CDS             complement(331..1083)
                     /locus_tag="PXE26_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HDL5593804.1"
                     /translation="MAYKPPFTVTTKMLNLVVEISHKLGTLQLDFERNLHLRKNNRLR
                     SIQASLAIEANSLTIEQVTAIIKGKKVLGHPKDIREVKNAYDAYDEMMHYNPYSIKDF
                     LKAHKFLTADLVNDAGAFRSKDVGIYNFSGQLVHMGARPQFVENLINELFSWAKQDDT
                     PALIKSSVMHYEIEMIHPFSDGNGRMGRLWQNVLLAQWNPLFAWLPIETMVYENQQRY
                     YQMLSLADSQNDSTGFIEFMLEMILETLLKLK"
     gene            complement(1122..2369)
                     /gene="clpX"
                     /locus_tag="PXE26_001216"
     CDS             complement(1122..2369)
                     /gene="clpX"
                     /locus_tag="PXE26_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HDL5593805.1"
                     /translation="MAFEKEPHCSFCGKKRTEVDQLVEGTEGYICNECIEESYALLHG
                     EEEPLIDENQDDEGSFFTNVPTPHELHAHLDDYVIGQEHAKKVLSVAVYNHYKRLRSA
                     LSNHQATNGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGE
                     DVENVIQKLLMKCDFEAEQAERGIVFIDEIDKITRKSESASITRDVSGEGVQQALLKL
                     LEGTVANINPQGGRKHPKGETIPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFAA
                     ALKKDKDRQDLTELFKQVEPEDLVKFGLIPELIGRLPVVTPLQELDEEALIQILTEPK
                     NAIIKQYQALFEMEGVELHFTKDALISIAQKAISRKTGARGLRSIVENLLLDTMYDLP
                     TLNAKKVTIGKGCVENGDKPKVE"
     gene            complement(2369..2962)
                     /gene="clpP"
                     /locus_tag="PXE26_001217"
     CDS             complement(2369..2962)
                     /gene="clpP"
                     /locus_tag="PXE26_001217"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HDL5593806.1"
                     /translation="MALVPMVVEQTSKGERSYDIYSRLLKERIIFLNGQVEDNMANLI
                     VAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQAASMGAF
                     LLSAGAKGKRFALPHARIMIHQPLGGARGQATDIQIQAEEILRLKATLTRRMAEHSGQ
                     SYEKVLADTERDNFMSAEEAAEYGLIDKVLTSRSEVA"
     gene            3074..3457
                     /locus_tag="PXE26_001218"
     CDS             3074..3457
                     /locus_tag="PXE26_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HDL5593807.1"
                     /translation="MTLTEIYQKFERCKSWEERYRLLIQLSRLLPKPSEQELAQIAEI
                     EGCESRLWFEFQAEPRKVVAYSDARLMQGILFIVSVALTEKTAEELKGFDLKTMFDEL
                     KISQNLTSTRLNGLGQLQKHIMMNL"
     gene            complement(3561..3637)
                     /locus_tag="PXE26_001219"
     tRNA            complement(3561..3637)
                     /locus_tag="PXE26_001219"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3601..3603),aa:Asp,seq:gtc)
     gene            complement(3726..4481)
                     /locus_tag="PXE26_001220"
     CDS             complement(3726..4481)
                     /locus_tag="PXE26_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5593808.1"
                     /translation="MKKSIYDTPIFFERYQQLRQNPISMNEVVEKPTMFSLLPDLTGK
                     KVLDLGCGTGVHLAHYLTLGAEKVVGLDLSELMLQQAESDLSAHWQKGNDFSLYCLPM
                     ERLNEISEGDFDVVTSSFAFHYIADFSELLAKISQKMTACGTLIFSQEHPIVTCYREG
                     YRWEKNQEKQQVAYRLNYYREEGERDRSWFQQPFKTYHRTMATIVNNLIQGGFEIVQM
                     EEPMLAGQPRWHNEFKDLQHRPPLLFIKAIKQK"
     gene            complement(4541..5536)
                     /gene="trpD"
                     /locus_tag="PXE26_001221"
     CDS             complement(4541..5536)
                     /gene="trpD"
                     /locus_tag="PXE26_001221"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HDL5593809.1"
                     /translation="MQALLDKLFANQALAQAESHRFFSEVIKGNVSNEQLAAALIALK
                     LRGETVDEIAGAAKAALENANPFSTPDYPFADIVGTGGDGHNTINISTTSAIVAATMG
                     YKIAKHGNRSVSSKTGSSDVLSHLGINVDVSPETARLALDETNICFLFAPTYHSGFKY
                     AAPVRQALKTRTIFNILGPLVNPAHAKRQLLGVYSPELVKVYAETVKALGYEHTIVVY
                     GAGLDEVAVHGETQVAEIQNGQIDYYTLTPEDFGIERHSLEDLKGGEPAENAEKVTAI
                     LQGKGKLAHIDAVAANVALLMKTFGEDDLKANVQKVKETLESGKALETLRKLSTY"
     gene            complement(5554..5940)
                     /locus_tag="PXE26_001222"
     CDS             complement(5554..5940)
                     /locus_tag="PXE26_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005543439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tautomerase family protein"
                     /protein_id="HDL5593810.1"
                     /translation="MISVYGLKQTLADRRALIADVIFDCMQMSLGVPKQRHALRFDLL
                     DAENFYPPINRSQDFIVIEINLMQGRSEQLKKRLIKGLFSALHTKVGIVPMDVEITIK
                     EQPEHCWGFRGMTGNEATDLEYQAHR"
     gene            complement(5933..6523)
                     /locus_tag="PXE26_001223"
     CDS             complement(5933..6523)
                     /locus_tag="PXE26_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HDL5593811.1"
                     /translation="MANILFIDNFDSFTYNLVDQFRELGHQVTIFRNDYPLEDFLAKA
                     ETTENCLVALSPGPGNPAEAGNLLEIIRRLKDKVPMIGICLGHQALIEAFGGKVVHTG
                     TVLHGKVSRIEHDNQAMFSGINNPMLVARYHSLMGDELPAEFIVNAKFEHIVMAIRHK
                     TLPICGFQFHPESILTVQGTKLLKQSVEWLLGEKND"
     gene            complement(6533..8089)
                     /gene="trpE"
                     /locus_tag="PXE26_001224"
     CDS             complement(6533..8089)
                     /gene="trpE"
                     /locus_tag="PXE26_001224"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HDL5593812.1"
                     /translation="MPQLTITQTELPYFADTTRVYYALCGERPHTLLLDSAEIQSKNS
                     VKSLLFAKSAVHIFCEDQTVTFHALTPNGEAVLPLIANALSLLNPAPTCKFLDKNDRL
                     QAIFPTISNQLDEDSKLKTTTVFDGLRTVSQLFADSTSPIYLGGLFSYDLVANFIPME
                     NISLQDDGLSCPDYTFYLAEQLVTIDHQTETAVLNTFCFEPNEQTNLNQQAVEFTQKL
                     ANLSHIELPLANQTATSEATANIEDEDFKAIIRKLKHHINIGDVFQIVPSRRFSLPCP
                     NTLASYKQLKINNPSPYMFYMQGENFTLFGASPESALKYSQANRQLEIYPIAGSRPRG
                     FDEQGNIDPELDSRLELELRLDQKELAEHLMLVDLARNDVARVSESGTRRVVDLMQID
                     RYSQIMHLVSRVIGTLRKDLDALHAYQACMNMGTLTGAPKIKAMQLIYQVEQQKRHSY
                     GGAVGYLTSDGNLDTCIVIRSAFVQNGIAYVQAGCGEVLDSDPQLEADETRHKARAVL
                     KAIGQVNAKA"
     gene            8231..8848
                     /locus_tag="PXE26_001225"
     CDS             8231..8848
                     /locus_tag="PXE26_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HDL5593813.1"
                     /translation="MTQFFYIHPDNPQQRLINQAVEIIRNGGVIVYPTDSGYALGCAM
                     GDKHAMDRIVAIRKLPENHNFTLVCSDLSELSIYALVNNQAYRLIKNNTPNPYTFILP
                     ATKELPRRLMTKRKTVGIRVPDNAIALALISALGEPILSCSLMLPETEMTESDPDEIR
                     DHLQNRVDLIIHGGYLGQQPTTVVDLTDDVPVIIREGSGDPTSFN"
     gene            8994..10061
                     /gene="rluB"
                     /locus_tag="PXE26_001226"
     CDS             8994..10061
                     /gene="rluB"
                     /locus_tag="PXE26_001226"
                     /EC_number="5.4.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2605) synthase RluB"
                     /protein_id="HDL5593814.1"
                     /translation="MTTFQKKSTATFRADKRGESRPSFKKEEQKSERKFGKTSEKPPR
                     PTSKPLTQRIAKKVEKTTASEVASQEKKAKVVGEKLQKILARAGQGSRRELEEIIAAG
                     RVSVDGKMATLGDRVQVSSSTKIRIDGHLVNLMPAQKEICRVLMYYKPEGELCTRSDP
                     EGRSTVFDRLPRLSGARWIAVGRLDINTSGLLLFTTDGELANRLMHPSREVEREYSVR
                     VFGNIDDAMLQRLRKGVQLEDGPANFKQIKVVGGTGLNQWFDVTLTEGRNREVRRLWE
                     SQGVEVSRLIRIRYGNIKLDKGLPRGGWEEMGLEQVNYLRELVGLPPETETKVEVGVN
                     RRRTNIRQIRKAVKQHQKYRG"
     gene            10127..11899
                     /locus_tag="PXE26_001227"
     CDS             10127..11899
                     /locus_tag="PXE26_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDL5593815.1"
                     /translation="MSWDIVATLAVTGIAVFLFATEKMRMDVVAILVLCSLVLLGQVD
                     TKSALSGFSNSATVTVTAMFVLAAGLQNSGALDSVGSLLAKVKSPWLFLLVLCGVNAA
                     VSPFVNNTAVVAVLIPIVIAAAQNIKMAPSKALIPLSFSSQMAGVCTLIGTSTNLLVN
                     AIAQKQGHSGFGMFEFAPLGIIFLVVGVAYLLVTSRFLLPESHLQLEDGEGFGKYVSE
                     LKVNKDSVLIGKSTFESGLNEEFNLFTIGVLRDGERLSTPSHQVLQKHDILLLRGESE
                     NLAKVREKYGLHHVVYGRRENDEDNLDEDLMVAEVMISPISRWIGGTIPILQQRWNKN
                     ATVLGIQRQSKVIRERLRTTAFKMGDILLLTLPKEDMETLRQDKDFIVLSSDLVKTEE
                     SWKSKFALGVMVLVVATAALGWVPISVSALIGAVAMCVAGCLTAEEAYQSIDWKIILV
                     LAGLLPLGEAMANSGAAQFIVDNTLGKVGEFGPLVVLAVLYLLTMVLTEFMSNAGTAV
                     LLTPIAVSTAKMLGVDASPFIIAVMFAAATSFMTPVGYQTNTMVYGAGGYKFTDFIKI
                     GLPLNVIYWILGIVLIPIFFPFNP"
     gene            complement(11989..>16117)
                     /locus_tag="PXE26_001228"
     CDS             complement(11989..>16117)
                     /locus_tag="PXE26_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL5593816.1"
                     /translation="WNHAKRTWIVASELSRSANKSNATNTSLTTNIIKLSTLSLALSA
                     GFASAATYSPTYGTIPDNNPQTSIAIGDGSKVNSTLVSTITGLEGNSGKVSTALGYNT
                     TATADFSTALGGFANASFASTAVGGQATADKRSVAVGYNATAMGLREVFIGDHAGLNH
                     SNSTEYNIGIGYSASSNVTGNNTISIGNTAGDGTSGSHNIAIGTYANAKLAGPTTNVT
                     SDDNIAIGNSALANGVNNYKTTAATGETVIGKATAVGSHANATGIVSSAYGAEANATA
                     IHSTAIGAKSQANGDNSTAIGYEAKTSGHGATSLGYYANATANLTTAVGTNAGATSDY
                     ASAFGREANASGGSATALGNRATASGAASVALGVSAKATNQRTIAIGESSNASAFNAT
                     AIGRNATAEHTDSIALGSNSVTAIAIPTTNATVNGITYSDFAGTNPIATVSIGAEGKE
                     RTITNVAAGRISLSSTDTINGSQLYLTQQAIGNVAATTANILGGGAAVTENGNITFPT
                     YALVNGTPDADKEGKQGRYTTVSAALSALNTAVISPLTFAGDTGTNFERHLGSTVKIK
                     GGSTGILTENNIGVVADGNSTLTIKLAEKVNLGANGSLTTGDTVVNNTGITIANGVAD
                     KPVSLTKSGLDNGGNKIANVAAGDVDTDAVNVSQLKQAISKFATHYVSISDDGIQRAN
                     YDNSGSSGVNPMAIGVATSANGELATALGSEAEANGERTTAVGPRATADGMNATSIGY
                     NANANATNALAVGSAANANADTSTAIGTASTATATRATALGSKSEATGENSTAVGYEA
                     SSIGADSLAAGYNANASGTQSTALGNSANAGGIWSTSVGRNANAAGSSAIALGNSANA
                     AGVASIALGVSSQATTTAAVALGQNAKATHQGSVALGTNSETVATVATKSATLNGNTY
                     TFAGTTPSSTVSIGSVGNERTLTNVAAGRILDSSTDAINGSQLYAAYTEIDGLNTKVN
                     ELSNGALTFVDDAGTEIVRKLGTSLNVKGGADATILTDNNIGVVATDANTLTVKLAKD
                     IDLTPAGSVAVGNSKLNNNGLTINNGPSVTMTGVDAGKLKITNVADGDISPISADAVN
                     GSQLYDTANTIATALGGNSSVNANGAVSAPSYTVVDGAPTNEVSKTVNNVGSAITALN
                     DAVTSPLTFAGDTGTPSQRKLGSTVTVKGGVSNESQLTDNNIGVISNGNGSLTVKLAK
                     DIKVNSVTAQTVTANIAVADTVKTGDTTIDTNGLTIVGGPSITKTGINAAGTKVTNVK
                     AGTEDTDAVNFSQLKATEKNINNKINNIDSKVNKVDKRLRAGIAGATATAGLPQAYLP
                     GKSMLATAGDTYRNEAAIAVGYSRISDNGKVIYKLTGNSNTRGDFGGSIGMGYQW"
BASE COUNT         4430 a         3287 c         3458 g         4942 t
ORIGIN      
        1 aagtaatgtt gcttatccta atttagatga gtggtactca gcttcagata aagagcgaag
       61 agaatttatc gcaaaacatt ttgcagaaga aacagtaaga agtgatagaa atacaccgta
      121 tgattatgct atgtgcactg gtagaatgtt tgctaaacaa ctgactcgag atgaagtcaa
      181 agactaccct ttggcaaaca ctaagccgca atatttaacc cgtgatagac ggattgagat
      241 tatgtctaat ttacctcgtg aaatattaca aaattgtgct aaatacatac agtaatttta
      301 tgagtaacac cactttggaa ttaagtggtg ttattttaat tttaataatg tctctaaaat
      361 catctccaac ataaactcaa taaagccggt agaatcattt tggctgtctg cgagagaaag
      421 catttgataa taacgttgtt gattttcgta aaccattgtt tcaatcggca accaagcgaa
      481 aagtgggttc cattgtgcta aaaggacatt ttgccataat cgacccattc tgccgtttcc
      541 atcactaaag gggtgaatca tttctatttc atagtgcata accgagcttt taatgagtgc
      601 aggtgtatca tcttgtttag cccaagagaa caactcatta atcaaattct ctacgaattg
      661 aggacgagcc cccatatgca caagttgccc actgaaatta taaatgccga catcttttga
      721 acgaaaagcc cctgcgtcat ttactaagtc agcagtaaga aacttatgtg ctttgagaaa
      781 atctttaatc gagtaaggat tatagtgcat catttcatcg taagcgtcat aggcattttt
      841 gacttcacga atatctttgg ggtgtccgag aacctttttg cccttaatga ttgcggtaac
      901 ttgctcaatc gttaatgaat ttgcctcaat agctaaagag gcttgaattg atctcaagcg
      961 gttatttttt ctaagatgta aattacgctc aaaatccaat tgtagcgttc ccaatttatg
     1021 agaaatttct acaaccagat tcagcatttt agtggtaact gtaaaaggtg gtttataagc
     1081 cattttgcaa taatcctaaa aaattaaacc gcttgtcatt gttactccac cttcggctta
     1141 tcgccgtttt caacacagcc tttgccgatg gtgacttttt tcgcattgag ggttgggaga
     1201 tcgtacattg tgtcaagtaa taagttctcg acaatagaac gtaacccacg agccccggtt
     1261 ttgcggctaa tcgctttttg ggcaattgaa attaatgcat ctttggtgaa gtgcaattca
     1321 acgccttcca tttcgaataa ggcttgatat tgcttgatga tcgcattttt cggctcggtt
     1381 aagatttgaa tcagagcttc ttcgtccaat tcttgcagcg gagtcaccac cggtaaacgc
     1441 ccgattaatt caggaattaa gccgaatttg actaaatctt ccggttcaac ttgtttgaat
     1501 agctcggtta aatcttggcg atctttatct tttttcaatg ccgctgcaaa accgatacca
     1561 ccttgagtgt tggtacgggc ttccacgatt ttatctaaac cggcaaaagc accgccgcaa
     1621 ataaagagaa ttttggaggt gtccaccgga atggtttcgc ctttcgggtg tttgcgaccg
     1681 ccttgtgggt taatgttcgc caccgtgcct tcaagtagtt ttaataaggc ttgttgaaca
     1741 ccttcgcccg atacatcacg ggtaatggat gcactttccg atttacgggt gattttgtcg
     1801 atttcatcaa taaaaacaat gcctcgttcc gcttgttcgg cttcaaaatc gcatttcatt
     1861 aataattttt gaatcacgtt ttcgacatct tctcccacat agcctgcttg ggtaagggta
     1921 gtagcatcag ctaccgcaaa aggtacgttt aaacggcggg caagggtttc tgccaacaag
     1981 gttttaccgc taccggtcgg cccgattaat aaaatattac ttttacctaa ctctacgcca
     2041 ttagtggctt gatggtttga caatgcactt cttaagcgtt tgtagtggtt ataaacggcc
     2101 accgaaagca cttttttcgc gtgttcttga ccgatgacat aatcatctaa atgagcgtgt
     2161 aattcgtgag gtgtcggcac attggtgaaa aaactgcctt catcgtcttg gttttcatca
     2221 attaacggct cttcttcacc gtgtaataag gcgtaggatt cctcgataca ttcattacaa
     2281 atatagcctt ccgtgccttc gactaattga tcgacttcgg tacgtttttt accgcaaaaa
     2341 ctacagtggg gttctttttc aaatgccatt acgccacctc actgcgagaa gttaatactt
     2401 tgtcgattaa gccatactca gcggcttctt ccgcagacat aaaattatca cgctcggtat
     2461 cggctaacac tttttcatag ctctgaccgc tgtgttctgc catacggcgg gtaagggtag
     2521 ctttcaagcg taaaatttct tccgcttgaa tttgaatatc ggttgcttga cctctcgctc
     2581 cacctaaagg ttggtgaatc ataatacgag cgtgcggcag agcaaagcgt ttaccttttg
     2641 ccccggctga aagcaaaaat gcccccattg aagccgcttg ccctgtgcaa agggttgcta
     2701 catcgggttt gatgaagttc attgtatcgt aaattgccaa gcctgctgtt accacgccac
     2761 ccggtgagtt aatgtataaa tagatgtctt tttccggatc ttcggcttct aaaaacagaa
     2821 gttgtgccac aatcaggttt gccatattgt cttccacctg accgtttaaa aaaataatac
     2881 gttcttttaa taaacgtgaa taaatgtcgt aagaacgttc gccttttgag gtctgttcca
     2941 ccaccattgg gactaatgcc attttgtttt cctctgtcgt aatacaaaat ctcgctattc
     3001 tagcaaattt tcagaaaatc attaacaaca agcggtcaga ttgttaaaat cttttgcaaa
     3061 tgatgaggaa attatgacat taacagaaat ttaccaaaaa tttgaacgtt gtaaatcgtg
     3121 ggaagaaaga taccgcttgt taattcagct aagtcgcttg ttaccaaaac caagtgagca
     3181 agagttggca caaatagcgg aaattgaggg ctgtgaaagc cgtttatggt ttgaatttca
     3241 agctgagcca cgaaaagtag tggcatatag cgatgcccgt ttaatgcagg ggattttatt
     3301 tattgtgagt gtagctttaa ctgaaaaaac ggcagaagag ctgaaaggct ttgacttaaa
     3361 aacgatgttt gatgagctaa aaatttcaca aaatttaacc agcacaaggt taaatgggtt
     3421 gggtcagtta cagaaacata taatgatgaa tttgtaattc accctcgccc cttgtgggag
     3481 agggtgaata aaatccgcag gattttattc gggagagggg aatataaaaa acctctgatt
     3541 tctcagaggc ttaaatttgt tggcggaacg gacgggactc gaacccgcga ccccctgcgt
     3601 gacaggcagg tattctaacc agctgaacta ccgctccata ctggtgctaa aataatagtg
     3661 gtttcctcaa cattgagcaa atagtttttg caaaatagtg tttaattggt tgtaaaataa
     3721 ccactttatt tctgcttgat cgccttgata aacagcaacg gcggacggtg ctgtaaatct
     3781 ttaaattcat tgtgccaccg aggttggcct gccagcattg gttcttccat ttgcacaatc
     3841 tcaaacccgc cttgaataag gttattcaca atggttgcca ttgtgcggtg gtaggtttta
     3901 aagggttgtt gaaaccaact tctgtcccgt tcgccctctt cccgataata gttcaagcgg
     3961 taagcaactt gttgtttttc ttggtttttc tcccaacgat agccttctcg gtaacaggtg
     4021 acaatcgggt gttcttgcga gaaaatcagc gtgccacaag cagtcatttt ttgcgaaatt
     4081 tttgcaagta gttcggaaaa atcagcaata taatgaaacg caaaagagct ggttactaca
     4141 tcgaaatcgc cctcgctgat ctcatttaat cgctccatcg gcaggcagta aagggaaaaa
     4201 tcgttgcctt tttgccaatg agcagaaaga tcgctttctg cctgttgtag cattaattca
     4261 gataaatcca accccaccac tttttctgca ccgagcgtta aataatgggc taaatgaact
     4321 cctgtgccac aacctaaatc cagcactttt ttgccggtta agtctggcag tagagagaac
     4381 attgttggct tttccaccac ttcattcata cttattggat tttgtcgaag ttgttggtaa
     4441 cgctcaaaga aaatcggagt gtcgtaaatg ctttttttca cttaatagcc tttaaacaaa
     4501 tataaaataa ggcgggttaa aacccgccac tacgatatga ttagtaagtc gataattttc
     4561 gcaaagtttc taacgctttt ccactctcaa gcgtttcttt tactttttgc acattggctt
     4621 ttaaatcatc ttctccaaag gttttcatta ataatgcgac atttgctgcc accgcatcaa
     4681 tatgagccag tttacctttt ccttgtaaaa tagcggttac tttttcggca ttttctgcag
     4741 gttcaccgcc tttgagatct tctaacgaat ggcgttcaat gccgaaatct tccggcgtta
     4801 aggtgtaata gtcgatctgt ccgttttgaa tttccgcaac ctgcgtttcg ccgtgaacgg
     4861 caacttcatc taaacctgca ccgtatacca caatagtgtg ttcgtaacct aaggctttta
     4921 cggtttcagc atagactttc actaactcag gggagtacac accgagtaat tggcgtttag
     4981 cgtgagccgg gtttaccaac ggccctaaaa tattgaaaat cgtgcgggtt tttaaggctt
     5041 ggcgaacagg ggcggcatat ttgaatccgc tgtggtaggt tggggcaaac aaaaagcaga
     5101 tgttggtttc atctaaagca aggcgtgccg tttcaggtga aacgtcaaca ttaataccta
     5161 aatggcttaa tacatcgctt gagccggttt tacttgatac gctacggttg ccgtgtttgg
     5221 caattttata gcccattgtg gcggcaacaa tcgcacttgt ggtagaaatg ttgatggtat
     5281 tatgcccatc gccacctgtg ccgacaatat ccgcaaaagg gtaatcaggc gttgagaacg
     5341 gattggcatt ttcaagtgcg gcttttgcag cacctgcaat ttcatcaacg gtttcgccac
     5401 gcagttttag agcgattaag gcagcagcaa gttgttcatt tgatacattg cctttaataa
     5461 cttcactaaa aaaacggtga gattccgctt gggctaaggc ttggttggcg aataatttat
     5521 ctaaaagtgc ttgcatagtc tcttcctttt taattagcga tgtgcctgat attccaaatc
     5581 ggttgcctcg ttgccggtca ttccacgaaa gccccagcaa tgctctggct gttctttaat
     5641 ggtgatttca acgtccattg gcacaatgcc gactttggtg tgtaaggcac taaatagtcc
     5701 tttaattaag cgttttttga gctgttcgct ccgcccttgc atcaggttta tttcaatcac
     5761 aataaaatct tggctacggt taattggggg atagaaattt tccgcatcca ataagtcaaa
     5821 acgcaaagcg tggcgttgtt ttggtacgcc aaggctcatt tgcatacagt caaaaatcac
     5881 gtctgcaatc agggctctgc ggtctgctaa ggtttgtttt aatccatata cactaatcat
     5941 ttttttctcc taataaccat tccaccgact gcttaagtaa ttttgtgcct tgcacggtta
     6001 aaatggattc cgggtggaac tggaaaccgc aaatcggtaa ggttttgtgg cgaattgcca
     6061 tcacaatatg ttcaaatttc gcattaacga taaattctgc cggtaattca tcgcccatta
     6121 atgagtgata acgagcgaca agcattggat tgttaatgcc tgaaaacatc gcttggttat
     6181 cgtgttcaat acgagaaact ttgccgtgca atactgtgcc ggtatgcact actttgccgc
     6241 caaaggcctc aattagagct tgatgtccta aacaaatgcc aatcatcggt actttgtctt
     6301 tcagacggcg aataatttcc aataaattgc ctgcctcagc cggattaccc gggccggggg
     6361 aaagggcaac caaacaattt tcggtggttt cagctttggc taaaaaatcc tcaagcggat
     6421 aatcattgcg gaaaatcgtt acctgatgcc ctaattcacg aaattgatcg accaagttat
     6481 aggtaaaaga gtcgaaatta tcaataaaaa gaatatttgc catagtttgt ccttatgctt
     6541 ttgcattcac ctgcccaatc gcttttaaca ccgcgcgtgc tttatggcgt gtttcatctg
     6601 cctctaattg tggatcggaa tccagcacct caccacaacc agcttgcaca taggcaatgc
     6661 cattttgaac aaaggcggaa cggatcacga tacaggtatc taaattgccg tctgaggtta
     6721 aatagcccac cgcaccgccg tagctatggc gtttttgttg ctcgacttgg tagatcagtt
     6781 gcattgcctt aattttcgga gcaccagtta gcgttcccat attcatacaa gcttgataag
     6841 cgtgcagagc gtcaagatct tttctaagtg tgccgatcac acgagaaact aagtgcataa
     6901 tttgcgaata gcggtcaatt tgcattaaat caaccacacg gcgagtgccg gattcgctca
     6961 cacgagccac atcattgcgg gcaagatcga ctaacattaa atgttcggca agctcttttt
     7021 ggtctaaacg cagttctaat tccaaacggg aatctaattc aggatcgata ttaccttgtt
     7081 catcaaaacc gcgtgggcga gagccggcaa tcgggtaaat ttccaactgg cggttggctt
     7141 gcgaatattt caacgcactt tcaggcgacg ccccaaacag agtgaaattt tcgccctgca
     7201 tatagaacat atacgggctt ggattgttga ttttgagctg tttatagctg gcaagagtat
     7261 tcgggcaagg caagctgaaa cggcgagagg gcacaatttg gaacacatca ccgatattaa
     7321 tatggtgttt gagtttgcgg ataatcgctt tgaaatcttc atcttcaata ttggcggttg
     7381 cctcactcgt tgcggtttgg ttcgctagag gcagctcaat atgtgacaga tttgcaagtt
     7441 tttgcgtaaa ttcgaccgct tgttggttca aattggtttg ttcattcggt tcaaaacaga
     7501 aggtgtttag caccgcagtt tcggtttggt ggtcgattgt aaccagttgc tctgctaaat
     7561 agaaagtgta atctgggcaa cttaagccat catcttgcag gctgatattt tccatcggaa
     7621 taaaatttgc caccaaatcg tagctaaata atccgcccaa atagataggc gatgtggaat
     7681 cagcaaacag ttggctcacc gttcttagcc cgtcaaacac ggtggtggtt ttgagcttgc
     7741 tgtcttcatc taactggttg ctgatggttg ggaaaatcgc ttgcaagcgg tcgtttttgt
     7801 ctaaaaattt gcaagtcgga gcagggttta acaggctcaa tgcgtttgca atcaaaggta
     7861 aaaccgcttc tccgtttggg gttaaagcgt ggaaagtcac ggtttgatct tcacagaaaa
     7921 tatgcactgc cgatttcgca aacagcaaac tttttacact gtttttactt tgaatttccg
     7981 ctgaatctaa taatagcgta tgtgggcgtt cgccgcataa tgcgtaataa acacgggtcg
     8041 tatcggcaaa atagggtaat tctgtttgag taatcgttaa ttgaggcata gcaaattcct
     8101 attcaatttt tcgtactatt aaactagtac attaaaaaga agtcaagcaa ttattccaga
     8161 taattatgcg agcttgggcg aacttggtgt ataattagcc caatttttag aaagtcgaag
     8221 gcttgagact atgacacaat ttttttatat ccaccccgac aacccacagc aacgcttaat
     8281 taaccaagcg gtagagatta ttcgaaacgg tggcgtaatt gtttacccta ccgattcagg
     8341 ctatgctctc ggttgtgcaa tgggcgataa gcacgcaatg gatagaattg tagcaattcg
     8401 taaattgccg gaaaatcaca attttacctt agtttgtagt gatttatccg agctttctat
     8461 ctacgcgttg gtcaataatc aagcctatcg cttaattaag aataataccc cgaatcctta
     8521 tacttttatt ctgccggcaa ctaaggaact tcctcgcagg ctgatgacaa agcgtaaaac
     8581 agtggggatt cgtgtgccgg ataatgcgat cgcattggcg ttaatttccg ccttaggtga
     8641 gccgattctt tcttgctcgt taatgttgcc ggagacggaa atgaccgagt cagaccctga
     8701 tgaaattcgg gatcatttgc aaaatcgggt ggatttaatt atccacggtg gttatttagg
     8761 gcagcagcct acaacggtag ttgacttaac cgatgacgtg ccggttatta ttcgagaagg
     8821 atcgggcgat ccaacatcgt ttaattaaat tgatgttgta tgattaatat atagaattat
     8881 gcgtaggggg gctgtgccag tccgtattaa tatcgttatt tggacaggca caggacctgt
     8941 ccctacaatg aaaatcaaat tcagacgctt gtgaaagcga caaaaggaac cttatgacaa
     9001 cttttcaaaa aaaatcaact gcgactttcc gtgcagacaa acgtggtgaa agccgtccct
     9061 catttaaaaa agaagagcaa aaatctgaac gcaaatttgg taaaacgtca gaaaaaccac
     9121 cacgtccaac ttctaagcca ttaacgcaaa gaattgcaaa aaaagtggaa aaaacgaccg
     9181 ctagtgaagt ggcatctcaa gagaaaaaag ccaaagtagt aggtgaaaag ctacaaaaaa
     9241 tcttagcgcg agcagggcaa ggttctcgcc gtgaattaga agagattatc gctgctggac
     9301 gagtgagcgt ggacggtaaa atggctactc ttggtgatcg tgtgcaggtt agctcatcga
     9361 ctaaaatccg cattgacgga catttagtta atttaatgcc ggcacaaaaa gagatctgcc
     9421 gtgtattaat gtattacaaa ccggaagggg aactttgcac ccgttccgat ccggaaggac
     9481 gatccaccgt atttgaccgc ttgcctcgtt taagtggcgc tcgttggatt gcggtcgggc
     9541 ggttagatat taacacctca ggcttattat tgttcactac cgatggcgaa ttagccaacc
     9601 gtttaatgca cccaagccgt gaagtcgaac gtgaatattc ggtgcgtgtg ttcggcaaca
     9661 ttgacgatgc gatgttacaa cgcttacgca aaggcgttca gttggaagac ggaccggcaa
     9721 actttaaaca aattaaggtt gtgggtggca caggcttgaa ccaatggttt gatgtgactt
     9781 taaccgaagg gcgtaaccgt gaggttcgcc gcctgtggga atcgcaaggg gtagaagtca
     9841 gccgtttgat tcgtatccgt tacggcaata tcaaattaga taaaggctta cctcgtggcg
     9901 gctgggaaga aatgggctta gaacaagtca attacttgcg tgagctggta gggttaccgc
     9961 cggagactga aactaaagtg gaagtggggg taaaccgccg ccgaaccaat atccgtcaaa
    10021 ttcgtaaagc ggtaaaacaa catcaaaaat atcgtggcta aacaccatct ttggggctgc
    10081 attagttctg ctaatgcagc tattttcttt caaaaaagga gcatttatgt cttgggatat
    10141 tgttgcaaca ttggcggtca ctgggattgc cgtattttta tttgcaactg aaaaaatgcg
    10201 aatggacgta gttgcgattt tagtgctgtg ttcattagta ttattagggc aggttgatac
    10261 caaatctgct ctgagtggat tttcaaactc agctactgta accgtaactg caatgtttgt
    10321 attagctgct ggtttacaaa atagtggtgc tttagatagt gtaggcagtt tacttgctaa
    10381 ggtaaaatct ccttggttat tcttgcttgt actctgtggc gtaaatgctg ctgtttctcc
    10441 ttttgtgaat aatacggcag tggtcgcagt attaattccg attgtgattg ccgcagcaca
    10501 gaatataaaa atggctcctt ccaaagccct tattccgtta tcattttctt ctcaaatggc
    10561 aggtgtttgt acactgatcg gcacttccac taatctatta gttaatgcaa tcgctcaaaa
    10621 gcaagggcat tccggtttcg gtatgtttga atttgcccct ttggggatta tttttttagt
    10681 ggttggggtt gcctatttat tagtgaccag ccgtttctta ttacccgaat cacatttgca
    10741 acttgaagat ggtgaggggt ttggaaaata tgtttctgaa cttaaagtaa ataaagactc
    10801 tgtattaatt ggcaaaagta catttgaatc aggattaaat gaagaattta atctatttac
    10861 tattggtgtt ttgcgtgatg gggaaagatt atcgacaccg agtcatcaag tattgcaaaa
    10921 acatgatatt ttattgttgc ggggtgaatc ggaaaattta gcaaaagtac gagaaaaata
    10981 tggattgcac cacgttgtgt atggacgccg tgagaatgat gaagataatc tggatgaaga
    11041 cttgatggtg gctgaagtga tgatttctcc tatttctcgt tggataggag ggactattcc
    11101 tattttacaa cagcgttgga ataaaaatgc aacggtgtta ggcattcaac gccaaagtaa
    11161 agtaattcgt gagcgtttac gcaccactgc ttttaaaatg ggggatattt tattactcac
    11221 attaccaaaa gaggatatgg agacgttacg ccaagataaa gactttattg tgttatcttc
    11281 tgatttagtc aaaacggagg aatcgtggaa aagtaaattt gctttagggg taatggtttt
    11341 ggtggtggca acagcagcct taggctgggt tcctatttca gtgagtgcct taattggtgc
    11401 agttgcgatg tgtgttgctg gttgtttaac ggctgaagaa gcctatcaat ctattgactg
    11461 gaaaatcatt ttagtcttag ctggattact gccattaggt gaagcgatgg caaatagtgg
    11521 ggcggcgcaa tttattgttg ataacacgct tggtaaagta ggggagttcg ggcctttagt
    11581 ggtgttagct gtattatatt tactgacaat ggtgttaacc gaatttatga gtaatgcagg
    11641 gactgccgtg ttgcttacgc ctattgcggt ttctaccgct aaaatgttag gggtagatgc
    11701 ttccccattc attattgccg taatgtttgc ggctgcgacc agctttatga cccctgttgg
    11761 ctatcaaacc aacacgatgg tatacggtgc aggtggctat aaattcacag attttattaa
    11821 aattggttta ccgctaaatg taatctattg gattttaggg atagtattaa ttccgatttt
    11881 cttccctttt aatccataat tgatagataa ttatagaaaa aaggtttaca gatcagaaac
    11941 tctgtaaacc ttttttattc agcaataaat caattttcta ttggaaaatt accattgata
    12001 acccatgcca atactaccac caaagtcgcc tctggtattg ctgttaccag ttaatttata
    12061 gataaccttc ccgttatctg aaatccgaga ataacctact gcgattgcag cttcattacg
    12121 gtatgtatct ccagccgttg ctaacatact tttacctggt agatatgctt gcggtaaacc
    12181 tgcggttgca gttgcaccag caataccagc gcgtaaacgt ttatcaactt tgtttacttt
    12241 tgaatcaata ttattgatct tattattgat atttttttct gttgctttta attggctaaa
    12301 gttaactgca tcagtatctt cagttcctgc ttttacgtta gtcacttttg ttcctgctgc
    12361 attaatacct gttttagtta tactcggtcc ccctacaata gttaatccat tagtatcaat
    12421 ggttgtatca ccagtcttaa cagtatcggc tacagcaatg ttagctgtta ctgtttgagc
    12481 tgtgacagaa ttaactttaa tatctttagc taatttaacc gttaatgaac cattaccatt
    12541 tgaaataacc ccgatattat tatcagttag ttgtgattcg ttagataccc caccttttac
    12601 tgtaacagta gaacctaatt tacgttgaga tggcgtgccg gtatcacctg caaatgttag
    12661 tgggctggtt actgcatcat ttaacgcagt aattgcagag cctacattat tgaccgtttt
    12721 actaacttca tttgtaggag cgccatcaac cacagtatag cttggggctg aaacagcacc
    12781 atttgcattt acacttgaat taccacctaa agcggtagca atagtatttg ccgtatcgta
    12841 aagttggcta ccattaactg catctgctga gataggtgaa atatcaccat cagctacatt
    12901 agttattttt aatttgccag catcgacacc tgtcattgtg acacttgggc cattattaat
    12961 ggttaagccg ttgttattta gttttgaatt accaacagct acggagccgg caggagttaa
    13021 atcaatgtct ttcgctaatt taactgttaa tgtgttagca tctgttgcca ctacaccgat
    13081 attattatca gtcaatatgg ttgcatcggc cccaccttta acattcagag aagtacctaa
    13141 tttacgaaca atttcagtac cagcatcatc tacaaaagta agtgctccat tacttaactc
    13201 attcactttc gtgtttaaac catcaatttc ggtataagca gcataaagtt gtgaaccgtt
    13261 gatagcatcc gttgatgagt ccaaaatacg acctgctgca acattcgtta aagtacgttc
    13321 attgcctaca gaaccaatac ttacagttga gcttggcgta gtacctgcaa atgtgtatgt
    13381 attgccattt agcgttgcac tttttgttgc aactgtggct actgtttcag agttagtacc
    13441 taatgcaaca gaaccttggt gtgttgcttt tgcattttgg ccaagagcca ctgcagcagt
    13501 tgttgttgct tgtgatgaaa cacctaatgc aatagaagct acaccggctg catttgcact
    13561 attacctaaa gcaatcgcag agctacctgc agcattggca tttctaccca cagaagttga
    13621 ccatattcca cctgcattag cagagttacc taaagcggtt gactgtgtac ccgaagcatt
    13681 tgcgttatag cctgcagcaa gagaatctgc accgattgaa cttgcttcat aacctacagc
    13741 ggttgaattt tcaccggtag cttcagattt agagcctaat gcagttgcac gggtagctgt
    13801 cgctgttgaa gctgtaccaa tagctgttga ggtatcagca tttgcattgg ctgcagaacc
    13861 aaccgcgagg gcatttgttg catttgcatt cgcattgtag cctatagaag tggcattcat
    13921 accatcagct gttgcgcgag gaccaactgc agttgtacgt tcaccgtttg cttctgcttc
    13981 agagcctaat gcggttgcca gctcaccatt agcacttgtt gcaacgccga tagccattgg
    14041 attaacaccg ctagagcctg aattatcata gttagcacgt tgaatgccat catctgaaat
    14101 actaacataa tgagttgcaa atttgctgat agcttgtttg agttgactga cattgaccgc
    14161 atcagtatct acatcgcctg cggcaacatt ggcgatttta ttaccgccat tatctaagcc
    14221 agatttagta agacttaccg gtttgtctgc aacgccgtta gcgatggtga tacctgtatt
    14281 gttaacaacg gtatcacctg ttgttaatga accattagcg cctaagttaa ctttttctgc
    14341 taattttatg gttaaagtac tattgccatc agctacaaca ccaatattat tctcggttaa
    14401 tatgcctgta gatccgcctt tgatcttgac tgttgaacct agatggcgct caaaattagt
    14461 tcctgtatca ccggcaaagg ttaacggact gatcaccgct gtgtttaatg cgcttagtgc
    14521 tgcagaaaca gtagtgtatc tcccttgttt gccttcttta tctgcatctg gtgtgccatt
    14581 cactaaagcg taggttggga aagtgatatt tccattttca gtaacagctg ccccaccacc
    14641 taagatattt gcggttgttg cagcaacatt acctatagct tgttgtgtta aatataattg
    14701 tgaaccgttt atggtatctg tagagcttaa agatatacgt cctgcagcaa cattggtgat
    14761 agttctctct ttgccttccg ccccaatact tactgtagca attggatttg ttccagcaaa
    14821 gtcactatat gtaataccat ttacagttgc atttgtagtt ggtatggcta tagctgtaac
    14881 tgagttgcta cctagcgcta tcgaatcggt atgttcagca gtggcatttc gacctatagc
    14941 ggttgcatta aaggcggaag catttgatga ttctccgatt gcaattgtgc gttgatttgt
    15001 tgctttagcg cttaccccta gtgcaacaga agccgcgcct gatgcagtag cacgattgcc
    15061 taaagcggtt gcagaacctc cacttgcatt ggcttcacga ccaaatgcag aagcataatc
    15121 gctggttgca cccgcattag taccaacagc agtagttaaa tttgctgttg catttgcata
    15181 ataacctaat gaggttgcac cgtggcctga agtcttcgct tcataaccaa ttgctgttga
    15241 gttatcgcca tttgcttgag attttgcacc aattgctgtg gagtgaatag ctgttgcgtt
    15301 agcttcagca ccataggcgg agctaacaat accagttgca ttggcatgac tacctacagc
    15361 agttgctttt cctattaccg tttctcctgt tgctgctgta gttttgtaat tattaacacc
    15421 atttgcaaga gcggaattac cgatggcgat attatcatca ctggttacat ttgtagtagg
    15481 tcctgctagt tttgcattag cataagtacc aattgcaata ttgtggctac cactagtacc
    15541 gtctccagca gtattaccaa tagaaatcgt attgtttcct gttacattag agctagccga
    15601 ataaccaata ccaatattgt attctgtgct gttagagtga tttaatccgg catgatcgcc
    15661 aataaaaact tcacgtaagc ccattgcggt tgcattgtac cctactgcta cggaacgttt
    15721 atcggcagtg gcttgcccac caacagctgt tgaagcaaaa ctagcgttag caaagcctcc
    15781 taatgcagtt gaaaaatcgg ctgtcgcggt tgtgttatac cctaatgctg tagaaacttt
    15841 accgctattt ccttctaagc ctgttattgt gcttactagt gttgagttaa ctttagatcc
    15901 atcaccaatt gcgatagatg tttgtgggtt attatctggt atggtcccat aggttggtga
    15961 ataggttgca gcacttgcaa aacctgcaga aagcgcaaga cttagtgtgc tgagtttaat
    16021 aatattagtg gttagtgatg tatttgttgc attagattta ttagcacttc ttgataattc
    16081 agaagcaaca atccaagttc gttttgcatg gttccaa
//
LOCUS       DANLZD010000054        15824 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.054, whole genome shotgun sequence.
ACCESSION   DANLZD010000054 DANLZD010000000
VERSION     DANLZD010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15824)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15824)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15824
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.054"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(154..1188)
                     /locus_tag="PXE26_001229"
     CDS             complement(154..1188)
                     /locus_tag="PXE26_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL5593817.1"
                     /translation="MKTVIADNSAEFVNEISQLIQSSKQRMTVAVNAELTLLYWHIGK
                     RINDYILQGERAEYGQEVVKNLAQSLTEQFGKGWSKRHLNYTMQFATTFPNLEIVHAL
                     RAQLSWTHFKQIIHIDDPTKRGFYATMAAQERWSTRTLEDRIGSLLFERTAISKKPDE
                     TIIAELSLLREKGEYNQSMVLKDPYILDFLDLNDRYMERDLEDAILREIEQFLLELGA
                     GFTFVARQKRIQIDNDDFYIDLLFYNRKLKRLIAIELKTESFKHSHKSQMELYLAWLA
                     KYEQEADENPPLGMILCTGKKQEQVELLDLKNSDIHIAEYMTVLPSKAVLEQRLHLAV
                     ERAKERFLLK"
     gene            complement(1231..1491)
                     /locus_tag="PXE26_001230"
     CDS             complement(1231..1491)
                     /locus_tag="PXE26_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593818.1"
                     /translation="MKPILYFADWCPDTAPFVAELDRLGIEYEPCDITKGGSTLKPFL
                     KLRDTHSAFDHAKANGYIGIPALLIEGEKVVLDLAELEGIFG"
     gene            complement(1571..2479)
                     /gene="glyQ"
                     /locus_tag="PXE26_001231"
     CDS             complement(1571..2479)
                     /gene="glyQ"
                     /locus_tag="PXE26_001231"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HDL5593819.1"
                     /translation="MSTKFNVKTFQGMILALQDYWASKGCTIVQPFDLEVGAGTSHPM
                     TCLRALGPEPMAFAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLDS
                     LKMLGFDPTQNDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPV
                     TGEITYGLERLAMYIQGVDSVYDLVWSDGELGKTTYGDVFHQNEVEQSTYNFEYADVD
                     FLFQCFEQYEKEAQYLLGLEKPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILR
                     IRALTKGVAEAYYASREALGFPGCKK"
     gene            2674..3285
                     /locus_tag="PXE26_001232"
     CDS             2674..3285
                     /locus_tag="PXE26_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentahemic C cytochrome"
                     /protein_id="HDL5593820.1"
                     /translation="MKSLSKIAFCFLAFIMPTFCFAGSNSYTTETIPLFADENLTQKI
                     GQLEAGAEIKLVQTTAKAAEIELNLWRKSKGFGRIWYHSFSKNITDAVFEKSFISNNP
                     LLEIVESKEDPNTGLVWQKVKMNVWVENAEFTQDLTNFWANTKNTYKTECSVCHKQRD
                     PKMHDANEWIAVFNGMVGFTDMDEATQKKVLRYLQMNAASSSQ"
     gene            complement(3369..3986)
                     /locus_tag="PXE26_001233"
     CDS             complement(3369..3986)
                     /locus_tag="PXE26_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5593821.1"
                     /translation="MILVCGANGLLGRAICDKLPREKTIAVLRKDAMDTFFSERNIAV
                     EIADLLDLESCNALLQKTQPEILITVVGGKNEQGIRSDKTANINLIKAVEKYSPTTKV
                     VLVTSVGCAEQWDLISPLAQQALGEALKAKTEAEAYLQQTALNWLIIRPGGLNNDEVN
                     DEYQIVRDLPNERKMYVSRKSVATGIVRLLDSTENHQIFSIINRG"
     gene            complement(3989..5806)
                     /locus_tag="PXE26_001234"
     CDS             complement(3989..5806)
                     /locus_tag="PXE26_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme anaerobic degradation radical SAM
                     methyltransferase ChuW/HutW"
                     /protein_id="HDL5593822.1"
                     /translation="MIIKDTHWTSQQASPNAFPERQALMPIWGGKNIERNQWQSLWLE
                     QAPNALLQDGLAYFHIPFCASHCIFCGFYRNAWKENYSQIYTDRVISELRYESSLWRG
                     QGKIHAVYFGGGTPTALHTEDLVRLIRACYRYLPLAEDCEFTIEGRISHFDIDKAKAC
                     IEAGVNRISIGIQTFNSEIRKRLGRKHSGEEAQTYLKALSELNAVIVADLIFGLPNQT
                     DDIWQNDIEIATSLPISGLDIYAFNNYPFLPINRLIEHGKLPAPAGFDTQSLHYAYAV
                     EKLKAQGWQQVSNNHFAFPNRGERNRYNTLVKSNMPCLAFGSGAGGNFGGLSYQVQSD
                     LKTYLDSPLDQKSLSFLSKHGEHKALLGVIQHSMELGYLDTTPFEQNAKAEKLLQQWE
                     ALDLLKREKNQVYLNTSGRYWSPTLIRKLMLTLPQSSKDNNMITPLTKELENKLRTNL
                     KENPGQILEMLAGMNQCSLESVINCLPKEMVMQTGGERFVEIMQAIAGWNEAVTFIIH
                     TPDAIAEVTAKLPQGKIGRGFYNFEHGVDGGIHGHLRYENCAAIYLLDRPFMGKRTVA
                     LTFINQSGEAMFKIFVGRDEQGQLRENQIQAMRKLIGGC"
     gene            complement(5963..6652)
                     /locus_tag="PXE26_001235"
     CDS             complement(5963..6652)
                     /locus_tag="PXE26_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005577085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HDL5593823.1"
                     /translation="MFMYLSHPLDPKDLAWPGEPVVEVTRCTDVGEETPFSSFITKLP
                     NHCGTHMDAPRHFVKDGLSINELPIEYFCHKEVALIEIPKGEAEGITKEDLLPYVDIL
                     SKVSFAFLRTGFEKYRTENPAIYQNECPYISTGAGQYLSDTFPNLKGVGIDFLALGSP
                     SSRVPDAENPKNCHRAILGYYTGRFTTVIEDMHLAELPKNANIKQFFNAPWRIKGLDS
                     SQVTCIVELQQ"
     gene            complement(6664..8004)
                     /locus_tag="PXE26_001236"
     CDS             complement(6664..8004)
                     /locus_tag="PXE26_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HDL5593824.1"
                     /translation="MLKKTLLFTLLLSHSLYAEDMIQENKSANITLLAEITAQGQKIN
                     GVALEYPDNVLSGSDLRQLYQVKTALDSAEKENRSVLKAYVNNEPKVTALPQAGKFVI
                     IELDTADKNAATYSVKDANKAPMKFKSKDENGNIVETEKVQAVKIPEFFANRLIYSVE
                     QKGLLKLTSGTTLGKTEWTQTAEPDKIKTPYLDDFVAKQVSLDQSGNKLNYRLYSPLQ
                     KNGEKYPLVIFLHGSGQVGSDNLAHLLSSKGAIATLPYAPSFVLAPQYDQVFDPFDNA
                     AKGQKGGIHWQTENRINLVLKMIDETLKANPQIDTTRIYINGLSRGAEGGLNLLLARP
                     NFFAGALLMSGREAYTNEWVDGNATKTNLAAIKHIPIWFFHSKEDKVSPVKGSRINYR
                     ILKDELNAPNVKYTEFTFEQAGDNGIVNNNPHNTWDAVYNSPEVIGWLLQQKRH"
     gene            complement(8066..9424)
                     /locus_tag="PXE26_001237"
     CDS             complement(8066..9424)
                     /locus_tag="PXE26_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntT protein"
                     /protein_id="HDL5593825.1"
                     /translation="MSNEMLILIGLASVVALLVIMIKGKVHPFLALGLVSIAVALTAG
                     IPMSKVIPTLISGMGSTLGSVALIVGLGAMLGKIIEKSHGADVLANWLLQRFGEKNAP
                     FALGMTGFIFGIPVFVDVGFIVLLPIIFSVARRLGGNILVYSLPIGLAMLLVHVLVPP
                     HPGIVAGAQNLNADIGFVLGIGLVAALPAYLIGQKFIPFFTKNNFVKVVTSTDLLQHQ
                     KDLIKEKGIELPSFGKVLAMISFPLILIMLGTVTATTLPKEHIVREVFSMVGSSPFAL
                     FVAVCLSAYVLGFRYGWTKHKLEEVLESALAPIAGIILITGAGGMFGKVLDASGVGKA
                     LADVLANTGLPLLVLSFILSALLRAAQGSATVATITTTTILAPAAVAAGYNDLQLALL
                     TAAIGAGSMTLSHVNDSLFWVWTKFFNVPVSVGLRTWTFLTTIFGVIAFAVVGIIWML
                     FV"
     gene            complement(9477..10253)
                     /locus_tag="PXE26_001238"
     CDS             complement(9477..10253)
                     /locus_tag="PXE26_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005547735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxypyruvate isomerase family protein"
                     /protein_id="HDL5593826.1"
                     /translation="MPKFAANLTMMFNEVPFLDRFEAAANAGFKYVEYLWPYDYPAAE
                     LKAKLEQYGLKQVLFNTAAGDVAQGEWGVSAIPGREADSHRDIDLALEYALALGCENV
                     HVMAAVVPEGEDREAYKQTFIKNVQYAADKFKPHGINVLLEALSPEVKPNYLLKSQFD
                     TLEIVEAVNRDNVFVQLDYFHAQNVDGNLSRLTDKLKGKFAHIQIASVPDRHEPDEGE
                     INYQYIFNKLDEIGYEGYVGCEYKPRAETTSGLGWFEQYK"
     gene            complement(10255..10887)
                     /locus_tag="PXE26_001239"
     CDS             complement(10255..10887)
                     /locus_tag="PXE26_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014668373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HDL5593827.1"
                     /translation="MTEQEQKIEMVNLARSLFERGYTVGGAGNLSVRLDENRILVTPT
                     GSSLGRLEADRLSVLDMQGNVLSGDKPSKESVFHLAMYQKNPACQAIVHLHSTYLTAL
                     SCLENLDTDNAMRAFTPYYVMRVGKLPVIPYYRPGDINIARELGERALDGKAFLLANH
                     GVVVTGSDLRDAVDNTEELEETSKLYFILQGQKVRYLTDDEVNDLKNRGK"
     gene            complement(10884..12125)
                     /locus_tag="PXE26_001240"
     CDS             complement(10884..12125)
                     /locus_tag="PXE26_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005754893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HDL5593828.1"
                     /translation="MLGIIADDFTGASDIASFLTENGLKTVQMNGVPKTTLNSQVDAI
                     VISLKSRSNPVEEAIQQSLQALDWLKQNGCSQFYFKYCSTFDSTEKGNIGPVTDALMA
                     ALDTDFTVVTPALPVNGRTIFNGYLFVGDVLLNESGMRNHPITPMKDANLVRLMDAQS
                     QGKTGLVAYADVIQGAERVKARFAELKQQGYKYAVVDAADNSQLAVLAEAVADFQLVT
                     GGSGLGAYMAAYRSGGKKGTNAFVPSKGKTVVLSGSCSVMTNTQVAAYQQKAPSYFLE
                     AEKAIQDPNYVETLYQWVIANLDGDFAPMVYATVPPEKLKEIQTQFGGDKASHAIENT
                     FAKLAEKLQAAGVTNFITAGGETSSIVVQQLGFSGFHIGKQIAPGVPWLQAVEKPIFL
                     ALKSGNFGKEDFFSFAQEMFV"
     gene            complement(12127..13032)
                     /locus_tag="PXE26_001241"
     CDS             complement(12127..13032)
                     /locus_tag="PXE26_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDL5593829.1"
                     /translation="MSQKYSVAVIGLGAMGMGAAKSCIAAGLDTYGVDLNPNYLETLK
                     AAGAKKVGTSAVDFAAELDAVLLLVVNANQVNAVLFGENGLAQHLKQGTVVMVSSTIS
                     AQDAKNISQKLTDLGLVMLDAPVSGGAAKAAQGEMTVMASGSSEAFEKLKPVLDAVAG
                     KVYNIGEEVGLGATVKIIHQLLAGVHIAAGAEAMALAARAGIPLDLMYDVVTNAAGNS
                     WMFENRMKHVVEGDYTPLSMVDIFVKDLGLVNDTAKSLRFPLHLASTAYSMFTEASNA
                     GYGKEDDSAVIKIFSGIELPKKEGK"
     gene            13206..13964
                     /locus_tag="PXE26_001242"
     CDS             13206..13964
                     /locus_tag="PXE26_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL5593830.1"
                     /translation="MIPLERQREILRLINNNGVASINFLAEQLKVSHMTIRRDIQKLE
                     EQGKVSLVSGGVQSLERLIMELPHDDKSMLFQEQKSAIGSLASQLIPSNTTIYLDAGT
                     TTLEIAHRIIDRNDLLVVTNDFVIAHYLSNSGKCDLIHIGGSVCKENLSTTGSLAAEF
                     LKNLSIDMAFISTSSWNLKGLTTPNENKIPVKKAILEASKQNILVTDSSKYGKVATFF
                     VCPLTVFDQIICDKGLFENVRDALKGLSIKLDLG"
     gene            complement(14104..15495)
                     /gene="ffh"
                     /locus_tag="PXE26_001243"
     CDS             complement(14104..15495)
                     /gene="ffh"
                     /locus_tag="PXE26_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HDL5593831.1"
                     /translation="MFENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVA
                     LPVVRDFINKVKERALGVEVNKSLTPGQEFLKIVQSELETAMGEANEELNLAAQPPAV
                     ILMAGLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFF
                     PTETSQKPVAIAEAALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHAVLNPIETL
                     FTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVG
                     EKTDALEPFHPDRVASRILGMGDVMSLIEDIQRSVDQEKAEKIAAKFKKGDEFTLEDF
                     REQLIEMKKMGGMMSMLDKLPGAKNLPDHVKSQVDDKMFMKMEAIINSMTLKERANPD
                     IIKGSRRRRIALGSGTQVQDVNKLLKQFDDMQRMMKKMRKGGMAKMMRGVKGMMGGGL
                     GGLGGLGSMFGKR"
BASE COUNT         4506 a         3522 c         3100 g         4696 t
ORIGIN      
        1 taaaattact cactaaatga tcgccccctc tttagccaaa gagggggagg ggggagattt
       61 gaaaatctct aaccacccac caacggaata tgcaaccaaa tcgtttccat catactttca
      121 ttttgcaaca tttccgctga ttttaaccgc ttgctatttt agtaaaaacc gctctttcgc
      181 cctttccacc gccaaatgca accgttgttc caataccgct ttactcggca acacggtcat
      241 atattccgca atatgaatat cggaattttt caaatccaac aattccactt gctcctgctt
      301 tttaccggtg cagagaatca ttccaagcgg tgggttttcg tctgcttctt gctcgtattt
      361 cgccagccac gccaaataga gttccatttg acttttgtgg gaatgtttga agctttcggt
      421 ttttagttca atcgcaatca ggcgtttgag tttacggtta taaaacagca gatcgatata
      481 gaaatcatca ttatcaatct gaatcctttt ttggcgggcg acaaaggtaa aacccgcccc
      541 aagttccagt aaaaactgtt cgatctctcg tagaatcgca tcttcgagat cacgttccat
      601 ataacggtcg ttaaggtcga gaaaatccaa aatataggga tctttcaaca ccattgactg
      661 attatattcg cctttttcac gtagcaaact caattcagca ataatggttt catcgggctt
      721 tttggaaatt gccgtgcgtt caaacaataa tgagccaatg cgatcttcta atgtccttgt
      781 actccaacgc tcctgtgcag ccattgttgc atagaaccct cgctttgttg gatcatcaat
      841 atgaataatc tgcttaaaat gtgtccagct taattgtgca cgcagtgcgt gcacaatttc
      901 caaattaggg aaagttgtag caaattgcat tgtataattt aaatggcgtt tactccaacc
      961 tttaccaaat tgctccgtca gactttgagc aagatttttc accacttctt gcccatattc
     1021 cgcacgttca ccctgcaaaa tatagtcatt gatccgtttt ccgatatgcc aataaagcaa
     1081 ggttaattct gcattaaccg caacggtcat tcgttgctta ctcgattgaa taagttgtga
     1141 aatttcattc acaaattcag ccgaattatc tgctattact gtcttcatta ttggctcctt
     1201 tgcaacattt ccgccaaatt caaccgcttg ttagccgaaa ataccctcta attcagccaa
     1261 atccagcacg actttttcgc cttcgatcag caatgccgga atgccaatat agccgttggc
     1321 tttggcgtgg tcaaaggcag aatgcgtgtc tcgcagtttc aaaaatggtt taagtgttga
     1381 gcctcctttg gtgatgtcgc acggctcata ttcaatgccc aagcggtcta gttctgccac
     1441 aaatggggcg gtatccggac accaatcggc gaagtataaa atcggtttca tcgtaaatcc
     1501 ttgtagggac acgatgcttc gtgtccgttt tgtaatttat tgacggacgc caagcgtggc
     1561 gtccctacga ttatttttta caccccggga accccaacgc ttcacggctg gcatagtacg
     1621 cttcagcaac gcctttggtt aaggcacgaa tgcgtagaat gtagcgttgg cgttcagtta
     1681 ccgagatcgc tttacgagca tctaataagt taaagctgtg agcggctttt aaaatgcgtt
     1741 cgtatgccgg caatggcaat ggtttttcta ggcctaacag gtattgggct tctttttcgt
     1801 actgctcgaa gcattggaac aggaagtcca catcagcgta ttcaaagttg taggtggatt
     1861 gctccacttc gttttggtgg aatacgtcgc cgtaggtggt tttaccgagt tcgccgtcag
     1921 accacacgag gtcgtacacg ctgtccacgc cttgaatgta catcgccaaa cgctctaagc
     1981 cgtaggtgat ttcgcctgtc accggtttac attccaagcc gccgacttgc tggaagtagg
     2041 tgaattgggt cacttccatt ccgttcagcc acacttccca acctaagccc cacgccccaa
     2101 gcgttgggtt ttcccagttg tcttccacaa aacgaatgtc gttttgggtt gggtcgaaac
     2161 cgagcatttt caggctgtcg aggtaaagtt cttgaatgtt atccggcgaa ggtttaatca
     2221 ccacttggaa ctggtagtag tgctgtaaac ggttcggatt ttcgccgtag cgaccgtctg
     2281 tcgggcggcg agatggttgc acataggcaa acgccattgg ctcagggcca agcgcacgca
     2341 ggcaggtcat tgggtgcgag gtgcctgccc ccacttctaa atcgaacggc tgcacaatgg
     2401 tgcaaccttt gcttgcccag tagtcttgca gggctaaaat cattccttga aaggttttta
     2461 cgttgaattt tgtactcatt ttattttctc ttgaatttga aaaatggtcg aaaaatactg
     2521 gttattatag cttgtaagca gtcatttttt gggatttttt tgcaaaaaat taagaaatcg
     2581 acataaaatc agttttatga tgtaaatcaa cgcttttttg ctcaatttgt gtaacatata
     2641 acctaatttc tcatctaatt tgtggggttt atgatgaaat cattatcgaa aatcgctttc
     2701 tgtttcttgg cattcatcat gccaacattt tgttttgccg gttcaaacag ttacaccacg
     2761 gaaacaatcc ctttatttgc cgatgaaaat ttgacacaga aaatcgggca gctagaagcc
     2821 ggagcagaaa ttaaattggt gcaaacaacc gcaaaagccg ctgaaattga gctgaattta
     2881 tggcgaaaaa gcaaaggttt cgggcggatt tggtatcatt ctttcagtaa aaatattacc
     2941 gatgcggtat ttgagaaatc ttttatcagc aacaacccac tgttagagat tgtagagagc
     3001 aaggaagatc cgaacaccgg cttggtatgg caaaaagtga aaatgaacgt gtgggtggaa
     3061 aatgccgaat ttacccaaga tctcactaac ttttgggcga acaccaaaaa tacctataaa
     3121 acagaatgca gcgtgtgcca taaacaacgt gatcctaaaa tgcatgatgc aaacgaatgg
     3181 attgcagtat ttaacggaat ggtcggtttt accgatatgg acgaagctac ccagaaaaag
     3241 gtgcttcgct acttgcagat gaatgcggca tccagttctc aataaaatag aaaaagatct
     3301 cacaagcggt ctgttttata gttgcaaaat aaccataaaa tatgcccgct tgccttcgtt
     3361 gaaatatact atcccctatt aataatagag aagatttgat gattttccgt actatccagt
     3421 aaacgcacta tgcctgttgc gacagattta cggcttacat acattttccg ttcattaggt
     3481 aaatcacgca caatctgata ctcatcattt acttcatcat tatttaaccc accgggtcga
     3541 ataatcagcc aatttaatgc tgtttgctgt aaataagctt cagcttccgt cttggctttt
     3601 agtgcttcac ctaaagcttg ctgtgctaat gggctaatta aatcccattg ttctgcacac
     3661 ccaacactag taactaaaac tactttcgta gttggtgaat atttttcaac tgcttttatc
     3721 aaattaatat ttgctgtttt gtcgctacga ataccttgtt cattttttcc tcctactacc
     3781 gtaatcaaga tttccggttg tgttttttgt aacaaggcgt tgcaggattc caaatctaat
     3841 aaatctgcta tttctactgc tatatttcgt tcgctgaaaa acgtatccat agcatctttt
     3901 cgtaagacgg ctatcgtttt ctctctaggt aatttgtcac agattgctcg tcctaacaac
     3961 ccatttgccc cacaaaccaa aatcatgact agcatcctcc aattaatttc cgcatggctt
     4021 gaatctgatt ttctcgtaat tgaccttgtt catcacgccc aacaaaaatc ttaaacatcg
     4081 cctcaccgct ttgattgata aaagttaacg ccaccgttct ttttcccata aatgggcgat
     4141 caagtaagta aatagcagca caattttcat agcgtaaatg accgtgaatt cctccatcta
     4201 caccatgttc aaaattataa aaacctcgcc caattttacc ttgtggcaat ttagcagtta
     4261 cctctgcaat cgcatcaggc gtatgaataa taaaagtcac agcttcattc caaccagcaa
     4321 ttgcctgcat aatttccaca aaacgctcac cacctgtttg cattaccatt tctttgggca
     4381 gacagttaat taccgattcc aagctacatt gattcattcc tgccagcatt tctaaaattt
     4441 gccctgggtt ttcttttaaa tttgtccgca atttattttc taattcttta gttaatggcg
     4501 ttatcatgtt gttatcctta cttgattgag gaagtgttaa cattagttta cgaattaatg
     4561 ttggtgacca gtaacgacca ctggtattga gatatacttg atttttttca cgcttcagta
     4621 aatcaagcgc ttcccattgt tgcaataatt tttcagcttt cgcattttgt tcaaaaggcg
     4681 ttgtatctaa gtaacccaat tccatgctat gttgtatcac accaagcagt gctttatgtt
     4741 caccatgttt actcaaaaaa gaaaggcttt tctgatcaag aggcgaatct aagtaggtct
     4801 ttaaatcaga ttgtacttgg taactcagcc caccaaaatt tccccccgca ccggagccaa
     4861 atgccaaaca aggcatattc gatttaacca aagtattata gcgattgcgt tcacctcgat
     4921 ttggaaaagc aaagtggtta ttgctcactt gctgccaacc ttgtgctttt aacttctcta
     4981 ctgcataagc atagtgtaag ctttgggtgt caaaccctgc gggcgcaggt aattttccat
     5041 gttcaattaa gcgattaata ggcaggaaag gataattatt aaaggcgtaa atatctaagc
     5101 ctgagatcgg taaactagtc gcaatttcaa tatcgttttg ccagatatca tctgtttggt
     5161 ttggcaagcc aaaaattaaa tcagcaacaa tcacagcatt taattccgat aaggctttta
     5221 aataagtttg agcctcttcg ccactatgtt tgcgccctaa acgtttgcga atttcggagt
     5281 taaaagtctg aataccaata gaaatacggt tcacgcctgc ttcaatacaa gccttagcct
     5341 tatctatatc aaaatggcta attctaccct caatagtaaa ttcacagtct tcagcgagtg
     5401 gcaaataacg ataacaagct cgaatcaatc gtactaaatc ttctgtatgt aacgctgttg
     5461 gcgttcctcc accaaaataa acggcatgaa tcttaccttg tcctcgccat agtgaagatt
     5521 catatcgaag ttcactaatc acacgatcag tataaatctg gctataattt tccttccaag
     5581 cattgcgata aaaaccacaa aaaatacaat gactagcgca aaacggaata tggaaataag
     5641 ctaaaccatc ctgtaataac gcatttggtg cttgttccag ccataaagat tgccattgat
     5701 tgcgttcaat atttttccca ccccaaatag gcataagtgc ctgtcgttct gggaaagcat
     5761 ttggagaggc ttgttgagat gtccagtgtg tatcttttat aatcattatc gaaacaaaat
     5821 agtgctataa acaaggtcat atttataaca aaattaagtt atgaatgact tgattaaaat
     5881 caaataataa ttattttcaa ttaatgattg agttatgctt actatagtaa atagcctctc
     5941 ctaaaatgaa tatatctgtg gtttattgct gtaattccac aatacaagtc acttgactgg
     6001 aatctaaccc tttaattcgc cacggtgcat taaaaaactg cttaatgttg gcatttttag
     6061 ggagttccgc taagtgcata tcttcaatca cagtggtaaa cctgccggta tagtagccta
     6121 aaatcgctcg atggcaattt ttagggtttt ccgcatcagg cactcgggaa gaaggagacc
     6181 ctagtgccaa gaaatcaatg cctactcctt tcaaattcgg gaaagtatca gataaatact
     6241 gcccggcacc ggttgaaata taggggcatt cattttgata aatagcaggg ttctcggttc
     6301 tatatttctc aaaccccgtt cgtaaaaagg caaaagacac cttggagaga atatcgacat
     6361 aaggcaataa atcttctttg gtgatccctt ctgcctctcc tttgggaatt tcaattaaag
     6421 cgacctcttt atggcagaaa tactctatcg gcaattcatt gatacttaaa ccgtctttca
     6481 caaagtggcg aggagcgtcc atatgtgtgc cgcaatgatt cggtagtttc gtgataaaac
     6541 tgctaaatgg cgtttcttca cctacgtctg tgcagcgagt cacctcaaca acaggttctc
     6601 ccggccaagc taaatcttta ggatctaacg ggtgagacaa atacataaac acagtgagcc
     6661 tccttagtgg cgtttttgct gaagtaacca cccaatcacc tcagggctgt tatacacagc
     6721 gtcccaagta ttatgagggt tattattgac aatgccgttg tcgccggctt gttcaaaagt
     6781 gaattcggta tatttcacat tgggggcatt taactcatct ttgagaatgc ggtagttaat
     6841 gcgagaacct tttaccggcg agactttgtc ctctttacta tggaaaaacc aaatcggtat
     6901 atgtttaatt gccgccaaat tcgttttggt ggcattgccg tccacccatt cgttggtgta
     6961 ggcttcacga ccgctcatta ataatgctcc ggcaaagaaa ttcgggcgag ccaacaacag
     7021 atttaagccc ccttcagcac ctcgagataa gccattgata taaatgcgtg tggtatcaat
     7081 ttgaggattg gcttttaggg tttcatcaat catttttaac acgagattga tacgattttc
     7141 cgtttgccag tgaataccgc ctttttgccc tttggcggca ttatcaaatg ggtcgaatac
     7201 ttggtcgtat tgcggagcaa gtacaaaact tggggcataa ggcagggtgg caatcgcccc
     7261 tttactggaa agcaggtgag caaggttatc cgaaccgact tgccctgaac cgtgtaggaa
     7321 aatcacaagc gggtattttt caccattttt ttgcaaaggc gaatagagac ggtagttcag
     7381 tttatttcca gactggtcta agctcacttg ttttgcgaca aaatcatcga gataaggggt
     7441 tttgattttg tcgggttcag cggtttgtgt ccattcagtc ttgcctagag ttgtgccgct
     7501 ggttaattta agcaagcctt tttgttccac cgaatagatt aggcgatttg caaaaaactc
     7561 tggaattttg accgcttgta ctttctctgt ttctacaatg ttgccgtttt catctttgga
     7621 tttaaatttc atcggcgctt tattagcatc ttttacgcta taagttgccg catttttatc
     7681 tgccgtatcc aattcaataa tcacaaattt accggcttgc ggaagtgcgg tcacttttgg
     7741 ctcattattg acataggctt tgagcaccga acggttttct ttctccgcac tatctaatgc
     7801 cgttttgacc tgatacagtt ggcgaagatc gctgcctgat aagacattat caggatattc
     7861 caatgccacg ccgttaattt tttgaccttg agcggtgatt tcggcaagca acgtaatatt
     7921 cgctgattta ttttcctgaa tcatatcctc tgcatagagg gagtgagaaa gtaatagcgt
     7981 aaataaaagt gtttttttca gcataggttt ctcctaaaaa aatccacctc ataagaggtg
     8041 gattttaagc agtaacagag tgatattaaa cgaataacat ccaaataatg ccaacaacgg
     8101 caaaggctat tacaccgaaa atagtcgtta aaaacgtcca agttcttaag cctacggata
     8161 caggaacatt gaagaatttc gtccataccc agaagagtga atcattcacg tgggataatg
     8221 tcatagaacc tgcaccaata gctgcagtaa gaagtgctaa ttgcagatca ttataacctg
     8281 ctgctacagc tgcaggagct agaatagttg tagtagtaat agttgccacc gttgcagaac
     8341 cttgtgctgc acgcaataat gcagaaagta tgaaagaaag aaccaataac ggtaagcccg
     8401 tgttggctaa tacatctgct aatgctttac ctacgccact ggcatctaac actttaccga
     8461 acataccgcc tgcaccggtg attaaaataa tccccgcaat cggtgctaac gcagactcca
     8521 gtacttcttc taatttatgc ttagtccaac cgtatctaaa acctaataca taagcagaaa
     8581 gacaaacagc cacaaataag gcaaacggag agcttcctac catactgaat acttcacgca
     8641 cgatatgttc tttcggcaag gttgttgccg ttactgtacc taacataatc aggattagcg
     8701 ggaaagaaat cattgctaac actttaccaa aagaaggtag ttcaatgcct ttctctttaa
     8761 tcaaatcttt ttggtgctgt aaaagatcgg ttgaagttac tacttttacg aaattatttt
     8821 ttgtaaagaa cggaataaat ttttgaccga ttaaatatgc aggtagcgct gctactaagc
     8881 caattcccaa tacaaagcca atatctgcgt ttaagttttg agcacccgct acaatacctg
     8941 gatgaggtgg aactaaaacg tgaacaagta acatcgcaag cccgattggc aaagaataaa
     9001 caaggatatt tccccctaaa cgtctcgcta cactaaaaat aatcgggagc aatacgataa
     9061 aaccaacatc aacgaaaaca ggaataccga atataaaacc tgtcatacct aatgcaaagg
     9121 gagcgttttt ctcaccaaaa cgctgtaaca accaatttgc taatacatcc gcaccgtgag
     9181 atttttcaat gattttccct aacattgctc ccaaacctac tatgagtgca acgctaccta
     9241 aagtacttcc catacctgaa atcaaggttg ggatcacttt actcattgga atacctgcag
     9301 ttaaggcaac tgcgatactc actaacccca atgctaagaa tgggtgtact ttacctttaa
     9361 tcataatgac cagaagagca actacgcttg ctaatccaat caaaattaac atttcatttg
     9421 acataaagtt tccttctaaa tgttgtattc acgtatttat ccgctaatca tcgtggttat
     9481 ttatactgct caaaccaacc tagtcctgag gtggtttccg ctcgtggttt atactcgcaa
     9541 cctacatagc cttcataccc gatttcatcg agtttgttga agatatattg gtagttaatt
     9601 tccccttcgt ccggttcgtg gcgatctggc acagaggcaa tttgaatgtg ggcaaattta
     9661 cccttgagtt tgtcggttag gcgagataag ttgccgtcca cattctgtgc gtggaagtag
     9721 tcaagctgta caaacacatt gtctcggttt accgcttcca caatttctag cgtatcaaac
     9781 tggcttttaa gcagataatt cggtttcact tcagggctta gggcttcaag caagacgtta
     9841 atgccgtgcg gtttgaattt atcggcggca tattgcacgt ttttgataaa ggtttgttta
     9901 taggcttcac gatcttcgcc ttctggcacg accgctgcca taacgtgaac attctcacaa
     9961 cctaaggcga gggcatattc caacgctaaa tcaatatcac gatggctatc agcttcacgc
    10021 cccggaatgg cagaaacacc ccattcacct tgagcaacat ctccggctgc ggtattgaac
    10081 aacacctgtt ttaagccata ttgctcaagt ttggctttca attctgctgc cggataatca
    10141 taaggccata aatactcgac atatttaaat ccagcgttgg cagccgcttc aaaacgatct
    10201 aaaaacggca cttcgttaaa catcatcgta aggtttgctg caaatttagg cattttattt
    10261 tcctctgttt ttcagatcat tgacttcgtc atcggtgaga taacggactt tttgaccttg
    10321 tagaataaaa tagagcttgg aggtttcttc caactcttct gtgttatcca ccgcatcacg
    10381 caagtctgaa cctgtgacta ccaccccgtg atttgccagt aaaaaggctt tgccgtctaa
    10441 ggctcgttcc cccagctctc gggcaatgtt gatgtcgccc ggacggtagt aaggaatgac
    10501 cggcaatttt cctacccgca tcacatagta aggggtgaaa gcacgcatag cgttgtcggt
    10561 atccaaattt tccaagcaag aaagtgcggt taaataagtg gaatgcagat gcactattgc
    10621 ttggcaagcc ggatttttct gatacatcgc caagtggaat accgattctt ttgaaggttt
    10681 atctcctgaa agaacattac cctgcatatc caatacggaa aggcggtctg cctctaaacg
    10741 cccgagcgaa gagccggttg gggtaactaa aatgcgattt tcatctaaac gcacggagag
    10801 gttgcccgca ccgccaacgg tatagccccg ctcaaacagc gagcgggcaa gattgaccat
    10861 ttcaatcttt tgttcttgtt ctgtcataca aacatctcct gagcaaaact gaagaaatct
    10921 tctttaccga agttacccga tttcaatgca agaaaaatcg gtttttcgac cgcttgtaac
    10981 cacggcacgc ccggtgcaat ttgtttgccg atgtggaaac cgctgaatcc aagttgctga
    11041 accacaatgc tcgaagtttc accgcctgcg gtaataaagt tagttacgcc tgcggcttgt
    11101 aatttttcgg ctaatttggc aaaggtattt tcaatggcgt ggctggcttt atcgccgccg
    11161 aattgggttt gaatctcttt caatttttca gggggaacgg tggcataaac cattggggca
    11221 aagtcaccgt ctaggtttgc aatcacccat tgataaagcg tttctacata gttcggatcc
    11281 tgaatggctt tttccgcttc taagaaataa cttggggctt tttgctggta agccgccact
    11341 tgggtattgg tcattaccga gcaagaaccc gaaagcacaa cggttttgcc tttgcttggt
    11401 acaaacgcat tcgtgccttt tttgccgcct gaacggtaag ccgccatata agcccctaag
    11461 cctgaaccgc ctgtgactaa ttgaaaatcg gcaaccgctt cggcaagcac cgcaagttgt
    11521 gaattatcgg cagcatctac taccgcatat ttgtagcctt gctgtttcaa ttcagcaaaa
    11581 cgggctttca cacgctctgc cccttgaatc acatcagcat aggcaaccaa gccggttttg
    11641 ccttgagatt gtgcatccat taaacgcacc aagttggcat ctttcatcgg ggtaatcggg
    11701 tggttacgca taccagattc attcagtagc acatcgccca caaacaaata gccgttgaaa
    11761 atggttctgc cattgacagg cagagccggt gtgactacgg taaaatcggt atctaatgcc
    11821 gccattaggg catcggttac cggcccgata ttgcctttct ccgtgctgtc aaaagtggaa
    11881 caatatttaa agtagaattg cgagcaacca ttttgtttca gccaatctaa ggcttgtaat
    11941 gattgttgga ttgcttcttc cacagggtta gagcgagatt tcaggctaat cacaatcgca
    12001 tcaacttgac tgttaagtgt agttttcggc acaccattca tttgcaccgt ttttagcccg
    12061 ttttcggtta agaaactggc gatgtcactc gcaccggtga aatcgtctgc aataatgcct
    12121 aacatcttat ttcccctctt ttttaggtaa ttcgatacca ctgaaaattt taatgaccgc
    12181 actatcatct tccttgccgt aacctgcgtt gctggcttcg gtaaacatag aataagcggt
    12241 gctggctaag tgaagcggga aacgcaaaga ttttgcggtg tcgttcacca atcccaaatc
    12301 tttcacaaaa atatccacca tagagagtgg ggtgtaatcg ccctcaacaa cgtgtttcat
    12361 tcggttttca aacatccaag aattgcctgc cgcattggtt acaacgtcat acattaaatc
    12421 aagcggaata ccggcacgag ccgccaatgc cattgcttct gcacctgcgg caatatgcac
    12481 accggcaagt aattgatgga taatttttac cgttgcaccc aagccgactt cttcgccaat
    12541 gttatacact ttgcctgcaa ccgcatctaa taccggtttt aatttctcga atgcctcgct
    12601 ggaacctgat gccatcacag tcatttcacc ttgtgctgct tttgctgccc cacccgaaac
    12661 cggagcatct aacatcacca agcctaaatc tgttaacttc tgtgaaatat tttttgcatc
    12721 ttgtgcagaa atggtggaag ataccatcac caccgtacct tgtttcaaat gttgggctaa
    12781 gccgttttca ccgaataaca ccgcattcac ttggttggca ttaaccacca acaacaacac
    12841 cgcatctaat tcagcggcaa aatcgaccgc acttgtgccg actttcttag cacctgctgc
    12901 ttttaaggtt tccagataat tcgggttaag atccacaccg tatgtgtcta atccggcagc
    12961 gatacaagat tttgctgctc ccatacccat tgctcctaag ccgatgacgg ctacgctata
    13021 tttttgactc attgtttatt ccctcaaata aattaatgaa cttgatggcg gtatattaac
    13081 caatagaaaa gataaaatct gtgatgaaga tcacaaatat taacaataaa tgtgaatttt
    13141 tgtgatttta attttggaaa ctaaatctga tataatctct tttaacaatt aaaataggtt
    13201 aaaaaatgat ccccttagag agacaacgag aaatactacg acttattaat aataatggtg
    13261 tcgcaagtat taattttctg gcagaacagc taaaagtatc acatatgaca attcgccgtg
    13321 atattcaaaa gctggaagag caaggtaagg tatccctagt atctggtgga gttcaatctc
    13381 ttgaacgatt aatcatggaa ttaccacacg atgataaatc aatgttattc caagagcaga
    13441 aatcagctat aggatcttta gcatcacagc taattccctc aaacacaact atttatcttg
    13501 atgctggaac tactacatta gaaatagctc atcggataat cgatagaaat gacttactag
    13561 ttgtaacaaa cgattttgtt attgctcact atcttagtaa ttcaggaaaa tgtgatttaa
    13621 ttcatatagg aggaagtgtc tgtaaagaaa acctatcgac aactggttca cttgcagcag
    13681 aatttctgaa aaacctatca atcgatatgg catttatatc tacttcatcc tggaatttaa
    13741 aaggtctaac aacgccgaac gaaaataaaa tccccgttaa aaaagcaatt ttagaggcat
    13801 ccaagcaaaa cattttagtg acagactctt caaaatatgg aaaagtcgca actttttttg
    13861 tttgccctct tactgtattt gaccagatta tttgtgataa aggattattt gagaatgtac
    13921 gagacgcact gaaagggcta agtattaaat tagatttagg ataatcttct taccaatttt
    13981 ttctgagaac gacaagcaat caaaaagtat tatttttgca aataagatat taatagggaa
    14041 agttaacaat cctagcaacg gattgttaac tgattttcgg ctggtactaa taaaatagga
    14101 atattaacgt ttaccaaaca tactgcctaa gccaccgaga ccgcctagac caccacccat
    14161 cataccttta acaccacgca tcatttttgc cattccgcct ttacgcattt ttttcatcat
    14221 acgttgcata tcatcaaact gcttgagcag cttatttaca tcttgcacct gtgtgccgga
    14281 gccaagtgcg atacggcggc ggcgtgagcc tttaataata tccggatttg cccgctcttt
    14341 taaggtcata gaattgatga tggcttccat tttcatgaac attttatcat caacctgact
    14401 tttaacgtgg tcaggcaggt ttttcgcccc cggtagttta tcgagcatcg acatcattcc
    14461 acccattttt ttcatttcga taagctgctc acggaaatct tccaaggtaa attcatcgcc
    14521 ttttttgaat ttggcggcaa ttttttccgc tttttcttga tcaaccgagc gttgaatatc
    14581 ttcaattaaa gacattacat cgcccatacc taaaatgcgg gaagccacac ggtcagggtg
    14641 gaacggctca agggcatcag ttttttcacc cacacctaag aatttaatcg gtttaccggt
    14701 gatttggcga atagaaagtg ccgcaccgcc tcgggcatcg ccatcgactt tggtaagaat
    14761 aacaccggta agcggcaacg cttcgttaaa ggcttttgcg gtgttggcgg cgtcttgacc
    14821 ggtcatcgca tcaaccgtaa atagcgtttc aatcggattc agcacagcgt ggatttgttg
    14881 gatctcttcc atcatttcgc catcaacgtg taaacgaccg gcagtatcca caatcaatac
    14941 atcaaagaaa ttaagcttag cgtgcttcag tgccgcttct gcaatcgcta ccggtttttg
    15001 gctggtttcg gtcgggaaga agtccacttt taacgcttca gcaagggtct gtagctgctt
    15061 gatagcggca gggcggtaaa catcggcaga aactaccaac acctttttct tgtggcgttc
    15121 tttcaggaat tttgccaatt tgccgacaga ggtggtttta cccgcacctt gcaaacctgc
    15181 cattaaaatt accgcaggcg gttgggccgc aagattcagc tcctcgttgg cttctcccat
    15241 tgccgtttct aattcgcttt gtacgatttt taagaactct tgccccggcg tgaggctttt
    15301 gtttacctca acccctaacg cacgctcttt gaccttgttg atgaaatcac gcacaacagg
    15361 gagggcaaca tccgcctcca acaatgccat acgaacttca cgcagggtat ctttaatatt
    15421 atcttccgtt aggcgacctt tgcccgtaat gttacgcagc gttttagaca gtctgtcaga
    15481 gaggttttca aacatatcag ctttctcaat ttgcaaaatt ttaggaaaaa agtaccgctt
    15541 gtgagcggaa agttgccgcc attatacaaa aaaaagcgtt acggttatag ggaaataaaa
    15601 aaacggcata gcgattaaac tatgccgtaa aatttgacga tattcgagga atcattattt
    15661 agttatattg tgcgatcata atactccgaa ttgcgtataa aagtgaagtg atattttcaa
    15721 atttatgtta gaaatgagag gtaaattaca aaattaaagg ggatattatt gtttgaaaaa
    15781 ataagagcga aaagaaaacc ctgatgattg ctcatcaggg cttc
//
LOCUS       DANLZD010000055        15797 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.055, whole genome shotgun sequence.
ACCESSION   DANLZD010000055 DANLZD010000000
VERSION     DANLZD010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15797
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.055"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            37..1017
                     /locus_tag="PXE26_001244"
     CDS             37..1017
                     /locus_tag="PXE26_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5593832.1"
                     /translation="MLDSKNTDLILSEIPNKILFLRHDGKIGDYVVSSFVFREIKKQS
                     PQTQIGVVCSQKNRYLFENNPYIDKLYLVKTKSIPDYIRGGKQLAKEQYDVVIDPTVT
                     LRNRDLLFLRTISAKHYVGYQKQKYRLFDLNVEDRKQHFSEIYQDALALIGFENIETQ
                     YDVPLNATSNQSIKHYLYENQIRNYIALNLFGAGSARRFSEQKINELLSCLKQHSDKP
                     IVLLTFPEVTAKLCSFTKKYKNIFVYEKTKSVFDSIELIRFADLLISPDTATVHIASG
                     LSKKIIAFYSSDEQNFIHWHPNNQAETHILRFRKSVNDLDFAAIKPEWLK"
     gene            1019..1909
                     /gene="ilvY"
                     /locus_tag="PXE26_001245"
     CDS             1019..1909
                     /gene="ilvY"
                     /locus_tag="PXE26_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator IlvY"
                     /protein_id="HDL5593833.1"
                     /translation="MDFQSLKLFLDIAQSRSFIRSAEKNYMTASTLTRHIQRIEEELG
                     QPLFLRDNRQVRLTEAGERFLAFAQQGWAEWQQLQNQLSPAQGDLEGELKVFCSVTAS
                     YSHLPPILGKFRQKYPKVDIKLSTGDPALALEQVQSLAADISVAGKPEFLPNNIVFHY
                     IDDIQLSIIAPRVASQATQFLQQSPIDWKNIPFILPVNGPVRKRIDRWFKEQKIKDPI
                     IYATVSGHEAIVPMVALGFGVALLPDIVIKHSPMNNQVSYVNLPSPITPFELGICVQQ
                     KRLQEPIINAFWQLLSDNSA"
     gene            complement(2043..4445)
                     /gene="lon"
                     /locus_tag="PXE26_001246"
     CDS             complement(2043..4445)
                     /gene="lon"
                     /locus_tag="PXE26_001246"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HDL5593834.1"
                     /translation="MAPRKKKAIELPLLPLRDVVVFPYMVMPLFVGREKSIQALRSAM
                     DSNKQLFLVTQQDPNKEEPNAEDMYGVGVIANIIQMLNLPDGTVKVLVEGQTRAKIEQ
                     IHDDENGFWAAIQPIYSEYDDENEELKAIAKTTLTEFENYVKNNKKIPAEIIAKLQKI
                     TLEDRLADTIASNLIAPVKKKQELLEQPNLIARFEALLIAMATEMDTLETETRIRNRV
                     KQQMEKNQRDYYLNEQIKAIQKELGNGDDVEQSELDKLKEKIDAAKLPTEVKDKLNTE
                     FKKLKAMPQSSSEATVVRGYIDWILQMPWHKKSAVKKDLAQAQEILDKDHYGLERVKE
                     RIVEYLAVQSRLNKLKGPILCLVGPPGVGKTSLGQSIANATGRKYVRMALGGVRDEAE
                     IRGHRRTYIGSMPGSLMMKMAKVGVRNPLFLLDEIDKMAQDMRGDPASALLEVLDPEQ
                     NKAFNDHYLEVDYDLSDVMFVATSNSMNIPPALLDRMEVIRLSGYTEDEKMHIARGHL
                     LAKQQENNGLKEGELTIEDSAILSIIRYYTREAGVRSLEREIAKICRKAVKALVLDKK
                     LKSITVSEKNIEEYLGVKRFDYGKMDSQNRIGEVTGLAWTEVGGDLLTIETASVAGKG
                     KFSYTGSLGDVMKESIQAAMVVVRSRAEKLGIAEDFHEKRDIHVHVPDGATPKDGPSA
                     GIAMCTALISSLTGNPVRKEVAMTGEISLRGKVLPIGGLKEKLLAAHRGGITTVIIPK
                     ENEKDLEEIPENAKAALDIHAVETIDEVLALALENPPMGIEILSKAEIKVKKSRAKAT
                     VQ"
     regulatory      4649..4767
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            4943..6040
                     /gene="ribD"
                     /locus_tag="PXE26_001247"
     CDS             4943..6040
                     /gene="ribD"
                     /locus_tag="PXE26_001247"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HDL5593835.1"
                     /translation="MTDVQYMAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQ
                     KAGSWHAERNAILNCEEDLTGATAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRD
                     PNPLVSGKGAAQLRAAGIEVVEDFMRTECDALNPIFFHYIQTKRPYVLLKYGMTADGK
                     IATYTGNSKWITGEAARANVQKSRHEYSAIMVGVETVLADDPMLNSRMENAKQPVRIV
                     CDSQLRTPLDSQLVQTARQYRTIIATLNNDAKKQAEYTACGVEILVTGERDKRVDLAD
                     LLQKLGELGIDSLLIEGGSQLNFSVLEQGLVNRVHCYIAPKLIGGKAAKTPIGGKGIG
                     ELAQAVKLRLKSTELLGEDILLDYEVDLLRN"
     gene            6257..6904
                     /gene="ribE"
                     /locus_tag="PXE26_001248"
     CDS             6257..6904
                     /gene="ribE"
                     /locus_tag="PXE26_001248"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HDL5593836.1"
                     /translation="MFTGIIEEVGQIAQIKKQGEFVVVTVKAKKILTDVHLGDSIAVN
                     GVCLTVTSFTQEQFTADVMSETLKRTSLGELSINSSVNLERAMAANGRFGGHIVSGHI
                     DGTGVVAEITPADNSTWYRIKAEPKLMRYIIEKGSITIDGISLTVVDVDAESFRVSII
                     PHTIKETDLGTKKIGSLVNLENDIVGKYIEQFLLKKEPENPQSKITADFLKNAGF"
     gene            6923..8122
                     /locus_tag="PXE26_001249"
     CDS             6923..8122
                     /locus_tag="PXE26_001249"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HDL5593837.1"
                     /translation="MFKFSTVEEAIQAIAQGKIILVSDDADRENEGDFICAAEFATPE
                     NINFMAKYGKGLICTPISTEIAKKLNFHPMVLENEDNHQTAFTVSVDHIQTGTGISAF
                     ERSLTCLKMLDENAKPEDFRRPGHVFPLVAKDGGVLVRNGHTEATVDLARLAGLKPAG
                     LCCEIMAEDGTMMQMPELQAFAQAHNMPFITIQQLQEYRRKHDSLVNVVSVVKMPTKY
                     GEFKAHSFVETISGKEHVALVKGDIGDGENVLCRIHSECLTGDAFGSQRCDCGQQFAA
                     AMNQVEQEGRGVVLYLRQEGRGIGLINKLRAYELQDRGMDTVEANLALGFKDDEREYY
                     IAAQMFEKLGVKSIRLLTNNPAKIEGLIEQGLNVVAREPIMVEPNEHDLEYLKVKQHK
                     MRHMFNF"
     gene            8328..8792
                     /locus_tag="PXE26_001250"
     CDS             8328..8792
                     /locus_tag="PXE26_001250"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HDL5593838.1"
                     /translation="MATFQGNYIATGLKFGIVATNWHKIFIDQLLNGATDKLLRHGVE
                     EKNIDTVWVPGALEISIAAKKMAQSGRYDAIICLGAVVRGATSHYDVVVNESAKGISS
                     SALETGVPIINGILTVENLEQAIERSGTKAGNKGEECAMVAIEMANLLKALA"
     gene            complement(8838..10346)
                     /gene="lnt"
                     /locus_tag="PXE26_001251"
     CDS             complement(8838..10346)
                     /gene="lnt"
                     /locus_tag="PXE26_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HDL5593839.1"
                     /translation="MNFAKNPPFLTACLLAIILGAIGTFAYSPFDIWILAFASAAGLV
                     WSATLANRKTALWATFAWSIGYFCTGVNWVSVSMTQFGGVPTIVSYIAVFLLACYLAI
                     YNLLFSVVSHRLKLNNPFALAAIFTFTEYLRGVVFTGFPWLQFGYSLIDSPFAGIAPI
                     LGVEGLTFLVIVASSYLVKIIQQENKTVPSLMVLAVIFGLSFATRFLQFVQIDTEKQP
                     LVVSLVQGNIEQKMKWDPQHFNHSVRTYEQLILPLLGNSELIILPESAIPALENQISP
                     LLGSLDHLARQHGSEIIIGTLYQNEQEELFNSSVLLGEKEREYALHSNPRYNKHHLVP
                     FGEYVPFGSVLDWMREVFILPINLSQGSFVQPSFLAKNNRFNMAICYEIIFGDQLQQN
                     QKSQNSDYLLTITNDAWFGSSIGPWQHFQMARMRALELGKPLLRAANTGITAIVDANG
                     KVIEQLPQFTADALTATIVPTKGDTPFKQLGHWLIYSFSLFCVIASLLLRRK"
     gene            complement(10405..11304)
                     /gene="corC"
                     /locus_tag="PXE26_001252"
     CDS             complement(10405..11304)
                     /gene="corC"
                     /locus_tag="PXE26_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249295.1"
                     /note="CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter
                     (CNNM) family, and was characterized as belonging to a set
                     of three proteins, at least one of which must be present
                     for CorA to function; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family magnesium/cobalt transport protein
                     CorC"
                     /protein_id="HDL5593840.1"
                     /translation="MSDEQQSVNTTEKSEKKSILHSLFSGLFQNEPKNREDLVEVIRD
                     SVENELIDSDTKEMIEGVMEISELRVRDIMIPRAQIVFIDANEPLDVCIDLIIESAHS
                     RFPVIRGEKDTIEGILHSKDLLKYLRSDSEPFNLQQVLRPAVIVPESKRLDRMLKEFR
                     SERFHMAVVVDEFGAVSGLVTIEDILEQIVGDIEDEFDEEEVKPIRQLSRHTYAVLPL
                     TDIKKFNEFFATDFNDEEVDTIGGLVMQAFGYFPKRDEQIELNGIDFKVTSANSRQLI
                     QLRVTLSDEQLEKMEKTSPNEEE"
     gene            11442..12050
                     /locus_tag="PXE26_001253"
     CDS             11442..12050
                     /locus_tag="PXE26_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2057 family protein"
                     /protein_id="HDL5593841.1"
                     /translation="MKLTKIALSLTALVVSSMSVAGTLSTSSMVDILAFDGQRVKSGT
                     TSVQMSENKTHQVVVEVGGTVEGDFFTSDQIILTFQGSAENAKLETPRLNSKLDLRKF
                     QENQTVAIKTDSGKVISHKQDFLKGEGFLAKTRVEDNLTKYNLAKKTASVEQFATAPL
                     EAKGQIVVDTNKVSQEELQLLFRKADKDTQKRFLEWAKKNIK"
     gene            complement(12131..12514)
                     /locus_tag="PXE26_001254"
     CDS             complement(12131..12514)
                     /locus_tag="PXE26_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593842.1"
                     /translation="MKTLKLGCIFSLALMLSSCTLTPEQQAERKAKQIRAEQDLQVQL
                     AKQCDVETAELMYQQFNPPLSQTEQEEKAFKKRYAEKVNAPMFQACYKLAWQNYKAQV
                     ELEEIRWNYDRDYMYRGWRYCYYCW"
     gene            complement(12544..13113)
                     /locus_tag="PXE26_001255"
     CDS             complement(12544..13113)
                     /locus_tag="PXE26_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HDL5593843.1"
                     /translation="MNETTINDFSLLCRLFGNLFYRHPTDPILAGTFNWLAQGGLRQV
                     WALNTDSQSENALTLLQKNANPTQLAASYQALFAENGAISPTISAYGLSVNNFVAFRQ
                     ERAMPELENADHIGLLFLTASWIEDNLDSALAQKILFEQFLLPCAGKFLGKIEAFDNG
                     FYKALAQLSRDALSAMADELEESELEAVE"
     gene            13172..14017
                     /gene="nfo"
                     /locus_tag="PXE26_001256"
     CDS             13172..14017
                     /gene="nfo"
                     /locus_tag="PXE26_001256"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HDL5593844.1"
                     /translation="MKYIGAHVSASGGVENAVLRSVEIGANAFALFTKNQRQWQAPAL
                     KAETIEKFKRFCKVHHFSAEQILPHDSYLINLGNPEAEALEKSRVAFIDEMSRANQLG
                     LKLLNFHPGAHLKQISEQDCLARIAESINIAVEKVPNVIAVIENTAGQGSNLGWHFDH
                     LATIIEQVEDKSRVGVCLDTCHLFSAGYDISSYEKSEAVFNDFNQTVGFHYLRGMHLN
                     GSKTPLGSRVDRHHTLREGTIGTEVFAFIMQNMHFNHIPMILETISPEIWADEIKFLR
                     TLELK"
     gene            14145..14717
                     /locus_tag="PXE26_001257"
     CDS             14145..14717
                     /locus_tag="PXE26_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL5593845.1"
                     /translation="MKKNLFATTFKPVFIASILSVFGGYSSIAVASLSSKPATPNQII
                     ASKAERLAKSSSVFTNRANLPTSSAHTANYSGRINSVYHNWVGTRYRLGGTTKAGIDC
                     SAFVREVMGKAFSKDMPRSTAEQRHVGHSISKSDLRPGDLVFFRKNNHVGVYIGNGKF
                     VHASSSRGVTTSSLSESYWSRNYTQSRRVI"
     gene            complement(14784..15242)
                     /locus_tag="PXE26_001258"
     CDS             complement(14784..15242)
                     /locus_tag="PXE26_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5593846.1"
                     /translation="MASIRQISDQTAAYQPIPLYRDFNSSRSVKLDLNSLCIKRPRDT
                     FFIHVKNPNLIAWGIELDDLLIVEQTNQYLVNDLLVLEKDGEYKFYQFFNEIQNGEGI
                     AEKILFSLDVSESNLRITDWAEVKIAGVITNVVHQMRTRGAFTQAKQRVA"
     gene            complement(15416..>15797)
                     /gene="grcA"
                     /locus_tag="PXE26_001259"
     CDS             complement(15416..>15797)
                     /gene="grcA"
                     /locus_tag="PXE26_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="autonomous glycyl radical cofactor GrcA"
                     /protein_id="HDL5593847.1"
                     /translation="IKGVQITESSNSNLLNSFWLLDEAKNEARCLAAKAGFEEDQVVA
                     ISELGDIAYREVPVNVAPTIKVEGGQHLNVNVLRRETLEDAIQNPEKYPQLTIRVSGY
                     AVRFNSLTPEQQRDVITRTFTESL"
BASE COUNT         4692 a         3087 c         3337 g         4681 t
ORIGIN      
        1 acgttaagaa aagcaagatt ggtgataggt aaagccattt tagatagtaa aaatactgat
       61 ctgatattat cggaaattcc caataaaatt ctatttcttc gtcacgatgg taaaattggt
      121 gattatgtcg ttagttcctt tgtcttccgt gaaataaaaa aacagtctcc ccaaacgcaa
      181 ataggcgtgg tttgctcaca gaaaaaccga tatttatttg agaataatcc ttatattgat
      241 aagctctatt tggttaagac aaaaagtatt cctgattata ttcgtggtgg caaacaactt
      301 gcaaaagagc agtatgatgt tgtaatcgat ccgactgtta ctttacggaa tcgtgatctc
      361 ttatttttac gcactatatc agccaaacat tatgtaggtt atcagaaaca aaaatatcga
      421 ttatttgatc taaatgtaga ggatagaaaa cagcattttt cagagattta tcaagatgcg
      481 ttagctttaa tcgggtttga aaatatagaa actcagtatg atgtgccact aaatgccaca
      541 agcaaccaat ccataaagca ttatttatat gaaaaccaaa ttagaaatta tattgcgtta
      601 aatctttttg gtgcaggttc ggcaagacgt tttagtgagc agaaaattaa tgaactgctg
      661 agttgcttaa aacagcatag tgataaaccg atagtcttac ttacttttcc tgaagtaacg
      721 gcaaaattgt gttcctttac taagaagtat aaaaatatat ttgtctatga gaaaaccaaa
      781 agcgtttttg attcaataga actgattcgt tttgcggact tattaatttc acctgatact
      841 gcaaccgtgc atattgcctc aggcttgagt aaaaagataa ttgcttttta cagtagcgat
      901 gaacagaatt ttatacattg gcatccgaat aatcaggctg aaacccatat tctccgtttt
      961 agaaaaagcg tgaatgattt agattttgct gcaataaaac cggagtggct aaaataatat
     1021 ggacttccaa agccttaaac ttttcctaga tatagcccaa agccgtagtt ttattcgcag
     1081 tgcggagaag aattatatga cggcttccac acttacccgc catattcagc gtatagagga
     1141 ggagctcggg cagccgttgt ttctgcgtga taatcgacaa gtgcgtttaa ctgaagcagg
     1201 ggaaaggttt ttggcgtttg ctcaacaagg ttgggcagag tggcagcagt tgcaaaacca
     1261 gttgtcgcct gctcaaggtg atttagaagg agagttgaaa gtgttctgct cggtaacggc
     1321 ttcttacagc catttaccgc cgattttggg aaagtttcgc caaaaatatc cgaaagtgga
     1381 tattaaactg agtaccggtg atccggcttt ggcattggaa caggttcagt cattggctgc
     1441 agatatttcg gttgcgggta agccggaatt tctgccgaat aatattgtgt ttcactatat
     1501 tgatgatatt caactttcga ttattgcccc tcgtgtggcg agccaagcca ctcaatttct
     1561 gcaacagtcg ccgatagatt ggaaaaatat cccctttatt ttgccggtga acggacctgt
     1621 acgaaaacgg attgaccgtt ggtttaaaga gcaaaaaatc aaagacccga ttatttatgc
     1681 taccgtctcc ggacacgaag cgattgtgcc gatggttgca ctaggctttg gggtcgcact
     1741 gctaccggat attgtgatta agcatagccc aatgaataat caagtttctt atgtgaattt
     1801 accctcgccg atcactccgt ttgagctggg aatttgcgtt cagcaaaaac gcttgcaaga
     1861 gccgatcatc aacgcatttt ggcaattatt gtctgataat tcagcataac aagcggttag
     1921 attttgctaa atttttgcaa aaaatagagc aaaaccgacc gcttgtagat aaaactttca
     1981 gataaaaaat aaggtgcgtg attgtgatct gcgcacctta tgttgtttta gattattgca
     2041 ctttattgca ctgtggcttt agctcgcgat tttttcacct tgatctcggc ttttgacaag
     2101 atttcaatcc ccattggcgg gttttctagt gccagagcta gtacctcgtc aatggtttct
     2161 actgcgtgaa tgtccaacgc tgcttttgca ttttccggaa tttcctctaa gtctttttca
     2221 ttttctttcg gaataatcac cgtcgtaata ccaccacgat gggctgccag taatttctct
     2281 tttaagccgc cgattggcaa tactttgcca cgcaagctga tttcaccggt catcgctact
     2341 tctttacgca cagggttacc tgttaggctg gaaattaatg cagtacacat tgcaatccct
     2401 gcactcggac catctttcgg tgttgcaccg tccggcacgt gaacgtgaat atcccgtttt
     2461 tcgtggaagt cttcagcaat gcctaatttt tctgcacgag agcgtacaac caccattgcc
     2521 gcttgaatag actctttcat tacatcgcct aatgaaccgg tgtaagagaa tttgccttta
     2581 cctgcaacag aagcggtttc aatggttaat aaatcaccgc caacttctgt ccacgctaaa
     2641 ccggtcactt cgccaatgcg gttttggcta tccattttgc cgtagtcaaa acgttttacg
     2701 cctaagtatt cttcgatatt tttctcagaa actgtaatgg attttaattt cttatccaat
     2761 actaaagctt tcacggcttt acggcagatt ttcgcaattt cacgctcaag gctacgcacg
     2821 cctgcttcac gggtgtagta gcggataata cttaaaattg cactgtcttc aatggtcagc
     2881 tcaccctctt ttagtccgtt attttcttgc tgtttagcca gtaaatgacc acgagcaatg
     2941 tgcattttct catcttcggt atagcctgaa agacgaatca cttccatacg gtcgagcaat
     3001 gctggcggaa tgttcattga gtttgaggtt gccacaaaca ttacatcgga taaatcgtaa
     3061 tccacctcta aataatggtc gttaaaggct ttattttgct caggatctaa cacttcaagc
     3121 agagcagaag ccgggtcgcc acgcatatct tgagccattt tgtcgatttc atctaacaag
     3181 aacagcggat tacgcacgcc gactttcgcc attttcatca ttaggctacc cggcattgag
     3241 ccgatgtaag tacggcgatg cccacggatt tccgcttcat cacgcacgcc acctaacgcc
     3301 atacgcacat atttacgccc tgtggcattg gcaatagatt gccctaatga ggttttacca
     3361 acccccggcg gaccaactaa gcacaaaatc ggacctttta atttatttag acgactttgc
     3421 actgctaagt attctacaat ccgctctttc actcgttcta agccgtagtg gtctttatcc
     3481 aaaatctctt gagcttgggc taaatctttt ttgaccgctg attttttatg ccacggcatt
     3541 tgtaaaatcc agtcaatata accacgcaca acggtagctt cggaagagct ttgcggcatt
     3601 gctttgagct ttttgaactc cgtattcagc ttgtctttta cctcggtcgg taattttgca
     3661 gcgtcaattt tctctttaag cttatctaac tcgctttgtt caacgtcatc gccattacct
     3721 aactcttttt gaatcgcttt aatttgctcg ttgaggtagt aatcacgttg gtttttttcc
     3781 atttgctgtt taacacgatt acgaatccga gtttcggttt caagcgtatc catctcagtt
     3841 gccatcgcaa ttaacaaggc ttcaaaacgg gcaatcagat ttggttgctc caataattcc
     3901 tgttttttct tcaccggagc aattaagtta gaggcaatgg tatccgccaa gcggtcttcc
     3961 aacgtgattt tttgcagttt agcaataatt tccgccggaa ttttcttgtt atttttaacg
     4021 taattttcaa attcggttaa agtggtttta gcaatcgctt ttaactcttc gttttcgtca
     4081 tcatattccg aatatattgg ctgaattgcc gcccagaagc cgttttcatc atcgtgaatt
     4141 tgctcgattt tggcacgggt ttgtccttct accagcactt taactgtgcc gtccggcagg
     4201 tttaacattt gaataatgtt ggcaattaca cctacgccat acatatcttc tgcattcggc
     4261 tcttctttat ttggatcttg ctgagtgact aaaaacagtt gtttattgga atccatcgcc
     4321 gagcgtaggg cttgaattga tttttcacgt cctacaaata acggcataac catataagga
     4381 aaaaccacca catcacgcaa tgggagtagt ggtaattcaa tcgctttctt ttttcttggt
     4441 gccataaatt tgctctctct atcaaaatat aatcccccat tatgagggcg aatttgggaa
     4501 aaacaaggga aaatttgatt tatcttaaaa aaactcgaat agtcaaaaca gtagatgttg
     4561 gcgatttaat caattgttaa aatcagggta attagcttaa tttcccgctt gacatcaaat
     4621 cgtaatgcga gcaaaatccc ctgcatattt taatcttcag ggcagggtga aattcccgat
     4681 cggcggtaaa gtccgcgagc cgagcaatcg gcaggatttg gtgaaattcc aaaaccgaca
     4741 gtatagtctg gatgaaagaa gagtcaaaaa ccgcaaaaaa taccgcacaa gcggtcattt
     4801 tttgtgtctt ttttgcaagc cttgagtcgt gagatttcaa ggcttcattg ttttgcaggc
     4861 ggcgtttgca aattttttac taaaaacgac cgcttgtatt gcaataatcc tttcattacg
     4921 ccctcaattt atcaaaatgt atatgacaga tgttcaatat atggcttatg ccatcaccct
     4981 tgccgaaaaa gcacggggtt ggacaagccc taatccgcta gttggctgtg tgatcgtgaa
     5041 aaacggcaac attatcgccg aagggtatca ccaaaaagcc ggtagttggc acgctgaacg
     5101 caatgcgatt ttaaactgcg aggaagatct gacgggggca accgcttatg taaccttaga
     5161 gccttgttgc caccacgggc gaaccccgcc ttgttccgaa ctgctgattg aacgtgggat
     5221 caaaaaagtg tttatcggct ctcgagatcc gaacccactt gtttctggca aaggagcggc
     5281 acagcttaga gccgccggca ttgaggttgt ggaagacttt atgcgaacgg agtgcgatgc
     5341 gctgaacccg attttcttcc attacattca aaccaaacgc ccttatgtgt tgctgaaata
     5401 tgggatgacg gcagatggta aaattgcgac ttatacgggg aattcgaaat ggatcaccgg
     5461 cgaggctgcc cgagctaatg tacagaaaag ccgccacgaa tatagtgcga ttatggtcgg
     5521 ggtggaaacg gtgcttgccg atgacccaat gctcaacagc cgaatggaaa atgctaaaca
     5581 gccggtgcgg attgtatgtg acagccaact gcgtacccca ttggatagcc aactagtcca
     5641 aactgcacgc caatatcgca ccattattgc tacgctcaat aatgatgcaa aaaagcaggc
     5701 agaatatacc gcttgcggtg ttgaaatttt agtgacaggc gaacgtgaca agcgggtgga
     5761 tttagccgat cttttgcaaa agctgggcga actcgggatc gacagcttat tgattgaagg
     5821 tggttcgcaa ctcaatttca gcgtgctgga acaggggtta gtcaatcgag tacattgcta
     5881 tattgccccg aaactgattg gcggcaaagc ggcaaaaacc ccgattggtg gcaaggggat
     5941 tggcgagtta gcacaagcgg ttaaattacg tctaaaatcc accgaattgc tcggagaaga
     6001 tattttgttg gattatgaag tggacttgct tcgtaattaa attgaaattt ccttactctc
     6061 gcccgtttac gggagagaga cagcataaaa tttcgttcag aaattttatg cagagagagg
     6121 ggaaaatgag tgtaatcttc cctctccctc cgaaaatcct acggattttc tcttccctct
     6181 cccgtaaacg ggagagggga atagtaagat aagcagttct cagactaaat tggaagtaaa
     6241 tcggagaaaa atttaaatgt tcacaggcat tatcgaagaa gttggccaga tagcccaaat
     6301 taagaaacaa ggcgagtttg tggtggtaac ggttaaagca aaaaagattc tgaccgatgt
     6361 acatttaggg gatagcattg cggtaaatgg cgtgtgttta accgtgactt catttacgca
     6421 ggagcaattt actgctgatg ttatgtcaga aaccttaaaa cgtacatcac ttggcgaatt
     6481 aagtatcaac agctcggtta atcttgagcg ggcaatggcg gcaaacgggc gttttggtgg
     6541 gcatattgtg tcaggtcata ttgatggcac gggtgtggtt gcagagatta caccagcaga
     6601 taattcaact tggtatcgca ttaaagccga acctaagtta atgcgttaca tcattgaaaa
     6661 aggctcaatt actattgatg gcattagttt aacggtggtg gatgttgatg cggaatcttt
     6721 ccgggtatcg attattccgc ataccattaa ggaaaccgac ctcggtacga aaaaaatcgg
     6781 tagtttggtg aatttagaaa atgacattgt cggcaaatat atcgaacagt ttttattgaa
     6841 aaaagagcct gaaaatccgc aaagtaaaat tactgcggac tttcttaaaa atgcagggtt
     6901 ttaaccaaat aaaggacaaa taatgtttaa gttttcaacg gtagaagaag caattcaagc
     6961 aattgcacaa gggaaaatta ttttagtcag cgatgatgcc gaccgtgaaa atgaagggga
     7021 cttcatttgt gcagcggaat ttgcgacacc ggaaaatatc aactttatgg cgaaatatgg
     7081 taaagggttg atttgtacgc cgatttcgac agaaattgcc aaaaaattaa attttcaccc
     7141 gatggtgcta gagaacgaag ataatcatca aaccgcattt accgtttctg ttgaccatat
     7201 tcaaaccggc accggtattt ccgcttttga gcgttcatta acttgcctga aaatgcttga
     7261 tgaaaatgct aagccggaag attttagacg tccggggcat gttttcccat tagtggcaaa
     7321 agacggaggc gtattagtgc gtaacggtca taccgaagca actgtggatt tagctcgttt
     7381 ggcgggcttg aaaccggcag ggctttgctg tgaaattatg gcagaagacg gcacgatgat
     7441 gcagatgccg gaattacagg catttgcaca agcacacaat atgccgttta ttactattca
     7501 gcagttacaa gagtatcgta gaaaacacga cagcttggtg aatgtggttt cggtggtaaa
     7561 aatgccgacc aaatacggtg agttcaaagc acacagtttc gttgaaacta tttcaggcaa
     7621 agaacacgtc gctttagtta aaggtgatat tggtgatggc gaaaatgtat tatgccgtat
     7681 ccattccgaa tgtttaaccg gcgatgcctt tggctcacaa cgttgcgatt gtggtcagca
     7741 gttcgcagcg gcaatgaacc aagtggagca agagggcaga ggcgtggtgc tttatttacg
     7801 ccaagaagga cgtggcatcg gtttaattaa taaactgcgt gcttacgaat tgcaagatag
     7861 aggaatggac acggttgaag ccaacctggc attaggtttc aaagatgatg agcgtgaata
     7921 ttatatcgcc gctcaaatgt ttgaaaaatt aggcgtaaaa tcgattcgtt tgttaaccaa
     7981 taatccggca aaaattgaag gactcattga gcaaggttta aacgtagtgg ctcgtgagcc
     8041 gattatggtt gagccaaacg aacacgattt ggaatacctt aaagttaaac agcacaaaat
     8101 gcgacatatg tttaatttct aatccaatac tctctcccct tgtgggagag agacagaaaa
     8161 atacttcgtt cagaagtatt tttcagagag agggtatatt ttttagaaaa agtttgcaat
     8221 ttcccctctc cctgattttt cttctgaacg aagaaaaatc tatccctctc ccacaagggg
     8281 agagggttat tgagtatcaa atttatttta aagaaggaaa acaaacaatg gcaacatttc
     8341 aaggaaacta catcgcaact ggtttaaaat tcggtattgt ggcaactaac tggcacaaga
     8401 tttttatcga tcaactgtta aacggtgcaa ccgataaatt attgcgtcac ggcgtagaag
     8461 aaaaaaatat cgacaccgta tgggtgccgg gtgcattaga aatctcaatt gcagcgaaaa
     8521 aaatggcaca aagcggtcgt tatgatgcga ttatctgctt aggtgcggtc gtgcgtggag
     8581 caaccagcca ctatgatgtg gtagtgaacg agtcagcaaa aggcatcagc tcttctgctt
     8641 tagaaaccgg cgtgccgatt attaacggta ttttaacggt ggaaaattta gagcaagcga
     8701 ttgagcgttc aggcactaaa gccggtaata aaggcgaaga gtgtgcaatg gtagcgattg
     8761 aaatggcgaa cctattaaaa gccttagcgt aatcagcgat aaaatcccct tagacccaag
     8821 agcctaaggg gattttttta ttttctgcgt agtaacaggc tggcaatgac acaaaatagg
     8881 ctgaaactgt aaattaacca gtgacctaat tgtttaaacg gcgtatcgcc tttggttggc
     8941 acaatggtgg cagttagtgc atcagcagta aattgcggta gttgttcaat tacttttccg
     9001 ttggcatcaa caatggcggt aataccggta ttcgcagctc gaagcaatgg tttgccaagt
     9061 tctaacgctc gcattcttgc catttggaaa tgttgccaag gcccgatgga agaaccaaac
     9121 cacgcatcat tggtgatagt taataaataa tctgaatttt ggcttttttg gttttgttgt
     9181 aactgatcac caaaaataat ttcatagcaa atcgccatat taaatcggtt gtttttcgcc
     9241 aagaatgatg gttgaacgaa actgccttgt gaaagattaa ttggtagaat aaacacttcc
     9301 cgcatccaat ccagcaccga gccaaacggc acatattcgc caaacggcac aaggtgatgt
     9361 ttgttgtagc gagggttgct gtgcagggca tattccctct ctttttcgcc taatagcacg
     9421 ctactgttaa acagttcctc ttgctcattt tgatagagtg tgccgataat aatttcactt
     9481 ccgtgttggc gagctaagtg atcgagcgag ccaagcagcg ggctgatttg attttcaagt
     9541 gccggaatgg cggattcagg caaaataatc agttcactgt tacctaatag gggcagaatg
     9601 agctgttcgt aggttcgtac gctgtggttg aaatgttgcg gatcccactt cattttttgc
     9661 tcaatattcc cttgtactaa actcactaca agcggttgtt tttctgtatc aatttgcaca
     9721 aattggagaa agcgagtggc aaaacttaag ccaaaaatga ccgctagtac catcaatgat
     9781 ggcacagttt tgttctcttg ctgaataatt ttcactagat agctacttgc aactattacc
     9841 aagaaagtca aaccttcaac gcccaaaatc ggcgcaatac cagcaaaggg gctgtctatt
     9901 aagctatagc cgaattgtag ccacggaaaa ccggtaaata ccacgcctcg taaatattcg
     9961 gtaaaggtaa aaatcgcagc caatgcaaac ggattattca gtttgagcct gtgtgaaact
    10021 acactaaaca gcagattata aatagcgaga tagcacgcca acaggaatac tgctatgtag
    10081 cttactatgg taggaacacc accaaattgg gtcatactca cagaaaccca gtttacaccg
    10141 gtgcagaagt agccgataga ccaagcaaag gttgcccata atgcggtttt tctgtttgcc
    10201 agagtggctg accaaaccaa gccggctgcg gaagcaaagg caagaatcca aatatcaaaa
    10261 ggcgaatagg cgaaagtgcc gattgcaccc agtatgattg caaggagaca agcggttaaa
    10321 aaaggcggat tttttgcaaa attcataata actcactaaa taaatgaggc acgccgaaac
    10381 gtgccttgat tgaaactcac tatattattc ttcttcgtta ggagaggttt tttccatttt
    10441 ctctaactgt tcatcggaaa gtgtgactcg tagctgaatc aattggcggc tattagctga
    10501 ggtgacttta aaatcaattc cgtttaactc aatttgctca tctcgtttcg ggaaataacc
    10561 gaaagcctgc atcactaaac caccaatggt atccacctct tcgtcattaa agtcggtagc
    10621 aaaaaattca ttgaattttt tgatgtcggt gagcggtaat accgcataag tatgtcttga
    10681 aagctggcga attggtttga cctcttcttc atcaaactca tcttcaatat cacccacaat
    10741 ttgttcaaga atgtcttcaa tggtgactaa gcctgaaacc gcaccaaatt catcaaccac
    10801 tactgccata tggaagcgtt ctgaacggaa ctcttttagc attcggtcta ggcgtttgct
    10861 ttccggtaca ataaccgcag ggcgtaatac ctgttgcaga ttaaagggtt cagagtcaga
    10921 acgtaaatat ttcaataaat ctttagagtg aagaatacct tcgatagtat ctttctcacc
    10981 ccgaatcacc ggaaaacgag agtgtgcgga ttcaataatt aaatcaatac agacatctaa
    11041 aggttcattg gcatcaataa acacaatttg cgcacgggga atcataatat cccgcactcg
    11101 taattccgag atttccatta ctccttcgat catctctttg gtgtcgctgt cgatcaattc
    11161 attttcaaca gagtctcgaa tcacttcgac tagatcttca cggtttttag gctcgttttg
    11221 aaaaagcccg ctaaatagag agtgtaaaat cgattttttt tctgattttt cggtggtgtt
    11281 tacactttgc tgttcatcac tcatagtttg ttccacttaa ataaagtacg cttataataa
    11341 gcaaattcag tcacaaagca aataaaacat tgctattttc actcaaatta gcataggata
    11401 agcaaaaatc tttttatttc ttcatatttt aggagtttga aatgaaatta accaaaatag
    11461 cattaagttt aacagcctta gttgtcagtt cgatgagtgt ggccgggacg ttaagtacat
    11521 catcaatggt ggacatttta gcctttgacg ggcaacgtgt taaatccggc acgacttcgg
    11581 ttcaaatgag tgagaataaa acgcatcaag tggtagtgga agtcggtggg acagttgaag
    11641 gggatttttt cacctctgat caaatcattt tgactttcca aggcagtgcg gaaaatgcaa
    11701 aattagaaac gccaagatta aattcaaagt tagatcttcg taaattccaa gagaatcaga
    11761 ctgtggcaat taaaaccgat tcaggtaagg ttatttcaca taaacaagat ttcttaaaag
    11821 gggaaggttt ccttgcgaaa acaagagttg aagataattt aacgaaatat aacttagcga
    11881 aaaaaacagc ttcagttgaa cagtttgcga cggcacctct tgaagcaaaa ggacaaattg
    11941 tggtggatac aaataaagtt tcacaagaag aattacagct tttatttaga aaggcagata
    12001 aagacaccca aaaacgtttc ttagaatggg cgaagaaaaa tataaaataa acctatatca
    12061 attaataagc ggtcatttct cgccaatttt ttgcaaggtg ttaaaaaaat gaccgctcat
    12121 acaatgagat ttaccagcaa taatagcagt aacgccagcc tctatacata tagtctctat
    12181 cgtaattcca acgaatttct tcaagttcta cttgtgcctt gtaattttgc caagcaagct
    12241 tataacaggc ttggaacatt ggggcattga ctttttcggc atagcgtttc ttaaatgctt
    12301 tctcttcttg ttcggtttgg ctaagcggcg gattaaattg ttggtacatt aactccgccg
    12361 tttctacatc acattgtttg gcgagctgaa cttgcaaatc ttgttctgcc cgaatttgct
    12421 tcgctttacg ttcagcttgt tgctctggag ttaaagtaca gctacttaac ataagtgcga
    12481 gtgaaaaaat gcagcctaat ttgagtgttt tcattgctga atcctctagt tgaaattggt
    12541 gatttattct accgcttcta actcactttc ttcaagttca tcagccatag cactaagggc
    12601 atcacggcta agttgtgcga gggctttata aaaaccattg tcgaaagctt ctatttttcc
    12661 taagaatttg cctgcacaag gtagtaaaaa ttgttcgaat aatatttttt gagctaaggc
    12721 agaatcgaga ttatcttcga tccaagatgc cgtgagaaat agtaacccaa tgtgatcggc
    12781 attttctaat tcaggcattg cccgctcttg tctaaaagct acaaaattat taactgataa
    12841 tccataggct gaaattgttg gagaaatagc cccattttca gcaaaaagcg cttgatagct
    12901 tgctgctaat tgcgtagggt tagcattctt ttgtaagaga gtcagcgcat tttcactttg
    12961 gctatccgta tttaatgccc agacttggcg taatcctcct tgggcaagcc agttaaatgt
    13021 gccagctaaa atagggtcgg tagggtgacg ataaaataag ttgccaaaca aacggcaaag
    13081 cagggaaaaa tcgttaatgg tagtttcgtt cataatttga aatagataga aaaaagaatt
    13141 gttagtatag cagaacacaa gagaggactg aatgaaatat ataggcgcac acgttagtgc
    13201 ttcaggtggg gtggaaaatg cagttttgcg ttccgtagaa attggtgcta atgcatttgc
    13261 gttatttact aagaatcaac gtcaatggca ggcaccggca ttaaaagccg aaactatcga
    13321 aaaatttaag cgtttttgta aagtgcatca tttttcagca gagcaaatct taccacacga
    13381 tagctatttg attaatttag gaaatccgga agcggaggca ttggagaaat ctcgtgtagc
    13441 atttattgat gagatgtctc gagcaaatca attaggttta aaattgttga attttcaccc
    13501 gggggcgcat ttaaagcaaa tttccgagca agattgtttg gctagaattg cagaatcgat
    13561 caatattgca gttgaaaaag taccgaatgt tattgccgtg attgaaaata cggcaggaca
    13621 gggttctaat ttaggttggc atttcgatca tttggcaact attattgagc aagttgagga
    13681 taaaagccga gtgggggtgt gtttagatac ttgtcactta ttttctgccg gctatgatat
    13741 tagttcttat gaaaagagcg aggcagtatt taatgatttt aaccaaacgg ttggttttca
    13801 ttatttaagg ggaatgcact taaatggttc aaaaacacca ttaggcagca gagtggatcg
    13861 tcatcatacc ttaagagaag gcacaatagg aaccgaagtg tttgcattta ttatgcaaaa
    13921 tatgcatttt aaccatattc ctatgatttt agagacaatt tcgcctgaaa tttgggcaga
    13981 tgaaataaaa tttctacgca cattggaact aaaataggtt atactggtct gagtagtggg
    14041 tctagcagag tctagacctt attttgttat cttttttaat cttttagaag atttagttaa
    14101 ggaatttacc gctgtaattg ttctggcgag acgagacata aattatgaaa aaaaatcttt
    14161 ttgcaacaac cttcaagccc gtatttattg cttctatttt gtctgttttt ggagggtatt
    14221 cttccattgc tgtagcaagt ttaagttcta aaccggccac accaaatcaa atcattgcaa
    14281 gtaaagcaga aagattagct aagtcttctt cagtatttac caatcgagca aatcttccaa
    14341 cttcttccgc tcatacagcg aattatagtg gtcgtattaa tagtgtttat cataattggg
    14401 tagggacacg ctatcgttta ggcggcacaa caaaagcagg aattgattgt tccgcctttg
    14461 tgcgtgaagt aatgggcaaa gcatttagta aagatatgcc tcgttcaact gcagaacaac
    14521 gccatgtcgg gcattccatt tcaaaatctg atttacgccc aggtgattta gtctttttcc
    14581 gtaagaataa ccatgtaggg gtttatattg gtaatggtaa atttgtacac gctagttcaa
    14641 gtagaggggt aaccaccagc tcattgtcag aaagctactg gtcaagaaac tacacacaat
    14701 ctcgccgtgt aatttaataa attacaattc caagatgaaa agaacactca cttttgcgag
    14761 tgttcttttt taattaaaaa agtttatgct acgcgttgct tagcttgtgt aaatgctcca
    14821 cgagtacgca tttgatgaac cacattagta attacacctg ctatttttac ttcagcccaa
    14881 tcagtaattc taagatttga ttcgctcaca tctaatgaaa ataaaatttt ttcagcaata
    14941 ccttccccat tctgaatttc attaaagaat tgatagaatt tatattcccc atctttttca
    15001 agcaccaata gatcattaac taaatattgg ttggtctgtt ctacaatcaa taaatcgtct
    15061 agttcaattc cccacgcgat taaatttggg tttttcacgt ggataaaaaa agtgtctctt
    15121 gggcgtttga tacaaagtga gttaagatcg agctttacag agcggctgct attgaaatcc
    15181 cgataaagcg gaatcggctg ataagctgcc gtttgatctg aaatttgtct aattgaagcc
    15241 atagtaaaat cctctatctg tttttttata cagggtattt tactggctaa aataccagtg
    15301 tcaaccatta ttttggaatt ttttgtaaat ttaaccagtg ttttgaccgc ttgttatcct
    15361 ttaaaaagca ataaaaaagc acccataggg tgcttcttat gcttaaaagc tgttattata
    15421 ggctttcagt gaatgtacga gtaataacat cgcgttgttg ctcaggggtt aatgagttga
    15481 aacgaactgc ataacctgaa acacggatcg ttaattgagg atatttctca gggttttgaa
    15541 tcgcatcttc taatgtttca cggcgtaaaa cgtttacgtt taagtgctga ccaccttcaa
    15601 ctttaatcgt tggtgcaaca ttaacgggta cttcacggta tgcgatatca cctaattcgc
    15661 tgatagcaac aacttgatct tcttcaaatc ctgcttttgc agctaaacaa cgagcttcat
    15721 ttttagcttc gtctaataac cagaaagagt ttaataagtt gctgtttgat gattctgtga
    15781 tttgtacacc tttaatc
//
LOCUS       DANLZD010000056        15753 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.056, whole genome shotgun sequence.
ACCESSION   DANLZD010000056 DANLZD010000000
VERSION     DANLZD010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15753
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.056"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..1374
                     /locus_tag="PXE26_001260"
     CDS             <1..1374
                     /locus_tag="PXE26_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HDL5593848.1"
                     /translation="LSNEVFISIIVLLILSLLRINVVIALIISALTCGLIGNLGVEGA
                     GFTEALEKTIKSFTGGLGGGAETAMNYAVLGAFAVALSKSGVTDLLAYKVIKSFGHSP
                     SGRSVTWFKYIVLFVLVAFAMSSQNLIPIHIAFIPILIPPLLSVMNKLQIDRRAVACA
                     LTFGLTATYMLIPAGFGQIFIESILVKNINQAGEPFQLVTTTAEMTKAMLIPVSGMIL
                     GLLFAFFVSYRKPRVYIENMPEPTADDIEARVANVKPFHIGISIVAIIATCSVQLATN
                     STIIGGLVGLVIFALGGVFRLKESNDVFQAGLRLMAMIGFVMIAASGFAGVVNSTGGV
                     PALVESLRDVISSKEMAALLMLVVGLFITMGIGSSFSTVPIITSIYVPLCISFGFSPL
                     ATMAIVGVAAALGDAGSPASDSTLGPTSGLNADGKHDHIWDSVVPTFIHFNIPLLVFG
                     WIAAMTL"
     gene            1472..2275
                     /gene="xthA"
                     /locus_tag="PXE26_001261"
     CDS             1472..2275
                     /gene="xthA"
                     /locus_tag="PXE26_001261"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HDL5593849.1"
                     /translation="MKFISFNINGLRARPHQLEAIIEKHQPDVLGLQEIKVADEDFPY
                     DLVNHLGYHVFHHGQKGHYGVALLTKKEPIAVRKGFPTDVLDAQKRMIMADIETDFGV
                     LTVLNGYFPQGENRSHETKFPAKQKFYADLQNYLESELKPENPIIIMGDMNISPTDLD
                     IGIGEPNRKRWLRDGKCSFLPEEREWLDRLYSYGLVDTFRAGNPDVNDKFSWFDYRSK
                     GFDDNRGLRIDLILASKSLAERCVETGIDLDIRAMEKPSDHSPVWATFK"
     gene            2429..3013
                     /gene="lptC"
                     /locus_tag="PXE26_001262"
     CDS             2429..3013
                     /gene="lptC"
                     /locus_tag="PXE26_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HDL5593850.1"
                     /translation="MNKRLTVILLIIVAVLGGWYYSLQEKENTGLDQLIKKEGQPEYV
                     GNKMSTTVYDLKGNPQYFAQATEIKRYESTERTEFFKPFIELFAKESTQKQWKVSADY
                     AEITKEKMLNLKGNIKLVALDPASRLQQITTDTLTVDLNTQDIFTESTVKSIGSGFTT
                     TGVGLKGNLKQQVATLQKDVKSYIEPTIIQETKE"
     gene            3037..3543
                     /gene="lptA"
                     /locus_tag="PXE26_001263"
     CDS             3037..3543
                     /gene="lptA"
                     /locus_tag="PXE26_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HDL5593851.1"
                     /translation="MKLMFKSILVSVLLGSSFSAYALKGDTDQPINIDSGSQSLDMTN
                     NIVTFSDNVVITQGSIKVTAANVKITRQEGKKETIDATGSPVTFQQTLDNGKPVNGKG
                     NSVHYDLNSEFLTLIGNAELKQQGSFIKANKITYDVKKQQLKATSGGKTRVKTVLIPN
                     ELQDNKKK"
     gene            3555..4280
                     /gene="lptB"
                     /locus_tag="PXE26_001264"
     CDS             3555..4280
                     /gene="lptB"
                     /locus_tag="PXE26_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005727816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HDL5593852.1"
                     /translation="MSVLYAEHLAKSYKQRQVVKDVSLNVKSGEIVGLLGPNGAGKTT
                     TFYMVVGLVRHDHGTIRIDDQDISTLPMHDRAKQGIGYLPQEASIFRRLSVYDNLMSV
                     LQVRKNINDKQRKERAEELITEFHIEHIRNSLGQSLSGGERRRVEIARALAANPKFIL
                     LDEPFAGVDPISVIDIKKIIVNLKERGLGVLITDHNVRETLDVCERAYIVGSGEMIAS
                     GTPQQVLENPDVKRVYLGDQFKL"
     gene            4322..4834
                     /locus_tag="PXE26_001265"
     CDS             4322..4834
                     /locus_tag="PXE26_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL5593853.1"
                     /translation="MTKLTEFLSPENVRQGVLISSKKRALELVGKIVAESINQTEQQS
                     EALCPIECFGNLFKREKLGTTGLNQGIALPHAKLPACGDIELTKPIAVFLQLEEAIDY
                     EAQDNKEVDLIYAMMFPENSCEQYKSCLPAIAQKLTDKSLLKQLRAAESAEDIWQILV
                     YADNHLKDEE"
     gene            4847..5710
                     /gene="rapZ"
                     /locus_tag="PXE26_001266"
     CDS             4847..5710
                     /gene="rapZ"
                     /locus_tag="PXE26_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HDL5593854.1"
                     /translation="MELIIISGRSGSGKSVALRALEDAGYYCVDNIPLPLIPTLTYYL
                     TQENRSAVISLDIRNLPNTPNAIEELLTQLEPLNAKLIFLDCERNTLIRRYSDSRRIH
                     PLSTQDDLSLEGALDLEQKLLEPLVQNANYIIDTSHLSSHELAENLRQILQGSTEKEL
                     KIIFQSFGFKYGLPADSDYVFDVRFLPNPHWNPELRPMTGLEQPVIDFLERQTEVHNF
                     IYQTRNYLEMWLPMLEQNNRSYLTIAIGCTGGKHRSIFIAEQLAKYFQAKGKNVQVRH
                     KSLEKHHKKTS"
     gene            5793..6977
                     /locus_tag="PXE26_001267"
     CDS             5793..6977
                     /locus_tag="PXE26_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDL5593855.1"
                     /translation="MKSADIVIVGGGMVGLALAGLLKDVDCQIKIIEKNTPKFDADTI
                     YHRVSAINASSQKILEQIGAFQHIPAQRLSPYTEMKVWEKDSFANIHFDNNDNEIKQL
                     GLSQLGFILENAVIQHALWQQVSQQANVEYIIAAPQTLGVSENGAFLTLDNGEMLSAK
                     LVVGADGANSWVRNQMKMPLTSKDYQHTALVCNVKTTEKHGKTARQIFAEDSIFAFLP
                     MADEHLCSIVWSLPPNKANELKNASEAEFNKALTIAFDNQLGLCEVQSLREIYPLAAR
                     FCRDFAQPRIALIGDAAHTIHPLAGLGVNLGFADARTLANEIQKQLVNNQDIGEYRHL
                     RQFERERKAQAMKLLATMEGLKQLFDGNHPLKKLFRGIGLSLTNQLPFVKKQLIQQAI
                     YL"
     gene            7109..7693
                     /locus_tag="PXE26_001268"
     CDS             7109..7693
                     /locus_tag="PXE26_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein HlpB"
                     /protein_id="HDL5593856.1"
                     /translation="MNKLTKISATALVALFLAACDKPAEKAPATEPTKTTEAAPTTTA
                     PAAEAAKPAETAVAAPSEAAKADYQKLVDWNTAQESTMATAQAELQKKLATQDPKQIQ
                     EGLSAFNKKVEETVKSLDAIEVSDAQIKTFKEKTKSVLTLSSEVISEQVKTISTPNDQ
                     AALQAVQQKAQSLIEAGNELQKLNVELQQRFSAK"
     gene            7760..8446
                     /locus_tag="PXE26_001269"
     CDS             7760..8446
                     /locus_tag="PXE26_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein Hlp"
                     /protein_id="HDL5593857.1"
                     /translation="MNTLAKISLSVLFTLFLTACEQPNSTKTQSSAESPVQVKEESKE
                     EVKPADTGAQDYKMLREWQDTQEKALNDAIKAATETLTDKQKADSTLMQETVNNALLA
                     QIDHIKISAETLNIQNNEVKALKDKTLEVLTLGAQMIVEGAKMEKNPTPEAHKAFGEL
                     QTKLNQLAEEGQQLENILRAKYDPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAP
                     APAPAPAPQQ"
     gene            complement(8527..9462)
                     /gene="ftsX"
                     /locus_tag="PXE26_001270"
     CDS             complement(8527..9462)
                     /gene="ftsX"
                     /locus_tag="PXE26_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="HDL5593858.1"
                     /translation="MIRSFSKLGAQTNYSLRAVWQDLMQRKLGTFLTVLVIAVSLTIP
                     TVSYLLWKNTHEAATQFYPEPQLTVYLHKNLAEHDVNTVVDRIRAFETDKIESFNYIS
                     RQQSLDEFRSWSGFGEALDILDENPLPAVVTLKPKANFNNADTMVELRNGLQQIKGVQ
                     EVRLDNGWLEKLTALTWLIARIAVVCTLLMLLAVFLVIGNSVRTDVANSKAAIEVQQI
                     LGATDHFIARPFLYTGMIYGLFGSLLAVLFSAVTISYFTGVVKYVTDMFTVQFELNGL
                     DFSEAFFLVVLCVFIGWLSAKIATMRNIFRIGSRG"
     gene            complement(9472..10125)
                     /gene="ftsE"
                     /locus_tag="PXE26_001271"
     CDS             complement(9472..10125)
                     /gene="ftsE"
                     /locus_tag="PXE26_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HDL5593859.1"
                     /translation="MIKFTNVNKVYKGGKPALQGIDFHLPAGGMAYITGHSGAGKSTL
                     LKLIMGIERANGGQILFNGHDITRLAHHELPFLRRQIGMVHQDYRLLTDRTILDNVAL
                     PLIILGMNQAIVEREARIALERVGLADKANYLPLHLSGGEQQRVDIARAIVHRPTLLL
                     ADEPTGNLDEKLSFEIFRLFEEFNQAGTTVLIATHDTNIISKRPKPCLVLEQGHLKF"
     gene            complement(10118..11614)
                     /gene="ftsY"
                     /locus_tag="PXE26_001272"
     CDS             complement(10118..11614)
                     /gene="ftsY"
                     /locus_tag="PXE26_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HDL5593860.1"
                     /translation="MSEKKKGFWSWLGFGKKEEAEQKEIQQEQESIQPEQPVIVEPET
                     EKSFSEKLDELEDKIEEKVDQLEDYFEEKEEKIEQFAEQVEDTIEQKVEDFKEFVEEK
                     VEEAKAFFDDVEDKIEQTFEEQKGEQAVENLQNIATEQLDLNEQEQVTYQVEEAVAEE
                     VAETELVNNVQDTVEESTIQDEYQEKPSQGGFFSRLIQGLIKTKQNIGSGFRNFFRGK
                     KIDDELFEELEEQLLVADLGMPTTQKIINNLTQHATKQQLKDADLLYQQLKVELGEVL
                     KPVAQPLVLEAKKPYVILMVGVNGVGKTTTIGKLARKFQQEGKSVMLAAGDTFRAAAV
                     EQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAAKGIDVLIADTAGRLQNKNNLMD
                     ELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVGLTGITLTKLDGTAK
                     GGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEFIEALFSHEDEQND"
     gene            11693..12283
                     /gene="rsmD"
                     /locus_tag="PXE26_001273"
     CDS             11693..12283
                     /gene="rsmD"
                     /locus_tag="PXE26_001273"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HDL5593861.1"
                     /translation="MKKNRNSPQSVQQMGEVRVIAGLWRGRKLPVLNAEGLRPTTDRV
                     KETLFNWLMHDIAHSRCLDCFAGSGSLGIEALSRQAQAVVFLEKFANAANQLKKNLQA
                     LKSEQGSVIHTDTLAYLAQKNNGEPFNIVFIDPPFHQGFVPQVLNLLAENNWLAPNAI
                     LYVETEKNHPPLELPQGWQILKEKAAGMVVSRLIQL"
     gene            12367..12681
                     /locus_tag="PXE26_001274"
     CDS             12367..12681
                     /locus_tag="PXE26_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciU family protein"
                     /protein_id="HDL5593862.1"
                     /translation="MKKLTPDEAIDIAYDIFLEMAGENLDPADILLFNLQFEERGAVE
                     MVETSEDWDQEIGTLIDPDAFAEVWVGLVNEQDEMDDVFARFLISHDEENREYHVVWK
                     EK"
     gene            12694..13206
                     /gene="hpaC"
                     /locus_tag="PXE26_001275"
     CDS             12694..13206
                     /gene="hpaC"
                     /locus_tag="PXE26_001275"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     reductase component"
                     /protein_id="HDL5593863.1"
                     /translation="MANIDTNQPIEASLKFREAMAHLSSAVSIVTTNGVAGKAGLTVS
                     SVCSVTDSPPTLLFCINKNSHVHDIIQQNGKVCVNVLSHEQEDLAKHFAAILESTMEE
                     RFGWDIWNNGFDDQPVLRSAISALQGNIVDTHAVGTHTIFVVEVSHIDVEPNHSLVYF
                     ARQFRSVNID"
     gene            13324..14196
                     /gene="tehB"
                     /locus_tag="PXE26_001276"
     CDS             13324..14196
                     /gene="tehB"
                     /locus_tag="PXE26_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase TehB"
                     /protein_id="HDL5593864.1"
                     /translation="MENLICYKQMPVWTKATLPQMFQEKHNTKVGTWAKLTILKGSLK
                     YYELTEEGEIIKEDIFDANHQRPMVEPQLWHKVEALSDDLECQLAFYCKPEDYFAKKY
                     NLTATHSEVLNAVNYTKGGKALDLGCGRGRNALYLNLLGFDVTAVDHNQESIDFLNYM
                     IEKEQAQNITTAVYDINEATIGSQNGEYDLIISTVVMMFLNRERIPAIIENMQKNTKV
                     GGYNLIVCAMSTDDYPCPMPFSFTFKEGELADYYQGWELVKYNEDLGHLHKTDENGNR
                     IQLRFATMLAKKIS"
     gene            14334..15371
                     /gene="purM"
                     /locus_tag="PXE26_001277"
     CDS             14334..15371
                     /gene="purM"
                     /locus_tag="PXE26_001277"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011962107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HDL5593865.1"
                     /translation="MSNTQLSYKDAGVDIHAGNELVERIKPDVKRTRRPEVMGGLGGF
                     GALCALPTKYKEPILVSGTDGVGTKLRLAIDLNKHDTIGQDLVAMCVNDLVVQGAEPL
                     FFLDYYATGKLEVDVATNVVKGIADGCVISGCALVGGETAEMPGMYHEGDYDLAGFCV
                     GVVEKSKIIDGSTVKTGDALIALASSGPHSNGYSLIRKVLEVSRSNPATDLLEDKPLS
                     EHLLAPTKIYVKSILKLVEEVDVHAIAHLTGGGFWENIPRVLPESAKAVIDESSWQWP
                     AIFSWLQEKGNISRYEMYRTFNCGVGMVIALPERDVEKALTLLKESGENAWLIGKIED
                     LGTGSEQVEIR"
     gene            15449..15727
                     /locus_tag="PXE26_001278"
     CDS             15449..15727
                     /locus_tag="PXE26_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HDL5593866.1"
                     /translation="MQLFWPIYFVLMNLAALYLMYSDKQKAIKKEWRVPEITLLSFCL
                     LGGAIGVYLGMKYFRHKTQHWYFHVAVVLSTFAWLIGLPYFYLALSSY"
BASE COUNT         4821 a         3337 c         3097 g         4498 t
ORIGIN      
        1 ttatcaaacg aagtctttat ttcgattatc gtgctgttaa tcctaagctt gcttagaatt
       61 aatgtagtaa tcgcacttat tatttctgcc cttacttgcg gtctaatcgg taatcttggt
      121 gtagaagggg ctggatttac cgaagcattg gaaaaaacaa taaaaagttt tactggtggt
      181 ttaggtgggg gtgcggaaac tgctatgaac tatgccgttc ttggtgcgtt tgccgtagct
      241 ctatcaaaat caggcgtgac cgatttatta gcctataaag tgatcaaatc ctttggtcac
      301 agcccgtcag gtcgctccgt tacttggttt aaatacattg tattatttgt gttagtggca
      361 tttgcaatgt catctcaaaa cctaattcca attcatattg cctttattcc gattttaatt
      421 ccaccgctat taagcgtaat gaataaattg caaattgacc gccgtgcggt agcttgtgct
      481 ttaacctttg gtttaaccgc cacttatatg ttaattccgg caggtttcgg tcagatcttt
      541 attgaaagca tcttagttaa aaatatcaac caagcaggtg aaccgttcca attagtgact
      601 accacagcgg aaatgaccaa agcgatgtta attcctgttt ccggtatgat tttaggctta
      661 ctgtttgcat tctttgtgtc ataccgtaaa ccgcgtgtgt atattgaaaa tatgcctgaa
      721 ccaaccgcag atgatattga agcccgtgtt gcaaacgtta agcccttcca tatcggcatt
      781 agtattgtgg cgattatcgc gacctgttcg gtgcaattag caacaaattc gactattatc
      841 ggcggcttag tcggtctggt tattttcgcc ttaggcggtg tatttagact gaaagagagt
      901 aacgatgtct tccaagctgg cttacgttta atggcgatga ttggctttgt gatgattgcc
      961 gcctccggtt ttgccggcgt ggtcaattca acaggcggtg tgccggcatt ggtagaaagc
     1021 ctgcgtgatg tgatttcatc aaaagaaatg gcagcattgc taatgttagt cgttggctta
     1081 tttattacga tgggtatcgg ctcttcattc tcgactgtgc cgatcattac ctcaatttat
     1141 gtgccgcttt gtatctcatt tggcttctcg ccactggcga caatggcgat tgtcggtgtt
     1201 gctgctgcac tcggtgatgc aggttctccg gcatcagatt ccacacttgg tccaacctcc
     1261 ggcttgaatg ctgacggtaa acacgaccac atttgggatt ctgttgtacc aacttttatc
     1321 cactttaaca ttccattatt agtgttcggc tggattgcag caatgacact ttaagctata
     1381 atatgcaaaa tttttgctaa aaatgaccgc ttgtagccat tacaagcggt ctattttctt
     1441 ctttattttg caaaccacat taggatcacc aatgaaattt atctctttta atatcaacgg
     1501 attacgagcc agaccacatc agctcgaagc gattatcgaa aaacaccagc ccgatgtact
     1561 cggcttacaa gaaatcaaag ttgccgatga agattttcct tacgatttag tcaatcactt
     1621 aggctaccac gttttccacc acgggcagaa aggtcattac ggcgtggcat tactgactaa
     1681 aaaagagcct atagcggtgc gtaaaggctt cccgacagat gtacttgatg ctcaaaaacg
     1741 aatgattatg gcggatatcg agaccgattt cggcgtgcta accgtattaa acggctattt
     1801 cccacagggg gaaaatcgca gccacgaaac caaattcccg gcaaaacaaa aattctatgc
     1861 tgatttgcag aactacttgg aaagcgaatt aaagccggaa aatccgatta ttattatggg
     1921 cgatatgaac atcagcccga ctgatttgga tatcggcatc ggcgagccaa accgcaaacg
     1981 ctggctgcgt gacggtaaat gttcattctt acccgaagag cgtgaatggc tagatcgctt
     2041 atacagctac ggcttggttg atactttccg tgcaggcaac ccagacgtga acgataagtt
     2101 ctcttggttt gactaccgtt caaaaggttt tgatgataat cgtggcttgc gtattgattt
     2161 aattcttgct tcaaaatcac ttgctgagcg ttgcgtggaa acaggcattg atttagacat
     2221 tcgagcaatg gaaaaaccgt ctgaccactc ccctgtttgg gcaaccttta aataaagttg
     2281 caaaaaaatc tgagttttca accgcttgtc agtttttagc cctacaagcg gttatttttt
     2341 ctcacttttt tgcacttttt acgctgtact atatccctat tcaaatctgt gctacaatca
     2401 aacactattt ttagattatt tttggattat gaacaaacgt ttaaccgtta ttttactgat
     2461 tattgttgcc gtacttggtg gctggtatta cagcttacaa gagaaagaga atacggggct
     2521 tgatcagctt attaaaaagg aaggacagcc tgaatatgtg gggaataaaa tgtccaccac
     2581 ggtctatgat ctaaaaggaa acccacaata tttcgctcaa gctactgaaa ttaaacgcta
     2641 tgagtctact gagcgtactg agttttttaa accttttatt gagctttttg ccaaagagtc
     2701 gacgcaaaaa cagtggaaag tcagtgccga ttatgcagaa attaccaaag aaaaaatgtt
     2761 aaatttaaaa ggtaatatca aacttgttgc attagatcct gcatcacgtt tgcaacaaat
     2821 cactaccgat acgttaactg ttgatttaaa tacacaggat atttttaccg aaagtacggt
     2881 caaatcgata ggttccggtt ttactacaac gggggttgga ttaaaaggta acttaaaaca
     2941 acaagttgcg actttgcaaa aagatgtaaa atcttacatt gaaccgacca ttattcaaga
     3001 aactaaagaa taatttgctt ggaacaagga ataacaatga aattaatgtt taaatctatt
     3061 ttagtgagcg tgttactggg tagcagcttt tccgcttatg ctctaaaagg cgataccgat
     3121 cagccgatta atattgattc aggtagccaa tcgttagata tgactaacaa tatcgtgacc
     3181 tttagcgata atgtcgttat cactcaaggg tcgattaaag tgaccgcagc aaacgtcaaa
     3241 attacccgtc aagaaggtaa aaaagaaact attgacgcta caggctcacc tgtaacattc
     3301 caacaaacct tagataacgg taaaccggta aacggtaaag gcaacagcgt tcattatgat
     3361 ttaaactctg aatttttaac gctgattggc aatgcggaac tcaaacaaca aggtagcttt
     3421 attaaagcca ataaaattac ctatgatgtg aaaaaacaac aacttaaagc taccagtggc
     3481 ggtaaaaccc gagtgaaaac cgtgctaatt ccaaatgaac ttcaagataa caagaaaaaa
     3541 taaggttaaa tgatatgtct gtgctttatg ccgaacattt agcaaaaagc tataaacaac
     3601 gccaagtggt aaaagacgtc agcctgaatg tcaaatcagg tgaaatcgtg ggcttgctcg
     3661 gtccgaacgg cgcaggtaaa accaccactt tctatatggt tgtgggtttg gttcgccacg
     3721 accacggcac aattcgtatt gacgaccaag atatcagcac actaccaatg cacgacagag
     3781 caaaacaagg gattggctat ctaccgcaag aagcatctat tttccgccgt ttaagtgtgt
     3841 acgataactt aatgtcggta ttacaagtgc gtaaaaatat caatgataaa cagcgtaaag
     3901 agcgtgccga agagctgatt acagaattcc atattgagca tattcgcaat agtttaggtc
     3961 aatcactttc aggtggtgaa cgccgccgtg tggaaattgc ccgagcatta gcagcgaacc
     4021 cgaaatttat tctgttagat gaaccttttg ctggggttga cccaatctcg gtaattgata
     4081 ttaaaaaaat tatcgtcaat ttaaaagagc gtggtttagg ggtattgatt accgaccata
     4141 acgtacgtga aactctagat gtatgtgaaa gagcctacat tgtcggtagc ggcgaaatga
     4201 ttgccagcgg cacaccacag caagtgcttg aaaaccctga tgtaaaacgt gtttatttag
     4261 gcgatcaatt caaactctaa aaaatcccct ctttggggat ttcatcttta gatgaaaaat
     4321 tatgacaaaa ctaaccgaat ttctaagccc tgaaaatgtt cgccaaggtg tactgatttc
     4381 aagtaaaaaa cgagcgttag aactcgtggg taaaatcgtg gctgaatcaa tcaaccaaac
     4441 cgaacagcaa tctgaagcac tctgccctat tgaatgcttt ggcaatttat ttaaacgtga
     4501 aaagttaggc acaaccggct taaatcaagg cattgcactt cctcatgcaa aattgcccgc
     4561 ttgcggtgat attgagctga ctaaaccgat tgcggtcttt ttacaactgg aagaagcgat
     4621 tgactacgaa gcccaagaca acaaagaagt ggatttaatt tatgcaatga tgtttccgga
     4681 aaatagctgc gaacagtata aaagttgcct acctgcaatt gcacagaaac ttaccgataa
     4741 atcgttatta aaacagctcc gagcagctga atccgcagaa gatatttggc aaattttggt
     4801 gtatgctgat aatcacctaa aagatgaaga ataatactga ggaaatatgg aattaatcat
     4861 tataagcgga cgctcaggct ctggtaaatc ggtagcatta agagcattag aagatgcagg
     4921 ttattactgc gtggataata tccctttacc tttaattcca accttaacct actaccttac
     4981 tcaagaaaat cgttcggcag tcatcagctt agatattcgt aatttaccga atacgcctaa
     5041 tgcgattgaa gaattgctta cccagcttga gcctttaaat gctaagctga tttttttaga
     5101 ttgcgaacgc aataccttaa tccgccgtta tagcgattcc cgccgaatcc acccgctttc
     5161 cacccaagac gatctctcgt tagaaggtgc attggatttg gaacaaaaat tgcttgagcc
     5221 tttggtgcaa aatgcaaatt atattattga caccagtcat ctttcttcgc acgaattagc
     5281 ggaaaatctt cgccaaatac tgcaaggctc aaccgaaaaa gagcttaaaa ttattttcca
     5341 atcattcggt tttaaatacg gcttacctgc cgattccgat tacgtttttg atgttcgctt
     5401 tttaccgaac ccacattgga atccggagct tcgcccaatg acaggcttag agcaaccggt
     5461 gattgatttc ttagaacgcc aaaccgaagt gcataatttt atttaccaaa cccgcaatta
     5521 tttagaaatg tggctgccga tgttggaaca aaataaccgt agctacctaa ctattgcgat
     5581 tggttgcact ggtggaaaac atcgttccat atttattgcc gagcaactgg caaaatattt
     5641 ccaagcaaaa ggcaaaaatg tgcaagttcg gcataaaagt ttggaaaaac accataaaaa
     5701 aacatcttaa ataagtaggg gctggtcctg tgccagccct catttcaact attttagggc
     5761 gggcacaggg caccgcccct acatttgatt ttatgaaatc cgcagatatt gttattgttg
     5821 gcggcggtat ggttgggctg gctcttgccg gactgctcaa agatgtcgat tgccaaatta
     5881 aaattattga gaaaaacacg cccaaatttg atgccgatac gatttaccac cgtgtaagtg
     5941 cgattaatgc ttcaagccaa aaaatactgg aacagattgg tgcttttcaa cacattccgg
     6001 ctcaacgcct ttctccttac accgaaatga aagtgtggga aaaagacagc tttgctaata
     6061 tccattttga taataatgat aatgaaatca agcaattagg actttcacaa cttggcttta
     6121 ttttggaaaa tgcggtgatt caacacgcat tgtggcaaca ggtttctcaa caagctaatg
     6181 tagaatatat tatcgccgcc ccccaaactc tgggcgtgag cgaaaacggg gcatttttaa
     6241 ccttagataa cggcgaaatg ctgtctgcta aattggttgt cggggcagac ggtgcaaatt
     6301 cgtgggtgcg taaccagatg aaaatgccgc ttaccagtaa agattatcaa cataccgcct
     6361 tagtctgtaa tgtcaaaaca accgaaaagc acggcaaaac cgctcgtcaa atctttgctg
     6421 aagatagcat ttttgctttt ctgccaatgg cagatgagca tctctgctcg attgtttggt
     6481 cgctgccacc aaacaaagcc aatgaattaa aaaatgcaag cgaagccgaa tttaataaag
     6541 ccttaacgat tgccttcgat aatcagcttg gcttatgtga agtgcaaagt ttgcgtgaaa
     6601 tttacccgct tgcagcacgc ttctgccgtg actttgccca acctcgtatt gcgttgattg
     6661 gtgatgccgc tcataccatt cacccattgg cgggacttgg tgtcaattta ggctttgccg
     6721 atgccagaac gctggcaaac gaaatccaaa aacagttggt aaacaaccaa gatattggtg
     6781 aataccgcca tttacgccaa tttgaacgtg agcgtaaagc ccaagcgatg aaattattag
     6841 ccacaatgga aggattaaaa cagctatttg acggcaatca cccgcttaaa aaattattca
     6901 gaggaattgg tttaagccta accaaccagc tgccttttgt gaaaaagcag cttattcagc
     6961 aagctattta cttataaaat gtaaattttt tcgaaataac gtaaagatga acgattttat
     7021 gaactaatac ggagattact tgtctattta ttggtacaat aaccagcctt tattggcttt
     7081 tatttttata ttcttgagga attttttaat gaacaaatta acaaaaatca gtgcaaccgc
     7141 tttagtcgca ttattcttag cagcttgtga taaaccagca gaaaaagcac cggcaacaga
     7201 acctacaaaa acaactgaag ctgcaccaac tacaacagct cctgctgcag aagcagccaa
     7261 acctgctgaa acagctgtag ccgctccaag cgaagctgca aaagcagatt accaaaaatt
     7321 agttgattgg aatacggcac aagaaagcac aatggcaaca gcacaagcag aactacaaaa
     7381 gaaattagct acacaagatc ctaaacaaat tcaagaagga ttaagtgcat ttaataaaaa
     7441 agtagaagaa actgtaaaaa gcttagatgc gattgaagta tctgatgcac aaatcaaaac
     7501 atttaaagaa aaaacaaaat cagttttaac actttcaagt gaagtgattt ctgaacaagt
     7561 aaaaacgatc tctacaccaa atgaccaagc agcattacaa gccgtacaac aaaaagctca
     7621 gtctttaatt gaagctggta atgagttaca aaaattaaac gtagaattac agcaaagatt
     7681 ctcagctaaa taatttacca ttcaatgaaa agctagagta ttttgctcta gctttttttt
     7741 gcaattacta aggattacta tgaacacgct cgctaaaatt agcctatctg tattatttac
     7801 ccttttttta accgcttgcg aacaacctaa ttctaccaaa acacagagct cagcagaatc
     7861 gccagttcaa gtgaaagaag agtcaaaaga agaagttaaa cctgctgata ccggcgctca
     7921 agattataaa atgttacggg aatggcaaga cactcaagaa aaagccttaa atgatgcaat
     7981 taaagcggca acagaaacac ttactgacaa acaaaaagcc gattctacct taatgcaaga
     8041 gacagttaat aacgcattat tagctcaaat tgatcatatt aagataagtg ctgaaaccct
     8101 gaatattcaa aataatgaag tcaaagcact aaaagacaaa accttagaag tcctgacttt
     8161 aggggctcag atgatcgtag aaggtgctaa aatggagaaa aatcctacac cggaagcaca
     8221 taaagcattt ggcgagttac aaacaaaatt gaatcaatta gctgaagaag ggcaacagtt
     8281 agaaaatata ttaagagcta aatatgatcc agctccagct ccagctccag ctccagctcc
     8341 agctccagct ccagctccag ctccagctcc agctccagct ccagctccag ctccagctcc
     8401 agctccagct ccagctccag ctccagctcc agctccacag caataatata ttgcttatag
     8461 taaaaaacca agttcctagg aactggtttt tatctgcaat tatttctcta aaaacaaccg
     8521 cttgtattag cctctactac caatacggaa aatatttcgc attgtcgcaa tttttgccga
     8581 cagccagcca ataaacacac aaagcaccac taagaagaag gcttcgctga aatctaatcc
     8641 gttcagttca aattgtacgg taaacatatc agtcacatac ttcactacac cggtgaaata
     8701 gctaatcgtt accgcactaa acagcaccgc taacaggctg ccaaacaagc cgtaaatcat
     8761 acctgtgtat aaaaacggac gggcaataaa gtgatcagtt gcccctaaaa tttgttggac
     8821 ttcaatcgct gctttgctat tggcaacatc ggttcgcaca ctgtttccaa tcactaaaaa
     8881 aactgccaac agcattaata aggtacacac caccgcaata cgagcaatca gccaagttag
     8941 agcagttaat ttttccagcc agccgttatc taaacgaacc tcctgcaccc ctttaatttg
     9001 ttgcaaaccg ttgcgtagct ccaccatcgt atcagcatta ttaaaatttg ctttcggttt
     9061 taaggtaacg accgcaggca acgggttttc atctaaaata tctaacgctt caccaaagcc
     9121 tgaccaagaa cgaaattcgt ctaaactttg ttggcgagaa atatagttaa atgactcaat
     9181 tttatccgtc tcaaaagcac gaatgcgatc aacaacggta ttcacatcgt gttctgccaa
     9241 atttttgtgc agataaacgg ttaattgtgg ctcagggtaa aattgtgttg ctgcctcgtg
     9301 ggtattcttc caaagtaaat aactcacggt tggaatcgta agtgagaccg caatcaccag
     9361 caccgtcaga aaagtgccga gcttgcgttg cattaaatct tgccaaaccg ctcttaaaga
     9421 gtagttggtt tgagcaccta atttactaaa tgaacgaatc ataatatttc cttaaaattt
     9481 aagatgccct tgctccagca ctaaacacgg ctttggacgc tttgaaataa tattggtatc
     9541 gtgggtggca atcagcaccg ttgtgccggc ttgattaaat tcctcaaaca aacggaaaat
     9601 ttcaaacgag agcttttcat ctaagtttcc ggttggctca tcggctaata acagcgttgg
     9661 gcgatgaaca atggccctgg caatatcgac acgttgttgc tcaccgccgg aaaggtgcaa
     9721 cggcagatag ttcgctttat ctgccaagcc aacacgctca agggcaatgc gggcttcacg
     9781 ctccacaatc gcttggttca ttcccaaaat aatcaatggt aatgcgacat tatccaaaat
     9841 ggttcggtcg gttaataagc gataatcttg atgcaccatc ccgatttggc ggcgtaaaaa
     9901 cggcaattca tgatgagcaa gtcgggtaat atcgtgtccg ttaaacaaaa tttgcccgcc
     9961 attggcacgc tcaatcccca taattaattt taatagcgtg cttttccccg caccggaatg
    10021 cccggtaata tatgccattc caccggcagg taggtggaaa tcaatgccct gtaaggctgg
    10081 ctttccgccc ttataaacct tgttcacatt agtgaattta atcattctgt tcgtcctcgt
    10141 ggctaaataa ggcttcaata aattcttctg cattaaacgg gcgtagatct tcaattttct
    10201 cgcccacccc aataaagcgg atcggaatat tgaattgatc ggcaatcgca aaaatcacgc
    10261 caccttttgc cgtaccgtct aatttagtta aggtgatacc ggttaaaccc actgcctcat
    10321 taaacaattt cgcttggctg atcgcatttt gcccagtgcc ggcatcaagc gtaagcataa
    10381 tttcgtgcgg tgcggtttca tcatattttt tcatcacccg cacaattttc ttcaactcgt
    10441 ccatcaggtt atttttgttt tgcaaacgcc ctgcagtatc agcgattagc acgtcaatcc
    10501 cttttgccgc agcggattgc atcgcatcaa aaatcaccga ggcagaatcc gaaccggtgc
    10561 tttgtgccac caccggaatg ttatttcgct ctccccaaac ctgtagctgt tcaactgccg
    10621 ccgctcggaa cgtgtctcct gctgctaaca ttaccgattt gccttcttgt tggaatttac
    10681 gggcaagttt gccaatggta gtggttttcc ccacgccatt cacaccaacc attaaaatga
    10741 catacggttt tttcgcttcc aacactaacg gttgagccac cggttttagc acttcaccca
    10801 gttccacttt caactgttga tacaacaaat ctgcatcttt taattgttgc ttggtagcat
    10861 gttgcgttaa attgttgatg attttttgtg tggtcggcat acctaaatcc gccacaagca
    10921 actgctcttc cagctcttca aataactcat catcaatttt cttgccacgg aagaaattac
    10981 ggaagcccga accaatattc tgcttggttt taatcaagcc ttgaattaaa cgactgaaga
    11041 aaccgccttg actcggtttt tcttgatatt catcttggat agtagattct tcaactgtgt
    11101 cttgaacatt atttactaat tcagtttcag caacttcttc agccacagcc tcttcgactt
    11161 gataagtaac ttgctcttgt tcgttgagat ctaactgctc agttgcaata ttttgaagat
    11221 tttcgaccgc ttgttcgcct ttttgttctt caaatgtttg ttcgatttta tcttcaacat
    11281 catcaaagaa cgctttcgcc tcttcaactt tttcttcaac aaactctttg aaatcttcga
    11341 ctttttgttc aatggtatct tctacttgct cagcaaattg ctcaattttt tcttcttttt
    11401 cctcaaaata gtcttctaac tgatctacct tttcttcaat tttatcttcc agctcatcta
    11461 atttttcaga aaacgacttc tcagtttccg gttcaacaat aacaggctgt tccggttgaa
    11521 tactctcttg ttcttgttga atctctttct gttcagcttc ttctttctta ccaaatccaa
    11581 gccaagacca aaaccctttt ttcttctctg acatattttt ctctcatttc tcgtaaaaat
    11641 agactaaact tacatagtct atcaaaaaat cccttatttt cctttagtga gtatgaaaaa
    11701 aaatcgaaat tccccccaat ctgttcagca aatgggcgaa gtacgggtta tcgccggact
    11761 gtggcgaggc agaaaattac ctgtactaaa tgccgagggg cttcgcccga caaccgatag
    11821 agtaaaagaa acgctgttta actggttaat gcacgacatt gctcactcac gctgtcttga
    11881 ttgctttgca ggcagtggct ctctgggcat tgaagccctt tcccgccaag cacaagcggt
    11941 cgtttttttg gaaaaatttg caaatgctgc caaccagtta aagaaaaatc tccaagcatt
    12001 aaaatccgaa caaggtagcg ttattcacac tgacaccctc gcctatttag cacaaaaaaa
    12061 taacggtgag ccatttaaca tcgtatttat cgatccgcct tttcatcaag ggtttgtacc
    12121 tcaagtgcta aacttgctgg cagaaaataa ctggctcgcc ccgaatgcga ttttgtatgt
    12181 ggaaaccgag aaaaatcacc cgccattaga gctaccgcaa ggctggcaaa ttttaaagga
    12241 aaaagcagcc ggaatggtgg taagccgtct gattcagcta taatcttttt gttttttata
    12301 actaaaaaat ataaaataaa acttatctat ctaacatttt attaacactc aaattagaat
    12361 aacgaaatga aaaaattaac ccctgatgaa gccattgata ttgcctacga tattttctta
    12421 gaaatggcag gcgaaaattt agatcctgcc gatattttac tgttcaacct ccaatttgaa
    12481 gagcgtggtg cagtggaaat ggtcgaaact tctgaagact gggatcaaga aatcgggact
    12541 ttaattgacc ctgatgcctt tgccgaagtt tgggttggct tagtcaatga acaagatgaa
    12601 atggacgatg tattcgcccg tttcttaatt tcccacgatg aagaaaaccg tgaatatcac
    12661 gttgtttgga aagaaaaata aaaaggagaa aaaatggcta atatcgacac taatcaacca
    12721 atagaagcct cgcttaaatt tcgtgaagca atggctcact tatcttctgc ggtgagcatt
    12781 gtgacaacca atggcgtagc cggcaaagca gggctgacgg tttcgtctgt ttgttccgtt
    12841 accgattccc caccaacgct cttattttgc attaataaaa acagccacgt tcacgatatt
    12901 atccaacaaa acggcaaagt atgcgttaat gtgttaagcc acgaacaaga agacttagca
    12961 aaacattttg ccgccatttt agaaagtaca atggaagaac gctttggttg ggatatttgg
    13021 aacaacggct ttgacgatca gcctgtgtta cgcagtgcta tttctgcttt acaaggcaat
    13081 attgttgata cgcacgcagt gggtacgcat actatttttg tggtagaagt gagccatatt
    13141 gacgtagagc cgaaccacag tttagtttat tttgcccgcc aatttagaag cgtgaacatt
    13201 gactaaaata tatttaacag aaatttgatc aaatccgact tttttagtcg gattttttat
    13261 ttcctgtttt taaaacagtg ctaaaatttt gccgtttatg tttgactgac aaaaggaaac
    13321 aaaatggaaa atttaatttg ctacaaacaa atgccggtgt ggacaaaagc aaccttacca
    13381 caaatgttcc aagaaaagca caacaccaaa gtcggaactt gggcaaaact caccattctc
    13441 aaaggttctc tcaaatatta tgaattaacc gaagagggag aaattatcaa ggaagatatt
    13501 tttgatgcaa accaccaacg cccaatggtt gagcctcaac tttggcataa ggttgaagct
    13561 ctttctgacg atttagaatg ccagttggct ttctattgca agccggaaga ttattttgct
    13621 aaaaaatata atctgaccgc tacccattca gaagtgctaa atgccgtcaa ttataccaaa
    13681 ggtggcaaag cgttagattt aggttgcggg cgaggacgca atgcacttta tctgaattta
    13741 ctgggttttg atgtcactgc tgttgatcat aatcaagaaa gcattgattt tctcaactat
    13801 atgatcgaaa aagaacaagc tcaaaacatt actaccgctg tttatgatat taacgaggca
    13861 actatcggct cgcaaaacgg tgaatatgac ctgattattt ccactgttgt aatgatgttc
    13921 ttaaaccgtg aacgcattcc tgccattatt gagaatatgc agaaaaacac taaagtcggc
    13981 ggttataact taatcgtatg tgcaatgagt accgatgact acccttgccc gatgccgttc
    14041 tcctttacct tcaaagaagg cgagctcgcc gattattatc aaggttggga attagtcaaa
    14101 tataacgaag atttaggaca tttacacaaa actgatgaaa acggcaaccg cattcaacta
    14161 cgttttgcga caatgttggc gaaaaaaatc agctaaactt aaccgcttgc agggggaatt
    14221 agcttccccc taattcatca aatccattct atttattttc actttttcat tccgcaaacg
    14281 tttgcttgtg ctataatggc ttcgtttttt agtcatttac tgttgaggtt aaagtgagca
    14341 acacacaact aagttacaaa gatgccggcg ttgatattca cgcaggaaac gagttagtcg
    14401 aacgaatcaa gcctgatgtt aaacgcaccc gtcgccctga agtaatgggc ggattaggtg
    14461 gttttggtgc tttatgtgct ttaccgacaa aatataaaga gccgatttta gtttccggta
    14521 ccgatggcgt cggcacaaaa ttacgcttag ccattgactt aaacaaacac gatactatcg
    14581 ggcaagattt ggtagcgatg tgtgtgaatg accttgtcgt gcaaggtgct gaaccgcttt
    14641 tcttcttaga ttattacgcc accggtaaat tagaggttga tgtagccacc aatgtcgtca
    14701 aaggcattgc agacggttgc gtgatttcag gttgtgcttt agtgggaggt gaaacggctg
    14761 aaatgccggg aatgtaccac gaaggcgatt acgatttagc cggattctgt gtcggtgtgg
    14821 tagaaaaatc taaaatcatt gacggttcaa cggtgaaaac cggtgatgcc ttaattgcat
    14881 tagcgtccag tggcccgcat tccaacggct attcgttaat tcgtaaagta ttggaagtca
    14941 gccgatccaa tcctgcaacc gatttattgg aagacaaacc cttaagcgaa cacttattag
    15001 ccccaactaa aatttatgta aaatcaatcc taaaattagt tgaagaagtt gatgttcacg
    15061 ctatcgctca cttaaccggt ggcggtttct gggaaaatat tccacgcgta ttgccggaat
    15121 ctgccaaagc ggtgattgat gaatcgagct ggcaatggcc ggcgatattt agctggttac
    15181 aggaaaaagg caatatcagc cgttatgaaa tgtaccgtac tttcaactgc ggtgtcggaa
    15241 tggtgatagc cttacctgag agagatgtcg aaaaagccct tactcttctt aaagagagtg
    15301 gtgaaaatgc gtggcttatc ggtaaaattg aagacttagg caccggtagc gagcaagttg
    15361 aaatccgcta atttgcaaaa taaatgctaa aattgaccgc ttgtagtaac tgatctgcaa
    15421 acggttaaat ttttattgag gaatgcaaat gcaactattt tggcctatct actttgtctt
    15481 aatgaaccta gctgccttat atttaatgta tagtgacaaa caaaaagcga tcaaaaaaga
    15541 atggcgagtg ccagaaatta ctctcctctc tttttgcctc ttaggtgggg ctatcggtgt
    15601 ttacctaggt atgaaatact ttcgccataa aacccaacat tggtatttcc acgtcgctgt
    15661 tgtgctttct acttttgctt ggctgattgg cttgccttac ttttatttag ctttatcatc
    15721 atattaattt atcattactt tttttaatcc gaa
//
LOCUS       DANLZD010000057        15642 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.057, whole genome shotgun sequence.
ACCESSION   DANLZD010000057 DANLZD010000000
VERSION     DANLZD010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15642)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15642)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15642
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.057"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(199..1074)
                     /gene="ubiA"
                     /locus_tag="PXE26_001279"
     CDS             complement(199..1074)
                     /gene="ubiA"
                     /locus_tag="PXE26_001279"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HDL5593867.1"
                     /translation="MNNETLFSKQKWIAYAQLMRFDKPIGTLLLLHPTLWALFIAAEG
                     MPPVAILAIFTLGVIVMRAAGCVINDYADREIDGHVKRTSQRPLATGRVTTTEAKVIF
                     AILLLFAFLLDLMLNRYAFLLSFVAVFLAVIYPFMKRFTHLPQVVLGMAFGWSIPMAF
                     GAVTETLPLECWLLFFANLAWTVAYDTQYAMVDRDDDLRIGVKSTAILFAQYDNKIIA
                     LLQFITLILLGLLGVVKDYHIGYFVVLALSATLFIYQCWLTKKRERSECFKAFLNNHY
                     FGLGVFVAILVGIYF"
     gene            complement(1067..1828)
                     /locus_tag="PXE26_001280"
     CDS             complement(1067..1828)
                     /locus_tag="PXE26_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family transcriptional regulator"
                     /protein_id="HDL5593868.1"
                     /translation="MKQANRHKKIIELVNQLGYVSTEQLVAELNVSPQTIRRDLNEMA
                     ENNLIRRHHGGAAAPSNTENSDYTHRKQFFSHEKNAIAQQVAKLIPNGASLFLDIGTT
                     SEAVALALLSHKNLKVVTNNLNAAHILMQNEDCQITVAGGGLRSDGGLIGEETVRFIN
                     QFRLDFGILGISAVDMDGSMLDYDYHEVQVKRALMECSRQVVLVTDHSKFTRTAIARL
                     GNVKEVNYLFTDQDLPLELQTHLSQSDVIVKICNE"
     gene            complement(1895..3262)
                     /gene="purB"
                     /locus_tag="PXE26_001281"
     CDS             complement(1895..3262)
                     /gene="purB"
                     /locus_tag="PXE26_001281"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDL5593869.1"
                     /translation="MELTALTALSPIDGRYQDKVASLRPIFSEFGLLKFRVTVEVRWL
                     QKLASHTQINEVPVFSEKANDYLNQIVADFSLEDANRIKTIERTTNHDVKAVEYFLKE
                     KCEALPELQAVNEFIHFACTSEDINNTSHALMLKTAREEVLLPEWKKVIDAVAELAKC
                     YQHIPLLSRTHGQPASPTTMGKEMANVAYRLQRQYKQLENLEILAKINGAVGNYNAHL
                     SAYPEIDWHTFSQEFVESLGVTWNPYTTQIEPHDYIAEFFDCVARFNTILIDFDRDMW
                     GYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGQKLPISRWQ
                     RDLTDSTVLRNLGVGLGYALIAYASTLKGISKLEVNEQHLRDELNQNWEVLAEPIQTV
                     MRRYGIEKPYEKLKELTRGKRVDETAMREFIDKLEIPENEKNRLKEMTPASYIGYAVE
                     LVDKL"
     gene            complement(3296..3925)
                     /gene="hflD"
                     /locus_tag="PXE26_001282"
     CDS             complement(3296..3925)
                     /gene="hflD"
                     /locus_tag="PXE26_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high frequency lysogenization protein HflD"
                     /protein_id="HDL5593870.1"
                     /translation="MADYHDITLAYAGVCQAATLVQQFAHKGMADREAFKCALESLLI
                     TQPESTLSVFGDDLSHLKMGLETALAQTGGGNGKLDTEVGRYWISLLALSQKLNKNPE
                     AKQQLAQRLQQVERQLALYEDNVMADQMIANLAAIYSDIISPLGTKIHVMGMQDYLVR
                     PDIQNKIRASLLAGIRAGILWQQVGGSRWQFLFSRKKIFNQAQKFYRQI"
     gene            complement(4057..5721)
                     /gene="cydC"
                     /locus_tag="PXE26_001283"
     CDS             complement(4057..5721)
                     /gene="cydC"
                     /locus_tag="PXE26_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter ATP-binding
                     protein/permease CydC"
                     /protein_id="HDL5593871.1"
                     /translation="MKSLFPFFALYQTHFGRLLLGVVLAILGLAASIGLLSLSGWFLA
                     ASFLAGNALIFNFFYPSSGVRGLAVGRTISRYFERLVTHDATFRVLANLRASVFKKLI
                     PLSPSGLNRFRNSELLNRLVADVDTLDTLYLNLVSPFVSAVMIIAFMAIGLSFVSVPL
                     MLIICGTLLVLLAVIPTVFYRLGLKLGRNAIQSRANYRSQFIEWVQLNAEFLLFGNLN
                     QMSEKLQQTEQQWLNAQSKESRLSGLSNSLIMLSNGILTCVVIYLVSTSINVPTAKYP
                     EALIALVIFCVMASAEILSPIGIAFLHLGQVITAAERISEITEQQPNVTFGSKAEWQN
                     LSQNQPLVRCENVSFAYYGEQNVLNNLSFKVLKGQKVAILGKTGSGKSTIFQLLNRNY
                     DPTSGQIWLNNCKIDEYSEPMLRSKLVTLSQRVHIFSQTLKDNLLMGNAQATDEQMQE
                     AVRKVGLGHLLETDGLNLWLGEGGRPLSGGEQRRLGLARLLLSSAELVLLDEPTEGLD
                     RETEQQILNLILTHCCDRTLIMITHRQSGLDKFDVVYRIDNGRLVG"
     gene            complement(5721..7487)
                     /gene="cydD"
                     /locus_tag="PXE26_001284"
     CDS             complement(5721..7487)
                     /gene="cydD"
                     /locus_tag="PXE26_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter
                     permease/ATP-binding protein CydD"
                     /protein_id="HDL5593872.1"
                     /translation="MEKQRQRELQKWLKSQQKVIKKYMHLNILLGSFSSLCMIGQMWL
                     IATMLDKMLIGKQSPNSFLVEIMLLFCCFAARAFFIFLRERVGFKAGQTLRLHLRRQI
                     LAKMEAVGPMSIQQKPAGSWATLMLEQVENLHNFYARYLPQQFLSLIVPLLILCFVFP
                     INWAAGAILFATMPLLPLFMILAGMKAVEANQRNIGILSRISGQFLDKLKGLETIRLF
                     GQAEKQTEQIYQSTEDFRISTMDVLKMAFLSSAVLEFFTAVSIAVTAVYFGFIFLGEL
                     DFGYYGTGVTLFIGFFCLMVAPEFYQPMRELGVFYHDKAAAISAADNIETFLKEKVKT
                     QGGNLQENVENQPLVIQAKDCVIFSPQGKALTQALNFELNAHQHIALVGQSGAGKSSL
                     MNMLLGFLPYEGSVTINGTELRDLNLSQWRAKLAWVGQNPQLMHGSLKENILIGNPNA
                     TDSELAKALQLSKADEFVARLGLEHQVQDSNIGISGGQAQRIAIARALLRPYELLLLD
                     EPTASLDMDSEQQVLAALHNLSREQTTLMITHRVEDLTQCDEIWVMKQGQIIQKGRFT
                     ELEHTGFFAELIHNELVHQGEI"
     gene            complement(7602..11699)
                     /locus_tag="PXE26_001285"
     CDS             complement(7602..11699)
                     /locus_tag="PXE26_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB"
                     /protein_id="HDL5593873.1"
                     /translation="MTDENKQTATNQTDSAQEPQATQPKKSKWRFLKHGFCLTFILLL
                     LAILFLCTGYGQRKVLSWVDKFVEPLQLGQVQGSLQDGLQLSDARFVMDGVNVTVGQA
                     DLHIGFSCLLHYEMCLNNLSLKDTEVLIDTTKLPPSQPKEETEPFTELNLPLGISAQN
                     INLENIKVKVDDMDIHLNHFHTALSGKGRAITVHPTQLEGLNLLLALKLDETDTEQAV
                     DFAQKNAKTEALSATNPQEIADKVIQEAVEKTSEKVVEGFHQLQRKTVAQAEQVDNKV
                     DWAAIKAQLAQPLLDKNIRFSLPLDLNIEQIDIANVAIAQKAKDEKGNLIEPISLLNV
                     ASLQLQAQAKDQHINLKSLDFKSDQGDLTASGSLSLQDNYPLSWTLSGHEAKTAKVKL
                     PFNQIEASLSGELYDKTSLKVKTAGAISASLEGNVALAQAKTPFDLSLKSESMRYPFA
                     PQQNGDVLSLENIAMRLNGNLLDYALEAKVSAKGMGVPASSASLTGKGELTHFNIQDL
                     SLNTLEGTAKIDGLVDWSEGVAWRSNLKLQHINTKSLLADWPAVLSGSLSSEGYAGRG
                     NSASGWKADVSNIDIKGSLLQKNLHLSGNLKADHQQLLDVPGLSLVYGENKIDLKGVL
                     GEKSDFYADIKAPNLQGLVPNLKASVNGNAKLSGKVSEPNIDLDLVASNVGYEQFKLQ
                     NLTAKGKITTEKTIQGDLTLGLRQFAYNEIKVGNATLLLKGNEENHSLKLSAKGNPVG
                     ADLQISGKFDRLKEIWEGQLSQVSIQSTEFGQFQADKAVNVKYDNKAINANISAHCWH
                     NRKINLCFPTAFNAGVEGKVPFEIRNFDLAVLQQFLEKNSQLSGIVNAKGDAAWFKNK
                     QPQVNLDLTSNAIKFIQKMEGGKSFPLTVSPLKIDLKMSDNNLTLKSDLRVENNGRLS
                     TDLVMKDLSKARALSGNIHLDQLSLKLIRPLLERGDSVDGNVNARLTVSGTATSPLLH
                     GNLNVTELKARSVTMPFDITGGNLAMNFHGATSTLSGKLQTKQSELRLEGDADWRDLN
                     AWKTRVHAQANRFQVDIPNIAKVAVSPDIQVTATPTLLTLSGNVDIPWERIEVEQLPE
                     SAVSVSGDEVIMDGSVKNKVPFSQRNIPAQTSGGMAINADIKINIGNDVKLKAYGLNS
                     NVNGLLSVRQGKQGLGLYGQVHLREGRFAAYGQDLLIRKGDISFAGSPSQPTLDIEAI
                     RNPEAMEDPTITAGVRVTGLADNPTVKVFSDPAMSQNEALSYILTGRSLESSGDTSSS
                     NAVAAALLSMSLSKSSKLVGDVGSTFGLKDLSVTTAGIGDNTKVEVSASLAPKFRVKY
                     GVGIFAPLTELTLRYNLTPRLYLQWVSSINQAVDLMYRFEFDELF"
     gene            complement(11780..13615)
                     /locus_tag="PXE26_001286"
     CDS             complement(11780..13615)
                     /locus_tag="PXE26_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor"
                     /protein_id="HDL5593874.1"
                     /translation="MNTKLHFLTFCCLVAFASMAQANQEQRLSDVDRERVENLQEKLA
                     EDSDDEPEIEPLVTLEVKGIQGKDAKKNVELYLDQIANEYADGSERYQYLVQTTVDKA
                     LRALGYYNSRYQFVQLPQEGKKPLLVLNVELDKETVKIDETDIVLQGDAKTDEDFAHL
                     VSKAPKQGSRLNHKTYDNFKGDIESTAFSKGYFDGHWLYHRLEVYPTDHKADWRLGYD
                     SGKRYHYGQIRFVDSQIKEEYLQNILKIHSGEPYLANDLSILTQDYLSSNWFSSVMVE
                     PHLNEQDKLVDLNVLFQPKKRNEVEIGIGYETEVGPRLQLNWKKPWLNSRGHSIESRT
                     YVSKPEQTFEFGYNIPLREDPLHYYYQLSGTLENEDQNDTKSTAATLGLQRFWTHETG
                     WSFSVGLKARYDSFTQANDRFKTLLVYPTASLNRTRTDGKPYPLWGDTQKLTVNWGSR
                     AVGSDVNFYSYKASTSWARTYFDNHRFYLRAELGYLKANQFERIPPALRYFAGGDMSV
                     RGFGYKDISPRDPSNGKRVGGSHLATGTVEYQYQVYPNWWGAIFYDAGLASNKFKTQD
                     LYYGTGLGVRWASPIGAIKFDVATPVKSPDNSKGIQIYIGLGSDL"
     gene            complement(13627..14472)
                     /locus_tag="PXE26_001287"
     CDS             complement(13627..14472)
                     /locus_tag="PXE26_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HDL5593875.1"
                     /translation="MFKQINKRLNFNIFLQMFVLFTPLVQAAQMAIVIDDVGYRIKED
                     REILALPKAVSVAIIPVAPYATERAKDAYNQKRDILIHLPMEPKSKQPIEEGGIHIGD
                     NEEKIRKLIHTSRGQVPYAIGLNNHMGSGATSDSATMQHLLKVLKENTLFFLDSKTIG
                     SSVAAKTARQFGINTLERDIFLDDSDLLADVQKQFAHAINHARKNGVAVVIGHPRKNT
                     ISVLKQNLAQLPQDIELVSVGNLWRNEKTVPDKPFIMLFEQEPALSSVPPYDSIPLLR
                     GIPKE"
     gene            complement(14473..15636)
                     /locus_tag="PXE26_001288"
     CDS             complement(14473..15636)
                     /locus_tag="PXE26_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDL5593876.1"
                     /translation="MLVKRINSYCWTAIFSGVISFSTPFSFANNLNQIQQKIQQQTSK
                     INEQKQKRNALQSTLKNQEVEMGKVLDKLQKTEMSLTEVRQTIKATETEIARLEKLEK
                     QQKEKLKEQLDSAYRSGVNPSVLERLMSEEAKNAERMTAYYQHMNNIRIDAIVEIRKT
                     QADLKARRDELKGQQKDHQTQLNEQKKQEKDLKKVQSQRESTLRLIDKTLEQDQSRLE
                     NLRSNEQALKQQLEQAQREAQQAEKREQQREKQAKSGQSKTTENVERTPIKAGRYTMP
                     VSGNIITPFGNNWHGVVIGASAGTSVRAMASGRVIMAQWLAGYGNMVAIDHGNGDISL
                     YGYNQSISVSKGSRVQGGQVIAKVGNSGGQSRSALYFGVTRKGTPINPLNLVK"
BASE COUNT         4376 a         3518 c         2929 g         4819 t
ORIGIN      
        1 gtaatgtccc ttttttgaat gtctactaca aaatgggata ttttacaaac cgattgacta
       61 atgaagcaag aatataatta actacaactg gatatatttt gcaaatttcc cgataaattt
      121 caccgcttgt agataaaaac cgtagataaa aaccatagat aaaaaatagg agctaaacat
      181 ttttagcccc taccgtcatc agaaataaat cccgactaaa atcgccacga acacacctaa
      241 gccgaaatag tggttattta gaaacgcttt aaagcattcg ctacgttctc tttttttggt
      301 cagccaacat tggtagataa acagcgtggc acttaaggct aatacgacaa aatagccgat
      361 gtgataatct tttaccacgc ccaataaccc caataaaatc aaggtgataa actgtaataa
      421 cgcaataatt ttattatcgt attgagcgaa taaaattgca gtggatttaa ctccaattcg
      481 taaatcatcg tcacgatcaa ccattgcata ttgggtgtcg taggcgactg tccacgctag
      541 attggcaaaa aacagcagcc agcattcaag tggaagagtt tccgttaccg caccaaatgc
      601 catcggaatc gaccaaccga atgccattcc aagcactact tgtggcaagt gggtaaaacg
      661 cttcataaag ggataaatca ccgccagaaa aactgccaca aaggaaagca gaaacgcata
      721 gcggtttagc attaaatcga gcagaaaagc gaacaacagc aagatggcaa aaatgacttt
      781 tgcctcagtg gtggtcactc tgccggtagc taatgggcgt tgagaggtgc gtttaacgtg
      841 tccgtcaatt tctctatcgg cataatcatt aatcacacaa cctgccgcac gcataacgat
      901 taccccaagg gtaaaaatgg ctaaaatcgc aacaggcggc attccctctg cggcaataaa
      961 taacgcccat agtgtggggt gtaataataa taacgtgccg atgggtttat cgaaacgcat
     1021 taactgggcg taggcaatcc atttttgttt agaaaaaaga gtttcgttat tcattacaaa
     1081 ttttgacgat aacgtccgat tggcttaaat gagtctgtaa ttctaacggt aaatcttgat
     1141 ctgtaaacaa ataatttact tctttaacat ttcctaaacg tgcaatagct gtacgggtaa
     1201 actttgaatg atcggtcact aaaaccactt gtcgggaaca ttccattaat gcacgcttta
     1261 cctgcacttc gtggtaatcg taatcgagca tagagccgtc catatccacc gcactaatgc
     1321 ctaaaatccc aaagtccaaa cggaattggt taataaagcg aaccgtttct tctccgatta
     1381 gcccgccatc acttcttagc cctccgcctg ctaccgtaat ttggcaatct tcattttgca
     1441 tcagaatatg agccgcattt aaattattgg taactacttt taaattttta tgcgaaagta
     1501 aggctaatgc cactgcttct gaagtcgtgc caatatctaa aaataatgat gctccatttg
     1561 gaatcagttt tgccacctgt tgggcaatcg catttttctc gtgtgagaaa aattgcttgc
     1621 ggtgggtgta atcactattc tccgtattgg aaggagcggc tgccccaccg tgatgacggc
     1681 gaatcagatt attttctgcc atttcattca gatcacggcg aatggtttgc ggactcacat
     1741 tcaattcagc cactaattgc tcggtactca catagccaag ctgattaacc agctcaatga
     1801 tctttttgtg tctgtttgcc tgtttcatat ttcctctttt gcaaataatt tgcagaaaaa
     1861 gaccgcttgc aagcggtctt ttttcagtta aattttacaa tttatcaaca agttcaaccg
     1921 catagccgat atagcttgcc ggtgtcatct ctttcaaacg atttttttca ttttccggaa
     1981 tttccaactt atcgataaac tcacgcattg cggtttcatc aacccgtttg cctcgagtca
     2041 gctctttaag tttttcatac ggtttttcaa tgccataacg acgcataaca gtttgaattg
     2101 gctctgccaa tacttcccag ttttggttga gttcatcacg caagtgttgt tcattcactt
     2161 ctaatttgct aatacctttt aaggtggacg cataagcaat taacgcataa cctaaaccta
     2221 cacctaaatt acgcaacacg gtggagtcag ttaagtcacg ctgccagcga gaaatcggca
     2281 atttttgccc caaatgagcc attaccgcat ttgccaagcc aagattgcct tcggaatttt
     2341 caaaatcaat cgggttcact ttatgtggca ttgtgctaga gccgatttca ccggcaatag
     2401 tgcgttgttt gaagtgattt aaggcaatgt agccccacat atcacgatca aaatcaatta
     2461 aaatcgtatt aaaacgagcc acgcaatcaa agaactccgc aatataatcg tgcggttcaa
     2521 tttgggtggt gtatgggttc cacgtcacac ctaacgattc cacaaattct tggctgaaag
     2581 tgtgccaatc aatctccgga tatgctgata aatgtgcgtt atagttgccc actgctccat
     2641 tgattttagc gagaatttct aaattttcta actgtttata ttggcgttgt aaacgatatg
     2701 ccacatttgc catctcttta cccattgtgg tcgggcttgc cggctgaccg tgtgtgcgag
     2761 aaagcaacgg aatatgttgg taacatttcg ccagctctgc tacagcatca atcacttttt
     2821 tccattcagg taataatact tcttcacgag cggttttaag cattaaagcg tgcgaagtat
     2881 tattgatatc ttcagaagta caagcaaaat gaataaattc attcaccgct tgtaattcag
     2941 gcaacgcttc acatttctct tttaggaaat actccaccgc ttttacatcg tggttggtgg
     3001 tacgttcaat cgttttaatc cgattggcat cttctaacga aaaatcagcc acaatttggt
     3061 ttaggtaatc gtttgctttt tcagaaaaca ctggaacttc attaatttgt gtatgcgatg
     3121 ccaatttttg taaccagcga acttccaccg tcacacggaa ttttaataag ccaaattcac
     3181 taaaaatcgg acgaaggctc gcaactttgt cttgataacg tccatcaatc ggggataacg
     3241 cagttaaagc ggtaagttcc attgttttat attctccaaa taggtaaatg ttcggttaga
     3301 tttgacgata aaatttctgt gcttggttaa aaattttctt gcgtgaaaat aaaaattgcc
     3361 aacggcttcc gccgacttgc tgccacaaaa taccggctcg aataccggct agtagcgagg
     3421 ctcgaatttt attctgtata tccgggcgaa ccaagtaatc ttgcattccc atcacgtgaa
     3481 ttttcgtacc taacgggctg ataatatcgc tataaatagc ggctaaattg gcaatcattt
     3541 gatctgccat cacattatct tcatacaggg ctaactggcg ttccacttgc tgtaaacgct
     3601 gggctaactg ttgttttgct tcagggtttt tattgagttt ttggctaagg gcgagcaggc
     3661 ttatccaata acgtccgact tcggtatcta atttgccgtt accgccgcca gtttgagcta
     3721 atgcggtttc taagcccatt tttaaatggg aaagatcatc gccaaataca cttaacgttg
     3781 attccggctg agtgattaac aggctttcta aagcacactt aaaagcctct ctgtctgcca
     3841 tgcctttatg tgcaaattgt tgcactaacg tcgccgcttg gcaaacgccg gcataagcaa
     3901 gggtaatatc gtggtaatcc gccatctctg taaaattcaa tatgataaaa cattagtggg
     3961 aatatagcat tttttcagct tcttttgaat ggcaaaaggc atttattcta ttgaaaaata
     4021 aatgcctttt cattaatacg caatttgctg caaaaactat cctaccaatc gcccattatc
     4081 tattcgataa accacatcaa atttatccag tccgctttgg cggtgagtga tcataattaa
     4141 ggtgcgatca cagcagtgag tcaaaattag gtttaaaatc tgctgttcgg tttctctgtc
     4201 cagtccttct gttggctcat caagtaagac taattcagca gaactcagga gcaaacgggc
     4261 aagccctaaa cggcgttgtt cgccaccaga aagcggtctg ccgccctcgc ctaaccataa
     4321 atttaagccg tctgtttcaa gcaaatgccc taagcctact tttcttactg cttcttgcat
     4381 ttgttcgtct gtagcttgag cattccccat taataaatta tcttttaggg tttggctaaa
     4441 aatatgcact cgttggctta aggtaactaa ttttgagcgt aacatcggct ctgaatattc
     4501 gtcaatttta caattattca gccaaatttg accgcttgta gggtcgtagt tgcggtttaa
     4561 cagttggaat atggtcgatt ttccgctacc cgttttacct aagattgcca ctttctgccc
     4621 ttttaatacc ttaaaggaaa gattatttag tacgttttgc tcgccgtaat aagcaaagct
     4681 cacgttttca cagcgtacaa gcggttgatt ttggctcaaa ttttgccatt ctgccttgct
     4741 accaaatgtt acattaggct gttgttcggt aatttcacta atccgctcgg cggcggtaat
     4801 cacttgccct aaatgcaaaa aggcgatacc aatcggggaa agaatctccg ccgatgccat
     4861 tacacagaaa atcactaacg caattaaggc ttcagggtat tttgcagtgg gcacattaat
     4921 cgaagttgaa accaaataga tcaccacaca agtcaaaatg ccgttggata acattatcaa
     4981 gctatttgat aagccggaca gtcggctttc tttgctttga gcgttcagcc attgttgttc
     5041 agtttgctgt agtttttcgc tcatttggtt caagttgcca aagagtaaaa attctgcatt
     5101 taactgtacc cactcaataa attggctgcg gtaatttgct cggctttgta ttgcattacg
     5161 ccctaatttc aaacccaatc gataaaatac ggtaggaata acggcaagca ataccaatag
     5221 tgtgccgcaa atgatcagca ttaatggcac ggaaacaaaa gaaagcccga ttgccataaa
     5281 tgcaataatc atcactgcac tgacaaaagg cgagactaaa ttcagatata gggtgtctaa
     5341 cgtatccaca tctgccacca agcggtttaa caattcgctg tttctaaagc gatttagccc
     5401 gcttggactc agtggaatca attttttaaa gacgctagca cgcaaattcg ccaatacccg
     5461 aaaagtcgca tcgtgggtga ctaaacgttc aaagtaacgt gaaattgtcc gccctactgc
     5521 caaccctctc acccccgatg aagggtagaa aaagttaaaa ataagcgcat tgccggctag
     5581 aaatgaggca gctaaaaacc aaccggaaag gctgagcaaa ccgatacttg ccgctaatcc
     5641 taaaattgcc agcacaacac ctaataatag tcgcccaaaa tgggtttggt agagagcaaa
     5701 aaacgggaac aacgatttca ttagatttct ccctgatgca ctaattcatt atgtattaat
     5761 tccgcaaaaa agccggtgtg ttctaattca gtgaaacgac ctttctgaat gatttgccct
     5821 tgtttcatca cccaaatttc atcgcattgg gttaaatctt ccactcgatg agtaatcatt
     5881 agcgttgttt gctctcggct gagattatgc agagcggcta acacttgctg ttccgaatcc
     5941 atatcaaggc ttgcagtcgg ctcgtctaac agtaataatt cgtacgggcg aagcaacgct
     6001 cgtgcaatcg caatccgctg tgcttgcccg ccagagatac cgatattact gtcttgcact
     6061 tgatgctcca accctaaacg tgccacaaat tcatcggctt ttgaaagctg taatgccttg
     6121 gctaattcag aatctgtcgc attagggttg cctattaaaa tattctcttt caaactgcca
     6181 tgcattaatt gcggattttg ccccacccac gctaatttcg ctcgccattg gcttaaattt
     6241 aaatctcgca gttcggtgcc gttaatcgta accgaccctt cataaggcaa gaaaccaagt
     6301 aacatattca ttaatgaact ttttcctgca ccactttgcc caaccaaagc gatatgttgg
     6361 tgtgcattca actcgaaatt taacgcttgg gttaaggctt tgccttgtgg tgagaagatc
     6421 acgcaatctt tggcttgaat cacaagcggt tgattttcaa cattttcttg caaattgcca
     6481 ccttgcgttt tcaccttttc ttttaagaaa gtttcgatat tatctgcggc actaatcgct
     6541 gctgccttgt cgtgataaaa cacgccaagt tcacgcatcg gttggtaaaa ctcaggtgcc
     6601 accattagac aaaagaagcc gataaataag gtcacgcccg taccataata gccaaaatcc
     6661 agctcaccta aaaaaataaa gccaaaatag accgccgtca ccgcaatcga taccgccgtg
     6721 aaaaactcca ataccgcaga ggataaaaac gccattttta gtacgtccat cgtactgatt
     6781 cggaaatctt cggtgctttg gtagatttgt tcagtctgct tttccgcttg cccaaataag
     6841 cgaatggttt ctaaaccttt taatttatct aagaactgtc cgctaatacg ggaaagaatg
     6901 ccgatattac gctgatttgc ctccactgct ttcattccgg ctaaaatcat aaataaaggt
     6961 aataatggca ttgttgcaaa taaaatagcc cctgctgccc agttaatcgg gaatacaaaa
     7021 cagaggatca gtaatggcac tatcagcgat aaaaattgct gtggcaaata gcgtgcgtag
     7081 aaattatgta gattttccac ctgctcgagc attaaggttg cccagctgcc cgccggtttt
     7141 tgttgaatgc tcatcggccc gactgcttcc attttggcta gaatttggcg gcgaagatgt
     7201 aaacgcaagg tttgccctgc tttgaaaccg acacgctcac gcagaaaaat gaagaatgct
     7261 ctggcagcaa aacaacagaa taagagcata atttcaacca gaaagctatt cggtgactgc
     7321 tttccgataa gcattttgtc taacattgtg gcaatcagcc acatctgtcc aatcatacat
     7381 aaactactga aactccctaa cagtatgttt aagtgcatat attttttgat gactttttgc
     7441 tgacttttaa gccatttttg taattcgcgt tggcgttgtt tttccataat tttgtcaatt
     7501 tttttgtttt ttcaaccgct tgtaaatcgg gtttgccatt ctactataaa gcaaaaaggt
     7561 tgttaatggc gaaacattaa caacctttca ttcagcctta actagaatag ctcgtcaaat
     7621 tcaaagcgat acattaaatc taccgcttgg ttaatacttg agacccattg taagtacaat
     7681 cttggcgtta aattatagcg taaggttaat tcggtaagcg gtgcaaaaat gcccacgcca
     7741 tacttcactc tgaatttagg ggcaaggctg gcacttactt ctactttggt gttatcgcca
     7801 atacctgcgg tggtcacgct taaatctttg agtccgaaag tgctaccaac atcacccacc
     7861 aatttactgc tttttgataa gctcatactg agtaatgccg ctgcgactgc attactggag
     7921 ctggtatcgc cactgctttc caatgaacga ccagttaaaa tataggaaag tgcttcattt
     7981 tgcgacattg ccggatcaga gaatactttt accgttggat tgtctgccaa accggtcact
     8041 cttaccccag ctgtaatggt cggatcttcc attgcctccg gattgcgtat agcttcaata
     8101 tctaaggttg gctgagacgg tgagccggca aaactaatat cacctttacg aatcagcaag
     8161 tcttgaccat aagcggcaaa tcgtccttca cgcaaatgaa cttgcccgta aagccctaaa
     8221 ccttgtttgc cttgcctgac agacaataag ccattcacgt tactgtttaa accataggct
     8281 ttgagtttga catcattacc gatgttaatc ttaatatctg cattaattgc cattccacct
     8341 gaggtttgag ccggaatatt acgttggcta aacggcactt tatttttcac agagccgtcc
     8401 ataatcacct catctccact tacactgacc gcactttcag gtaactgctc gacttcaatt
     8461 ctttcccaag ggatatctac atttccactt aaggttaaaa gagttggcgt tgccgtcact
     8521 tgaatatccg ggctaactgc cacttttgcg atattaggaa tatccacttg gaaacggtta
     8581 gcttgagcgt gaacccgtgt tttccacgca tttagatctc gccagtctgc atcaccctcc
     8641 aaacgcagtt cgctttgttt ggtttgtaat ttaccgctta aagtcgatgt tgccccgtgg
     8701 aaattcattg ctaaattccc acctgtaata tcaaacggca ttgtaacaga gcgagctttt
     8761 aactctgtaa cgtttagatt tccgtgcaat aacggagagg ttgcggtgcc gctcacggta
     8821 agacgagcat tcacattgcc atcaaccgaa tcgccccgtt caagtagcgg tcgaatcagc
     8881 tttaagctta attggtcaag atgaatattg ccggataacg cacgagcctt acttaaatct
     8941 ttcatcacta aatcagtcga aagtctgccg ttattttcga cccttaaatc agatttaagg
     9001 gttaaattat tgtcagacat tttcagatca attttaagcg gtgaaacggt gagtgggaaa
     9061 ctttttcccc cctccatttt ttgaataaat ttaatcgcat tagaggttaa atccagattc
     9121 acttgaggct gtttgttttt aaaccaagct gcatcgcctt tggcattcac aatccctgaa
     9181 agctggctgt ttttctccaa aaattgttgc aataccgcta aatcaaagtt acggatttca
     9241 aaaggcactt taccctcaac accggcatta aatgcagtcg ggaaacaaag attaattttc
     9301 cggttatgcc aacaatgtgc ggaaatattg gcgttaatgg ctttattgtc atatttcaca
     9361 ttcactgctt tatctgcttg gaattgacca aactcggtgg attgaatcga aacttggctt
     9421 aattgccctt cccaaatttc tttcaaacgg tcaaattttc cagaaatttg caaatcagca
     9481 ccaaccggat tgccttttgc acttaatttc aagctatgat tttcttcatt tccttttagc
     9541 aataaagtgg catttcccac tttgatttca ttataggcaa attgacgtaa ccccaaggtt
     9601 aaatcccctt gaatggtttt ctcagtggta attttgcctt ttgcggttaa attttgcagt
     9661 ttaaattgct catagcctac atttgaggcc actaaatcta aatcaatgtt aggttctgaa
     9721 accttacccg ataatttggc attaccattc acgctggctt ttaaattcgg cactaaccct
     9781 tgcaaattag gggctttaat atccgcatag aaatcagatt tttcgcctaa cacgcctttt
     9841 aaatcgatct tattttcacc atacaccagc gataagcccg gaacatctaa aagttgttga
     9901 tgatcggctt ttaaattacc gcttaagtgt agatttttct gtaataacga acctttaata
     9961 tcaatattcg agacgtccgc tttccatccg ctagctgaat tgccccgtcc tgcataacct
    10021 tcggaagata aagaaccgga caataccgcc ggccagtctg ccagtaggga tttagtgtta
    10081 atatgctgaa gtttcaaatt tgaacgccac gcaacgccct cgctccaatc cactaaaccg
    10141 tcgatcttcg ccgtaccttc cagcgtattg agacttaaat cttgtatatt aaaatgggtt
    10201 aattcccctt tgccagttaa actagccgag cttgcaggca cgcccattcc tttggcactg
    10261 actttagcct ccaaagcgta atccaggaga ttgccattaa gcctcatggc gatattctct
    10321 aaactcagca catcaccatt ttgctgagga gcaaacggat aacgcattga ctcactcttc
    10381 agcgataaat caaagggagt tttcgcctga gccagtgcaa cattgccctc caacgaggcg
    10441 ctaattgcac cagccgtctt cacttttagg ctggttttgt catatagctc accggaaaga
    10501 gaggcttcaa tttgattgaa cggcaatttt actttcgccg tttttgcctc gtgaccactt
    10561 agcgtccaac ttagcggata attatcttgt aacgataaag aaccgcttgc ggttagatcc
    10621 ccttggtcgc ttttgaaatc taaacttttt aggttgatat gctgatcttt tgcttgagcc
    10681 tgaagctgta aagaggcaac atttaacaat gagatcggct caatcaaatt ccctttttca
    10741 tctttagctt tttgagcaat cgctacattc gcaatatcaa tctgttcaat attgagatca
    10801 agaggcaaac taaagcgaat atttttatcc aataacggct gtgctaattg tgctttaatc
    10861 gctgcccaat ccactttatt atccacctgt tcggcctgtg caacagtttt tctctgtaat
    10921 tggtgaaagc cctctacgac tttttcactg gttttttcca ccgcctcttg aatcacttta
    10981 tcagcaatct cttgtggatt tgtcgctgat aacgcctctg tttttgcatt tttttgtgca
    11041 aaatcgaccg cttgttcagt atcagtttcg tctaacttta aggctaaaag cagatttagc
    11101 ccctctaact gtgtcgggtg aacggtaata gcccgccctt taccagaaag tgcagtgtgg
    11161 aaatgattaa gatgaatatc catatcatca actttgacct tgatattctc taaattgata
    11221 ttttgagctg aaatccccaa tggcaaattt aattcggtga aaggttcggt ctcttctttt
    11281 ggctgagaag ggggtaattt agtcgtatca atcaacacct ctgtatcttt aaggctgaga
    11341 ttattcaaac acatttcata gtggagcaag cagctaaaac caatatgcag atctgcttgc
    11401 ccaaccgtta cattcacacc gtccatcaca aatcgggcat cagaaagctg taacccatct
    11461 tgcaggctac cttgcacttg cccaagttgt aatggctcta cgaatttatc tacccagctt
    11521 aacactttac gttgcccgta acctgtgcat agaaagagaa tggcgagtaa aagtagaata
    11581 aacgtcagac aaaagccgtg cttcaaaaac cgccactttg attttttagg ctgtgttgct
    11641 tgtggctctt gtgctgagtc cgtttgattt gtggctgttt gtttattttc gtcagtcata
    11701 atcgtgcata tttatgaggt gataaaaagt aaacaagcgg tatgcgaaat tttactgaaa
    11761 ttcgaccgct tgttttcatt tacagatcgg aacctaaacc aatataaatt tgtattcctt
    11821 tggaattatc tggtgatttt accggcgtgg cgacatcaaa tttaatcgcc ccgataggtg
    11881 atgcccaacg cacccctaag cccgtaccgt agtagagatc ctgagttttg aatttattcg
    11941 atgccaagcc tgcatcataa aaaattgcac cccaccaatt agggtaaacc tgatactgat
    12001 attctactgt gcctgtggct aaatgagagc ctccgacacg tttgccatta ctcggatcac
    12061 ggggggaaat atccttatag ccaaagcccc gcacactcat atcgccaccg gcaaaatagc
    12121 gtaacgccgg tggaatacgt tcaaattgat tggctttcaa ataccccaac tccgccctta
    12181 aatagaaccg atggttatca aagtaagttc tcgcccaaga tgtcgaggct ttataactat
    12241 aaaagtttac atctgaacct actgcacgac tcccccagtt taccgttaat ttttgtgtat
    12301 ccccccataa tgggtaaggc ttgccatctg ttctggttcg attcaatgat gccgttgggt
    12361 aaactaataa ggttttaaat cgatcattag cttgagtaaa agaatcgtaa cgggctttta
    12421 aaccaacaga aaatgaccaa ccggtttcgt gagtccagaa acgttgtaag ccaagggtgg
    12481 cagcggttga ttttgtatcg ttttgatctt cgttttctaa agtgccggat aattggtaat
    12541 aataatgtag cggatcttct ctaagtggaa tattataacc aaattcaaat gtctgctccg
    12601 gcttagaaac gtacgttcgg ctttcaatac tatgacctcg gctatttaac caaggtttct
    12661 tccagttaag ctgtaacctt gggccaactt cagtttcgta gcctatccca atttccactt
    12721 cattgcgttt tttaggctga aataacacat ttaaatccac taatttatcc tgttcattta
    12781 aatgtggctc aaccatcact gatgaaaacc aattactgga aaggtaatct tgggttaaaa
    12841 tcgaaagatc gttagctaaa tatggctcac cggaatgaat tttaagaata ttttgcaaat
    12901 attcttcttt gatttggcta tcaacaaacc ggatttgtcc ataatggtat cgttttccgc
    12961 tatcatagcc taaacgccaa tccgctttat gatcggtcgg ataaacttcc aaacggtgat
    13021 aaagccaatg accgtcaaaa taccctttac taaaagcggt actttcaata tcacctttaa
    13081 aattatcata ggttttatgg tttaaacgac taccttgttt tggggcttta ctgactagat
    13141 gagcgaaatc ttcgtccgtt tttgcatcgc cttgcaaaac aatatcggtt tcatcaattt
    13201 ttaccgtctc tttatctagc tcaacattta atactaagag cggtttcttt ccctcttgag
    13261 gtagctgcac aaattggtat cggctattat aatagcccaa ggctctcaga gctttatcta
    13321 ctgtggtttg caccaaatat tgataacgct ctgaaccatc tgcatattca ttggcaattt
    13381 gatctaaata tagctccaca tttttcttgg catctttacc ctgaatgcct ttgacttcta
    13441 aagtgactaa tggctctatt tctggctcat catcactatc ttccgctaat ttttcttgca
    13501 gattttcaac tcgctcacga tctacgtcag acagcctttg ctcttgattt gcttgtgcca
    13561 ttgaagcaaa agccactaaa cagcagaatg ttaaaaaatg tagttttgta ttcattagta
    13621 acctttttat tcttttggaa tgccacgcaa aagcggaata ctgtcataag gcggaacaga
    13681 acttaacgct ggctcttgct caaagagcat aatgaatggt ttgtcaggca ctgttttttc
    13741 attacgccac aagtttccaa cactcaccaa ttcaatatct tgaggtagtt gtgctaaatt
    13801 ttgcttcagt acactaatcg tattcttgcg agggtgtcct atcaccaccg ctaccccgtt
    13861 ttttcgtgcg tgattaattg catgtgcaaa ctgtttttgt acatcagcaa gcagatcgct
    13921 atcatctaaa aaaatgtctc tctccagcgt attaatacca aattgacgag ccgttttagc
    13981 cgccacacta ctgccaatag ttttactgtc taaaaagaaa agcgtatttt cttttaacac
    14041 tttcaacaaa tgttgcattg tagcagagtc tgaagttgct ccactgccca tatggttatt
    14101 taaaccaata gcatatggta cttgaccacg agaagtatga ataagtttcc gaattttctc
    14161 ttcgttatca ccaatatgaa tacccccctc ttcaattggc tgtttcgatt taggttccat
    14221 tggcaaatga atcaaaatat cccgtttttg gttataagcg tcctttgccc gttctgttgc
    14281 atagggtgca acaggaataa tcgccacgct taccgccttg ggtaaggcta agatttctcg
    14341 atcttctttt attcgatagc ccacatcatc aattacaatc gccatttgag ctgcttgtac
    14401 aagcggtgta aaaagcacaa acatttgcaa aaaaatgtta aaattcaacc gcttgttaat
    14461 ttgtttaaac atctatttca ccaaatttag aggattaatc ggcgtgcctt tacgggtaac
    14521 accaaaatag agtgcagaac ggctttgtcc cccactgtta ccaaccttcg caataacctg
    14581 tccgccttgc actcggctac ccttgctgac tgaaatagat tggttatagc cataaaggga
    14641 aatatcacca ttgccgtggt caatcgcaac catattgcca taccctgcaa gccattgagc
    14701 cattatgact cgcccgctcg ccattgctct aaccgaagta ccggcagaag caccaatcac
    14761 tacaccgtgc caattattac caaaaggagt gataatattg ccagacaccg gcatcgtata
    14821 tcgaccagcc ttgatcggtg ttctctcaac attctcagtt gttttggact gaccggattt
    14881 tgcctgtttt tcccgctgtt gttcacgttt ttctgcttgc tgagcctctc tttgcgcttg
    14941 ttctaattgt tgttttagtg cctgttcatt gctgcgtaaa ttctctaatc ggctttgatc
    15001 ctgctcaagc gttttatcga ttaaacgtaa ggtactttca cgctggcttt gtactttctt
    15061 taaatctttc tcttgtttct tttgttcatt aagttgcgtt tgatgatctt tttgctggcc
    15121 tttcaattca tcacgtctgg ctttaagatc agcttgggtt ttacgaattt caacgatcgc
    15181 atcaatgcga atattattca tatgctgata ataagcggtc attctttccg cattttttgc
    15241 ctcttcagac attaaacgct ctaagaccga agggttcacc ccagaacggt aggcagagtc
    15301 caactgctct tttaattttt ctttctgctg tttttccaac ttttctaaac gggcaatttc
    15361 agtctcagtc gctttaatgg tctggcgaac ttccgttaaa gacatttcgg ttttttgtaa
    15421 tttatccaac accttcccca tttctacttc ttggtttttt agggtagatt gcaacgcatt
    15481 acgtttttgc ttttgttcat taatttttga ggtttgctgt tggatttttt gctgaatctg
    15541 attaagatta tttgcaaaag aaaaaggggt agaaaagctt attaccccac tgaaaatagc
    15601 agtccaacag taagaattta ttcgtttcac cagcatacct tt
//
LOCUS       DANLZD010000058        15533 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.058, whole genome shotgun sequence.
ACCESSION   DANLZD010000058 DANLZD010000000
VERSION     DANLZD010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15533)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15533)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15533
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.058"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            263..1453
                     /gene="malE"
                     /locus_tag="PXE26_001289"
     CDS             263..1453
                     /gene="malE"
                     /locus_tag="PXE26_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005537801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter
                     substrate-binding protein MalE"
                     /protein_id="HDL5593877.1"
                     /translation="MKNKCVKFTLATLATLVLSGTVMAKMTEGKLVIWINGDKGYNGL
                     AEVGKKFEKDTGVQVLVEHPDRLEEKFAQVASTGDGPDIMFWAHDRFGGYAQSGLLAE
                     VNVSKEFKDKFVDFAWDAETYNGKIIGYPVAIEAISLIYNKDLVKEAPKSWEEIIELD
                     KKLKKEGKNAIMWNLSEPYFTWPIAASNGAYAFKFANGKYDPKDIGVNNEGAVKALQF
                     VVDMVKNKHISADMDYAVAEASFNKGQSALTINGPWSWGNIDKSGIKYGVTLLPTLNG
                     QASKPFVGVLSAGVNSSSPNKDLAKEFLENYLLTDDGLDAVNKDKPLGAVALKSYQEK
                     LAADPRIAATMANAKNGEIMPNIPQMSSFWYAEKSAINNAVTGRQSVKEALDDAHSRI
                     QKQQ"
     gene            1572..3110
                     /gene="malF"
                     /locus_tag="PXE26_001290"
     CDS             1572..3110
                     /gene="malF"
                     /locus_tag="PXE26_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalF"
                     /protein_id="HDL5593878.1"
                     /translation="MLTQTQSKSTHWLKYLLAGLVLLLDFYLVVLMYSQGEYLFAILT
                     LIILTSGVYIFTNKNTYAWRYVYPGITGMAIFILFPLVATIAIAFTNYSGSNQLSFER
                     AVSVLTEQRYFAGDKYQFTLYPQADNKYQIALTNPTTEQTFVSEPISLATGTNVVVTE
                     QNRPTGEVAPLKVITQNRAALQSMKVVLPNNNELTMSSLRQFSEQKPRYQFDEENKIL
                     LNNETGKRYQANDETGFFQSIDENGHWQSETLEPGYTVTSGFNNFIKIFTDEGIQKPF
                     VQIFIWTVIFSLLTVVFTVILGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILI
                     FKGLFNQSFGEINMILNQLFGISPEWFNDPLLAKVMILIVNTWLGYPYMMILCMGLLK
                     AIPADLYEASAMDGASTWQNFSKITFPLLLKPLTPLMIASFAFNFNNFVLIQLLTNGR
                     PDMIGTTTPAGYTDLLVSYTYRIAFEGSGTQDFGLAAAIATIIFLLVGGLALLNIKAT
                     KMEL"
     gene            3163..4053
                     /gene="malG"
                     /locus_tag="PXE26_001291"
     CDS             3163..4053
                     /gene="malG"
                     /locus_tag="PXE26_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001252048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalG"
                     /protein_id="HDL5593879.1"
                     /translation="MAIVQSKSVRYRVWATHFILICFLALIIFPLLMVIGISLRPGNL
                     AIGDIIPSQISWEHWQAALGFDVTHADGTVTPPPFPVLRWLWNSIKVATITSIGIVTL
                     STTCAYAFARMKFKGKKTILQGMLIFQMFPAVLSLVALYALFDRLGQYVPFLGLNTHG
                     GVIFAYLGGIALHVWTIKGYFETIDGSLEEAASLDGATPWQAFRLILLPLSVPILAVV
                     FILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLYPQNYLWGDFAAAAVLSAIPITL
                     VFLLAQRWLIGGLTAGGVKG"
     gene            4128..6185
                     /locus_tag="PXE26_001292"
     CDS             4128..6185
                     /locus_tag="PXE26_001292"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HDL5593880.1"
                     /translation="MKNALPYLCLFYTSSLFAQSWQHSHFSDFNDDLEKHFFQSQVQL
                     EKGSYPLRFKFGEQCYQPQQAIKLNQSVALVPCINEAPQLRLFRQGNYLAQIDLRSGT
                     PTPTISVEQQLQHNEAMFQSCPNWDKKPIEIDVSSTFAEGESVSDFYSGNTAIVKNGK
                     VTLMPNENASGLILLEKSNTENTATFDWKNATVYFVLTDRFYNGDPTNDHSYHRQKDG
                     MQEIGTFHGGDLKGLTEKLDYLQQLGVNVLWISSPLEQMHGWVGGGDKGDFPHYGYHG
                     YYHLDWTKLDANMGTEDDLSRFVQQAHQRGIRVLFDVVMNHTGYATLADMQEFNFGGF
                     YLTPDEISRTLGEKWTHWKPKSGQNWHSFNDFIRFNDNQAWQNWWGKEWVRADIADYD
                     SPKFDDLKMSLAALPDLKTESEQAVKLPEFFANKNTNAKTLPNAKVRDYLIGWLSDWV
                     RKYGIDGFRVDTAKHVEKSTWLVLKQSAQQALNEWQKANPNAGFNDRFWMTGEAWGHG
                     VFKSDYYQNGFDAMINFDFQDQAKQGLNCFAHIEPIYAEMNRKLSDFNVLSYLSSHDT
                     RLFFHSDSEQNIEKHKTAANLLLLSPGAVQIYYGDESGRTFGATGSDLIQGTRSDMNW
                     QELQQDPQKQALHQHWQKLTQFRQRHPAIGAGVHQLIKNDSYFAFKRVLNEDKVMVVW
                     AGN"
     gene            complement(6299..9025)
                     /gene="malT"
                     /locus_tag="PXE26_001293"
     CDS             complement(6299..9025)
                     /gene="malT"
                     /locus_tag="PXE26_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MalT"
                     /protein_id="HDL5593881.1"
                     /translation="MLIPSKLVCSFRLQNSIPRKRLIQELDKSCSYPVVLINAPAGYG
                     KTTLVSQWIENKKNIGWYALDEGDNNSDRFATYFSAALHSAINEEIDVLLEENRKANL
                     LALFNQLLIKAAAFSEHFYLAIDDYHIIENDEIHEALKYWIKHQPSNMTLILISRSIP
                     PLSIASLRVQEQLLEIDINQLMFDHQESTAFFQARLGSELNQQDVIALCNEVEGWPTA
                     LQLISLFAKNKSHTLQVPLQDIAKRLAKSNHFHINEYLADEVLNKVDEETRLFILRCS
                     VLHSMNESLVQAVTGEQNSRTKLESLEKQGLFLQQMANSKWQSSDDSWWKFHPLFASF
                     LNLCCQNELYAELPQLHQKAANAWLQLGYVTEALHHAMQLSDTGLLLNILSKHAWTVF
                     HQGELKLLEESLNCLDYAHLTEHTNLVLLKAWLVQSQHRHIEVGGILADFSRALTENK
                     IELSKTANAEFNVLRAQVAINSGDENTALQLASEALNDLSENAYYAHIVATSIIGEAH
                     HCHGNLAEALAMLQKAERMARQHHTYHNILWSQLQQSEILLAQGFSQAAYEMLDKASE
                     FVKENHLQKVPMYEFLLRSKGKILWEWYNLDKAESMAVAGMNALSKFEDKLQCLTLLT
                     KISLARGNLDNTARLLGEVEQLEHSHSYHHDWIANADQVRIFYWQMTNDVSAVRNWLI
                     QNPSPVSDKNHFTQVQWRNIARSRILLEEYHEAKAILDNLIETAEKFSLISDLNRALI
                     VRNRLYFLQGEKELAQQDLIQALKLTRQTNFISAFVIEGDVMAQQIRHLLQLNVLDEL
                     VLHKAQFILRNINQFYRQKFAHFDENFVNQLLKNPKVPELLKISPLTQREWQVLGLIY
                     SGYSNEQISDELQVAATTIKTHIRNLYQKIGVTNRNEAISYTKELLMLMGYH"
     gene            9189..11558
                     /gene="malP"
                     /locus_tag="PXE26_001294"
     CDS             9189..11558
                     /gene="malP"
                     /locus_tag="PXE26_001294"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin phosphorylase"
                     /protein_id="HDL5593882.1"
                     /translation="MTFNSIVEKYCRYFDVTDPKHFTLQQWYQVVAEGSLELIYSQPA
                     TKPTESRHVNYLSMEFLIGRLTGNNLMNLGYYEQIRDYLKQYQVELVDVLEQERDPAL
                     GNGGLGRLAACFLDSMATVGQNATGYGLHYQYGLFKQSFKEGMQKEAADTWARDSYPW
                     HRFNPSKTRHIGFGGKIKHIQADQYEWQPKLTIQGKAFDLPIVGYKNNIIQPLRLWQA
                     DSDQSFDFDAFNEGKFLSADKTIVNAAALTQVLYPNDNHQAGQKLRLMQQYFHCACSV
                     ADILDRHISEGYSLEDLAKRQVIQLNDTHPTLAIPELMRVLLDEHQFTWEQAWDICSN
                     TFAYTNHTLLPEALEQWDQRLFKQLLPRHYQIVEKINDIFHDKVQAEFGDDAKIWEKL
                     AVLFDYRVRMANLCVVTCFRVNGVAEIHSDLLVTDLFPEYHKLFPTKFCNVTNGITPR
                     RWIRQANPQLSDLLDRTLKQDWTHNLELLKGVEQYADDTGFREEYQRIKRNNKVVLAN
                     EIHKTLGLNVNPNAIFDVQIKRFHEYKRQHLNLLNIIATYQSLKANPNQDYTPRLFLF
                     SGKAAPGYYLAKNIIHAINNVADIINNDKQVNDRLQVAFLPDYRVSLAEKIIPAADVS
                     EQISMAGKEASGTGNMKLALNGALTLGTLDGANVEIADMVGEENVFIFGHTVESVREL
                     LAKGYQPKAYYNQDPILKNAVDFLATGKASNGDKEAFKLMLDSLLERDPFLVFADFDS
                     YRQAQEKIGVAYLDQETWLRSAILNTARLGAFSSDRSIKDYQQRIWLNR"
     gene            11640..13718
                     /gene="malQ"
                     /locus_tag="PXE26_001295"
     CDS             11640..13718
                     /gene="malQ"
                     /locus_tag="PXE26_001295"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HDL5593883.1"
                     /translation="MKITAKQYYRAGIMPYFFDERGVKKTASEKIKHSLFKAFNGNTQ
                     ARETPIPTVNIFYQHQPCFLPFHLADKKHPLTGTWQLQLENSNQIISGKIKARGITLP
                     QDLPLGYHQLQLKTVDKTFNCTIIIAPERCYQPQAVIEQKRLWGTFLQLYTLKSAHNW
                     GIGDFGDLKDFIQQIAPYQADFIGLNPIHSLFPANPNSASPYSPSSRRWLNIAYIDIN
                     QLAEFQQSDEAQTWFHSAEIQQQLSELRTQDWLNYEQIIPLKLKGLRFAFAKFQQNMT
                     ACAAPAFIEFVQKGGESLQVQATFDALHQHLSAQFADQWGWDFWEKAYQDYHSAAVQQ
                     FRETHKTDIEFYLWLQFVADQQLAECDAICRQQNMRIGMYRDLAVGVSPNGAETWNDK
                     QLYCLNASVGAPPDVLGPQGQNWGLTPMNPHVLKQQAYRPFIELVRANMSHCGALRLD
                     HIMSLLRLWWIPKGDSAVNGAYIRYPVDDLIAILALESQRHQCLIIGEDLGTVPKEIV
                     SKLKNAGILSYKIFYFEFDEQGKSRDLQHYPYQAMTTLSTHDLPTINGYWRGYDFELG
                     EKFGVYPNSNILAILKQDRVNAKAKILQRLQEHNVEIAPEISEQLNSPVNTAFIHCLQ
                     TYVANVSSGLFGFQPEDWLGMTEPVNIPGTSTQYANWRRRLSVNLEEIFTDKDIQALL
                     KEVNLIRKNQ"
     gene            complement(13783..15444)
                     /locus_tag="PXE26_001296"
     CDS             complement(13783..15444)
                     /locus_tag="PXE26_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HDL5593884.1"
                     /translation="MSEIALTVSLLSLVAVLGLWIGHIKIRGVGLGIGGVLFGGLFVS
                     HFMAQFDVKLDAHTLHFIQEFGLILFVYSIGIQVGPGFFASLKHSGLKLNGFAVLIVL
                     ISGILVILIHKFFNVPLPVILGIFSGAVTNTPSLGAGQQVLAELSAESVTEIMGMSYA
                     IAYPFGIIGILLSMWLIRILFRINIEAEAEAFNKQQNRSKDQLSTLNVRLTNPNIHGL
                     TLKQIPDFNLHEVAYSRLKRGNELSIPRVDTILQIGDILHLVGEESSLRKMQIILGEA
                     VDVSVSTKGTIYRSERAVVTNEKVFGKQIRQLMLKGKYDVVISRLNRAGVELVPTGDM
                     TLQFGDVLNLVGRQADIEMVMTIIGNAHSKLQQVQMLPIFIGIGLGVLLGSVPIYLPG
                     FPVALKLGLAGGPLVVALILARIGSFSKLYWFMPPSANLALREIGIVLFLAVVGLKSG
                     GRFLETLLSSEGVEWICYGAIITFVPLMIAGLIARMYNKVNYLTICGLLAGSMTDPPA
                     LAFANEIKEGNGAAALSYATVYPLVMFLRIMLPQVLAIMLWVSGG"
BASE COUNT         4796 a         3216 c         2991 g         4530 t
ORIGIN      
        1 ttagagccat agccataatt atttaaaaaa cgccaattca gaaaaattaa ataaattttg
       61 tgatcaacct ctcattttta atgcctattt ttgtgaagca gatcacaaaa tgataaaaaa
      121 tgttacttag atcatacttt tagcttgggg ggcgtagagc aaagggtgat ctcaaataga
      181 ttgtatagcc cataatttgc cataatttaa taaatgggtt gtttcatatc cgtttctttt
      241 atttaacttc aaggagtttt ttatgaaaaa caaatgtgtc aaattcacct tagctactct
      301 tgctacctta gttctttcag gaacagtaat ggcaaaaatg acggaaggta aactcgttat
      361 ctggattaac ggtgataaag ggtacaatgg gcttgccgaa gtcggtaaga aatttgaaaa
      421 agataccggt gttcaagttt tagttgaaca cccggataga cttgaagaaa aatttgcaca
      481 ggttgcctca actggtgacg gtccggatat tatgttctgg gctcacgacc gctttggtgg
      541 ttatgcacaa tccggtttat tggctgaagt gaatgtaagc aaagaattta aagataaatt
      601 tgtcgatttt gcttgggatg ctgaaactta caacggcaaa attatcggtt atccggttgc
      661 gattgaagcg atttcattaa tttataataa agatttagtg aaagaagcac caaaatcttg
      721 ggaagaaatt attgagttag ataaaaaact caaaaaagag ggcaaaaatg ccattatgtg
      781 gaacttatcc gagccctatt tcacgtggcc gattgcggct tcaaacggag cttatgcatt
      841 caaatttgct aacggcaaat acgatccaaa agatattggt gtgaacaatg aaggggcagt
      901 aaaagcacta caatttgtag tcgatatggt gaaaaataaa catattagtg cggatatgga
      961 ctatgccgtt gccgaagcct cctttaataa aggacaaagt gccttaacca tcaatggtcc
     1021 ttggtcttgg ggcaatattg ataaaagcgg tattaaatat ggtgtaactt tactcccaac
     1081 attaaacggt caagcttcta aaccattcgt aggggtgtta agtgccggtg taaacagctc
     1141 aagcccaaat aaagatttag ccaaagaatt cttagagaat tatttactca ccgacgacgg
     1201 tttagatgca gtcaataaag ataaaccttt aggtgcggtg gcgttaaaat cttaccaaga
     1261 gaaattagcg gctgatcctc gtattgctgc aacgatggca aatgcgaaaa acggtgaaat
     1321 tatgccaaat attccgcaaa tgtcttcttt ctggtatgcc gaaaaatctg ctatcaataa
     1381 tgcagtgacc ggtcgtcaat cggtgaaaga agcattagat gatgcacatt cacgcattca
     1441 aaaacaacaa taattcttca tcattctgag tgggttatta tgacccactc tatttttaga
     1501 ttcaccctaa atacaataaa agtacagtaa aagtaccgta acaaaatgca gtaaaaattc
     1561 gaggtgctgt tatgctaact caaactcaat ccaaatccac tcattggctc aaatatctct
     1621 tagccggatt agtcttgctc cttgacttct atcttgttgt cttaatgtac tcacaaggtg
     1681 aatatctttt tgctatttta acgctgatta ttctaacttc cggtgtctat atttttacca
     1741 ataaaaatac ctatgcttgg cggtatgttt accctggcat taccggaatg gcaattttta
     1801 ttttgtttcc gctggttgcg actattgcaa ttgcgtttac caactatagt ggttctaatc
     1861 aattatcctt tgaacgagcg gtatccgtct taactgaaca acgctatttt gccggagata
     1921 aatatcaatt caccctttat ccgcaagcag ataataaata tcaaattgca ttaaccaatc
     1981 cgacgacaga gcaaactttt gtgtcagagc cgatttcatt ggctaccgga acgaatgtgg
     2041 ttgtaaccga gcaaaacaga ccaactggcg aagtcgctcc ccttaaagtg attacgcaaa
     2101 atcgggccgc acttcaatca atgaaagtgg ttttaccgaa taataatgaa ctgacaatga
     2161 gctcattacg tcaattctcc gagcaaaaac cacgctatca atttgatgaa gaaaataaaa
     2221 tattactcaa taatgagact ggcaaacgtt atcaagcaaa tgacgaaacc ggtttcttcc
     2281 aatcgattga tgaaaacggt cattggcaaa gcgaaacact tgaaccaggt tatactgtca
     2341 catcaggctt taataacttc attaaaattt ttaccgatga aggtattcaa aaaccttttg
     2401 tccaaatatt tatttggacg gtgatcttct ctttattaac cgttgtcttt accgttattc
     2461 tcggtatggt tcttgcctgt ttggtacaat gggaggcatt aaaaggtaaa gcagtctatc
     2521 gtgtcttatt gattttacct tatgccgtac catcatttat ttcgattctg atttttaaag
     2581 gactatttaa ccaaagtttt ggtgagatca atatgatttt aaaccaacta ttcggcatca
     2641 gccctgaatg gtttaacgat ccgctccttg ccaaagtgat gatcttaatt gtcaatacgt
     2701 ggttaggtta tccttatatg atgattttat gtatggggtt actcaaagct attccggctg
     2761 atttatatga agcctccgca atggacggtg cttccacttg gcaaaacttc agtaaaatca
     2821 ctttcccatt actgttaaaa ccacttactc cgttaatgat tgcttcgttt gcatttaact
     2881 ttaataactt tgtattaatt caactattaa caaacggtcg cccggatatg attggaacaa
     2941 ccactccagc cggttatacc gatttattag tcagctacac ctatcgtatt gcctttgaag
     3001 gaagtggtac gcaagatttc ggcttagcag ccgccatcgc aaccattatt ttcttattag
     3061 tcggtggctt ggcactctta aatatcaaag caaccaaaat ggaattataa aagcgggagg
     3121 gatttaacaa tcccgacccc aaactaactt taggagttat atatggcaat tgttcaatct
     3181 aaatctgtgc gttatcgggt atgggcaacc catttcatct taatctgttt ccttgcctta
     3241 attattttcc ctttattaat ggtgattggc atttcgttac gaccgggaaa tctggctatc
     3301 ggtgatatta ttccaagcca aatttcgtgg gaacattggc aagccgctct tggttttgat
     3361 gttacacacg ccgatggtac agtcacaccg ccgccattcc cggtgctacg ctggttatgg
     3421 aactccatca aagtggcaac aattacctct atcggcattg taaccttatc tacgacctgt
     3481 gcttatgcat ttgcccgaat gaaatttaaa ggcaaaaaaa ccattctaca aggtatgctg
     3541 attttccaaa tgttcccggc agtgctttcc ttagttgcct tatatgcgtt gtttgatcgt
     3601 cttgggcagt atgtaccgtt tcttggttta aacacacacg gtggtgttat ttttgcctac
     3661 ttaggcggaa ttgccttaca cgtttggaca atcaaaggct actttgaaac gattgatggt
     3721 tcattggaag aagccgcttc ccttgatggt gcaaccccgt ggcaagcgtt ccgattaatc
     3781 ttattaccgc tttcagtgcc gattttggcg gtagttttca ttctttcatt tattgccgcc
     3841 attaccgaag taccggttgc ctcactccta ttgcgtgatg taaacagcta caccctagcc
     3901 gttggtatgc aacaatacct ctatccgcaa aactatttat ggggtgactt cgcagcagcg
     3961 gcggtcttat ccgcaattcc gattacgctg gtcttcttat tggcacaacg ctggttaatc
     4021 ggtggtttaa ctgccggcgg cgtgaaaggc tagtttgcaa aaaattctct aaaaacgacc
     4081 gcttgtcgag ctgatactgc ggtcgtcaat ctttattagg gctgtctatg aaaaatgcgt
     4141 taccttatct ctgcttattc tatacctcaa gcctttttgc ccaatcttgg caacattccc
     4201 atttttctga ttttaacgat gatctcgaaa aacatttttt tcaatcccaa gttcaattgg
     4261 aaaaagggag ctatccgctt aggttcaaat ttggcgaaca atgttatcaa ccccaacaag
     4321 cgataaaatt aaatcaatcg gttgcgttag tcccttgtat aaatgaagct ccacaactgc
     4381 ggttgtttcg tcaaggcaac tatctggcac aaattgatct gcgaagcggc actccgacac
     4441 ccacaatcag cgtagaacag cagctacagc acaatgaagc gatgtttcaa agttgcccga
     4501 attgggataa aaaaccgatt gaaattgatg tttcttccac ttttgccgaa ggcgaatcgg
     4561 ttagcgattt ttattcaggc aacaccgcta tcgttaaaaa cggcaaagtc accttaatgc
     4621 ccaatgaaaa cgcaagcggt ctgattttgc tggaaaaaag caataccgaa aatacggcaa
     4681 cgtttgattg gaaaaatgcc accgtctatt ttgtgctgac cgaccgcttt tataacggcg
     4741 atccgaccaa tgaccacagc taccaccgcc aaaaagacgg aatgcaagaa atcggcacct
     4801 ttcacggtgg tgatttaaaa ggattaaccg aaaagctcga ttacctacaa caacttgggg
     4861 taaacgtatt gtggattagc tctccgttag aacaaatgca cggctgggtt ggcggcggtg
     4921 ataaggggga ttttccgcat tatggctatc acggttacta tcatttagat tggacgaaat
     4981 tagatgccaa tatgggtact gaagacgatt taagtcgctt tgttcaacaa gcccaccagc
     5041 gtggtattcg ggtgctattt gatgtggtga tgaaccatac cggctacgcg acgcttgccg
     5101 atatgcagga gtttaacttt ggcggatttt acttaacacc ggacgaaatt agccgcacat
     5161 taggcgaaaa atggacacac tggaagccga aatcaggaca aaattggcac agtttcaatg
     5221 atttcattcg ctttaacgat aatcaggctt ggcaaaattg gtggggaaaa gaatgggtta
     5281 gagctgatat tgccgattac gacagcccta aatttgatga tttaaaaatg tcgctcgctg
     5341 cccttcctga tctaaaaacc gagagcgaac aagcggtcaa attacctgaa ttttttgcaa
     5401 ataaaaatac caatgccaaa acattaccaa acgccaaagt gcgtgattat ttaattggtt
     5461 ggttatccga ttgggtcaga aaatatggca ttgacggttt tcgggttgat accgccaaac
     5521 acgttgaaaa atccacgtgg ctggtattaa aacaatcggc acaacaagcc ttaaacgaat
     5581 ggcaaaaagc caatccgaac gccggtttta acgatcgctt ttggatgaca ggagaagcgt
     5641 ggggacacgg cgtgttcaaa agtgactatt atcaaaacgg ttttgatgca atgatcaatt
     5701 tcgattttca agatcaggct aaacaagggt taaattgctt tgcccatatt gagccgattt
     5761 atgccgaaat gaatcgcaaa ttaagcgact tcaatgtgtt gagctattta tcttcacacg
     5821 atactcgatt atttttccat tcggatagtg aacaaaatat cgaaaaacac aaaaccgccg
     5881 caaatttgct gttgctttca cccggtgcag tgcaaatcta ttatggtgat gaaagtgggc
     5941 ggacatttgg tgcgaccggt tcagacctga tacaaggcac ccggtcggat atgaattggc
     6001 aagagttgca gcaagatcct cagaaacagg cattgcatca acattggcaa aaattgacac
     6061 aattccgcca acgccatccg gctattggcg caggtgtcca tcaactcatc aaaaatgata
     6121 gctactttgc atttaagcgt gtgttgaatg aagataaagt gatggtggtt tgggccggaa
     6181 attaaatcta ctttagcttc aagttttctc tcttctgggg aaaacttgaa gccggttcgg
     6241 ggaaacaagt tgcaaaaaat tactaaaaat agaccgcttg ttccccatga gcttgtgatc
     6301 aatgataccc catcaacatc agcagttctt tcgtatagct gattgcttcg ttacgattcg
     6361 tcacaccgat tttctgataa agatttcgga tatgggtttt aatcgtggtt gcagccactt
     6421 gcaattcatc tgaaatttgt tcattgctat atccggagta aatcaaaccc aatacttgcc
     6481 attcccgctg agtgagcgga ctaattttta agagttccgg cactttcgga tttttcaata
     6541 attgattcac aaagttttca tcaaaatggg caaatttttg gcgataaaat tgattgatgt
     6601 tgcgtaaaat aaactgtgct ttgtgcaata ccagttcatc tagcacatta agttgcaata
     6661 aatggcggat ctgctgtgcc attacatccc cttcaatcac aaacgcactg ataaaattcg
     6721 tttggcgggt gagttttagt gcctgaatta aatcttgctg agccaattct ttctcgcctt
     6781 gtaaaaaata aagccggtta cgaacaatta atgcgcgatt taaatcgcta atcagagaaa
     6841 atttttcagc cgtttcaatt aaattatcta aaatggcttt cgcctcgtga tattcctcaa
     6901 gcaagattcg agaccgtgca atatttcgcc attgcacttg ggtaaaatga tttttatctg
     6961 aaaccggtga ggggttttga attaaccagt tcctcaccgc agaaacgtca ttggtcatct
     7021 gccaataaaa tatacgtacc tgatcggcgt tggcaatcca atcgtggtga taagaatgag
     7081 aatgttctaa ttgttcgacc tcgcctaata atcgggcagt gttatccaaa ttgcctcgag
     7141 ccaacgagat cttcgtgagt aaagttaagc attgtaactt atcttcaaat ttagataagg
     7201 cattcattcc ggcaactgcc attgattcag ctttatctaa gttataccat tcccataaaa
     7261 tcttgccttt agaacgtagc aaaaattcat acatcggcac tttttgtaga tggttttctt
     7321 tcacaaactc gcttgcttta tctaacattt cataggctgc ttgtgaaaac ccttgggcaa
     7381 gcaaaatttc agattgttga agctgtgacc acaaaatatt gtggtaagta tgatgctgac
     7441 gtgccatacg ctctgctttt tgcaacattg ctaatgcttc tgccagattg ccgtggcaat
     7501 gatgagcttc gccaataata gacgttgcaa caatatgagc ataataggca ttttctgaaa
     7561 gatcgtttaa cgcttcagac gctaattgaa gtgcggtatt ctcatcaccg gaattgatag
     7621 caacttgtgc ccgtagcaca ttaaattccg cattggcagt tttgctcaat tcaattttat
     7681 tttcagttaa tgcacgagaa aaatccgcta aaataccacc tacttcaata tggcggtgct
     7741 ggctttgtac caaccaggct ttgagtaaca ccaaattagt atgttcggtt aaatgggcgt
     7801 aatctaagca atttaagctc tcttccaata atttgagttc tccttgatga aacaccgtcc
     7861 aagcgtgttt gctcaaaata ttgagtagta atccggtatc cgataactgc attgcgtgat
     7921 gtaaggcttc tgtaacatag cctaattgta accacgcatt cgccgccttt tgatgcagtt
     7981 gcggtaattc agcatataac tcattttggc aacataaatt taaaaaggaa gcaaaaagcg
     8041 gatggaattt ccaccagcta tcatcactac tctgccactt actgtttgcc atttgttgta
     8101 aaaacaaacc ttgcttttcg agagactcta atttggtgcg actgttttgc tcccctgtaa
     8161 cagcctgcac taaagactca ttcattgaat gcaaaaccga acaacgcaaa ataaacaaac
     8221 gagtctcttc atcgacttta ttaagcactt catcggctaa atattcgtta atatgaaaat
     8281 ggtttgattt ggctaaacgt ttggcaatat cttgcagtgg tacttgtagc gtgtgtgatt
     8341 tattttttgc aaaaaggcta attagctgaa gggctgtggg ccacccttca acttcgttac
     8401 acagtgcgat aacatcttgc tgatttaact ccgaacctaa tcttgcttga aaaaaagcgg
     8461 tactttcttg gtgatcaaac attaactggt taatatcaat ttccaataat tgttcttgca
     8521 ctcttaaact ggcaatactt aacgggggaa ttgatcgaga aatcaagata agcgtcatat
     8581 tagacggttg atgtttaatc caatatttta atgcttcgtg aatttcatca ttttcaataa
     8641 tatgataatc atcaatagca agataaaaat gctctgaaaa tgccgcggct ttaatcaata
     8701 attgattaaa taaagctaat aaattagctt tacgattttc ctctaacaat acgtctattt
     8761 cttcattgat tgctgaatgc aatgccgcac taaaataagt ggcaaaacga tctgaattat
     8821 tatcgccttc atctaacgca taccagccga tattcttttt attttcaatc cattgggaaa
     8881 ccagagtggt tttgccataa cctgccggtg catttatcaa tacgaccgga taactgcaag
     8941 atttgtctaa ttcttgaatt aaacgttttc gaggaatgct gttttgtaat cgaaaagaac
     9001 aaacaagttt tgatggtatt aacataataa attcaatttt ctctcataac aaaataggga
     9061 tgatatatcc accatttgtg ttctcactac ttccttataa tcataccata caagatgatt
     9121 attgggatga tttgatttta tttggatttt acataatagc gacattcatc tttaaccggg
     9181 ggtttcctat gacatttaat tctattgtag aaaaatactg tcgctacttt gatgtgacag
     9241 atccaaaaca ctttacctta cagcagtggt atcaagttgt tgctgaaggt tcccttgagc
     9301 taatttatag ccagcctgca accaaaccga cagaatcacg ccacgtgaac tacctctcaa
     9361 tggagttctt aatcggtcgg ttaaccggca ataatttaat gaatttaggt tattacgaac
     9421 aaattcgtga ctatcttaaa caatatcaag ttgaattagt agatgtttta gaacaagagc
     9481 gtgatccggc attgggtaat ggcggattag gtcgtcttgc tgcctgcttt ttagattcga
     9541 tggcaactgt cggacaaaat gcaaccggct atgggcttca ttatcaatat ggtctgttta
     9601 aacaaagctt caaagaggga atgcagaaag aagcagcgga tacttgggct cgtgacagct
     9661 acccgtggca tcgttttaat ccgtctaaaa cccgccatat cgggtttggt ggaaaaatca
     9721 aacatatcca agccgatcaa tatgaatggc agcctaaatt gaccattcaa ggcaaagcct
     9781 ttgacttgcc gattgtaggt tataaaaaca acatcattca accattacgt ttatggcaag
     9841 cagatagtga ccaatctttt gattttgatg cctttaatga gggtaaattt ttaagtgccg
     9901 ataaaacgat tgtcaatgca gccgcactaa ctcaagtgct gtatccaaac gacaaccatc
     9961 aagccggaca aaaattacgc ttaatgcagc aatacttcca ttgtgcctgc tcggttgccg
    10021 atattttaga tcgtcacatt agcgaaggtt attcgttaga agatttagca aaacgccaag
    10081 ttattcaact caatgatacc catccaacgc tcgctatacc tgaattgatg cgtgtactgt
    10141 tagatgaaca tcaattcact tgggagcagg cttgggatat ttgcagcaat acctttgctt
    10201 acactaacca taccttatta cctgaagcac ttgaacaatg ggatcaacgc ctatttaagc
    10261 agctattacc tcgccattat caaattgtgg aaaaaatcaa tgatattttc cacgacaaag
    10321 tacaggcaga atttggtgat gatgcaaaaa tttgggaaaa attagccgtg ctatttgatt
    10381 accgtgtgcg tatggcaaac ctctgcgttg tcacctgctt ccgtgtaaac ggcgttgcgg
    10441 aaattcactc cgatctctta gtgaccgatc tattcccgga ataccacaaa ttattcccaa
    10501 caaaattctg caatgttact aacggcatca cacctcgccg ctggattcga caagctaatc
    10561 cacaattaag tgatttattg gatcgtacct taaaacaaga ttggacacac aatctggaat
    10621 tattaaaagg cgttgaacaa tatgcggatg acaccggttt ccgtgaagaa tatcaacgca
    10681 ttaaacgcaa taacaaagtg gttttagcca atgaaatcca taaaacatta gggttaaatg
    10741 tcaatcctaa tgcgattttt gatgtgcaaa ttaagcgttt ccacgaatat aaacgccaac
    10801 atttgaattt gttaaacatt attgcgacct atcaatcgct aaaagctaac ccgaaccaag
    10861 actacacacc acgtctattc ctattctcgg gcaaagctgc accgggttat tatttagcaa
    10921 aaaatattat tcacgctatt aataatgtgg cagatattat taataacgac aagcaggtaa
    10981 atgatcgact acaagtggca ttcttaccgg attatcgagt cagtcttgcg gaaaaaatta
    11041 ttccagcagc tgatgtatca gaacagattt caatggcagg taaagaagcc tccggtaccg
    11101 gtaatatgaa attggcactc aacggcgcat taaccttagg tacgctagac ggtgccaatg
    11161 ttgaaattgc tgatatggtc ggtgaggaga atgtctttat cttcggtcac accgtagaaa
    11221 gcgtgaggga attattagca aaaggctacc aaccgaaagc ctactataac caagatccga
    11281 ttctgaaaaa tgcggttgat ttcttagcca caggaaaagc ctctaacgga gataaagagg
    11341 cattcaagct gatgttagat agcctgttgg aacgagatcc tttcttagtc tttgccgact
    11401 ttgatagcta tcgccaagca caagagaaaa ttggtgtagc ctatttagat caagaaactt
    11461 ggctgcgtag tgcaatttta aatactgctc gtttgggtgc atttagctca gaccgctcaa
    11521 ttaaagatta tcaacaacgt atttggttga atagataata aattcgggcg acttctacaa
    11581 taaaggaagt cgcctatttt ctgctgtatt tcatatgtat ttatatatgg agagaaatga
    11641 tgaaaataac tgccaaacaa tattatcggg ctggaattat gccctatttt ttcgatgagc
    11701 gtggtgtaaa aaaaacagca tctgaaaaaa taaaacattc gttattcaaa gcctttaacg
    11761 gcaatactca agcaagagaa acacctatcc ctacggtcaa cattttttac cagcaccaac
    11821 cctgtttttt accttttcat ttagcggata aaaaacatcc gttaaccggt acttggcagc
    11881 tacaactaga aaattcaaac caaattattt ccggcaaaat taaagcaagg ggaattacat
    11941 tacctcaaga tttgccctta ggttatcacc aattacagct aaaaacggta gataaaacct
    12001 ttaattgcac cattattatc gctccggaac gctgctacca accacaagcc gtcattgaac
    12061 aaaaaagatt gtggggaacc ttcctacaac tatacacctt aaaatcagcc cacaactggg
    12121 ggattggcga ttttggcgat ttaaaagact tcattcaaca gattgcccct taccaagcag
    12181 attttatcgg cttgaacccg attcactcac tttttccggc aaacccgaat tctgccagcc
    12241 catacagtcc atcctctcgc cgatggctga atattgctta cattgatatc aatcagctag
    12301 cggaatttca acaaagtgat gaagcacaaa cttggtttca ttctgctgaa atccaacaac
    12361 aattatcaga attacgcact caggattggt tgaattacga gcaaatcatt ccgttgaaat
    12421 tgaaagggct acgctttgct ttcgcaaaat ttcagcaaaa tatgaccgct tgcgctgccc
    12481 ctgcttttat cgaatttgta caaaaaggtg gtgaaagctt acaagttcaa gccacatttg
    12541 atgcccttca tcagcatcta tcggcacaat ttgccgacca atggggctgg gatttctggg
    12601 agaaagccta ccaagactac cactccgcag ccgtgcagca atttagagaa acgcataaaa
    12661 ccgacataga attttacctt tggttacaat tcgttgccga tcaacagcta gcagaatgtg
    12721 atgctatctg ccgtcagcaa aatatgcgta ttggtatgta tcgcgatctc gccgttggcg
    12781 tcagcccgaa tggtgcagaa acgtggaatg acaaacaact ttattgctta aatgcctctg
    12841 tcggcgctcc gcctgatgta ttaggtccgc aaggacaaaa ctggggctta accccaatga
    12901 atccgcatgt attaaagcaa caagcctacc gtccgtttat tgagttagtc agagctaata
    12961 tgagtcattg cggtgcatta cgccttgacc atattatgtc tttactccgt ttatggtgga
    13021 tccccaaagg cgatagtgcg gttaatggtg cttatattcg ttatccagtt gatgatttaa
    13081 tcgcaatttt ggcacttgaa agccaacgcc accaatgcct aattatcggt gaagatttag
    13141 gtactgtgcc aaaagaaatt gtgagcaagc tcaaaaatgc ggggatttta tcttacaaaa
    13201 ttttctattt tgaatttgat gaacaaggga agagtcgaga cttacagcat tacccttacc
    13261 aagcaatgac cacattaagc acccacgatt taccgactat caatggttat tggcgtggct
    13321 atgattttga attaggcgaa aaattcggcg tctatcctaa ttcgaatatt ttggcaatcc
    13381 ttaagcaaga tcgagtcaat gccaaagcca aaatcttaca acgcttacaa gaacataacg
    13441 tagagatcgc acctgaaatt agcgagcaac ttaattctcc ggtgaatacc gcatttattc
    13501 actgtttaca aacctatgtt gcaaatgtaa gcagcggatt attcggcttc caacccgaag
    13561 actggttggg tatgactgag ccggttaaca ttccgggaac cagtacacaa tatgcaaact
    13621 ggcgacgtcg gcttagtgtt aacctcgagg agatcttcac agataaagat attcaagcct
    13681 tattaaaaga agttaattta atccgtaaaa atcaataaaa gttagataag aaaaaaggcg
    13741 actttccgtc gccttttggg cttatatgct tgatgtctat ctttatccac ctgaaaccca
    13801 caacataatc gctagcactt gaggtagcat aatacgcaaa aacattacta gtgggtaaac
    13861 agttgcatag gataacgctg cagcgccatt tccctcttta atttcattgg caaaagcaag
    13921 cgctggagga tcagtcattg agccggcaag taatccacaa atcgttaaat agtttacttt
    13981 gttatacatt ctggcaatca atcctgctat catcaatgga acaaaagtaa taatcgcccc
    14041 atagcatatc cactcaacgc cctcactgct taatagcgtt tcgagaaatc taccgccaga
    14101 ttttaaacca actaccgcta aaaacagtac aataccgatt tcacgcaatg caagattggc
    14161 acttggtggc ataaaccagt agagtttact gaaactacca attcttgcaa gaataagagc
    14221 aaccaccagt ggtccaccag ccaagcccag ctttaacgca acagggaaac ccggtaaata
    14281 aatcggtaca gaaccaagta atactcccaa accgatcccg ataaatattg gcaacatttg
    14341 gacttgttgc aactttgagt gcgcattgcc gataatcgtc attaccattt caatatcagc
    14401 ttgccgccct actaaattga gaacatcacc aaattgtaac gtcatatcac ctgttggtac
    14461 taattctaca ccggctcgat ttaaacgaga aatgacaaca tcgtatttgc ctttaagcat
    14521 tagctgacga atttgtttcc cgaagacttt ttcattcgtc actacagcac gttcagaacg
    14581 gtaaatcgtg cctttggttg agacagatac atctactgcc tcacctaaaa taatctgcat
    14641 ttttcgtaat gaggattctt cacctactaa gtgtaaaata tctcctatct gtagaatcgt
    14701 atctacacgt ggaatagaaa gctcattccc ccgttttaag cgtgaataag ctacttcgtg
    14761 caaattaaaa tcaggaattt gtttcaacgt taaaccgtga atatttggat tagtcagacg
    14821 gacatttaag gtactaagtt gatctttact tctattttgc tgtttgttaa aagcctctgc
    14881 ttccgcctca atattgattc gaaataaaat ccgaatcagc cacattgaaa gtagaattcc
    14941 gataatgccg aacgggtaag caatcgcata actcattccc ataatttcag ttacactctc
    15001 agcgcttaac tcagccaata cctgttgacc tgctcctaaa gaaggggtat tggttacagc
    15061 cccggagaaa atgcctaaaa tcacaggcaa aggaacattg aagaatttat gaataagaat
    15121 aactaaaata ccgctaatca gtacaatcag taccgcaaaa ccattgagtt ttaagccaga
    15181 atgttttagt gaggcaaaga atccaggtcc tacttgaatt ccaattgaat aaacaaataa
    15241 aatcagcccg aactcttgaa taaaatgaag cgtatgggca tcgagcttca catcgaattg
    15301 cgccataaaa tgggagacaa acagcccacc aaataacact ccccctatac ctagccccac
    15361 gcctctgatt ttaatatggc caatccataa gcctagaacg gccactaaag ataataaact
    15421 gacagtaagt gcaatttcgc tcattacagc ctctctttaa tatgaaatac ctcaaaaatg
    15481 gtatccaatt ctaccaaatc tcaaaaacga aaaatgagat ctatgtcaaa aaa
//
LOCUS       DANLZD010000059        15343 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.059, whole genome shotgun sequence.
ACCESSION   DANLZD010000059 DANLZD010000000
VERSION     DANLZD010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15343)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15343)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15343
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.059"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(46..1272)
                     /locus_tag="PXE26_001297"
     CDS             complement(46..1272)
                     /locus_tag="PXE26_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HDL5593885.1"
                     /translation="MKETLLVIADDLTGANDTAVMFAESGFDTVLKTKVSALAQIHPD
                     KAQVISVSTDSRAIGEKAKELTQIAISNAIQNSIGQIYLKIDSTMRGSVKYQIEGAIK
                     AWAGLYPDVKAIICPAYPEMGRTIEAGHLYVNGVPVNETASGKDPICPVHSSSMQKLL
                     PDAQVIPCDTVDNLQASIENSEYKQIVIDAKTHEDLSMIAQVINHIGNKIIPVGSAGL
                     AQKLKNIQNQQQPERNLKLGRALIVVTSIHETSQLQVDEYISTLGGKSIVFNPSPSQL
                     INYSQSEHSLKLQLNALIRFSRDHVIIRANPAKVVNAKSANITETSKEISQHLADLSK
                     FCLDNEKFDSLILFGGDGAAALLDQMNVTEMNVQYAVVPGVPLCSIEKGNYSGITVMT
                     KSGGFGNNTLLSNIMN"
     gene            complement(1269..2267)
                     /locus_tag="PXE26_001298"
     CDS             complement(1269..2267)
                     /locus_tag="PXE26_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxygluconate permease"
                     /protein_id="HDL5593886.1"
                     /translation="MSTQTSKSIVPIYDGMNKIPGGAMVIPLILGSIIGTFFPEFLNL
                     GSFTTALFKSSAGPLIALLIFATGMQITVRSSGPVLAHTGVVLLFKTIIPALLVVILG
                     LWVGNDGVMGVSLLAMLTVVANSNGGIWLAFTGKYGDYRDKGAYVASAVNDGPFFVLL
                     FLGVSGLADIPLSLMLAAVIPLIIGMVIGNLDPKWTELMKPTGAIVIPFFAFALGTGI
                     NLQSIITGGATGIILGIVASLFTGFLVFIGYKTILRRGNQSGIGFAAGTTAGNAIITP
                     EIVAQADPTLAPFVQTATAQIAAAVLVSAILAPLFAAWVLKRQGGLEQDTIKGENL"
     gene            complement(2278..3279)
                     /gene="pdxA"
                     /locus_tag="PXE26_001299"
     CDS             complement(2278..3279)
                     /gene="pdxA"
                     /locus_tag="PXE26_001299"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HDL5593887.1"
                     /translation="MKPILGITMGDAAGIGPEVIIKALANQRIYELAHPVVIGDRKII
                     QRALPIVHSELKLRILNNLDNFVAEYGVIDILDLNNLPEDLPFAQVDPRAGKAAYEYI
                     EEAVNLAMGGKIHAIVTAPLNKEALHAGGKPFPGHTEILATLSNTKDYSMMLTSEKLN
                     VIHVTTHVQLRKACDLITKERVATVIDLAEENARILGFKEPRIAVAGLNPHSGENGMF
                     GDEDQKEIVPAIQEAQAKGFNVTGPVPPDTLFHRAANLNEFDIVVVMYHDQGHIPIKL
                     LGFDTGVNVTVGLPFIRTSVDHGTAFPIAGKGTADSRSMTEALYLGAKMANIKYATH"
     gene            3713..5077
                     /locus_tag="PXE26_001300"
     CDS             3713..5077
                     /locus_tag="PXE26_001300"
                     /EC_number="2.6.1.76"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005820549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminobutyrate--2-oxoglutarate transaminase"
                     /protein_id="HDL5593888.1"
                     /translation="MTIKTPIQAVLASNQYFLDRQDAMESNVRSYPRKLPFAYQKAQG
                     VWVTDVEGNEYLDFLAGAGTLALGHNHPKLIQAVKDVLDSGLPLHSLDITTPLKDAFT
                     EELLSFFPKDKYILQFTGPSGADANEAAIKLAKTYTGRGNVIAFSGGFHGMTHGALSL
                     TGNLSAKNAVQGLMPGVQFMPYPHEYRCPFGIGGEAGAKAVEHYFENFIEDVESGVVK
                     PAAVILEAIQGEGGVVPAPISFLQKVREVTQKHGILMIVDEVQAGFCRSGKMFAFEHA
                     GIEPDIVVMSKAIGGSLPLAVLAIKKEFDAWQPAGHTGTFRGNQLAMATGYVSLKIMR
                     EENLAKNAQERGEYLTNALRELSKELPCIGNVRGKGLMMGIDIVDERQPKDATGAYPR
                     DCDLAVAIQKYCFKNKLLLERGGRGGNVVRVLCAVNITQAECEEFIKRFKQSVAEAVK
                     AVRG"
     gene            5167..6702
                     /gene="ddc"
                     /locus_tag="PXE26_001301"
     CDS             5167..6702
                     /gene="ddc"
                     /locus_tag="PXE26_001301"
                     /EC_number="4.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-2,4-diaminobutyrate decarboxylase"
                     /protein_id="HDL5593889.1"
                     /translation="MSNLEKHRQSLFCSDPKSIADYESAMNNAVKAVSDWLKEEKMYT
                     GGSIKELRAKINGFNPTQAGVGVQKSLEHLVEIFLKPSLKVHHPHSLAHLHCPTMVTS
                     QIAEVLINATNQSMDSWDQSPAGSIMEEHLIDWLRQKVGYGKGTSGVFTSGGTQSNLM
                     GVLLARDWAIANHWKKADGSEWSVQADGIPADAMQKVKVVCSENAHFSVQKNMAMMGM
                     GFQSVVTVPSNANAQMDVEALAKTLADLKAEGKIVACIVATAGTTDAGAIDDLKAIRK
                     LADEHQAWVHVDAAWGGALLLSKDFRHFLDGIELTDSITLDFHKHFFQSISCGAFLLK
                     DEANYRFIDYKADYLNSEYDEEHGVPNLVSKSLQTTRRFDALKLWFTVEALGEELYAS
                     MIDHGVYLSKEVEAYINATDGLEMLVPAQFASVLFRVVPQGYPAEFVDTLNQNVADEL
                     FARGEANIGVTKVGEHQSLKMTTLSPIATLENVRALLAQVLAEADRIKDSIVNGTYVP
                     PID"
     gene            6805..7167
                     /locus_tag="PXE26_001302"
     CDS             6805..7167
                     /locus_tag="PXE26_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NirD/YgiW/YdeI family stress tolerance protein"
                     /protein_id="HDL5593890.1"
                     /translation="MKKVLGLTLMAMALSACNSTASNGSSQANTGVAPANVISVKQAL
                     AAADDSYVTVEGTLLNKVGDETYLFKDATGQIRVEIDDEVWAGQHVGSEGNKVRLYGE
                     IDKGFNKTELDVKTLTVL"
     gene            complement(7257..7844)
                     /locus_tag="PXE26_001303"
     CDS             complement(7257..7844)
                     /locus_tag="PXE26_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5593891.1"
                     /translation="MNHLIIYAHPNPSSFNHAILEKTIAASVPNKVVVRDLYQLNFKP
                     ILDWAEFQGTLSKHYEADVAIEHQYWLEADVITLIYPLWWMGFPAILKGYLDRVLSYD
                     FAYRNGEIESIGLLTGKKMQQFVTLGNSNEKYERKGFLAAFEHTLGKGLFEFCGIRDV
                     KMHYFGNIGLKETDYTAILQQITASCSTILKEQAV"
     gene            8020..8568
                     /gene="napF"
                     /locus_tag="PXE26_001304"
     CDS             8020..8568
                     /gene="napF"
                     /locus_tag="PXE26_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapF"
                     /protein_id="HDL5593892.1"
                     /translation="MTDYPNQSLPRRSFLRGQFLDSLKSQKVSQQGYEPIRPPWANLA
                     NFLEKCTACGNCIQACETQIIVKGAAGYPEIDFSRGECTFCEKCVHSCEAEVFRAVSE
                     QPWSHKIEIQAGCLLKLGTECRSCGDSCEMRVIRFRPSLGGIAEMVLNLESCNGCGAC
                     LSVCPTSAIKIQPLQTQANRDE"
     gene            8561..8827
                     /locus_tag="PXE26_001305"
     CDS             8561..8827
                     /locus_tag="PXE26_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HDL5593893.1"
                     /translation="MSEKLSEQENWYVCSLVVQAKPEKLEEVKAEILKIPHTEIHGEK
                     TDEGKLVVTIESNVHLALSDRIDQVRDIKGVIVVSLISNYIDEQ"
     gene            8866..11364
                     /gene="napA"
                     /locus_tag="PXE26_001306"
     CDS             8866..11364
                     /gene="napA"
                     /locus_tag="PXE26_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005566990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase catalytic subunit NapA"
                     /protein_id="HDL5593894.1"
                     /translation="MELNRRDFMKANAAVAAAAAAGIMIPVKNVQADDTGIRWDKAPC
                     RYCGTGCSVLVGTKDGKVVATQGDPDAEVNRGLNCIKGYFLSKMMYGADRMQEPMLRM
                     KDGKFDKNGDFTPVSWDQAFSIMAEKIKTTIKNDGPNAVGMFSSGQTTIFEGYAKVKL
                     WKGGFRSNTIDPNARHCMASAAVAFMRTFGMDEPMGCYNDIEKTDAFVLWGSNMAEMH
                     PILWSRISDRRLSDNKVKVVVMSTYEHRSFELADTPIIFKPHSDLAILNYIANYIIQN
                     DKVNWDFVNKHTKFKRGETNIGYGLRPEHKLQQNTNAKTAGKMYDSDFEEFKKIVAPY
                     TLEEAHRISGVPKDQLETLAKLYADPNQKLVSFWTMGFNQHTRGVWVNHMMYNVHLLT
                     GKIALEGCGPFSLTGQPSACGTAREVGTFIHRLPADMVVTNPKHREIVENSWKLPAGA
                     IPDVPGFHATAQSRALKDGKMKFLWQMCTNNMQGGPNINEEIFPGWRNPETFIVVSDP
                     YPSVSAVAADLILPTCMWVEKEGAYGNAERRTQFWRQQVKGPANARSDTWQLVEFSKY
                     FKVEEVWPEELLAKAPELRGKTLYEILYRNGKVDSYQVPTNIPGYMNDEADHFGYYIQ
                     KGLFEEYAEFGRGHGHDLADFDTYHKVRGLRWPVVKDEKTGEYKETLWRYREGYDPYV
                     KAGEEVAFYGNADKKAVILGVPYEPPAEAPDEEYDLWFCTGRVLEHWHTGTMTRRVPE
                     LHKAFPTNLVWMHPNDAKKRGLRHGDKVKVISRRGEYVSNLDTRGRNKCPEGLIYSTF
                     FDAGQLINKVTLDATDPISFETDFKKCAVKVVKA"
     gene            11453..12358
                     /gene="napG"
                     /locus_tag="PXE26_001307"
     CDS             11453..12358
                     /gene="napG"
                     /locus_tag="PXE26_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HDL5593895.1"
                     /translation="MKMDPNRRQFLKNATRTAAGVCGVGMILGLQQQQSFARQGVALR
                     PPGALPEQDFLSACTRCGQCVQACPYDMLHLASLISPVEAGTPYFIARDKPCEMCLDI
                     PCMNACPTGALSEELKDIDDARMGLAVLLDHETCLNWQGLRCDVCYRVCPLIDKAITL
                     EKVHNDRTSIHAKLIPTVHSDACTGCGKCEQACVLEEAAIKVLPMDLAKGLLGRHYRL
                     GWQEKQNAGKSLIEDVHPEGLRPAYDARMPEGLHEPVYQHMEVKPDVKVATPSRATQN
                     YVPNSTTVEAPEHFPDLDLNLKGVK"
     gene            12358..13236
                     /gene="napH"
                     /locus_tag="PXE26_001308"
     CDS             12358..13236
                     /gene="napH"
                     /locus_tag="PXE26_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HDL5593896.1"
                     /translation="MAANSPKNAGLEARQKLGWWHAYRFLILRRLSQLSIILMFLSGP
                     LWNVWILKGNYSGSLLLDTVPMTDPLMTAEVLATGYRPEWTVLVGALIMVAFYGIVGS
                     KLFCSWVCPMNMVTDTAAWLRRKLGIRQTAKIPRNLRYVILAVILVGSAISGTLLWEW
                     INPVAALGRVFVFGLGATLWLVLVVFLFDLLVAEHGWCGHLCPIGATYALIGAKSLIK
                     VKVVDRNRCDNCMDCYNVCPEPQVLRVPLHGKPEESTVILSKDCITCGRCIDVCAENV
                     FAFGMRFQGSIDVKNI"
     gene            13282..13710
                     /locus_tag="PXE26_001309"
     CDS             13282..13710
                     /locus_tag="PXE26_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HDL5593897.1"
                     /translation="MRKYLAFILAVMSGFAMAEAPKLSGSIDETTESVAPGFHNPQKD
                     VGTIPTTFPFQPPLVPHSIRGLQVSKNVNHCLGCHAIEPSKTTGATRLPPSHFTDRDG
                     KVYENESPRRYFCLQCHVQQTDVNPIIQNKFESVRESQAK"
     gene            13721..14329
                     /locus_tag="PXE26_001310"
     CDS             13721..14329
                     /locus_tag="PXE26_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HDL5593898.1"
                     /translation="MLRRFCNWLRSPSKMAIGAVILISALGGIFAWSGFNAGLAMTNT
                     EEFCSDCHMNDVVPEYRASAHYSNRSGVKAICSDCHVPHEFFPKWQRKIIAAKEVYAH
                     FTGKVDTKEKFEAHRGEMAEREWARMKANSSQECRNCHNFDDMDFTQQKNIAQQMHAL
                     AQEQGKTCIDCHKGIAHNLPHMEAIQKNFIPDDLLKKAEEKK"
     gene            complement(14391..15233)
                     /gene="cpdA"
                     /locus_tag="PXE26_001311"
     CDS             complement(14391..15233)
                     /gene="cpdA"
                     /locus_tag="PXE26_001311"
                     /EC_number="3.1.4.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-AMP phosphodiesterase"
                     /protein_id="HDL5593899.1"
                     /translation="MDAKRMHEYIKLPVTGVIKLLQITDPHLFSNPEETLLNVKTVKS
                     FSAVIEQINKQAKQYFDLVLATGDLIQDNNIAGYHYFAQITNSLNSPIVWLEGNHDVQ
                     PSMSEILAQYKHILPHKQILLGEQWQLLMLNTQVVGMPYGELSYSQLKWLEEKLAQYP
                     QRFTLVALHHNILPTNSAWLDQHSLKNSNELSEIFAKFKNVKAIVHGHIHQQVDDIWH
                     GIPIYATPSTCIQFKPNCDQFTLDLQPQGWREIELHENGTIETVVKRLNSNDFLPNVN
                     AIGY"
BASE COUNT         4560 a         3017 c         3373 g         4393 t
ORIGIN      
        1 aattaaagaa cctaaaacat tgttgcttta ggttctttgt tgttactagt tcattatatt
       61 gcttaagagt gtgttgtttc caaatcctcc agatttagtc attacagtga tgcctgagta
      121 gttgcccttt tcaatggagc ataaaggaac gcccggtact accgcatatt gtacattcat
      181 ctctgttaca ttcatttgat ctaataatgc tgctgcacca tctccaccaa ataatataag
      241 gctatcaaat ttttcattat caaggcagaa tttacttaaa tcagctaaat gttgagaaat
      301 ttctttagaa gtttccgtga tattggcaga ttttgcattt acaacttttg cagggtttgc
      361 ccgaataata acatgatctc tactaaaacg tattagagcg tttaattgta gtttcagtga
      421 atgttctgat tgcgagtagt taatcaactg tgaaggcgaa ggattaaata caatagattt
      481 tcctcctaaa gttgaaatat attcatcaac ttgcagttgg cttgtttcgt gaattgaggt
      541 tacgacaatt aatgctctac ctaatttaag atttcgctct ggttgttgtt gattttggat
      601 atttttcaac ttctgtgcca atccggctga gccaacagga ataattttat tacctatgtg
      661 atttatgact tgggcaatca ttgagagatc ttcgtgcgtt ttagcatcaa taacgatctg
      721 tttatattca ctattttcaa tagatgcctg caaattatcg accgtatcac acgggattac
      781 ttgagcatca ggcaatagtt tttgcataga agatgaatgc acagggcaga taggatcttt
      841 tcctgaagca gtttcattta caggaacacc attaacatat aaatgaccag cttctatagt
      901 tcttcccatt tctggatatg caggacaaat aattgcttta acatcgggat ataaaccagc
      961 ccaagcttta atagcacctt caatctgata tttaacagag cctctcattg tggaatcaat
     1021 tttaaggtaa atttgcccga tactattttg aatagcattg ctaattgcaa tttgagtcag
     1081 ctcttttgct ttctctccaa ttgctcttga atctgtagaa acagaaatta cttgggcttt
     1141 atcaggatga atttgggcta atgccgaaac tttagttttt aagacagtgt caaatcctga
     1201 ttcagcaaac ataaccgcgg tatcatttgc accagtaagg tcatcagcaa taactaagag
     1261 tgtctctttc atagattttc tccttttata gtgtcttgtt ctaagccacc ttgacgtttt
     1321 aaaacccacg ctgcaaataa tggagctaag attgctgaaa ctaatacagc tgcggcaatc
     1381 tgtgcagtcg cagtttgaac aaaaggtgct aatgtagggt ctgcttgagc aacaatttca
     1441 ggtgtaataa tggcatttcc agcagtagtt cctgctgcaa acccgattcc tgattgatta
     1501 ccacgtctta aaattgtttt gtaaccgata aatacaagaa aacctgtaaa gagagaagct
     1561 acgataccta aaataattcc tgttgctcct ccagtaataa tagattgcag attgattcct
     1621 gttcctaatg caaaagcaaa gaaaggaatg actattgcac ctgttggttt cattaactct
     1681 gtccatttag gatctaagtt accaataacc ataccaataa taagaggaat aacagctgca
     1741 agcattaatg aaagaggaat atctgctaat cctgatacac ctaaaaatag taaaacaaag
     1801 aaaggtccat cattaacagc cgaagcgaca taagctcctt tatctctata atcaccatat
     1861 ttccctgtaa acgctaacca aataccacca tttgaatttg caacaacagt tagcatagct
     1921 aataaagaaa cgcccataac accatcatta cctacccata atcctaaaat cacaactaaa
     1981 agagcgggaa taatagtttt aaatagtaat acaacaccgg tatgggcaag tacaggtcca
     2041 gaacttctca cggtaatttg catacctgta gcgaaaatta atagtgcaat aagtggtcct
     2101 gctgatgatt tgaataaagc cgtcgtaaat gaacctaaat ttaaaaattc aggaaagaat
     2161 gtaccaataa tagaaccaag aattagcggt attaccattg caccgccagg aattttattc
     2221 ataccatcat atatcgggac gatggattta gatgtttgag tagacatatt aatctcctta
     2281 gtgtgtcgca tatttgatat ttgccatttt tgcacccaaa tagagtgctt cagtcatact
     2341 acgactatct gctgttcctt tgcctgctat tgggaaagca gttccgtgat cgacagatgt
     2401 tcgaataaat ggaagaccga cagtaacgtt tacacctgta tcaaagccta ataatttgat
     2461 agggatatgc ccttgatcgt gatacatcac aacaacaata tcgaattcat ttaggttagc
     2521 tgcacggtga aataaagtat ccggagggac aggccctgta acattaaacc ctttggcttg
     2581 agcctcttga attgcgggaa caatttcttt ttgatcttca tcgccaaaca ttccattttc
     2641 acctgaatga ggatttaaac cagcgactgc aatacgaggt tctttaaacc caagaatgcg
     2701 agcattttct tctgctaaat caataactgt agcaactcgt tctttggtaa ttaaatcaca
     2761 ggctttacga agttggacgt gagtagtaac gtgaataaca ttgagttttt cactggttag
     2821 catcattgag taatctttag tattactgag ggttgcaagg atctctgtat ggccaggaaa
     2881 tggtttacca cctgcgtgta gggcttcttt attcagtggt gctgtaacaa tagcgtggat
     2941 ttttcctccc attgctaaat taactgcctc ttcaatatat tcataagctg cttttccagc
     3001 acgcggatca acttgagcaa aaggcaaatc ttcaggcagg ttattcaaat ctaaaatatc
     3061 aataacgcca tattcggcta caaagttatc tagattattg agaattctta atttcaattc
     3121 tgaatgaaca ataggtaagg ctcgttgtat aatttttcga tcaccgatca caacagggtg
     3181 tgctaactca taaatccgtt gattagctaa tgctttaata ataacttctg gtccgatacc
     3241 ggcggcatct cccatcgtaa ttcccaatat aggtttcata tttactcctt gattgaaatt
     3301 aatcattttg aacgaagtat agcttatatg aaatcataaa agtgtgataa acatcacaaa
     3361 agtgaacttt tttaatctta ttgatttaat ttaatcaatt ttaaggtggt aaattggata
     3421 gggtatgaaa gtgaaaggca tttattgcta gataaaagct tcccttttca ataaaaaaga
     3481 gtatcatacg ctctcttaaa cgtaacccta catttaagtc tgtttccaac ctatcccaat
     3541 ttctttattc cttaggggca tatagggtaa aaacaaaaaa gctgaaacgc tttttttaat
     3601 aagtagcgag tcaaatgccc catggcatct attcttttag gaatagaaag cttaggcttt
     3661 ccgcaaggca cccgacttat ttttttcacc tcttgtagaa ggtttatttt caatgacaat
     3721 taaaactcct attcaagccg ttcttgcttc aaaccaatat tttttagatc gccaagatgc
     3781 aatggaatca aacgtgcgta gctacccacg taaattacct tttgcttacc aaaaagcaca
     3841 aggcgtttgg gtaactgatg ttgaaggcaa tgaatacctc gatttcctag caggtgcagg
     3901 aacgcttgca ttaggtcata accaccctaa attaatccaa gcagttaaag atgtattaga
     3961 cagtggttta cctttacact cgttagatat tacgactccg ttaaaagatg cttttacgga
     4021 agaattactc tctttctttc caaaagataa atatatcctc caatttactg gcccgtctgg
     4081 tgcagatgct aacgaagcgg caattaaatt agccaaaacc tacactggtc gtggcaacgt
     4141 aattgctttc tccggtggtt tccacggaat gacccatggt gcgttatcgc tcaccggtaa
     4201 tttaagtgcg aaaaatgcag tacaaggctt aatgccgggc gtacagttta tgccttatcc
     4261 gcacgaatac cgctgtccgt ttggcattgg tggcgaagcc ggtgcaaaag cagttgaaca
     4321 ttattttgag aactttattg aagatgttga aagtggtgtg gtaaaaccgg cagcggtgat
     4381 ccttgaagcc attcaaggtg aaggcggtgt ggttccggct ccaatcagct tcttacaaaa
     4441 agtgcgtgaa gtcactcaaa aacacggcat cttaatgatt gtggacgaag ttcaagctgg
     4501 tttctgccgt tcagggaaaa tgtttgcctt tgaacacgca ggcattgagc cggatatcgt
     4561 agtaatgtca aaagcgattg gtggtagctt accgcttgcg gtattagcga tcaaaaaaga
     4621 gtttgacgct tggcaaccgg caggtcatac cggtacattc cgtggtaacc aattagcaat
     4681 ggcaaccggc tatgtatcgc ttaaaattat gcgtgaagag aatttagcga aaaacgcaca
     4741 agagcgtggc gaatacttaa ctaacgcatt acgtgaatta agcaaagaat taccttgtat
     4801 tggcaatgtg cgtggtaaag gcttaatgat gggaattgat attgttgatg aacgtcagcc
     4861 aaaagatgca acaggtgcat acccgcgtga ttgcgattta gccgttgcaa ttcaaaaata
     4921 ctgctttaaa aacaaattgt tattagagcg tggcggacgt ggcggtaatg tggtgcgtgt
     4981 tctttgtgcc gtgaatatta cccaagcaga atgtgaagag tttattaaac gctttaaaca
     5041 atctgttgct gaagcagtga aagcggtgcg tggttaatag ttagaatggt aggagcgaaa
     5101 catttttcgc cctaatgtaa aaaggggcga atatttattc gcccctacac caataggata
     5161 gaaataatgt caaacctaga aaaacacaga caatccctgt tttgtagcga tccaaaatcg
     5221 attgcggatt atgaatcggc aatgaataac gctgtgaaag cggtttcaga ctggctgaaa
     5281 gaagaaaaaa tgtacaccgg tggctcaatt aaagagttgc gtgccaaaat caacggtttt
     5341 aacccaaccc aagctggtgt gggcgtgcaa aaatcactgg agcatttggt ggaaattttc
     5401 ttaaagccaa gcctcaaagt tcaccaccct cattctttgg cccacttaca ttgcccgaca
     5461 atggtaacca gccaaattgc agaagtgtta attaatgcca ccaaccaatc aatggactct
     5521 tgggatcaaa gcccggcagg ttcgattatg gaagagcatt taattgactg gctacgtcaa
     5581 aaagtcggct atggcaaagg aacttcagga gtctttacct caggtggtac gcaatcaaac
     5641 ctgatgggcg tattattggc tcgtgactgg gcgatagcga accattggaa aaaggcagac
     5701 ggttcagagt ggtcggtgca agccgacggt attcctgccg atgcaatgca aaaagtgaaa
     5761 gtggtttgtt ccgaaaacgc tcacttctcg gtgcagaaaa atatggcaat gatgggaatg
     5821 ggtttccaat cggtagtgac tgtaccgtca aatgccaatg cacaaatgga cgttgaagct
     5881 cttgcgaaaa cgttggcgga tttaaaagcc gaaggcaaaa ttgtggcttg tatcgtcgca
     5941 accgcaggga cgaccgatgc cggtgcgatt gatgatttaa aagcgatccg taaattagcc
     6001 gatgaacatc aggcttgggt tcacgttgat gctgcttggg gtggtgcatt attactgtcg
     6061 aaagatttcc gccacttctt agacggcatt gaattaaccg attccattac ccttgatttc
     6121 cacaagcatt tcttccaatc aatttcgtgt ggggcattct tgctaaaaga tgaagcgaat
     6181 taccgcttta ttgattacaa ggcagactac ctgaattcag aatatgacga agaacacggc
     6241 gtgccgaatt tagtgtcaaa atcattgcaa actacccgcc gttttgatgc gttaaaatta
     6301 tggtttaccg ttgaagcctt gggtgaggag ctatacgctt caatgatcga ccacggggtt
     6361 tatctttcta aagaagtgga agcctacatt aatgccaccg atggcttgga aatgttagtg
     6421 ccggcacaat ttgcctcagt cttattccgt gtcgtaccac aaggttaccc ggcagaattt
     6481 gtggatacct taaaccaaaa tgtggcagat gagttatttg ctcgtggcga agctaacatt
     6541 ggtgtgacca aagtcggtga gcatcaatca ctgaaaatga ctactttaag cccgattgca
     6601 acgcttgaaa acgtaagagc attattagct caggtgttgg cagaagcaga tcggattaaa
     6661 gattcgattg taaatggaac ttatgttccg ccaattgatt aaactgcgtt aaaaataaaa
     6721 aggtgttttc gacatttatt tgtgttttaa tgtttgcatt cggtagtctt tatcgaatgc
     6781 aaattttttt aacaaggagt ttttatgaaa aaagtcctgg gtttaacatt gatggcaatg
     6841 gcgttatcgg cgtgtaattc aactgcttcc aacggttctt cacaagcaaa tacaggtgtt
     6901 gcaccggcga atgtgattag cgtgaaacag gcgttagcgg cagcagatga cagctacgtg
     6961 acggtagaag gcacactctt aaacaaagtc ggtgacgaaa cttacttatt taaagatgcg
     7021 acagggcaaa tccgtgttga gattgacgat gaagtatggg caggtcagca cgttggtagc
     7081 gaaggcaata aagtccgttt atacggagag attgacaaag gtttcaataa aaccgagtta
     7141 gatgttaaaa cactcactgt tctgtagaag atcaaacctt aatttggttc cccgccttgt
     7201 ttggcggggt ttttacgtta attaatcaaa ccatcctttt gcaaaaaaac gcaaaattat
     7261 accgcttgtt ccttcaatat tgtgctacaa gatgctgtga tttgctgcaa aatagcggtg
     7321 taatcagtct cttttaaacc aatattaccg aaatagtgca tttttacatc acgaatccca
     7381 cagaactcaa acagcccttt tcccagcgta tgttcaaatg ctgctaaaaa gccttttcgt
     7441 tcatattttt cattggaatt accgagcgtt acaaattgtt gcattttttt gccggtcagc
     7501 aagccgatac tttcaatttc cccgttacga taggcaaaat cataacttaa caccctgtct
     7561 aaatagcctt ttaaaattgc cggaaagccc atccaccaaa gcgggtaaat taacgtaatc
     7621 acatcagctt caagccaata ttgatgctca attgccacat ctgcttcata gtgtttactg
     7681 agtgtgcctt gaaattccgc ccagtctaat atcggcttga agttgagttg gtagagatct
     7741 cgtacaacca ccttatttgg aacggaagct gctatcgttt tttccaaaat cgcatggtta
     7801 aagctggagg gattcgggtg tgcgtaaata atcaggtgat tcatagcgtt ttcctttact
     7861 gtgtcgaggc agctactaga agattttagc gaaactttct ttgatgaaaa tcaatatttt
     7921 ggcgaatata ccggcaaata ccccgtttga ggaatgaacg gttttaagtg aacattagat
     7981 aatttagcct attatagtga tgagtaaaaa ggtgttttct tgactgatta tcctaatcaa
     8041 tcacttcctc gccgtagctt tttgcgaggg caatttttag actcgttaaa aagccaaaaa
     8101 gtcagtcagc aagggtatga gccgattcgt ccgccttggg ctaatttagc aaatttttta
     8161 gaaaaatgca ccgcttgcgg taactgcatt caggcttgcg aaacccagat tattgtaaaa
     8221 ggtgctgcgg gctaccctga aattgatttt agccgtggtg aatgcacttt ttgtgaaaaa
     8281 tgtgtgcatt cttgcgaggc agaggtattc cgagcagttt cagaacagcc ttggagccat
     8341 aaaattgaga ttcaagccgg ctgtttatta aagctcggaa cggaatgccg aagctgtggc
     8401 gatagctgtg agatgagagt gattcgtttc cgcccgagtt taggtggcat tgccgaaatg
     8461 gtattaaatt tggaaagctg taatggctgt ggggcttgtt tgagcgtttg tccgacaagt
     8521 gcgataaaaa ttcagccatt acaaacacag gcaaacagag atgagtgaaa aattatccga
     8581 acaggaaaac tggtatgtgt gcagtctcgt ggtgcaagca aaaccggaaa aattggaaga
     8641 agtaaaagcc gagattctga agattcctca taccgaaatt cacggtgaga aaacagatga
     8701 aggcaaattg gtcgtgacga ttgaaagcaa tgtgcattta gccctttccg atcgaatcga
     8761 tcaagtaaga gatattaaag gcgtgattgt ggtgtcttta atttctaatt acattgatga
     8821 acagtgatta atgattattt ttgaagccaa acgtgggaca tagttatgga actcaatcgt
     8881 agagatttta tgaaagcgaa cgccgctgtg gcagctgctg cagccgcagg aattatgatt
     8941 cctgtgaaaa acgttcaggc agatgacacc ggtattcgtt gggataaagc cccttgtcgt
     9001 tactgtggta caggttgtag cgtgctagtc ggtactaaag acggtaaagt agtggcaacc
     9061 caaggtgacc cggatgcaga agtaaaccgt ggtttaaact gtattaaagg ttatttctta
     9121 tccaaaatga tgtacggtgc agaccgtatg caagagccaa tgttgcgtat gaaagacggt
     9181 aagttcgaca agaacggcga tttcacgccg gtttcttggg atcaagcctt tagcattatg
     9241 gcggagaaga ttaaaaccac tattaaaaat gacggcccga atgctgtagg tatgttctca
     9301 tcaggtcaaa caaccatttt tgaaggttat gcgaaagtga aactttggaa aggtggtttc
     9361 cgttcaaata cgattgaccc gaatgcccgc cactgtatgg cgtccgctgc ggttgccttt
     9421 atgcgtacct ttggtatgga cgagccgatg ggctgctata acgacatcga aaaaaccgat
     9481 gcgttcgtgc tttggggttc aaatatggca gaaatgcacc cgattttatg gtctcgtatt
     9541 tctgatcgcc gtttatcaga caataaagtg aaagtggtgg taatgtccac ttacgaacac
     9601 cgttcgtttg aattagccga tacaccgatt atcttcaaac cacactcaga tttagcaatt
     9661 ttaaactaca ttgcgaacta cattatccaa aacgataaag taaattggga ttttgttaac
     9721 aaacacacca aatttaaacg gggtgaaacc aatatcggtt acggtttacg tcctgaacac
     9781 aaattacaac aaaataccaa tgcgaaaact gccggtaaaa tgtatgacag cgattttgaa
     9841 gagtttaaga aaatcgttgc cccttataca ttagaagaag ctcaccgtat ttcaggcgtg
     9901 ccgaaagatc agcttgaaac attagcgaaa ttatatgcag atcctaacca aaaattagtg
     9961 tcgttctgga cgatgggctt taaccaacat acccgtggtg tgtgggtaaa ccatatgatg
    10021 tacaacgtcc atttattaac cggtaagatc gcattagaag gttgtgggcc gttctcactc
    10081 acgggtcagc cgtccgcttg tggtactgcc cgtgaagtgg gtacatttat tcaccgctta
    10141 ccggcagata tggtggtcac aaatccgaaa caccgtgaga ttgtagagaa ttcttggaaa
    10201 ttaccggctg gagcaattcc tgatgtaccg ggctttcacg ctacagctca aagccgtgcc
    10261 ttaaaagacg gcaaaatgaa attcttatgg cagatgtgta ccaacaatat gcagggcggc
    10321 ccgaatatca atgaagagat cttcccgggc tggcgtaatc ctgaaacctt tattgtggtt
    10381 tcagatccgt acccatctgt ttcagcagtg gctgctgact taattcttcc aacctgtatg
    10441 tgggtggaaa aagaaggggc ttacggtaac gcagaacgcc gtacccaatt ctggcgtcag
    10501 caagttaaag ggccggcaaa tgcccgttca gatacttggc agttagtaga gttctctaaa
    10561 tacttcaaag tagaagaagt atggccggaa gagttattag ctaaagcacc ggaattgcgt
    10621 ggtaaaactc tatacgaaat cctttaccgc aacggcaaag tagatagcta ccaagtgcca
    10681 actaacattc cgggctatat gaatgacgaa gcagatcact tcggttacta cattcaaaaa
    10741 ggcttatttg aagagtatgc ggaatttggc cgtggtcacg gtcacgattt agccgacttt
    10801 gacacctacc acaaagtacg tggcttacgt tggccggtgg taaaagacga gaaaaccggc
    10861 gaatacaaag aaactttatg gcgttaccgt gaaggctatg acccatacgt taaagccggt
    10921 gaagaagtgg cattctatgg caatgcggac aaaaaagcag tgattttagg tgtgccatac
    10981 gaaccacctg cggaagcacc ggacgaagaa tatgacttat ggttctgtac cggtcgtgta
    11041 ctagaacatt ggcacaccgg tacgatgacc cgccgtgtgc cggagttaca taaagcattc
    11101 ccaaccaact tggtttggat gcacccgaat gatgcgaaaa aacgaggctt acgtcacggt
    11161 gataaagtga aagtgatttc acgccgtggt gaatatgtat cgaacttaga tacccgtgga
    11221 cgtaataaat gtccggaagg tttgatttac tcgactttct tcgatgccgg tcagttaatc
    11281 aacaaagtga cacttgatgc gactgatcca atttcatttg aaaccgactt caaaaaatgt
    11341 gcggttaaag tggtgaaagc ttaattgtag gggcaaatta tttgcctcag acaagcggtc
    11401 aaatttgcaa atttttttac aaaaacgacc gcttacctaa gaggaaccca caatgaaaat
    11461 ggatccaaat cgtcgccagt ttttaaaaaa tgcaacccgt accgcagccg gtgtttgcgg
    11521 tgtaggaatg attttagggc tacagcaaca acaaagtttt gcccgtcaag gggtagcact
    11581 acgcccaccg ggtgcattgc cggagcaaga tttcctgagt gcttgcaccc gttgcggaca
    11641 atgtgtgcag gcttgtcctt acgatatgtt gcatttggca tcgcttattt caccagtgga
    11701 agccggcacg ccatacttta ttgcacggga taaaccttgc gaaatgtgct tggatattcc
    11761 ctgtatgaat gcttgcccaa ccggggcatt aagcgaagag ctaaaagaca ttgacgatgc
    11821 acgaatgggg cttgcggtgt tgctcgacca cgaaacttgt cttaactggc aaggcttgcg
    11881 ttgtgacgtg tgttaccgtg tttgtccgtt aatcgacaaa gcgattactc ttgagaaagt
    11941 gcataacgac cgtacctcga ttcacgccaa actgattccg accgtgcatt ctgatgcttg
    12001 caccggttgc ggtaaatgtg aacaggcttg cgtattggaa gaggcagcga tcaaagtgtt
    12061 accgatggat ttagccaaag gcttgctcgg tcgtcactat cgtttaggct ggcaagagaa
    12121 acaaaatgcc ggtaaatcgc tgattgaaga tgttcaccca gagggtttac gcccagctta
    12181 tgatgccaga atgccggaag gcttacacga gccggtgtat cagcatatgg aagtaaaacc
    12241 tgatgtgaaa gtggctacgc caagtcgggc gacacaaaac tatgtgccga actctacgac
    12301 ggtggaagct ccggagcatt tccctgattt agacttgaat ctcaaggggg tgaaataatg
    12361 gcagccaatt ctccaaaaaa tgcgggctta gaggctcgtc agaaactagg ttggtggcac
    12421 gcttaccgct ttttgatttt aagacgctta agccaactca gcattatttt gatgttttta
    12481 agcggcccac tttggaatgt ctggatttta aaaggaaact acagcggtag cttattacta
    12541 gataccgtgc cgatgacaga cccattaatg accgctgaag tgctggcaac cggctatcgc
    12601 cctgaatgga cggtattggt tggggcgtta attatggtgg cgttttacgg cattgtcggc
    12661 agcaagctgt tttgtagttg ggtctgcccg atgaatatgg taacagatac tgctgcttgg
    12721 ttaagacgca aactcggtat tcgccaaact gctaaaattc cacgcaattt acgctatgtg
    12781 attttggcgg tgattttagt cggtagtgcg atttccggaa cactattgtg ggagtggatc
    12841 aacccggttg cggctctcgg tcgggtgttt gtattcggtt taggggcaac gctttggctg
    12901 gttttagtgg tgttcttgtt tgacttattg gtggcagaac atggctggtg tggtcatctt
    12961 tgcccgattg gtgcaacgta tgccttaatt ggggcgaaaa gcctgattaa agtcaaagtg
    13021 gtagatcgta accgttgcga taattgtatg gattgttaca acgtttgtcc ggaacctcaa
    13081 gtgttgcgtg tgccgctaca cggtaaaccg gaggaaagca cggttatctt atctaaagat
    13141 tgcattacct gcggacgttg tattgacgtt tgtgccgaaa atgtatttgc cttcggaatg
    13201 cgttttcaag gcagtattga tgtgaaaaat atttaatttt tatctttttg aaaacaagaa
    13261 ttttaatgga gtgaacctca aatgagaaaa tatctcgcct tcattttagc cgtgatgtcc
    13321 ggctttgcaa tggcggaagc ccctaagtta tccggatcaa ttgatgagac aaccgaaagt
    13381 gttgcaccgg gatttcataa cccacaaaaa gatgtgggca cgattccaac cactttccct
    13441 ttccaaccac cgcttgttcc acatagtatt cgtggcttac aagtgagcaa aaacgtaaac
    13501 cattgtttag gttgccacgc tattgaacca tctaaaacca caggtgcgac ccgtttaccg
    13561 ccaagccatt ttaccgaccg tgatggcaag gtgtacgaaa acgaatctcc tcgtcgttat
    13621 ttctgtttgc aatgccacgt gcaacaaact gatgtaaacc cgattattca aaataaattt
    13681 gaatctgtac gtgaatctca agctaaataa ggagtaagta atgttgagaa gattttgtaa
    13741 ctggttacgt agcccaagca aaatggcaat tggtgctgta atccttattt ctgcattagg
    13801 tggtattttc gcttggagtg gttttaatgc agggttagca atgacaaata ctgaagagtt
    13861 ttgttcagat tgccatatga acgatgttgt gccggaatac cgtgcctctg ctcactattc
    13921 aaaccgcagc ggtgtgaaag cgatttgttc agattgccac gtaccgcacg aattctttcc
    13981 aaaatggcaa cgtaaaatca tagccgcaaa agaagtttat gcacacttta ccggtaaagt
    14041 agataccaaa gagaaatttg aagctcatcg tggcgaaatg gcagaacgtg aatgggcacg
    14101 tatgaaagcg aacagctctc aagagtgccg taactgtcat aattttgatg atatggactt
    14161 cactcaacaa aaaaacattg cgcagcaaat gcacgcattg gcacaagagc aaggtaaaac
    14221 ctgtattgac tgccacaaag ggattgcaca caatctccca catatggaag cgatccagaa
    14281 aaactttatc cctgatgatt tgctgaaaaa agcagaagag aagaaataac ttaacgtgtt
    14341 tcaatagaaa accctcaatt tccattgagg gtttcttttt agtagccaag ttagtaacca
    14401 atggcattga catttggtaa aaaatcgttg gaatttaacc gcttgacgac cgtttctatc
    14461 gtgccgtttt cgtgcaattc aatttcacgc cagccttgtg gttgtaagtc taaggtaaac
    14521 tggtcgcaat tcggcttaaa ttgaatgcaa gtagatgggg tggcataaat cggaatacca
    14581 tgccaaatat catcaacctg ctgatgaata tgaccatgca caatcgcttt tacattctta
    14641 aattttgcga aaatctcgga taattcattg ctgtttttta agctatgctg atccagccac
    14701 gctgagtttg tcggcaaaat attgtggtgc agagcaacca aggtaaaccg ttgcggatat
    14761 tgtgccaatt tttcttctaa ccatttaagc tgtgagtaag agagttcgcc ataaggcata
    14821 cctaccacct gggtatttag catcagaagc tgccattgct caccgagtaa aatttgttta
    14881 tggggaagga tatgtttata ttgcgccaaa atttctgaca tactcggctg aacatcgtga
    14941 ttcccctcta gccacactat cggcgagttt agcgaattag ttatctgtgc aaaatagtga
    15001 taaccagcaa tattgttatc ttgaatcaaa tcacctgtgg caagaactag atcaaaatat
    15061 tgcttcgctt gtttgtttat ttgctcaata actgccgaaa aactttttac tgttttgaca
    15121 ttaagtagag tttcctccgg attggagaaa aggtgagggt cagttatttg taataactta
    15181 attacccctg ttacgggtaa cttaatatat tcgtgcattc gttttgcatc cattcaaatt
    15241 ctagtaattt ttaactggtg agattctatc agtaagctaa aagtaaaaat gtggactatg
    15301 ccgcattttt gaaaaaaagt gagattaatc aaaaaaaatt tat
//
LOCUS       DANLZD010000060        15103 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.060, whole genome shotgun sequence.
ACCESSION   DANLZD010000060 DANLZD010000000
VERSION     DANLZD010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15103)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15103)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15103
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.060"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            12..359
                     /locus_tag="PXE26_001312"
     CDS             12..359
                     /locus_tag="PXE26_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593900.1"
                     /translation="MFREEAIEYQSKKWKSTAVLFSRVPALVVFSISFFIFTAFILFI
                     VFGNYTRRETVVGELVMQSHPILLSAPKSGYISENYIQPHQQVKKRAIRWLKLRWIEL
                     RIAKILMLILFFR"
     gene            356..1273
                     /locus_tag="PXE26_001313"
     CDS             356..1273
                     /locus_tag="PXE26_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HDL5593901.1"
                     /translation="MKSQIQATEQAITALYKNKSETINSLEKQIKNSQKIYQDKQSYL
                     VEIEKSMNDYAELVKRYEKLLKVGHSSHDEVNIQKSRYFQQKSLFNELKQELIQLKST
                     QLSLENEIETRKTEFNNQIIRYEMQKSDLNIRLMEFESVSDIIVNASLDGKIESTSVT
                     VGQIIKENDPLAQILPQNKGNYQLVMWVPNSAISFIKQGDEVNIRYEAFPFEKFGQFK
                     GKITSISTLPASLQELSFYKNLPVNLEQGIPLYKILIELADQNVKYNDTSLYFMSGMK
                     AEATLFLEKRKLYEWIFFPMYQLRKNMEQ"
     gene            1273..2064
                     /locus_tag="PXE26_001314"
     CDS             1273..2064
                     /locus_tag="PXE26_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase C39"
                     /protein_id="HDL5593902.1"
                     /translation="MTGIKQLKFDFRRRIPVILQTETAECGLACLAMMLGYYDKNTNL
                     FELRSQYGTSSRGVTLHTLISIANDCGLITRPLSLELDEVPQLRLPCILHWDFNHFVV
                     LTHASEKQFIIHDPAFGKRKLSRAEFSNHFTGVALEVWSEVKFEKSNNENTISLYETL
                     KHISGIKGALVKIFALSMLIELIALLMPIGTQLVMDHVMQAKDQSLLLIICIGLFLFT
                     LFRTMVSMFRAWVSLKMNYLIDFQWTASFFSHLLKLPLDFFENAK"
     gene            2442..3359
                     /locus_tag="PXE26_001315"
                     /pseudo
     CDS             2442..3359
                     /locus_tag="PXE26_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167835.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            complement(3361..4029)
                     /locus_tag="PXE26_001316"
     CDS             complement(3361..4029)
                     /locus_tag="PXE26_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDL5593903.1"
                     /translation="MKYLYALIFSLFFSSVYAAERQLQCKVVGISDGDTLTCLVNKTP
                     LKIRLQHIDAPEQAQPYGNKAKQALAQFVFQQNITAIVSGYDRYQRLLATLYLNDKNI
                     NLALVENGMAWAYTTKREYIEAQDQAQQAKIGLWQDKFPINPSQWRKTHTSTLPQAVK
                     KPENIANQPPTIDCQIKLSCNQIGNYAQAKRYFQQCGWKELDGNNDSIPCNKLYRQEQ
                     KNRN"
     gene            complement(4073..5440)
                     /locus_tag="PXE26_001317"
     CDS             complement(4073..5440)
                     /locus_tag="PXE26_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HDL5593904.1"
                     /translation="MSIDTILNQINSFVWGPPLLILISGVGLYLTFSLKGIQLSQLGQ
                     AFRYMFKPEKGKGQSGDISAFAALSTALAATIGTGNIVGVATAIHSGGPGALFWMWLI
                     ALFGMATKYAEGLLAIKYRTKDRAGFVAGGPMYYIELGMGKKWRWLAKAFAFFGVLVA
                     LLGIGTFPQVNGITHALESTFDVPIIFSAIILTLIVTAIILGGVQRISKIATIVVPFM
                     AIGYVIAALSVILLNMEKVPQAIITIVHAAFNPQAALGGAVGFTVMQAIQLGVARGIF
                     SNESGLGSAPIAAAAAQTKEPVRQGLISMTGTFLDTIIVCTMTGLVIVISGAWAGDVK
                     GAELTTTAFTQGLNSSFGAIIVTVGLVFFAFTTILGWCYYGERCFVYLTRGRTQYIKL
                     YRLLFIALIASAPFLQLDTIWTLADIVNGLMAFPNLIALIALRKVIISETKDFFARLK
                     TGKAE"
     regulatory      complement(5559..5654)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            complement(5825..6877)
                     /locus_tag="PXE26_001318"
     CDS             complement(5825..6877)
                     /locus_tag="PXE26_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDL5593905.1"
                     /translation="MTHSTKTLVAIASIIIILAGIKLSNEIVVPFLLSLFIAIICSPM
                     IKFMTKRKVPLWLAITILLIVFILGFSFLAGIINNTLQEFTNAIPQYKIQLSSRIQVI
                     LELAHRWHIPLTLSQEEIMSKFDPSSIMNLVSKLLMGLSGALSNIFVIFLVVIFMLLE
                     MPVAKYKLALALSPDDDLSNEKEYINQVLEGVIGYLGVKTFVSLLTGGLVWILLEILG
                     VEYAILWAILTFLLNYVPNIGSILAGIPIVIQALVLNGFSIGLGTLIGIVVINMVVGN
                     ALEPKLMGKKLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMACKVALESNKATQKYA
                     VLFSDLEEVPKEQKYR"
     gene            complement(6924..7349)
                     /gene="ruvX"
                     /locus_tag="PXE26_001319"
     CDS             complement(6924..7349)
                     /gene="ruvX"
                     /locus_tag="PXE26_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HDL5593906.1"
                     /translation="MTETTTKTVIAFDFGTNSIGCAVGQSITGTAQGLTTFKAQDGIP
                     NWEEIGKLLQDWKPDMLVVGLPLNMDGTEQPLTQRARKFANRLNGRFNLPVELQDERL
                     TTVEAKAEIFSRGGYKALKKDKVDSISACLILESWFENH"
     gene            complement(7349..7909)
                     /locus_tag="PXE26_001320"
     CDS             complement(7349..7909)
                     /locus_tag="PXE26_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HDL5593907.1"
                     /translation="MLENLQGKFLIATPEMDDDYFERTVVYICEHNPQGAMGVVINTP
                     TDLSVLELITRMDFQMANQRDYKKDQMVLSGGPVNQDRGFIIHTKTANDFIHTYPITD
                     KITLTTSGDVLDSFGTLASPEKFIVCLGCSTWRGSQLEQEIAQNYWIVSDANEKTLFE
                     TGYLERWAEAYEMMGLSSIPSRAGRA"
     gene            complement(7909..8640)
                     /gene="rsmE"
                     /locus_tag="PXE26_001321"
     CDS             complement(7909..8640)
                     /gene="rsmE"
                     /locus_tag="PXE26_001321"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HDL5593908.1"
                     /translation="MRIPRIYQPQPLAGLQSCVLSEDAANHVGRVLRMKQGEQIILFD
                     GSNHVFHATLQAVEKKQIIAKIDSSELDDRESNLPIHLGQVISRGDRMEFTIQKSVEL
                     GVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWC
                     KEQDDMLKLNLHPRAKYTIRELPNVPKAGVRLLIGSEGGLSAEEIAMTESEGFTEVLL
                     GKRVLRTETASLAAITALQVCFGDI"
     gene            complement(8700..8990)
                     /locus_tag="PXE26_001322"
     CDS             complement(8700..8990)
                     /locus_tag="PXE26_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5593909.1"
                     /translation="MPKKLHNIYYTEEALIDLENIAISVSEFTGYASSGIRILEELEN
                     SINNLAIFPTMGVKGAIINTRELYHNGYRIVCEVKENEISIITIVHCSRLYP"
     gene            complement(8971..9144)
                     /locus_tag="PXE26_001323"
     CDS             complement(8971..9144)
                     /locus_tag="PXE26_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593910.1"
                     /translation="MNNPYHNVSQEYLDYLAKKVKQGKEDIKNGRIYSPEEVRKRVIA
                     AAFRGAENAKKVA"
     gene            complement(9316..9903)
                     /locus_tag="PXE26_001324"
     CDS             complement(9316..9903)
                     /locus_tag="PXE26_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593911.1"
                     /translation="MKRSKKTLVLATTFVAALLAGCQSQSNTLTFSTPTPTAVFNTNN
                     QTAAVNVMTQDLRTSREIASYTKNGEVIRLTAVPEVAAMFQQAVQQDLNAKGFQIVQG
                     AANANVVVNIRKFFATVEQGNLRYKADAQVSVKVAVQGSKGNFSKNFNATRGYEGAFG
                     ASNDEIKKVLDQAYSDVVKAIYNDNEIANAIHQFK"
     gene            9995..10306
                     /locus_tag="PXE26_001325"
     CDS             9995..10306
                     /locus_tag="PXE26_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HDL5593912.1"
                     /translation="MSVEQTIIQKIKTEFQPIFFNVENESYMHSSGRGAESHFKLTLV
                     SDKFEGQRTVARHRAVYACLAEELANGVHALALHLYTQGEWEATGGLVPKSLNCLGVG
                     Q"
     gene            10398..10487
                     /locus_tag="PXE26_001326"
     tRNA            10398..10487
                     /locus_tag="PXE26_001326"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10432..10434,aa:Ser,seq:gga)
     gene            complement(10663..11037)
                     /locus_tag="PXE26_001327"
     CDS             complement(10663..11037)
                     /locus_tag="PXE26_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein NlpE N-terminal
                     domain-containing protein"
                     /protein_id="HDL5593913.1"
                     /translation="MKKIALIGFTTAMLGACSLLPQKSVSGTYAGELPCADCEKIQAQ
                     LTLNADKTYQYDTVYFKDKKEYTYRDKGTYSWEPNKPNVIRLEKASGNLAFQVSEQHV
                     ELCDPNGNTVKNSNNYKLGKVR"
     gene            complement(11062..11364)
                     /locus_tag="PXE26_001328"
     CDS             complement(11062..11364)
                     /locus_tag="PXE26_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HDL5593914.1"
                     /translation="MKNSAPKKINDILQNSSLSRIVEKANFINDLNQKIQKRWPESYR
                     GLYRVVNLVDNQLIVSVKNATVRQGLILQQNMLLKQIQTDLPEITQLEFRVNPSVT"
     gene            11485..11805
                     /locus_tag="PXE26_001329"
     CDS             11485..11805
                     /locus_tag="PXE26_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2547 family protein"
                     /protein_id="HDL5593915.1"
                     /translation="MSLFLKHFHRTPFWSQLFLGMVAILALPEIQVAYANESEQETVL
                     NQSFLQYAQSANDIEQQSLFIAELIHKIVEIKPQAVHFCEFFANSYRLDRQNAYPIRA
                     GPQT"
     gene            11864..14590
                     /gene="secA"
                     /locus_tag="PXE26_001330"
     CDS             11864..14590
                     /gene="secA"
                     /locus_tag="PXE26_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HDL5593916.1"
                     /translation="MISKLLTSIFGSSNDRTLKRLRKRVAQINKLEPTFEQLSDEALK
                     DKTAEFKQRLADGVSLDSLLPEAFATVREASKRVLGMRPFDVQLIGGMVLTGRNIAEM
                     RTGEGKTLTATLSCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGLTVGVNIPG
                     LPSDAKRAAYQADITYSTNSELGFDYLRDNLAHDKNERFQRELHYALVDEVDSILIDE
                     ARTPLIISGPAEDATQIYQAVDQIIPHLIAQDKEDSEEYTGEGDFTLDLKNKQAHLTE
                     RGMVKVEDFLTQMGLMEEGESLYHPARISLLHHVSAALRAHKLFERNVDYIVKDGEIV
                     IIDEHTGRTMAGRRWSDGLHQAIEAKERVAIQGENQTVASITYQNYFRLYEKLAGMTG
                     TADTEAFEFQQIYGLNTVVIPTNRPVIRDDRTDLMFKSEAEKFAAIITEIRDCIERKQ
                     PVLVGTASVEKSELLSAELTKAGIAHNVLNAKFHAQEAEIVAEAGAPGAVTIATNMAG
                     RGTDIVLGGNWKMEVAKLENPTQEQIDAIKAAWQERYDIVMQAGGLHIIGTERHESRR
                     IDNQLRGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLNMMRKAFTEEGEAMESKLLT
                     KVIASAQAKVEAHNFDGRKHLLQYDDVANEQRKVIYEQRNHLLETDNIASMIESIRQD
                     VFESTINQYIPPQSIEEMWNVPGLEERLRREFGLDLPISHWLETEKDLHEETLRERIL
                     NIAIAEYNAKEEIVGAEVMRNFEKGVMLQNLDELWKEHLASMDYLRKGIHLRGYAQKD
                     PKQEYKKESFAMFTNMLDTLKLNVISILSRIQVRSKEEVEEAQRQQAEMDAASTPVTQ
                     ATDSAAGSREENSAESLSEEELANLNIGRNDPCPCGSGKKYKHCHGNKARYS"
     gene            14677..15075
                     /gene="mutT"
                     /locus_tag="PXE26_001331"
     CDS             14677..15075
                     /gene="mutT"
                     /locus_tag="PXE26_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HDL5593917.1"
                     /translation="MSKPIIQVSAGIIRNEFGQIYLTQRLEGQDFAQSLEFPGGKVDP
                     NETPEEALKRELEEEIGIQVLSAFPYENFCFEYPTKIIEFFFYLVEEWVNEPYGREGQ
                     EGFWIAQSDLDEGAFPPANAQLIKRLKEHA"
BASE COUNT         4536 a         2830 c         3063 g         4674 t
ORIGIN      
        1 attggtatta tatgttcaga gaagaagcta ttgaatatca atcgaaaaaa tggaaaagca
       61 cagctgtact atttagcaga gttccagctt tggttgtctt ttccatttct ttctttatct
      121 ttactgcctt tattctattt attgtgtttg gtaattatac ccgccgtgaa acggttgtgg
      181 gtgaattagt gatgcaatct catccgattt tattatctgc cccaaaatcc ggctatatat
      241 ccgaaaatta tattcaacca catcagcagg taaaaaaaag ggcgatccgc tggttaaaat
      301 tacgctggat agaattacgc atagcgaaaa tattaatgtt aattctattc tttcgttgaa
      361 atcacaaatt caagcaacag aacaagcgat aactgcttta tataagaata aatcagaaac
      421 tattaatagc cttgaaaagc agatcaaaaa cagtcaaaaa atttatcaag ataagcagag
      481 ttatttagtg gaaattgaaa aaagtatgaa tgactatgcg gagttggtta aacgctatga
      541 gaaattatta aaagtagggc attccagcca cgatgaagtg aatattcaga aaagccgtta
      601 tttccaacaa aaatcactgt ttaatgagct aaagcaagaa ttaattcaat taaaatccac
      661 ccaacttagc ttggaaaatg aaattgaaac ccgtaaaacc gaatttaata atcagattat
      721 tcgctatgaa atgcaaaaaa gcgatttaaa cattcgttta atggaatttg aatctgtttc
      781 agatattatt gttaatgcct ctttagatgg aaaaattgaa agtaccagcg taacagttgg
      841 gcaaattatt aaagaaaatg acccgcttgc acaaattctg ccacagaata aaggaaatta
      901 tcagctagtg atgtgggtac cgaatagtgc catttcattt attaaacaag gcgatgaggt
      961 gaatattcgc tatgaggctt ttccgtttga aaaattcggg cagtttaagg gcaaaattac
     1021 gtcaatttca accttaccag cttctttgca agaacttagt ttttataaaa atctccctgt
     1081 aaatttagag caaggtattc cgctttataa aattctgatt gagcttgccg atcaaaacgt
     1141 aaaatataat gatacctccc tttattttat gagtggaatg aaagccgaag ccacgttatt
     1201 tttagaaaaa cgtaaactgt atgagtggat atttttccct atgtatcaat tacgcaaaaa
     1261 tatggagcaa taatgacagg aattaagcag ttaaaatttg attttcggag aagaatacct
     1321 gttattttgc aaactgaaac agctgaatgt ggcttagcct gtttagcgat gatgttgggc
     1381 tattacgata aaaacaccaa tttatttgaa ttgcgaagtc aatatggtac ttcctctcgt
     1441 ggcgtaacgc tgcatacttt aatttctatt gcaaatgact gtggtttaat aactcgccct
     1501 ctttctctag agttagatga agtaccacaa cttcgtctgc cttgtattct tcattgggat
     1561 tttaatcatt ttgtagtatt aactcacgca agtgaaaaac agtttattat ccacgatcct
     1621 gctttcggta aacgtaaatt atcccgtgct gaattttcca accattttac cggagtcgct
     1681 ttagaagttt ggtctgaagt taaatttgag aaaagcaaca atgaaaatac cattagtttg
     1741 tatgaaacct taaagcatat ttctggcata aaaggtgcat tagtgaaaat ttttgccctt
     1801 tcaatgctca ttgaactcat tgccttattg atgccaattg gaacacagtt agtgatggat
     1861 cacgttatgc aagcgaaaga tcaatcatta cttttaatta tctgtattgg gctattttta
     1921 tttacccttt ttcgcacaat ggtcagtatg tttagggctt gggtttcctt gaaaatgaat
     1981 tatttaattg attttcaatg gacagccagt ttcttttctc atctcttaaa attaccgctt
     2041 gatttctttg aaaacgccaa gtaggtgata ttcattcccg atttagttca ttaaaaacca
     2101 ttcagaaaac tctaacttca agcattatta ccacgattat tgatacgatt atgataatca
     2161 gtttaattat tatgatggtg ttatatggcg gttggctctt ttgggtagta ttagcttttt
     2221 cctttatcta ttttattctt cgaatggtta cttatttagt ttatcgtcaa ctgaatgaag
     2281 agcagattat taaaggagca aaagcccatt cgcattttat ggaaacttta tatggtatta
     2341 caacgttaaa atcattagga ttggaaaata aacgacaaga acagtggatg tcgctcaatg
     2401 cggatgcttt taacacatca attaaggtaa ctaaatttga tatgctgttt tccggtattc
     2461 atacctttat ttctaccatc gaacagattt taattctttg gattggggcg acaatgatga
     2521 ttgaaaatgt gatgacatta ggaatgtttg tcgcttttaa tgcctatcga ggctctttct
     2581 cttcacgaat ggggaattta attgatatta tttttagcct aaaaattctt tcattacata
     2641 gagagcggat tgcagacatt gctttaaatg aagtcgaaga tgaaagtaaa tatcaagaac
     2701 tcagatttga acataaccaa acagatatag aagttaaaga cctttgtttc aaatacgatc
     2761 ctttttctaa aaatgtgctt gaaaatgtca atttagtgat cagaagtggg gaaagtgttg
     2821 ctattaccgc accatcaggt tatggcaaaa caacgttatt aaaattaatt gcaggtttat
     2881 taaaaccaac ctcaggttct gtgtatttta acggcattga tatttatcag ttaggattaa
     2941 gtcaatatcg gagccaaatt gcttgcgtat tacaggaaga taaattcttt tctggttcca
     3001 ttttagagaa tattgttagt tttgaaagta attatgatcg agaatgggct atcgaatgta
     3061 gcaaacttgc gaatattcac aatgatatta tggcaatgcc gatgaattat gaaaccttat
     3121 taggagaatt aggaaataat ttgtctggcg gacaaagata acgattgttt attgctcgag
     3181 ctttatataa aaagcctaaa attcttttga tggatgaggc gactagccat ttagatgaag
     3241 aaaatgagaa gcttgtcaat caagctattt cacgaatgaa gataacaagg attattattg
     3301 ctcatagaca atcgactatt cagtcggcgg atagaattat tgccctgaat gacaggtaaa
     3361 ttaattccta tttttctgtt cttgccgata aagtttattg cacggaatgc tgtcgttgtt
     3421 gccgtctagc tctttccagc cgcattgttg aaagtagcgt tttgcctgtg cgtaattgcc
     3481 gatttggttg cagcttaatt taatttggca atcaatcgtt ggtggctggt ttgcaatatt
     3541 ttccggtttt ttgaccgctt gtggtaaggt tgaggtgtgt gtttttcgcc attggctcgg
     3601 gttaatcggg aatttgtcct gccataagcc gattttagct tgctgtgctt gatcttgtgc
     3661 ttcgatatat tcccgctttg tggtgtaagc ccacgccata ccgttttcca ctaaggctaa
     3721 gttgatgttt ttatcgttta agtagagggt ggcaagtaat cgttggtaac gatcatagcc
     3781 tgaaactatg gcagtaatgt tttgttgaaa cacgaattga gccagagctt gtttggcttt
     3841 gttgccgtaa ggctgcgctt gttcgggggc atcaatatgt tgtagcctta tttttagtgg
     3901 tgttttattg accaaacaag tgagggtgtc gccatcgcta atgccaacga ctttgcattg
     3961 tagttggcgt tcggcggcat ataccgatga gaaaaataag ctaaaaatca gggcgtaaag
     4021 atatttcatt attaaaaaag agagggctaa taagccctca ttctatcatt ttttattcgg
     4081 ctttacctgt tttaaggcga gcgaagaaat cttttgtttc actaataatc actttgcgta
     4141 acgcaatcaa tgcgattaaa ttcgggaatg ccattaagcc gttcacgatg tctgccagcg
     4201 tccaaattgt atcgagttgt aaaaatggag cagaggcgat gagtgcaata aacagcaagc
     4261 ggtataattt aatgtattgg gtgcgacctc gagtgagata gacaaaacag cgttcaccgt
     4321 agtagcacca gcctaaaatg gtggtaaagg caaagaagac taaaccaact gtcacaatta
     4381 tcgcaccgaa tgagctgttt aaaccttgag taaaagcggt tgtggtgagt tctgcgcctt
     4441 ttacatcgcc tgcccaagcc cctgaaatca caattactaa gccggtcatt gtgcagacga
     4501 taatagtgtc taagaacgtg ccggtcattg aaattaggcc ttgacgtacc ggctctttgg
     4561 tttgggcggc agcggcggcg atgggggcag agcctaatcc tgattcattc gagaaaatac
     4621 cacgtgcaac ccctaattga atcgcttgca tgacggtgaa tccgactgct ccgcctaatg
     4681 ccgcttgtgg gttgaaagct gcgtgtacaa tagtaataat tgcttgtggg actttttcca
     4741 tattcagtag aatgacggat aaagcggcga tgacataccc aatagccata aacggtacaa
     4801 caatggttgc aattttagaa atccgctgca cgccacctaa aataatagcg gtaacgataa
     4861 gggttaaaat gatcgcactg aagataatcg gcacatcaaa ggtgctttct aaggcgtggg
     4921 taatgccatt cacttggggg aacgtgccaa taccaagcaa agcgaccaat acgccaaaaa
     4981 acgcaaaggc tttagcaagc caacgccatt tttttcccat tcccagttcg atatagtaca
     5041 tcggaccacc agccacaaat ccggctctat ctttagttcg atatttaatt gccaataagc
     5101 cttcggcata tttcgtagcc ataccgaata aggcaatcag ccacatccaa aataatgctc
     5161 caggcccgcc cgaatgaata gcggttgcca cgccgacaat attccccgtg ccgatagtag
     5221 ctgctagggc agtggaaagg gctgcaaaag cggaaatatc gcccgattgc cctttgcctt
     5281 tttccggttt gaacatatag cgaaaggctt gccctagttg gcttaattga atacctttga
     5341 gtgaaaaggt taaatataac cctacgcctg aaattaaaat caggagtggc gggccccaaa
     5401 caaaactgtt gatttgatta agaatagtgt cgatagacat ttgatgttcc tcgtaaaaac
     5461 tgcttacaag gaaagaaaag gaatgcaaga gacaagcggt caaaaaacgg aaattttttg
     5521 caaagaatta gcaaaaaaac accgcttgta tcgtataact tttctcccct gtccttttgc
     5581 ctgagcgttt cacacattgc tgtattttcg ccttcggcgg cggattttaa tccgctctct
     5641 ccaagggttc gtccagtaac agtccccgca gtgttcactg cacctgaaag agtttacctc
     5701 gtcggtgaaa tgttaattca tttctctcca gctaccttca tccgaacaat ctaatttatt
     5761 ttataatgta aaataaaaaa gatttgccaa attctagcaa ctcttttgct tccgtcaagt
     5821 gaatttaacg atatttttgt tctttcggta cttcttctaa atcgctaaat aatacggcat
     5881 atttttgggt ggctttattg gattctaatg ccactttaca cgccatcgta agtggaacag
     5941 aaagtaacat tcctacggtg ccaagtaacc acccccaaaa tagaagtgag aggaacacta
     6001 caagggtaga aagcccgagt ttcttgccca ttaatttagg ttcaagcgca ttacccacaa
     6061 ccatattaat cacgacaatg ccgattaaag tgcctaatcc tatagaaaag ccattgagta
     6121 ccaaggcttg aatcacaatt ggaattcccg ccaaaataga gccgatattc gggacgtagt
     6181 taagcaggaa ggttagaatt gcccataaaa tcgcatattc tacgcctaga atttctagta
     6241 agatccaaac taaccctccg gtgagtaggc tcacaaaggt tttaactcca aggtaaccaa
     6301 tcaccccttc aagtacttgg ttgatatact ctttttcgtt gcttaaatca tcatctgggc
     6361 taagtgcgag ggctaattta tatttggcaa ccggcatttc caatagcata aaaatgacga
     6421 ctaagaaaat cacaaaaata ttcgataatg caccggatag ccccattagc agtttgctga
     6481 ccaaattcat tattgagctt gggtcaaatt tgctcataat ctcttcttgt gagagggtaa
     6541 gtggaatatg ccatctatgg gcgagttcta gaatcacctg gattctagat gaaagctgaa
     6601 ttttgtattg cggaatagca ttagtaaatt cttgcaaggt gttattaata atgcctgcta
     6661 agaaactgaa tcctaagata aaaacaataa gtaaaatggt aatggctaac cataatggca
     6721 ctttacgctt agtcataaat ttgatcattg gtgaacaaat aatggcaata aatagcgaaa
     6781 gtaaaaatgg cacaacaatt tcattggata atttaatccc tgccagaata atgataatgg
     6841 aggctatcgc cacgagagtt ttggtggaat gtgtcataat ttttcctttt acaagcggtt
     6901 aaaaatcagc aattttttac aaattagtga ttctcaaacc aactttctaa aattaaacaa
     6961 gcggaaatgg aatccacttt atcctttttt aatgctttgt aaccaccacg agaaaaaatt
     7021 tccgcttttg cttcaacagt agtgaggcgt tcatcttgta gctcaaccgg cagattaaag
     7081 cgtccgttta agcgattggc aaattttctg gcacgctgag ttaaaggctg ctctgtgccg
     7141 tccatattca agggtagccc aacaaccagc atatctggtt tccaatcttg caagagtttt
     7201 ccgatctctt cccagtttgg aataccgtct tgggctttaa atgtagttaa accttgagct
     7261 gtgccggtaa tactttgtcc aactgcacag ccgatgctat ttgtgccaaa atcaaaggca
     7321 atcacggttt ttgttgtggt ttctgtcatt aagctctccc agctcttgac ggtatgcttg
     7381 aaagccccat catttcatag gcttctgccc aacgctctaa ataaccggtt tcaaacagcg
     7441 ttttttcatt cgcatcagac acaatccaat aattttgagc aatttcttgc tcaagctggc
     7501 tgccacgcca agtggaacaa cctaaacaca caataaattt ttcaggtgaa gccagtgtgc
     7561 caaaggagtc taacacatca ccggaggtag tgagcgtaat tttatcggtg atcggataag
     7621 tgtgaataaa atcattggcg gttttggtgt gaataataaa gccacgatct tgatttaccg
     7681 gcccaccgct taacaccatt tggtcttttt tgtaatcacg ctggttcgcc atttggaaat
     7741 ccattcgggt aatcagctct agaaccgaca gatcggtagg agtgttaatt actactccca
     7801 ttgcaccttg cggattatgt tcgcaaatat agaccaccgt acgctcgaaa tagtcatcgt
     7861 ccatttccgg cgtggcaatt aaaaatttac cttgtaaatt ctctaacatt aaatatctcc
     7921 aaaacaaact tgtaacgcag taattgccgc aagtgaggcg gtttctgtgc gtaacactcg
     7981 tttacccagt aatacttcag taaaaccttc gctctcggtc atggcgattt cttcggcaga
     8041 taatccgccc tcagagccaa tcagtaaacg aacaccagct ttcggcacat tcggcagttc
     8101 acgaatggta tatttggctc ttgggtgcaa attcagtttc aacatatcgt cttgttcttt
     8161 gcaccagtcg gtgagtttca taatcgggcg aatttcaggg atttcatttc gtccgcattg
     8221 ttcacaggcg gcaatcgcaa ttttctgcca ttgctgtaat tttttatctt gccgttcatc
     8281 attgagtttc acgccacaac gttccgacca aagtggggta atagttttta cccccagctc
     8341 caccgatttt tgaatggtaa attccattct atcgcctcgg gaaatcactt gccctaaatg
     8401 gatcggcagg ttggattctc ggtcatctaa ttcacttgaa tcaatttttg caataatttg
     8461 ctttttttcg accgcttgta acgtagcgtg gaaaacgtgg tttgaaccat caaataaaat
     8521 gatttgctct ccttgtttca ttcgtagcac tcgcccaacg tggttagcgg catcttcact
     8581 taacacgcaa ctttgaagac cagctaacgg ctgtggttgg taaattcttg ggattctcat
     8641 aattatctag ttataaatta aaggcagacg attgtctgcc ataggtaagt taaaacgggt
     8701 taaggataaa gtcttgaaca atgcacaata gtaataatcg aaatttcatt ctctttaact
     8761 tcacacacta ttctatagcc gttatgatat agttctctcg tattaataat tgcacctttt
     8821 acacccattg taggaaaaat ggctaaatta ttaatactat tttccaattc ttctagtatc
     8881 ctaattccac tacttgcata accggtaaat tcactaactg agatggcaat attctctaaa
     8941 tctattaagg cctcttcagt ataataaata ttatgcaact tttttggcat tttcagcacc
     9001 tctaaaagcg gcagcaataa ctctttttct gacctcttcg ggtgaataaa tccgaccgtt
     9061 tttaatatct tcctttcctt gctttacttt tttagcaaga taatcaagat attcttggct
     9121 aacattatga taaggattat tcatattttt cctccctgcg atgagtctct attgtggggg
     9181 ctactgatcg tttaatcaag ttaatttatc ttatttttcg agccacatca caaaacgaga
     9241 aaacaacaag cggtcatttt tccacgtttt ttgcaaaaaa tcgaagaaag atgaccgctt
     9301 gccagaaaaa attaattatt tgaactggtg aattgcattg gcgatttcat tatcgttgta
     9361 aatagctttc accacatcag aataggcttg gtctaacact ttcttgattt catcattgct
     9421 tgcaccaaat gcaccttcgt aaccacgggt agcgttgaag tttttgctaa agtttccttt
     9481 agaaccttgc actgccactt ttacactcac ttgtgcatcg gctttgtagc gtaagtttcc
     9541 ttgttctact gtggcaaaga atttacgaat attcactacc acattggcat tcgctgcacc
     9601 ttgtacaatt tggaaacctt ttgcattcag gtcttgttgg acggcttgtt ggaacattgc
     9661 agcaacttca ggcactgcgg ttaaacgaat gacctctccg tttttagtgt agcttgcgat
     9721 ttcacgcgag gtgcgtaaat cttgtgtcat tacattcacc gcagccgttt gattgtttgt
     9781 gttaaataca gcagttggcg ttggggtaga gaatgttaat gtgttggatt ggctttggca
     9841 gccggctagt aatgcggcaa caaaagtagt ggctaacact aacgtttttt tagagcgttt
     9901 catagtaaat ccttctatat tgaataaatt tcgagaaaat ttctgcttag tatagtatta
     9961 tttcgttttg attttcaatg aacgagagca aaaaatgtcg gtagaacaga caattattca
    10021 aaaaattaag acagaatttc agccgatttt ctttaatgtc gaaaacgaaa gctatatgca
    10081 cagctcaggt agaggagcag aatcgcattt taaattaact ttggtgtcag ataaatttga
    10141 agggcagaga acagttgcac gtcatcgtgc tgtctatgct tgcttagctg aggaattagc
    10201 taatggcgtt cacgcacttg ctttgcacct atatacccaa ggtgaatggg aagcgactgg
    10261 cggacttgta cctaaatcgc taaattgctt aggtgttggg caataagtgg ataaaaatga
    10321 tttattttat tttgtgaaga aaatacttga aagagccgtg taaaattgct atatttacgc
    10381 catctttttg ttgattcggt gagatgtccg agtggttgaa ggagcacgcc tggaaagcgt
    10441 gtatatggga aactgtatcg ggggttcgaa tccccctctc accgccattc atactgaaag
    10501 attccttact gttttcatag atatttcctt ggttaagtta aagtagataa tactttttca
    10561 tttttaggtt atccccgagc aaacattgct tgggggtttt tttatgcgat cggcgataga
    10621 ttacaaagaa aaaggattcc taagaatcct ttttatctgc ttttaacgta ctttacctag
    10681 tttatagtta ttgctgtttt ttaccgtgtt gccatttggg tcgcaaagtt caacgtgttg
    10741 ttcagacact tggaaggcaa gattgcctga tgctttttcc agacgaatca catttggctt
    10801 attgggttcc caactgtatg tgcctttgtc tcggtaagtg tattcttttt tatctttaaa
    10861 atataccgta tcatattggt aggttttatc tgcatttaag gttagctggg cttggatttt
    10921 ctcacagtca gcacacggta attcacctgc ataagtaccg ctaacgcttt tttgtggtag
    10981 caatgagcaa gcccctagca ttgcggtggt aaaaccaatg agtgcgattt ttttcatact
    11041 attttcctct tcaaaattaa attatgtaac actcggattt actctaaatt caagttgggt
    11101 tatttcaggt aaatcggttt gtatctgttt tagtaacata ttttgttgca agattaaacc
    11161 ttgccgtacg gttgcattct taacgctcac aataagctga ttatcaacta aattcactac
    11221 tcggtaaagc ccacgataag attctggcca tcttttctga attttttggt ttaaatcgtt
    11281 aatgaagttt gctttttcga caatacggct taagcttgag ttctgtaaaa tgtcattaat
    11341 ctttttaggt gctgaatttt tcatctgttt ctttacattt cgtcttattt taggcttgat
    11401 tttacgatac ttgacccaat aatttactca ttcggcttta ctttagcgta taattagccc
    11461 aattttttca tttatcttaa tttaatgagc ttatttttaa aacactttca tcgaacgcct
    11521 ttttggtcgc aactcttttt gggaatggtt gcgatacttg ctttacctga aattcaggtt
    11581 gcgtacgcca atgaaagtga acaggaaacc gttcttaatc aatcttttct tcaatatgct
    11641 caatccgcta atgatattga gcaacaatcg ctttttattg cagagttaat ccataaaatt
    11701 gtggaaatta aaccacaagc ggtgcatttt tgcgaatttt ttgcaaactc ctaccgcttg
    11761 gatagacaaa atgcttaccc cattcgagcc gggccacaaa cctaaatata atttaatttt
    11821 accattaatt gattaaccca tttttatatt taggaataac acaatgattt caaaattact
    11881 gacttctatt tttggctcaa gcaacgatcg cactttaaaa cgtttaagaa agcgagtggc
    11941 acaaattaat aagcttgaac caaccttcga gcaattatct gatgaggcgt taaaggataa
    12001 aacagcggag tttaagcaac gccttgcaga tggtgtatcg ctagatagcc tattacctga
    12061 agcttttgcg acagtgagag aagcaagcaa acgagtatta ggtatgcgac catttgatgt
    12121 acagctgatc ggcggtatgg tgctaacggg gcgtaatatt gcagaaatgc gtactgggga
    12181 aggtaaaacc ctaactgcaa ctttatcttg ttatttgaat gctttgaccg gtaaaggtgt
    12241 tcatgttgtt acggtgaatg attacctcgc ccgccgtgat gcggaaacca accgtccgtt
    12301 atttgagttt ttaggcttaa ccgttggagt gaatattccg gggttacctt ccgatgcaaa
    12361 acgtgctgca taccaagcag atattaccta ttcgactaac agcgaattag gttttgatta
    12421 cttgcgtgat aacttagctc acgataaaaa cgaacgtttc caacgtgagt tacactacgc
    12481 attagttgat gaagtagact ctattttaat tgatgaagct cgtacgccgt taattatttc
    12541 agggcctgcg gaagatgcga cccaaattta tcaagcggta gatcaaatca ttccgcattt
    12601 gattgctcaa gataaagaag acagtgaaga gtacaccggt gagggcgatt ttaccttaga
    12661 tctgaaaaac aaacaggctc atttaaccga gcgtggtatg gtgaaagtag aggatttctt
    12721 aactcaaatg gggttaatgg aagagggcga aagtttatat caccctgctc gtatttcgct
    12781 gttacaccat gtgagtgcag cattgcgtgc ccataaatta tttgaacgca acgtagatta
    12841 cattgtaaaa gacggtgaaa ttgtgattat tgatgagcac accggtcgta caatggctgg
    12901 acgtcgttgg tctgacggct tacaccaagc gattgaagct aaagagcgtg tggctattca
    12961 gggcgaaaac caaactgttg cctcaattac ttaccaaaac tatttccgtt tgtacgaaaa
    13021 attagccggt atgactggta cggcagacac cgaagccttt gaattccagc aaatttatgg
    13081 cttaaatacg gtggtgattc caaccaacag accggtgatc cgtgatgacc gtacagactt
    13141 aatgtttaaa agcgaagcgg agaaatttgc ggcgattatt actgaaatta gagactgtat
    13201 cgagcgtaaa cagcctgttt tggttggcac agcatcggtg gaaaaatcag agttattatc
    13261 ggcagaatta accaaagccg gtattgctca taacgtatta aatgcgaaat tccacgctca
    13321 agaggctgaa attgtagcgg aagcgggagc tccgggggcg gttactatcg caaccaatat
    13381 ggctggtcgt ggtacggata ttgtgcttgg cggtaactgg aaaatggaag tagccaagct
    13441 tgagaacccg acacaagaac aaattgatgc gattaaagct gcgtggcaag agcgttatga
    13501 catcgtaatg caagccggtg gtttacatat tattggtaca gaacgccacg aatcccgccg
    13561 tatcgacaac cagttgcgag gtcgttctgg tcgtcaaggt gacccggggt catcacgttt
    13621 ctatctctct ttagatgatg ccctaatgag aatttacctc aatgaaggta aattaaatat
    13681 gatgcgtaaa gcctttaccg aagaaggtga agcgatggag tctaaactgt taaccaaagt
    13741 gattgcctct gcacaggcga aagtagaagc gcataacttt gatgggcgta agcatttatt
    13801 acaatatgat gatgttgcca atgaacagcg taaagtaatt tacgaacaac gcaatcatct
    13861 attagaaaca gataatattg cctcaatgat cgaaagcatt cgccaagatg tatttgaaag
    13921 cacgattaac caatatattc cgcctcaatc tatcgaggaa atgtggaatg tgccgggctt
    13981 agaagagcgt ttacgccgtg aatttgggtt ggatttaccg atttctcact ggcttgaaac
    14041 tgaaaaagac ttgcacgaag agactttgcg tgaacgtatc ttaaatattg cgattgcaga
    14101 gtacaatgcg aaggaagaaa tagtaggcgc agaggtaatg cgtaattttg aaaaaggtgt
    14161 aatgctacaa aacttagatg agctttggaa agagcatcta gcctcaatgg attatttacg
    14221 caaaggtatt cacttgcgtg gttatgcaca aaaagatccg aagcaagagt ataaaaagga
    14281 atcttttgcg atgtttacca atatgcttga taccttaaaa ttgaatgtaa ttagcatttt
    14341 aagccgtatt caagtgcgta gcaaagaaga ggtggaagaa gcgcaacgcc agcaagctga
    14401 aatggacgct gcaagtacgc cagttacaca agctaccgat tctgctgctg gtagtagaga
    14461 agaaaatagc gcagagagct taagtgaaga agagttggca aacttaaata ttggtcgaaa
    14521 tgacccttgc ccttgtggtt cgggcaaaaa atataagcat tgccatggta acaaagcgag
    14581 atattcgtaa ttaacaagcg gtcatattca gtcaggaatt tgcaaatttt ctgcttaata
    14641 tgaccgcttg aatttataga aagagtgaag gaaactatgt caaaaccgat tattcaagtc
    14701 tcagcaggga ttattcgtaa cgaatttggg caaatttact taacccaacg tttagaaggg
    14761 caagattttg ctcagtctct tgaatttccc ggggggaaag tcgatcccaa tgaaacccct
    14821 gaagaagcac taaaacgaga attagaagaa gaaattggta ttcaagtgtt aagcgctttt
    14881 ccgtatgaaa atttttgctt tgaatatcca acaaaaatca ttgaattttt cttttatttg
    14941 gtggaagagt gggtaaatga accttacgga agagaagggc aagaaggttt ttggatcgca
    15001 caatcggatt tagatgaggg agctttccca ccggcaaatg cccaattaat taaacgctta
    15061 aaagaacacg cataatttgt attgagaact gtatctaaag taa
//
LOCUS       DANLZD010000061        14757 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.061, whole genome shotgun sequence.
ACCESSION   DANLZD010000061 DANLZD010000000
VERSION     DANLZD010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14757)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14757)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14757
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.061"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..471)
                     /gene="sixA"
                     /locus_tag="PXE26_001332"
     CDS             complement(<1..471)
                     /gene="sixA"
                     /locus_tag="PXE26_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HDL5593918.1"
                     /translation="MNIWIMRHGEAGFNASSDAARCLTDNGIKNTISQGKWLGEHLAN
                     QQIQLDKILVSPYLRAQQTLENVLIGMQAVNFPQHFTNLIESWDEVTPDGNPHTVESY
                     LHFLREEGAKNILLISHLPLVFDLVQILTNNQSNVQFPTSTIAEINWVKTKAELI"
     gene            598..2037
                     /gene="pyk"
                     /locus_tag="PXE26_001333"
     CDS             598..2037
                     /gene="pyk"
                     /locus_tag="PXE26_001333"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDL5593919.1"
                     /translation="MSRKLRRTKIVCTMGPATDRGNTLEKIIAAGANMVRMNFSHGIP
                     EDHIERANKVREIAARLGRHVAILGDLQGPKIRVSTFKDGKIFLNIGDKFTLDADLPR
                     GEGHQEAVGLDYKNLPNDVVPGDILLLDDGNVQLKVLEVEGVKVHTEVTVGGPLSNNK
                     GINKLGGGLSAPALTDKDKEDIKLAAKIGVDYLAVSFPQSSADLHYARELAKEAGLEA
                     KIVAKVERAETVATEEAMDDIILGADVVMVARGDLGVEIGDAALVGVQKRLIRRARKL
                     NRVVITATQMMESMIKKPMPTRAEVMDVANAVLDGTDAVMLSGETANGDYPVETVKSM
                     AEVCLGAETMPSINISRHRMEGTFKSIEEAVAMSAMYTANHLEGVSAIISLTHSGETA
                     KLTSRISSGLPIYAMSRNQKALNLCALYRGVTPVYYNEDSRTMEGAKKAIAQLKEQGY
                     LLTGELVLLTHGDELKAGGTNTCRILRVE"
     gene            2133..3170
                     /locus_tag="PXE26_001334"
     CDS             2133..3170
                     /locus_tag="PXE26_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5593920.1"
                     /translation="MHNKLLSICILRLSAIGDVCHTLAVIQAIQRKYPSAEITWIIGK
                     TEAYLMKDIPNVHLIPYDKKIGWKGIFTLWQKLSHKRFDFLLNLQTAFRASILSLGIK
                     AKKKIGFNQDRAREMQWLFTNQKVEMTDSPHVLDGQMMFAKAIGIMDLSAQWNLPVSD
                     EDLAYGKQFIDFTRKNILIAPCSSKKEKDWLPERYAEIANWLSKQNINVLIAGSPSQY
                     EMETAAKIQQLAPNCTSIAGKTTLKQLAGVIRQVDLVISSDSGPAHIATTQNTPVIGL
                     YAIHNPRRTGPYNDLDKVVSVYDEAILQSYGKPWQQLAWATKAKGKNWMEKITVESVK
                     QKVVETLKITL"
     gene            3210..4268
                     /locus_tag="PXE26_001335"
     CDS             3210..4268
                     /locus_tag="PXE26_001335"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HDL5593921.1"
                     /translation="MNTVFNQDSVHNVNIQDEKVLLTPQELKQEFPLPEHLRNQIERS
                     RKTISDIIHRRDKRQLIVIGPCSIHDPVAALEYGKKLKALSEQVSDKLYIVMRVYFEK
                     PRTTVGWKGLINDPKMDGSFDVETGLRIARKLCLDLAELGLPLATEALDPMTPQYLAD
                     LFSWSAIGARTTESQTHRELASGLSMAVGFKNGTDGDLAVALNAMQSSAQSHSFIGIN
                     QQGQVTLLKTKGNADGHIILRGGKTPNYEKQYVDDCEWVLKQANLPTAIMIDCSHGNS
                     NKDYRRQPLVAENVLEQLLAGNTSIIGLMIESNLHAGNQSSELPFEQMKYGVSITDAC
                     IDWQTTEELLTHFAEKLR"
     gene            4323..5444
                     /gene="tyrA"
                     /locus_tag="PXE26_001336"
     CDS             4323..5444
                     /gene="tyrA"
                     /locus_tag="PXE26_001336"
                     /EC_number="1.3.1.12"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydrogenase"
                     /protein_id="HDL5593922.1"
                     /translation="MNPLAPLREQIDQVDQQLIALLSERLALVAEVGKVKSEHGIPVY
                     APERETAMISARRSEAEKQGIPADLIEDVLRRIMRESYANENKHGFKRVNSDIQKIVI
                     VGGKGKLGGLFGNYLTLSGYNVEALGRDDWDNAEQILANADVVIVCVPIANTLATIER
                     LQSYLTENMILADLTSVKHQPLQKMLEVHNGAVVGLHPMFGPDIASQAKQVVACCHGR
                     FPERYQWLLEQIKIWGAKIEEIEAAAHDNAMTYIQALRHFSTFAFGLHLSRQPVQLSQ
                     LLALSSPIYRLELAMIGRLFAQDGSLYADIIADKPENLATIETLKESFEQGLDFFKRN
                     DKAGFIKAFEEVHHWFGDYSEQFLKESRVLLQQAHDSRK"
     gene            complement(5635..6720)
                     /gene="recF"
                     /locus_tag="PXE26_001337"
     CDS             complement(5635..6720)
                     /gene="recF"
                     /locus_tag="PXE26_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HDL5593923.1"
                     /translation="MALTRLLINHFRNIQHTDLAFSPHFNFLVGANGSGKTSLLESIF
                     YLGHGRSFKSHISNRIIHYDKDDFVLHGKIDEAKHSWSVGIQKFRSGETTLKINGEDG
                     NKIADLAHLLPMQVITPEGLTLLNGGPSFRRAFLDWGLFHQHPDFYAHWNNLRRLLKQ
                     RNSALQQVRSYQELKAWDIELVKTTYAVSEMRAEYAEALRPEIEKTCQFFLPEIEIGL
                     SFHQGWEKGADYAEILAQGFERDKALGYTMIGAQKADFRFKANGLPVEDVLSRGQLKL
                     LMCALRLAQGEHLVAQKQRQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITQ
                     DQLNQMQWQDRSDDCLFTVKNGEIQPQ"
     gene            6860..7189
                     /locus_tag="PXE26_001338"
     CDS             6860..7189
                     /locus_tag="PXE26_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001364632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HDL5593924.1"
                     /translation="MFGKGGLGGLMKQAQQMQERMQKMQEEIAQLEVTGESGAGLVKV
                     TINGAHNCRRIEIDPSLMEDDKEMVEDLVAAAFNDAVRRAEEMQKEKMASVTAGMQLP
                     PGMKFPF"
     gene            7197..7802
                     /gene="recR"
                     /locus_tag="PXE26_001339"
     CDS             7197..7802
                     /gene="recR"
                     /locus_tag="PXE26_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HDL5593925.1"
                     /translation="MQTSPLLENLMEALRALPGVGPKSAQRMAYHLLQRNRSGGVALS
                     KALNEAMSHIGHCKSCRTFTEEEECTICKNPRRQMSGQLCVVEMPEDIQAIEQTGQFS
                     GRYFVLMGHLSPIDGIGPREIGLDLLQQRLEQESFHEVILATNPTIEGDATANYIAEM
                     CRMYNVKATRIAHGVPVGGSLEMVDGTTLSHSFAGRRDIDI"
     gene            7874..8200
                     /gene="grxD"
                     /locus_tag="PXE26_001340"
     CDS             7874..8200
                     /gene="grxD"
                     /locus_tag="PXE26_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005705415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HDL5593926.1"
                     /translation="METIDKIKQQISENPILLYMKGSPKFPSCGFSARAVEAVINCQV
                     PFGYVDILTNPDIRAELPKFANWPTFPQLWVEGELVGGCDIVLEMLQKGELQTLLKET
                     AAKHAA"
     gene            8342..9379
                     /locus_tag="PXE26_001341"
     CDS             8342..9379
                     /locus_tag="PXE26_001341"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HDL5593927.1"
                     /translation="MALKELDWANLGFSYIKTDYRFIAHWKDGKWNEGELTQDNTLHI
                     HEGSTALHYGQQCFEGLKAYRCKDGSINLFRPDQNAERMQRTADRLLMPRVPTELFIR
                     ACKKVVKANQDWLGPYGSGATLYLRPFLIGVGENIGVKAAPEFIFSVFCCPVGAYFKG
                     GLAPSNFITTDYDRAAPMGTGGVKVGGNYAASLLPHELAVEQSSTTRKFADAIYLDPK
                     THTKIEEVGAANFFGITKDNKFITPISESILPSITKYSLLHLAQERLGMEAIEGDVYI
                     DQLDQFAEAGACGTAAVITPVGGIQHKDKFHVFYSETEVGPVTRRLYAELTGIQFGDV
                     EAPQGWIVKVE"
     gene            9406..9954
                     /locus_tag="PXE26_001342"
     CDS             9406..9954
                     /locus_tag="PXE26_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HDL5593928.1"
                     /translation="MAKLFANSTACLYLENMKKLIFLGLSALALAGCSSTISNPNQLI
                     GQWQCTIEYDDFNIRTVDNLRFSTNGTMTNQGGIYYPIQKSIFEYSLQQNGRWSVKNG
                     AIVYRIVSESVQRSHRSQIWSELQRDAELQQFEENLFSSLSDSDNNKTVELIITDFDE
                     KEMDIKQEIKGHKAYKGQCIKQ"
     gene            9963..10307
                     /locus_tag="PXE26_001343"
     CDS             9963..10307
                     /locus_tag="PXE26_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDL5593929.1"
                     /translation="MIQRFEVGSRFSEMAIHNGVAYLAGQVPLDDTADAYTQTQQVLA
                     EIDKWLAKANSDKSKILMATVYLKEMADYAEMNRAWDEWVAPNNAPPRAAVEAKLANP
                     NWKVEIVVTAAV"
     gene            complement(10340..12118)
                     /locus_tag="PXE26_001344"
     CDS             complement(10340..12118)
                     /locus_tag="PXE26_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HDL5593930.1"
                     /translation="MSTLDFHFIHRFHQQVQALSHHPALRFMQDEKWSEISWLELQKQ
                     VNNLSYALLANGLAVQEKIAIFAQNMPRWTITDIAAMQIRAVAVPIYATSTTKQLEYI
                     LNDGDIKILFVGDQEQYDQAIEIANNCSLLIKIVAMKDSIDLRDFPIAQHWQDFIKVN
                     QDEAELTKRLNDKCLEDLFTLIYTSGTTGEPKGVMLDYANLAHQLQAHNKALPHIDEN
                     DISLSFLPLSHIFERAWVTYVLYRGAVNCYLEDPQQVRQALSTVRPTLMCAVPRFYEK
                     IYTAVWDKVQQAPIHRRALFKWAIRTAEDNLFGKKSAFFHRLQYIMADKLVLGKLRAL
                     LGGRIRMMPCGGAKLDPSIGLFFQSIGINVKLGYGMTETTATISCWQEKGFNINSTGT
                     LMPDVEVKISEENEILVRGGLVMKGYYKKPEATAQAFTAEGFLKTGDAGELDSEGNLY
                     ITDRIKELMKTSNGKYIAPQYIEGKIGKDKFIEQIAVIADAKKYVSALIVPCFDSLEE
                     YAKKLNIRYQDRLELIKHYEVVRMFEQRINELQKDLASFEQIKKFTLLSQAFSTKMEE
                     ITPTLKLRRKVILERYKQQIEKMYES"
     gene            complement(12344..12913)
                     /locus_tag="PXE26_001345"
     CDS             complement(12344..12913)
                     /locus_tag="PXE26_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005821628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P hydroxylase"
                     /protein_id="HDL5593931.1"
                     /translation="MNQENHKIEDIIRIFNQCFSDEYNTRLERGGNYPIYLPEFMDED
                     GVPSERPYNVILFAHGYYSSALHEIAHWLVAGEARRKLEDFGYWYEPDGRSAERQREF
                     ESAEIKPQAIEWVLATAAGFRYFASADNLSGNPGDNSAFKQAVYDQVKLYAERGYLPK
                     RAETLRKALCAFYGTPDVIDLAQFDIERI"
     gene            complement(12923..14686)
                     /locus_tag="PXE26_001346"
     CDS             complement(12923..14686)
                     /locus_tag="PXE26_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HDL5593932.1"
                     /translation="MIRYFFSLVLSLLMINSSHANLFSQPKFLKSEEAFVFSIQNENE
                     TLQLNWDIADNYYLYKKEIRVTPQNIEIGDITFPAAEQYNDEFFGQVEIYRNHLGLKV
                     PFKEIKDNASIVVEYQGCTKGFCYPPERVELKLDSILSATPEELAQLEAQAVEKSENF
                     AKTDNMAPPENVAKAEQDQLAENLANNRFSIFWFFVLGVGLAFTPCVLPMLPLLSAIV
                     IGNKQRPSTAKALLLSIAYVQGMAVTYTLLGLIVAAIGLPFQIALQSPPVLIGLSIVF
                     ILLACSMFGLYEIQLPNSWQQKLNAMSQKQQGGALGSVFLMGMIAGLIASPCTSAPLS
                     GALLYVAQSGDLVTGGLALYLLALGMGLPLILITLFGNKILPKSGEWLLKVKAAFGFV
                     MLALPVFLLSRVLPSHYEPFLWSALAVAFLIWLVDAIPSNSITKKIIKVLLLLALAIA
                     AKPWADLAWNGSTTQQQTTPHLALEKIQSLADLETKLTASKGKKVMLDLYADWCVACK
                     EFEKYTFSDQNVQNKLNEMVVLQIDMTKNSAENIELMKHFNVLGLPTILFFDENGNEM
                     SQSRVTGFLDAEQFLAWLNKL"
BASE COUNT         4440 a         2848 c         3195 g         4274 t
ORIGIN      
        1 aattagctca gcttttgtct ttacccaatt aatttctgct atggttgaag ttggaaattg
       61 tacattgctt tggttattcg ttaaaatttg gacgagatcg aacacaagtg ggagatgtga
      121 aatcagaaga atattttttg cgccttcctc tcttaaaaaa tgtagatagc tttctactgt
      181 atgcgggttt ccgtcaggcg taacctcgtc ccaactttca atgaggttgg taaaatgttg
      241 gggaaaattg accgcttgca taccaataag cacattttca agcgtttgtt gcgccctaag
      301 gtatgggctg acgagaattt tatctaattg aatttgttgg ttggctaaat gttctcctaa
      361 ccattttccc tgtgaaatgg tgttttttat accattgtcg gttaaacagc gagcagcatc
      421 actcgaagca ttaaagcctg cttccccatg gcgcataatc caaatattca taacattctc
      481 ctttagttgt atttaaactc tcttgattta ggcgtataat gaccctcgtt taacgcataa
      541 tcaagatgct tagaaagatt ttaacttaat ttttaaattt attgatggag tcaaataatg
      601 tctagaaaac tcagaagaac gaagatcgtt tgtacaatgg gacctgcaac agatcgtggc
      661 aatacgttgg aaaaaatcat tgctgccggt gcaaatatgg ttcgtatgaa tttctctcac
      721 ggtattcctg aagatcacat cgaacgtgcg aataaagtgc gtgaaattgc tgcaagatta
      781 ggtcgccacg ttgcgatttt aggcgatttg caaggtccta aaattcgtgt ttcgacattt
      841 aaagacggta aaattttctt aaatattggt gataaattca ccttagacgc agatttaccg
      901 cgtggagaag gccatcaaga agctgtaggt ttagattaca aaaacttacc aaatgatgta
      961 gtacctggtg atattctatt gttagatgac ggtaatgttc aactgaaagt gttggaagtg
     1021 gaaggcgtta aagttcatac tgaagtgaca gttggtggcc cgttatcaaa caataaaggg
     1081 attaacaaat taggtggtgg tttatcagct cctgcattaa ccgacaaaga taaagaagac
     1141 attaaattag cggcgaaaat cggtgtggat tacctagcgg tttcattccc tcaatcaagt
     1201 gcagatttac attatgcacg tgaattagca aaagaagcag gcttagaagc gaaaattgta
     1261 gcgaaggttg aacgtgccga aactgttgcg actgaagaag caatggacga catcatttta
     1321 ggtgcggacg ttgtgatggt tgctcgtggt gacttagggg ttgaaattgg tgatgcggct
     1381 ttagtgggtg tgcaaaaacg tttaatccgc cgtgctcgta agctaaatcg tgtggtaatt
     1441 accgcaaccc aaatgatgga atcgatgatt aaaaaaccaa tgccgacccg tgctgaagtg
     1501 atggatgttg caaatgctgt gttagatggt actgatgcgg taatgctttc cggcgaaact
     1561 gcaaacggtg actaccctgt tgaaacggta aaatcaatgg cagaagtgtg cttaggtgct
     1621 gaaacaatgc caagcattaa catttctcgc caccgtatgg aaggtacgtt taaatctatc
     1681 gaagaagctg tggcaatgtc tgcaatgtac accgcaaacc atttagaagg tgtatcggca
     1741 attatttcat taactcattc aggcgaaacg gctaaattaa ccagccgtat cagctcaggt
     1801 ttaccgattt atgcgatgtc tcgtaaccaa aaagcattaa acctttgtgc gttatatcgt
     1861 ggtgtaacac cggtatatta caatgaagac agccgcacaa tggaaggggc gaaaaaagcc
     1921 attgctcaat taaaagaaca aggctattta ttaaccggcg aattagtgct tttaactcac
     1981 ggagatgaat taaaagctgg cggtacaaat acttgtcgta tcttaagagt tgaataatct
     2041 aaacgattaa cgcaaaagcc acataaaaca ctttatgtgg ctttttttct gtcttaatat
     2101 agcttaatgt aatctgaact attgatatta ttatgcacaa taaacttctt tctatctgta
     2161 ttctccgcct ttctgccatt ggcgacgttt gccatacctt agcggttatt caagctattc
     2221 aacgaaaata tcctagtgct gaaattactt ggattatcgg caaaacggaa gcgtatttaa
     2281 tgaaagatat tccgaatgtt cacttaattc cttatgataa aaaaataggg tggaaaggta
     2341 tctttacact ttggcaaaaa ctttctcaca agcggtttga ttttttatta aatttacaaa
     2401 cggcattccg agcttcaatt ctatcgcttg ggattaaagc aaagaaaaaa atcggcttta
     2461 atcaagacag agcaagggaa atgcaatggt tgtttaccaa ccagaaagta gaaatgacag
     2521 actctcctca cgtgcttgac gggcaaatga tgtttgccaa agccattggg ataatggatt
     2581 tatcggcaca atggaattta cctgtgagtg atgaagattt agcttatggc aaacaattta
     2641 ttgattttac aaggaaaaat atactcattg ctccttgttc aagcaagaaa gagaaagatt
     2701 ggttgccgga acgctatgca gaaattgcta actggctaag taagcaaaat atcaatgtat
     2761 taattgcagg ttctccatcg caatatgaaa tggaaaccgc agccaaaatt caacaacttg
     2821 ccccgaattg tacgagtatt gccggtaaaa ccacgctaaa acagcttgca ggtgttattc
     2881 gtcaggttga tttggtgatc tcttcagatt caggtcctgc ccatatcgcc actacgcaaa
     2941 atacgccggt gattgggttg tatgcgattc ataatccaag acggacaggc ccttacaatg
     3001 acttagacaa agtggtttcg gtatatgatg aagcgatttt gcaatcttat ggtaaacctt
     3061 ggcagcaatt agcttgggca actaaagcta aaggcaaaaa ttggatggaa aaaatcacgg
     3121 tggagagtgt gaaacaaaaa gtagttgaaa ctttaaaaat tacgttgtaa agtttgtgta
     3181 ttaaaagatt tacacaaaag gaaattaaaa tgaacacagt gtttaatcaa gatagcgtgc
     3241 ataacgtaaa tatccaagat gaaaaggtat tactgacccc acaagagtta aaacaagaat
     3301 ttccgttgcc ggaacattta cgcaatcaaa ttgaacgttc acgcaaaacg atttccgata
     3361 ttattcacag acgagataaa cgccaactga ttgtgattgg accttgttcg attcacgacc
     3421 cagttgctgc ccttgaatat ggtaaaaaat taaaagctct ttcggagcaa gtgagtgata
     3481 agttgtatat tgtgatgcgg gtttattttg aaaagccccg cactactgta ggttggaaag
     3541 ggctgattaa cgatccgaaa atggacggct cttttgatgt cgaaaccggc ttacgtatcg
     3601 cacgaaaact ctgtttggat ttagccgaac ttggcttgcc gttagcgacc gaagccttag
     3661 atccgatgac accacaatat ttagcggatt tgttcagctg gtcggcaatt ggagcaagaa
     3721 caactgagtc tcaaactcac cgtgaattag cctcaggttt gtcaatggcg gtaggcttta
     3781 aaaatggtac agatggtgat ttagccgttg cacttaatgc gatgcaatct tccgctcaaa
     3841 gccatagctt tatcggcatt aaccaacagg ggcaagttac tttactcaaa acaaaaggta
     3901 atgcagacgg acatattatt ttacgtggcg gtaaaacccc aaattatgaa aagcaatatg
     3961 ttgatgattg tgaatgggtg ctaaaacaag caaacttacc tacagcgatt atgattgatt
     4021 gcagccacgg caattccaat aaagattacc gccgccaacc gctggtggca gaaaatgtat
     4081 tagagcagct acttgctggc aatacttcga ttatcggttt aatgattgaa agcaatttac
     4141 acgcaggtaa tcaatcatca gaattgccgt tcgagcagat gaaatacggt gtttctatta
     4201 cggatgcttg tattgactgg caaactacag aagagctttt aactcacttt gctgaaaagt
     4261 tgcgttaaag ataatttgca aaaaattgca taaaaacgac cgcttgtaaa ttggtaacaa
     4321 atatgaaccc attagcccca ttacgagaac aaattgatca agttgatcaa caacttatcg
     4381 ccttactttc tgaacgctta gctcttgtgg cagaagttgg gaaagtcaaa tcagaacacg
     4441 gcattcctgt ttatgctccg gagcgagaaa ccgcaatgat ttccgcccgc cgctctgaag
     4501 cggaaaaaca aggtattccg gcggatctca ttgaagatgt gctacgccgt ataatgcgtg
     4561 aatcttatgc caatgaaaac aaacacggct tcaaaagagt taattcggac attcaaaaaa
     4621 tcgtgattgt tggtggtaaa gggaaattag gtgggctgtt tggcaattat ttaaccctat
     4681 ccggctataa tgttgaggca ttaggacgtg atgattggga caatgccgag cagattttag
     4741 ccaatgcaga tgtggttatt gtgtgtgtgc cgattgccaa caccctagca accatcgagc
     4801 gtttacaatc ttatttaacc gaaaatatga ttttggcgga tttaacctcc gtcaaacatc
     4861 agccgttgca aaaaatgctg gaagtgcata atggagcggt agtcggttta cacccgatgt
     4921 tcggaccgga tattgcaagt caggcaaagc aagtggtcgc ttgctgccac gggcgtttcc
     4981 ctgaacgtta tcaatggttg cttgagcaaa tcaaaatttg gggggcaaaa attgaagaga
     5041 ttgaggcagc agcacacgat aatgcaatga cctacattca agccctacgc cacttttcca
     5101 cttttgcatt cgggctacat ctttctcgcc agccggtgca actctctcaa ttattggcac
     5161 tatcttcgcc gatttaccgc ttagagttgg caatgattgg gcgtttattt gcccaagacg
     5221 gcagcttata tgccgatatt attgccgata aaccggaaaa tttagccacc atcgaaacct
     5281 taaaagagag ttttgaacaa gggctagatt tctttaaacg caacgacaaa gccggtttta
     5341 tcaaggcttt tgaggaagtg catcactggt ttggcgatta ttccgagcag ttcttgaaag
     5401 agagtagagt attgctccaa caggctcacg attcaagaaa gtaaaggtag gttgaggttt
     5461 tgctctgata gcactagcgt ccacgctagt gctatttaat attctacaag cggttaataa
     5521 agagctgttt tttgcaaatt tttatgcaaa attatccgct tgttttggca cgagcgtgga
     5581 cgctcgcgcc atcggaagaa acatttttgt aaaattgccc ccaaatctga ccgcttactg
     5641 tggctgaatt tctccatttt ttaccgtaaa caaacaatca tcgcttctgt cttgccattg
     5701 catttgattg agctgatctt gagtaatggc ggtaacgaat acttgtgagc cactttctct
     5761 taaacgatgt gctaaaagct cacgtttggt tgggtcgagt tcggaggcaa aatcgtcaat
     5821 taaaaatagg cattggcgtt gtttttgggc gaccaaatgt tcgccttgag ccagtcttaa
     5881 cgcacacatc aatagcttta attgcccacg ggaaagcaca tcttccaccg gtaagccgtt
     5941 cgctttaaaa cggaaatcgg ctttttgagc tccaatcatc gtatagccaa gagctttatc
     6001 ccgctcaaaa ccttgtgcca gaatctcggc ataatccgcc cctttttccc agccttgatg
     6061 aaagctcaag ccgatttcga tttccggcag gaaaaattgg caggttttct caatttcggg
     6121 gcgtaacgct tcggcgtatt cggctcgcat ttcgctcacg gcataagtgg ttttcaccaa
     6181 ttcgatatcc cacgctttga gttcttgata agagcggact tgttgcaaag ccgaattacg
     6241 ttgctttaat aaacggcgaa gattgttcca atgagcgtag aaatcagggt gctggtgaaa
     6301 taagccccag tccaaaaaag cacggcgaaa gctcggacca ccgttaagta aggttaagcc
     6361 ttcgggggtg atcacttgca tcggcaataa atgggctaaa tcggcaattt tgttgccgtc
     6421 ttcaccgttg attttaagtg tcgtctcgcc actgcgaaat ttctgaatgc cgaccgacca
     6481 actgtgcttt gcctcgtcaa ttttaccgtg tagtacgaaa tcgtctttat cgtaatggat
     6541 aatgcggttg ctgatatggc ttttgaatga acgcccgtgt ccaagataga aaattgattc
     6601 caacaaactg gttttgccac ttccgttcgc cccgactaaa aaattaaaat gcgggctaaa
     6661 tgctaaatcg gtatgttgga tatttctaaa atggttgatt aataaacggg ttaaagccat
     6721 agttaaagtg cgaggaataa aaagagtagc cattttagca aatttgcaaa attttgggaa
     6781 aaattaaccg cttgcggatt agaaagtggt tcagtagaat aagccgttta ttttttattg
     6841 aaaattaaga ggaaaaatta tgtttggaaa aggtggctta ggcggcttaa tgaaacaggc
     6901 tcagcaaatg caagagcgta tgcaaaaaat gcaagaagag atcgcccaat tagaagtaac
     6961 aggcgagtct ggtgcgggtt tggtaaaagt cactattaac ggggctcaca attgccgccg
     7021 aattgaaatt gatccatcat taatggaaga tgataaagag atggtggaag atttagttgc
     7081 cgctgccttt aacgatgcgg ttcgccgtgc agaagaaatg caaaaagaga aaatggcaag
     7141 tgtgactgcc ggtatgcaac tgccgccggg tatgaaattc ccattctaat ttaagtatgc
     7201 aaaccagtcc tttacttgaa aatttgatgg aagccttgcg tgcattgccc ggtgtcggac
     7261 cgaaatcggc acagcgaatg gcttaccatc tgttgcaacg taatcgttcc ggcggtgtgg
     7321 cgttgtcaaa agccttaaat gaggcaatga gccatatcgg acattgcaaa tcgtgccgta
     7381 cttttaccga agaggaagag tgtacgattt gtaaaaatcc tcgccgtcag atgagcgggc
     7441 aactttgtgt ggtagaaatg ccggaagaca ttcaagcgat tgagcaaacc gggcaatttt
     7501 cagggcgtta ttttgtgctg atggggcatt tgtcgccgat tgatggtata ggccctcgtg
     7561 aaatcggctt agatttattg caacaacgct tggaacagga atctttccac gaagtgattt
     7621 tggcgactaa tccgaccatt gaaggtgatg ctaccgcaaa ctacattgct gaaatgtgca
     7681 gaatgtataa cgtgaaagct actcgtattg ctcacggtgt gccggtcggt ggttcattag
     7741 aaatggttga tggcacaacg ctttctcact cttttgcagg acggcgtgat attgatattt
     7801 aaagctattt ctgtgctaac ttaattctga tataattact caactatttt aaattattat
     7861 tttgaggcta aaaatggaaa ctattgacaa aatcaaacaa caaatcagcg aaaatccgat
     7921 tctactttat atgaaaggtt caccgaaatt cccatcttgt ggtttctccg ctcgtgcggt
     7981 ggaagcggta attaactgcc aagtgccttt cggttatgtg gatattttaa ccaatccgga
     8041 tattcgtgcg gaattgccaa aatttgcaaa ctggccgact ttcccacaat tatgggtaga
     8101 aggtgaatta gttggcggtt gtgacatcgt attagaaatg ctccaaaaag gcgaacttca
     8161 aaccttatta aaagaaaccg cagcaaaaca cgcagcataa tttcaaacca gtatgttaag
     8221 gctcttatgt ttaagagcct taattttttc ttgcgattta ggcttaaact tcttacctca
     8281 agagctattt tgttttagaa tgtcaaaatt atttcgtaac ataaaaataa aaggacacaa
     8341 catggcatta aaagagttag attgggcaaa tttaggcttt tcttatatca aaaccgatta
     8401 ccgtttcatt gcacattgga aagacggaaa atggaatgaa ggcgaattaa ctcaagacaa
     8461 tacactgcat attcacgaag gctcaactgc cctgcactat gggcaacaat gttttgaggg
     8521 gttaaaagcc tatcgctgta aagatggctc aattaactta ttccgcccgg atcaaaatgc
     8581 cgagcgtatg caacgcaccg cagatcgttt attaatgcca cgtgtgccaa ccgagctgtt
     8641 tattcgtgcc tgtaaaaaag tggtaaaagc caatcaagat tggttagggc cttacggttc
     8701 gggggcaacc ctttatttac gtccgttttt aatcggcgtg ggcgaaaata ttggggtgaa
     8761 agctgcacct gaatttattt tttccgtatt ctgctgtccg gtgggggcat atttcaaagg
     8821 tggcttagca ccctcaaact tcattacaac cgactatgac cgtgcagccc caatgggaac
     8881 aggtggtgtg aaagtaggcg gtaactacgc tgcgagttta ttaccgcacg aattggcggt
     8941 tgagcaaagt tcaactaccc gtaaatttgc cgatgcgatt tatttagatc cgaaaaccca
     9001 taccaaaatt gaagaagtgg gggcggcgaa cttctttggg attaccaaag acaacaaatt
     9061 catcaccccg atttcagagt cgattttgcc aagtattacc aaatactcat tgctacacct
     9121 tgctcaagag cgtttaggta tggaagcgat tgagggagat gtgtatatcg accagttaga
     9181 ccaatttgcc gaagccggtg cttgtggtac ggctgcggtg attacgccgg ttggtggtat
     9241 tcaacataaa gacaaattcc acgtcttcta ttcagaaacc gaagtggggc ctgtcacccg
     9301 ccgtttatac gcagaattaa ccggtattca atttggcgat gttgaagcac cgcaaggctg
     9361 gattgtaaaa gtagagtaat tttacacaag taacaagcgg tcgaattggc aaaacttttt
     9421 gcaaattcaa ccgcttgtct ttatttagag aatatgaaaa agttaatttt tttaggttta
     9481 tcagcacttg cattagctgg ttgttcctca acaatttcta atcctaatca actgattggg
     9541 caatggcaat gcactattga gtacgatgat tttaatattc gtacggtgga taatttacga
     9601 ttttccacaa atgggactat gaccaatcaa ggtggtatat attaccctat tcaaaagtcg
     9661 atttttgagt attcattaca acagaatggg cgctggagtg tgaaaaacgg ggctattgtt
     9721 tatcgtatcg tctcagaatc tgtacagcgt agccatcgtt cacaaatatg gtctgaatta
     9781 caacgtgatg cggagctaca acaatttgaa gagaatttat ttagctcact ttctgatagt
     9841 gataataata aaacagtgga actaatcatc actgattttg atgaaaaaga aatggatatc
     9901 aagcaagaaa taaaagggca taaagcttat aaagggcaat gtataaaaca gtagaggtaa
     9961 aaatgattca acgttttgaa gtaggtagcc gtttttcgga aatggcaata cataacggtg
    10021 tggcttactt ggcagggcaa gtgccgttag atgacaccgc cgatgcttac acccaaaccc
    10081 agcaagtgct tgcagaaatt gataaatggc tggcaaaagc caacagcgat aaaagtaaaa
    10141 ttctaatggc tacggtttat ttaaaagaga tggcagatta tgcggaaatg aaccgtgcgt
    10201 gggacgaatg ggttgcccca aataacgctc caccaagagc ggcggtggag gctaaattag
    10261 ccaatccaaa ttggaaagtc gaaattgtgg ttaccgctgc ggtataaatg aaaagcagaa
    10321 agacgatctc tgtttttcat tatgattcgt acattttttc gatttgttgc ttatagcgtt
    10381 ctagaatgac ctttcgtctt aattttaatg taggcgtaat ttcttccatt ttggtgctaa
    10441 atgcttgcga aagtagtgta aactttttga tctgttcaaa acttgcaagg tctttttgta
    10501 attcgttaat gcgttgttca aacattctga caacctcata atgtttaatg agttctaatc
    10561 tgtcttgata gcgaatattg agcttttttg catactcttc gaggctatca aagcaaggaa
    10621 ctatcaacgc agaaacatat tttttggcat cagcaatcac cgcaatttgc tcaataaact
    10681 tatctttacc tatttttcct tcaatgtatt gtggggcaat atatttaccg tttgaagttt
    10741 tcattaattc tttaatacga tcggtaatat aaagattgcc ttccgaatcc agttcaccgg
    10801 catctcccgt ttttagaaaa ccttcagcag taaaggcttg agcagtggct tccggttttt
    10861 tgtagtaacc tttcataacc aagcctccac gcactaaaat ttcattttct tcactaattt
    10921 tgacctcaac atcaggcatt aaggtaccgg ttgagttgat attaaagcct ttttcctgcc
    10981 agcatgaaat agtggcagta gtttcggtca ttccgtatcc aagttttaca ttgatgccta
    11041 tactttggaa aaatagcccg atagacggat ctaatttagc tcctccacac ggcatcatac
    11101 gaatacgacc gcctagtaag gctcgtaatt ttcctagcac caatttatct gccataatgt
    11161 actgcaagcg gtggaaaaag gctgattttt taccaaacag attgtcttcg gcggtacgga
    11221 ttgcccattt aaataacgct cggcgatgta tcggtgcttg ttggacttta tcccacaccg
    11281 cagtatagat tttttcatag aaccttggta cggcacacat taatgtaggt cgtaccgttg
    11341 agagtgcttg acgtacctgt tgaggatctt ccagatagca atttactgcc cctctgtata
    11401 gcacataagt gacccaagca cgttcaaaga tatgcgataa aggtaaaaat gaaagggata
    11461 tatcattttc gtcaatatga gggagtgctt tattatgtgc ctgaagttga tgagctaaat
    11521 tagcataatc taacataaca cctttaggct caccggttgt tcccgaggta taaattaaag
    11581 tgaataaatc ctctaagcat ttatcattta aacgtttggt taattcagct tcatcttgat
    11641 taaccttaat gaaatcttgc caatgttgag cgatagggaa atcacgcaga tctattgagt
    11701 ctttcatcgc gacaattttt attaatagcg aacagttgtt cgctatttct atggcttgat
    11761 catattgttc ctgatcgcca acaaagagga tttttatatc cccgtcattc aggatatatt
    11821 caagttgttt ggtggtactg gttgcataaa tcggcactgc taccgcacga atttgcattg
    11881 cagcaatatc ggtaattgtc caacgaggca tattttgtgc aaaaatagcg attttctctt
    11941 gaacggcaag accgtttgcc agcaaggcat aagaaagatt attgacctgt ttttgtaatt
    12001 ctaaccaact tatttctgac catttttcat cttgcataaa acgtaaagct gggtggtggc
    12061 taagagcctg aacttgctgg tggaaacggt ggataaagtg aaaatctaaa gtgctcataa
    12121 tcttattttt actttctatt tcagtgaaca gttgtacgct aatataatag aaaatatgaa
    12181 aaaaagaaac agttgtactc tgaaacaaag ggttttggat aggaagtaat caaggcaata
    12241 gaaatagata agtagggtat cgtttagtac aaatgcaata tttttcaaaa atgagaccgc
    12301 ttgtatatgc aacaagcggt ctgttttgtt aaaaattttg caactaaatt cgttcaatat
    12361 caaattgagc taaatcaatc acatcaggtg taccgtaaaa agcacagagg gctttacgca
    12421 aggtttcagc tcgtttggga aggtagccac gttctgcata gagcttgact tggtcgtaca
    12481 ctgcttgttt aaaggctgaa ttatcgccgg gattgcccga gagattgtcg gcactagcaa
    12541 aataacgaaa accggcagca gttgctaaca cccattcaat cgcttgcggt ttgatttccg
    12601 cactttcaaa ttcacgttgg cgttcggcag agcgtccgtc cggctcgtac caatagccaa
    12661 aatcttcaag tttacgccga gcttctccag caacgagcca atgggcaatt tcgtgcaagg
    12721 cactgctgta atagccgtga gcaaataaaa tcacattgta agggcgttcg ctcggcacac
    12781 catcttcgtc cataaattcg ggcaagtaaa tcggataatt acccccccgc tctaggcgag
    12841 tgttatattc atcagaaaag cattgattaa aaatgcgaat aatgtcttca attttatgat
    12901 tttcttgatt catttctttt ctttataact tattcagcca agctaaaaat tgctcggcat
    12961 ccaaaaagcc agtaacacga gattggctca tttcattgcc gttttcatca aaaaacagaa
    13021 tcgttggcaa acctaataca ttaaagtgtt tcatcagctc gatattttca gccgagtttt
    13081 tcgtcatatc gatttgcaac actaccattt cattcagttt gttctgaaca ttttggtcac
    13141 taaaggtgta tttttcaaac tctttgcagg cgacacacca gtcggcatag agatcgagca
    13201 tcactttttt acctttggaa gcggtcaatt ttgtctctaa atcggcaagt gattgaattt
    13261 tttctaacgc taagtgcggt gtagtttgct gttgagtggt tgagccgttc caagctaaat
    13321 ctgcccaagg tttagcggca atggctaaag cgagcaataa taagactttg atgatctttt
    13381 tcgtgattga attagatgga atcgcatcca ccaaccagat caaaaatgca accgcaaggg
    13441 ccgaccataa aaacggttca tagtggcttg gcagcacacg gcttaataag aacaccggta
    13501 aggcaagcat aacaaaaccg aatgcagctt tcacttttaa cagccattcg ccggattttg
    13561 gcagaatttt gttgccgaat aaggtaatca aaatcagcgg taagcccatt cccagtgcga
    13621 gtagatagag ggctaagcca ccggtgacta aatcgccact ttgtgccaca taaagcaacg
    13681 caccggaaag tggggcagaa gtacaagggg aagcaattaa gcctgcgatc atccccatta
    13741 aaaacacgct acccaacgca ccaccttgct gtttttggct cattgcattg agtttttgtt
    13801 gccagctatt tggtagctgg atttcgtata agccaaacat tgagcaggca agcagaataa
    13861 agacgataga taaaccaatc aacaccggtg ggctttgtaa ggcgatttgg aaaggcaagc
    13921 cgatagccgc tacaattaag ccaagtaagg tgtaagtaac tgccattcct tgcacatagg
    13981 caatacttaa cagcaatgct ttagcggtag aagggcgttg cttatttcca attacaatcg
    14041 cagagagaag tggtagcatc ggcagtacgc aaggagtgaa tgctaatcca acgcctaata
    14101 caaaaaacca aaaaatggaa aaacgattgt tagctaaatt ttcagccagt tgatcttgct
    14161 ctgcttttgc cacattttca gggggcgcca tattgtcggt ttttgcaaaa ttttcgctct
    14221 tttcgaccgc ttgtgcttcc agttgcgcca gttcttcagg tgtagcagag agaatactgt
    14281 ctaatttaag ctcaacccgt tccggtggat agcaaaagcc tttggtacac ccttgatatt
    14341 ccactacgat tgaggcgttg tctttaattt ctttaaacgg tacctttagc cctaagtggt
    14401 tgcgatagat ttccacctgc ccgaaaaatt catcgttata ttgctcggca gcgggaaaag
    14461 tgatgtcgcc tatctcaata ttctgtggcg tgacacggat ttctttttta taaagataat
    14521 aattgtctgc aatatcccaa tttaactgta atgtttcatt ttcattttgg attgaaaaaa
    14581 caaaggcttc ttccgatttt aggaatttgg gttgagagaa aagatttgcg tgagatgagt
    14641 ttatcatcaa taaactcaag acgagtgaaa aaaagtatct aatcatattg aaatcctatt
    14701 tttaattgtc tcggcgaaaa ttatagcgta atcagtattc atattccaaa taaatta
//
LOCUS       DANLZD010000062        14654 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.062, whole genome shotgun sequence.
ACCESSION   DANLZD010000062 DANLZD010000000
VERSION     DANLZD010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14654
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.062"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            131..1639
                     /locus_tag="PXE26_001347"
     CDS             131..1639
                     /locus_tag="PXE26_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDL5593933.1"
                     /translation="MSNQSSNAPQRETFSGRGAFIMAAIGSAVGLGNIWRFPYTTYEN
                     GGGAFILPYIIALLTAGLPLLFLDYSIGHKYRGGAPLAFRRFSSKFETFGWWQVLINV
                     IIGIYYAVVLGWAASYTYFSFSGAWGDKPVDFFIGEFLKMGDITQGVSFEFVGMVTGP
                     LIAVWLIAIAVLAMGIKKGISAASNLLMPQLIVMFLVLVGYSLTLPGAAKGLDALFTP
                     NWEKLADPSVWIAAYGQIFFSLSICFGIMITYASYLKKETDLTGSGLVVGFANSGFEL
                     LAGIGVFAALGFMATAAGQEVNEVAKGGIGLAFFAFPTIINQAPMGALVGVLFFGSLT
                     FAALTSFISVIEVIISAVQDKLNSGRVKATLLVGIPMMVVSVLLFGTTTGLPMLDVMD
                     KFVNQFGIVAVAFVSLIAIVTSEKLSTLEKHLNEVSSFKVGFIWRLCIVITSGVLAFM
                     LFSEIAKVYREGYEGYPSWFVNTFGWGMAIGLVVVAYLLSKMAWKNEPKGDE"
     gene            1639..1737
                     /locus_tag="PXE26_001348"
     CDS             1639..1737
                     /locus_tag="PXE26_001348"
                     /inference="COORDINATES: protein motif:HMM:NF028261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine/alanine import family NSS transporter
                     small subunit"
                     /protein_id="HDL5593934.1"
                     /translation="MSSAAIITMVVAMTIIWGGLLFAIKRLPKEEQ"
     gene            complement(1785..2048)
                     /locus_tag="PXE26_001349"
     CDS             complement(1785..2048)
                     /locus_tag="PXE26_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GrxA family glutaredoxin"
                     /protein_id="HDL5593935.1"
                     /translation="MFVEIYGRLSCPYCVRAKTLAEKMKQELSDFDFKFIDMIAENIS
                     KQDLEPRVGKPVATVPQIFVDNNHVGGCTDFQAFVEEKFGITV"
     gene            2208..3542
                     /gene="srmB"
                     /locus_tag="PXE26_001350"
     CDS             2208..3542
                     /gene="srmB"
                     /locus_tag="PXE26_001350"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase SrmB"
                     /protein_id="HDL5593936.1"
                     /translation="MTQLMTFEELDLSPQLLKALAHKGYNRPTAIQQATIPAALEGRD
                     LLGSAPTGTGKTAAFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEQAQALAK
                     FTQLSIATITGGVAYQNHGEVFNKNQDIVVATPGRLMQYIKEENFDCRAVEVLIFDEA
                     DRMLQMGFGQDAEKIAAETRWRKHTWLFSATLEGELLEDFAERLLNDPIKVDAEPSRR
                     ERKKIQQWYYHADNVEHKTKLLARIISEFSVERAIVFVRRREDVRELSETLRKRGIRS
                     TYLEGEMAQTQRNQAINRLKEGVVNVLVATDVAARGIDIDDIDFVLNYDLPYSADTYL
                     HRIGRTARAGKKGSAISLVEAHDYKLLGKIKRYTEEVLKPRIIEGLEPRTKAPKDGEL
                     NVTSKKEKARIKKKKEAKKEAAKPKVKVRHKDTKNIGKRRKPSSESAAVKQA"
     gene            complement(3611..3904)
                     /locus_tag="PXE26_001351"
     CDS             complement(3611..3904)
                     /locus_tag="PXE26_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL5593937.1"
                     /translation="MSKTMQQKAAEAHNMCRLKGDSMLDNADRQIAFEAVYESEELAQ
                     QAVEFFAQKAKSVETEPCEIQSEITQIAEGFLMKMWITFSCQAEVILFQMAVR"
     gene            complement(3906..4568)
                     /locus_tag="PXE26_001352"
     CDS             complement(3906..4568)
                     /locus_tag="PXE26_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDL5593938.1"
                     /translation="MPFPDEISELKGYFDGTNPVSAYPAQGLNVPFYILGSSPESAYL
                     AAERGLPYAFASHFAPRFMDDAIRIYRSHFKPSDVLDKPYVILGVNAIVAETDEEATQ
                     LATTQTQFFLNVVTNAQQNLQPPLESDDKVWENFVKAEIVPHFGPVAFEQNALYRQEK
                     TVVRQMTECSLIGSPQSVEQQLKALKARVEIDEIMAVNYIFDEQKQHQSYTWLKQITD
                     KV"
     gene            complement(4552..5004)
                     /locus_tag="PXE26_001353"
     CDS             complement(4552..5004)
                     /locus_tag="PXE26_001353"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MsnO8 family LLM class oxidoreductase"
                     /protein_id="HDL5593939.1"
                     /translation="MVLQVLNSKAIQPFLYANSENKMTNLSILNLVPIREGQTAKQAV
                     DSMVKLAKHAENIGIERYWIAEHHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLP
                     NHSPYIVAEQYGTLETLYPNRVELGLGRAPGTDMRTASALRPEFAFPR"
     gene            complement(5024..5662)
                     /locus_tag="PXE26_001354"
     CDS             complement(5024..5662)
                     /locus_tag="PXE26_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDL5593940.1"
                     /translation="MKKFALKTVLVALSALFAFNATAVAADPTAGKEYIEVRKAPSAQ
                     KEVVEFFSFYCPHCYDFELNYKIPSQIKAKLPADSKLVQYHVNFLGRQSENLTRAWAL
                     AMALGAEDKVKTALFEAAQKDAFKSMDDIRAVFIANSISAEQFDSGINSFAVNGLVNK
                     QVQLAEDFQIRGVPAFFVNGQYQLNLEGFSDSSSTNDFIQRYIDAVVFLSKK"
     gene            complement(5706..5975)
                     /locus_tag="PXE26_001355"
     CDS             complement(5706..5975)
                     /locus_tag="PXE26_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihD family protein"
                     /protein_id="HDL5593941.1"
                     /translation="MKCKRLEELLELLGEHWRKNPDLHLIDILQQLSVEVSEPDNFHA
                     LRDEVLIYQLKMRNADKFEPIPGIKKDYEDDFKTALLRARGILND"
     gene            6067..7176
                     /gene="mobA"
                     /locus_tag="PXE26_001356"
     CDS             6067..7176
                     /gene="mobA"
                     /locus_tag="PXE26_001356"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDL5593942.1"
                     /translation="MEEKISAVILAGGLARRMNGAEKGLQLLDQKPLISHLLARLSPQ
                     IEDIWLNINRSVEQYQQLYPELPYYQDSLPDFQGPLSGMLSGFEQIESDYLLFVPCDT
                     PFIPTQLLHKLHTALRINQAQIAYAHDGDRPHPTVALVHRSVAENLRAYLASGERRLL
                     WFFQTQKSVAVDFSAYKAAFRNFNCLEDLTAFNPYPIKTLAITGYSGTGKTTLLEKLI
                     PKLTACGIRVGLIKHSHHNVDIDKKGKDSYRLREAGANPTMVVCDERWALMTETKQAA
                     ETKQAVEFSQLIAKFDPETVDLVLVEGFKHETMPKIQLHRKEIEKPLPALDQWTIATA
                     TDYPLERENRLDINDVEQLADFIRQWLEASKEPAN"
     gene            complement(7231..11742)
                     /locus_tag="PXE26_001357"
     CDS             complement(7231..11742)
                     /locus_tag="PXE26_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5593943.1"
                     /translation="MINKNFPLSYLASFVAFAVSLSATASVFRDDIDLQYYRDFAENK
                     GKFTVGASNIEIKDKSGNTLDALFPNVPMPDFSAANRNLGIATLVAPQYLVSVAHNTQ
                     YNTVEFGAPGTNADAHHYTYKVVDRNDYGIVEGGQHQDYQVPRLNKLVTEVAPATVTD
                     LGNNASAYQDSSRFTHFARLGSGRQIVKNTEHKDNQISTSYQYLTGGVHLPIAVHNSD
                     YWLDFRGNALNNSPYGALTAFGTRGDSGSGVYGYDQKTKRWLLLATYTFGTPANNYYN
                     RAGIIRQDYHDKQFAEDIAGTLTNAQQNAVFEWSAQGKDSSIGNKGKNLTVSLADRSI
                     KDNSASPLGYGGTPQLQLPQDNTGKTLNIEGQDSTIVLKTDIDQGAGALNFNANATVR
                     PENDQSWVGAGIVVAKGKQVNWQVKNPQGDRLSKLGEGTLHINGKGENLGDISVGQGT
                     VILTQQAGENGKKSAFNQVGIVSGRSTVVLNSADQVDPNKIYFGFRGGRLDLNGNNIA
                     FNRIQNSDDGARIVNNHLQKAATLTINGPKPPEATDLKWGTWKENSADIYEYINPHAN
                     NRTDYFTLKGNPNQYMPTNGASNAHWTFLSSNKDAAVKQVLAQKGLEHRYNSFNGFIG
                     ETDNTQHNGRLNVVYDPKASTPPATASEVTWGKGLVAGADIYLFTNPKTKIREYFALK
                     GDPKQPVPRGGLSSEHWEFLAADRNQAINKVLARKNAPIEQEKLNSIYTFSGGLNLNG
                     DLTVKGGKVLLSGRPTPHAYDAINKQDVVYADDWQNRQFKADNMQLNQYAQLYVGRNV
                     SNLQANLSANDHAQLHLGFINEQTPSCYYSEYTGKTSCDTQAVVSNEIFATLPTTQIN
                     GDVSLAEQSQLHIGKANLIGTIQAAATTSIRLANQASWTNTGDSRTGNLVAENGSTIN
                     LNEKFVTGEIPTRFNTLIIDGNFQGNAKINYLTDIAAGKGDHLQVNGLAEGTFTLALR
                     NSGKEAEVVSPLSLLTLTHQAQADKAKVSLENGYVDLGAYRYVLANRSNGYRLYNPLK
                     DAKDRNQSIATAKAELDHAIAEADKQKQEISRLNAEAEKERQAEKNAKQAAANAQSQL
                     SQANSELTRLQQYADYYRRYYPTYYRQIQGQITVAKQKVTQASAALTTAENNAKASAA
                     QIANVEQAVETAQNIAKQVEAKLATLRITAGNSEAILNAEALKLCQENGANCEHLQAH
                     ADTDSSNIQQSDWVSQYANTALSELSAQANSALQIGQDLDRQLFAKHDKFHVWSSIEH
                     QKTEHQSDLYRPYEQQTNLTQLGIELPLANGINAGVMLSRNHANAEFDEGVNGKSNLL
                     MASLYGKWHSENGTFVSLDGSYGKAKNRIDLFGENRFNRHIMAIGANLGHNFDLAGVQ
                     VQPAVGTRYYRFSAQNYKLGEVEVRSPKAHFMAYQAGVKVSKAFDLSSWKVEPSLAAH
                     YVDASSKRLSVAVNDNTFSQRFGRYLKTEVGVGVTKGQWQLSSHLGLLKGNEIGKQHF
                     AGFKLGYSW"
     gene            complement(11926..12930)
                     /gene="fbp"
                     /locus_tag="PXE26_001358"
     CDS             complement(11926..12930)
                     /gene="fbp"
                     /locus_tag="PXE26_001358"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HDL5593944.1"
                     /translation="MKTLGEFIIEKQAEYPGAKGELSGILSSIRLAAKIIHREINRAG
                     LSQDILGTAGSENVQGEAQMKLDVFANETMKKALLAREDVAGFASEEDDNFVAFDNER
                     GRNAKYILMTDPLDGSSNIEVNVSVGTIFSIYRRVSPIGTPVTQEDFLQEGRKQVAAG
                     YVTYGSSTMLVYTTGNGVNGFTYDPSLGLFILSHPDLKTPTEGKYYSINEGQYVTFPQ
                     GVKRFIKYCQETDEAIKRPYSSRYIGSLVSDFHRNLLKGGIYIYPTSTVYPKGKLRLL
                     YECNPIAFLAEQAGGMATDGINPILDIKPTELHQRVPFFVGSTSMVKQAGEFMQEFAK
                     "
     gene            13054..13845
                     /locus_tag="PXE26_001359"
     CDS             13054..13845
                     /locus_tag="PXE26_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HDL5593945.1"
                     /translation="MNNLRIKMISPEIALAKYNELDVLEINHSKVKAKIALQGAQLLS
                     WQPKNTQQDVLWLSEIEPFQTGVAIRGGIPICHPWFGTDKKPAHGTARIQAWNLLEHT
                     SSADGIRVVLGLENQAKLEMILGEVCELYFTHLAPEPAQAALHTYFQVGDITKTEVQG
                     LATQCFDKLTNQEIEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETV
                     LWNPWHNTVSAMTETAYQNMVCVETARINTLLQQNETLGVRILVR"
     gene            complement(13913..14602)
                     /locus_tag="PXE26_001360"
     CDS             complement(13913..14602)
                     /locus_tag="PXE26_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HDL5593946.1"
                     /translation="MLQLRKANERGDGSFSWLKSYHTFSFANYYDLKHIHFSHLRVIN
                     EDFIAPNHGFGKHPHDNMEILTYMLKGRVAHEDSMGNKTEVKAGEFQIMSAGTGVFHS
                     EINPDPNETLHLYQIWIIPNQKDVTPRYNQDRFAPKEGATLILSPNAEEGSFKIYQDM
                     KLWRYQYPTAKSEQLALEPNRSYWLQVVKGNLNINGVELSTSDALGIRQEKALEINTQ
                     DDVEFLLFDLV"
BASE COUNT         3938 a         3000 c         3256 g         4460 t
ORIGIN      
        1 tctgtttttc tatatttttc tactttacat tcaacctgaa attgggcata ttccgcactt
       61 aaagtgtgat taatttacat ttaactcaat tcttttttat ataaaacttt atcagtttga
      121 ggtatttacc gtgtctaatc aatcatcaaa cgcaccgcaa agagaaacgt tctccggacg
      181 tggtgcattt attatggcgg ctattggttc cgctgtcggc ttagggaaca tctggcgttt
      241 cccttatact acttatgaaa acggcggtgg ggcttttatt ctgccgtata tcattgccct
      301 tttgaccgca ggtttaccgc tgctgttctt agattattct atcgggcata aatatcgtgg
      361 tggtgcaccg ctcgctttcc gccgtttcag ctcgaaattt gaaaccttcg gttggtggca
      421 agtgctgatc aacgtgatca tcgggattta ttatgcggtg gtactcggct gggcagcaag
      481 ttacacctac ttctcattca gcggagcgtg gggcgataaa ccggtggatt tctttatcgg
      541 tgaattctta aaaatgggcg atattactca aggcgtgagc tttgaatttg tcggtatggt
      601 tacagggccg ttaattgcgg tatggctgat tgctattgct gtgttggcta tggggatcaa
      661 aaaagggatt tctgctgcct caaacctgct aatgccgcag ttgatcgtga tgttcttagt
      721 gttggtcggc tattcattaa ccctaccggg tgctgcgaaa ggcttagatg cgttatttac
      781 cccaaactgg gaaaaattgg ctgatccaag tgtgtggatt gccgcttacg gtcaaatctt
      841 cttctcactc tctatctgct tcgggattat gattacctat gcttcatacc tgaaaaaaga
      901 aaccgattta accggttcag gcttagtggt gggttttgcg aacagtggtt ttgaattatt
      961 agcgggtatt ggcgtatttg cggcactcgg ctttatggca acggctgcag ggcaagaagt
     1021 gaacgaggta gcaaaaggcg gtatcggctt ggcattcttc gctttcccaa ccattattaa
     1081 ccaagcacca atgggggcat tagttggcgt gctgttcttt ggttcactca cctttgcggc
     1141 attaacctca tttatctcgg taattgaagt gattatttca gcggtgcaag acaaactcaa
     1201 ttcaggtcgt gtgaaagcca cgctactagt cggcattccg atgatggtgg tatctgtctt
     1261 gctattcggt acaaccaccg gtttaccaat gcttgatgtg atggataaat tcgtaaacca
     1321 attcggtatt gttgcggtgg cgtttgtttc cttgattgcg attgtcacca gcgagaaatt
     1381 aagcaccctt gaaaaacacc tgaacgaagt ttcttcattc aaagtcggct ttatctggcg
     1441 tttatgtatc gttattacct ccggcgtact ggcatttatg ttattcagcg aaatcgccaa
     1501 agtgtatcgt gaaggttatg aaggctaccc aagctggttt gtaaacacct tcggctgggg
     1561 aatggcaatc ggcttagtgg tggtggctta tttgctatca aaaatggcgt ggaaaaatga
     1621 accaaaagga gatgagtaat gagttcagca gcaattatta ccatggtggt ggcaatgacg
     1681 attatctggg gcggtttact ttttgcgatt aaacgtctgc cgaaagaaga acaataattt
     1741 gcaaattttt gtataaaaaa gcccgcttgt tagcgggctt ttggctatac ggtaatccca
     1801 aatttctctt ccacaaaggc ttggaaatcg gtgcaaccgc caacgtggtt attatccaca
     1861 aaaatttgtg gtacagttgc aaccggcttg ccaacacgag gctctaggtc ttgttttgaa
     1921 atattttcag cgatcatatc aataaattta aaatcaaaat cgcttaattc ttgtttcatt
     1981 ttctcggcta atgtttttgc acgcacgcag tatgggcaag ataaacgtcc ataaatttca
     2041 acaaacatat aatgttcctt ctataaagta aaagtgagcg aattgtccgt taaacggctc
     2101 tgtgtaagtg taacaatttt ttcaaccttt taggataaat ttcttcacca tcacggcaag
     2161 cagttaatgt gatatactgg ggcaaattta caagtagaga aacagagatg acccaattaa
     2221 tgacgtttga ggagcttgat ttaagccctc aattacttaa agccttagca cacaaaggct
     2281 ataaccgccc aaccgctatt caacaagcca cgattccggc tgcgttagaa ggacgtgatc
     2341 tgctcggttc agcccctacc ggtaccggca aaaccgccgc ttttttactg ccggcaattc
     2401 agcatttatt agattatcct cgccgcaaac caggggctcc tcgcatttta attcttaccc
     2461 caacccgaga gctggcaatg caggtggcgg agcaagccca agcactggct aaatttactc
     2521 agttgagcat tgcgactatt accggtgggg tggcgtatca aaatcacggt gaagtcttta
     2581 ataaaaatca agatattgtg gttgctaccc cgggtcgttt aatgcaatac attaaagagg
     2641 aaaattttga ctgccgagcg gtggaagtgc tgatttttga tgaagcagat agaatgttgc
     2701 aaatgggctt cgggcaagat gcggagaaaa ttgcggcaga aacccgttgg cgtaagcata
     2761 cttggttgtt ttcagcgacc ctcgagggcg agttattaga ggattttgcc gagcgattat
     2821 taaatgatcc gattaaagtc gatgccgaac caagtcgccg tgagcgtaaa aaaattcagc
     2881 aatggtatta ccacgccgat aatgtagagc ataaaaccaa attattagct cgtattatca
     2941 gcgaattttc ggtggaaaga gcgattgtgt ttgtccgccg ccgagaagat gtgcgagaac
     3001 tcagcgaaac cttgcgtaag cggggaattc gttctactta tctcgaaggt gaaatggctc
     3061 agacccaacg taaccaagct attaaccgtt taaaagaagg cgtagtgaat gtgttagtgg
     3121 caaccgatgt ggcggctcga ggcattgata tagacgatat tgatttcgtg ctgaactacg
     3181 atttacctta tagtgcggat acttacttgc accgtattgg gcgtaccgct cgtgctggca
     3241 aaaaaggttc ggcaatttca ttggtggaag ctcacgatta taaattactc ggcaaaatta
     3301 aacgttacac cgaagaagta ctaaaacctc gcattatcga gggcttagag cctcgcacca
     3361 aagccccgaa agatggcgag ctaaatgtga ccagcaagaa agaaaaagca cgcattaaga
     3421 agaaaaaaga ggcgaaaaaa gaagcggcaa aaccaaaagt aaaagtccgc cacaaagata
     3481 ccaaaaatat cggtaaacgg cgtaaaccaa gtagtgaatc ggctgcggtt aaacaggcat
     3541 aatgatacaa gcggttattt tctgaagatt ttttgcaaaa atttcatcaa aaataaccgc
     3601 ttgtttatat ctaccttact gccatttgga acagaatcac ttctgcttgg cagctgaaag
     3661 tgatccacat tttcatcaga aacccttctg caatttgtgt aatttcgctt tgaatttcac
     3721 aaggttcggt ttcgaccgat tttgcttttt gtgcgaaaaa ttcgaccgct tgttgagcca
     3781 gttcttcgct ctcatacacc gcttcaaagg caatttggcg gtctgcatta tccaacatag
     3841 aatcgccttt tagccggcac atattatgtg cctcagccgc tttttgttgc atcgttttgc
     3901 tcatattaca ccttatccgt aatttgtttt aaccaagtgt aggattgatg ctgtttttgc
     3961 tcatcgaaaa tgtagtttac cgccataatt tcatcaattt ccactcgtgc ttttagggct
     4021 ttaagttgtt gttcaacgct ttgcgggcta ccaattaagg agcattcggt catttggcgg
     4081 acaacggttt tctcttgtcg gtatagagca ttttgctcaa aggcaaccgg cccgaaatgc
     4141 ggcacaattt ctgctttcac aaaattttcc cacactttgt cgtcagattc gagcggtggt
     4201 tgcagatttt gttgggcatt ggtcactaca tttaagaaaa actgggtttg ggtggtcgcc
     4261 agttgtgttg cttcttcatc ggtttctgcc acaatggcat tcacacctaa aatcacataa
     4321 ggtttatcta acacatcaga gggcttaaaa tgtgagcggt aaatgcggat tgcatcgtcc
     4381 ataaagcgag gggcaaagtg tgaagcgaag gcgtaaggca agcctcgttc agccgctaaa
     4441 taggcacttt cagggcttga gcctagaata taaaacggca catttagccc ttgtgccgga
     4501 taggcggaaa cagggtttgt accgtcaaag tagcctttta attcgctgat ttcatcgggg
     4561 aaaggcaaac tctgggcgta aggcagaggc ggttcgcata tcggtgccgg gggctcgccc
     4621 aagccccagt tctactcggt ttgggtagag tgtttcaagc gtgccgtatt gttctgccac
     4681 aatataaggg ctgtggttgg gtaacatcac gccaccggag ccgactctta atttttcggt
     4741 gtgggagagg gcgtgttgaa tcaataattg cgtggcggaa ctggcaagat ttttcatatt
     4801 atggtgttcg gcaatccaat agcgttcaat gccgatattt tctgcgtgtt ttgctaattt
     4861 caccatagaa tcgaccgctt gtttggcagt ttgcccttca cgaatcggca caaggttgag
     4921 aatggataag tttgtcattt tgttctccga gtttgcatat aaaaaaggct gaatagcttt
     4981 actattcagc acttgtaaaa ccatctcctt aatatgggga cgattatttc ttactcaaga
     5041 agaccacagc gtcaatatag cgttggataa aatcattggt cgagcttgaa tcggaaaatc
     5101 cttctagatt aagctggtat tgaccattca cgaaaaacgc cggtacacca cgaatttgga
     5161 agtcttcagc taattgaact tgtttattga ctaaaccgtt tactgcaaag ctgttgatac
     5221 cgctgtcaaa ctgttctgca ctaatgctgt tagcgatgaa gaccgcacga atatcgtcca
     5281 ttgatttaaa cgcatctttt tgagcggctt caaacaaggc ggtttttact ttatcttccg
     5341 ctcctaatgc cattgccaat gcccaagcac gggttaagtt ttcagattgg cgacctaaga
     5401 aattgacgtg atattgcact aatttgctgt ctgcaggcaa tttcgctttg atttggcttg
     5461 gaattttgta atttagctca aaatcgtaac agtgggggca gtagaatgag aaaaattcca
     5521 ccacttcttt ttgagccgat ggggctttac gcacctcaat atactctttg ccggcagttg
     5581 gatctgctgc aactgcggtt gcgttaaatg caaaaagggc agaaagagca accagtacgg
     5641 tttttaatgc aaattttttc ataatgattc cttcaaaaat atgataagtg agaaataaga
     5701 caaacttaat cgtttaaaat tccacgagct cggagcaatg cggttttaaa atcatcttca
     5761 taatcttttt taatgcccgg aatcggctca aatttatcgg cgtttcgcat tttgagctga
     5821 taaatcaaaa cctcgtcacg cagggcatga aaattatccg gctcgcttac ttccaccgaa
     5881 agctgttgca gaatatcaat taagtgaaga tcggggtttt tccgccaatg ttcgccaagc
     5941 agttccaata gctcttctaa acgtttgcat ttcatagtat gcctcttaaa aaacttgttg
     6001 aatagtaagc ggaataatat acttttagcc ctcatttggc aaaaaaattc aggtttggag
     6061 agggaaatgg aagagaaaat ttcagcggta attttagccg gaggtttggc tcggcgaatg
     6121 aatggagcgg aaaaagggtt gcaactgtta gatcaaaaac cgttgatttc gcacctgtta
     6181 gcccgacttt cgccacaaat cgaggatatt tggctcaata tcaatcgttc ggtggaacaa
     6241 tatcaacaac tttaccctga attaccttat taccaagaca gcttgcccga ttttcaaggc
     6301 ccactaagtg gaatgctttc cgggttcgag cagattgaga gcgactattt actgtttgtg
     6361 ccttgtgaca cgccgtttat tccaacccaa ctattgcaca agttacacac ggcattacgc
     6421 attaatcagg ctcaaattgc ctatgctcac gatggcgacc gcccacaccc aacggttgcc
     6481 ttggtgcatc gttcggtggc ggaaaattta agagcgtatt tagcctccgg cgaacgccga
     6541 ttattgtggt tttttcaaac ccaaaaaagt gtggcagtgg atttctcggc atataaagcc
     6601 gcatttcgca attttaattg tttagaagat ttaacggctt tcaatccata tcccatcaaa
     6661 accctggcga ttactggcta tagcggcaca ggcaaaacca ccttattgga aaaattaatc
     6721 ccaaaattga ccgcttgcgg tattcgggtt ggcttgatta agcattccca ccacaatgtt
     6781 gatattgata aaaaaggaaa agacagctat cgcttgcgag aagcaggagc aaacccgact
     6841 atggtcgtgt gtgatgaacg ttgggcatta atgacggaaa ctaagcaggc agcagaaact
     6901 aaacaagcgg tcgaattttc acaattaatt gcaaaatttg acccagagac ggtagattta
     6961 gttttagtgg aaggctttaa gcacgaaaca atgccgaaaa ttcaactaca ccgtaaagaa
     7021 attgaaaaac cgttgccggc gttagaccag tggacaatcg cgaccgcaac cgattatccg
     7081 cttgagcggg aaaatcggtt ggatattaat gatgttgaac agcttgctga ttttattcgg
     7141 cagtggctag aggcaagcaa agagccggct aattaattga ctaaaaagcc cctaaagtaa
     7201 gcgattgctt agtttagggg ctaatagcaa ttaccagcta tatcccagtt tgaagccggc
     7261 aaaatgttgt ttgccgattt cgttaccttt caatagacca aggtgagagc ttaattgcca
     7321 ttgacctttt gtaacaccca cgcccacttc agttttcaga taacgtccga aacgttggct
     7381 aaaggtattg tcattgactg ccacactcaa gcgtttgctg ctggcatcga cataatgtgc
     7441 ggcaaggcta ggctcaactt tccagctgga gaggtcaaag gccttgctga ctttcacacc
     7501 tgcttggtag gccataaagt gtgctttcgg gctgcggact tctacttcac ccagtttgta
     7561 attttgtgcg ctgaagcgat agtaacgtgt accaacagca ggctgaactt gtacgccggc
     7621 taagtcgaag ttatgtccaa gatttgcccc aatcgccata atatgacggt taaagcggtt
     7681 ctccccgaac aggtcgatac ggtttttcgc tttaccgtag ctaccgtcta ggctgacgaa
     7741 agtgccgttt tccgaatgcc atttaccata taggcttgcc atcagtaagt tggatttacc
     7801 gttcactccc tcatcaaatt ccgcattagc gtggttgcgg gatagcatca caccggcatt
     7861 gataccgttt gcaagcggta attctatgcc taactgagtg aggttggttt gttgctcata
     7921 cgggcgatat aaatccgatt ggtgttcggt tttttgatgt tcgatactgc tccaaacgtg
     7981 gaatttatcg tgttttgcga acagttggcg atctaagtct tgcccgattt gcaacgcaga
     8041 atttgcctgt gccgatagct cggaaagagc ggtattggca tattggctta cccagtcgct
     8101 ttgttgaata ttactactgt cagtgtctgc gtgtgcttgt agatgctcac aatttgcacc
     8161 attctcttgg caaagtttta gtgcctcagc gtttaaaatt gcttcactat ttccagcagt
     8221 tatacgtaag gtagctaatt ttgcttctac ttgttttgca atattttgtg cagtttcaac
     8281 cgcttgttct acgttagcaa tttgcgcagc ggatgcttta gcattgtttt ctgctgtagt
     8341 gagtgcagca ctcgcttgtg tgactttctg ttttgctacc gtaatttgcc cttggatttg
     8401 gcggtaatac gttggatagt aacggcggta gtaatcagca tattgttgca aacgggttaa
     8461 ttcgctattt gcttggctaa gctgagattg tgcgtttgca gcggcttgtt tagcattttt
     8521 ctctgcttgg cgctctttct cggcttctgc gttcaaacgg ctgatttcct gtttttgttt
     8581 atccgcttct gcaatagcat ggtctaattc cgctttcgcc gttgcaatcg actgattccg
     8641 atctttagca tcttttaacg gattgtataa gcgatagccg ttgcttcgat ttgccagcac
     8701 ataacgatat gcacctaaat caacataacc gttttccagt gaaactttag ctttatcagc
     8761 ctgagcctga tgggttaagg ttaataaact taacgggcta accacttcag cttctttgcc
     8821 actgttgcgt aatgcaagag tgaaagtccc ctcggcgaga ccatttactt gtaggtgatc
     8881 gcctttgcca gcagcaatat cggttaagta gttgattttg gcattacctt ggaaattacc
     8941 gtcaataatc aacgtattaa aacgagtcgg tatctcgcct gttacaaatt tttcattcag
     9001 gttgatggtt gaaccgtttt ctgccactaa attgccagta cggctatccc cagtgtttgt
     9061 ccagcttgct tggttagcta aacgaatgct cgttgttgct gctgcttgaa tggtgccaat
     9121 caggttcgct ttgccgatgt gtaattggct ctgttctgcc aagctgacat caccattaat
     9181 ttgtgttgtg ggcagtgttg caaaaatttc attagaaacg accgcttgtg tatcacagct
     9241 tgttttacca gtgtactcag aatagtagca acttggagtt tgctcgttga taaagcctaa
     9301 atgtagctga gcatggtcat tcgctgacaa gtttgcttgc aggtttgaga cattacgacc
     9361 aacataaagc tgagcgtatt ggtttagctg catattatca gccttaaatt gacgattttg
     9421 ccaatcatcg gcataaacta catcttgctt attgatcgca tcataagcgt gaggggtcgg
     9481 tctgccggaa agtagcactt tacctccttt cacagttaga tcgccgttta agttcaaacc
     9541 accagagaag gtataaatac tattgagctt ttcttgctct attggtgcgt ttttacgggc
     9601 taatactttg ttgatcgctt gattgcgatc tgcagctaaa aattcccaat gctcgctgct
     9661 taagccaccg cgaggaacag gttgttttgg atcacctttt aatgcaaagt attcccgaat
     9721 tttcgttttc ggattggtga acagataaat atctgcacca gctactagcc ccttacccca
     9781 agttacttca gaggcagttg ccggtggtgt agaggctttt ggatcataca ccacattcaa
     9841 acgaccgtta tgctgggtgt tatctgtttc gccaataaaa ccattaaagc tattgtagcg
     9901 atgctccaga cctttttgcg cgagtacttg ttttactgct gcatccttgt tagaagacag
     9961 gaaggtccaa tgggcattac ttgcgccatt cgttggcata tattggtttg gattgccttt
    10021 gagcgtaaag taatcggtac ggttattagc atgtgggttg atatattcat aaatatcagc
    10081 actgttttct ttccacgttc cccattttaa gtccgttgct tcagggggct tcgggccatt
    10141 aatggtgagt gttgcagctt tttgtaggtg attattaaca atacgcgcac catcatcact
    10201 attttgaata cgattaaacg caatgttgtt gccgttgaga tctaaacgac caccacggaa
    10261 gccaaagtaa atcttatttg gatcgacttg atcagcactg tttaatacaa cggttgaacg
    10321 gccgctcaca ataccaactt ggttaaatgc agattttttg ccattttcac ccgcttgttg
    10381 ggtcaaaatg acagtgcctt gtccaacact aatgtcacca aggttttcgc ctttaccgtt
    10441 aatatgtagt gtcccttcgc ccaatttaga taaacggtca ccttgtgggt ttttgacttg
    10501 ccaattaact tgtttacctt ttgccactac aattccagct cctacccagc tttgatcatt
    10561 ttcagggcga actgttgcat tagcattgaa atttaatgcg ccagcacctt ggtcaatatc
    10621 ggtttttaat acgatagtgc tatcttgtcc ttcaatgttt agggtttttc cggtgttatc
    10681 ttgcggaagt tgtagctgag gtgtgccacc atagcctaat ggagaagcgc tattgtcttt
    10741 aattgaacga tcagcaagcg aaaccgttaa gtttttccct ttattaccaa tgctactgtc
    10801 tttaccctgt gcagaccatt caaaaacggc attttgttgc gcattggtta atgtgccggc
    10861 aatatcttcg gcaaattgtt tatcgtgata atcctgacgg ataataccgg cacggttgta
    10921 gtagttgttt gcaggcgtac caaaggtgta agtagccagt agtagccagc gtttcgtttt
    10981 ctgatcgtag ccatacacac ctgaaccgct atcaccacga gtaccaaatg cagttaatgc
    11041 tccatatggg ctattgttta atgcatttcc tctaaaatct agccagtaat cggaattatg
    11101 taccgcgatt ggtaaatgaa ctcccccggt taaatattgg taagatgttg aaatttggtt
    11161 gtctttatgc tcggtatttt tgactatttg acgaccagag cctaagcgag caaagtgagt
    11221 aaaacgacta ctatcttggt aggctgaagc attattaccc agatcagtca ctgttgcagg
    11281 tgcgacctca gtgactaatt tattgagacg tggcacttga taatcttgat gttgcccacc
    11341 ttcaacaatt ccatagtcgt tacgatcaac gactttgtaa gtgtagtggt gtgcatcggc
    11401 attagtgcct ggggcgccaa attccacagt attgtattgt gtattatggg caacgctgac
    11461 taaatattgc ggtgcaacta gagttgctat ccctaagtta cggtttgcag cactaaaatc
    11521 tggcatcggt acatttggga agagtgcatc taatgtattg ccacttttat ctttaatttc
    11581 aatattgctt gcacctacgg tgaatttacc cttattctcc gcaaaatcac ggtagtattg
    11641 aagatcgata tcatctctga aaacagaggc tgttgcagat aaactaacag caaatgccac
    11701 aaagctggca aggtaagaaa gtggaaagtt tttatttatc ataaaatgtt aataaattgc
    11761 taatattaat ggagtaaaaa ggtggggtat tctatagata attatttatt tggcaagagg
    11821 tcttacctgt tttttataca aatttacaat cttaagatag gcaaaagcag ctacggaata
    11881 cgcagctgct ttgttgaaag ttttattgag tgataagcag gagcattatt ttgcaaattc
    11941 ttgcataaat tcgcccgctt gtttgaccat tgaggttgaa ccgacaaaga acggtacacg
    12001 ctggtgtagc tctgttggct taatatctaa aatcggatta ataccatctg tcgccattcc
    12061 tccggcttgt tcggcaagaa acgcaatcgg gttgcattca tagagtaaac gcaatttccc
    12121 ttttggatat acggtggagg ttgggtaaat ataaataccg ccttttaata aattgcggtg
    12181 gaaatcggac accagcgagc cgatatagcg tgaagagtat ggacgtttga tggcttcatc
    12241 ggtttcttgg caatacttaa taaagcgttt cacaccttgt gggaaagtaa catactgccc
    12301 ttcattgatg gagtaatatt ttccttcggt aggggttttt agatcagggt gtgaaagaat
    12361 aaataagcct aatgacggat cataggtaaa accgttcacg ccattgcctg tggtgtaaac
    12421 cagcatggtt gaagaaccat aagtaacata accggcggca acttgtttac gcccttcctg
    12481 caagaaatct tcttgtgtta ctggggtgcc gataggggag acacggcggt aaatagagaa
    12541 gattgttccc acagaaacat tcacttcaat attggaggag ccatcaagcg gatcggtcat
    12601 taaaatatat tttgcatttc tcccacgctc attatcaaag gcaacaaaat tatcatcttc
    12661 ttccgatgca aagccggcaa catcttcacg tgcaagtaac gcttttttca tcgtttcgtt
    12721 ggcgaataca tcaagtttca tttgggcttc accctgtaca ttttcagaac ctgcagtacc
    12781 taaaatatct tgacttaaac cggcacggtt gatttctcga tgaataattt tagcggctaa
    12841 acgaatagaa gataaaatcc cacttaattc cccttttgcc cctgggtatt ctgcttgttt
    12901 ttcaataata aattcgccga gtgttttcat ttttttctcc ttcgctatgt tagaatgccc
    12961 ttattataac gattaccttt aaagaggtag cggtttaagc tttaattctg tgatccactt
    13021 cacattttat ctttcaagat gaggagcaat acgatgaata atctacgaat caaaatgatc
    13081 agccctgaaa tagcattagc aaaatataat gaattggatg ttttagagat taatcactcc
    13141 aaagtgaagg ctaaaattgc attgcaaggt gcgcagttac tgagttggca acctaaaaat
    13201 actcagcaag atgtattatg gttaagtgaa attgaacctt tccaaacagg tgtggcgatt
    13261 cgtggcggca ttccgatttg ccacccttgg tttggtacag acaaaaagcc tgctcacggc
    13321 acagcccgta ttcaagcgtg gaatttgctg gaacatactt cctcagcaga tgggattcgt
    13381 gttgttttgg ggttagaaaa tcaggcaaaa ctcgagatga tactaggcga agtctgtgag
    13441 ttgtatttta ctcacttagc accggagccg gcacaggctg cattgcatac ttattttcag
    13501 gtcggtgata ttacgaaaac ggaagtacaa ggcttagcaa cacaatgttt tgataaattg
    13561 acaaatcaag aaattgaagt gccatcacct cgcaagataa gtgaaaatgt ggattgtatt
    13621 tatccggcac aagcggtgaa ttttattcaa gattttgcaa atcagcgcac cattaaagtt
    13681 gagcatatta atgctaccga aaccgtactt tggaatcctt ggcataatac cgttagtgcg
    13741 atgacagaaa cggcgtatca aaatatggta tgtgtggaaa cagcacggat aaatacctta
    13801 cttcaacaaa atgaaacgct aggagtgaga attttggtgc gataatgttt aatgagagca
    13861 agcagctgaa ttagtaatat tttttacaaa tttaaccgct tgtctcttgt atttacacta
    13921 gatcaaacag taaaaattcc acgtcatctt gagtgtttat ttcaagtgct ttctcttgac
    13981 gaatgcctaa ggcatcgctg gtggaaagtt caacgccatt gatgtttaga ttccctttca
    14041 ccacttgtag ccagtaactg cggtttggct ctaatgccag ttgctctgat ttggctgttg
    14101 ggtattgata acgccacagc ttcatatctt ggtaaatttt aaatgaacct tcttctgcgt
    14161 ttggcgaaag aatcaaggtt gctccctctt tcggggcaaa tctatcttgg ttgtagcgag
    14221 gggtcacatc tttttggttt gggataatcc aaatctggta aaggtgtaag gtttcattcg
    14281 gatctggatt aatttctgaa tggaaaaccc cggttccggc agacataatt tgaaattcgc
    14341 cagcttttac ttcggtttta ttacccatac tgtcttcgtg agccacacgt ccttttaaca
    14401 tataagttaa aatttccata ttatcgtgcg ggtgcttgcc aaaaccgtga ttaggtgcaa
    14461 tgaaatcttc gttaattacc cgtaaatgtg aaaaatggat atgttttagg tcgtaataat
    14521 tggcaaagga aaaagtgtgg tagcttttaa gccagctaaa agaaccatcg cctcgttcat
    14581 tggcttttct cagttgtaac attatctatt ccttatgtaa gtgttaagtt gtgccatttt
    14641 actttatgtc aaaa
//
LOCUS       DANLZD010000063        14280 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.063, whole genome shotgun sequence.
ACCESSION   DANLZD010000063 DANLZD010000000
VERSION     DANLZD010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14280)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14280)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14280
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.063"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            166..597
                     /locus_tag="PXE26_001361"
     CDS             166..597
                     /locus_tag="PXE26_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3577 domain-containing protein"
                     /protein_id="HDL5593947.1"
                     /translation="MTTQTSTQKNYFNLHTTGIGYLNDIRLVEPKKGNPFYACRIAAL
                     VGESDSPEYRYFDMNVVGKETETLIKRCQKAVSEEKKVLVSFVMADLWFDTFTYSTDS
                     KFHKKGDTGVSVKGRLIRIKMIKIDGEIAYQEKPKSDEQSE"
     gene            615..1607
                     /locus_tag="PXE26_001362"
     CDS             615..1607
                     /locus_tag="PXE26_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005588345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5593948.1"
                     /translation="MLCWALLLDVQDLRVTFKTPDGDVTAVNDLTFSLNAGETLGIVG
                     ESGSGKSQTAFALMGLLADNGRISGSAKFNGQEILNLPETQLNRLRAEQIAMIFQDPM
                     TSLNPYMKIGEQLMEVLMLHKGMDHKTAFEESVRMLDAVKMPESRKRMNMYPHEFSGG
                     MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKSEFNTAIIMITHDLG
                     VVAGICDNVLVMYVGRTMEYGTAEQIFYTPSHPYSIGLIGAVPRVDGQEEELITIPGN
                     PPNLLRLPSGCPFQPRCVHATKQCLKAPALTLLNDQRLRACFVPAEQLIRGNAS"
     gene            1604..2593
                     /gene="oppF"
                     /locus_tag="PXE26_001363"
     CDS             1604..2593
                     /gene="oppF"
                     /locus_tag="PXE26_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000994906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppF"
                     /protein_id="HDL5593949.1"
                     /translation="MNTEKKVILEVKDLSVHFNIKDTKSLFFAKHQTLKAVNHVSFQL
                     YEGETLGVVGESGCGKSTLARAIIGLVESSGGNILWLGKELTQQSAKEWKTIRSDIQM
                     IFQDPLASLNPRMTIGSIIAEPLKIYQPHLTAEEVKEKVRAMMMKVGLLPNLINRYPH
                     EFSGGQCQRIGIARALIVEPKLIICDEPVSALDVSIQAQVVNLLKSLQREMGLSLIFI
                     AHDLAVVKHISDRVLVMYLGNAVELGDYEQVYHDTKHPYTKALMSAVPIPDPQLERNK
                     QIQLLEGDLPSPINPPSGCVFRTRCPLADQHCIADKPLLKGRDNHVVACFKAE"
     gene            complement(2697..3455)
                     /locus_tag="PXE26_001364"
                     /pseudo
     CDS             complement(2697..3455)
                     /locus_tag="PXE26_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326384.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
     gene            complement(3585..4226)
                     /gene="bioD"
                     /locus_tag="PXE26_001365"
     CDS             complement(3585..4226)
                     /gene="bioD"
                     /locus_tag="PXE26_001365"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HDL5593950.1"
                     /translation="MAKVFFITGIDTDIGKTIATGWYAKKLMQQGASVITQKMIQTGC
                     RGIAEDLLIHRKIQGIELTEEDKQGITCPYVFDYPCSPHLAAKLEPRTIERKKIETCT
                     ALLCEKYDYVLLEGAGGLCVPYNEEETTLDYLCQHQYPVILVTSGKLGSINHTLLSLQ
                     VLNSKRVSVHAVIYNLYPETDQVISQETQHFLRRYLEKYSPNTLFEIMDLISV"
     gene            complement(4244..4999)
                     /gene="bioC"
                     /locus_tag="PXE26_001366"
     CDS             complement(4244..4999)
                     /gene="bioC"
                     /locus_tag="PXE26_001366"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HDL5593951.1"
                     /translation="MDRIDKGRIKQRFSAAVSNYDQQARAQQQIHQRLLSLLSYIDRQ
                     AFQRALEIGCGTGGLTKQLMSQLQVEHWELNDLCDMREHLQSVLPQPFHFHCGDAEQL
                     PFPQQYDLIASASVVQWFEDKAGFIARCKVRLKKHGFLLFSTFTPENLTQIKHLTGVG
                     LTYPRLEDWQKWLVPEFEILALEHEEIVLHFDDPLAVLKHLKQTGVTATQQQRWTKGQ
                     LHAFCQQYQQHYRNAQHKVELTYTPMYVLARLT"
     gene            complement(5003..5650)
                     /locus_tag="PXE26_001367"
     CDS             complement(5003..5650)
                     /locus_tag="PXE26_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005758126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HDL5593952.1"
                     /translation="MKTQHISQQGDNLIVYFAGWGTPPSVVEHLILPENYDLCLCYDY
                     RDLHCDVDFSAYQHIRVVAWSMGVWVAERVMQGYPLLSATAINGTGLPCDDQYGIPEA
                     IFAGTLSGLNEDNRTKFERRICGSKTLLRDYQHYSMRPTLQEIHAELTALYTFLQQDH
                     RTDLISWSKAIVGSKDKIFPAQNQRAYWQDRCAITEIAGEHLLFPHFTHWETCWL"
     gene            complement(5647..6810)
                     /gene="bioF"
                     /locus_tag="PXE26_001368"
     CDS             complement(5647..6810)
                     /gene="bioF"
                     /locus_tag="PXE26_001368"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HDL5593953.1"
                     /translation="MIRYYQQQLADLKAQNQFRQLPQLIHRGRFIQREDNTMLNMSSN
                     DYLGLANNEALRQAFFTQYQDQLPALTSSSSRLLTGSFPIYDELESLMAQAFGRETAL
                     LFNSGYHANIGILPALADKKTLIVADKLVHASMIDGIRLAQCEFVRFRHHDYVHLEQI
                     LQKNDRTFERIIVVTESVFSMDGDCADLTQLVALKQRYPQVMLYVDEAHAIGVLGEKG
                     LGLAEQQGCINQIDILVGTFGKALGSMGAYVICDQVIRDYLVNKMRPLIFSTALPPFN
                     VAWTHFVFQQLPHLQAERAHLAQLSQHLRQAIVDIFQVPMPSESCIVPYILGDNELTV
                     RTAQRLQQQGYYCLPIRPPTVPKGTSRIRFSLTADMQVAEVEQFIACLRELAE"
     gene            complement(6807..8108)
                     /locus_tag="PXE26_001369"
     CDS             complement(6807..8108)
                     /locus_tag="PXE26_001369"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HDL5593954.1"
                     /translation="MNEQQLLECDRQHIWHPYAALNADFPLFAVERAEGVYIQLKNGQ
                     QLIDGMSSWWSAIHGYNHPRLNHAATQQLSQMSHVMFGGLTHQPAVELAQQLVNILPE
                     SLDKIFFADSGSVAVEVAMKMAVQYQHAKGETQRYKFATIRSGYHGDTWHAMSVCDPV
                     TGMHSLFAKGLPVQYFLPQPPVKFGQAWQPEAMQPLQDLLAQHGDEIAGLILEPVVQG
                     AGGMYFYSPEYLVQAKALCEPYGILLIFDEIATGFGRTGKLFACEHANVVPDVMCIGK
                     ALTGGYLTLSATITNQAVADVICSGEAKCFMHGPTFMANPLACAVAAESIKLLLASPW
                     QQRIQQIEQQLRQELRQAEALDCVAEMRVLGAIGVIEMKAPVNMASLPPRFVQNGVWV
                     RPFGKLVYLMPPYIISSDQLSQLIHGTIRTLQEEYAHKESL"
     gene            8250..9137
                     /gene="psd"
                     /locus_tag="PXE26_001370"
     CDS             8250..9137
                     /gene="psd"
                     /locus_tag="PXE26_001370"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755522.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDL5593955.1"
                     /translation="MNILEKKAQLSYWQRIKIAFQYVMPQLYLTRLAGWFAKQQWGAV
                     THFVIKLFAKKYHVDMSEAAKPNFSDYASFNEFFIRPLADNARPINQNPTALCLPADG
                     RISQLGHIEQDLLLQAKGHYFSLNDLLAGDEALAHHFKDGEFATTYLSPRDYHRVHMP
                     CDATLCKMIYVPGDLFSVNPFLAEHVPNLFARNERVICVFDTEFGKMVQILVGATITA
                     SMSTVWAGVINPPRPEKITTWTYEGESAVKLLKGQEMGAFQLGSTVINLFEKDRVQLA
                     SHLQVDSPVRMGEILAHQK"
     gene            9162..9716
                     /locus_tag="PXE26_001371"
     CDS             9162..9716
                     /locus_tag="PXE26_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5593956.1"
                     /translation="MSQQFFDQVSLESQLEVSAEAVAKGIFDVLNQNPPALELNEVSH
                     ALQTLQQQAKFKEIEAVGAQFLAENAQKAGVNTTESGLQYEVLVAGEGQIPAREDKVR
                     VHYTGTLIDGTVFDSSVKRGQPAEFPVNGVIAGWIEALSMMPVGSKWRLTIPHNLAYG
                     ERGAGASIPPFSTLVFEVELLAIL"
     gene            complement(9776..10099)
                     /locus_tag="PXE26_001372"
     CDS             complement(9776..10099)
                     /locus_tag="PXE26_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593957.1"
                     /translation="MNWKAVLIFSVLGSLVSCASYSEHAVQRIEAGKSFAVTGNTKRI
                     NTMACQDNDDWYLDGYRVGKSFREHQQKMLIQRTAYCEEQTGKAVPDKFRHSWNSGYQ
                     QGLKR"
     gene            complement(10123..11226)
                     /gene="proB"
                     /locus_tag="PXE26_001373"
     CDS             complement(10123..11226)
                     /gene="proB"
                     /locus_tag="PXE26_001373"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDL5593958.1"
                     /translation="MKIDKTLVVKFGTSTLTQGSAKLNLPHMIDIVRQLAQLHQAGFR
                     LVIVTSGAIAAGRHYLNHPQLPPTIASKQLLAAVGQSQLIQTWEKLFAIYDIHIGQIL
                     LTRADIEDRERFLNARDTLRALLDNQIIPVINENDAVATSEIKVGDNDNLSALVAILV
                     QAEQLYLLTDQQGLFDRDPRKHPDAKLIADVDKITDHIRAIAGGSGTSLGTGGMSTKI
                     SAADVATRSGIETIIAPGNRPNVIVDLAYGQAIGTKFSVQADRLESRKQWLYAAPSAG
                     IITIDAGAENAMLIQHKSLLPAGIVNVEGRFSRGEVVKIRTQQGKDVALGMPRYNSDA
                     LHLIQGKHSQDIEQVLGYEYGAVAVHRDDMIVL"
     gene            11392..12380
                     /locus_tag="PXE26_001374"
                     /pseudo
     CDS             11392..12380
                     /locus_tag="PXE26_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252470.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
     gene            12455..13102
                     /locus_tag="PXE26_001375"
     CDS             12455..13102
                     /locus_tag="PXE26_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3560 domain-containing protein"
                     /protein_id="HDL5593959.1"
                     /translation="MTINTYAKFAPTVFVAKCSESHTKGEIITLTSKYGNETEVQVHN
                     LVKQDGEHYFYSFTRCDGMDSQSFAQQKAERYQGYADNAAKRSQDWVNAANEGCDFLS
                     LGEPIKIGHHSEKRHRNLIERNARRMDNAVAEMNKAASYESRIAYWEKMAGKIDLSMP
                     ESLEYFKFELDKAKTKHKELKDNPEKREHGYSLTYAKKAVNELEKKVKLAELLWA"
     gene            13126..13533
                     /locus_tag="PXE26_001376"
     CDS             13126..13533
                     /locus_tag="PXE26_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein"
                     /protein_id="HDL5593960.1"
                     /translation="MNRQGIYINGKQVFDSQGEDIQSIGFFGCNIQTVVGINKGSILV
                     SSNSNQLLVNGQSIELGSEPVLKIEVLGNVQKLSAGAADVSITGDAGSVDTVSGDVSI
                     KGNVASYVKTVSGDVRCRAITGSVETVSGDIYR"
     gene            13631..13981
                     /locus_tag="PXE26_001377"
     CDS             13631..13981
                     /locus_tag="PXE26_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593961.1"
                     /translation="MTTINLSQQERELVEFVWNNRNTPWFFHCSVSNVSRNNTSRQIA
                     VCVIKDNQLISLDELIAKLCGYKLRQNGLYVTVHNMDAVFDTLYRFMCKLNDEMEANE
                     NVCPYLSLAHYEVF"
BASE COUNT         4115 a         3117 c         2962 g         4086 t
ORIGIN      
        1 agcattctga aagggaacgc cacttttgtg ggaatgccac ctaaaccctc taccatctca
       61 gtgaagcatc attgagattt cattttactt ccacctcgcg gggaacattt ttcccgtgtt
      121 gggcaaggat gtttctccgc ttttttacat ttggagaaac aaactatgac aactcaaact
      181 tctactcaaa aaaattactt caaccttcat acaacaggca ttggctatct aaacgatatt
      241 cgtttggtag agcctaaaaa aggaaatcct ttttatgcct gccgtatagc agctctggtt
      301 ggcgaatctg actctcctga gtacagatat tttgatatga atgtagtcgg taaagagact
      361 gaaacactta tcaaaagatg ccaaaaagca gttagtgaag agaaaaaagt gcttgtgtca
      421 tttgtaatgg ctgatttgtg gttcgataca tttacttact caacagatag taaattccac
      481 aaaaaaggcg ataccggtgt atctgtaaaa ggtcgcttaa tccgcatcaa aatgattaaa
      541 attgatgggg aaatagccta ccaagaaaag ccaaaatcag atgagcaatc tgagtaattt
      601 tacctaagcc cgacatttta tgttgggctt tattactcga tgtacaagat ttgcgcgtaa
      661 cttttaagac cccagatggc gatgttactg ccgtcaatga tctgactttt tctttaaatg
      721 ccggtgaaac cctcggcatt gtcggcgaat ctggctcagg aaaatcgcaa accgcttttg
      781 ctctaatggg gctattagca gataacgggc gaatttcagg atcagcaaaa tttaatggac
      841 aagaaattct caacttgcct gaaacacaac ttaaccgctt gcgtgctgaa caaattgcga
      901 tgatcttcca agatccaatg acctcgctga acccttatat gaaaatcggc gaacagctaa
      961 tggaagtact gatgttgcat aaaggcatgg atcataaaac tgcgtttgaa gaatcggtac
     1021 ggatgttaga tgcggtgaaa atgccggagt cacgtaaacg tatgaatatg tatccgcatg
     1081 aattttccgg cggtatgcgt cagcgtgtga tgattgcgat ggcattactt tgccgtccga
     1141 aactcctcat tgcggatgaa cccacaactg cgctcgatgt gacggtgcaa gctcaaatca
     1201 tgaccttatt aaacgaatta aaaagcgagt ttaataccgc cattatcatg attactcacg
     1261 atctcggtgt ggtcgcagga atttgcgata atgtgttggt gatgtatgta ggcagaacca
     1321 tggaatacgg caccgctgag caaattttct ataccccaag ccacccttat tctatcggct
     1381 taattggtgc agtgcctcgc gttgacggac aggaagaaga actcattact attccgggta
     1441 atccacctaa cttattacgc ttaccgagtg gctgtccttt ccaaccacgt tgcgttcatg
     1501 caactaaaca gtgcctcaaa gcaccggcgt taaccttgtt aaatgatcaa cgtttacgcg
     1561 cttgttttgt ccctgccgag caattaatcc gaggtaacgc atcatgaaca cagagaaaaa
     1621 agtgatccta gaagtgaagg atttaagcgt tcatttcaac atcaaagata cgaaatcttt
     1681 attctttgct aaacaccaaa ctttaaaggc cgtcaatcat gtctcttttc agttatacga
     1741 aggcgaaacc ttaggtgtgg tcggtgaatc gggctgtgga aaatcaactc tcgcacgcgc
     1801 gattattggc ttagtggaaa gctctggcgg taatatttta tggctaggta aggagttaac
     1861 tcaacaaagt gcgaaagaat ggaaaacgat ccgtagcgat attcaaatga ttttccaaga
     1921 tcctttagcc tccctgaatc cacggatgac cattggcagt atcattgccg aaccattaaa
     1981 aatttaccaa ccccatttaa ccgcggaaga agtgaaagaa aaagtacgcg cgatgatgat
     2041 gaaagtgggc ttattaccta acttaatcaa tcgctatcca catgaatttt cgggtggaca
     2101 atgtcagcgt atcgggattg cgcgcgcctt gattgtggaa ccaaaactca ttatttgcga
     2161 tgagccagtg tccgccttag atgtttcaat ccaagcacaa gtagtgaatt tattgaaatc
     2221 tttacaacgc gaaatggggc tatcattgat tttcattgca cacgaccttg ctgtggtgaa
     2281 acacatttcc gatcgtgttt tggtcatgta tcttggtaac gcggtggaat taggtgacta
     2341 tgaacaagtc tatcacgata ctaagcatcc ttataccaaa gctttgatgt ctgcggtacc
     2401 gattcctgat ccgcaattag aacgcaataa acaaattcaa ttgcttgaag gcgatctccc
     2461 ttccccgatt aatccgccgt cgggctgtgt gttccgcacc cgttgcccac tggcagatca
     2521 acactgtatt gcagacaaac cgctcctcaa aggacgagat aatcacgttg ttgcttgttt
     2581 taaagccgag taatacacac aaccgcacaa aaaagtgcgg ttgttttttt gcgaatattc
     2641 acagtcagac tttcgtgata ctttcgctct gagataagga ttacgataca gagaagttat
     2701 tcaacaatca cacgtgcatt gatcggttgc actggacgat tattgtgtcc tttcatcaag
     2761 gtcgcaaacg cctcaacttg agattggcta atgttgtcat agtgttttaa cactaaccaa
     2821 tttacacctt cagaacaagg tggtgtagtt aatgacccgc tgaaacgata gtaatcgcgt
     2881 tttttcggaa ttaatgttgc tgggtcaaaa gcggtactaa gcgtatattt ctcccctgct
     2941 ttttgcggga agttttgcca aattggggct aaccattggt tttcacttga taatacatag
     3001 agcacgccaa gcacagcaag attcccttca ttgtctgcgt gtacaaaatg tgcttccatc
     3061 gggaaggatt tacctcaaat taagttttca ctcggcacat ggaaatggaa ttgtttaagg
     3121 gtaaaagtct ttccattaag ctgcatgcga ttacttgcct ctttgaaatc cacttgaata
     3181 gtatgcccat tattgacaat ctccacattg gaaggtcgat aatccagctt aatcggcgct
     3241 aacttaccat caatcgtatg cttgatatct attggtgttt ggtttttacc ttcgccacaa
     3301 atacggaatt tgggtgaaag ttcagcccaa tgttctggcg attcgtgtcc ggtgtatccc
     3361 caatgcgtgt gcgtttcttc tttcttaagg gggcttgtac acgctgtcaa tgctaatgca
     3421 cctaacgtaa gcacaaaaag gtttgatttt ttcatagcct agctcctgat taaaagagat
     3481 gaattgatga gacaacctaa actcaatgat gccttaatcc gagacgcttt catcttaggc
     3541 aaaacaacac tccatttcaa gtataacttg ctcaagaata tatcttagac cgaaatcaaa
     3601 tccattattt caaataaggt attaggcgag tatttctcta aataacgacg taaaaaatgt
     3661 tgtgtttctt ggctaatgac ttgatctgtt tccggataca agttgtatat cacagcatgc
     3721 acacttactc ttttggagtt gagtacttgt aaactcaata aggtatgatt aatactacct
     3781 agcttgccag aggtaactaa aatcacgggg tattgatgct gacaaagata atcaagggtg
     3841 gtttcttcct cattataagg tacacacaag ccgcccgccc cttccaataa tacataatca
     3901 tatttttcac acaaaagtgc ggtgcaggtt tcaatttttt tacgttcgat cgtgcgcggt
     3961 tctaatttcg cggctaaatg cggtgagcaa ggataatcaa acacgtaagg acaagtgata
     4021 ccttgcttat cttcttctgt aagctcaata ccttgtattt ttcggtgtat gagtaaatct
     4081 tcggcaattc ctcggcagcc tgtttggatc atcttttgcg tgatgacact tgcgccttgt
     4141 tgcatcagtt tcttggcgta ccaacctgtg gcgatggttt tgccaatatc ggtgtcgatg
     4201 ccagtgataa aaaaaacctt tgccatactt tttccttcta agattaagtt aaacgcgcca
     4261 gcacatacat cggcgtgtaa gtgagttcta ctttgtgttg tgcgttacgg taatgttgtt
     4321 gatattgttg gcaaaaggcg tgcaattgcc cttttgtcca cctttgctgc tgtgtggcag
     4381 taacgcctgt ttgtttcaaa tgttttaaca ccgctaaggg atcatcaaag tgcaacacaa
     4441 tctcctcgtg ttcgagggct aaaatctcaa attcaggcac tagccacttt tgccagtcct
     4501 caagacgtgg ataagttaac cccacaccgg tgaggtgttt gatctgtgtt aaattctcgg
     4561 gcgtgaaagt actgaataac aaaaatccgt gcttttttaa gcgcacttta caacgcgcaa
     4621 taaaacccgc tttatcttca aaccattgca ccacggaagc actggcaatc aaatcatact
     4681 gctgcggaaa gggaagttgt tccgcatcgc cacaatggaa gtgaaaaggt tggggcaaca
     4741 ctgattgcag atgctctcgc atatcgcaaa ggtcattcag ctcccagtgt tcaacctgca
     4801 actgtgacat taattgcttc gttaatccac cagtaccaca tccaatctct aatgcacgtt
     4861 ggaatgcttg tctgtcgata tacgacaata aactaagcaa acgttggtga atctgctgtt
     4921 gtgctctcgc ttgctgatca tagttcgata cagcggcaga aaaacgctgt ttaatgcgtc
     4981 ctttatcaat acgatccatg tgctacaacc aacaagtttc ccaatgggtg aagtgaggaa
     5041 acaacaaatg ctcccctgcg atttctgtta ttgcacaacg atcctgccaa taagcccgct
     5101 gattttgtgc agggaaaatt ttatcttttg agccgacaat cgccttgctc cacgagatta
     5161 aatctgtacg gtgatcttgt tgtaaaaagg tataaagtgc ggtcagttca gcatgaattt
     5221 cctgtaatgt gggacgcatg gaatagtgct gataatctct taacagcgtt tttgaaccac
     5281 aaatacgacg ttcaaattta gtccgattat cttcatttaa accagataac gtgccagcaa
     5341 aaatggcttc gggaatacca tattggtcat cacaaggtaa gcccgtgcca ttgatcgccg
     5401 tagcagatag cagtggataa ccttgcatca cacgctccgc tacccacacg cccattgacc
     5461 atgccaccac gcgaatatgt tgataagcgg aaaaatcaac atcgcaatgc agatctcgat
     5521 aatcatagca aaggcataaa tcataatttt ccggcagaat caggtgctcg accacgctcg
     5581 gcggtgtgcc ccaccctgca aaatagacga tcagattgtc gccttgctgt gaaatatgtt
     5641 gtgttttcat tcagcaagct cccgtaaaca agcaataaat tgttccactt ccgccacttg
     5701 catatctgca gtcagtgaaa aacgaatacg agaggttcct tttgggactg tcggcgggcg
     5761 aatcggtaag caataatagc cttgttgttg caaacgttgc gccgttctta ctgtcagttc
     5821 gttatcgccc aaaatataag gtacgataca actttcactt ggcatcggga cttgaaaaat
     5881 gtcaacaatc gcttggcgta aatgttgact aagctgagca agatgtgcgc gttcggcttg
     5941 caaatgtggt aattgttgaa agacaaaatg cgtccatgcc acattaaacg gcggaagtgc
     6001 cgtggaaaaa atcaatgggc gcattttatt aaccaaataa tctcggatca cttgatcgca
     6061 aatcacataa gcccccatag agcccaacgc cttgccaaac gtaccgacta aaatatcaat
     6121 ttggttgata cagccttgtt gttctgctaa ccctagcccc ttctccccca atacgcctat
     6181 cgcatgggct tcatctacat ataacatcac ttgcggatag cgctgtttta atgcgaccaa
     6241 ctgggtgagg tctgcacagt caccatccat actaaacacg gattccgtga ccacgataat
     6301 ccgctcaaaa gtgcgatcat ttttttgcaa aatttgttca aggtggacgt aatcatgatg
     6361 acgaaaacgc acaaactcac attgtgccaa gcgaatgcca tcaatcatac tggcatgtac
     6421 cagtttatcc gccacaatca gcgttttttt gtccgctaaa gcaggcaaaa tcccaatatt
     6481 agcatgataa ccgctattaa atagcaaggc agtttctcgt ccaaatgcct gcgccattaa
     6541 gctttctagc tcatcataaa tcggaaaaga gcctgttaat aaacgggagg aagaagaagt
     6601 caatgcaggg agttgatctt ggtattgcgt gaaaaatgcc tgacgcaagg cttcgttatt
     6661 ggctaaacct aaataatcat tggaggacat attcagcatc gtattgtcct cacgttgaat
     6721 aaaacgccct cggtgaatta gttggggcag ttggcgaaat tgattctgcg cctttaaatc
     6781 agctaactgc tgctgataat acctgatcat agagattcct tatgtgcata ttcttcttga
     6841 agggtgcgaa ttgtgccatg aattaattga gacaattgat ccgatgagat gatatacggt
     6901 ggcatcaaat acactaattt gccaaatgga cgcacccaaa cgccattttg cacaaagcgt
     6961 ggtggtaaac ttgccatatt gacaggcgcc ttcatttcaa tcaccccaat cgctccaagt
     7021 actctcattt cagcgacaca atctaaggct tccgcttggc gcaattcttg acgtaattgc
     7081 tgttcaatct gttgaatacg ttgttgccaa gggcttgcca ataacaattt gatactttct
     7141 gctgctaccg cacacgccag tggatttgcc ataaacgtcg gaccgtgcat aaaacatttt
     7201 gcctcgccag aacaaatcac gtctgctacc gcttggttgg taatggtagc ggatagagtt
     7261 aaataccccc ccgttaaagc tttaccgata cacatcacat ccggcacgac attggcatgt
     7321 tcacaagcaa ataatttgcc tgtacgccca aatcctgtgg caatttcatc aaaaatcagc
     7381 aaaatgccgt acggttcgca taaggctttt gcttgcacca aatactcagg ggaataaaaa
     7441 tacataccac ccgccccttg cactaccggt tctaaaatta aacccgcaat ctcatcacca
     7501 tgttgtgcca ataaatcctg taacggttgc atcgcttcgg gttgccaagc ttgcccaaat
     7561 tttaccgggg gttgcggtaa aaaatattgc acgggtagcc ctttggcaaa caagctgtgc
     7621 atgccggtca cgggatcaca cacggacatc gcatgccaag tatcaccatg atagcccgaa
     7681 cgaatcgtag caaatttata gcgctgtgtt tcgcctttag catgttgata ttgcactgcc
     7741 attttcatcg ccacttccac ggcgaccgaa ccactatcgg caaagaaaat tttatccaaa
     7801 ctttccggca agatgttgac cagttgctgc gccagttcta ccgctggttg gtgcgttaat
     7861 ccaccaaaca tcacatgact catttgactc agttgttgcg tggcagcgtg gtttaaacgg
     7921 gggtgattat agccatgaat cgctgaccac cacgatgaca tgccatcaat caactgctga
     7981 ccgtttttta actggatata cacaccttcg gcacgttcta ctgcaaataa gggaaaatcc
     8041 gcatttaacg ccgcataagg gtgccaaata tgttgtcgat cacattctaa aagttgctgc
     8101 tcattcatcg tttcacctcg gttgtgaatc gccctttcaa ctggcgtaaa ttcacgcaaa
     8161 tacttacata aacggaataa cttgttataa tcgccaagca tttggctttt caagcccatt
     8221 attctaactt aaaaagatga tttattacta tgaatatatt agaaaaaaaa gcacaactga
     8281 gttactggca acggattaaa attgcctttc aatatgtgat gccacaactt tatttaacac
     8341 gtcttgcagg ctggtttgca aaacagcaat ggggtgctgt cacacatttt gtgattaaat
     8401 tattcgcgaa aaaataccat gtggatatga gtgaagctgc aaaaccaaat ttcagcgact
     8461 atgcgagctt taatgaattt tttatccgtc cattagcgga caatgcccgt ccaattaatc
     8521 aaaatcctac cgcactttgt ttaccggcag atggtcgtat tagtcagtta ggacacattg
     8581 agcaggattt attgctacaa gccaaaggac attatttcag cttgaacgat ttgttagctg
     8641 gcgacgaggc gctcgctcat cattttaaag atggcgaatt tgccaccacc tacctctcac
     8701 cacgcgatta ccaccgtgtg catatgcctt gtgatgccac cttatgcaaa atgatttatg
     8761 tgccaggtga cttattctca gtcaatccat ttttagccga acacgtgcca aacttatttg
     8821 cacgtaatga acgcgtgatc tgcgtattcg ataccgaatt tggtaaaatg gtccaaattt
     8881 tagtcggcgc aaccattacc gcgagtatga gcaccgtgtg ggcaggtgtg atcaacccgc
     8941 ctcgtccaga aaaaatcacc acctggacct atgaaggaga aagtgcggtc aaattactga
     9001 aaggacaaga aatgggagcc tttcaattgg gctcgacggt gatcaattta tttgaaaaag
     9061 atcgtgtgca actggcatct catttacaag tggatagccc ggtacgtatg ggtgaaattc
     9121 ttgcccacca aaaataattt ttaaccacaa taggaaaaac aatgagtcaa caatttttcg
     9181 accaagtgtc attagaaagc caacttgaag tgagcgccga agccgtcgcg aaagggatct
     9241 ttgatgtgtt aaatcaaaat ccaccagcac ttgagttaaa tgaagtgagt catgccctac
     9301 agactttgca acaacaagcg aaattcaaag aaattgaagc cgttggtgca caattcttag
     9361 ctgaaaacgc gcaaaaagcg ggggtaaata ctacggaatc tggtttacag tatgaagtgt
     9421 tagtggctgg tgaagggcaa attccggcac gcgaagacaa agtgcgtgtg cattacactg
     9481 ggacattaat cgacggtacc gtctttgaca gctcagtaaa acgtggtcaa cctgcagaat
     9541 tcccagtaaa tggcgtgatc gctggttgga ttgaagcctt gtccatgatg ccagtgggtt
     9601 caaaatggcg tttaaccatt cctcacaacc tcgcttatgg cgaacgtggt gctggtgcct
     9661 ccattccgcc attcagtacc ttagtgtttg aagtcgaatt attagccatt ctttaaagct
     9721 aaacgctaga cataaaaaag tgcggtcatt ttccgcactt ttttatgtct agcgtttatc
     9781 gtttcaagcc ttgctgatag ccgctgttcc acgaatggcg gaacttgtcc ggcacagcct
     9841 tgcccgtttg ttcttcacag taagccgttc gttgaatcaa cattttttgt tggtgttctc
     9901 gaaatgattt tcccacacga tagccgtcca aataccaatc atcattatct tgacatgcca
     9961 tggtattaat ccgttttgta ttccccgtca ctgcaaaaga tttgcctgcc tcaatacgtt
    10021 gcaccgcatg ttcagagtat gaagcacagc tcaccagcga acctagtaca ctgaatatca
    10081 atactgcttt ccaattcatc ttgttacctt tctttttctg atttataaca caatcatatc
    10141 gtctcggtgt accgcaaccg ccccatattc ataaccgaga acctgttcga tatcttgcga
    10201 atgtttgcct tgaattaaat ggagcgcatc gctgttataa cgtggcatcc ctaaggcaac
    10261 atccttgcct tgctgagtac gaatttttac cacttcaccg cgtgaaaagc gcccttccac
    10321 gtttacaatc ccagcaggca ataacgattt atgttgtatt aacatcgcgt tttccgcccc
    10381 cgcatcaatg gtaataatac cggctgacgg cgccgcatat agccattgtt tacgactttc
    10441 taagcgatct gcttgcacac taaatttggt gccaatggct tgcccataag ctaagtccac
    10501 aatcacattc gggcgattac ccggtgcaat aatggtttca atgccggagc gggttgccac
    10561 atccgcggca ctgattttgg tggacatgcc acctgtgcct aacgaggtgc cacttccgcc
    10621 cgcaatcgcg cgaatatgat cggtaatttt gtccacgtcg gcgatcaatt tggcgtctgg
    10681 atgtttgcgc ggatcacgat caaataaacc ttgctgatca gtaagcaaat acaactgttc
    10741 tgcttgcacc aaaattgcca ctaacgcgga taaattatcg ttatcgccta ctttaatttc
    10801 tgacgtagcg acagcgtcat tttcattaat cactggaata atctgattgt ctaataaggc
    10861 gcgcaaagta tctctggcat ttaaaaaacg ttcacgatct tcaatgtcgg cacgggtcaa
    10921 taaaatctgc ccaatatgaa tatcataaat ggcaaacaat ttttcccacg tttgaatgag
    10981 ctgactttgt cctaccgcag ccaataattg tttcgaggca atcgtcggtg gcaattgcgg
    11041 gtgatttaaa taatgacgac ctgccgcaat cgcccctgag gtaacaatca ctaaacgaaa
    11101 gcccgcttga tgaagctgtg cgagctgacg cacaatatct atcatatgag gtaaatttaa
    11161 cttcgccgat ccttgcgtaa gcgtactggt tccaaatttt acaacgagtg ttttgtcgat
    11221 tttcatcttc tctatcttct tatttttgtc gcacaaaatt gaagctaact taccattaat
    11281 catcagaaaa atcatctcgt ttacttgcta ttttctatga tttagcacaa attttttctc
    11341 actaaaaggc atataataaa gcttcttgat ttttcagcta ggaacccgat tatgacctca
    11401 acctcttcac aagaaacgga gcggcaacga gaaatcactc gcctttgtgt tcaagttgcc
    11461 caactcttat acaacatggt gcagaaagtg ccatcgttgt gcaaatggca catcgcttag
    11521 gcttagccct cggtgtagat agcgtagaat gtgccctcac gccaaatgcc attattctta
    11581 ctacattagc ccaagaccat tgcatcacga cagtccgtaa aaaccaagac aaaggaatta
    11641 atatgcaagt ggttaccgaa gtgcaacgta ttgtgattac agcagaacgt aaaatctatg
    11701 atatgcaaca agtgcatgcc aaactggctc gcattaaacc gcttaaatac aatcgctatt
    11761 ttgtgatgtt gatgattggc gtatcctgtg ccagttttgc tcatttatct ggtggggacg
    11821 cactagtttc attggttaca tttctcgccg caacactcgc catgtatgtt cgccaatcac
    11881 ttgccgcaag acactataac cccttaattg tatttgcggt gaccgccttt gtcgcctcac
    11941 taattgcggg tatcgcgttg aaatataaca tcggcaatca gccccaaatt gccttggcat
    12001 ccagcgtatt attgctcgtt cccggctttc cactgattaa tgcactcgcc gatattttaa
    12061 aagggcatat caatatgggg attgcccgtt gggcactcgc gacaatcctc acatttgggg
    12121 catgcttagg cattgtattt gcgctgagtt tattcttaga ggaaatctgt atgctaaata
    12181 aattcattca agatgaattt ctacggctag atcaacgtta tgcagcttgg tatcaaagtg
    12241 aagaaacgga tgaagttgcc agaatgggga ttcaagaaag tgagcggatt ttgaaaattc
    12301 tgtatgcact gaaatataac gaagacccta tgcaaaatgg tttaggctat attgcattta
    12361 tggcatcaaa aggccaataa tttacttatc tcaacaattt acccaccggg gaaactcctc
    12421 gatggcgttt cccctacttt ataggagaaa cgctatgact attaacactt atgcaaaatt
    12481 tgcacctacc gtttttgttg caaaatgctc tgaatcacat accaaaggtg aaattattac
    12541 gctaaccagc aaatatggta atgaaaccga ggttcaagta cataatcttg ttaaacaaga
    12601 tggcgagcat tatttttatt catttactcg ttgtgatggg atggatagtc agtcatttgc
    12661 tcaacaaaaa gcagaacgct atcaaggcta tgcagataat gcagccaaac gtagtcaaga
    12721 ttgggtaaat gccgctaatg aggggtgtga ttttttgagt ttaggtgagc caataaaaat
    12781 tggtcatcac agcgaaaaga gacaccgtaa ccttattgaa cgtaatgctc gccgtatgga
    12841 caatgcggtt gcagaaatga acaaagctgc aagttatgaa tctcgtatcg catattggga
    12901 aaaaatggca ggaaaaattg acctgtctat gccggaaagt ctggaatact ttaagtttga
    12961 attggataaa gccaaaacaa agcacaaaga attgaaggac aaccccgaga aacgagagca
    13021 tggttattca ctgacttatg ctaaaaaagc agttaatgaa cttgagaaaa aagtaaaatt
    13081 agctgaatta ctttgggcat aattatttac aaaggagatg acgatatgaa tcgacaaggt
    13141 atttatatta atggcaaaca ggtgtttgat tcacaaggcg aagatattca aagcattgga
    13201 ttttttggct gcaatattca aacggtcgta ggcataaaca aaggaagtat tttagtctcg
    13261 tccaatagta atcaattatt ggtgaatgga cagtcgattg aattaggttc tgagccagtc
    13321 ctcaaaattg aggttttggg caatgtgcag aaactgagtg ccggtgccgc agatgtctct
    13381 attacaggag atgccggcag tgttgacaca gttagcggtg atgtctctat taagggaaat
    13441 gttgcctctt atgtgaaaac cgtgagtggt gatgttcgct gtcgtgctat taccggttcg
    13501 gtggaaaccg tctccggtga tatttatcgc tgatatttac tcatcttatt atttaccacc
    13561 ctattgggaa gcaattttcc caaggtgggc agattgtttc ccatttttat tttgaatttg
    13621 gagaaacatg atgaccacta ttaacctttc acaacaagaa cgtgagttag ttgaatttgt
    13681 ctggaataac cgtaatacac cttggttttt tcactgtagt gtatcgaatg tgtcgagaaa
    13741 taatacctct cggcaaattg ctgtatgtgt cattaaggat aatcaattga ttagccttga
    13801 tgaattgata gcaaaattat gtggttataa actcagacaa aacggattat acgttactgt
    13861 tcataatatg gatgctgttt ttgatacctt atatcgcttt atgtgcaagc taaatgatga
    13921 gatggaggca aatgaaaatg tttgccctta tttatcatta gctcactatg aagtgttttg
    13981 attggtatca gaactatcca ccctgtcggg aaacaatttt tccgataggg cagattgttt
    14041 cccactttta ttttgaattt ggagaaacat aatgatagac accttttttg accttgacga
    14101 cacctcatgc tatttaggta actgggagga tatactgaaa gaatatgatg attgtctttc
    14161 agttgaagat ttttggcatt ccgctaaaga atttgatacc gtacctcatt ttggcaacct
    14221 ataccaggag cgtgtcatcc ttaagttgat tgctcgattc tgtattgagc tgaatattga
//
LOCUS       DANLZD010000064        14168 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.064, whole genome shotgun sequence.
ACCESSION   DANLZD010000064 DANLZD010000000
VERSION     DANLZD010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14168)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14168)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14168
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.064"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            92..1069
                     /locus_tag="PXE26_001378"
     CDS             92..1069
                     /locus_tag="PXE26_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDL5593962.1"
                     /translation="MSRNLFQKRLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQ
                     DYRTTINDHERHVLTRAMLAISQVEVNVKRFWGELYCYFPKPEMDDVGGTFAESEVRH
                     KDAYSFLLEKLGLNEMFSQIHEIEPLMNRIRYMESFMKDKDAGKGEFVLSLVLFSLFV
                     EHISLFGQFIIMMSFNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELF
                     TPEFFEDLQTLANQAFEAERGILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLE
                     PPHDIDPELLKETEWFDIEILSTKETDFFNKRSTDYSKKMKQITADDLF"
     gene            1056..2723
                     /locus_tag="PXE26_001379"
     CDS             1056..2723
                     /locus_tag="PXE26_001379"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDL5593963.1"
                     /translation="MTYFNTDRPDFHWLNEDSRLFLQRGYLLEGTTALDRIRFIAEHA
                     ERKLGIEGYADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTT
                     AEVGMMSKIGGGTSAYFGDIRPRGSLIKNNGKSDGSFNFSKLFDTVIDVISQGTSRKG
                     QFAGYIDIEHGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESMKAGDPYKRQLWAKLL
                     QRKTETGIPYLFFKDNANAGRPDVYKDKNMTIHASNLCTEIMLPSSNEESFVCCLSSM
                     NLLYFDEWKDTDAPETLTYFLDVVMSEFIEKSQSIPFLDRANRFARRHRALGLGVLGW
                     HSYLQANNIAFDSFQAMQKNNEIFKTLQAKTLKASQELAQRFGEPEILEGYGRRNTTL
                     MSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQEKGLDTEEI
                     WTSILQNDGSVQHLEQLSEHEKEVFKTFAEISQLSVIQQAAQRQKYIDQGQSINVMIH
                     PATPARDLNQLYLTAEELGLKSIYYQNSMSAAQVFNRNLLSCSSCEG"
     gene            2727..3146
                     /locus_tag="PXE26_001380"
     CDS             2727..3146
                     /locus_tag="PXE26_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593964.1"
                     /translation="MGNLSHTSPNTIVEVVGEFPEITSSGYTFDKGPIQLRIGKHTAP
                     NKGFGVKHIEAEHMQEILNLGFTSVNEFVKAIIVENAKIFCEFSDLKGNHRPIILKAS
                     IGIVVLERKFLESGTIYSVVTAYRRTNPHGIQIGTMK"
     gene            complement(3381..4142)
                     /gene="nudC"
                     /locus_tag="PXE26_001381"
     CDS             complement(3381..4142)
                     /gene="nudC"
                     /locus_tag="PXE26_001381"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HDL5593965.1"
                     /translation="MNKGYWIIVSDFDIALEAGEIPFGSAEELGLSGREKLTIGQYQG
                     SPAYLVKALESDNQREFAYLRSQINRPPELSHLLHRAVSLNHFFQTHQFCGKCGEKTI
                     LASDEIAIYCNACGNRAYPTISPSIIVAVRKGRQILLANHLRHKGTIYTTLAGFVEAG
                     EAVETAVHREVFEETGIKVKNVRYFGSQPWAFPNSLMLGFLADYESGEIQLQEEEICD
                     AKWFDCEESLPEIPQQGTIAFELIQATLKLCRESK"
     gene            complement(4135..4818)
                     /locus_tag="PXE26_001382"
     CDS             complement(4135..4818)
                     /locus_tag="PXE26_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HDL5593966.1"
                     /translation="MKQPTFKRMTNKRSNFAKNLQKNPQKRPLTFAETTLVLLNKPYD
                     VLTQFTDEQGRKTLKDFITMPNIYPVGRLDRDSEGLLLLTNNGEIQHRLAHPKFDKQK
                     TYWVQVEGVPQPEDLAKLAKGVELKDGLTKPAKVRAIATPDFAWNIAPQIRERKTIPT
                     SWIELIISEGKNRQVRRMTAHIGFPTLRLIRVGIGQFRLGNLGCGEFQVLSENEKRKL
                     FTQLGLKDE"
     gene            complement(4815..5663)
                     /locus_tag="PXE26_001383"
     CDS             complement(4815..5663)
                     /locus_tag="PXE26_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5593967.1"
                     /translation="MEKRTLALLKVHGTAVLFGASGIFGALIQSSAETIVLGRVMIAF
                     AIISLYFLWKKQPLVKLNLQQMAQLAFSAALLAAHWVTFFVAVKVGGVAVATLGFASF
                     PAFVALFESLFFREKLRFREVVLLIAITVGLILVTPEFTFGNQATQGLLWGVLSALVY
                     GILAVANRRTMSKISGVQASWWQYIFATLFLLPLSITEFPSVSTQDWFWIFCIGFLCT
                     TLAYTLFISSLDTINARTASMIISLEPVYAIVIAWLCFNEVPTLKMIIGGLIILLSVA
                     WANLKK"
     gene            complement(5663..6148)
                     /locus_tag="PXE26_001384"
     CDS             complement(5663..6148)
                     /locus_tag="PXE26_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HDL5593968.1"
                     /translation="MPILAILFGIFFYIYCEISLLVNIGSIIGVLPTILLLVVISFLG
                     LWIVKLRGVYTLFSIKQDLSQGKIPTEAVGNSVMFIVAGILLIIPGFLSDILAILCVL
                     PFSRKWIQAFVINSVKNKVFMHFTAQTSSFSVTSAQDSNTFDAEFERKPDEQDQHNRI
                     K"
     gene            complement(6150..7472)
                     /gene="pepQ"
                     /locus_tag="PXE26_001385"
     CDS             complement(6150..7472)
                     /gene="pepQ"
                     /locus_tag="PXE26_001385"
                     /EC_number="3.4.13.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidase"
                     /protein_id="HDL5593969.1"
                     /translation="MKNLFSTHLARLQQTVQSLLENAFLDGLWIYAGKAKTLFLDDQT
                     APFKINPYFNYFFPYPQAENCWLFLDGKNKPKIYFYAPEDYWVSTLKVPTEAFFAAEF
                     EWVLLRAENEIATFIQNPTACAFIGEDVELAKKLGFSHINPQKVLNSLNFARSIKTEF
                     EIESIYQAQFSALKGHQVAKEAFFAGKSEFEINLEYLKATQQSDLNVPYGNIVAINQN
                     GAVLHYTALDFDTHAKRHSFLIDAGTTVNGYASDLTRTYAFDSGSEFAELVAKMEQLK
                     LQIIAELSIGVNYLHYHTRMQQMISQLLAEHQFIHLSAEQIFEQGISRTFFPHGLGHL
                     LGIQVHDVGGFQQNARGSHKAPPEVYPSLRCTRELQENMVLTIEPGFYFIEMLLKPWK
                     NSALSSAFNWQKIEAFKAFGGIRTEDNIVMRANGAENLTANAAATLGG"
     gene            7483..7725
                     /gene="tusA"
                     /locus_tag="PXE26_001386"
     CDS             7483..7725
                     /gene="tusA"
                     /locus_tag="PXE26_001386"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA"
                     /protein_id="HDL5593970.1"
                     /translation="MTQLTVNKELDTLGLRCPEPVMLTRKTIRNMEEGEILHIIADDP
                     ATTRDIPSFCEFMDHQLIQKEVDSTPYHYWIKKGLE"
     gene            complement(7792..8223)
                     /gene="rraB"
                     /locus_tag="PXE26_001387"
     CDS             complement(7792..8223)
                     /gene="rraB"
                     /locus_tag="PXE26_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HDL5593971.1"
                     /translation="MYNLDELRTETDETISSLLADGSDPEALYIIEHHVAHHDFDKLE
                     KLVVDAYKLGYEISEAEEVEDENGKVIFVCDIVSEIHLNADLITAQQKELLPLIEKAG
                     AEYEGWGTYFEDPNADEDEYGDDGEFFDDENDDFEDEPRRH"
     gene            complement(8238..8849)
                     /locus_tag="PXE26_001388"
     CDS             complement(8238..8849)
                     /locus_tag="PXE26_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HDL5593972.1"
                     /translation="MKLNYHKTHFLTSAPDIRHLPEDTGVEIAFAGRSNAGKSTALNA
                     LTNQKSLARTSKTPGRTQLINLFKVETNCKLVDLPGYGYAAVPEQMKIQWQKALGEYL
                     QKRECLGGVVILMDIRHPLKDLDQQMIEWAVSANLPVLLLLTKADKLSQSARSKQVKM
                     VREAILPFQGDIQVEAYSALNKIGIDKLSNKLDSWFAPKLITE"
     gene            complement(8851..9267)
                     /locus_tag="PXE26_001389"
     CDS             complement(8851..9267)
                     /locus_tag="PXE26_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HDL5593973.1"
                     /translation="MSWYKALFSFNGRLNRRGFWIGFGIHFLFLFMVAMWINLAELSL
                     LSVLPLIITGFSLSAIIIKRLHDRNRSAKALLMALVPIICYLAAPYSQGIMQILLGQV
                     MPAFIGMLLFLEWGVFAGNPEPNQYGEQGLSFKFRE"
     gene            complement(9271..10101)
                     /locus_tag="PXE26_001390"
     CDS             complement(9271..10101)
                     /locus_tag="PXE26_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HDL5593974.1"
                     /translation="MFEYFLSLSPIWQAFLAGLFTWGCTIFGSSFVYFFKSVNRKLLD
                     SMMGFAAGVMIAASFWSLLAPSLEYAEADYGSLAWLPAAIGFLAGGAFIRLIDYVVPH
                     LHLSKPIEQAEGNDQLKQGLSKSTLLFLAITIHNIPEGLAIGVAFGALATQVSGVDAS
                     IMGAIGLAIGIGLQNIPEGSSLVLPIRGEGHSRKKAFWYGSMSAVVEPIAAVIGAVFV
                     LSMTAILPYALAFAAGAMIFVVVEELIPESQSSGNTDIATLSLMLGFVVMMVLDVALG
                     "
     gene            complement(10438..10553)
                     /gene="rrf"
                     /locus_tag="PXE26_001391"
     rRNA            complement(10438..10553)
                     /gene="rrf"
                     /locus_tag="PXE26_001391"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(10715..13613)
                     /locus_tag="PXE26_001392"
     rRNA            complement(10715..13613)
                     /locus_tag="PXE26_001392"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(13930..14005)
                     /locus_tag="PXE26_001393"
     tRNA            complement(13930..14005)
                     /locus_tag="PXE26_001393"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13970..13972),aa:Ala,seq:tgc)
     gene            complement(14062..14138)
                     /locus_tag="PXE26_001394"
     tRNA            complement(14062..14138)
                     /locus_tag="PXE26_001394"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14102..14104),aa:Ile,seq:gat)
BASE COUNT         4084 a         3321 c         2709 g         4054 t
ORIGIN      
        1 aagagtgttt gtcaagactt gtcttgaaac tttttttgca tacaatcatc taccagttcc
       61 aaacataaac tttaagatag agcctacgaa tatgtctaga aacctcttcc aaaaacgctt
      121 aaatattaag ccgtatgagt atcctgagct tcttgaattt aaagatgcaa ttcgccattc
      181 ttactggtta cacaccgaat ttaacttcac cggcgatatt caagactatc gcaccaccat
      241 taacgatcac gaacgtcacg tgttaacccg agcaatgctt gcgatttcac aagtagaagt
      301 gaatgtaaaa cgtttctggg gcgagctata ctgctatttc ccaaaaccgg agatggacga
      361 tgtaggcggt acttttgctg aaagtgaagt tcgccataaa gatgcttact cgttcctatt
      421 ggaaaaatta ggcctaaatg aaatgttcag tcaaattcat gaaattgaac cattaatgaa
      481 ccgcattcgt tatatggaaa gttttatgaa agataaagat gctggcaaag gcgaatttgt
      541 tttatcgtta gtgctgttct ctttatttgt tgagcatatt tcattgtttg gacagtttat
      601 tatcatgatg tcgttcaaca agcataaaaa cctgtttaaa gggatttcca atgcggttga
      661 agccacctca aaagaggaag aaattcacgg taaattcgga attgcgttat acgaaatttt
      721 acgtgacgaa cacagtgaac tattcacacc agaatttttt gaagatttgc aaaccttggc
      781 aaatcaagcg tttgaagcag aacgtggcat cttagactgg attttcgaag aaggtgattt
      841 aagctttatc accaaagcga cggtagaaaa ttacattaaa aaccgttaca acaattcttt
      901 aagcatttta gggttagagc cgccacacga catcgaccct gaattattaa aagagactga
      961 gtggtttgat attgaaattc tttcaaccaa agaaaccgat ttctttaaca aacgtagcac
     1021 cgattattct aaaaaaatga aacagattac cgcagatgac ttattttaat acagaccgcc
     1081 cggacttcca ctggcttaat gaagacagcc gtttattctt acaacgtggc tatttattgg
     1141 aaggaacaac cgcattagac cgcattcgtt ttattgccga acacgcagag cgaaaactcg
     1201 gcattgaagg ctatgccgat aaattctatc actatatggc aagaggctac ttctcgcttt
     1261 cttcgccaat ttggtcaaac tttggcttag atcgtggctt accgatttct tgtttcggta
     1321 gctacatcgg cgactctatc catgaaatta tggtgactac cgctgaagtg ggcatgatga
     1381 gtaaaattgg cggtggtact tcggcctact ttggcgatat tcgtccgcgt ggctcgttaa
     1441 ttaaaaacaa cggtaaatca gacggctcat ttaacttcag taaattattt gacactgtga
     1501 ttgacgtgat ttcacaagga acatcacgca aaggtcagtt tgccggttat attgatattg
     1561 agcacggcga tattgacgaa tggctggata ttcacaccga aggcaaccca attcaattaa
     1621 tgtattacgg tgtgtgtgtc ggtcacgatt ggttagagtc aatgaaagcc ggcgatccat
     1681 acaaacgtca gctttgggca aaattgttac aacgtaaaac cgaaaccggt atcccttatt
     1741 tattctttaa agacaatgcc aacgcaggtc gtcctgatgt atataaagat aaaaatatga
     1801 cgattcacgc ctctaactta tgtactgaaa ttatgttgcc ttccagcaac gaagaaagtt
     1861 tcgtatgctg tttatcgtct atgaacctac tctactttga tgagtggaaa gataccgatg
     1921 caccagaaac attaacctat ttcctcgatg ttgtaatgag tgaatttatt gagaaaagtc
     1981 aatcaattcc attcttagac cgtgcaaacc gctttgcccg tcgccatcgt gcattaggtt
     2041 taggcgtgtt gggctggcac agctatctac aggcaaataa tattgccttt gacagcttcc
     2101 aagcgatgca aaaaaacaac gagattttca aaacgcttca agcaaaaacc ttgaaagcct
     2161 cgcaagaatt ggctcaacgc ttcggcgagc cggaaatttt agagggctat ggtcgccgta
     2221 atactacatt aatgagtatt gctccgacta aatccagtag ctttatttta ggcagtgtgt
     2281 cgccatcggt agagccgttt aaatccaact actatgtaaa agatttagcg aagatcaaaa
     2341 ccgtgtataa aaacccgttc ttagagaaat tactccaaga aaaagggcta gacaccgaag
     2401 aaatttggac gtctatttta caaaatgatg gctcggttca gcatttggaa cagctttccg
     2461 agcacgaaaa agaagtattt aaaacctttg ccgaaatcag ccaattaagc gtgattcagc
     2521 aagctgctca acgtcaaaaa tatattgacc aagggcaaag tattaatgtg atgatccacc
     2581 cagccacacc ggctcgtgat cttaaccaat tatacttaac agcagaagag ctgggcttaa
     2641 aatccatcta ctaccaaaac tcaatgagtg cagcacaggt atttaaccgt aacctattaa
     2701 gctgctcaag ttgcgaaggg taaataatgg gaaatttatc gcatacttca cctaatacta
     2761 ttgttgaagt tgttggtgaa tttcctgaaa taacatctag tgggtatacc tttgataaag
     2821 gtcctattca attaagaatc ggcaaacata ctgctccaaa taaaggcttt ggtgtaaagc
     2881 atattgaagc cgagcatatg caagaaattc ttaatctagg atttacatca gttaatgaat
     2941 ttgtcaaagc tatcatagta gaaaacgcta aaattttttg cgaattctca gatttaaaag
     3001 gcaatcatcg ccctattatt ctgaaagcaa gtattggcat tgtggttcta gagcgtaagt
     3061 ttttggaaag cggtacgata tattcagttg taaccgctta tagaagaaca aatcctcacg
     3121 gaatacaaat aggcactatg aaataaagta cgttagtgtt ataatcagtt ccacgcaaga
     3181 gcatttgtag aaaataacag gcggatttgg ttttctactg tgggcggcag gtttccgcta
     3241 acctgtaata gctatttaat ttttatatta aatcctgaac ttgaaacaga ctaagggatt
     3301 gctgcggtag ctaagaatac aaacctctct ataatcatat agagaggttt tttcttattg
     3361 atgagcacaa gttaagataa ttatttactc tcccgacata acttcaaggt agcttgaatc
     3421 agctcaaaag ctattgtgcc ttgttgtggg atttcaggta agctttcctc acagtcgaac
     3481 cattttgcat cgcagatttc ttcttcctgt agctgaattt caccgctttc ataatccgct
     3541 aaaaaaccta gcattaatga attgggaaac gcccaaggtt ggcttccaaa ataacgcaca
     3601 tttttcactt taatgcccgt ttcttcaaac acttcacgat gcaccgcagt ttctaccgcc
     3661 tcaccggctt cgacaaaacc ggctaaagtg gtataaattg tgcctttatg gcgtagatga
     3721 ttggctagta ggatttgtct gccttttcgc accgccacaa taattgacgg gctaatcgtt
     3781 gggtaagctc gattgccaca cgcattgcag taaattgcaa tttcatcgct tgccagtatg
     3841 gttttctcgc cacattttcc gcaaaattgg tgagtctgaa agaaatggtt aagcgaaaca
     3901 gctcgatgca acaaatgaga cagttcgggt ggtcggttaa tttggcttct taaataagca
     3961 aactctcgct gattatccga ttctaacgcc ttcaccaaat aagccggcga gccttgatat
     4021 tgcccgatgg ttaatttctc acgtccactt aagcccagct cttccgcact tccgaatgga
     4081 atttccccag cctccaaggc aatatcaaaa tcgctgacga taatccaata tcctttattc
     4141 atctttcaat cctaattgtg taaacaactt acgtttttca ttttcagata gcacttgaaa
     4201 ctcaccacag cctaaattgc ctaatctaaa ctggcctatc ccaacacgaa ttaaccgtaa
     4261 agtcgggaaa ccgatatgtg cagtcattct tctgacttgg cgatttttcc cttcagaaat
     4321 aatcaattct atccagctgg tcggaatggt tttccgctca cgaatttgcg gggcgatatt
     4381 ccaagcaaaa tcgggcgttg ctattgctct gactttcgcg ggcttggtca aaccatcttt
     4441 taactccacc ccttttgcta atttggcaag atcttccggt tgtggaacac cctccacttg
     4501 tacccaatag gttttctgct tgtcaaattt cgggtgagct aaacggtgct ggatttcgcc
     4561 attattagtc aaaagcaaca atccttcact gtctctatct agccgcccga ccgggtaaat
     4621 attgggcatc gtaataaaat cttttagcgt ttttcgcccc tgttcatcgg taaattgggt
     4681 tagtacatca taaggcttat tgagtaacac aagggtggtt tccgcaaagg taagcggtcg
     4741 tttttgcgga tttttttgca aatttttagc gaaatttgac cgcttgtttg tcattctttt
     4801 aaaggttggt tgtttcattt tttcaggttc gcccacgcaa cagaaagtaa aataattaag
     4861 ccaccgataa tcattttaag ggttggcact tcattaaagc aaagccacgc gatcacaatc
     4921 gcatacaccg gctcgaggga aataatcatt gaggcagtac gggcgttgat ggtatcaagg
     4981 cttgaaataa acagcgtata ggcaagggtt gtacataaaa aaccgataca gaaaatccaa
     5041 aaccaatctt gggtggaaac gcttggaaat tcagtgatgg agagaggcaa cagaaaaagt
     5101 gtagcaaaaa tatactgcca ccagcttgct tgcacaccgg aaattttgct catggtacgg
     5161 cgattcgcta ccgccaaaat accatacacc aaagcagata acacgcccca caataaacct
     5221 tgagtggctt gattaccaaa agtaaattca ggggtaacta aaattaaacc aaccgtgatg
     5281 gcaattaata gcaccacttc acgaaagcgt aatttttcac ggaagaacag gctttcaaat
     5341 aacgccacaa atgccggaaa gctggcaaag cctaaggttg ctaccgccac accacctact
     5401 ttaaccgcca caaaaaaagt aacccagtgg gcagctaata aagctgcaga aaatgcaagt
     5461 tgagccattt gctgtaagtt gagctttaca agcggttgtt ttttccataa aaaatacaaa
     5521 gagatgatag caaaagcaat catcactcgc ccaagcacaa tggtttcagc cgagctttga
     5581 attaatgctc cgaagatccc cgaggcacca aataaaaccg ctgtgccgtg tactttaagt
     5641 agtgcaagtg ttcttttctc cactatttga tcctattatg ttgatcttgc tcgtccggct
     5701 tgcgttcaaa ttctgcatca aacgtgttgc tatcttgcgc agatgtaaca gaaaaagacg
     5761 aagtttgggc ggtaaaatgc ataaacacct tattctttac gctattaatt acgaaggctt
     5821 gaatccattt tcggctaaag ggtaacacgc ataaaatcgc taaaatatca cttaaaaagc
     5881 cgggaataat cagcaaaatg ccggctacaa taaacatcac cgagttgccg actgcttcag
     5941 tcggtatctt gccttggctt aaatcttgct tgatggaaaa gagggtataa acgcccctta
     6001 acttcacaat ccataaccct aaaaatgaaa tcacgaccag taacaaaatc gtgggtaaca
     6061 cgccaatgat cgagccaata ttcaccagca gcgaaatttc gcaatagata taaaagaaaa
     6121 taccaaacag aatcgctaaa ataggcatat tatcctccca acgttgcggc agcgtttgcc
     6181 gtcagatttt ctgccccatt ggctcgcatg acaatattgt cttcggtacg aatcccgcca
     6241 aaggctttga aagcctcaat tttctgccag ttaaaggcag aagataaggc actgtttttc
     6301 caaggcttaa gtagcatctc aataaaataa aaacccggct caatggtaag caccatattt
     6361 tcctgtagct cacgggtaca acgcaaactt gggtaaacct ctggaggagc tttatggctg
     6421 cctcgggcat tttgctgaaa accgcccaca tcgtgcactt gaatacccaa taaatgccct
     6481 agtccgtgtg ggaagaacgt acggctaatc ccttgttcaa aaatttgctc ggctgaaaga
     6541 tgaataaatt gatgttccgc taataattgc gaaatcatct gctgcattcg ggtgtgataa
     6601 tgcaggtagt tcaccccaat actcagctca gcaataatct gcaacttcaa ctgttccatt
     6661 ttcgccacca gctcggcaaa ttcagaaccg ctgtcaaagg cataggtgcg ggtgagatcg
     6721 gaggcataac catttaccgt tgtgccggca tcaattaaaa aactgtggcg ttttgcgtgg
     6781 gtgtcaaaat ctaacgccgt ataatgtagc accgcaccat tttgattaat cgccacaata
     6841 ttgccataag gaacattgag atcagattgc tgcgtcgctt tcaaatattc aaggttgatt
     6901 tcaaattcgc ttttgccggc aaaaaatgcc tcttttgcta cttgatgccc ttttaaggct
     6961 gaaaattggg cttggtaaat actttcaatt tcaaactccg ttttgatgga gcgggcaaaa
     7021 ttcaggctat tcagcacttt ctgcggatta atatggctaa agcctaactt tttggctagc
     7081 tcaacatctt caccgataaa ggcacaagcg gtcggatttt ggataaaggt tgcaatttca
     7141 ttctctgctc tcaacaaaac ccactcaaat tccgcagcga aaaaggcctc cgttggcact
     7201 tttagagtgg aaacccaata atcttcaggg gcataaaaat agattttcgg cttatttttg
     7261 ccatctaaaa ataaccagca attttcagct tggggatatg ggaaaaagta attaaaataa
     7321 gggttaattt taaacggggc ggtttgatcg tctaaaaata aggtttttgc cttgccggca
     7381 taaatccata aaccgtctaa aaaggcattt tccagcaagc tttgcactgt ctgttgcaaa
     7441 cgtgcgagat gcgtagagaa tagatttttc ataaggaata aaatgactca attaactgta
     7501 aataaagaat tagatacctt ggggctacgt tgcccagagc cggtgatgct cacccgtaaa
     7561 acaatccgta atatggaaga gggagaaatt ttgcatatca tcgccgatga cccggccact
     7621 acccgtgata ttccgagttt ctgcgaattt atggatcacc aattaattca aaaagaggtg
     7681 gactccaccc cataccatta ctggattaaa aaaggcttgg aataaaccac aagcggtcga
     7741 ttttagccat aaaattgcaa atttatgcac aaaatcgacc gcttgtttta attaatgacg
     7801 gcgaggttcg tcctcaaaat cgtcattttc atcatcgaaa aattcaccgt catcgccgta
     7861 ctcatcttca tcagcattcg gatcttcaaa gtaggttccc cagccctcat actccgcacc
     7921 ggctttttca attaatggca gtaactcttt ttgttgtgcg gtaatgagat ccgcattcaa
     7981 gtgaatttcg ctcacaatgt cgcatacaaa aatcacttta ccattttcgt cttccacttc
     8041 ttccgcttcg gaaatttcat agcccagctt ataggcatca actactaatt tttccaattt
     8101 atcaaaatcg tggtgagcaa cgtggtgttc aataatataa agggcttcag ggtctgaacc
     8161 atcggctaat aatgatgaaa tggtttcatc ggtttctgtg cgtaattcat cgagattgta
     8221 catattgaat tccttactta ttctgtgatt aattttggtg caaaccagct atctaatttg
     8281 ttcgacagct tatcaatacc gattttattc agtgcggaat aagcctctac ttggatatca
     8341 ccttggaatg gtaaaatcgc ttctcttacc atttttacct gcttagagcg tgccgattgg
     8401 cttaacttat ccgctttggt caacagcagt aacaccggca agttggctga cactgcccat
     8461 tcaatcatct gttgatctaa atctttcaac gggtggcgaa tatccattaa aatcaccaca
     8521 ccgcctaaac attcacgctt ttgtaaatac tcgcctaatg ctttttgcca ctggattttc
     8581 atctgttcag gtactgctgc atagccatag ccaggtaaat ccactaattt acaattcgtt
     8641 tcaaccttaa acaagttaat caactgcgtt cgccccggtg ttttggaagt tcgggctaaa
     8701 cttttttggt tagttaaagc gttcaaagca gtcgatttac cggcatttga acgcccggca
     8761 aaagcaatct ccacacctgt atcttcaggt aaatgacgaa tatccggtgc tgaagttaaa
     8821 aaatgggttt tatgatagtt taatttcatt ttattctcta aatttaaaag ataagccttg
     8881 ctcgccatat tgattcggtt caggattacc ggcaaataca ccccattcta aaaagagcaa
     8941 cattccaata aatgccggca tcacctgtcc aagcaatatc tgcataattc cttgtgaata
     9001 aggagctgca agataacaaa taatcggcac taatgccatt aacagggctt ttgccgaacg
     9061 atttcggtcg tgtaatcgtt taataataat agcagacagg ctaaatcctg taattataag
     9121 cggtagcaca ctcaataaag acaattcagc caaatttatc cacatagcaa ccataaacag
     9181 gaaaagaaag tggattccaa atccaatcca aaaacctcgt ctatttagcc taccgttaaa
     9241 actaaaaagt gctttatacc aactcatttt ctaccctaaa gctacatcaa gtaccatcat
     9301 tactacaaag cctaacatca ggcttaaagt cgcaatatca gtatttcccg aactttgcga
     9361 ttccggaatc agttcttcta cgaccacaaa aatcatcgct ccggcagcaa aggcaagagc
     9421 ataaggtaaa atagccgtca tcgacagcac aaaaaccgcc ccaatcaccg ccgcaatagg
     9481 ctcaaccact gctgacatag agccatacca aaatgctttc ttccgactat gcccttcgcc
     9541 tcgaattggc aatacaagtg acgagccttc gggaatgttt tgtaacccta ttccgattgc
     9601 caaaccgata gctcccataa tggaagcatc tacgcctgaa acttgggttg ccaaagcacc
     9661 gaaagccacc cctatggcta atccttctgg aatattatga atggtaatcg caagaaaaag
     9721 caaagtagat tttgataagc cttgtttaag ttgatcattt ccttcagctt gctcaatcgg
     9781 cttactcaag tgcaaatgcg gcacaacata gtcaattaat cgaataaaag ctccaccggc
     9841 aagaaagcca atcgctgcag gcagccaagc taaagagcca taatccgcct cggcatattc
     9901 taaagaaggt gcaagcaaag accaaaacga ggctgcaatc attacacctg cggcaaagcc
     9961 catcatactg tctaataatt ttcgattaac cgatttaaaa aaatagacaa atgacgaacc
    10021 gaaaatcgta caaccccaag taaataaacc cgctaaaaaa gcttgccata ttggagaaag
    10081 tgaaaggaaa tattcaaaca agaaatagta ccagctaaaa taaatattgg ctcattctat
    10141 caaagattca gggttattaa tatagtgtag ccaaaggctc aacgaagatt tcacttgtaa
    10201 aacttagcaa gaaaataacc gcttgcattt ccctttcata aatacaatga aaatcctaac
    10261 aagcggtcat tttccgtgag ttttttacct ttaccacaac aacaaaaaac cgcctgtatc
    10321 tctacaggcg gctctttctt ggattacttg tactttgttt atttgtactt attttgcttt
    10381 tgcttaagtt ttcgcttttg taacttttag ctttcgctta agctcgctta aattaaaacc
    10441 cgacgatgct ctactctcac atggcgaatc accacactac catcgacgtt actgcgtttt
    10501 acttctgagt tcggtatggg gtcaggtagg accacagcac tcttgtcgtc gggaaaattc
    10561 ttttctattt ttgaatttct ttaagttaac ttcctaatct aactcttagt tcactttaat
    10621 agttagatta acttccttaa cttcgattga tttcttctct agtttcgttc ttcttctcaa
    10681 tacaaaaaca agcctaaaaa catttgagcg ttgtatagtt aagcctctcg ggcaattagt
    10741 actggttagc tcaatgtctc acaacactta cacacccagc ctatctacgt cgtagtctcc
    10801 aacaaccctt acacacttat agtgtgggag aactcatctc gaggcaagtt tcgtgcttag
    10861 atgctttcag cacttatctc ttccgcatgt agctacccag caatgcctct ggcgagacaa
    10921 ctggaacacc agtgatgcgt ccactccggt cctctcgtac taggagcagc ccctctcaat
    10981 tctccaacgc ccacggcaga tagggaccga actgtctcac gacgttctaa acccagctcg
    11041 cgtaccactt taaatggcga acagccatac ccttgggacc tacttcagcc ccaggatgtg
    11101 atgagccgac atcgaggtgc caaacaccgc cgtcgatatg aactcttggg cggtatcagc
    11161 ctgttatccc cggagtacct tttatccgtt gagcgatggc ccttccattc agaaccaccg
    11221 gatcactatg acctgctttc gcacctgctc gacttgtctg tctcgcagtt aagcttgctt
    11281 ataccattgc actaacctca cgatgtccga ccgtgattag caaaccttcg tgctcctccg
    11341 ttactctttg ggaggagacc gccccagtca aactacccac cagacactgt ccgagaccgc
    11401 gttccgcaat cttcgttaga acatcaaacg ttaaagggtg gtatttcaag gacgcctcca
    11461 caatcactgg cgtgactgct tcaaaggctc ccacctatcc tacacatcaa aattcaatgt
    11521 tcagtgtcaa gctatagtaa aggttcacgg ggtctttccg tctagccgcg ggtacaccgc
    11581 atcttcacgg cgatttcaat ttcactgagt ctcgggtgga gacagcctgg ccatcattat
    11641 gccattcgtg caggtcggaa cttacccgac aaggaatttc gctaccttag gaccgttata
    11701 gttacggccg ccgtttactg gggcttcgat caggagcttc tcttgcgata acaccatcaa
    11761 ttaaccttcc agcaccgggc aggcatcaca ccctatacgt ccactttcgt gtttgcagag
    11821 tgctgtgttt ttaataaaca gttgcagcca gctggtatct tcgaccggtt caaccttcat
    11881 ccgcaaggga ctacaatcta cgccggcgca ccttctcccg aagttacggt gctattttgc
    11941 ctagttcctt cacccgagtt ctctcaagcg cctgagtatt ctctacctga ccacctgtgt
    12001 cggtttatag tacggtttat aataacctga agcttagtgg cttttcctgg aagcgtggta
    12061 tcgattactt catctccgta gagactcgtc atcacttctc ggtgttaagg aagaccggat
    12121 ttgcctaatc ttcccaccta ccggcttaaa cagacatcca acagtctgct aacctaacct
    12181 tctccgtccc cacatcgcag ttattacaag tacgggaata ttaacccgtt tcccatcgac
    12241 tacgcttttc agcctcgcct taggggccga ctcaccctgc cccgattaac gttggacagg
    12301 aacccttggt cttccggcga acgagttttt cactcgtttt atcgttactt atgtcagcat
    12361 tcgcacttgt gatatctcca gcagacttct caatccacct tcatcgactt acacaacgct
    12421 cccctaccca acagactttc gtctgatgcc gcagcttcgg tgctatattt gagccccgtt
    12481 acatcttccg cgcaggccga ctcgactagt gagctattac gctttcttta aatggtggct
    12541 gcttctaagc caacatccta gctgtctaag ccttcccact tcgtttccca cttaatatag
    12601 actttgggac cttagctggc ggtctgggtt gtttccctct ccacgatgga cgttagcacc
    12661 caccgtgtgt ctcctgagta tcactcttcg gtattcgcag tttgcatcgg gttggtaatc
    12721 cgggatggac ccctagccga aacagtgctc tacccccgaa ggtgtccgct caaggctcta
    12781 cctaaataga tttcggggag aaccagctat ctcccggttt gattggcctt tcacccccag
    12841 ccacaagtca tccgctaatt tttcaacatt agtcggttcg gtcctccagt tagtgttacc
    12901 caaccttcaa cctgcccatg gctagatcac cgggtttcgg gtctatacct tgcaactaca
    12961 cgcccagtta agactcggtt tccctacggc tcccttattc agttaacctt gctacaaaat
    13021 ataagtcgct gacccattat acaaaaggta cgcagtcaca agattactct tgctcccact
    13081 gcttgtacgc acaaggtttc aggttctatt tcactcccct cgccggggtt cttttcacct
    13141 ttccttcaca gtactggttc actatcggtc aatcaggagt atttagcctt ggaggatggt
    13201 ccccccatct tcaaacagga tatcacgtgt cccgccctac ttgttgttag cctagtacca
    13261 caatggagtt ttaaggtacg ggattatcac cctctacgat tgtccttccc agaacattcc
    13321 cctaacttta ctgctatcac taactggctc tttcgcgttc gctcgccgct actaacgaaa
    13381 tctcggttga tttcttttcc tcggggtact tagatgtttc agttctcccg gtttgcctca
    13441 cacagctatg tattcactgg gtgatagtag gttcttcacc tactgggttt ccccattcgg
    13501 acatcttgga ttaaacgcct cttatcgact catccaagct tttcgcagat tagcacgtcc
    13561 ttcttcgcct ctgattgcca aggcatccac cttgtgcgct tagtcactta actatacaac
    13621 ctcaaatgtt ttctaaaact tctcaaaaat aaaagtaaaa aaacaatgaa gtcagtttta
    13681 caactaaaca cttgactgct tttgttcagt caagattttt tctactcaga ctttcaattt
    13741 attcgttatc acttatgtat aattacttat gcgtaacgaa cttgaaatat ctctcagttt
    13801 ttcagcttgt ttccatattg ttaaagaaca aagataatgg ctttcgccta tcatcatacc
    13861 taaaattgca aataatccgg tatttttaac cgcttgtaat cttaggtatg atgataaagt
    13921 cacgatgatt ggtggagata agcgggatcg aaccgctgac ctcctgcgtg caaggcaggc
    13981 gctctcccag ctgagctata tccccatttc atcttccgtt ttcttcactc atagtcgctt
    14041 cgctttcgct tgccttctga gtggtgggtc tgagtggact tgaaccaccg acctcaccct
    14101 tatcaggggt gcgctctaac cacctgagct acagacccaa cggatgacct tcggtttttt
    14161 gtcttctt
//
LOCUS       DANLZD010000065        14035 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.065, whole genome shotgun sequence.
ACCESSION   DANLZD010000065 DANLZD010000000
VERSION     DANLZD010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14035)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14035)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14035
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.065"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..633)
                     /locus_tag="PXE26_001395"
     CDS             complement(<1..633)
                     /locus_tag="PXE26_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HDL5593975.1"
                     /translation="MAEGLLLTPYFQTEVGIVFYKVPKDVSPAAFGERTLLQPAPTDL
                     ATVKSGKVANFSANSTACKELAVFAKSAKVRSTLNQRDKYSNDLPYIRFVKSIQTCQC
                     RDGKYCHTEKVLVENKNGAVQLCWHHDKMRMDGEIPNEKLEALADENWEKFIAQQIRL
                     TLRKTQSTAIEFADLVLFASIKGLLDELDSKALQQFLGYPPLNNSGVSKES"
     gene            complement(760..1353)
                     /locus_tag="PXE26_001396"
     CDS             complement(760..1353)
                     /locus_tag="PXE26_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5593976.1"
                     /translation="MTDFDKNTYQTPNYVRNWLNHRYAWFHIDGCSNGQNTLYTYWIG
                     RAADGLDDDKLSCQIADDFLADDLFDVLLDKVSDWGELLRIFVNPPYSDPLPFVQRAA
                     ELKKAGHLVVMLLPADKTTEWYTIIQQHANEVIDIIGYHDEKGTWRTGRIQFINPVTG
                     KPAQGNNKGSMIVVFDPFIEGIVTRQMPLDKIKEWGK"
     gene            complement(1364..2410)
                     /locus_tag="PXE26_001397"
     CDS             complement(1364..2410)
                     /locus_tag="PXE26_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conserved phage C-terminal domain-containing
                     protein"
                     /protein_id="HDL5593977.1"
                     /translation="MRFTSTINNVRLVEWEINITQGALVDLINQASSWAKAVVIDGIT
                     YYWMSFSKVCEELPAVFSKEDTVYRQYKVLKEKGIIDHFKMDGKDYVRLTEKGCEWNK
                     FEPIRESEKNPSIGNNSEQTRKNFRESSEKNPTDNNTNYKNNNDHTTPLNPPAGEPAP
                     AEVVLNYLNSALVTLAVQLGERKPVGYSLKPWAKNITARIRESSVADCCQVVDYLVAK
                     WGRDEKMREYLCPKTIFRQSNFADYFPKSTAWANNGKPVCVNGKWVTPAELEKRLIMP
                     TVDEVRALFQKSLSGNPFKALDFTNKRNLVMYHATINTRNKRPLERDLPMIISQEIKN
                     AVERIDRLRVPTFS"
     gene            complement(2407..3090)
                     /locus_tag="PXE26_001398"
     CDS             complement(2407..3090)
                     /locus_tag="PXE26_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage regulatory protein/antirepressor Ant"
                     /protein_id="HDL5593978.1"
                     /translation="MNQLLNISAPKASITMSSREIAELCEKEHRHVTRDIEAMFSQLD
                     IPAEGYAHFWTHPQNGQTYREFRLPYDLTLTLISGYSVILRKKIIDRWQELESRQGIP
                     QSFSQALRLAAEQQEVIEQQNHQLAIQAPKVAFVEHYVEVGTTKSLRETAKILNFPEK
                     RLIECLERYRVLYRQSGNLLPYQDKQAKQLFAVKTGTAEHGHNFTQTRVTAKGIEWIA
                     QRYASELGQ"
     gene            complement(3148..3336)
                     /locus_tag="PXE26_001399"
     CDS             complement(3148..3336)
                     /locus_tag="PXE26_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cro/Cl family transcriptional regulator"
                     /protein_id="HDL5593979.1"
                     /translation="MKKDDVLEHFGTLEKVAATLGISVSAVSQWGEIIPEKNAYRLQE
                     ITAGKLKVKHSLYRNRSK"
     gene            3461..4117
                     /locus_tag="PXE26_001400"
     CDS             3461..4117
                     /locus_tag="PXE26_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5593980.1"
                     /translation="MNTQTLGDRIKSRRKELKLTQKDLATALKGVSHVAVSQWESSTT
                     KPNSENILDLSTVLQCDISWLLRGNGESNVLPASLGMTKVPLISYIQAGQWTGIDDFR
                     ETCGDYEYILTDLEVSEDAFALEIKGDSMEPDFIEGDRVIIDPDVQPHAGEFVAAING
                     DYEATFKKYRPLEDLDEYGRQHFELIALNPDYHKLSTLKQEIRIIGTMVEHRIYRRKR
                     "
     gene            4129..4503
                     /locus_tag="PXE26_001401"
     CDS             4129..4503
                     /locus_tag="PXE26_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593981.1"
                     /translation="MTEFKDVKQAIVEAQLASTPKDKVVNDIMKGSAELLSANDIINR
                     LGIGADEFQELVNLPNHYLRINGGLGAAVYNTRRMFDTHVELVNQELEKNISFPKPDL
                     YILGKARWKKETFKKWLEEQCR"
     gene            4655..5392
                     /locus_tag="PXE26_001402"
     CDS             4655..5392
                     /locus_tag="PXE26_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDL5593982.1"
                     /translation="MLSKQVLSISESRLSTYLFCFFRNDPTKQKEAIAIYTALQHRTG
                     IYFSLIQEIEVALRNEVSQLLRFAAPNHNLYEFFHFLANDSNAPLNAESKRQLQKAIS
                     ECGRNYNENDIISHISFGFWVNLFNYDIKRNQYVAYWQSVLKPIFGHRFSNFKDLYNT
                     LKQIMRFRNRLYHQEVVWNKRIAKKPTHALENLEKTYKQFELALQKIAPERFAFRQLS
                     QALIWQRQIFFDQQIFEAEIVILPQHI"
     gene            complement(5428..6024)
                     /locus_tag="PXE26_001403"
     CDS             complement(5428..6024)
                     /locus_tag="PXE26_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593983.1"
                     /translation="MKKLLMTLCCLPAFALANETGESCSKIEDSAKRLECYDSVFVKK
                     DTGKDEATDEKSNWEYEQKKDELRNATTYFAKIRSTNTIDFGFPYNSSSMNLMLRKDP
                     KYGNDVIFSVHGQFNGCMIESCKITVKFDDGKLESYRMIGADGGSNDTLFIENAKAMK
                     TFVDKLKKSKKLIVEASFYNYGKGQFTFDTQGLEWKHF"
     gene            6670..6855
                     /locus_tag="PXE26_001404"
     CDS             6670..6855
                     /locus_tag="PXE26_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593984.1"
                     /translation="MNKMKQLAPFALLILLLGIVGRMDYDDHIQMQRYKCERNQGFWQ
                     MESNGNQYCGGKYGTKN"
     gene            6839..7036
                     /locus_tag="PXE26_001405"
     CDS             6839..7036
                     /locus_tag="PXE26_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5593985.1"
                     /translation="MARKIDAGVEIVEVDKRFIAKFFYDGKLQHTTYPQYNRQNAIML
                     INRKIERFNIGRDKPIKLYKE"
     gene            7039..8013
                     /gene="ssb"
                     /locus_tag="PXE26_001406"
     CDS             7039..8013
                     /gene="ssb"
                     /locus_tag="PXE26_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5593986.1"
                     /translation="MAGINKVIIVGRLGNDPELRTMPNGDSVAKISVATSTEWTDKTS
                     GEKKQATEWHSIIAFRNLADIIGKYLKKGSQVYVEGKLRTRKWQAQDGTDRWTTEIIA
                     DQLQMLGSSNSGNSNNNWATEPAGNPPPTNPYNHVMTDSESRDFDDDIRVRWITKEQA
                     KQFINNISTDWMKTICSFALLTGARRTEILSMTWDKIDFIRKVAIVSNDIAKSEKARS
                     LLLNDDAIELLQKQRGKNPKYVFVGSKGQALQDINRKIFNKATEKCLLVDFHFHDLRH
                     TWASWHVQAGTPLFTLKELGGWETLEMVKKYAHLNADHLLNHANSVKF"
     gene            complement(8100..8176)
                     /locus_tag="PXE26_001407"
     tRNA            complement(8100..8176)
                     /locus_tag="PXE26_001407"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8140..8142),aa:Arg,seq:tct)
     gene            complement(8201..8277)
                     /locus_tag="PXE26_001408"
     tRNA            complement(8201..8277)
                     /locus_tag="PXE26_001408"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8241..8243),aa:Pro,seq:tgg)
     gene            8447..9307
                     /gene="folD"
                     /locus_tag="PXE26_001409"
     CDS             8447..9307
                     /gene="folD"
                     /locus_tag="PXE26_001409"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HDL5593987.1"
                     /translation="MTAQIISGSEVSSQIKKKVSEKIAHYLEQGKRNPGLAVILVGND
                     PASQVYVGSKRKSCAEIGIASKSYDLPEETTEAELLALIEKLNQDDSVDGILVQLPLP
                     KQIDSTKVIEAILPHKDVDGFHPYNVGRLSQRIPTLRPCTPYGVMKLLETTGVDLYGQ
                     HAVIVGASNIVGRPMALELLLGGCTVTVTHRFTKDLEHHVRQADILVVAVGKPEFIPG
                     EWVKDGAIVIDVGINRGADGKLKGDVEYSVASQKAAFITPVPGGVGPMTVAMLMQNTL
                     QTYENHLQAV"
     gene            9421..10872
                     /gene="thiI"
                     /locus_tag="PXE26_001410"
     CDS             9421..10872
                     /gene="thiI"
                     /locus_tag="PXE26_001410"
                     /EC_number="2.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HDL5593988.1"
                     /translation="MKFIIKLFPEIMIKSDSVRKRFIKILTSNIRNVLLKETENVSVV
                     RHWDFIEVRAKVDEETALVLDLLKRTPGIHHILEVEETPFTDMHDIFEQTYAAVKAEL
                     EGKTFSVRVRRKGKHDFRSLDVERYVGGGLNQRIETAKVKLTNPDVTVRIDIEHDKML
                     LIKARHEGLGGYPIGTQEDVLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEI
                     GVKQMAYHIWSRYSTSHKVRFIAINFENVVGEILEKVDNGQMGVVLKRMMVRAASRIA
                     ERFDIQAIVTGEALGQVSSQTLTNLRLIDKASDTLVLRPLITHDKEQIIAMAKAIGTD
                     DIAKSMPEFCGVISKNPTVKAIETKILEEEGNFNFEVLEQAVQTASYLDIREIAQQTE
                     KEVVSVETTTELSKNDVVLDIRSPEEVDEKPFRLDGVEVKELPFYKLSSQFSTLDQSK
                     TYLLYCQRGVMSKLQALYLKENGYSNVKVFRVK"
     gene            complement(10917..11624)
                     /locus_tag="PXE26_001411"
     CDS             complement(10917..11624)
                     /locus_tag="PXE26_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YwiC-like family protein"
                     /protein_id="HDL5593989.1"
                     /translation="MFKEKPVISNQHGALAMAMLPFLYAVIESGFSTLHIFFGLSWLF
                     LYFFSYPFLSLFSKKPTERNKKWAKIYFGLSILFALPLIYAQPSILQFLPIILPLGLV
                     QVHYAKQKDERNLWNDIAGILTFGIMGMAAYYLVTKQYQFEILLHPTLFFIATTFYIK
                     SMVRERRNPIYMEISIAIHLVLAMLYILCSLQAVFFAYLIATARAIIVPSFGWNVKQV
                     GMLEFPVILLFLASLIW"
     gene            complement(11692..12666)
                     /gene="pfkA"
                     /locus_tag="PXE26_001412"
     CDS             complement(11692..12666)
                     /gene="pfkA"
                     /locus_tag="PXE26_001412"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HDL5593990.1"
                     /translation="MSKKIKKIAVLTSGGDAPGMNAAIRGVVRTALNEGLEVCGIQDG
                     YYGLYHDKVIPLDRRSVSETINRGGTFLGSARFPDFKRPEVRKHCVETLKKYSIDALV
                     VIGGDGSYMGAKLLTEEFGYPCIGIPGTIDNDIVGTDYTIGYQTALETALDAIDRLRD
                     TSSSHQRISIVEIMGRHCGDLTLSAALAGGCEYVIVPEKGLDKDALMRSIEEGFHKGK
                     RHSIIAITELMTDVHALAKEIEARFGNETRATVLGHIQRGGSPCAFDRILASRMGVYA
                     VELLLQGFGGHCVGIQNEQLVHHDIIDAINNMRRPFKEELFEASRKLF"
     gene            complement(12773..13969)
                     /locus_tag="PXE26_001413"
     CDS             complement(12773..13969)
                     /locus_tag="PXE26_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HDL5593991.1"
                     /translation="MLNTQFRTHFPFFEKSDGWTYLDSAATTLKPDVLIEATSEFYAS
                     AGSVHRSQYDLPQTEQYELARDLVAKRFNVETREAVIWTSGTTQSINTVAYGLEHQIA
                     AGDEIVISVAEHHANFIPWQQLAQRTRAKLVVLPLNDKYEIELETLKNALSEKTKIVA
                     FNLVSNVTGVRQPAEQIIPLIRQSCSAKIVLDIAQAVCSEQVDVQKLDADFYAFSAHK
                     MYGPNGVGVLTGKLQSLEQIQPLVFGGKMLKNITESELTVAELPYRLEAGTPNIAGII
                     GFGQVLAWLEKWDFVALNHQLYDLAEYTCKRLNSYQNLQIIGQQNTPTISFVVKNQHP
                     ADIAAFLTQSKIAIRQGEHCAKPYLRHLEEVGTVRLSLAHYNNQQDVEHFFNALDFTL
                     EILQES"
BASE COUNT         4267 a         2790 c         2842 g         4136 t
ORIGIN      
        1 actttctttg ctcacaccgc tattattcag tggtggatag ccgagaaact gctgtaatgc
       61 cttgctgtct aattcatcaa gcaaaccttt gatactcgca aacaacacta agtccgcaaa
      121 ttcaatagcg gtagattgcg ttttgcgtaa ggttaagcgg atttgttggg cgataaattt
      181 ttcccagttt tcatccgcta gtgcttctaa tttttcattc gggatttcac cgtccattcg
      241 cattttgtcg tgatgccaac aaagctgtac cgcaccgttt ttattctcta ccagcacttt
      301 ttccgtgtgg caatatttgc catctcggca ttggcacgtc tgaattgact ttacaaaccg
      361 gatataaggc aaatcattac tatatttgtc acgctgattt agcgttgaac gaacttttgc
      421 cgatttagca aacaccgcca gctctttaca agcggtcgaa tttgccgaaa aatttgcaac
      481 cttgcctgat ttaaccgtcg ctaaatcggt cggtgcaggt tgcaacaaag ttcgctcacc
      541 gaaagcagca ggagaaacat ctttaggcac tttgtaaaac acaataccca cttcggtttg
      601 aaagtaaggg gtaagtagca aaccttccgc cattattgcc cccatttctc ggtttcatca
      661 taggctttca cgaatagcat aaatacgcca atacagatta aaaaaatcag tacgccaatt
      721 actgcaccaa taccaataaa tagttcccaa taatccattt tatttacccc attccttgat
      781 tttatctagt ggcatctgac gagttacaat gccctcaata aatgggtcaa acacaacaat
      841 catcgagcct ttattattac cttgtgccgg tttacctgtt accgggttga taaattgaat
      901 ccgccctgtc cgccaagtgc ctttttcatc gtgatagcca ataatatcaa ttacctcatt
      961 agcgtgttgt tgaatgatgg tgtaccattc tgttgtttta tccgctggta ataacatcac
     1021 aaccaaatga cctgcttttt tcaattctgc cgctcgttga acaaaaggca gtggatcaga
     1081 atatggcgga ttaacgaaaa tacgcagtaa ttctccccag tctgaaactt tatctagtag
     1141 cacatcaaat aaatcatcgg ctaaaaaatc atcggcaatt tggcaactta atttatcatc
     1201 atctaaaccg tctgccgctc taccaatcca ataggtgtac aacgtatttt gtccgttaga
     1261 gcaaccgtca atatgaaacc aagcataacg atgatttagc caattacgca cataattagg
     1321 tgtttggtaa gtgtttttat caaaatctgt cattgtctaa tccttacgaa aatgttggta
     1381 ctctcaaacg gtcgatacgc tcaaccgcat ttttaatttc ttggctgata atcatcggca
     1441 aatcacgttc aagtggtcgc ttgtttctgg tgttgattgt ggcgtggtac atcactaaat
     1501 ttcgtttgtt ggtaaagtcc aatgccttaa acggattgcc actgagtgat ttctggaaca
     1561 aggctcgtac ttcgtccacc gttggcataa tcaagcgttt ttccagctcc gccggtgtaa
     1621 cccacttacc atttacgcaa acaggctttc cgttattagc ccaagcggtc gattttggaa
     1681 aataatctgc aaaattcgat tggcggaaaa tcgttttcgg gcagaggtat tcacgcattt
     1741 tttcatctcg tccccattta gcgacaaggt aatccaccac ttggcaacag tccgccaccg
     1801 aactttcacg aatgcgagca gtaatatttt ttgcccacgg cttgagcgaa taccccacag
     1861 gcttacgctc accaagctgt accgccaacg ttaccaaagc cgaattgaga taattcaaca
     1921 caacttcagc cggggcaggt tcccccgctg ggggattaag gggggtagta tgatcattat
     1981 tatttttata attagtatta ttatctgtcg gatttttttc cgagctttct cggaaatttt
     2041 tccgagtttg ttcggagtta tttccgatac tcggattttt ttccgactca cggatcggct
     2101 cgaatttatt ccattcacaa cctttttcgg ttaaacggac ataatcttta ccgtccattt
     2161 tgaagtggtc gataatgcct ttttctttca acaccttata ttggcggtaa actgtatctt
     2221 ctttgctaaa aaccgcaggt aactcttcgc aaaccttgct aaatgacatc cagtaatagg
     2281 ttatgccgtc aataaccacc gctttcgccc aactggaggc ttgattgatt aaatcgacca
     2341 atgccccttg tgtaatattg atttcccatt ccactaagcg gacattgttt atggttgatg
     2401 taaatctcat tgtcctaact ccgatgcgta acgttgagca atccattcaa tccctttggc
     2461 ggttactctc gtttgggtaa aattatgacc gtgttctgcc gtgccggttt ttactgcaaa
     2521 aagctgttta gcttgtttat cttgataagg gagtaggttt cctgattggc gataaagaac
     2581 tcgatatcgt tctaaacatt caatcaaccg cttttctgga aaattgagta tcttggcggt
     2641 ttctcgcaat gatttagtcg ttcccacctc aacataatgc tccacaaatg cgactttcgg
     2701 ggcttgaatg gctaattgat gattctgctg ctcaatcact tcttgctgtt ctgccgccaa
     2761 ccgtagagct tgagagaaag attgtggaat accttgtctg ctttctagct cttgccaacg
     2821 gtcgataatt ttcttgcgaa gtatcacgct atagccggaa attagggtaa gggttaaatc
     2881 gtaaggcaat cgaaattccc ggtatgtttg cccattttga gggtgtgtcc aaaaatgggc
     2941 atacccctcg gcaggaatat ctaattgact aaacatcgct tctatatcac gagtaacgtg
     3001 tcgatgttct ttttcgcaca actcagcaat ctcacgacta ctcatcgtaa tgcttgcttt
     3061 tggtgccgaa atgtttaata attgattcat cgaaaatacc tttcgtgttt aattatgtat
     3121 gaaagccacc gttacagcgg tggtttttta tttgcttcta tttctataaa gtgagtgttt
     3181 gacctttaac ttgccggcag tgatctcttg taatctgtac gcatttttct caggaataat
     3241 ctcgccccat tgagaaacag cagatacact aatccctaaa gttgccgcca ctttttctag
     3301 agttccgaaa tgttcgagca catcatcttt tttcatattt tcttaattcc tttcttgaat
     3361 tttatttaag acctcttaaa tatacaatta aaggaaactt aagtcaataa atgttaagat
     3421 aacttaacag caactttatt tttaccttta aggggatact atgaatactc agaccttggg
     3481 cgatagaatt aaaagccgta gaaaagaatt aaaattgaca cagaaagatc ttgctactgc
     3541 gttaaaaggg gtctcacacg ttgcagtatc tcaatgggaa agtagtacga ctaagccaaa
     3601 ttcagagaat attttggatt tatctacagt attgcaatgc gatattagtt ggctcttgcg
     3661 tggtaatgga gagtctaatg ttctacctgc tagcctcggt atgactaaag tcccattaat
     3721 tagctatatt caagccggac aatggacggg aattgacgat tttcgtgaaa cctgtgggga
     3781 ttatgaatat atcctaactg atcttgaggt gtctgaagat gcttttgccc tagaaatcaa
     3841 aggggactcg atggagcctg attttattga aggagaccga gtaattattg atcctgatgt
     3901 acaacctcac gccggtgagt ttgtggcagc aattaatggc gattatgaag ccactttcaa
     3961 aaaataccgt ccgttagaag acttagacga atacggaaga caacattttg agcttatcgc
     4021 tcttaatccg gattaccata aattatcaac gctaaagcaa gaaatcagaa ttatcggcac
     4081 aatggtagag catcgtattt atcgtagaaa gagataggaa ttgataatat gacagaattt
     4141 aaagatgtaa aacaggcgat tgtagaagct caattagctt cgacacctaa agataaagtc
     4201 gttaatgaca taatgaaagg aagtgcggaa ctgctttcag caaatgatat tatcaatagg
     4261 ttaggtattg gggcagatga gtttcaagag ttggttaatt tacctaacca ttatttgcgt
     4321 ataaatggag ggttaggtgc tgctgtgtat aatacaagaa gaatgtttga tacccatgtt
     4381 gagttagtca atcaagagtt agaaaagaat atttcatttc ctaaacctga tttatatatt
     4441 ttggggaaag ctcgttggaa aaaagaaaca tttaagaaat ggttggaaga acagtgtaga
     4501 taaagaaaag gtaggttaaa aaacctacct tttctgaacc gcaaataagc gattctcaca
     4561 ctttacaaag caatccagct cctacgtctg gggcttcggg tccgttgcca gtgcaagtat
     4621 tattacatta aactaaactt gagtaaagga aaatatgttg tccaaacaag tgctaagtat
     4681 ttcagaaagt cggctgagta catatttatt ttgctttttc cgaaatgatc ccacaaaaca
     4741 gaaagaagct attgcaattt ataccgcctt gcaacatcga acaggaattt atttttcatt
     4801 gattcaagaa atagaggtgg cactaagaaa tgaagtcagc cagttgttac gctttgctgc
     4861 acctaatcat aatttatacg aattctttca ttttctagcg aacgatagta atgctcctct
     4921 taatgcagaa tctaaacgcc agctacaaaa agccattagt gaatgcggac gtaactataa
     4981 tgaaaatgac ataatttctc atatttcttt tggattttgg gtaaatctgt ttaattatga
     5041 tataaagcgt aatcaatatg ttgcttactg gcaaagcgta ttaaagccta tttttggaca
     5101 tagatttagt aattttaagg atttatacaa tacattaaag caaattatgc gttttagaaa
     5161 tcggctgtat catcaagaag tggtttggaa taagcgaatt gccaagaaac caacgcacgc
     5221 actagagaat ttagaaaaaa cttacaagca atttgagtta gcactacaaa agatagcacc
     5281 tgaacgattt gcgtttcgtc agctttcaca agcacttatt tggcaacgcc aaatcttttt
     5341 cgaccaacaa atttttgaag ctgaaatcgt tattttgccc caacatatct aagcaaaaag
     5401 ctacgcatct atgtagcttt ttcttaatta aaaatgtttc cactctaacc cttgtgtatc
     5461 aaaggtaaat tgccctttgc cataattgta aaaactcgcc tctacaatta gttttttcga
     5521 ctttttcaac ttatctacaa aggttttcat tgcttttgca ttttcaatga aaagcgtatc
     5581 attgctgcca ccatccgccc caatcattcg ataactttcc aatttaccat catcaaactt
     5641 cacagtaatt ttacagctct caatcataca gccattaaat tgaccgtgta cgctaaaaat
     5701 tacatcattg ccatatttag ggtctttgcg taacattaaa ttcattgatg atgaattata
     5761 cgggaaacca aaatctattg tgttagttga tctaatttta gcaaagtaag tcgttgcatt
     5821 acgcaattca tctttctttt gttcatattc ccaattagac ttttcatcgg tagcttcatc
     5881 tttaccagta tcttttttca caaagacact atcataacat tctaagcgtt ttgcactatc
     5941 ttcaatctta gagcaacttt ctccagtttc gttagctaaa gcaaaagcgg gcaaacaaca
     6001 taaagtcatc agtagttttt tcatataacc tccatagaaa tcccttctta ttttctcaaa
     6061 agcgtggttt tcggtctgtg atcaagctcg caatctcaat aattatattt taatggttta
     6121 aaaaacaatc aattaagaaa tcataactaa ttgaaattta agaaatctta aaaatactta
     6181 ttaaataagc ttaaattttg attgacttgt aatttaagtt ttcttaaact taattcatca
     6241 aaacgagcta cggctcaatg ctctttaaca attcggtgct tgtgcggacg atattaacaa
     6301 cctcgggcag ttgtaaagta atgctttata actcagtaag gttggttaga ccctgacata
     6361 caaatttgaa cgacttgcca aaaagaggtg gcaaggttta ggcaacacac tcgcaaggtg
     6421 tggagagctg aaaaggcaac actggtatca gtcctaagca atcacgctta tctcaagttt
     6481 gagtaagtac ggatacaagc agcacccgac ggaatggcga aagccgggcg ggcgacggcg
     6541 tgggcagaca cgcatttatt ccaaagctca tttcaccaag tgtgtttcgg aatacccaca
     6601 actagacgca agtcgctcca tttgcccacc gtaaaacgtg ggcttttttt aaccctaaag
     6661 gacaatccta tgaacaaaat gaaacaactt gccccatttg ccttgctaat tttgctatta
     6721 ggcattgtcg ggcgaatgga ttatgacgac cacatacaaa tgcaacgtta caaatgcgaa
     6781 cgaaatcaag gcttttggca aatggaaagc aacggcaacc aatactgcgg agggaaatat
     6841 ggcacgaaaa attgatgccg gtgttgagat tgttgaggta gataaacgat ttatcgccaa
     6901 gtttttttat gacggcaaat tacagcacac aacctatcca caatacaacc gccaaaacgc
     6961 aattatgttg attaaccgca aaattgagcg gttcaacatt ggcagagaca aaccaatcaa
     7021 actttataag gaataacaat ggcaggaatt aacaaagtga ttattgtcgg tcgcctaggt
     7081 aacgacccgg aactacgaac aatgccaaat ggcgattcag tcgccaaaat cagtgtagca
     7141 acttcaaccg aatggacgga taaaacctca ggcgagaaaa aacaagccac agagtggcat
     7201 agcattatcg cctttcggaa tttagctgac attatcggca aatacctgaa aaaaggctcg
     7261 caagtgtatg tggaaggcaa gctacgcact cgcaaatggc aagcccaaga cggcacagac
     7321 cgctggacga ccgaaatcat cgccgatcag ctacaaatgc tcggtagctc aaacagcgga
     7381 aacagcaata ataattgggc aaccgaaccg gcaggaaacc caccaccaac caatccatat
     7441 aaccacgtaa tgacggattc agaatcacga gattttgatg atgatatccg ggttcgttgg
     7501 attaccaaag aacaagccaa gcagtttatt aataatatta gtactgattg gatgaaaact
     7561 atctgctctt ttgctttatt aacaggagca aggcgaacag aaatactttc tatgacttgg
     7621 gataaaatag attttatccg taaagtagcg attgtttcga atgatattgc caaatctgaa
     7681 aaagcgagat cgcttttact taatgatgat gcaattgaat tattacaaaa gcagagaggg
     7741 aaaaatccta aatatgtttt tgtaggaagc aaagggcagg cattacaaga tattaaccgc
     7801 aaaatattta acaaagcgac tgaaaaatgt ttattggttg atttccattt ccatgattta
     7861 aggcatactt gggccagttg gcacgttcag gccggcacac cattatttac cttaaaagaa
     7921 ttgggtggct gggaaacatt agagatggta aagaaatatg cccatcttaa tgcagaccat
     7981 ttactcaacc acgctaactc agttaaattc tagtcacaaa ttagtcacaa agtatttttg
     8041 acataggaaa ttaataactg atatttaaat gtaactattt gaaatataag ggtaattaat
     8101 ggcacgccct aaaggattcg aacctttgac ccacgcctta gaagggcgtt gctctatcca
     8161 gctgagctaa gggcgcagat gaagataata taaaaagaag tggtcggcga gataggattt
     8221 gaacctacga cccactggtc ccaaaccagt tgcgctacca agctgcgcta ctcgccgaca
     8281 taagatgttg ttgattatag atttctttgc acaacagtca atcttttttt gtgaatgtcg
     8341 gcttaaatga ttgaagttta tccgttattc aaaattagct tatcaaaaag gctatttttt
     8401 gagagaatga cgaatgtttt gccaagtgat atttcgggag gtagtaatga ctgcacaaat
     8461 tatttcgggg agtgaggttt cttcacaaat taaaaaaaag gtgagtgaga aaatcgctca
     8521 ttatcttgaa cagggtaaac gtaaccctgg tcttgcggtc attttagtgg ggaatgaccc
     8581 agcctctcaa gtgtatgtgg ggagtaaacg caaaagctgt gccgaaattg ggattgcgtc
     8641 gaaatcttat gatttacccg aagaaaccac agaggctgaa ttattagcac tgattgaaaa
     8701 gttgaatcaa gatgattcgg tcgatgggat tttagtccaa ttaccgttac ctaaacagat
     8761 cgattcgact aaagtgattg aagccatctt accacataaa gatgttgatg gattccaccc
     8821 ttataatgtt gggcgtttat ctcagcgtat tcccacttta cgcccttgca cgccatacgg
     8881 tgtgatgaag ttgcttgaaa caactggggt agatttatat ggtcaacacg cagtgattgt
     8941 aggtgcgtct aatattgttg gtcgcccgat ggcgttagaa ttgttgcttg gtggttgtac
     9001 agtcacagtt actcatcgct ttaccaaaga tttagagcat cacgttcgcc aagcagatat
     9061 tttagttgtg gcagtcggca agcctgaatt tattcccggg gagtgggtta aagacggtgc
     9121 tatcgtgatt gatgtaggga ttaaccgtgg agcagacggc aaactaaaag gtgatgtaga
     9181 gtattcagtt gcctcacaaa aagcggcatt tatcacccct gtccccggtg gggtaggccc
     9241 gatgacggtg gcaatgttaa tgcaaaatac cttgcagacg tatgaaaacc atttacaagc
     9301 ggtctaattt tacggatatt ttgcaaatcc tcggcattgg tcgaggattt ctttttctgg
     9361 gctttttcag cagaaaaggc taaaatactt gccattttta ttacacgatc cttattaaat
     9421 atgaaattta tcatcaaact tttccctgaa attatgatta aaagcgactc tgttcggaaa
     9481 cgctttatca aaattttaac ctcaaatatt cgcaacgtat tattaaaaga gactgaaaat
     9541 gtgtctgtgg ttcgccattg ggactttatt gaagttcggg cgaaagtgga cgaagaaacg
     9601 gcattagtgc tggatttgct taaacgcacg ccgggtattc accatatttt agaagtggag
     9661 gaaacccctt ttacggatat gcacgatatt tttgagcaga cttatgccgc agtgaaagct
     9721 gaactagaag gcaaaacgtt tagcgtgcgg gttcgccgta aaggaaagca cgatttccgt
     9781 tctcttgatg tagagcgtta tgtcggtggt gggctgaatc agcggattga aacggcgaaa
     9841 gtgaaattaa ccaacccaga tgttacggtc agaattgata ttgaacatga taaaatgttg
     9901 ctgattaaag ctcgccacga agggttaggc gggtatccaa tcggcacaca agaagatgtg
     9961 ttgtcattga tttcgggtgg ttttgattcg ggtgtatcga gctatatgct gattcgcaga
    10021 ggttctcgtg tgcattactg ttttttcaat ttaggtggtg ccgcacacga aattggcgtg
    10081 aaacagatgg catatcatat ttggagccgt tatagtacct cgcacaaagt ccgttttatc
    10141 gccattaatt ttgaaaatgt agtgggtgag attttagaaa aagttgataa cggacaaatg
    10201 ggcgtggtat taaaacgtat gatggtgcga gcggcaagcc gtattgccga gcgttttgat
    10261 attcaagcga ttgtgaccgg tgaggcgttg gggcaggtct ctagccaaac actgactaat
    10321 ttacgtttaa ttgataaggc atcagatacg ctggtattac gtccgctcat cactcacgat
    10381 aaagagcaga ttattgcaat ggcaaaagcg ataggcactg acgatattgc taaatcaatg
    10441 ccggagttct gtggagtaat ttctaaaaat ccgacggtta aggcaatcga aactaaaatt
    10501 ttggaagaag aaggcaactt taattttgag gtactagaac aagcggttca aacggcgagt
    10561 tatttagata ttcgtgagat cgctcagcaa accgaaaaag aggttgtttc ggttgaaacc
    10621 acaacagaat tgagtaaaaa cgatgttgtg ctagatattc gcagcccgga agaggttgat
    10681 gaaaaaccat tccgtttaga cggggttgaa gtaaaagaac tcccgtttta taaactttcc
    10741 agccagttta gtacgcttga ccaaagcaaa acctacttgc tctattgcca acgtggggta
    10801 atgagtaaac tgcaggctct ttatttgaaa gagaatggct acagcaatgt aaaagtgttt
    10861 cgagtgaaat aatgcctctt tgattgcacc ttaatgattg attaaggtgc aattttttac
    10921 caaataaggc ttgctaaaaa gagtaagatc acaggaaatt caagcattcc aacttgttta
    10981 acattccagc caaagcttgg cacaataatg gctcgggcag ttgcaattaa ataagcaaaa
    11041 aagaccgctt gtagagagca gagtatgtaa agcattgcta aaaccaaatg tattgcaata
    11101 ctgatttcca tataaattgg gtttcttcgc tctcgcacca tactctttat atagaaagtc
    11161 gtagcaataa aaaatagggt agggtggagc agaatctcaa actgatattg tttcgttacc
    11221 agataataag ctgccattcc cattatgcca aaggttagaa tgccggcaat atcattccat
    11281 aaattgcgtt catctttttg tttggcgtag tgaacttgca ctaacccaag cggtagaatt
    11341 atcggtaaaa attgcaaaat cgaaggctga gcgtagatca aaggtaatgc aaatagaatg
    11401 cttaagccaa agtagatttt cgcccatttt ttattgcgtt cagttggctt tttactgaaa
    11461 agtgagagaa aagggtagga aaagaagtag agaaacagcc acgacagccc aaagaaaata
    11521 tgcaaagtgc taaaaccact ttcaataacg gcgtagagaa acggcaacat tgccattgct
    11581 aatgcaccgt gttggttgga tataacgggt ttttctttga acattcaatt tccctcttaa
    11641 tgtggcaaat aaaaaggcga ctaaacagcc gcctttaaat tgtaagaaaa gttagaataa
    11701 ttttctagag gcttcaaata attcttcttt gaacggacga cgcatattat tgatcgcatc
    11761 aataatatcg tggtgaacca actgctcgtt ttgaataccg acacagtgac cgccaaagcc
    11821 ttgcagtaat aattccaccg catagacgcc catacgggag gccaaaatac ggtcgaaggc
    11881 acaaggcgaa ccaccacgtt gaatatgacc taatacggtt gcacgggttt cattgccgaa
    11941 acgtgcttca atttctttcg ctaatgcgtg aacatcggtc atcaattctg taattgcaat
    12001 aattgaatgg cgtttacctt tgtggaaacc ttcttcaatg cttcgcatta atgcatcttt
    12061 atctaagcct ttttccggta cgatcacata ttcgcaacca ccggcgaggg cagcacttag
    12121 ggttaaatca ccacagtggc gacccataat ttccacaatc gaaatacgtt ggtgtgaact
    12181 tgaagtatca cgcaggcggt caatcgcatc taatgcggtt tcaagggcag tttgatagcc
    12241 gatggtgtaa tccgttccca caatatcgtt atcaatcgta cccggaatac cgatacaagg
    12301 gtaaccaaat tcttcggtta ataatttagc ccccatataa gaaccgtcgc caccaataac
    12361 cactaatgca tcaatgctgt atttttttaa ggtttcgaca caatgtttgc gaacttctgg
    12421 tcttttaaaa tcagggaagc gggcagaacc taagaatgta ccgcctcggt tgatggtttc
    12481 agacacggaa cggcggtcaa gtgggatcac tttatcgtgg taaagcccat agtagccgtc
    12541 ttgaatacca caaacctcta aaccttcatt aagtgcggta cgaaccacac cacggattgc
    12601 cgcgttcatt cctggtgcat caccaccact ggttaatact gcaatttttt tgattttttt
    12661 actcatttaa aaacaccttg ttgataaatt aaagttaaat tggaaactgg tgcaaggtta
    12721 caatattcag ccttttcgtt ctactaaaaa atacgtattt ttttgattta gcttagcttt
    12781 cttgcaaaat ttcaagggta aaatctagag cgttgaaaaa atgctcaaca tcttgttgat
    12841 tattgtaatg ggcaagtgaa agtcgaactg ttccgacctc ttctaaatgg cgtaaataag
    12901 gcttggcaca atgctcccct tggcggatcg caattttact ttgggttaag aaagcggcaa
    12961 tatcggcagg gtgctgattt ttcaccacaa agctaatagt cggtgtattt tgttgcccga
    13021 taatttgcaa attttgataa gaatttaacc gcttgcaggt gtattcagcc aagtcataaa
    13081 gctgatgatt aagagcgaca aaatcccatt tttcgagcca agctagcact tgcccaaagc
    13141 cgataatgcc ggcgatattc ggcgtgccag cttccaagcg ataaggtaac tctgccacag
    13201 ttaattcact ttccgtaatg tttttcagca ttttgccgcc aaatacaagc ggttgaattt
    13261 gctccaaact ttgcaatttg ccggtaagca cgcccacacc gtttggacca tacattttat
    13321 gggcggaaaa agcgtagaaa tctgcatcta atttctgaac gtccacttgc tctgagcaaa
    13381 ctgcttgagc aatatctaac acaattttag cagagcaaga ttggcggata agcgggatta
    13441 tttgttccgc tggctggcga actcctgtta cgttagaaac taaattaaag gcaacaattt
    13501 tggttttttc cgataacgca tttttaaggg tttcaagctc aatttcatac ttatcattaa
    13561 gtggcaacac cacgagtttc gcccttgtac gctgtgccaa ctgctgccaa ggaataaaat
    13621 tagcgtgatg ttccgccact gaaattacaa tttcatcgcc tgctgcaatt tgatgctcca
    13681 agccataagc cacggtgtta atactttggg ttgtaccgct tgtccaaatc accgcttcac
    13741 gagtttccac attgaaacgt tttgcgacta aatctcgagc taattcatat tgttcggttt
    13801 gtggcaaatc gtactgactg cgatgcaccg accccgcaga agcgtaaaac tcacttgttg
    13861 cttcaatgag tacatcaggt ttcagcgttg tagcggcaga atctaaatac gtccatccgt
    13921 cagatttttc aaaaaaaggg aaatgggtgc gaaattgggt gttaagcata agttaattcc
    13981 taagagttgt ggaaaattga gttaccaaga aaatacctat tataaaggaa tgttt
//
LOCUS       DANLZD010000066        14013 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.066, whole genome shotgun sequence.
ACCESSION   DANLZD010000066 DANLZD010000000
VERSION     DANLZD010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14013)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14013)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14013
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.066"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            45..818
                     /locus_tag="PXE26_001414"
     CDS             45..818
                     /locus_tag="PXE26_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5593992.1"
                     /translation="MLKKLSIAALALTLSVSAFAKESLLERINNKGTITVGTEGTYAP
                     YTYHDASGKLTGYDVEVTRAVAEKLDVKVEFKETQWDAMLAGLKGERFDLVANQVALT
                     SPERRATFDKSESYSWDGAALLVREDETKIKTPADVKGVKTAQTLSSNYGEIARENGA
                     DIVPIDGMAQGLLLIQQKRADATFNSHLSLLDYLKKNPNSGLKIVWEKEEKVGAGLIA
                     NKGNDEALAKISKAIVELREDGTLKKLGEQFFGKDISVQ"
     gene            901..1617
                     /locus_tag="PXE26_001415"
     CDS             901..1617
                     /locus_tag="PXE26_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDL5593993.1"
                     /translation="MLNDLLLSIPFMTQARVDLVLSGFWPMVQAAFLVSIPLAIASFI
                     IGMLIAVAVALVRISPATGFFHRLLLWLVKGYISIIRGTPMLVQICIVFYGLPAIGIF
                     IDPIPAAIIGFSLNIGAYGSETIRAAISSVPKGQWEAGYTIGMTYMQTFRRIIAPQAF
                     RVAVPPLSNTFIGLFKDTSLASVVTVTEMFRVAQQVANMSYDFLPVYIEAGLIYWCFC
                     WVLFLIQARLEVRFNRFVAK"
     gene            1627..2379
                     /locus_tag="PXE26_001416"
     CDS             1627..2379
                     /locus_tag="PXE26_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDL5593994.1"
                     /translation="MLKIRNIHKTFGNNAILRGIDLDIQKGQVVVILGPSGSGKTTFL
                     RCLNALEMPEQGTLEFSGNAPLKIDFAVKQSKKEILALRRKSGMVFQNYNLFPHKTAL
                     ENVMEGPVFVQQQAVEIAQKNAKALLEKVGLADKAELYPFQLSGGQQQRVGIARALAI
                     QPELMLFDEPTSALDPELVQDVLNTMKELANEGWTMVVVTHEIKFALDVADVVVVMDG
                     GEIVEQGSPQQLFNHPQHERTKRFLNQIRADK"
     gene            complement(2595..3128)
                     /locus_tag="PXE26_001417"
     CDS             complement(2595..3128)
                     /locus_tag="PXE26_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HDL5593995.1"
                     /translation="MEFLAPVISLIVGFLSFVLVLRTWLQFCRVDPRLPISQTLLKIT
                     EPMVSPVGKLIPTVKNICFPALLIAAALVTLQFILFGVDLPRAVLIGLLSVVKTFGQI
                     LFFTTLIRALMSWVTQGNHPLDYTVAQITEPVLGFIRKLLPRTGMLDFSVMVLGFGLL
                     LLNSLFYQIFGGLWAAA"
     gene            complement(3234..3575)
                     /locus_tag="PXE26_001418"
     CDS             complement(3234..3575)
                     /locus_tag="PXE26_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggL family protein"
                     /protein_id="HDL5593996.1"
                     /translation="MAIQRNARQRKKMHLGEYQELGFLIKFTFAEGTGIDQIDETVDR
                     FIDEVIRPNGLALEANGYLNWEGLVCLEKLGKCDESHRQLVKTWLETNGLKEVQVSEL
                     FDIWWDYPAQA"
     gene            complement(3599..4348)
                     /gene="trmB"
                     /locus_tag="PXE26_001419"
     CDS             complement(3599..4348)
                     /gene="trmB"
                     /locus_tag="PXE26_001419"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HDL5593997.1"
                     /translation="MSEKQTFADKKRKTVEQAEFTEDGRYLRKVRSFVLRTGRLSDYQ
                     RDMMNNNWANLGLDYQPMPFNFEQIFGNNNPVVLEIGFGMGKSLVEMAEQNPNRNYIG
                     IEVHTPGVGACIAYALEKGVKNLRVICHDATEILRDSIADGTLGGLQLYFPDPWQKAK
                     HHKRRIVQPEFISRVIRKLSPNGFIHFATDWENYAEHMLEVLRQFESELQNTSATNDF
                     IPRPNFRPLTKFEERGHRLGHGVWDLYFTKK"
     gene            complement(4358..5308)
                     /locus_tag="PXE26_001420"
     CDS             complement(4358..5308)
                     /locus_tag="PXE26_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000288132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HDL5593998.1"
                     /translation="MNSRILATGSYLPTKVRTNADLEKMVDTSDEWIVTRSGIRERRI
                     AEPDETVATMGAKAAQQALEMAGIEANDIDLIVVGTTTNSHAYPSAACQIQGLLQIED
                     AIAFDVAAACTGFVYALTVADQFVRNGQVKKALVIGSDINSRMLDETDRSTVVLFGDG
                     AGAVILEASEELGIISTHLHASPDLENNLTLRSQKRGEERSGFIEMQGNATFKIAVNQ
                     LSSVVEETLEANNLQKSDLDWLIPHQANLRIITATAKKLEMEMDQVVVTLDKYANTSG
                     ATVPVALDEAVRDGRIQRGQLLLLEAFGGGWTWGSVLVKF"
     gene            complement(5454..6473)
                     /gene="hemB"
                     /locus_tag="PXE26_001421"
     CDS             complement(5454..6473)
                     /gene="hemB"
                     /locus_tag="PXE26_001421"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HDL5593999.1"
                     /translation="MQVIQSQYPLRRMRRLRKHDFSRRLVAENQLTVNDLIYPVFVIE
                     GENQRVQVPSMPGVERLTIDQLLVEAAELVKYGVPAVALFPVVGDVKKSLMAEEAYNP
                     QGLAQRAVRALKAQFPELGVITDVALDPFTTHGQDGIIDETGYVLNDVTTEVLVKQAL
                     SHAEAGADIVAPSDMMDGRIGKIREALEQNGFINTQIMAYSAKYASNYYGPFRDAVGS
                     AGNLKGGNKYTYQVDPANGNEGLHEVAMDIQEGADMVMVKPGMPYLDMVWRVKENFGV
                     PTFAYQVSGEYAMHMAAIQNGWLKERECIMEGLLCFKRAGADGILTYFAKRVAKWLYE
                     EAQAK"
     gene            complement(6554..7309)
                     /gene="tatC"
                     /locus_tag="PXE26_001422"
     CDS             complement(6554..7309)
                     /gene="tatC"
                     /locus_tag="PXE26_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HDL5594000.1"
                     /translation="MSQVDESQPLITHLIELRNRLLRSFICVLLVFCGLVYWANDIYT
                     LLATPLTDNLPDGATMIATNVATPFFTPIKLTIVVSVFLSVPFILYQIWAFVAPALYK
                     QEKRLVYPLLVSSTLLFYCGVAFAYYVVFPLVFGFLTSTAPEGVTMATDISSYLDFVL
                     TIFMAFGICFEVPVAIILLCWAGVTTPEDLKAKRPYIIVAAFVIGMLLTPPDIFSQTL
                     LAIPMCLLFEVGVLFARFYRPKDDDEPSEQVAQ"
     gene            complement(7296..7940)
                     /gene="tatB"
                     /locus_tag="PXE26_001423"
     CDS             complement(7296..7940)
                     /gene="tatB"
                     /locus_tag="PXE26_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HDL5594001.1"
                     /translation="MFDIGFSELVLIMIVGLVVLGPKRMPIAIRTVMGWVSTIRGLAA
                     NVQNELAQELKLQELKESIKKAEELNLSSLSPELNKTVEDLKMSATQLQDSLNSAKNE
                     LEKTAAESSTIPKLTDEQVAEIQQKIEQESQVLEAQELQKNAQNKPLEVDSLSEQLNV
                     TRTEKPLSADELAEQAEMDESLLTLESYYPPDDDLATPQSSESAQKSEANNVAS"
     gene            complement(7944..8165)
                     /gene="tatA"
                     /locus_tag="PXE26_001424"
     CDS             complement(7944..8165)
                     /gene="tatA"
                     /locus_tag="PXE26_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HDL5594002.1"
                     /translation="MGGISIWQLLIVVAIIVLLFGTKKLRTLGSDLGESVKGFKKAMA
                     DEKKDAEFEKVEAKDAISAEQKAKEKEQA"
     gene            complement(8276..9913)
                     /gene="ubiB"
                     /locus_tag="PXE26_001425"
     CDS             complement(8276..9913)
                     /gene="ubiB"
                     /locus_tag="PXE26_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HDL5594003.1"
                     /translation="MNIKNLNRFYHIIRTFLRYGIDEAIPNLPITRKIKLGRKALFWV
                     KNQHSDKPYGVRLRLALQELGPVWIKLGQMLATRRDLFAPELADQLALLQDNVEPFDG
                     KIARQIIEQALGGKLETWFENFDETALASASIAQVHTAKFNQNQPLAGKDVVLKVIRP
                     GIEPVIKADLELMYEIAHFIPKLSNDGKRLRAVEVVREYEKTILDELDLRKEMHNAIR
                     LRANFENSEMLYVPEMYQDFCHKNLIAMERIYGIPVSNIAELEANSTDMKLLAERGVQ
                     VFFTQVFRDSFFHADMHAGNIFVNREHPENPQYIGIDCGIVGTLNHNDKRYLAESFVA
                     FFNRDYRRVALMHVESGWTPPDTDIDKFEQAFREVCEPIFAKPLSEISFGHVLLNLFN
                     VAREFNMEVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQTAKPFLQNWLNEQVGVKAMV
                     RDIKQRLPQYREHFAEFPEALFKALQEQKQINFRLAEINESLKAQNSNANSRFLVLSI
                     SAIVICGAFWKFESLPIWLSVPLLTLFPLVLILSQRK"
     gene            complement(9987..10964)
                     /locus_tag="PXE26_001426"
     CDS             complement(9987..10964)
                     /locus_tag="PXE26_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005825116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL5594004.1"
                     /translation="MKQIIAQARENAVRAVDFQRVLMYWHIGKRIFEQEQQGQERADY
                     GTYLIKMLAKELEPEFGSGFCSRQLERYRQFYRAFPIATALRSQLNWTQYRRLIQISD
                     SDKREFYLAESCKNNWSSRQLERQINSSLYERLLLSNDKESVLAVARNEQQPVDPKQL
                     IKDPMVLEFLGLKRESAYYEKDLEQAIITHLQDFLLELGNGFSFIARQKRLHLDGDDF
                     FVDLVCYNRLLQCFVIFEIKTHKLTHQDLGQLQMYVNYFDRVEKLPHENATIGVLLCA
                     DKNDAVVKFSLPENQNKIFASQYQLYLPSEQTLIAEVQKEIENFEQKYP"
     gene            complement(11125..11772)
                     /locus_tag="PXE26_001427"
     CDS             complement(11125..11772)
                     /locus_tag="PXE26_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 sterol-binding domain-containing protein"
                     /protein_id="HDL5594005.1"
                     /translation="MLNNVKQQLMLPQFTFGLIETAFNALLKRSPHIEPNLRKLSGKV
                     LKIALTSPKIDFFVLFSESRTDWLGNYEGEADCTVQLAFDTLPKLADKQKLTELINNK
                     SLVLTGDIQVLQHFTALLEQLEKDPAELLSPFVGDVVAQTSTDLAKKLLGKVKAQFEQ
                     NNQHLVENLIQERPVLVHRLQAVHFYDQVEELAQQALKLEQKFTHYVRSSSHQQS"
     gene            complement(11963..12715)
                     /gene="ubiE"
                     /locus_tag="PXE26_001428"
     CDS             complement(11963..12715)
                     /gene="ubiE"
                     /locus_tag="PXE26_001428"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HDL5594006.1"
                     /translation="MQQSAETTHFGFKTVAKEEKQQLVANVFHSVAGKYDLMNDLLSF
                     GIHRVWKRFTIDCSGVRKGQKVLDLAGGTGDFTAKFSRIVGESGEVILADINSSMLEV
                     GREKLRNLGVVGNVSYVQANAECLPFADNTFDCIVISFGLRNVTDKDKALRSMFRVLK
                     PGGRLLVLEFSKPIIDPISQLYNFYSFNILPKVGEVVVNDAESYRYLAESIRMHPKQD
                     ELKAMMEQTGFESVNYYNLSAGIVALHRGYKF"
     gene            13060..14013
                     /gene="corA"
                     /locus_tag="PXE26_001429"
     CDS             13060..14013
                     /gene="corA"
                     /locus_tag="PXE26_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HDL5594007.1"
                     /translation="MIRAFGLDNACLISVDETNPTLLNDAIWIDLIDPSEAERTVLEN
                     RLDQTLAEERELEDLEASARFFEDEDGLHLHSFFYCLDDDDYADIATVAFTIRDGRLF
                     TLRDRDLPAFRLYRMRSRREKLIDSNAYELLLDLFETKIEQLADVIEEVYADLEKLSR
                     VILNGQQENENFNDALSRLTEFEDASSKVRLCLMDTQRALSFLLRKTRLPNNQLEQAR
                     DIMRDIESLQPHNESLFQKVNFLMQAAMGYINIEQNRIMKFFSVVSVMFLPATLVAST
                     YGMNFEFMPELHFQYGYPMAIGLMIVAASAPYLYFKRKGWL"
BASE COUNT         3966 a         3146 c         2759 g         4142 t
ORIGIN      
        1 taaatttgca aaaaatttat tttaccaatt aaaaggaaat gattatgttg aaaaaattat
       61 caattgctgc attagctctt accctttctg tttctgcatt tgctaaagag agcctacttg
      121 agcgtataaa caacaaaggg actattactg tgggtacgga aggaacttat gccccttaca
      181 cctatcacga tgcgagcggt aaattaaccg gttacgatgt agaagtaacc cgtgcggtgg
      241 ctgaaaaatt agacgtaaaa gtggaattta aagagacaca atgggacgct atgttagccg
      301 gtttaaaagg tgagcgtttt gacttagtgg caaaccaagt ggctttaacc agcccggaac
      361 gtcgagcgac atttgataaa tccgaatctt acagctggga cggtgccgcc ttattagtgc
      421 gtgaagatga aactaaaatc aaaacccctg ctgatgtaaa aggcgtgaaa actgcccaaa
      481 ccttgagctc aaactatggc gagattgccc gtgaaaacgg tgcagacatc gtgccaattg
      541 acggtatggc tcaaggctta ctgttaattc aacaaaaacg cgccgatgca actttcaata
      601 gccacttatc gctattagat tacttgaaaa agaacccgaa ttccggctta aaaattgtgt
      661 gggaaaaaga agaaaaagtg ggtgcaggct taattgcgaa taaaggcaat gacgaagcat
      721 tagcgaaaat cagcaaagca atcgtagaat tacgtgaaga cggcacgtta aaaaaattgg
      781 gcgagcagtt cttcggtaaa gatattagtg tacaataatc catattggat taggcttggg
      841 gcgaattcgc cccttttatt tttaaatctc cctcaaaacg ggagatttta ggtttttcag
      901 atgttaaacg atctacttct ctcaatcccc tttatgaccc aagctcgggt cgatttagtg
      961 ctaagcggtt tttggccgat ggtacaagcg gcatttttag tctctattcc gctggcaatc
     1021 gcctcattta ttatcggtat gttaattgcc gttgcagttg cattagtgcg aattagccct
     1081 gcaacaggct tttttcaccg cttgctactg tggctggtaa aaggttatat ctcgattatt
     1141 cgcggcacgc cgatgttggt tcagatctgt attgtgtttt atggtttgcc tgcaatcggc
     1201 atttttatcg atccgattcc ggcggcaatt atcgggtttt cactcaatat cggggcttat
     1261 ggctcggaaa cgatccgtgc tgcgatctcc tccgtgccaa aaggacaatg ggaagccggt
     1321 tatactatcg gtatgactta tatgcaaact tttcgccgta tcattgcccc gcaagcgttt
     1381 cgagttgctg ttccgccact tagcaacacc tttatcggtc tgtttaaaga tacctctctt
     1441 gcctccgttg ttaccgtaac cgaaatgttc cgggttgctc aacaggtagc aaatatgtct
     1501 tatgacttcc tacctgttta tattgaagcc ggtttgattt attggtgctt ctgctgggtg
     1561 ctatttttaa ttcaggcgag attggaagtc cgctttaacc gatttgtggc gaaataagga
     1621 ggaattgtgc ttaaaattcg caatattcat aaaacctttg gcaacaacgc tattctacgc
     1681 ggcattgatt tagatattca aaaagggcaa gtggtagtaa ttttaggccc ttccggttca
     1741 ggcaaaacca cctttcttcg ttgcttaaat gcactggaaa tgcccgagca aggcacattg
     1801 gaatttagtg gtaatgctcc gctgaaaatt gattttgccg taaaacagag caaaaaagag
     1861 attttagcgc tacgccgcaa atccggtatg gtgttccaaa actacaacct gttcccgcat
     1921 aaaaccgcat tggaaaatgt gatggaagga ccggtatttg tgcaacaaca agcggtcgaa
     1981 attgctcaaa aaaatgcaaa agccctgtta gaaaaagtcg gactggcgga taaagcagaa
     2041 ctctacccgt ttcaactgtc aggcgggcaa cagcaacggg ttggcattgc acgagcatta
     2101 gcaattcagc cggagctgat gttatttgat gaaccaactt cggcacttga tcctgagtta
     2161 gtgcaagacg tgctaaatac gatgaaagaa ctggcaaatg aaggctggac aatggtcgtg
     2221 gttactcacg aaatcaaatt tgcccttgat gttgccgatg tagtggtggt aatggacggc
     2281 ggtgaaatcg ttgaacaagg ctcgccacag caactgttta accacccaca acacgaacga
     2341 actaaacgtt ttttaaatca aatcagagcg gataaataag aaacgatagc gctagcgtcc
     2401 acgctagtgc tatctaataa atggtacaag cggttaatta tgtataaatt gttatactgt
     2461 tttggcacga gcgtggacgc tcgcgccatc gtacagtaaa atcagctaac aaggttcccc
     2521 ataaaggata aataagacaa ggctccttaa tcttttagat taaggagctt atttttagat
     2581 tttagaaatc cgatttaagc cgcagcccat agtccaccaa aaatttggta gaacaagcta
     2641 tttagtagca ataagccgaa acctagcacc attaccgaga aatctaacat tcccgttctt
     2701 ggcaggagct tgcggataaa acctaacacc ggttcggtaa tttgtgctac cgtgtagtct
     2761 aatgggtggt tgccttgagt gacccagctc attaatgcac gaatcaaggt ggtgaaaaat
     2821 agaatttgtc cgaaggtttt gaccacactt aataagccga ttaatactgc tctgggtaaa
     2881 tctacgccaa acagaataaa ctgtaacgtt accaaagcgg cggcaattaa tagtgccgga
     2941 aagcaaatat ttttaacggt tggaatcagc ttgccaaccg gtgaaaccat cggttcggta
     3001 attttaagta aggtttgtga aatcggtaaa cgaggatcaa cccgacaaaa ttgcagccaa
     3061 gttcttagca ccagcacaaa acttaaaaag ccaacaataa gcgaaataac aggagctaaa
     3121 aattccatct ctttttctct ttctatacaa aacaagcggt cgttttttag aaaaaatttg
     3181 caaattttca gtaaaatctg accgcttgta tcttattaaa ttaactaggc aaattaagct
     3241 tgtgctgggt agtcccacca aatatcaaat aattcgctca cttgaacctc ttttaagccg
     3301 ttagtttcta accaagtttt cactaattgg cggtgagatt catcacattt gcctaatttt
     3361 tctaagcaga ctaaaccttc ccagtttaag tagccgttcg cttcaagggc taaaccgttt
     3421 ggtcgaatca cttcatcgat aaaacgatct acggtttcat caatttggtc aatgcctgtg
     3481 ccttcagcaa aggtgaattt aattaagaaa cctaattctt ggtattcacc taagtgcatt
     3541 tttttacgtt ggcgtgcgtt acgttgaata gccatttttt ctctcctcta tgaataaatc
     3601 atttctttgt aaaatataaa tcccacaccc cgtgtcctaa acgatgccct cgctcttcaa
     3661 atttggttag cgggcggaaa ttcggacgtg gaataaaatc attagttgct gatgtatttt
     3721 gcaactcgct ctcaaattgg cgtaatactt caagcatatg ttctgcgtaa ttttcccagt
     3781 cggtggcaaa atgaataaag ccgttagggc ttaattttct gatcacacgg ctgataaatt
     3841 caggctgcac aatacggcgt ttgtggtgtt ttgctttttg ccaagggtct gggaagtaaa
     3901 gctgtaagcc acctaatgta ccgtcagcaa tgctgtctcg caaaatttcg gtggcatcgt
     3961 ggcaaattac tcttaaattc ttcacgcctt tttctaacgc ataagcgata caagccccca
     4021 ccccgggcgt gtgcacctca atgccgatat agttgcgatt cgggttttgc tctgccattt
     4081 ccaccagcga ttttcccatt ccgaagccga tttctaacac taccgggttg ttattgccga
     4141 aaatctgctc aaaattaaag ggcattggct ggtaatctaa gcctaaattt gcccagttgt
     4201 tgttcatcat atcacgttga taatcgctca aacgaccggt acgcaataca aaactccgca
     4261 cttttcgtaa ataacgccca tcttcggtaa actcggcttg ctcaacggtt ttacgttttt
     4321 tatctgcaaa agtctgtttt tctgacattt tcttgcctta aaacttcact aataccgaac
     4381 cccaagtcca gccaccgccg aatgcttcaa ggagtagtaa ttgcccacgt tgaattcgcc
     4441 cgtcacgcac cgcttcatct aatgccaccg gcactgttgc tccactggta ttggcatatt
     4501 tatcaagggt aaccaccact tgatccattt ccatctctaa ttttttcgcc gttgcggtga
     4561 taatgcgtaa attcgcttgg tgcggaatca gccaatctaa atcggatttt tgtagattat
     4621 tcgcttctaa ggtttcttct accacgcttg aaagttggtt tactgcaatt ttaaaggtgg
     4681 cattgccctg catttcaata aagccggaac gctcttcgcc acgcttttgg cttcttaagg
     4741 ttaagttatt ttctaaatcc ggtgaggcgt gcaagtgggt tgaaataata cccagctctt
     4801 cactcgcctc taaaatcacc gccccagctc cgtcaccaaa taatactact gtgctgcggt
     4861 cggtttcgtc taacattctg gaattgatgt ctgaaccaat aaccaatgcc tttttcactt
     4921 gcccgttacg cacgaattga tcggcaacag ttaaagcata cacaaatcct gtacaagccg
     4981 ctgccacatc aaaagcaatc gcgtcttcaa tctgaagcaa gccttgaatt tggcaagctg
     5041 cacttgggta agcgtgggag ttggtagttg ttcccaccac aattaaatca atgtcatttg
     5101 cctcaattcc tgccatttcc agtgcttgtt gagcggcttt tgcccccatt gttgccactg
     5161 tttcgtcagg ctcggcaata cggcgttcac gaatgccgga acgggttacg atccattcat
     5221 cagaggtatc gaccattttt tctaaatcag cattggtacg cacctttgtc ggtaaatagc
     5281 ttcccgttgc taaaattcta ctattcatat ttttattatt ctcaatcaat taaatgataa
     5341 tccgttatta tagcttgaaa accaacaaat atataggctt tacaagcggt catttttagc
     5401 aaaaaagttg cattcacgaa cgattttgca ctagaaccac cgcttgctag tatttatttc
     5461 gcttgagcct cttcgtatag ccacttcgct actcgcttgg cgaaataagt tagaataccg
     5521 tctgctcctg cccgtttaaa gcagagtaat ccctccataa tgcactcacg ctctttcagc
     5581 cagccgtttt ggattgccgc catatgcatc gcgtattcgc ccgaaacttg gtaggcgaag
     5641 gttggcacgc caaaattctc tttcacacgc cacaccatat ccaaataagg catacccggt
     5701 ttcaccatca ccatatctgc cccttcttga atatccatcg ccacttcgtg caagccttcg
     5761 ttgccgttag ccggatcgac ttggtaagtg tatttattac cgccttttaa gttgccggca
     5821 gaacctactg catcacggaa cggtccgtaa taattagacg catatttagc cgaatacgcc
     5881 ataatttgcg tattgataaa accgttttgc tcaagggctt cacgaatttt gccgattcga
     5941 ccgtccatca tatcgctcgg ggcaacaata tccgcccccg cttctgcgtg cgataacgcc
     6001 tgttttacca atacttcagt agtcacatca ttcagtacat agcctgtttc atcaataatg
     6061 ccgtcttgtc cgtgcgtggt aaacgggtct aacgccacat cagtaatcac gcctaattcc
     6121 ggaaattgag cttttaaagc tcgcacggca cgctgtgcca acccttgcgg gttataggcc
     6181 tcttctgcca tcagtgattt tttcacatca cccaccacag ggaaaagagc caccgcaggc
     6241 acgccatatt taaccagttc tgcggcttca actaaaagct ggtcgatagt taaacgctct
     6301 acacccggca tagaaggcac ttgtactcgc tgattttccc cttcgatgac aaaaacaggg
     6361 taaatcaaat cattaacggt aagttgattt tctgccacta agcggcggct gaaatcgtgc
     6421 ttgcgtaaac gacgcatacg gcgtaaagga tattgggatt gaattacttg catttttaat
     6481 ttcctaattc ttaaaatacc tattcttgaa ataagaaagg catagcaaac aggtgctatg
     6541 ccttttcaaa atattactgt gcaacctgct ctgatggttc atcatcatct ttggggcgat
     6601 aaaaccgagc aaatagcaca ccaacttcaa acaataaaca cattggaatt gccaataatg
     6661 tttgcgagaa aatatctggt ggggtgagca acataccaat tacaaatgct gccacaataa
     6721 tataagggcg ttttgccttt aaatcttcgg gtgtggttac gcctgcccaa cataacaaga
     6781 taatcgcaac cggcacttca aagcagatcc cgaatgccat aaaaatggtt aaaacgaaat
     6841 caagatagct actaatatcc gttgccattg ttaccccttc cggagcggta gaggttaaaa
     6901 agccaaatac aagcggaaat acaacataat aggcaaaagc gacaccacaa taaaacagca
     6961 atgtgctaga taccaataat gggtaaacca aacgcttttc ctgcttgtat aaagcagggg
     7021 cgacaaacgc ccaaatttgg tacaaaataa aaggaactga taaaaacacc gaaaccacaa
     7081 tggttaattt aattggggta aaaaacggag tggctacatt ggttgcaatc attgttgcac
     7141 cgtctggtaa attgtccgtt aaaggtgttg ccaataaggt gtaaatatca ttggcccagt
     7201 aaaccaatcc gcaaaacacc aagagcacac agataaaact acgcagtaat cggtttctca
     7261 gctcaattaa atgtgtaatc agaggttgag actcatcaac ttgcgacatt atttgcctcc
     7321 gatttctgcg ctgattctga tgattgaggc gtagctaaat catcatctgg cggatagtaa
     7381 gattccaacg ttaaaagcga ttcgtccatt tctgcttgtt cagccagctc atcagccgaa
     7441 agtggctttt ctgtccgcgt aacattaagt tgctcagata aactatccac ttcaagcggt
     7501 ttattttgcg catttttttg caattcttgc gcctctaaca cctggctttc ttgctcgatt
     7561 ttttgctgaa tttctgcgac ttgctcatcg gttaatttag gaattgtgct gctttccgca
     7621 gccgtttttt ccaactcatt ttttgcagaa ttaagcgaat cttgcaactg ggtggctgac
     7681 attttcagat cttccaccgt tttatttaat tctggcgaaa gggagcttaa attcaactct
     7741 tctgcctttt taatgctctc ttttaattct tgcagtttca gctcttgagc cagttcattt
     7801 tgtacgtttg cggctaaacc tcgaattgta ctcacccagc ccattacggt acgaatcgca
     7861 atcggcatac gtttcgggcc tagcaccacc aagcccacaa tcataatcag tactaattca
     7921 gaaaaaccta tatcaaacac ggattaagcc tgctctttct cttttgcttt ctgctctgct
     7981 gaaattgcat cttttgcttc cactttttca aattcagcat cttttttctc atctgccatt
     8041 gcttttttga agccttttac agattcgccc aaatccgaac ctaaagtacg taatttcttc
     8101 gtaccgaaaa gtaatacgat gattgcaacc acaatcagaa gctgccaaat actaataccg
     8161 cccataaaaa ctcctttcat ttaataggga atagataaaa taaaacgctg tttattatat
     8221 gttactttga catataaaaa agtaattttg caaaaaattt gtcaaaaaca accgcttatt
     8281 tgcgttgact caaaatcaat accagtggaa ataaagttaa taacggcaca cttagccata
     8341 tcggcaaaga ttcaaatttc caaaatgcgc cacagatcac aatcgctgaa attgacagca
     8401 caagaaaacg gctatttgcg tttgaattct gtgcttttaa actttcgtta atttccgcta
     8461 aacggaaatt aatttgcttt tgctcttgta aggctttaaa caatgcctcc ggaaactccg
     8521 caaaatgctc ccgatattgc ggtaaacgtt gcttaatgtc tcgaaccatc gctttcacac
     8581 ctacctgctc attcagccag ttttgtaaaa acggttttgc ggtttgccat aaatccaact
     8641 gtggataaac ctgcctgccc aaaccttcaa tataaagaag tgttttttgc aacaacacca
     8701 actgcggctg cacttccata ttaaattctc ttgccacatt aaacaggttg agcaaaacgt
     8761 gtccgaatga aatttccgat aacggcttag caaaaatcgg ctcacatacc tcacgaaagg
     8821 cttgctcaaa tttatcaata tcggtatccg gcggcgtcca gcccgattcc acgtgcatta
     8881 aggcaacacg gcggtaatct cggttgaaaa atgcgacaaa actttcggct aaatagcgtt
     8941 tgtcattgtg gttcaacgtg ccgacaatcc cgcagtcaat gccgatatat tgcggatttt
     9001 ccgggtgttc tctgttcaca aaaatattgc cggcgtgcat atcggcgtgg aaaaaactgt
     9061 cacggaatac ttgggtaaaa aatacctgca caccacgctc tgccagcaat ttcatatcgg
     9121 tgctgttcgc ttccaactcg gcaatgttag acactggaat gccataaatc cgctccatcg
     9181 caatcaagtt tttatggcaa aaatcttgat acatttcagg cacatacagc atttcgctat
     9241 tttcaaaatt cgcccgaagc cgaatggcat tgtgcatttc tttgcgtaaa tccagctcgt
     9301 ctaaaatagt tttttcgtac tctcgcacca cttcaaccgc ccgtagccgt ttgccgtcat
     9361 tcgataattt cgggataaag tgagcaattt catacatcaa ctctaaatcc gccttaatca
     9421 ccggctcaat gcccgggcga atcactttta acaccacatc tttgcctgca agcggttgat
     9481 tttggttaaa ttttgccgtg tgaacctgtg caatcgaagc agaagctaag gcagtttcat
     9541 caaagttttc aaaccaagtt tcaagctttc cgcccaaagc ctgctcgata atttgacgag
     9601 cgattttgcc gtcaaacggt tcaacattat cttgtagcaa ggcgagctgg tcggcaagct
     9661 ccggtgcaaa cagatcacgt ctggtagcta acatttgccc gagcttgatc caaaccggtc
     9721 caagctcttg caaagccaaa cgtaaacgta caccgtaagg tttgtctgaa tgttgattct
     9781 tcacccaaaa caaagcctta cgccctagct ttattttgcg ggtaattggc agattcggaa
     9841 tggcttcatc aataccatag cgaagaaaag tgcggataat atggtaaaag cggttgagat
     9901 ttttgatgtt cattgaaata tatatttaat ggtaattagg aagattttag caaaattctg
     9961 taaaaattta accgcttgtt gggctactat gggtatttct gctcaaaatt ctcaatttct
    10021 ttctgtactt ccgcaataag tgtttgttca gaggggaggt aaagttggta ttggctggca
    10081 aaaattttat tctgattttc cggtagcgaa aattttacca ccgcatcatt tttatcggca
    10141 caaagcaaga caccaatagt ggcattttcg tgcggcagtt tttcaactcg gtcaaaataa
    10201 ttgacgtaca tctgtaattg ccccaaatct tgatgggtga gcttgtgggt tttaatttca
    10261 aaaatcacaa aacattgaag taaacggttg taacaaacca aatcgacaaa aaaatcatca
    10321 ccgtctaggt gcaaacgctt ttggcgtgcg ataaacgaga aaccgttacc caattctagt
    10381 agaaaatcct gcaaatgcgt aatgatggct tgctctaaat ccttttcgta ataagcactt
    10441 tcccgtttta gtccgagaaa ttccaatacc atcgggtctt taatgagctg tttcggatca
    10501 accggctgct gctcatttct ggcaacagca agcacacttt ccttatcatt actgagcaat
    10561 aatcgctcgt atagactact attaatttgc cgttccagct ggcgtgaact ccaattattc
    10621 ttacaacttt cagccaaata aaattccctt ttgtcagaat cggagatttg aattagacga
    10681 cgatattgtg tccaattcaa ttgcgaccgc agtgcggtcg caattggaaa cgcacgataa
    10741 aactggcgat aacgctctaa ttgacggcta caaaaaccac ttccaaattc tggctcaagc
    10801 tcttttgcga gcattttaat caggtatgtt ccataatcag cacgctcttg cccttgttgc
    10861 tcctgttcaa aaatccgttt tccgatgtgc caatacatca gcacacgttg gaaatctacc
    10921 gcacgaaccg cattttcacg agcttgagca ataatttgtt taatatctta gatcatcgtt
    10981 gtttctatta acataaaagc ctccgttttg gattaagttt atgcttaatc tatccggagg
    11041 caatttcttt cactcaactt ttcgagtcat atcacaattt tattttgtta aatttaattt
    11101 tgcacaaacg cttgcgtttg aacatcagct ttgctgatgg ctcgaagagc gaacgtagtg
    11161 agtaaatttt tgctctaatt tgagcgcttg ttgggcaagt tcttcgactt ggtcatagaa
    11221 atgcaccgcc tgtaaacgat gcaccaacac cggtctttct tggattaaat tctcaaccaa
    11281 atgttgatta ttttgctcaa attgagcttt tactttacct agcaattttt tagcaagatc
    11341 ggtgctagtt tgagccacta catcgccaac aaaaggggaa agcagttcgg cagggtcttt
    11401 ttcgagctgt tcaagtaatg cagtgaaatg ttgcaacact tgaatatcgc ccgtcagcac
    11461 caacgattta ttattaatca gctcggttaa tttttgctta tccgctagtt tcggcagggt
    11521 gtcaaatgcc agttgcaccg tacaatctgc ttccccctcg tagttgccaa gccaatcggt
    11581 tcggctttcg ctaaacaaca caaaaaagtc gattttaggc gaagttaggg cgatttttag
    11641 cacttttccg gacaatttac gcaaattcgg ctcaatatga ggcgagcgtt taagtaacgc
    11701 attaaaagcg gtttcaatca gaccaaaggt aaattgcggg agcattaatt gttgttttac
    11761 attatttaac attcgtacct acttaccctc ttcacttttg ggagaaggat agattgttct
    11821 tcattaagaa gcaaaatcag ggagaggggt atttgcaaaa tattgaataa atatgaccgc
    11881 ttgccccctc tctctgctta tttcgctaaa cgctcataag cggtctctct cccacaaagg
    11941 gagagagtca tttaagagaa aactaaaatt tataacctct gtgtaatgcc acaatgccgg
    12001 cacttaagtt gtagtaattc acgctttcaa agccagtttg ttccatcatt gcttttagct
    12061 cgtcttgttt cgggtgcatt cggatcgatt cagctaaata gcggtaactt tcggcgtcat
    12121 ttaccaccac ttcgcccact ttcggcaaaa tattgaatga gtagaaatta taaagctggc
    12181 tgattgggtc gataatcggt tttgagaatt ccaacacaag taagcgaccg cccggtttta
    12241 gcacgcggaa cattgaacgt agggctttgt ctttgtcggt aacattacgc aagccaaaac
    12301 taatcacaat acaatcaaaa gtgttatcag caaaaggcaa gcattcggca ttcgcttgaa
    12361 cgtagctcac atttccaacc acgcctaaat tgcgtaattt ttcccgcccg acttccaaca
    12421 ttgagctgtt aatatcggct aaaatcacct caccactttc accaacaatg cgagagaatt
    12481 ttgcggtaaa atcacccgtg ccgccggcaa gatccagcac tttttgccct ttacgcacgc
    12541 cactgcaatc aatggtaaag cgtttccaca ctcgatgaat gccgaaagaa agcaaatcgt
    12601 tcattaggtc atatttgcct gccaccgagt gaaacacatt tgcgaccagt tgctgttttt
    12661 cttctttcgc tacggtttta aacccaaagt gggtggtttc tgccgattgt tgcacttctt
    12721 gttgcacttc atctttaggt gctaattgtt ctacatcgct cattttcttg tctctagttg
    12781 caaaatttag gcgtaaccat agcaaaaaag cggtcgtttt tctttaactt tttgcaaatt
    12841 ttcttaagta aataaccgct ttcttgacta gaaaagccaa attctgtaac attcgcacac
    12901 tattttttct tgaggattac acattttgga cagtcatagt cgatacttac ccgtttaacc
    12961 tatcttgtct aacctcaatg ttaccgacaa ggtcggtaat gctcgcctag tatctttgtt
    13021 cctttttgtt ccaagcctcc taactatttg gagctaaaca tgatccgtgc ttttggacta
    13081 gataacgcat gtttaatcag cgttgatgaa actaacccaa ctttattaaa tgatgcgatt
    13141 tggattgatc tcatcgatcc atcagaagct gaacgaaccg tattagaaaa ccgcttagac
    13201 caaacactcg ctgaagaacg tgaattggaa gacttagagg cgtctgcccg tttctttgaa
    13261 gatgaagacg gtttgcacct gcactcgttc ttttactgct tagatgatga cgattacgcc
    13321 gatattgcca ctgtcgcctt cactattcgt gacgggcgtt tgtttacctt gcgtgatcgg
    13381 gatttacccg catttcgctt gtatcgaatg cgttcccgcc gtgagaaatt gattgacagc
    13441 aacgcctatg aactcttact cgatttattt gagaccaaaa tcgagcagct tgcagacgta
    13501 attgaagaag tctatgctga cttagaaaaa ttaagtcggg ttattctaaa cggtcagcaa
    13561 gaaaatgaga atttcaatga tgccctttct cgcttaactg aatttgaaga tgcaagttca
    13621 aaagtgcgtt tatgtttgat ggatacgcaa cgggcgttaa gtttcttact gcgtaaaacc
    13681 cgtttgccga ataatcagct agaacaagcc cgtgacatta tgcgagatat tgaatctctg
    13741 caaccgcaca atgaatcctt gttccaaaaa gtgaattttt taatgcaagc ggcaatgggt
    13801 tatatcaata ttgagcagaa ccgaattatg aaattcttct cggtggtgtc agtgatgttc
    13861 ctacctgcta cgctggttgc ttctacttac ggtatgaact ttgaatttat gccggaactt
    13921 catttccaat atggctaccc tatggcgatt ggtttaatga ttgttgccgc ctccgcccct
    13981 tatctttatt ttaaacgtaa aggttggtta taa
//
LOCUS       DANLZD010000067        14005 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.067, whole genome shotgun sequence.
ACCESSION   DANLZD010000067 DANLZD010000000
VERSION     DANLZD010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14005)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14005)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14005
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.067"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(48..767)
                     /locus_tag="PXE26_001430"
     CDS             complement(48..767)
                     /locus_tag="PXE26_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253715.1"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HDL5594008.1"
                     /translation="MKLKNFLTILPLAVATAVTSAETHTVEHKDKPASFNFSTEVSRT
                     VEKDVMQASVYSQKSGNSLPELKKFVSENLNRVLAEAKKHPSIEVQAEGVTNHVNYNN
                     KGNIDGWDTSGSIQLKSKDFDAMAAVLENLGKDVAIRYIDFSVSPEKMASLEDEMTLE
                     IISKFQHKADVIQKALGAKTYKLVNINIQTPNDGGRPYYEHRAMYAVSSMAQSKSMDE
                     IPLEAGKTTISATASGSVEFE"
     gene            complement(825..1562)
                     /gene="tsaA"
                     /locus_tag="PXE26_001431"
     CDS             complement(825..1562)
                     /gene="tsaA"
                     /locus_tag="PXE26_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HDL5594009.1"
                     /translation="MNSTSNQLTPIQLNPIGFVESPYDEKFSVPRQPNLVAEGKGILR
                     LIPPYNTPDAVRGLEKFSHIWLIFQFHHIPEREWHATVRPPRLGGNERVGVFASRATH
                     RPNPLGLSKVKLEAVVAGGSEVYLKLGSVDLVNGTPIFDIKPYIAFADSEPQAVSGFA
                     QQKPQARLAVRFSEEAKQAVEFCRNFAKFGIEQPLSFLADVIAQDPRPAYQQGKPSER
                     VYGMNLAGYNIRWQIENDTQAIVLSIE"
     gene            1742..2650
                     /locus_tag="PXE26_001432"
     CDS             1742..2650
                     /locus_tag="PXE26_001432"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HDL5594010.1"
                     /translation="MNKNSLFSIWFTTARPKTLPLALASIIVGSALAHWAGKFDVVTT
                     LLAFITTILLQILSNFANDYGDHVKGSDTKERIGPLRAIQHGVIGGEQLKKAVIILSL
                     LSFVSGVALSAYAFETVQDLFFFIGLGIVSIIAAITYTVGKKAYGYLGLGDLFVLIFF
                     GFVAVIGVFYLQAHSLPIMILLPAFGCGLLSVAVLNINNLRDINQDRQAGKNTLIVRI
                     GSQNGRKYHVALLVLAVISYLIFAISEFEHWYSFIFLLSVPLLAKHARFVYQHKDPKE
                     LYPILGQMAGLALLTNLLFSLGIVLG"
     gene            complement(2726..3712)
                     /locus_tag="PXE26_001433"
     CDS             complement(2726..3712)
                     /locus_tag="PXE26_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3298 domain-containing protein"
                     /protein_id="HDL5594011.1"
                     /translation="MKKSLLALLIGSVFLISACEDGKMTQTVLEAEKQIVQLGTELKN
                     AQADLAKKEAEVAELSGVKAENEKLKSELENAQQNTALNVEIVKIFDKKEVIKHQVDP
                     KQEFAIEESTVSAFVSLPKTNFDWLNQLLINQAYDYNEEQGRKLKNPTEEEFKKHREA
                     VYQGLVESVKTEPAIGYDDHISSAFIGQRNNIATFTMMHYTYMGGAHGMHYTQYINVD
                     LAKKAIIGLNDLISPKNQVQLKDILWENYSSVRVDENGNYNGFADKKEFRISDQFYFT
                     PHGIAFVYPPYELGAYAEGDIEVEADWYIINKLLNSEYQRGEKDGFFEELDN"
     gene            complement(3806..5677)
                     /gene="rpoD"
                     /locus_tag="PXE26_001434"
     CDS             complement(3806..5677)
                     /gene="rpoD"
                     /locus_tag="PXE26_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HDL5594012.1"
                     /translation="MENQADQQLEQQSQLELLISQGREQGYLTLSEVHDHLPEELVDA
                     EQIEDIIQMINDMGIQVLEAAPDADDLLLAENIADEDVVEEATKVLSTVESELGRTTD
                     PVRMYMREMGTVELLTREGEIDIAKRIEEGINEVQCAIAEYPEALSGLLACYAQVETG
                     EMRLSDLVTAFVDPNILEEAPLEDIEAALGEDEESSDVPDVDDENEDENGDSSSDSSD
                     DSSIDPELAREKFEALRSQHEKVLLVIQKHGRTSKKSKEQIEILSHIFREFRLVPKQF
                     DLLVASMQKLMKQVRTEERQIQRYAVEYAGMKKADFLKAFQGHELSEAWIEKAINAKK
                     NAAPKLANYVDNIRVNIANLQNLEQTSGLTIAQIREIGGRISNGELKARRAKKEMVEA
                     NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT
                     RSIADQARTIRIPVHMIETINKLNRISRQCLQEMGREATPEELAERMGMPEDKIRKVL
                     KIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSATAESLRMATNEVLEGLTPREA
                     KVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLDD"
     gene            complement(5936..7684)
                     /gene="dnaG"
                     /locus_tag="PXE26_001435"
     CDS             complement(5936..7684)
                     /gene="dnaG"
                     /locus_tag="PXE26_001435"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDL5594013.1"
                     /translation="MKGTIPRSFIDDLIARTDIVEVINSRVKLKKAGRDYQACCPFHH
                     EKTPSFSVSQSKQFYHCFGCGVHGNVITFLMDYDKLEFPEAIEELAAMHGLEVPRENV
                     IQRDGKPQANFKTKRNLYELMEAVAKFYQQNLSHQIEPQSYLQQRGLSEEIIERFEIG
                     FAPNAFDAALRTFGQSQEDIQKLLDTGVLTKNDSGRIYDKFRNRVMLPIRDKRGRVIA
                     FGGRVLPNDEQGAKYMNSPETVIYHKGSELYGLYQALKVNETPDYLFVVEGYMDVVAL
                     AQFGVDNAVASLGTATTGEQIQQMFRCTEQIVCCYDGDRAGRDAAWRALENALPYLQD
                     GRQLKFIFLPDGEDPDTFVRSQGKEGFEQYVAQNAKPLSDFLFDSLLADVDLSSKEGK
                     SKLAALAVPLINRIPGEMLRVYLRNILGQKLGILDPTQIEALLPTKKAAEKPLHQAVK
                     MKRTPMRLLIALLIQNPYFVKFVPDVSALASLKDPGFTLLTDIVATCQQNAGISMGGL
                     LEHYREDPQYKIVEALANWDHLELPENIERTFIDTLDFLYAKLVELRKEELIAKDRTV
                     GLTDDEKKEYALLMFQ"
     gene            complement(7838..8053)
                     /gene="rpsU"
                     /locus_tag="PXE26_001436"
     CDS             complement(7838..8053)
                     /gene="rpsU"
                     /locus_tag="PXE26_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005701713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HDL5594014.1"
                     /translation="MPVIKVRENESFDVALRRFKRSCEKAGILAEVRAREFYEKPTTI
                     RKREKASLAKRHAKRNFRENARNTRLY"
     gene            complement(8201..8797)
                     /locus_tag="PXE26_001437"
     CDS             complement(8201..8797)
                     /locus_tag="PXE26_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HDL5594015.1"
                     /translation="MSLLPMNEITSLNQLDLQKSYSYADYLLWKFKERVEIIKGKIVA
                     MSPAPTRFHQRISMKMTAKFLEVFDNHQCQIYSAPFDVRFPDENGKVKTVVQPDLCVI
                     CDVSKLDERGCVGAPDLVVEILSPGNTKREMKDKYELYQEQGVKEYWIVSPETRTIQI
                     FVLENGKYIGIQPVAEDEPATSVVFPALSFSTEKLFEL"
     gene            8939..10195
                     /locus_tag="PXE26_001438"
     CDS             8939..10195
                     /locus_tag="PXE26_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HDL5594016.1"
                     /translation="MHLNFKKIDNSHIALFYNVLVATFFVTVLTFKKGYSYVPMALGI
                     IATLSFLFYRFKLKQKWLLDKEDKFFIFSLIGYFLTFAMSAIFNGDGIREIDNPIQIL
                     LLIPLIILFRLYPIKKETVLHFIPIGALVAGCIAIYQRFILNLKFPFPEIMRIQSGNI
                     AILLSLFSIAIAFYWLSKKRIKTGIAYLVFAMFGLFASILTGARGGWLAFIPICFFIL
                     FLNLRQLNKKAIFLILLALISSLSFFISKPEFGIQKRYNAAKNDIIVFLEKGNRHSSL
                     GARFDMWENALIGIREKPLLGHGSTGYETFKKKQIETKQMAKTTLRFNSLHNQYLEAF
                     VKRGVVGFMALMAILIIPFVIFAKRLKAKNREVKCMAILGIVHIISHSFFFLSQSFLA
                     HNSGSLFYFFVLILLYHLVKQNEEII"
     gene            complement(10297..11304)
                     /gene="rfbB"
                     /locus_tag="PXE26_001439"
     CDS             complement(10297..11304)
                     /gene="rfbB"
                     /locus_tag="PXE26_001439"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HDL5594017.1"
                     /translation="MIILITGGAGFIGSALVRYLIEHTPHTVINVDKLTYAGNLASLE
                     SVAHHERYHFEKADICASGQISEIFGKYQPDVVMHLAAESHVDRSISGAADFIQTNIV
                     GTYTLLEAARAYWDTLPEPRKSAFRFLHISTDEVYGDLAKSEELFTEKTPYNPSSPYS
                     ASKAASDHLARAWHRTYGLPTVITNCSNNYGAYQYPEKLIPLMILNALEGKSLPVYGN
                     GLQVRDWLFVEDHIRALYLVLQKGQIGETYNIGGHNEKTNIEVVRSICSILQEMVPNN
                     PLVVGQYADLITYVQDRPGHDFRYAIDTSKIEKELDWKPKETFESGLRKTVEWYLANR
                     N"
     gene            complement(11301..11882)
                     /locus_tag="PXE26_001440"
     CDS             complement(11301..11882)
                     /locus_tag="PXE26_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase"
                     /protein_id="HDL5594018.1"
                     /translation="MLEKIEKLIDEINKLHLAFSKDYFETGKIEKVNLKHTFAKVPTP
                     HILAYRLNLHESINDYLYRADLEGISYFYRVKTSESILDKIERFKQRSEGYPVNSILN
                     DIFGARIIVSSEVIQQVMESLDYWQEKYGLKNWYLRDKDEYVGIHIYFKNSSNFYYPW
                     ELQIWDKKDAEKNIQSHIKYKRNFVNQISYSPL"
     gene            complement(11903..13174)
                     /locus_tag="PXE26_001441"
     CDS             complement(11903..13174)
                     /locus_tag="PXE26_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDL5594019.1"
                     /translation="MSIQQKKRHSRWYERIFFSTAVQSILGVMFSSVLPAIYFWGEKF
                     NSIETRSNTIIATSLAFVMIAISLRVLMKYPGNKSASFVFSTVISWYAVLLIVLTIFR
                     FDYSNTLLGTSFILTILFCFIGYFLSRSWIIPKIALVPFGRAINLNRIQNVEWIQLSE
                     PILGEKRINSIAVDLHYPDLSAEWHKFLAKCTLNGIPVYNVRQLEESLTGRVKIRHMY
                     ENDLGSLLPSPIYSLVKRIIDIALIVATFPITLPIMTITAIAIRLESEGGAMFIQKRV
                     GQGGKEFNIYKFRSMCKDSEKDDAQFASSADMRVTRIGKFIRKTRIDELPQFFNVLKG
                     DMSLIGPRPEQTAFVDKFEEEIPFYNYRHIVKPGISGWAQVVQGYAADVDDTKVKVEH
                     DFYYIKHFSLWLDILIIFKTLKTMLTGFGAR"
     gene            complement(13178..13986)
                     /locus_tag="PXE26_001442"
                     /pseudo
     CDS             complement(13178..13986)
                     /locus_tag="PXE26_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_162680708.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
BASE COUNT         4075 a         2996 c         2485 g         4449 t
ORIGIN      
        1 tcctccaatt aaagtaaaaa tacaactcta tacaaatcta tacatttcta ttcaaattcc
       61 acacttcctg aagcggtagc tgaaattgtg gttttacctg cttctaacgg gatttcatcc
      121 atagatttgc tttgtgccat tgatgaaact gcatacattg ctctgtgttc ataatatggt
      181 ctaccaccat catttggagt ttgaatattg atattaacta gcttatatgt tttcgcccct
      241 aaggcttttt gaatcacatc ggctttatgc tgaaatttgc tgataatttc cagcgtcatt
      301 tcatcttcaa gggacgccat tttctctggc gatacactaa aatcaatgta acgaatcgcc
      361 acatctttac ctaaattttc caacaccgct gccattgcat caaaatcttt gcttttcaac
      421 tgaatgctac cagaggtatc ccaaccatca atattccctt tgttgttata attaacgtga
      481 ttagtcacac cttcagcttg tacttcaatc gatggatgtt tttttgcctc agccaataca
      541 cgattcaggt tttcagatac aaattttttc agctccggca aggagttacc tgatttttgg
      601 ctatacacac ttgcctgcat cacgtccttt tccaccgtgc gagagacttc ggttgagaaa
      661 ttaaaagaag ccggtttatc tttatgttcc acggtatgag tttccgctga agttaccgct
      721 gttgcgactg caagcggtag aatggtaaga aaatttttca atttcataat cagtccttaa
      781 aagggttaaa aatcatttct tagatctcac ttgcgtagga aagttcattc aatcgaaagc
      841 acaatcgcct gtgtatcatt ttcaatttgc cagcgaatat tgtagccggc aaggttcata
      901 ccataaactc gctcactagg tttcccttgt tgatacgccg ggcgagggtc ttgggcgatg
      961 acatcggcaa gaaaactaag cggctgttcg atgccaaatt ttgcaaaatt tcggcaaaat
     1021 tcgacagctt gttttgcctc ctcgctaaaa cgcaccgcta atcttgcttg tggtttttgc
     1081 tgagcaaaac cggaaaccgc ttgcggctcg ctatctgcaa atgcaatgta aggcttgatg
     1141 tcaaaaattg gtgtgccgtt aactaaatcc acgctgccta atttcaaata aacttcactc
     1201 ccccccgcca ctaccgcttc taacttcact ttcgataagc caagcggatt cggacgatgg
     1261 gtggcacggc tggcaaagac cccgacccgt tcgttcccgc ccaagcgagg cggtctgacg
     1321 gtggcgtgcc actctctttc gggaatgtga tggaattgga aaatcaacca aatatgacta
     1381 aatttctcca agcctctgac tgcatcgggg gtattgtaag gcggaattaa acgtagaatg
     1441 cctttcccct ccgctaccaa attcggctgg cgaggcacgg aaaatttttc atcatagggg
     1501 ctttccacaa aaccgatagg gtttaattga atcggggtta gttgatttga ggtagagttc
     1561 attacgcttt tttctgttaa aataatataa aatattggac ataatgatat gaaattgagg
     1621 atggtgcaag cgtccacgct tgtaccaatt cgttttacca tttaacacaa gagtggacgc
     1681 ttgcactatc gcttaaatcc ttaacatcat tgtaaatgaa attacgctaa gattattctc
     1741 tatgaacaaa aattctctct tttcgatttg gtttaccacc gctcgcccga aaactttacc
     1801 gctggcgtta gcttcaatta ttgtgggttc agcacttgct cattgggcag ggaaatttga
     1861 tgttgttacc accttactcg catttatcac caccattttg ttgcagatcc tgtctaactt
     1921 cgccaatgat tacggcgacc acgtcaaagg ctctgacacc aaagaacgaa tcggaccgct
     1981 acgggcgatt caacacggtg ttattggcgg tgaacaactt aagaaagccg tgattatctt
     2041 aagcctactc tcgtttgttt ccggtgttgc cttaagtgcc tatgcttttg aaacagtgca
     2101 ggatctgttt ttctttatcg ggcttggcat cgtctcaatt attgccgcca ttacttacac
     2161 cgtcggcaaa aaagcctacg gctatttggg gctgggcgat ctatttgtgc tgattttctt
     2221 tggctttgta gcggtaatcg gcgtgttcta cttgcaggct catagcctac ctataatgat
     2281 tctgctccct gctttcggtt gcggattgct gtctgtagca gtgttaaata tcaataactt
     2341 gcgtgatatt aaccaagacc gacaagctgg gaaaaacact ctcattgtac gaatcggtag
     2401 ccaaaacggg cgaaaatacc acgttgcatt gttagtgcta gcggtcattt cttatctgat
     2461 ttttgcaatt tctgaatttg aacattggta tagcttcatt tttttgctgt ctgtaccgtt
     2521 actggcaaaa cacgctcgtt ttgtctatca gcataaagac ccaaaagaac tctacccaat
     2581 tctagggcaa atggcagggc tggcgttgct cactaatcta ttatttagtt tgggcattgt
     2641 gttagggtaa gttgcaaaat tttaacaaaa ctaaaccgct tgtaataaag gattacaagc
     2701 ggttgttttt tatctaaatt tacaattagt tatctagttc ttcaaagaat ccatcttttt
     2761 cgccacgttg atactccgaa ttgagcaact tattaataat gtaccaatcc gcttcaacct
     2821 ctatatcgcc ttctgcataa gcacctaatt cgtatggcgg ataaacaaaa gcaatgccgt
     2881 gaggggtaaa gtagaattgg tcagaaatac ggaactcttt tttatcagca aatccattat
     2941 agttgccatt ttcatccaca cgcacgctac tgtaattttc ccaaagaatg tctttcagtt
     3001 gaacttgatt ttttgggctg attaaatcat ttaagccaat gattgctttt ttagctaaat
     3061 ctacattgat atattgcgta tagtgcatac cgtgagcccc acccatatag gtgtaatgca
     3121 tcatagtgaa tgtagcaata ttattgcgtt gcccgataaa agcactggaa atatgatcat
     3181 catagccaat agctggctcg gttttcacac tttctaccaa cccttgataa accgcttcac
     3241 gatgcttttt aaactcttct tcggttggat ttttcagctt tctgccttgt tcttcattgt
     3301 aatcataggc ctgattaatc aaaagctggt taagccaatc aaaattggtt tttggtagag
     3361 acacaaacgc acttactgta ctttcttcta ttgcaaattc ttgtttcgga tcaacttggt
     3421 gcttaatcac ctctttctta tcaaagattt tcacaatttc aacatttaac gctgtgtttt
     3481 gctgagcgtt ctctaactct gattttaatt tttcattttc tgctttcacc cctgaaagtt
     3541 ctgcaacttc agcctctttt tttgctaaat cagcctgagc attttttaat tctgtgccta
     3601 actgaacaat ttgtttttcg gcttctaata ccgtttgggt cattttgccg tcttcacaag
     3661 ctgaaatcag aaatactgag ccaattaaaa gtgctaatag tgattttttc atctctccct
     3721 cttttgtaaa aaatacggta aatatcaccg cttgttatac agattaaaac aaaatcccct
     3781 ataccatcag gcatagggga aatgattagt cgtctaagaa actgcgtaag gtttccgaac
     3841 ggctcgggtg gcgaagtttg cgcagtgctt tcgcctcaat ttggcggata cgttcacgag
     3901 ttacgtcaaa ttgtttacca acttcttcga gtgtgtggtc tgtgttcata tcaataccaa
     3961 aacgcatacg caacactttc gcttcacgcg gggttaagcc ctctaacact tcgttcgttg
     4021 ccatacgcag gctctccgca gtggcggaat ccaatggtaa ttcaaggctt tcgtcttgaa
     4081 tgaaatcacc taaatgtgaa tcgtcatcgt caccgattgg tgtttccatt gaaatcggct
     4141 ctttggcaat tttcaatact ttgcggattt tatcttccgg cattcccata cgttctgcca
     4201 gttcttccgg cgttgcctca cgccccattt cttgtaaaca ttggcgtgaa atacggttga
     4261 gtttgttgat agtttcaatc atatgcaccg gaatacgaat tgtacgggct tggtcagcaa
     4321 tcgaacgggt aatcgcttga cgaatccacc aagttgcata agtcgagaat ttataaccac
     4381 ggcggtattc aaatttatcc accgctttca ttaaaccgat gtttccttct tggattaaat
     4441 ctaagaactg caagccacgg ttagtgtatt ttttcgcaat cgaaatcacc aaacgtaagt
     4501 tagcttccac catctctttt ttcgcacggc gggcttttaa ctcaccattg gaaatacgcc
     4561 cgccaatttc acgaatttga gcaatggtta agcctgatgt ttgctctaaa ttctgtaagt
     4621 tagcaatatt gacacggata ttatccacat aattagctaa tttcggtgct gcatttttct
     4681 tggcattaat cgctttttca atccacgctt cgcttaattc gtgcccttgg aatgctttca
     4741 agaaatccgc ttttttcatg ccggcatatt ccactgcata gcgttgaatt tgacgttctt
     4801 cagtgcgaac ctgcttcatc agtttttgca tagaagcaac caataagtca aattgcttcg
     4861 gcaccaaacg gaattcacgg aaaatatgag ataaaatttc aatttgctct ttcgattttt
     4921 tactggttcg cccgtgtttt tgaatgacca ataacacttt ttcatgttgg ctgcgtaggg
     4981 cttcaaattt ttcacgggca agttccgggt caattgagct gtcatcactg ctgtctgaac
     5041 tgctatcacc gttttcatct tcgttttcgt catctacatc aggcacatca gaagattctt
     5101 catcttcacc taaagcagcc tcaatatcct ctaacggtgc ttcttctaaa atattaggat
     5161 cgacaaatgc tgtcactaaa tcagaaaggc gcatttcacc ggtttcgact tgagcatagc
     5221 aggctaacag gccacttaag gcttccggat attccgcaat cgcacattga acttcgttaa
     5281 tcccttcttc aatgcgttta gcgatatcaa tctcaccttc acgggttaaa agctcaactg
     5341 tccccatctc acgcatatac atacgcacag ggtcagtagt tctacctaac tctgattcta
     5401 cggttgaaag cactttggtg gcttcttcta ccacatcttc atcggcgata ttttcagcga
     5461 gtagtaaatc atccgcatca ggggcagcct ctaaaacttg gatacccata tcgttgatca
     5521 tctgaataat atcttcgatc tgctccgcat ccaccaactc ttccggtaag tggtcgtgca
     5581 cttcagaaag cgttaaatat ccctgttcac gcccttgact gatcagaagt tctaattgag
     5641 attgctgttc taattgttga tctgcttggt tttccatagt ctatccgttt attatgcgag
     5701 caaaaatagt agtggattat accactaaat ttggttcgac ttcataaatt cacaaaaaaa
     5761 ttctattttt ctaatttaca cattactttg atgcttatga gaacagagag gtgtagcaag
     5821 agagataaat aactttcttt ttagatagaa ttaattattt tcttcgttca tcacttctgc
     5881 caaatctccc ctaacccctc tttgctaaag aggggaatta ttcgagctta aaattctact
     5941 gaaacatcaa aagagcatac tcttttttct catcatcggt taagcccacg gttcggtctt
     6001 tggcaattag ctcttctttg cgtaattcca ctaatttggc gtagagaaaa tcgagagtgt
     6061 caataaatgt tcgttcgata ttttcgggta actctaaatg atcccaattt gcgagggctt
     6121 caacaatctt atattgggga tcttcccgat aatgttcaag tagcccgccc atactgatac
     6181 ctgcattttg ctgacaagtt gcgacaatat cggttaataa tgtaaagcca ggatctttca
     6241 aggaggctaa agcacttaca tcgggtacga atttcacaaa atacggattt tgaatcaata
     6301 acgcaatcaa cagccgcatt ggcgtacgtt tcattttgac cgcttgatgt aaaggcttct
     6361 ctgccgcttt tttcgtcggt aacagagctt ctatctgcgt tgggtctaaa atgcctaatt
     6421 tctgtcctaa aatattgcgt aaatacactc gcagcatctc gcccggaata cgattaatta
     6481 acggcacagc taaagcagcg agcttggatt ttccctcttt tgaagagaga tccacatccg
     6541 ccagcaaact gtcaaataag aaatcgctta atggcttggc attctgtgcc acgtactgct
     6601 caaatccttc tttaccttga gaacgaacaa aggtgtccgg gtcttcgcca tcgggcaaga
     6661 aaataaattt cagttggcga ccgtcttgca aataaggcaa cgcattttct aacgcccgcc
     6721 aagctgcatc tcgaccggct ctatcgccat cataacaaca gacaatttgc tcggtgcaac
     6781 gaaacatttg ctgaatttgt tcaccggtag ttgccgtgcc taaagaggcg actgcattgt
     6841 ccacgccgaa ttgggcaagg gcgaccacgt ccatatagcc ttccaccacg aacagataat
     6901 ccggcgtttc attgactttc agtgcttgat acaagccata taactcactg cctttatgat
     6961 aaatcaccgt ttcgggcgag ttcatatatt tcgccccttg ctcatcattc ggcaacaccc
     7021 gcccaccaaa ggcaattacc cgtccacgct tatctcgaat cggtaacatt acccgattgc
     7081 gaaatttatc gtaaattcga ccgctatcat ttttggttaa aacgcccgta tcgagcaatt
     7141 tctgaatatc ttcttgtgat tgcccaaaag tgcgtagggc tgcatcaaag gcattcggag
     7201 caaaaccaat ttcaaagcgt tcgataatct cttcagacaa acctcgttgc tgtaaatagc
     7261 tttgtggctc aatctggtgc gataaattct gctggtagaa cttcgccacc gcttccatca
     7321 attcataaag attacgctta gttttaaaat tagcttgagg cttgccgtca cgttgaatca
     7381 cattctctct cggtacttcc agcccgtgca tagctgccag ttcttcaatc gcttccggaa
     7441 attcgagttt gtcataatcc atcaaaaagg tgatgacatt gccgtgtacg ccacagccga
     7501 aacaatggta aaactgtttt gattggctta ccgaaaagga aggggttttc tcgtgatgaa
     7561 aaggacagca ggcttgataa tctcgcccag cctttttgag tttgacccga ctgttgatga
     7621 cctcaacaat atcggtgcga gcgataagat catcaataaa tgaacgtgga attgtgcctt
     7681 tcattgattt cctcctgctc tttgaatgat acaagcggag caattttgca aattttttgc
     7741 aaaaaacaac cgcttgaaat agaaacgtta aaaacaccaa aaccgtgagc ctaacggaat
     7801 cacggtttcg atatagtttg ctaaccagcc taactaatta gtataaacgt gtgttacgtg
     7861 cgttctcacg gaaattacgt ttagcgtgac gtttagcaag tgatgctttt tcacgtttac
     7921 gaattgtagt tggtttttcg tagaattcac gagcacgaac ttcagctaag atacccgctt
     7981 tttcgcaaga gcgtttgaaa cgacgtaatg ctacgtcaaa tgattcattt tcacgaactt
     8041 taattactgg catatgccat cacctcagaa aaatatgatt aaattaaacc gcacacaatt
     8101 ttggcggcat agaacaaaaa aggtagtgca ttctacctta agcactcaca taagtaaagt
     8161 agtattgtgg cataaaaccg ccgtattatg ttgcattttt ctacagttcg aataatttct
     8221 cggtcgaaaa acttaatgcc ggaaagacca ccgaagttgc cggttcatct tctgccaccg
     8281 gctgaatacc gatatattta ccgttttcca acacaaaaat ctgaatagtg cgggtttcgg
     8341 gagaaacaat ccaatactct ttcacccctt gttcctggta aagctcgtat ttatctttca
     8401 tctccctttt ggtattaccc ggagaaagga tttccaccac taaatccggt gcccctacac
     8461 agcctctttc atctaactta ctgacatcac aaattacaca aagatcaggc tgcactacag
     8521 ttttgacttt tccgttttca tcgggaaacc gaacgtcaaa aggcgcagaa taaatctggc
     8581 attggtgatt gtcaaaaacc tctaaaaatt ttgctgtcat cttcatagaa attcgctgat
     8641 gaaaacgagt aggagccgga gacatcgcca caattttccc tttgataatc tcaacccgct
     8701 ctttaaattt ccatagcaaa taatcagcgt aactgtaact tttttgtaag tccagttgat
     8761 ttaagctggt aatttcgttc attggtaata agctcatacc gcctccttta tcagaaatat
     8821 aaagatatta tgccgaataa tccctcaaat tcaacaaaac tttcgctaaa aagagataga
     8881 taacctttat acccttagta taaaatgaca gcaattttca ttgttttagg atatgtcgat
     8941 gcaccttaac ttcaaaaaaa tagacaactc acatattgct cttttctata atgtactagt
     9001 cgccacattt tttgtcactg ttttaacctt taagaaaggt tatagttatg tgccaatggc
     9061 attaggtatt atcgctacac ttagtttctt attttatcgt ttcaaattaa aacaaaagtg
     9121 gttacttgat aaagaggata aattttttat tttctcgctt attggctatt ttctaacgtt
     9181 tgcaatgtct gctattttta atggcgatgg cattcgtgaa attgataatc ctatccagat
     9241 tttattgctt atccctttaa tcatcctctt tagactttac ccgattaaaa aagaaactgt
     9301 attgcacttt ataccgattg gagcgttggt agctggttgt atagcaatat atcagaggtt
     9361 tatattaaat cttaaatttc ctttccctga aataatgcgt attcaatcgg ggaacatagc
     9421 aatattatta tcactattta gtatagcaat tgccttttat tggctttcaa aaaaaagaat
     9481 taaaactggc attgcctacc tggtttttgc catgtttggg ttatttgcca gtattctaac
     9541 aggagcaaga ggcggctggc ttgcattcat tcccatttgc ttttttatcc tatttttaaa
     9601 tttaagacag ctaaataaga aagctatttt cctgattcta ttagcactta tatcttcact
     9661 ctcatttttt atctccaaac cagaatttgg catacaaaaa cgatataatg cagctaagaa
     9721 tgatattatc gtatttttag aaaaaggaaa tagacattca tctctgggag ctcgttttga
     9781 tatgtgggaa aatgcgctta tcggaatccg tgaaaaaccg ctattaggac acggtagcac
     9841 aggctatgaa acattcaaaa agaaacagat tgaaacaaaa caaatggcaa aaacaacgct
     9901 taggtttaat agcttacaca accaatacct agaagccttt gtgaaaagag gtgtagttgg
     9961 ttttatggcg ctaatggcta ttttaattat tccatttgtt atttttgcca aacgattaaa
    10021 ggcaaaaaat agagaggtaa aatgtatggc gatattaggc attgtacata ttatttcgca
    10081 ttcattcttt ttcctaagcc aatcattttt agcccataat tcaggctcat tattctattt
    10141 ctttgtgtta attttactct accatttagt caaacagaac gaagagataa tatgataaaa
    10201 caatagaaga aagttgggaa tataaccgag gtggtaactt catcttctac cacaggataa
    10261 atgtcgggat atttcctctt tttctgcttc ttactactaa ttccgattag ccaaatacca
    10321 ttccactgtt ttacgcaagc cactttcaaa agtttctttc ggtttccagt cgagttcctt
    10381 ttcgattttt gaagtatcaa ttgcatagcg gaaatcgtgg ccagggcgat cttgcacata
    10441 agtaattaaa tcagcatatt gtcctacaac aagcgggtta tttggcacca tttcttgcaa
    10501 aatagaacag atagaacgaa ccacttcgat attggttttt tcattatgcc cgccaatatt
    10561 gtaggtttct ccgatttgcc ctttttgcaa caccaaatag agggcacgaa tatgatcttc
    10621 cacaaacagc caatctctga cctgcaagcc gttgccgtaa acaggtaggg atttaccttc
    10681 taaggcattt aaaatcatta acggaataag tttttcggga tattggtatg ccccataatt
    10741 attggaacag ttggtgatga cagtcggtaa accgtaggtg cgatgccaag cccgagccag
    10801 atgatcgctg gcagctttag atgccgaata ggggctactt ggattataag gggttttctc
    10861 ggtaaataat tcctcgcttt tggctaaatc accatagacc tcgtcggtcg agatatgtag
    10921 aaagcgaaac gccgatttcc ttggctcagg taacgtgtcc caataggctc tcgctgcctc
    10981 taataaagta taagtgccga caatattggt ttgaataaaa tctgctgccc cagaaataga
    11041 gcgatcaaca tggctttccg ctgctaagtg cattaccaca tcaggctgat atttgccaaa
    11101 aatctcagaa atttgaccgc ttgcacaaat atctgctttt tcaaaatggt agcgttcgtg
    11161 atgtgcgaca ctctccaatg aggctaaatt tcccgcatag gtgagcttat ccacattgat
    11221 aactgtgtgt ggagtatgtt caatcagata gcgaactaat gcagatccga taaaaccggc
    11281 tccgccagtg atgaggatga tcataaaggt gaatatgaaa tttgattcac gaaatttcgt
    11341 ttgtatttaa tatggctttg aatattcttt tcagcgtctt ttttatccca aatttgcaat
    11401 tcccaaggat aataaaagtt acttgaattc ttaaaataaa tatgaatacc cacatattca
    11461 tctttatctc tcaaatacca attttttagt ccatattttt cttgccaata atctaatgac
    11521 tccattactt gctgaatcac ttcactagaa acaataatac gagctccaaa aatatcgttg
    11581 agaatgctat ttactggata accttcacta cgctgtttaa aacgctcgat tttatctaaa
    11641 atcgattctg aggtttttac tcggtaaaaa taagaaattc cctctaaatc tgcacgatat
    11701 aaataatcat taatagattc gtgtaaatta agacgataag ctaaaatatg tggcgtaggc
    11761 actttggcaa aagtatgctt aagattcact ttttcaatct tacctgtttc aaagtagtct
    11821 ttcgaaaaag ctaagtgcaa cttgttgatt tcatcaatga gtttttctat tttctcaagc
    11881 atgctattca ctctctaatt tattatcttg ccccaaatcc agttagcatt gttttcaatg
    11941 ttttaaaaat aattaaaata tcaagccata aagaaaaatg cttaatatag tagaagtcat
    12001 gttctacttt tacttttgta tcatcaacat ctgccgcata accttggacg acctgagccc
    12061 aaccggaaat acccggttta acgatatggc gataattata gaatggaatt tcctcttcaa
    12121 atttatctac aaaggctgtc tgttctgggc gaggaccaat taagctcata tcacctttta
    12181 atacattaaa aaactgaggt agctcatcaa tacgagtttt acggataaat ttcccaatac
    12241 gagttaccct catatccgca ctcgaagcaa actgtgcatc atctttttcg gagtctttac
    12301 acatactacg aaatttataa atattaaact cctttccacc ttgcccaacg cgtttttgaa
    12361 taaacattgc tccaccttca ctttctaagc gaatagcaat agcggtgatt gtcataatag
    12421 gtaaagtaat gggaaacgta gcaacaatca atgcaatatc aatgatacgc ttcactaatg
    12481 agtaaattgg agaaggaagt aatgaaccta agtcattttc atacatatgg cgaattttga
    12541 cacgcccggt taaagattcc tcaagctggc gaacgttata tacaggaata ccattcaatg
    12601 tacatttcgc taaaaattta tgccattctg cggacaaatc aggatagtgt aaatctaccg
    12661 caatagagtt aattctcttt tcccccaata ttggttcact taattgaatc cactctacat
    12721 tctgaattcg gttcaaattg atagctcttc cgaatggaac caaagcgatt ttagggataa
    12781 tccaacttct tgaaagaaaa taaccaataa aacaaaatag aattgtgagt ataaagctcg
    12841 tacctagcaa tgtattagaa taatcaaatc taaatattgt taacacgatt aataaaaccg
    12901 cataccaaga aataacggtg gaaaaaacaa aacttgctga cttattacct ggatatttca
    12961 ttaacactct taagctgata gctatcatta caaaggcaag agaagtcgct ataatcgtat
    13021 tagaacgagt ttcaatagaa ttaaatttct ctccccaaaa atagatagcg ggtaagacac
    13081 ttgagaacat aacgcccaaa atactttgaa cagctgtact aaaaaagata cgttcatacc
    13141 aacgagagtg tcttttcttt tgctgaatgc tcataattta tccttttctt aatttcttat
    13201 aaagtcttcc taaaagagat ctaggcaata accgtggtaa ggctctaagt ataaaaaaca
    13261 tgcttgatga gattattgat tgtaatccca actctttttt caattttgct aattggtact
    13321 cactcttaat gtaattccac cctttacgcc gagcgtacat tgcagaacct gaacgaacat
    13381 ttaccagtac atctggtaaa ttatacacct catatttctg tgtaataact cgtaaccata
    13441 aattgtaatc ttccatataa agatgatgct gatagcctcc aacatgctcg atcacagatt
    13501 ttttataggc tactgccata tggttaaaag gatttcttag taatgctgaa atacgaattt
    13561 catcatcatt aatgggcact tgttttatac ccagagaatt agacattgtt tcgtcaaatt
    13621 cttcaacttg tccccccaat aaaaccacat caggattttt actaataaaa tcaatttgct
    13681 tttcaaatcg agatggtaag caaatatcat cagtatccat tctaaacacc cactcattag
    13741 agcagtgttt taagccttca tttaaggccg gcctaaaccc acattttgtg gtaaactaac
    13801 aacaacaagc ggtaattttt cagtaaaatg ttgcacaatt cgctctaaat ctccaggaat
    13861 tataccatca aaaaccacaa caatttcact tgctggtaaa gtttgggata ctaaagaatc
    13921 taaacacatc tctaaataag ctggtttttc tttataatac aaagatatta atatcgaaaa
    13981 cttcacaact acttttccca ctttt
//
LOCUS       DANLZD010000068        13982 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.068, whole genome shotgun sequence.
ACCESSION   DANLZD010000068 DANLZD010000000
VERSION     DANLZD010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13982
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.068"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            7..459
                     /gene="argR"
                     /locus_tag="PXE26_001443"
     CDS             7..459
                     /gene="argR"
                     /locus_tag="PXE26_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HDL5594020.1"
                     /translation="MDSLSEAFKSLLKEEKFGSQSEIVAALQEMGFDNINQSKVSRML
                     SKFGAVRTRNPKMEMVYQLPVELSVPTTSSPLKNLVVDIDHNDALIVVKTSPGAAQLI
                     ARLLDSMGKAEGILGTIAGDDTIFITPVRNVQIEKLVKNVTQLFETSL"
     gene            509..1405
                     /locus_tag="PXE26_001444"
     CDS             509..1405
                     /locus_tag="PXE26_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HDL5594021.1"
                     /translation="MHIFITGGTGFIGRELIQQLKSENHHFTLLTRDTEAKSDDLQIN
                     YCYSLDELVDLNDFDAVINLAGEPIFDKRWTDEQKQKLIESRVNLTNKLSQLMNASSN
                     PPHTFLSGSAIGIYGDLPPSANFYTESTACYQDCFTNRLCQQWEAAALKAASDKTRVC
                     LIRTGTVFSPEGGALKKILPLYRCGLGGKLGSGKQYWAWISRRDHVQAVIFLLKNANC
                     SGAYNFVAPNPVRNEEFNRILANAVNRPAFFTVPEFALKLGLGERACLVLDNQQLIPE
                     KLLAASFVFQDPILTENVFLNP"
     gene            1450..3648
                     /gene="uvrD"
                     /locus_tag="PXE26_001445"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
     CDS             1450..3648
                     /gene="uvrD"
                     /locus_tag="PXE26_001445"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HDL5594022.1"
                     /translation="MDFSLLLDGLNDKQREAVAAPIGNYLVLAGAGSGKTRVLTHRIA
                     WLIGVENVPESNILAVTFTNKAAAEMRHRIEYTLSQSGDNRLFGMWVGTFHSIANRLL
                     RSHYLDADLPQDFQIMDTEDQQRLLKRLLKLHNIDEKHFPPKHVAWYINAQKDKGKRA
                     KDIDHYNDPNEKKLVEIYQIYQDACDRAGLLDFAELLIRAYELFKTKSTILQRYQQRF
                     QQILIDEFQDTNNIQYDLIRLLAGDVGKVMIVGDDDQSIYGWRGAQVENIQRFLNDYD
                     NAQTIRLEQNYRSTGNILSCANELIANNDNRLGKNLWTDSGDGEPVDIYCAFNELDEA
                     RFVASQIKQWKEDEGDLAECAVLYRSNSQSRVIEEALIQANIPYRIYGGMRFFERQEI
                     KDALAYLRLIANRQDDAAFERVINTPTRGIGDRTLDTLRQITRGRQITLWQAIQVAVQ
                     EEQLSGRATSSLLRFVELINALDQETEQMSLAEQTDFVIKKSGLYEMYKQEKGEKGEV
                     RIENLEELVTATKQFVKPDEAEELTDLTAFLTHASLEAGEAQASQHEDYVELMTLHSA
                     KGLEFPRVFIVGVEEGIFPSGMSFDEGRLQEERRLAYVGITRAKKKLTISYAESRRLY
                     GKEERHVPSRFIAELPEEHIREVRLRGSINRAASFNQANSFAKNPTKTTASFLNDDTW
                     KMGQKVNHAKFGQGTIINVEGSGEATRLQVAFVGNGIKWLIAKMANLERI"
     gene            complement(3795..3869)
                     /locus_tag="PXE26_001446"
     tRNA            complement(3795..3869)
                     /locus_tag="PXE26_001446"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3835..3837),aa:Gln,seq:ttg)
     gene            complement(3924..3998)
                     /locus_tag="PXE26_001447"
     tRNA            complement(3924..3998)
                     /locus_tag="PXE26_001447"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3964..3966),aa:Gln,seq:ttg)
     gene            complement(4024..4108)
                     /locus_tag="PXE26_001448"
     tRNA            complement(4024..4108)
                     /locus_tag="PXE26_001448"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4072..4074),aa:Leu,seq:tag)
     gene            complement(4111..4187)
                     /locus_tag="PXE26_001449"
     tRNA            complement(4111..4187)
                     /locus_tag="PXE26_001449"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4151..4153),aa:Met,seq:cat)
     gene            complement(4354..5178)
                     /gene="aroE"
                     /locus_tag="PXE26_001450"
     CDS             complement(4354..5178)
                     /gene="aroE"
                     /locus_tag="PXE26_001450"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HDL5594023.1"
                     /translation="MNRYAVWGNPIAQSKSPRIHQLFALQTQRNIEYIANLGDETAFE
                     QQLADFFASGAKGCNITAPFKERAFKLADEFSETALLAQACNTLKRLEDGRLYADNTD
                     GAGLVSDLERLGWLQKGHKTLILGAGGATKGVLLPLLKAGLEITLYNRTQEKAVVLAE
                     KFAKFGKIQTACLSDLANQLFNLIVNATSLGLQGKYVELPESVIASANIYDMQYAPNM
                     QTPFLNYARRCGATACQDGLGMLVGQAAFAFSLWEGQFPDVEPVLAQLKLEMQTVK"
     gene            complement(5185..5739)
                     /locus_tag="PXE26_001451"
     CDS             complement(5185..5739)
                     /locus_tag="PXE26_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HDL5594024.1"
                     /translation="MNNFLEIVNQLKQEEVVAYPTEAVFGLGCNPQSEKAVRKLLVLK
                     QRPEEKGLILLASDLKYLLPYIDEARMTEQAWQRLSHIGEQAITWIVPVKNTVPSYLT
                     GKFDSIAVRLCNVPAVVQLCEASGVALTSTSANLSGEPPCRNAKEVIDQFGQDFPVLH
                     ADTLGRENPSEIRDIFSQQIFRQG"
     gene            complement(5732..6268)
                     /locus_tag="PXE26_001452"
     CDS             complement(5732..6268)
                     /locus_tag="PXE26_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="HDL5594025.1"
                     /translation="MVLFKSTKQTETCPQCGSPLQIKQGKKGLFLGCSAYPECDYIKP
                     LHQAGHIIKQLDELCPECGGNLQLKQGNYGIFIGCSHYPECHFIVHEEAEVEEEFDCP
                     ECKQHKLIARKGRSGKIFYGCIGFPNCKFTLATRPINHLCEKCGCELATIKKIKGKQF
                     TICANKSCQHQTELKPNE"
     gene            complement(6278..6589)
                     /locus_tag="PXE26_001453"
     CDS             complement(6278..6589)
                     /locus_tag="PXE26_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HDL5594026.1"
                     /translation="MNREKITFFSRFEADILSGKKTITIRDKSESYFQPNQELAVFTN
                     ETDRFFANIKVLSVTPIVFDELNEQHAKQENMSLAELKQVIREIYPNDNAFFVIEFTL
                     I"
     gene            complement(6582..7058)
                     /gene="recX"
                     /locus_tag="PXE26_001454"
     CDS             complement(6582..7058)
                     /gene="recX"
                     /locus_tag="PXE26_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HDL5594027.1"
                     /translation="MTTSTTKTNKYTAVNYLLYLLSKRDYSEQELRQKLKQKEYELTE
                     IDAAIEKAQANQWQSDERFCTTFIRYRSMQGIGPRRLKQELKLKGVKDWLINQELENA
                     EVDWFELAEQIFEKKRPLVWDLKAKQKMWRFMVSRGFYNDHFSHLMALDYSSDEYE"
     gene            complement(7117..8223)
                     /gene="recA"
                     /locus_tag="PXE26_001455"
     CDS             complement(7117..8223)
                     /gene="recA"
                     /locus_tag="PXE26_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HDL5594028.1"
                     /translation="MAEKKSQKNTPVKQIDPEQKEKALAAALAQIEKQFGKGSIMKLG
                     DTQALDIEAVSTGSLGLDSALGIGGLPMGRIVEIYGPESSGKTTLTLSVVAQAQKNGK
                     TCAFIDAEHALDPIYARKLGVDTDGLLISQPDNGEQALEICDALVRSGAVDVIIVDSV
                     AALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVIFINQIRMKIGVMFG
                     NPETTTGGNALKFYASVRLDIRRSGVVKDGDEVIGSETKVKIVKNKVAPPFREVQFDI
                     MYGEGIARMNELLILAESHGFINKAGAWFSYEGEKIGQGKNNAIKWLKEHPEVASKIE
                     QDIRNLLISNPTFTATPDSENADNADDEFSEEEL"
     gene            complement(8324..8944)
                     /locus_tag="PXE26_001456"
     CDS             complement(8324..8944)
                     /locus_tag="PXE26_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HDL5594029.1"
                     /translation="MCRFPLFETLSIIDGKVQNLQYHQQRFEQATQEYFGCEPRFSLA
                     DILVVPEASQRGKVRCRIDYNATEFELKFFIYSPKKVERFRLVEVENWDYHLKFSDRK
                     RFDLLPILQNEEVIILNNGYVSDCSIGNLLFLKQGIWYSPQHYLLKGTQLSKLLDEGK
                     VVLAKIAKQDLHQYEKIMLINALNPFEEPRALPCSQIYFCDLDRKS"
     gene            complement(8922..9896)
                     /locus_tag="PXE26_001457"
     CDS             complement(8922..9896)
                     /locus_tag="PXE26_001457"
                     /EC_number="2.6.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component I"
                     /protein_id="HDL5594030.1"
                     /translation="MQDFIHQANHYGQAKRPFFFLIDFEQQKPLIFPLEQAHASGLFF
                     EFFCKSNLEKPVEKPTKAFELSANPIPFSEYQTGFELVKKEIQAGNSYLLNLSYPTAI
                     ETNYSLAEIFAASKAKYKCYLQGRFVCFSPECFVRIENNRIFSYPMKGTINANEENAE
                     QKLMASEKEFTEHNTIVDLIRNDLALVAKNIEVTKYRYVEKVETHRGAILQTSSEICG
                     ELGENWQENIGSILAKLLPAGSISGAPKEKTVSIIQQAELGKRGYYTGIFGYFDGESL
                     ESAVAIRYIAQTSNGLVFHSGGGITSQSVLTDEYNELLEKVYVPISAI"
     gene            10006..11613
                     /gene="rmuC"
                     /locus_tag="PXE26_001458"
     CDS             10006..11613
                     /gene="rmuC"
                     /locus_tag="PXE26_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HDL5594031.1"
                     /translation="MHFQEIGIYIALAVCVLVGVYLFFLKSRYQRNAYELSQDLGKIT
                     ENFEQIQQKYEVLAQEKNQLEQWAIQQQTKYEAVSERLNERDGQLQRFQQKIELAEQQ
                     ENQLERYINELKERVGSSQAKAESLEEQLQFSQSSLSTKERENQALFSRLNEVQNELT
                     ELRTTLSEKQANFEAQQRNFIEVKQQLNVEFQHLAQQILDEKSKRFSETNQSSLEALL
                     KPFKEQIEGFQKRVNEVHSESLKGSANLEAEIKRVLQIGVSMSEEAQNLATALKGNNK
                     IAGNWGEVQLESALQSAGLLAGEHYQAQESFRDEEGRRFAPDFVVHLPDQKHLIIDSK
                     VSLVAYDQAVRSEENFAISQALDEHCRSLRNHIEGLSKKNYSALLGIKSPDFVLMFIP
                     IEPAYIEAMKHDPQLFNFGYERNVILVSHTTLMPILRTVANLWRIERGNSEAREISEK
                     AGEIYNQVCAVADRLAKLGNTLNTANNQYNQTVTSLVGRQGLLGKVERFQHLSSKASQ
                     IVPQVELIENEVDTIKLEMVSRELLEE"
     gene            11676..12260
                     /locus_tag="PXE26_001459"
     CDS             11676..12260
                     /locus_tag="PXE26_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component II"
                     /protein_id="HDL5594032.1"
                     /translation="MLKKLLIIDNHDSFTFNLVDLLRKLDVPAKVVLVEELDLNEVEH
                     FSHILISPGPDVPRAYLQTFAMLERYHQTKSILGVCLGHQTICEFFGGKLYNLNDVRH
                     GQQRTLTQIEPNPIFKGLPKQLKVGLYHSWGILQNSLQNTPLVPTAVCDQNVLMAFKH
                     QHLPIFGVQFHPESFITEFGQQMLANWLEITQDF"
     gene            12357..13439
                     /gene="prfA"
                     /locus_tag="PXE26_001460"
     CDS             12357..13439
                     /gene="prfA"
                     /locus_tag="PXE26_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HDL5594033.1"
                     /translation="MKDSIINKLESLSERHEELQALLGDASIISDQDKFRAYSKEYSQ
                     LEEVVGTFNRWKKLNNDIEEAQLLLDDPDMKDMAAEEIAENKAEIENLEQHLQILLLP
                     KDPNDEYNAFLEIRAGTGGDEAGIFAGDLYRMYSRYCESKRWRIEEMSANESEQGGYK
                     EIIVKISGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEIN
                     PSDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALAVLAS
                     RIVQVEQERQAAEQADTRRNLLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMN
                     GKIDELIQPIITEYQADQLAALSEQN"
     gene            13551..>13982
                     /locus_tag="PXE26_001461"
     CDS             13551..>13982
                     /locus_tag="PXE26_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594034.1"
                     /translation="MRKLGLLAVFTLVLSACSNSTKIEQTILSKQDIVGSWVCAIKYD
                     DLKVSTLDFSEFKANGEMTNFGDISDENFEPIKFTYVTGDKGKWDLKGNRLVIDYDLS
                     ERKVKRTTPKKFLEFLKQEERKASKTAKKLLKYEQGIFNILS"
BASE COUNT         4208 a         2807 c         2902 g         4065 t
ORIGIN      
        1 gacaagatag atagtttatc agaagcgttt aaatcgctgt taaaggaaga aaaattcggc
       61 tcgcaaagtg aaattgttgc cgcactacaa gagatgggct ttgataatat caaccaatcc
      121 aaagtttctc gaatgttatc aaaatttggt gcagtcagaa cccgtaatcc taaaatggaa
      181 atggtgtatc agctaccagt cgaattaagt gtaccgacta cctccagccc acttaaaaat
      241 ttggtggtag atattgatca taatgatgcg ttaattgtgg tcaaaaccag ccccggtgcg
      301 gctcaactga ttgcacgttt gctcgattca atgggtaaag ccgaaggtat tttaggcact
      361 attgctggcg atgatacgat ttttataacg ccggtacgca atgtgcaaat tgaaaaattg
      421 gtgaagaatg tgacacagtt atttgaaaca tcattataga ataagtaaag gaggacttaa
      481 tgttctcctt attttttagg agattattat gcacattttt ataacaggtg gtacgggttt
      541 tattgggcgt gaattaatcc agcaattaaa atctgaaaat caccacttta cacttcttac
      601 tagagataca gaagcgaaaa gtgatgattt acagattaat tattgctatt cacttgatga
      661 acttgttgat ttaaatgatt ttgatgcagt aattaacctt gccggtgagc cgatttttga
      721 taaacgttgg acagacgaac aaaaacagaa attgattgaa agccgggtta acctaacgaa
      781 taagctcagt caattaatga atgcaagctc taaccctccg catacttttc tctccggttc
      841 ggcaatcggg atttatggcg atttgcctcc ttctgcaaat ttttatacag aatcgaccgc
      901 ttgttatcaa gattgcttta ccaaccggct ttgccaacag tgggaagccg ctgcactaaa
      961 agccgcaagt gataaaaccc gagtgtgttt aattcgtacc ggcacggtat tttcgcccga
     1021 aggcggagca ttaaagaaaa ttttaccgct ttatcgatgc ggattaggcg gaaaacttgg
     1081 ttcaggcaaa caatattggg cgtggatcag ccgccgggat cacgtacaag cggtcatttt
     1141 tctgctcaaa aatgcaaatt gttcgggtgc ttataatttt gttgcaccaa atccggtgag
     1201 aaatgaagaa tttaatcgta ttttagcgaa tgctgttaat cgcccggcat tctttactgt
     1261 gcctgaattt gccttgaaat taggcttagg cgaacgagct tgtttagtct tagataatca
     1321 acagctcatt ccggaaaaac tactcgcagc cagttttgta ttccaagatc cgattttaac
     1381 cgagaacgtt ttcttaaacc cataatttag gctataatgc tgtataaaag cacagattaa
     1441 aaggtgatta tggatttctc attattatta gacggtttaa atgacaagca gagggaggcg
     1501 gttgctgccc cgattggtaa ttatttagtg ttagccgggg cgggttcggg caaaactcgg
     1561 gttttaaccc atcgcattgc gtggctgatt ggggtggaaa atgtgccgga atccaatatt
     1621 ctggctgtta cctttaccaa taaagcggcg gcggaaatgc gacatcggat tgagtacact
     1681 ctttcccaat cgggcgataa tcgattgttc ggaatgtggg ttggtacttt ccacagcatt
     1741 gccaaccgct tacttcgttc ccactattta gatgcggatt taccgcaaga tttccaaatt
     1801 atggataccg aagatcagca acgtttactc aaacgtttac tgaaactgca taatattgat
     1861 gagaaacatt ttccgccaaa acacgttgcg tggtatatca acgcccaaaa agataaaggc
     1921 aaacgggcaa aagatattga tcactataac gatccgaatg aaaaaaaatt ggtggagatt
     1981 taccaaatct atcaagatgc ctgcgaccga gccggtttgt tagattttgc cgagctgttg
     2041 attcgggctt atgaactatt caaaaccaaa tcaaccattt tgcaacgtta tcaacaacgt
     2101 tttcagcaaa ttttgattga tgagtttcaa gacaccaaca atattcagta cgacttaatt
     2161 cgtttgcttg ccggcgatgt cggcaaagtg atgattgtcg gcgatgatga tcagtctatt
     2221 tatggttggc gtggggcaca ggttgagaat atccaacgtt tcttaaatga ttatgacaac
     2281 gctcaaacca ttcgcttaga gcaaaattac cgctctaccg gcaacatttt aagctgtgcc
     2341 aatgaattaa ttgccaataa cgataaccgc ttaggcaaaa atttatggac agatagcggt
     2401 gatggcgagc ctgtggatat ttactgtgcc ttcaacgaac ttgatgaagc tcgctttgtt
     2461 gcctcgcaaa tcaagcaatg gaaagaagac gagggtgatt tggcggaatg tgcggtgttg
     2521 tatcgcagca acagccaatc tcgtgtgatt gaggaagctt taattcaagc gaatattcct
     2581 tatcgcattt acggtggaat gcgattcttt gaacgccaag aaattaaaga tgctctggct
     2641 tatttacgct taatcgccaa tcgtcaagac gatgcggcgt ttgaacgggt gatcaacacg
     2701 ccaaccagag gcattggcga tcgtacctta gacacactcc gtcaaattac ccgtggtcgc
     2761 caaattacgc tgtggcaagc aattcaagtg gcggtgcaag aagaacaact ttcagggcgt
     2821 gccacttctt ccttattgcg ttttgtagag ctgattaatg ctcttgatca agaaaccgag
     2881 cagatgtcgc ttgccgaaca aaccgatttt gtgattaaaa aatcgggttt atatgaaatg
     2941 tataagcaag aaaaaggcga aaagggcgaa gttcggattg aaaacttaga agagttagtt
     3001 accgcaacta agcagtttgt gaaacctgac gaagcggaag agctgaccga tcttaccgca
     3061 tttttaaccc acgcctcact tgaggctgga gaagcccaag cctcgcaaca cgaagattat
     3121 gtcgaactga tgacgctaca ttccgccaaa ggattggagt ttccccgtgt gtttattgtg
     3181 ggcgtggaag aagggatttt cccaagcgga atgagctttg atgaaggcag gttgcaagaa
     3241 gaacgccgtt tggcttatgt cggcataacc cgagctaaga aaaaactgac gattagctat
     3301 gccgaatcaa gacggcttta tggtaaagaa gaacgccacg ttccgtctcg ctttattgct
     3361 gaattacctg aagagcatat tcgagaagtg agattgagag gctcaattaa ccgagcggca
     3421 agttttaacc aagctaattc atttgcaaaa aatccgacaa aaacgaccgc ttccttttta
     3481 aacgatgata cttggaaaat ggggcagaaa gtgaaccacg ctaaatttgg acaaggcacg
     3541 attattaatg tggagggctc aggtgaagcc acccgtttgc aagttgcctt tgtcggcaac
     3601 ggcattaaat ggctgattgc caaaatggca aatttagaga ggatttaggc gaataaaaag
     3661 ttttttgcag gaatatagat ggcgagatat attgcccctt aaccttaaac taagggtaaa
     3721 taaaattaaa taatgcaagc tagatataat gtaaagtatc agaaataaga tattaattta
     3781 agataaagaa tagatggctg gggtactagg attcgaacct agggatgccg agatcaaaac
     3841 ccggtgcctt accgcttggc gataccccaa aagaaaaaac taacttacgt tagcttatat
     3901 agatttgaat gtttgaaatt aagtggctgg ggtactagga ttcgaaccta gggatgccga
     3961 gatcaaaacc cggtgcctta ccgcttggcg ataccccaac actaattttt gttaatcgat
     4021 aaatggtgcg ggacgaggga cttgaaccca cacacctcgc ggcgccagaa cctaaatctg
     4081 gtgcgtctac caatttcgcc agtcccgcaa tggtggctac agcgagattc gaacttgcga
     4141 ccccaacatt atgagtgttg tgctctaacc agctgagcta tgtagccatt tgcgttcacc
     4201 atatcggtca acggagtgca ttatgctgat tttagggctt tccgtcaaat acttttttta
     4261 aaaaatttga atttttgatt cgcttgtata gttattcgtc gttttggctt aaatctagca
     4321 ttttttgttt ataaaataat agcttatatt ctgctatttc accgtttgca tttctaattt
     4381 taattgagcc agtacaggct caacatcggg gaattgccct tcccacaaag aaaacgcaaa
     4441 cgctgcctgt ccaaccaaca ttcctaatcc gtcttggcac gctgttgctc cacaacgcct
     4501 tgcataattg agaaaaggag tttgcatatt gggggcatat tgcatatcgt aaatattcgc
     4561 cgatgctata acagattcag gcaattcaac atatttgcct tgcagaccga gagaggtggc
     4621 attgacgatt aaattaaaca gttggtttgc caaatcgctt aaacaagcgg tctgaatttt
     4681 gccaaatttt gcaaattttt cggctaaaac gaccgctttc tcctgcgtgc ggttatatag
     4741 agtaatctct aaccccgctt taagtaacgg aagtaatacg cctttggttg ctccacctgc
     4801 tccaagaatt aaggttttat gccctttttg taaccaacct agccgttcca aatcagaaac
     4861 taaaccggcc ccgtcggtat tatcggcata taaccgtcca tcttctaagc gtttaagcgt
     4921 attacacgcc tgtgccaaca aagcggtttc gctaaattca tctgccaatt taaaggctct
     4981 ttctttaaaa ggggcggtga tgttgcaacc ttttgctcca gaagcgaaaa aatcggctaa
     5041 ttgttgctca aaagccgttt catctcctaa gttagcgata tattcaatgt tgcgttgggt
     5101 ttgtaaagca aagagttgat gaatacgggg ggatttactt tgagcaatcg ggttgcccca
     5161 cacggcatat cggttcattt cggcttatcc ttgtctaaaa atctgttggc tgaaaatatc
     5221 tcgaatttcg gaagggtttt ctctacctag cgtgtctgcg tgtaatacag gaaaatcttg
     5281 accaaactga tcgatgactt cttttgcatt gcggcaaggt ggttctccgc tcaaattggc
     5341 actggtagag gtcaacgcaa cgccgcttgc ctcacacaac tgaaccaccg ccggcacatt
     5401 acataaacgt acggcaatag aatcaaattt gccggtgagg taacttggca cagtattttt
     5461 aaccggtacg atccaagtaa ttgcctgctc gccaatatgg cttaggcgtt gccaagcctg
     5521 ttccgtcatt cgagcttcat caatataggg aagaagatac tttaaatcag aagccagtaa
     5581 aattagccct ttttcctcag ggcgttgttt taatacgagt aatttcctta ccgctttttc
     5641 actttgtgga ttgcagccta agccaaaaac cgcttcggtt gggtaagcta caacttcttc
     5701 ttgctttaat tgattaacta tttctaaaaa attattcatt cggttttaat tctgtttggt
     5761 gctggcaact tttgttagca caaatggtga attgcttgcc cttaattttt ttgattgtag
     5821 cgagttcaca accacatttt tcacacaagt ggttaatcgg tcgagttgct aatgtaaatt
     5881 tgcaattagg gaagcctata caaccataaa atattttgcc tgaacgccct tttctagcaa
     5941 tcagtttatg ttgcttgcat tcagggcaat caaactcttc ttcaacctca gcttcttcgt
     6001 gtacgatgaa gtggcattca gggtaatggc tacagccgat aaaaatacca taattgcctt
     6061 gttttaattg gaggtttccg ccacattcag ggcaaagttc atctaattgc ttaataatat
     6121 gaccggcttg atgtaatggc ttaatataat cacattcagg gtaagctgaa caacccaaaa
     6181 ataacccttt tttgccctgc ttaatttgca acggcgagcc acattgtggg caagtttcgg
     6241 tctgtttggt tgatttgaaa agtaccatat tgatttgcta aataagcgta aattcaatca
     6301 caaaaaacgc attgtcattc ggataaatct cccgaataac ttgtttcaat tcggctaagc
     6361 tcatattttc ttgtttagcg tgttgctcgt ttaattcatc aaacactata ggtgttaccg
     6421 atagcacttt aatattggcg aaaaatctat cggtttcatt agtaaaaacc gctaattctt
     6481 ggtttggttg aaaataagat tctgacttgt ctcgaatcgt aattgttttt ttaccgctta
     6541 aaatatcggc ttcaaatcgg ctgaaaaagg taattttctc tctattcata ttcatcgcta
     6601 ctgtaatcca gagccattaa atgactaaaa tgatcgttat aaaaaccacg gctaaccata
     6661 aatcgccaca ttttctgctt tgctttcaga tcccatacaa gcggtcgttt tttctcaaaa
     6721 atttgctcag ctaattcaaa ccaatccact tcggcgtttt ctaattcttg gttaattaac
     6781 caatctttta cccctttaag ttttagctct tgctttaaac ggcgaggccc aatgccttgc
     6841 attgaacgat aacggataaa agtggtacaa aagcgttcat cactttgcca ctgattcgct
     6901 tgagcttttt caatcgctgc atcaatctcc gtgagttcat actctttttg ctttagtttt
     6961 tgccgaagct cttgctcgct gtaatcacgc tttgaaagta aatatagcag ataattaacc
     7021 gctgtgtatt tatttgtttt agtagtagat gttgtcattt atcggttata aataaaaatg
     7081 cgattttcac gttgagcgaa aaccgcataa atttaattag agttcttctt cactaaattc
     7141 atcatctgca ttgtctgcat tttcagaatc tggagtagcc gtaaaagttg ggtttgaaat
     7201 gagtagattt cgaatatctt gctcaatttt actcgccact tcagggtgtt cttttaacca
     7261 tttgatggca ttatttttac cctgaccgat tttctcccct tcataagaga accaagcccc
     7321 tgctttatta atgaagccgt gagattccgc taaaatgagt aattcattca tacgggcaat
     7381 gccctcaccg tacataatat caaattggac ttcacggaac ggtggagcaa ccttgttttt
     7441 cacaattttc acttttgttt cgctaccgat aacctcatca ccgtctttta ctacgcctga
     7501 acgacgaata tctaaacgta ctgaagcata gaatttaagg gcattaccac cagttgtggt
     7561 ttcagggtta ccgaacatta ctccaatttt catacgaatt tggttaatga aaatcaccaa
     7621 gcagttggtc gctttgatat ttgcggttaa tttacgcaat gcttgtgaca ttaaacgagc
     7681 ttgtaagccc atatgggaat cacccatatc gccttcaatc tctgcttttg gtgtaagtgc
     7741 cgcaacagag tccacaataa ttacatcaac cgcaccggaa cgaactaacg catcacaaat
     7801 ttctaatgct tgttcgccat tatccggttg tgaaattaat aatccatctg tatctacccc
     7861 taacttacgg gcgtaaatag gatcaagtgc gtgttcggca tcaataaagg cacaagtttt
     7921 accatttttt tgggcttgag ccaccacaga taaagttaat gtagttttac ctgaagactc
     7981 cggtccataa atttccacaa tacgacccat tggtaaacca ccaatgccta atgctgagtc
     8041 taaaccaaga gaaccggttg aaactgcttc aatatcaagg gcttgagtat cgcctaactt
     8101 cataattgag cctttgccaa attgcttttc aatttgagct aatgcggctg ccaacgcttt
     8161 ttctttttgt tccggatcaa tctgtttaac cggagtgttc ttttgacttt ttttctctgc
     8221 catattctat cctttgtaaa cttttatcta aaagcaaccg cttgttgctg caaaataact
     8281 gtatattatt atagtattta cttatccagt tgcaagcatt tttttaggat tttcgatcaa
     8341 gatcacaaaa ataaatttgc gagcaaggca atgcccttgg ttcctcaaag ggattaagag
     8401 cattaatcaa cataattttt tcatattgat gcaaatcttg cttggctatt ttggctaaaa
     8461 cgactttccc ttcatcaagc aatttactaa gctgagtgcc tttgagcaaa taatgttgcg
     8521 ggctatacca gattccttgt tttaggaaca gtaaattgcc gatggagcaa tcactgacgt
     8581 agccattatt gagaataatc acctcttcat tttgtaaaat agggagcaaa tcaaaccgct
     8641 tgcggtcgct aaatttgagg tgataatccc aattttccac ctcaaccaag cgaaaacgtt
     8701 ctactttttt gggcgaatag ataaaaaatt tcagctcaaa ttctgttgcg ttgtaatcta
     8761 ttcggcaacg tactttgccc cgttgagaag cctctggcac aactaaaata tcagcaaggc
     8821 taaaacgagg ttcacagcca aaatattctt gtgttgcttg ctcaaaacgt tgttgatgat
     8881 actgtaagtt ctgaactttg ccgtcaataa tcgaaagggt ttcaaatagc ggaaatcggc
     8941 acatagactt tctctaacag ttcattatat tcatcagtta acacactttg tgaggtaatg
     9001 ccaccaccac tatgaaacac aagcccgttt gaggtttgag caatgtaacg aattgccacc
     9061 gcactttcta agctctcgcc atcaaaataa ccaaaaatac cggtgtagta accccgtttt
     9121 cctaattctg cttgctgaat aatcgaaacc gttttctctt tcggtgcacc gctaatggag
     9181 ccggcaggta gtaattttgc caatatcgaa ccgatatttt cttgccaatt ttcacctaat
     9241 tcgccacaga tctcggaact tgtctgcaaa attgcccctc gatgggtttc tactttttcc
     9301 acataacggt atttagtaac ttcaatattt ttcgccacca acgccaagtc atttcggatc
     9361 aaatccacaa tggtattatg ttcggtaaac tctttttccg aagccattaa tttctgctcg
     9421 gcattctcct catttgcatt aattgtgcct ttcatcgggt aggaaaaaat gcggttattt
     9481 tcaattcgca caaagcattc aggggaaaaa cagacgaacc tgccttgcaa ataacattta
     9541 tattttgctt tgctggcggc aaaaatttcc gccaatgaat aattggtttc aatggcagtc
     9601 gggtagctca aattcagcaa gtagctattg ccggcttgaa tttccttttt cactaattca
     9661 aacccggttt ggtattcgct aaacggaatc ggatttgccg ataattcaaa agctttagtc
     9721 ggtttttcaa ccggcttttc gagattcgat ttgcaaaaaa attcaaaaaa aagaccgctt
     9781 gcgtgagcct gttctagcgg aaaaataagt ggcttttgct gctcaaaatc aattaaaaag
     9841 aaaaaagggc gttttgcttg cccgtagtga ttggcttggt gaataaaatc ttgcatagaa
     9901 aacacaatgg ctgaaattgg ctgaatcatc aaaagctctg ttataatgca aagcaataga
     9961 tttgaaaagc attttttaaa aaaggtttta ccgatgaaca acaccattca ttttcaagaa
    10021 attgggatct acatcgccct tgccgtttgt gtgctggtag gcgtttatct ctttttcttg
    10081 aaatcccgtt atcagcgaaa tgcctacgaa ttaagccaag atcttggcaa aatcaccgaa
    10141 aattttgaac aaattcagca aaaatatgag gtgttggctc aagaaaaaaa tcagcttgag
    10201 cagtgggcaa ttcaacaaca gaccaaatat gaagcagtga gtgaacgttt aaacgagcga
    10261 gatgggcaat tgcaacgatt ccaacaaaaa atcgaacttg ccgaacagca agaaaaccag
    10321 ctggaacgct atattaatga gctaaaagaa cgtgtgggtt cttcccaagc aaaggcagaa
    10381 agtttggaag aacagctaca atttagccaa agttcactct caactaaaga gcgggaaaat
    10441 caagcgttat ttagccgttt aaacgaggta caaaacgagc tgaccgaact gcgtactacg
    10501 ctttcggaaa aacaggcaaa ttttgaagca caacaacgca attttattga ggtaaaacaa
    10561 cagcttaatg tggaatttca acatttggca caacaaattc ttgacgaaaa aagcaagcgt
    10621 tttagcgaaa ccaatcaaag ctcgttagaa gctctactga agccgttcaa agagcaaatt
    10681 gaaggctttc aaaaacgggt gaatgaggta catagtgagt cgctcaaagg ctcggcaaat
    10741 ttagaggctg aaattaagcg ggtgctacaa attggcgttt caatgtcgga agaggcacaa
    10801 aatctggcaa cggcattaaa aggcaataat aaaattgccg gcaactgggg tgaagtacag
    10861 cttgaaagtg ccttacaatc tgccggttta ctcgcaggcg agcattacca agcccaagag
    10921 agttttcgtg atgaagaggg gcgacgtttt gcccccgatt ttgtggtgca tttgccggat
    10981 caaaaacatc tgattattga cagtaaagtc tcgttagtag cgtacgatca agcggtcaga
    11041 tcagaagaaa attttgcaat ttctcaagcc ttagacgaac attgccgttc gctacgcaat
    11101 catattgagg gattgtctaa gaagaactac agtgcattat taggcattaa aagcccggat
    11161 tttgtactga tgtttattcc gatagaaccg gcttatattg aagcgatgaa gcacgatccg
    11221 caactgttta actttggcta tgaacgcaat gtgattttgg tttctcacac caccttaatg
    11281 ccgattttac gcacggtcgc caatttatgg cggattgaac gaggcaacag cgaggctcgt
    11341 gaaatcagcg aaaaagccgg cgaaatttac aaccaagtgt gtgcggttgc cgatcggtta
    11401 gctaaattag gtaacacgct aaataccgca aataatcaat acaatcaaac cgttacctcg
    11461 ttagtgggac ggcaaggctt actgggcaaa gtggaacgat tccaacatct ttcaagcaaa
    11521 gcaagccaaa ttgtgccgca ggttgagctg attgaaaatg aggtggatac tattaaattg
    11581 gaaatggtat cgagagaatt attggaagaa tagtcaaatc tctttattcc ctacaaaaat
    11641 atggggtgat ttgaaatact aaagaaaata ataaaatgct aaaaaaacta ttaatcatcg
    11701 acaaccacga ctcttttacc ttcaacttgg tggatttact ccgtaagctt gatgtgccgg
    11761 cgaaagtggt gctggttgaa gagcttgacc tcaatgaggt ggagcatttt agccatattt
    11821 tgatttcgcc cggccctgat gtgccgagag cctatctaca aacctttgcg atgttggagc
    11881 gttatcatca aaccaaatca attctaggcg tttgcttggg gcatcaaacg atttgcgagt
    11941 tttttggcgg caagttgtat aacctaaacg atgttagaca cgggcagcaa cgcacgctca
    12001 ctcaaattga gcctaacccc atatttaaag gtttgcctaa gcagttgaaa gttgggttgt
    12061 atcactcttg gggcattttg caaaattcgt tgcaaaatac accgcttgta ccaaccgcag
    12121 tttgcgatca aaatgtgtta atggcgttta aacaccaaca tttgccgatt tttggcgtgc
    12181 agtttcaccc ggaatctttt atcactgaat ttggtcaaca aatgttggca aattggcttg
    12241 agattacaca agatttttag cgtgaaatcc gctataatcc gtcagttatt taccctttta
    12301 aaatctgtag gggcgaaaaa tttttcgcct tacttaatat gcaagagata atttaaatga
    12361 aagattcgat tatcaataaa ttagaaagtt taagtgaacg ccacgaagaa ctacaggcgt
    12421 tacttggcga tgcctcaatt atttccgatc aagacaaatt ccgtgcttat tccaaagaat
    12481 attcgcaatt agaagaagtg gttggcacct ttaaccgctg gaaaaagctg aacaatgata
    12541 ttgaagaggc tcaattatta ctcgatgatc ctgatatgaa ggatatggca gcggaagaaa
    12601 ttgcggaaaa taaagccgaa atcgagaatc ttgagcaaca tttacaaatt ttattattgc
    12661 cgaaagatcc gaatgatgaa tacaacgcct tccttgaaat ccgtgccgga acgggcggtg
    12721 acgaggctgg tatttttgcc ggtgatttat accgtatgta cagccgttat tgcgaaagta
    12781 aacgctggcg aattgaagaa atgtcggcaa atgagagtga acaaggcgga tataaagaga
    12841 tcatcgttaa aatttcaggc gaaggcgttt acggtcagct taaatttgaa tcgggcggac
    12901 accgtgtaca acgtgtaccg aaaaccgaat cacaagggcg tattcacacc tctgcttgca
    12961 cggtagcggt aatgccggag ttgccggaaa gcgagatgcc ggaaatcaat ccatctgatc
    13021 tgcgaattga cacctaccgc tcatcgggtg caggcggtca gcacgttaat accaccgact
    13081 ctgcagtgcg gattactcat atcccgaccg ggattgtggt cgagtgtcaa gatgagcgtt
    13141 cacagcacaa aaataaagcc aaagcgctgg cagtgttagc ctctcggatt gtacaagttg
    13201 agcaagaacg ccaagccgca gagcaagcgg atacccgccg taacttactt ggctcaggcg
    13261 accgttcgga taaaatccgc acctacaact acccgcaagg gcgtgtgact gatcaccgta
    13321 ttaacctcac ggtttatcgt ttagacgaag tgatgaacgg caaaattgat gaattgatac
    13381 aaccgattat cactgaatat caagcggatc agttagcggc gttgtcggag caaaattaat
    13441 tttattgtaa gggtacactg tgtgtgcctg ccaaatataa atttgcaaaa ttttgactat
    13501 ttttgatcgc ttgtagtttc taaaaagttt aaaaatttga ggaaaacaaa atgagaaagt
    13561 taggtttatt agcagtattt actttagtat tatcagcctg ttcaaattca acaaaaattg
    13621 aacaaaccat tctttccaag caggatatcg taggctcttg ggtatgcgct attaaatacg
    13681 atgatctaaa agtaagcact ttagattttt ctgaatttaa agctaatggc gaaatgacga
    13741 atttcggtga tatttctgat gagaattttg agcccattaa atttacttat gtaacaggag
    13801 ataaagggaa gtgggactta aaaggaaatc gattagtgat tgattatgat ctttctgaac
    13861 gtaaagtaaa aagaacaaca ccaaaaaaat ttttagagtt cttgaaacag gaagagcgta
    13921 aagcctcaaa aacagctaaa aaactcctta aatatgaaca agggattttc aatattctga
    13981 gt
//
LOCUS       DANLZD010000069        13931 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.069, whole genome shotgun sequence.
ACCESSION   DANLZD010000069 DANLZD010000000
VERSION     DANLZD010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13931)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13931)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13931
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.069"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            16..228
                     /locus_tag="PXE26_001462"
     CDS             16..228
                     /locus_tag="PXE26_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5594035.1"
                     /translation="MTNKKIQKAIELVGTQTKLAEACGVSQPTVLKWLNGGGISAEYL
                     LKIEAATNGQVTIREICEELGNATAK"
     gene            212..496
                     /locus_tag="PXE26_001463"
     CDS             212..496
                     /locus_tag="PXE26_001463"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594036.1"
                     /translation="MQQQNKSPEQAGLASGKFTVRRNQDGKWRLDLTLLDFGISSPET
                     TQARCKLLQELQLALLQGQGHLNTVGVNVRKAGPVVCVGSLLSDLLNHQE"
     gene            705..977
                     /locus_tag="PXE26_001464"
     CDS             705..977
                     /locus_tag="PXE26_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594037.1"
                     /translation="MNLDHTCTNCKSKNLRVRTSEKIGLLTIQAVTYCNNCGTEQLVQ
                     SQIIRVRTPIYKERPEAMRINKCLMEADLNTPDLFDGVVADQPKQD"
     gene            1060..1392
                     /locus_tag="PXE26_001465"
     CDS             1060..1392
                     /locus_tag="PXE26_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594038.1"
                     /translation="MSKQLYYRHKSRWNRLNRLKKMNKRRLNLFLQEKRVANLESRLA
                     DEVELAKLNSEQIGDLLQALELKVNRLIRQNEKLKARVIKLEKVKQTQKQGLFAMFKK
                     VLGSKGNP"
     gene            1405..1698
                     /locus_tag="PXE26_001466"
     CDS             1405..1698
                     /locus_tag="PXE26_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594039.1"
                     /translation="MDFVATYQKIRINTNHKQFTCNHLGEIWGKENDDFKRFLLRVAF
                     LQDNPEPKPWGAYSPQEKRLLHSFSLWLEQIADFQRVMKRESKLREKHINAPD"
     gene            1850..2092
                     /locus_tag="PXE26_001467"
     CDS             1850..2092
                     /locus_tag="PXE26_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594040.1"
                     /translation="MSLITVNDYKIKKDILDADGKPCYQLYQGEELLRDTTNLSEIIA
                     YMFIRAEDKPFDELYNHIINQEAGAKTDIKFTVTVR"
     gene            2089..2421
                     /locus_tag="PXE26_001468"
     CDS             2089..2421
                     /locus_tag="PXE26_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594041.1"
                     /translation="MSQITKSAYTHIHPNWQAPRGNTYRIERYELKRRYALFCNGERV
                     VLYKDPTHPNKNVESHIESDVLLLWLLKNELGWSGNIKEPLSPQDVENIRLLEQAFCL
                     TYNGTFIK"
     gene            2418..4778
                     /locus_tag="PXE26_001469"
     CDS             2418..4778
                     /locus_tag="PXE26_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication endonuclease"
                     /protein_id="HDL5594042.1"
                     /translation="MNYQNEILSATEAFAIGVSLPPVAGASACALELHSDRLYQAFKQ
                     PYTSMVQQELFSKDPIHEPLRQSYFERLPRALAEHFGRQYKQKLHYQSQYDTADWFKA
                     EMARKMPRIEAVISQYCDVFDFLKQSHQDLDFLAELDSNVYFGAGVDTQQAVQKIKQD
                     AEVKGIQLPMHLCRLENSSRYLKAHGIRPLAYQTEEQIKQLALGIAYRVRQIQQDNIE
                     QNMHKATDGDTAYSVLLECYRAMMGEVNKLKIDSPYQKKARKGRLTEEEITTGFLKMT
                     CEKWWTRKLSKIAEQMKEHLAIACGMVNMLSPYCSNARLKAFEAQRKANIDYLKSMII
                     ANIAEPEEQLSLFETWLKSASNPKIKRLELLTRMNGFERYADKQGHEGWFITLTAPSK
                     YHAMLSRTSSVNPKWNGASPAETQVYLVNTWAKIRAKLNREGVMAYGFRVAEPHADAT
                     PHWHLILFTRPEDMEKLRRVFLSYALEVDGTEAGAKKYRCKFKRIEKEKGSATGYLVK
                     YVSKNIDGFGMDGELSDEANIQAKENAARVGAWSSVWCIRQFQQLGNIPISLWRELRR
                     LGSVEQEDETLEKLRVIADSGEWDVFTEELGGALVKRADLVARITYTERKSETGEALY
                     TMYQEPSLKVSGIINIKNGVQINTRPKEWSIQLKPKNWEEQQLQKKLENATETERAEV
                     KRKYYEKLGFNEEAIALLGELAPPWTCVSNCTGSKNNQISEEARNCLRNELITMRGRV
                     TEHQIDDLLNGKRLKIWGNSQKTMFVSYSRGRLIEHIVDNYESFLN"
     gene            4791..5123
                     /locus_tag="PXE26_001470"
     CDS             4791..5123
                     /locus_tag="PXE26_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594043.1"
                     /translation="MVKFIRLNLINYFIEKDEYGEPVRCRAFRYDEIIQTKFIEGFRE
                     GEIPADDYGFEDWNGSVLILNEEGRKYFENYLFDVKKNYCRARDNYVYVLETLDEIEM
                     KLGLLEAK"
     gene            5123..5575
                     /gene="ssb"
                     /locus_tag="PXE26_001471"
     CDS             5123..5575
                     /gene="ssb"
                     /locus_tag="PXE26_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5594044.1"
                     /translation="MNLVTLVGRLGQDPDIRTMQNGEKAAALSVATSEKWTDKQTGVK
                     KESTEWHRVVLYRRLAEIAELYVKKGHLVSIIGKIKTRKWTDSNGVERSITEIIAEQM
                     QMLSSGEKNTPNTPNKAENKPQPKQKNQDVMTADEQKDIPQFDDDIPF"
     gene            5586..5918
                     /locus_tag="PXE26_001472"
     CDS             5586..5918
                     /locus_tag="PXE26_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594045.1"
                     /translation="MREWEKQMPFSANLHIRPTGKFEVKNVNIEQIIGERGKNYGNFD
                     DVATMSQQLKAVLLDTNTQLKPHQKEAGEMICLKLARIFAGCNPDYEDNWRDIAGYAV
                     LGGKLNEK"
     gene            5908..6177
                     /locus_tag="PXE26_001473"
     CDS             5908..6177
                     /locus_tag="PXE26_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594046.1"
                     /translation="MKNKMGSKFIRVRVEHPQRKKEDIELVQDVVAYHIFNLFKFEES
                     GLRGFSQYDLEIDVKVKPVLEQKEMPVDVWIDDLGGKNGTITSGQ"
     gene            6152..6442
                     /locus_tag="PXE26_001474"
     CDS             6152..6442
                     /locus_tag="PXE26_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594047.1"
                     /translation="MEQLQAVSNEQVFAKLCEVERLLKTKGVNEHSRELWDLGDVAAY
                     FGYTKEHTSRSVVSSPHFPKPIALDGLRGKGRGAKKWVSGEVVKFCLMWKVK"
     gene            complement(6712..6894)
                     /locus_tag="PXE26_001475"
     CDS             complement(6712..6894)
                     /locus_tag="PXE26_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix protein, CopG family"
                     /protein_id="HDL5594048.1"
                     /translation="MAMSRNEIQAKSEAKRGIKQKSFKLPLEVIAEIEVLSQKLNIPQ
                     NQLIIQAIQQFKQNNP"
     gene            complement(7172..8170)
                     /locus_tag="PXE26_001476"
     CDS             complement(7172..8170)
                     /locus_tag="PXE26_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL5594049.1"
                     /translation="MATIIKNGNKYRAQVRKKGIYKTATFSTKTEANRWAYALEAQID
                     AGEYNTTPNILFAELIDKYLKEVTPTKRGKREERYRLLRIAGSNLGNIPLPALTKEHL
                     RQWQNQRLQEVQPVSVSRERATLSALFTKAMEWDYLKENPLKTLEKIKTPPARTRRYS
                     DEEIDKLIFVSGYSPNQPPLLMQQRAGAALLFAIETAMRAGEIAGLKWEHINLQARTA
                     FLPQTKNGYSRTVPLSTKAIAILNQLAQLEPNKQNSVFQLTSRSLDSNFRKLKQKANL
                     HNADLHFHDTRREALTRLSKYLTVMELAKVSGHRDLSILQNTYYNPDISELVSKLQ"
     gene            complement(8398..8474)
                     /locus_tag="PXE26_001477"
     tRNA            complement(8398..8474)
                     /locus_tag="PXE26_001477"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8438..8440),aa:Val,seq:gac)
     gene            complement(8538..9338)
                     /gene="apaH"
                     /locus_tag="PXE26_001478"
     CDS             complement(8538..9338)
                     /gene="apaH"
                     /locus_tag="PXE26_001478"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     ApaH"
                     /protein_id="HDL5594050.1"
                     /translation="MATYIVGDLHGCFNEFQLLLEKVNYNPKQDELFLTGDLVARGED
                     SLACLRFVKDSANNAKTVLGNHDLHLLGIKRVKPNDKIDAIFEAKDRLDLQNWLRNQP
                     LVIHHPKHQFLLTHAGISPEWDLATTLACAKEAEKVLQSDNYADYIAQMYENKPERWS
                     EDLQGVERWRYIINVFTRMRFCYTDKRLDFDCKLPLEQAPQELLAWFDLDNPLFTQKN
                     IIFGHWASLMGKCTRPNIYALDTGCAWGSHLTMLRWEDKQIFTQKRLK"
     gene            complement(9430..11406)
                     /locus_tag="PXE26_001479"
     CDS             complement(9430..11406)
                     /locus_tag="PXE26_001479"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exoribonuclease II"
                     /protein_id="HDL5594051.1"
                     /translation="MFQNNPLLAQLKQQIEASKEYVAGVVKASDKAFGFLECDKKSYF
                     IPPAEMKKVMHGDSVKAVVKRDGDKEQVEIDSLLEPMLDRFIAQVRLNKEGKLQLAVD
                     HPSIKQTIPANTHKKATEKLENGDWVVAQLKTHPLRDDRFFFAQVTQFICKESDNFAP
                     WWVTLARHEQPREPVANEKNYELHDELAREDLSHLYFTTIDSPSTQDMDDALFIEPIK
                     QNGKRTGWRLVVAIADPTAYIPENSHIEKAARQRCFTNYLPGFNIPMLPRELSDDLCS
                     LVPNEKRPALVGFIETDLNGNLIKETTFTSAWVESKDRLAYDDVSDYLEGVENAWQPQ
                     SEETKQQIEWLHQFTQARIQWRAENALLFKEQGDYTFELNEDGSVKDIHVEYRRIANQ
                     MIEESMILANICCAKFLSQHAKTGVFNTHSGFDPKNYELVKSFLLQTLASDENRDELA
                     ERYSAERLATLEGYCQMQRDIQDYPEKFLELRLRRYLTFAEFKAEVAPHFGLGITDYA
                     TWTSPIRKYGDMVNHRLIKQVLLGKQSQAVEESVLSRLQEARRQNRLVERDIADWLYA
                     RYLAPMVEQAVEFECEIADVSRGGLRAKVIKNGAQIFVPFSSLHDNKEEMEYRQEELA
                     LYIKGEKAYQIGQAVKVKLTEVRLETRSIVGNII"
     gene            11566..11844
                     /locus_tag="PXE26_001480"
     CDS             11566..11844
                     /locus_tag="PXE26_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000738492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bor family protein"
                     /protein_id="HDL5594052.1"
                     /translation="MKKLLAIATVFSLAACSTQTLELSPAKEAQYDRVQHFFVSGLAQ
                     KQEIDAAKICNGADKVGKVETETTFFNGLLGTITYGIYSPRQIRVYCN"
     gene            11869..12165
                     /locus_tag="PXE26_001481"
     CDS             11869..12165
                     /locus_tag="PXE26_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bor family protein"
                     /protein_id="HDL5594053.1"
                     /translation="MKKLLAMSVLTALLTTACTTQTAHIGGKVTDNIKPTKSVTQSFF
                     IGGIGQEETLNVVEVCGSKDKVQQVETVLSGGDILLGLVTIGIYTPRTANVYCK"
     gene            complement(12218..13009)
                     /locus_tag="PXE26_001482"
     CDS             complement(12218..13009)
                     /locus_tag="PXE26_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5594054.1"
                     /translation="MGILTGKRILVTGLASNRSIAYGIANAMKQQGAELAFTYLNDKL
                     KPRVEEFAKEFGSDIVLPLDVATDESITECFTELSKHWEKFDGFVHAIAFAPGDQLDG
                     DYVNAATREGYRIAHDISAYSFVAMAQAARPFLNENAALLTLSYLGAERAIPNYNVMC
                     LAKASLEAATRVMAADLGKEGIRVNAISAGPIRTLAASGIKNFKKMLSAFEKTAALRR
                     TVTIDDVGNSAAFLCSDLASGVTGEVLHVDAGFSVMAMGELGDEE"
     gene            complement(13153..13926)
                     /locus_tag="PXE26_001483"
     CDS             complement(13153..13926)
                     /locus_tag="PXE26_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FNR family transcription factor"
                     /protein_id="HDL5594055.1"
                     /translation="MKIVSEPKTSGRHTCTIHCQNCSISQLCLPFTLNETELTQLDNI
                     IERKKPIQKSQVIFKLGDELRSLYAIRSGTLKAYTLSESGEEQITGFHLPGDLIGFDA
                     ITNMQHEGYAQALETSMICEIPFDILDDLAGKMPKIRHQIMRLMSNEIKSDQEMILLL
                     SKMNAEEKLAAFLYNLSQRYSARGFSAKEFRLTMTRGDIGNYLGLTIETISRLLGRFQ
                     KSGMISVQGKYIIINRMEELAELAGAIKPQQNIIAQTTA"
BASE COUNT         4177 a         2491 c         3142 g         4121 t
ORIGIN      
        1 accagagtta tatttatgac taataagaaa attcagaaag ctattgaact tgtaggaaca
       61 caaacaaaat tagctgaagc ttgtggagtt agtcagccta cggtcttgaa atggctaaac
      121 ggaggcggaa tttccgctga atatctacta aaaatcgaag ctgccacaaa cgggcaggta
      181 acaattcgtg aaatttgtga ggagttggga aatgcaacag caaaataaaa gccctgaaca
      241 ggcagggcta gcgagtggga aatttactgt aagacgtaat caagacggta aatggcgttt
      301 agatttgacc ttgttggatt ttggtattag ttcgccagaa acgactcaag ctcgttgcaa
      361 attgcttcaa gagcttcagc ttgctcttct tcaaggtcaa ggtcatttaa atactgtcgg
      421 cgtgaacgtt cgaaaagccg gtccagtcgt ttgcgttggt agtctgttaa gcgacctttt
      481 aaatcatcaa gaataatgtt tttggcgttt agttgatggc gtaagttttc aacttcaaca
      541 gtcagttcaa taatttgatc ttcagtattc ataaaatttc cttttggagg gttaaacaat
      601 atctaaaaca taaccaaaat tcgactgctt gtctatgggg atagataagc cgaaatcaac
      661 gtaaagaatg ttaatagagc cttggggaag gcgtagggga aataatgaat ttagaccaca
      721 cctgtacaaa ttgcaaaagt aaaaatttac gggttcgtac atctgaaaaa atcggtttgc
      781 tgactattca ggctgttact tattgtaata actgcggcac agagcaactt gtgcaaagtc
      841 aaattatccg tgttcgcaca ccgatttata aagagcgacc ggaagcaatg cgtattaata
      901 aatgcttgat ggaagccgat ttgaacacgc cggatttgtt cgatggcgtt gtggcagacc
      961 aacctaagca agactaatcc caatttttaa acaatcgtca aaataagcct tatttgcata
     1021 gggcgagatt tttgcaccct aaattcagga atttgaacaa tgagtaagca attatattac
     1081 cgacacaaat cacgttggaa cagacttaac cgccttaaga agatgaataa acgtcgcctt
     1141 aatctgtttt tgcaagaaaa gcgggtggcg aatttagaaa gccggttagc tgatgaagta
     1201 gagctggcaa agctgaatag tgagcagatt ggcgatttac tgcaagcgtt ggagttaaaa
     1261 gtgaatcggt taattcgcca aaatgaaaag ctgaaagccc gtgtgattaa gctggaaaaa
     1321 gtcaaacaga cccaaaagca aggtttgttt gcaatgttta aaaaggtgtt gggtagcaag
     1381 ggtaatcctt agtaagaggt agatatggat ttcgtggcaa cgtatcaaaa gatacgcatt
     1441 aacactaatc acaagcaatt tacttgcaat cacttaggcg agatttgggg gaaggaaaac
     1501 gacgatttta aacgtttctt actacgagtc gcattcttgc aggataaccc cgagccgaaa
     1561 ccttggggag cgtattcccc acaagaaaaa cgccttttac atagttttag cttgtggtta
     1621 gagcagatag cagattttca gcgagtaatg aaaagagaat caaaactgcg tgaaaaacat
     1681 attaacgcac cggattagaa ggagtaaata tgagccgtaa ccgtgaattg tgtgagtttt
     1741 ttcacaaact gtggtgcaaa accggtaatc gctatgctta tcgccggtat caagtgtttt
     1801 ttcagcgtta tcaaaacgaa tgtttagtga atgagtagag ggtagaaaaa tgtcattaat
     1861 tactgtgaac gattacaaaa tcaagaaaga tattttagat gcagacggca agccgtgtta
     1921 tcagttgtat caaggcgaag agctattgcg tgataccacc aatttaagcg aaatcatcgc
     1981 ttatatgttt attcgtgccg aagataaacc gtttgatgag ttgtataacc atatcatcaa
     2041 ccaagaagca ggagctaaaa cagatattaa atttacggta acggtgagat gagccagatt
     2101 actaaatccg cttacacaca tattcaccca aactggcaag ccccgagagg taacacttac
     2161 cggattgagc gatatgagct aaaacggcgg tatgccttat tttgtaatgg tgagagggta
     2221 gttttatata aagacccaac acaccccaat aagaacgtag agagccatat agaaagtgat
     2281 gttttgttgt tatggctact gaaaaatgaa ttagggtgga gcggtaatat taaagagccg
     2341 ttaagccctc aagatgttga gaatatccgc ttgttagagc aagcattttg tttaacttat
     2401 aacggaactt tcattaaatg aattatcaga atgagattct atctgctaca gaggctttcg
     2461 caataggtgt ttcactccca cctgttgccg gtgcttctgc ttgtgcatta gagcttcatt
     2521 ctgatcgttt atatcaagcg ttcaaacagc cttacacttc aatggtccag caagaattat
     2581 tctcgaaaga ccctattcac gaaccgttac gccaatctta ttttgagcgt ttgcctcgtg
     2641 ccttagcaga gcatttcggc agacagtata agcaaaagct acattaccaa agccaatacg
     2701 acacagcaga ctggttcaaa gcggaaatgg cacgcaaaat gccacgcatt gaggcagtta
     2761 ttagccagta ttgcgatgta ttcgattttc tgaagcaatc ccatcaagat ttagattttt
     2821 tagctgaatt agatagtaat gtttatttcg gtgccggtgt tgatacgcaa caagcggtac
     2881 aaaaaattaa acaagatgcc gaagtgaaag gtattcaact gcctatgcac ctttgccgtt
     2941 tagagaatag ctctcgctat ttaaaagctc acggcattcg cccgcttgct taccaaaccg
     3001 aagagcaaat caaacagctt gccttaggta ttgcttatcg tgttcgccaa attcagcaag
     3061 ataacatcga gcagaatatg cacaaagcga cagatggcga cacagcctat agtgtgttgc
     3121 ttgaatgcta tcgggcaatg atgggagagg taaataagct caagattgat tcgccttatc
     3181 agaaaaaagc gagaaagggt agattaactg aagaggaaat taccacaggc tttttaaaaa
     3241 tgacctgtga aaaatggtgg actagaaagt tatctaaaat tgccgaacag atgaaagagc
     3301 atttagctat tgcgtgcggt atggtgaata tgctttcgcc ttactgttca aatgctcgct
     3361 tgaaagcgtt tgaggctcaa cgcaaggcga atattgatta tttgaaatca atgatcattg
     3421 ccaatatcgc cgagccggaa gagcaacttt cattatttga aacgtggttg aagtctgcct
     3481 ctaacccgaa aattaaacgc cttgaattac tcactcgtat gaatggattt gagcgttatg
     3541 cagataagca agggcacgag gggtggttta ttaccttgac tgctccgtct aagtatcacg
     3601 caatgctttc aagaaccagt agcgtgaacc cgaaatggaa tggagcaagc cctgcggaaa
     3661 cacaggttta ccttgtgaat acttgggcga aaatccgtgc caaactcaac cgtgagggcg
     3721 taatggctta cggttttcga gtggctgaac ctcacgctga cgctacccca cactggcatt
     3781 taattctatt cactcgtccg gaagatatgg aaaagcttcg ccgcgtgttc ttgagttatg
     3841 ccttagaggt cgatggcaca gaagccggtg cgaaaaaata ccgttgcaaa ttcaagcgta
     3901 ttgagaaaga gaaaggctcg gcaacgggct atttagtgaa atatgtttct aaaaacattg
     3961 acggttttgg aatggacggc gagctttcag acgaggcaaa tattcaggcg aaagagaatg
     4021 ccgctcgtgt aggagcgtgg tctagcgttt ggtgtattcg acagttccag cagttaggta
     4081 atattccgat cagcttatgg cgtgagttac gccgtttggg gagtgtagag caagaagatg
     4141 aaactttaga gaaactccgt gtgattgcag atagcggtga gtgggacgtt ttcaccgaag
     4201 aattaggcgg tgcgttggtt aaacgtgccg atttagttgc acgtattact tataccgaac
     4261 gcaaaagcga aaccggtgag gcgttatata cgatgtatca agagccatca ttaaaagtga
     4321 gcggcattat taacattaaa aacggtgtgc agattaatac acgcccgaaa gagtggagca
     4381 ttcaacttaa acctaaaaac tgggaggagc aacaattaca gaaaaaatta gaaaatgcaa
     4441 ccgaaacgga acgagcggag gttaaacgta aatactacga gaagttaggg tttaacgaag
     4501 aggctatcgc tttattaggg gagcttgctc ccccttggac ttgtgtcagt aactgtacgg
     4561 ggtcaaaaaa taatcagatt agtgaagagg ctcgaaattg cctaagaaat gaactgatta
     4621 caatgcgagg acgggttact gaacatcaaa tagacgattt actaaacggc aagcggttaa
     4681 aaatttgggg aaattcgcaa aaaacaatgt ttgtgagtta tagccgtggg cgtttaattg
     4741 agcatattgt tgataattat gagagttttt tgaattagga tattaagaaa atggttaaat
     4801 ttattcgttt aaatttgatt aattatttca ttgagaaaga tgaatatgga gaaccggtgc
     4861 gttgcagagc gtttcgttat gatgagatta ttcaaactaa gtttattgaa ggatttcgag
     4921 agggagagat accagctgat gattatggat ttgaagattg gaatggttcg gttctgattt
     4981 taaatgaaga aggacgtaaa tattttgaga actatctttt tgatgtaaag aagaattatt
     5041 gtagagcaag ggataactat gtatatgtct tggaaacttt agacgaaatt gaaatgaagt
     5101 taggattatt ggaggcgaaa taatgaactt agtcacatta gtcggacgtt tggggcaaga
     5161 ccctgatatt agaacaatgc aaaatggtga gaaagctgcg gctttatcgg tagcgacctc
     5221 tgaaaagtgg acagataagc aaacaggtgt gaagaaagaa agcaccgaat ggcatagggt
     5281 ggtgctttat cgccgattag ctgaaatcgc cgaattgtat gtaaaaaaag ggcatttggt
     5341 atcaattatc gggaaaatta aaacccgaaa atggacggat agcaacggtg ttgagcggag
     5401 tattacagag attattgccg agcagatgca aatgctcagt agtggtgaga aaaatacgcc
     5461 aaatacgcca aataaggcag aaaataaacc gcaaccaaag cagaaaaatc aagacgtgat
     5521 gactgcggac gagcagaaag atattccgca gtttgatgat gatattccgt tttagggggt
     5581 gaataatgag agaatgggaa aaacaaatgc catttagtgc aaatttacat ataagaccta
     5641 caggaaaatt tgaagtgaaa aatgtaaaca tagaacaaat aatcggagaa cgtggcaaaa
     5701 attacggcaa ctttgatgat gttgccacaa tgagccagca gttaaaagca gtgttgctgg
     5761 ataccaatac tcaacttaaa ccacatcaaa aagaggcagg cgagatgatc tgcttgaaac
     5821 tggctcgcat ttttgcaggt tgtaatccgg actatgaaga taactggcga gatattgcgg
     5881 gttatgcggt gctgggaggg aaattaaatg aaaaataaaa tggggagtaa atttatacga
     5941 gtcagagttg agcatccaca gcggaaaaaa gaagatattg agcttgtgca ggatgtggtt
     6001 gcttatcata tttttaatct ttttaaattt gaggaaagtg ggttacgggg gtttagtcag
     6061 tatgatttgg aaattgatgt gaaagttaag ccagtgttag aacaaaaaga aatgcctgta
     6121 gatgtttgga ttgatgattt aggtggtaaa aatggaacaa ttacaagcgg tcagtaatga
     6181 gcaagttttt gcaaaacttt gtgaggttga gcggttatta aaaaccaaag gggtgaatga
     6241 gcatagccgt gaattgtggg atttgggcga tgtagcagca tatttcggct acactaaaga
     6301 acacaccagc cgaagtgttg tatctagtcc acattttccg aaaccgattg cccttgacgg
     6361 cttacgaggc aagggcaggg gggcgaagaa gtgggtatcc ggtgaagtgg tgaaattttg
     6421 tttgatgtgg aaggtgaagt gatgataaaa aagataattt tagatgcttg ttgcggtagc
     6481 cgaatgtttc actttaataa gcacaacccc tcggtattgt ttgctgacaa tcgggaatcc
     6541 ctgtatcgaa aattttaaat gttatcgaat accaacctat ctatgggcat aaaagcggta
     6601 aacataacaa aacgcattgg ctggcatttg taaagatgga taataacgat tatttgtaaa
     6661 gtatttcaaa atacaaaagc cgataaattt cattatttat cggcttttgt tttatgggtt
     6721 gttttgcttg aattgttgaa tagcttgaat aatcagctgg ttttgtggaa tgttgagttt
     6781 ttggctaagt acttcgattt ctgcgatcac ctcaagcggt agtttaaagg atttttgctt
     6841 tattcctcgt tttgcctcgc ttttagcttg gatttcattt cttgacattg ccataattta
     6901 tccctattat aaattttgtt gaagagctgg gagctttcac ccccagcgag ttgcttcaga
     6961 ttagtaagct ggggagctaa ggactaataa gaagacaact aggataatgt atttaaacat
     7021 tgtgctatcc ttcttcattt cgtaaggttt aagccttacg ctcactttca agctgtctct
     7081 tgaaagtgag gttattataa tgtagggtat cctacattgc aagtaataaa tacaaaaaag
     7141 ccgataaatt ttcgtttatc ggcttttgtt tttattgcag tttgctcaca agttctgaaa
     7201 tatccgggtt atagtaggta ttttgcaaaa tacttaaatc tcgatgcccc gatactttgg
     7261 caagctccat taccgtcaga tatttagaca aacgtgtgag tgcctctcgc cgtgtgtcgt
     7321 gaaaatgcag atcggcattg tgtagattgg ctttttgttt cagcttgcga aaattcgaat
     7381 caaggctgcg actggtgagc tggaaaacac tgttttgctt gttcggttca agttgtgcca
     7441 actgatttaa aattgctatt gctttggttg agagtggcac ggtgcgtgaa taaccgtttt
     7501 tggtttgtgg caaaaatgcg gtgcgtgcct gcaggtttat atgttcccat tttaaaccag
     7561 caatttcacc cgctcgcatt gcagtctcaa tcgcaaataa tagtgctgct ccggctcttt
     7621 gttgcattaa tagcggtggc tggttagggc tgtagccgga gacaaaaatc agtttgtcta
     7681 tctcctcatc gctatatcgg cgagttcttg ctggtggcgt tttgattttt tccagcgttt
     7741 ttagaggatt ttctttgaga taatcccatt ccattgcttt tgtaaagagt gccgataaag
     7801 tggctctttc tcttgagacg gaaaccggct gcacttcttg caagcgttgg ttttgccatt
     7861 ggcgtaaatg ctctttggtg agtgccggta atggtatatt tcccaagttg ctgccggcaa
     7921 ttcttagcag gcgatagcgt tcttcccttt tgccacgttt ggtcggagtg acctctttga
     7981 ggtatttgtc gattaattcg gcaaaaagaa tgttcggggt ggtgttatat tctccggcat
     8041 caatttgagc ctctaaagcg taagcccagc ggtttgcctc tgttttggtg ctgaaagtgg
     8101 cagttttata aatgcctttt ttgcggactt gtgctcggta tttgttgccg ttcttaataa
     8161 tagtagccat ttttttattc ctttgtgtat gtgtgcagtt taagtgtgca aatgtgtgca
     8221 aaggaatgtt aatagagatc ataaacgatc aataaatatc aagttttcat atcaaaaatg
     8281 atgtttttat tgatgttatg ctacacttgg ggaagtgttt taaatcaata agctattgat
     8341 ttataagggg tatttttggg gttaagcctg aatggggata ttcaggctta aaaataatgg
     8401 tgcgactagc tggactcgaa ccagtgaccc ccaccatgtc aaggtggtgc tctaaccaac
     8461 tgagctatag tcgcattaac ggtgtgcatt ctattggaaa aaggaactta gtgcaatatg
     8521 cttttggtcg aatgctttta ttttagacgc ttttgggtaa aaatttgttt atcttcccaa
     8581 cggagcatgg ttaaatggct tccccaagca cagccggtat caagtgcata gatgtttgga
     8641 cgagtgcatt tgcccattag gcttgcccag tgaccaaaga taatgttttt ctgtgtaaat
     8701 aacggattat ctaagtcaaa ccaagccagc agttcttgag gggcttgttc aagcggtaat
     8761 ttacagtcaa aatctaaccg cttgtcggtg tagcaaaacc gcatacgggt aaacacattg
     8821 atgatataac gccaacgttc aacaccttgc aaatcttcac tccagcgttc gggcttattc
     8881 tcatacattt gggcgatgta gtccgcataa ttgtcacttt gtagcacctt ttctgcctct
     8941 ttggcacaag ctagggtagt tgctaaatcc cactcagggc tgattcctgc gtgagtcagc
     9001 aaaaattgat gtttggggtg atgaattaca agcggttgat ttctgagcca attttgcaaa
     9061 tcgagccgat ctttagcctc aaaaatagca tcaatcttat catttggttt tacccgtttg
     9121 atgccaagca agtgcaaatc gtggttgcct agcacggttt tggcattgtt tgcagagtct
     9181 ttcacaaaac gtaaacaggc taaagagtcc tcaccacggg cgactaaatc ccctgttaaa
     9241 aagagttcgt cttgcttggg gttataattg actttttcta ataaaagctg aaattcgtta
     9301 aagcaaccgt gtaggtcgcc tacaatataa gttgccattg tttctccttt gttcccctaa
     9361 agttataaac aagcggttat attttagaga aaatttgcaa aatctcatca aaatataacc
     9421 gcttgaaatt taaatgatat ttcctacgat tgagcgggtt tctaagcgta cttcggtgag
     9481 tttcactttc accgcttgcc cgatctgata ggctttttca cctttaatat aaagtgcaag
     9541 ttcttcttgg cggtattcca tttcctcttt gttgtcgtgc aagctggaga atggcacaaa
     9601 aatttgagca ccgtttttta tgactttcgc acgcaagcca ccacgggaaa catctgcaat
     9661 ttcgcactca aattcgaccg cttgttccac cattggggca aggtaacgag cataaagcca
     9721 gtcagcaata tcacgttcta ctaaacggtt ttgacggcga gcttcttgta aacggcttaa
     9781 aactgattct tccaccgctt ggctttgttt gccaagtaac acttgcttga ttaaacggtg
     9841 gtttaccata tcgccatatt tacggatggg tgatgtccaa gtggcgtaat cggtaatgcc
     9901 tagtccgaaa tgcggggcaa cttcggcttt aaattcagcg aaggttaaat aacgtcgtaa
     9961 acgcaactct aagaatttct ctgggtagtc ttgaatatca cgttgcattt ggcaatagcc
    10021 ttctaaggtt gctaaacgct cggcggagta gcgttcggca agctcatcac gattttcatc
    10081 gctggctaaa gtttggagta aaaatgattt taccaattca taatttttcg gatcaaaacc
    10141 tgaatgggta ttaaatacac cggttttggc atgttggctt aagaattttg cacaacaaat
    10201 attggcaaga atcattgatt cttcgatcat ttgattcgca atacggcgat attcaacgtg
    10261 aatatctttt accgagccat cttcatttaa ctcaaaggta taatcgcctt gttctttgaa
    10321 tagcaacgca ttctcggcac gccattgaat gcgggcttga gtaaattgat gtagccactc
    10381 aatttgttgt tttgtttctt cagactgagg ttgccacgca ttttccacgc cttcgagata
    10441 atcggaaaca tcgtcgtaag ccaagcgatc ttttgattcg acccaagcag aggtaaaggt
    10501 tgtctcttta atgagattgc cgtttaaatc ggtttcaata aagccaacga gggcagggcg
    10561 tttttcattc gggacaagcg aacagagatc gtctgagagt tctcgaggta acattggaat
    10621 gttaaagccc ggcaaatagt tggtgaaaca acgctggcga gcggcttttt caatatggga
    10681 attttctggg atataagcgg ttgggtcagc aatcgctacc actaaacgcc agccggttcg
    10741 cttgccattt tgcttaattg gttcgatgaa cagagcatcg tccatatctt gcgtgcttgg
    10801 gctgtcaata gtggtaaagt aaagatgaga taaatcttca cgagctaatt catcgtgtaa
    10861 ttcatagttt ttttcatttg cgaccggttc acgaggctgt tcgtggcggg caagtgtgac
    10921 ccaccaaggg gcaaaattat cagattcttt acagataaat tgggtaactt gagcaaagaa
    10981 aaaacggtcg tcacgcaatg ggtgcgtttt taattgtgca accacccagt cgccattttc
    11041 taatttttca gtggcttttt tatgggtatt tgccgggata gtttgcttaa tgcttgggtg
    11101 atcaaccgca agttgcaatt tgccctcttt attcaagcga acttgggcaa taaatctatc
    11161 cagcattggc tcaagtagtg aatcaatttc tacctgttct ttgtcgccat cacgtttgac
    11221 tacggctttc actgaatcac cgtgcattac ttttttcatt tccgcaggtg gaataaaata
    11281 gcttttttta tcgcattcta aaaaaccgaa tgctttgtct gaggctttga caacgcctgc
    11341 gacatattct ttgcttgctt caatttgttg tttgagttgg gctaaaaggg gattgttttg
    11401 aaacataatt tctcatttta aaaataaaaa aaggtgctat cgttgcaccg aaaaaaacaa
    11461 tggcattata acggatttga accaagttca gcaaataaat gctgttgcta taacttataa
    11521 aggttggtag aatataatcc atttaaaaat aatggagact tttcaatgaa aaaattactt
    11581 gcaattgcaa cagtattttc tttagcagcc tgttctactc aaacacttga actatctcct
    11641 gctaaggaag ctcaatatga tcgtgttcaa cacttctttg tttcagggct tgctcaaaaa
    11701 caagagatag atgcagcaaa aatttgtaat ggtgcagata aggtaggtaa ggtagaaact
    11761 gaaactactt tctttaatgg cttgttaggt acaattactt atggtatcta ttcacctcgc
    11821 caaatccgtg tatattgtaa ctaatcctag taatttaagg agttgaaaat gaaaaaattg
    11881 cttgctatgt ctgtattaac agccctgctg actacagcat gtacaacaca aactgcccat
    11941 attggcggca aagttactga taatattaaa ccaactaaga gtgtaactca gtcgttcttt
    12001 ataggtggga ttgggcaaga agaaacattg aatgttgtag aggtttgtgg ttccaaagat
    12061 aaagtgcagc aggttgaaac agtactttca ggtggggaca ttctattagg tcttgtgact
    12121 atcggtattt atacacctcg tactgcaaat gtatattgta agtaatattt tattaaaaaa
    12181 ataacggact caattgagtc cgttattttt ataggaatta ctcttcgtcg cctaattcac
    12241 ccattgccat tacgctgaag ccggcatcaa cgtgtaacac ttcacctgtt acaccagagg
    12301 ctaaatctga gcataagaaa gctgcagagt tacctacatc atcaatagtt acggtgcggc
    12361 gtaaagcagc ggttttctcg aaagcagaaa gcattttctt gaagttttta atgcctgaag
    12421 cagctaatgt acggatcggg ccggctgaaa tcgcatttac acgaatacct tctttaccta
    12481 aatcggctgc cattacacgg gttgcagctt ctaaagaggc tttggctaag cacattacat
    12541 tgtagttggg gattgcacgc tctgcaccta agtaacttaa ggttaaaagg gcggcatttt
    12601 catttaagaa ggggcgagca gcttgagcca ttgcaacaaa gctataggca ctgatgtcgt
    12661 gtgcaatacg ataaccttca cgggttgcgg catttacata atcgccgtct aattgatcgc
    12721 ccggtgcaaa tgcgatagcg tgaacaaaac cgtcaaattt ttcccaatgt ttgcttaatt
    12781 cagtaaagca ctcagtaatg ctttcatcgg ttgctacatc taacggaagg acaatgtctg
    12841 agccaaattc tttggcaaat tcttcaactc gtggttttaa tttatcgttt aagtaggtga
    12901 atgcaagttc tgcaccttgt tgcttcattg cgtttgcaat accgtaagcg atcgaacggt
    12961 tgcttgctaa acctgtcact aaaatacgtt taccagttaa gatacccata aaaattcctc
    13021 ttttatattg attggggcaa aattgtgtcg attataacgg atataggaaa aacgggcaaa
    13081 tggagttagc ggctcatcgg atcagaaatc cctttttgaa cgaggtttca aaaagggatt
    13141 tggtaagata aattaagcgg tagtttgagc aataatattt tgctgcggtt tgattgcccc
    13201 ggctaattcg gctaattctt ccatacggtt aataataata tattttcctt gtactgaaat
    13261 cataccgctt ttttggaaac gccctaataa acggctgata gtttcaatgg ttaaaccaag
    13321 ataattgccg atatctccac gggtcatagt tagacggaac tcttttgcag agaaaccacg
    13381 ggctgagtaa cgttgggaaa gattatacaa aaatgcagct agtttttctt ccgcattcat
    13441 ttttgagagc aatagaatca tttcttgatc gcttttaatt tcattactca tcaaacgcat
    13501 aatttgatgg cgaatttttg gcattttgcc ggcaagatca tctaaaatat cgaatggaat
    13561 ctcacaaatc attgaggttt cgagtgcttg agcatagcct tcgtgctgca tattggtaat
    13621 tgcatcaaag ccaattagat cgccaggtaa atggaaaccg gtaatttgct cttcaccact
    13681 ttcacttaag gtataggctt ttaatgttcc agaacggata gcataaagcg aacgcagttc
    13741 atcacctaac ttaaaaataa cttgcgattt ttgaatcggt tttttacgct caataatatt
    13801 atctagttga gttaattccg tttcattaag agtaaaaggt aagcatagtt ggctaatact
    13861 gcaattttga caatgaattg tgcaagtatg acgtccgctt gttttaggtt ctgatacaat
    13921 tttcatccat t
//
LOCUS       DANLZD010000070        13816 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.070, whole genome shotgun sequence.
ACCESSION   DANLZD010000070 DANLZD010000000
VERSION     DANLZD010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13816
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.070"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(90..806)
                     /gene="rph"
                     /locus_tag="PXE26_001484"
     CDS             complement(90..806)
                     /gene="rph"
                     /locus_tag="PXE26_001484"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001261764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HDL5594056.1"
                     /translation="MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVE
                     ESVPRFLKGQQQGWVTAEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVV
                     DLKALGERTVTVDCDVIQADGGTRTASITGACVALYDAMNKLVANGTLKTNPMKGLVA
                     AISVGIVAGEAVCDLEYLEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLL
                     DLAKQGISQLVEAQRKALAE"
     gene            1087..1950
                     /locus_tag="PXE26_001485"
     CDS             1087..1950
                     /locus_tag="PXE26_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011272075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HDL5594057.1"
                     /translation="MIYSMTAFAHLEMKKEWGNAVWEIRSVNQRFLETYFRLPEQFRN
                     LEMTLRERLRSALTRGKVECSLRIDLSKTQNSEIALNKEYAAQVVQSLKWLKETANEG
                     EINLVDVLRFPGVVDNESQDLDQIAQDLLAGFEQILADFIAMRAREGENVQALILQRL
                     EAISVEAAKVQAQMPEILQWQKDRLQQRFDELNLQLDPQRLEQEMVLLAQRVDVAEEL
                     DRLQLHVKETTNILKKGGAVGRKLDFMMQELNRESNTLASKSINADVTNSAVELKVLI
                     EQMREQIQNLE"
     gene            1959..2849
                     /locus_tag="PXE26_001486"
     CDS             1959..2849
                     /locus_tag="PXE26_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein YgfZ"
                     /protein_id="HDL5594058.1"
                     /translation="MAMNFKQVSQSYPNLCVPLSQYCLIEIAGVDAEKYLQGQLTCDV
                     AKISVGEHTLTSHCDPKGKMSALLRLYRAENEKFMAIIHRSLLPEALTQLKKYAVFSK
                     VTFTELDTPLYGMAGEAAFAKLSENMTALRLTTGQPRAIVWGEELETTADEQLWTLMD
                     IQDGIPVLLQQNQFELIPQATNLQALESAISFTKGCYIGQETVARAKYRGANKRALFT
                     LAGNFESEISLPEVASAIEMQLGENWRATGTVLTSATDENTLWVQVVLNKDVEPNTKF
                     RANGVALEMVELPYSLAENE"
     gene            complement(2881..3141)
                     /locus_tag="PXE26_001487"
     CDS             complement(2881..3141)
                     /locus_tag="PXE26_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001196283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HDL5594059.1"
                     /translation="MALLITHKCTNCDMCLPECPNEAISVGDDIYIIDPVLCTECVGH
                     YEKPTCQKVCPITNCIIKDPDNIETEEQLWERFVMIHHPDQI"
     gene            3371..3790
                     /gene="rbsD"
                     /locus_tag="PXE26_001488"
     CDS             3371..3790
                     /gene="rbsD"
                     /locus_tag="PXE26_001488"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005753460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HDL5594060.1"
                     /translation="MKKTLNLNAQLSHSIATLGHTDSLTVCDAGLPIPNTIERIDLAL
                     TAGVPSFLQTFDVVVSELFVERVLLAEEIKHKNPQVLAALLERLTQLEQTQQNKIQID
                     YVNHEIFKEQTHYSKAVVRSGECSPYANIILYSGVPF"
     gene            3800..5296
                     /gene="rbsA"
                     /locus_tag="PXE26_001489"
     CDS             3800..5296
                     /gene="rbsA"
                     /locus_tag="PXE26_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter ATP-binding protein RbsA"
                     /protein_id="HDL5594061.1"
                     /translation="METLLKMSGIDKEFPGVKALSNACLSVYGGRVMALMGENGAGKS
                     TLMKVLTGIYSKDAGSISYLGKEVTFKGPKDSQEAGISIIHQELNLVGNLTIAENIFL
                     GRESKTAWGAIDWKKMYAEADKLLARLGVKHSSHQLCAELSIGEQQMVEIAKALSFES
                     QVIIMDEPTDALTDTETASLFKVIRELKAENRGIVYISHRLKEIFEICDDVTVLRDGQ
                     FIGERVIADIDEDQLIEMMVGRRLEEQYPHLHQERGELLLEVKNLSGSGVNNVSFQLH
                     KGEIVGISGLMGAGRTELMKVLYGALPKTAGSIELNGKAISNHCPQDGLNNGIVYISE
                     DRKGDGLILGMSVKENMSLTSLDHFSKAGSIRHDAEKLAVDDFIEMFNIKTPSREQQI
                     GLLSGGNQQKVAIAKGLMTRPNVLILDEPTRGVDVGAKKEIYQLINEFKKDGLSILMV
                     SSDMPEVLGMSDRILVMHEGQISAEFSRAEATQEKLLAAAIGKSTGLN"
     gene            5306..6274
                     /gene="rbsC"
                     /locus_tag="PXE26_001490"
     CDS             5306..6274
                     /gene="rbsC"
                     /locus_tag="PXE26_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005753457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter permease"
                     /protein_id="HDL5594062.1"
                     /translation="MATQTKQFQLGRFLIEQRSFVALFILIVSVSMINPDFFSVDNIL
                     NILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLALTGAVAATLVGSELPILLVIPLVL
                     LLGTAFGGISGAIVAKGKVQAFIATLVTMTLLRGITMVYTDGRPISTGFSDQADAFAF
                     IGTGYLFGIPVPIWIMAVVFGLAWYILKHTPIGRYIYALGGNESATQLSGINVNKIKI
                     FVFAVSGFLSALAGLIVTSRLSSAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTL
                     VGALIIGFLNNALNLLDISSYYQMIAKALVILAAVLADNYLGTKKV"
     gene            6297..7175
                     /gene="rbsB"
                     /locus_tag="PXE26_001491"
     CDS             6297..7175
                     /gene="rbsB"
                     /locus_tag="PXE26_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006995182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter substrate-binding protein
                     RbsB"
                     /protein_id="HDL5594063.1"
                     /translation="MKKLTTIASAVMLSLSVAATASAKETIALAVSTLDNPFFVSLKD
                     GAQKKADELGYKLVVLDSQNDPAKELSNVEDLTVRGAKVLLINPTDSEAVGNAVAIAN
                     RNKIPVITLDRGAAKGEVVSHIASDNVAGGKMAGDFIAQKLGSGAKVIQLEGIAGTSA
                     ARERGEGFKQAIEAHKFNVLASQPADFDRTKGLNVTENLLSSKGDVQAIFAQNDEMAL
                     GALRAVSSAKKEVVIVGFDGTDDGVKAVESGKLAATIAQQPELIGSLGVETADKVLKG
                     EKVEAKIPVDLKVISK"
     gene            7296..8225
                     /gene="rbsK"
                     /locus_tag="PXE26_001492"
     CDS             7296..8225
                     /gene="rbsK"
                     /locus_tag="PXE26_001492"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HDL5594064.1"
                     /translation="MKKLTVLGSINADHVISVPYFAKPGETLTGHSCHIAYGGKGANQ
                     AVAAARLGAKVSFIGCIGSDDIGKAMKSAFEQDGIDTRSIKTIPNEMTGIAMIQVAES
                     GENSIVISAGANGHLDETVVAKCAAEITQADYLLMQLETPLPAIVQAAKLAQQNGTKV
                     ILNPAPARALPDELLNLLDMITPNETEAEILTGVKVVDEASAIQAAQVFHQKGIEKVL
                     ITLGSKGVFVSENGVGKIVAGFRVQAVDTTAAGDTFNGALVTAMLEDKPLDQAIRFAH
                     AAAAISVTRKGAQPSIPTRQETLDFLSQQAVSF"
     gene            8239..9249
                     /locus_tag="PXE26_001493"
     CDS             8239..9249
                     /locus_tag="PXE26_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL5594065.1"
                     /translation="MATMKDIARLAQVSTSTVSHVINNSRFVSEEIRERVQRVVKELN
                     YTPSALARSLKVNETKTIGMLVTATGNPFFAEVMAGVEQYCQQHQYNLIIATTNGDTE
                     RLQHHLQMLMQRKVDGLLLMCGDTRLNADESLNIPLPLVVLDWWFTELNADKIFENSI
                     SGGYLATKTLIEAGHSKIAIITGNLKKSLAKNRLEGYKKALAEANIPLNPNWVFESHF
                     DFAGGVNGMNALLAQSEKPTAVFACSDTIALGAYQAIWQQGLRIPQDISIIGYDDIEL
                     AKYLSPPLSTISQPKAELGRLAVETLLKRIRFKSTDFQTIMLEPELVLRHSIQTINKN
                     AE"
     gene            complement(9285..9914)
                     /locus_tag="PXE26_001494"
     CDS             complement(9285..9914)
                     /locus_tag="PXE26_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL5594066.1"
                     /translation="MTAPTQILLIDDHPLMRQGMRQLLELDHQFSVVGEASNGTDGIK
                     LALRLEPDVIILDLNMKGLSGLDTLRSLRAQGIDARIIVLTVSDEQSDVFALMDAGVD
                     GYLLKDTDTPELLDNIRKAAAGEVVLSETVRQHLLNRQPENDPLSCLTDRELDVLQWL
                     ATGMSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEQQKG"
     gene            10112..12271
                     /gene="rlmKL"
                     /locus_tag="PXE26_001495"
     CDS             10112..12271
                     /gene="rlmKL"
                     /locus_tag="PXE26_001495"
                     /EC_number="2.1.1.173"
                     /EC_number="2.1.1.264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 23S rRNA
                     (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA
                     (guanine(2445)-N(2))-methyltransferase RlmL"
                     /protein_id="HDL5594067.1"
                     /translation="MTNQTTYFATAARGFEEILKTELEQICAAECKVAQGGVHFTTTQ
                     KGAYQALLHSRLASRILLPLISTKIFSDSDLYASIVSFNWADLFDPRDTFYIDFSGTN
                     REIRNTQFGAMRVKDGIVDYFERKGFARPTVDKDNPDVRIHVYLDRENVVVSLDLSGD
                     ALHIRGYREETGKAPLRETLAAAIILRSGWKVGTPLVDPMCGSGTLLIEAAQMAANIA
                     PQLHRKHWGFNAWKGHQQAMWKAVLDEAFRNVELGAVGENCNSSLQKMFFGFDLDHRV
                     LTKAKQNAKNAGVDHLIQWQQGDVAALKNPIPEKIGTVVCNPPYGERLGTTPALIALY
                     SVFGQRLKQQFAGWNASIFSGEPELLNCLRLRSARQFKAKNGPLDCVQKNYSISEHNK
                     RSDLDENLQFEQNAQVAPDFANRLTKNIKKIEKWAKQQGIDAYRLYDADLPEYNLAVD
                     RYGDHIVVQEYQAPKNIDEQKARQRLLDAVSATLYVTGVETNKLVLKVRQKQKGTNQY
                     EKLANKGEYFYVNEYGAKLWVNLTDYLDTGLFLDHRLTRKMVGEMAKGKTFLNLFAYT
                     GSATVHAALNGAKSTTTVDMSNTYLNWAEQNLELNNLSLRHHRLFQADCLQWLAECRE
                     RFELIFVDPPTFSNSKRMENSWDVQRDHIELMKQLKRILTADGTIVFSNNKRGFKMDF
                     DGLAALGLTAENISHKTLPLDFERNPQIHNCWIVKNV"
     gene            12448..12927
                     /gene="trmL"
                     /locus_tag="PXE26_001496"
     CDS             12448..12927
                     /gene="trmL"
                     /locus_tag="PXE26_001496"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HDL5594068.1"
                     /translation="MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPFGFGWDDKKL
                     RRSGLDYHEFVDIQKYKNFEDFLERAKPKRLFALTTRGEQNHSDVKYELGDFLMFGPE
                     SRGIPKPLLAEMPMSQKIRIPMCKDSRSMNLSNSVAVVVYEAWRQFGYQNAVAAQSI"
     gene            complement(13021..>13816)
                     /locus_tag="PXE26_001497"
     CDS             complement(13021..>13816)
                     /locus_tag="PXE26_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Bro-N domain-containing protein"
                     /protein_id="HDL5594069.1"
                     /translation="QKSVRSHYDEEKDKWYFSIIDVIAILTESLDPSAYWRKLKQRLK
                     AEGNETVTNCHGLKMPSADGKMRLTDVADTEQLFRLIQSIPSPKAEPFKQWLAKVGYE
                     RLQEINDPSQSLDRARENWQKMGRSEKWIQQRMMGQETRNKLTDYWKSSGVEQPQDFA
                     FLTNVIHQEWSGLSVQKHKSLKGLKSQNLRDHMSEAELLFTALAELSSRQIAESMQAV
                     GVDENAQAGKQGGNIAKNARQELENKTGKSVVTGENFLPPAKNEEE"
BASE COUNT         3987 a         2711 c         3208 g         3910 t
ORIGIN      
        1 ataaaaaaat ctacatctga atcagaacgg ttattctgtt ttgtcagatg tagattttat
       61 ttaaaaagaa aatcaaaaag agaagtgaat tattcagcta acgctttacg ttgagcttca
      121 actagctggc taatgccttg cttcgctaaa tctagcaatg tcagtaattc ttggtgcgag
      181 aacggttcgc cttctgccgt gccttgtact tccactaaac gaccatcttc gaccatcacc
      241 acgttcatat cagtttcagc gttggaatct tccagatatt ctaaatcgca caccgcttcg
      301 cctgctacaa taccgacaga aattgctgcg actaaacctt tcattgggtt agtttttagt
      361 gttccattag ctactaactt attcattgca tcgtacaatg ctacgcacgc accggtaatt
      421 gaggcggtgc gagtgcctcc atcggcttga ataacatcac aatctacggt aacggtacgt
      481 tcgcctaagg cttttaaatc taccaccgca cgcagagaac gggcaatcaa gcgttggatt
      541 tccattgtgc gtccgccttg tttgcctttt gccgcttcac gctgagtgcg agagtgggtg
      601 gctcgtggca acataccata ttctgcggta acccaacctt gttgctgacc ttttaaaaag
      661 cgtggcacgc tttcttctac cgtagcgtta cacaatactt tggtttcgcc aaactcaatt
      721 aataccgagc cttcggcata gcgagtgtag ttacgggtaa ttttaatttc tctaacttgg
      781 ttgtttgctc gattatttgg acgcattttc ttttcctttt gctaaaattt ttaccatttt
      841 agcaaagaac acagtaaaat gtgatttttc tttagcaaag aatttacata gccctcgccc
      901 cttgtgggag agggacggat ttttcttcgt tcagaagaaa aatcagggag aggggtaagc
      961 ggttattttt atctcaaatt ttacaaattc ctccctctct ctgaaaaata tttctgaacg
     1021 aaatattttt cggtctctct ccctcaaggg gagagagctt tacttataaa aacacaagga
     1081 ataccaatga tttatagtat gacagcattt gcccatttag aaatgaaaaa agagtggggc
     1141 aatgcggtgt gggaaattcg ctcggtaaat caacgctttt tagaaaccta ttttcgtttg
     1201 ccggagcagt ttcgcaacct agaaatgacc ttgcgtgagc gtttacgttc tgcactgaca
     1261 cgaggcaaag tagagtgtag cttacgcatt gatttaagca aaacccaaaa cagtgaaatt
     1321 gcgttaaaca aagaatatgc cgcacaggtg gttcaatcat taaaatggtt aaaagaaacc
     1381 gcaaatgaag gcgaaatcaa ccttgttgat gtgctacgtt tcccgggcgt ggtggataat
     1441 gaaagccaag atttagacca aattgctcaa gatttattag ccggctttga acaaattctg
     1501 gcagatttta tcgcaatgcg agccagagag ggcgagaacg tgcaagccct gatcttacaa
     1561 cgtttagaag caatttcagt tgaggctgca aaggtacaag cccaaatgcc ggaaattctg
     1621 caatggcaga aagatcgttt acaacaacgg ttcgatgaac tgaatttaca gcttgatcca
     1681 caacgcttag aacaagaaat ggtgttactt gcccaacgtg ttgatgtggc ggaggaatta
     1741 gaccgcttgc aattacacgt taaagaaacc accaatatcc tgaaaaaagg cggtgcggtt
     1801 gggcgtaaac tggattttat gatgcaagaa ctaaaccgtg aatccaacac gctcgcctca
     1861 aaatcgatta atgcggacgt gaccaattcg gcggtggagc tgaaagtgtt gatcgaacag
     1921 atgcgtgaac aaattcagaa tttagaatag gacagattat ggcaatgaat ttcaagcaag
     1981 tgagccagag ctatccaaat ctctgcgtgc cgctttctca gtattgttta attgaaatcg
     2041 caggggtaga tgctgagaaa tatcttcaag ggcaattaac ctgcgatgtg gcaaaaattt
     2101 cggtgggcga acatacgcta accagccatt gtgatccgaa aggcaaaatg agtgcgttac
     2161 tgcgtttgta tcgtgcagaa aatgagaaat ttatggcgat cattcaccgc agcttattgc
     2221 ctgaagccct gacgcaactt aaaaaatatg cggttttttc aaaagtgacc ttcacggaat
     2281 tagacacccc actttatggt atggcaggtg aagcagcatt tgcaaaatta agcgaaaata
     2341 tgaccgcttt gcgtttaacc acaggacagc ctcgggccat tgtttggggc gaagagcttg
     2401 aaacgactgc cgatgaacag ctctggacat taatggatat tcaagacggc attcctgttc
     2461 tcttgcaaca aaaccagttt gagctgattc cacaggcaac caatttacag gcacttgaat
     2521 ctgcgatttc attcaccaaa ggttgctaca tcgggcaaga aacggtagcg agagcgaaat
     2581 atcgtggggc gaataaacgt gctttattta cccttgccgg caactttgaa agcgaaatca
     2641 gcttaccgga agttgcttct gcgattgaaa tgcaactggg cgaaaattgg cgagcaaccg
     2701 gcactgtgtt gaccagtgcg actgatgaaa ataccctgtg ggtgcaagtg gtgctgaata
     2761 aagatgttga acctaacacc aagtttagag ccaatggtgt agcgttggaa atggtcgagt
     2821 taccttatag tttggcagaa aatgagtaaa acgaacggtc atcagggtat gaccgttttt
     2881 ttatatctga tcagggtgat gaatcatcac aaaacgttcc cacaactgct cttcggtttc
     2941 gatattatca ggatctttga taatgcagtt ggtaatcggg caaactttct ggcaagtcgg
     3001 cttttcataa tgcccgacac attcggtaca taacaccgga tcgatgatat aaatatcatc
     3061 gcccaccgaa atcgcctcgt tcgggcattc cggcaagcac atatcacagt tggtacattt
     3121 gtgggtaatt aataaagcca tagtttatat tgagaaaata aaaattaaac aagcggtcga
     3181 ttttgcaaaa aaatttgcaa atcttaccgc ttgtcactaa atgctaccta ttataaagca
     3241 aaataatttg aactacttca catttttgca atttggttgt ttatccgatt aagaaaattt
     3301 tttatgatgc catcgaaacg tttcgatgga gtattttcca acgtgatgga gcgaaaataa
     3361 aggggttagt atgaaaaaaa cgctaaatct aaatgcacaa ctttcgcaca gtattgcgac
     3421 actcgggcat accgatagtt taacggtttg cgatgccggt ttgccgattc caaacacaat
     3481 agagcggatc gatttggctt taaccgccgg tgtgccaagt tttttacaaa catttgatgt
     3541 agtagttagt gaattatttg ttgaacgagt gctacttgct gaagaaatta aacataaaaa
     3601 tccgcaagtg ttagcagctc ttttggagcg tttaacccaa ttagaacaaa ctcaacagaa
     3661 taaaattcaa attgattatg tgaaccacga aatctttaaa gagcagacac attacagtaa
     3721 agctgttgtg cgttcgggtg agtgttcacc gtatgccaat attattttat attcgggcgt
     3781 gccgttttag ggtggaatga tggaaacctt attaaaaatg agcgggatag ataaagaatt
     3841 tcccggcgtg aaagccttga gcaatgcgtg cttatctgtt tacggtgggc gagtaatggc
     3901 attaatgggc gaaaatgggg caggtaaatc caccttgatg aaagtattga cggggattta
     3961 tagcaaagat gccggctcta ttagctattt aggcaaagaa gttaccttta aaggcccgaa
     4021 agattcacaa gaagccggta ttagcattat tcaccaagag ctgaatttag tcggtaattt
     4081 aaccattgct gaaaatattt ttttgggccg tgagtccaaa accgcttggg gagctattga
     4141 ttggaaaaaa atgtatgccg aggcggataa actgcttgcc cgacttgggg taaaacacag
     4201 tagccatcag ctttgtgcgg agttatccat tggcgagcag caaatggtgg aaattgcgaa
     4261 agccctgagt tttgagtctc aagtaattat tatggacgaa ccgaccgatg ctttaaccga
     4321 tacagaaaca gcatcgttgt ttaaagttat tcgagagtta aaagcggaaa atcgaggcat
     4381 tgtttatatt tcccatcgtt taaaagagat ttttgaaatt tgtgatgatg tgacggtgct
     4441 aagagacggg caatttatcg gcgagcgagt aattgccgat attgatgaag atcagttaat
     4501 tgaaatgatg gttggtcgcc gtttggaaga gcaatatccg catttacacc aagagcgtgg
     4561 cgagttatta cttgaagtga agaatttaag tggaagtggg gtgaataatg tgtcattcca
     4621 attacacaaa ggtgaaattg tgggtatttc cggcttaatg ggggcagggc gtacagaatt
     4681 aatgaaggtg ctttatggtg cattgccgaa aacagccggc tcgatagagt taaatggaaa
     4741 agcgatttcc aaccattgtc cgcaagatgg gttgaataac ggcattgtgt atatttcaga
     4801 agatcgtaaa ggcgatggtc tgattttggg aatgtcggta aaagaaaata tgtctttgac
     4861 ctctctcgat catttctcca aagccggcag tattcgccac gatgcagaaa aattggcggt
     4921 cgatgatttt attgagatgt ttaacattaa aaccccaagt cgggagcaac aaatcgggct
     4981 gctttccggt ggtaatcagc aaaaagtggc gatcgctaaa gggttgatga cccgcccgaa
     5041 tgtgctgatt ttagacgagc cgacacgggg tgttgatgtg ggggcgaaaa aagagatcta
     5101 tcaattaatt aatgaattta aaaaagatgg gcttagtatt ttgatggttt cgtccgatat
     5161 gccggaagtg ttgggaatga gcgaccgcat tttagtgatg cacgaagggc aaatcagtgc
     5221 agaattttca cgagcagaag cgacacaaga aaagctactg gcagcagcta ttggcaaaag
     5281 tacaggatta aattaaggtg tgtttatggc aactcaaaca aagcagtttc aacttggcag
     5341 atttttaatc gagcaacgtt cttttgtagc gttatttatt ttaattgtca gtgtttcaat
     5401 gattaaccct gattttttca gcgtggataa tattttaaat attctacgcc aaacctcggt
     5461 gaatgcgatt attgcggtcg gaatgacctt tgtgatttta attgcaggca ttgatttatc
     5521 ggtcggttcg gttttagcct taaccggtgc ggttgcagcg accttagtcg gttctgaatt
     5581 gccgattttg ttggtgattc cgctggtttt attattaggg acggcatttg gtggtattag
     5641 tggggcgatt gttgctaaag gtaaagtgca ggcatttatt gcgactttgg tcacaatgac
     5701 cttattgcgt gggattacga tggtttatac cgatggcaga ccgattagca ccggcttttc
     5761 tgaccaagca gacgcctttg cgtttattgg gacaggctat ttatttggta ttcctgtgcc
     5821 gatttggatt atggcggtag tgtttgggtt agcttggtat attttgaaac acaccccgat
     5881 tgggcgttac atttacgctt taggtggcaa cgaatcggca acccagcttt caggcatcaa
     5941 tgtgaataaa attaagatct tcgtatttgc cgtgagtggt tttttatctg ctcttgccgg
     6001 cttaattgtg acttcacgtc tctcttctgc tcagccaacg gcaggtgtgt cctatgagtt
     6061 agacgcaatt gcagcggtag ttgttggtgg aaccagtcta atgggcggta aagggcgtgt
     6121 aatgggaacg cttgtcgggg cattaattat cggtttctta aacaatgccc ttaatttatt
     6181 ggatatttct tcatattatc agatgattgc taaagcgttg gttattttag cagctgtatt
     6241 agctgataat tatctaggca ctaaaaaagt ttaatctatc tttaaaggag atttctatga
     6301 aaaaattaac tacgattgca tcagcggtta tgttaagttt atcggttgca gccactgctt
     6361 cggcaaaaga gactatcgct cttgcagtat cgactttaga taacccattc tttgtgagcc
     6421 ttaaagacgg tgcacagaaa aaagcagatg aattaggcta caaattagtg gtgcttgatt
     6481 cccaaaatga cccggctaaa gagctttcca atgtggaaga cttaacggtg cgtggggcaa
     6541 aagtgttatt gattaaccca accgattcgg aagcggtcgg aaatgcggtg gctattgcaa
     6601 atcgcaacaa aattccggtt attacacttg accgtggtgc agcaaaaggc gaagtggtta
     6661 gccatatcgc ttccgataac gttgccggcg gcaaaatggc gggagatttc attgctcaga
     6721 aattaggctc aggggcgaaa gtgattcaat tagaaggcat tgccggcact tccgccgctc
     6781 gtgaacgtgg tgaaggcttt aaacaagcga ttgaagcaca taaattcaat gtattagcca
     6841 gtcaaccggc tgattttgac cgcactaaag gcttaaatgt gactgaaaac ttgctctcaa
     6901 gcaaagggga cgtacaagct atttttgctc aaaatgatga aatggcacta ggagctttgc
     6961 gtgcagtgag ttcagcgaag aaagaggttg taattgtggg ctttgacggc acagatgatg
     7021 gcgtaaaagc cgttgaaagc ggtaaacttg ccgcaacgat tgctcaacaa cctgaactga
     7081 ttggctcatt aggcgtagaa actgccgata aagtgctaaa aggcgaaaaa gtggaagcaa
     7141 aaattccggt tgatttaaag gttatttcaa aataattata cttgaagata gcgttcgtct
     7201 ctgacgaacg ctttgaatta ataaaatagc actcgtcaga gactagtgct atcagaatcc
     7261 tagttttgtt gtactaggta atttgagggc ttaatatgaa aaaactcacc gttctcggta
     7321 gcattaacgc tgatcacgtg atttccgttc cctattttgc caaaccgggg gaaacgctca
     7381 ccggacatag ctgccacatt gcttatggcg gtaaaggggc aaatcaggcg gtggcggcag
     7441 cacgtttggg agctaaggtt tctttcatcg gttgtattgg cagtgatgac atcggcaaag
     7501 caatgaaatc agcctttgag caagatggca ttgacactcg ctcgattaaa acgattccga
     7561 atgaaatgac cggcattgca atgattcaag tggcggaatc gggcgagaac agtattgtga
     7621 tttcagccgg agcgaacggt catttggatg aaacggttgt ggcaaagtgt gcagccgaaa
     7681 tcacacaggc ggattatttg ctaatgcagc tagaaacacc gttgccggcg attgtgcaag
     7741 cagcaaaatt ggctcagcaa aacggcacga aagtaatatt aaaccctgcg cctgctcgag
     7801 cgttacccga tgaactgtta aacttactgg atatgattac cccaaatgaa acggaagcgg
     7861 aaatattaac cggtgtgaaa gttgttgatg aagccagtgc gattcaagcc gcacaagtgt
     7921 ttcaccaaaa gggcatcgaa aaagtgttga ttacacttgg ctcaaaaggg gtatttgtaa
     7981 gcgaaaacgg tgtaggcaaa atcgttgcag gcttccgtgt tcaagcggtg gataccactg
     8041 ccgcagggga tacttttaac ggagcattag tgactgcaat gttagaagat aaaccgctgg
     8101 atcaagccat tcgttttgct cacgcagcgg cagcgattag tgtgactcgc aaaggggctc
     8161 aaccttctat tccgacccgt caggaaacac tggattttct aagccaacaa gcggtgagtt
     8221 tttaggaaaa ttttgcaaat ggcaacaatg aaggatattg cacggcttgc acaggtttcc
     8281 acctcgaccg tttctcacgt tatcaacaat agccgatttg tcagcgagga aattcgggaa
     8341 agagtgcaga gggtggtgaa agaactgaat tacacgcctt ctgcattggc tcgtagcctc
     8401 aaagtgaatg aaactaaaac catcggaatg ctggtaacgg caaccggcaa tccgtttttt
     8461 gcggaggtga tggcgggggt ggagcaatat tgccagcaac atcaatataa cctgattatt
     8521 gccactacca acggtgacac cgagcgtttg caacaccatt tgcaaatgct gatgcaacga
     8581 aaagtagatg gcttgttact gatgtgtggc gataccagat tgaatgccga tgagagcttg
     8641 aatattccgc tgccattggt ggtgttagac tggtggttta ccgagctcaa tgcagataaa
     8701 atctttgaaa attcaatatc cggcggctat ctcgcaacaa aaaccttaat tgaagcaggg
     8761 cattctaaga ttgcgattat tactggaaac ctaaaaaaat cattggcaaa aaatcgttta
     8821 gaaggctaca aaaaagcact tgccgaggcg aatattccac tcaatccaaa ctgggtgttc
     8881 gaaagccatt ttgattttgc cggcggggtt aatggaatga atgctttgct tgcccaaagc
     8941 gaaaagccga cagcggtatt tgcctgtagc gacaccattg ctctaggggc ttaccaagca
     9001 atctggcaac aaggtttacg aataccgcaa gatatttcga ttatcggcta tgacgatatt
     9061 gaactggcaa aatacctttc cccaccgctg agtaccatta gccagcccaa agcggaactc
     9121 gggcggcttg cggtggaaac tttgctaaaa cgaattcgtt ttaaatccac tgattttcaa
     9181 accataatgc ttgaacctga attagtttta aggcattcaa tccaaacaat aaacaaaaac
     9241 gctgaataat gtgaagttat tcagcgtttt ttatccgatt tcaattagcc tttttgctgt
     9301 tccaaataaa gcacggtggc ggcaactcgg gaatgcacgt ttaatttacg cagtaaattg
     9361 cggatatgca cttttacggt ttcttcggaa ataaagagct gagccgcaat ttgtttgttc
     9421 gacataccgg ttgcgagcca ttgtaaaaca tccagttcac gatctgttaa gcaacttaaa
     9481 ggatcatttt ctggctggcg gttgagtaaa tgttggcgaa cggtttcgct taataccact
     9541 tcaccggcag ccgctttacg gatattatct agtagttccg gggtgtcggt atcttttaat
     9601 aaatagccgt ccacaccagc atccattaat gcaaatacat cggattgctc gtctgacact
     9661 gttaaaacaa tgattctggc atctatacct tgagcgcgca atgagcgtaa agtatctagc
     9721 cctgaaagcc ctttcatatt taaatccaga ataatcacat ccggctcaag tcgtaatgca
     9781 agtttgatac cgtcggtgcc gttgcttgct tcacccacta cactaaattg gtgatctaat
     9841 tccaatagtt gacgcattcc ctgacgcatt aatgggtggt cgtcaatgag taaaatttga
     9901 gttggagctg tcatttattt ctcctttcct ttctcttaat cggttaattt tgcaattatt
     9961 aattcaaaat agcaagttta gggatttact aaatgccgct tttttgatct tagctaattt
    10021 ttaactaaaa aagaaattgc aaaactttgc aagaaaaaga ccgcttgttc ggctataatt
    10081 actgccaatt tttatttcaa gtgtgaaaag aatgacaaat caaacaacct attttgccac
    10141 ggcagcccgt ggttttgagg aaatactaaa aaccgaactg gagcagattt gtgcggcaga
    10201 atgcaaagtc gctcaaggcg gtgtgcattt taccaccacg caaaaagggg cttatcaggc
    10261 attattacac agccgtttag cctctcggat cttactgccg ctcatcagca ccaaaatttt
    10321 tagtgatagc gatttatatg cttccatcgt gtcatttaac tgggcggatt tattcgatcc
    10381 ccgtgatacc ttttacattg atttcagcgg cactaaccga gaaatccgca acacccaatt
    10441 tggggcaatg cgagtgaaag acggcattgt ggattacttt gaacgcaaag gttttgcccg
    10501 cccaacagta gataaagata atccggatgt tcgcattcat gtttatttgg atcgtgaaaa
    10561 tgttgtggtt tcgcttgatt taagtggaga tgccttacat attcggggct atcgggaaga
    10621 aaccggtaaa gctccgttgc gtgaaacatt ggcggcagcc attattttgc gttccggctg
    10681 gaaagtcggc acgccattgg ttgatccgat gtgtggttca ggcacgttac tgattgaagc
    10741 agcacaaatg gcagcgaata ttgcccctca acttcaccgt aaacattggg gctttaatgc
    10801 gtggaaaggg catcaacaag cgatgtggaa agccgtgtta gatgaggcat tccgaaatgt
    10861 tgaattgggt gcggtagggg agaattgcaa ttcgtcccta caaaaaatgt tcttcggttt
    10921 tgatctcgat catcgtgtgc tgactaaagc aaagcaaaat gcgaaaaatg caggggtaga
    10981 tcatctcatt caatggcaac aaggtgatgt ggctgcgtta aaaaatccga ttccggaaaa
    11041 aatcggcacg gtggtgtgta acccccctta tggtgaacgt ttaggcacaa cgccggcgtt
    11101 aattgctctt tattcggtgt tcgggcaacg cctaaaacag caatttgccg gttggaatgc
    11161 ctcaattttt agcggcgagc ctgaattgtt aaattgcctg cgtttacgtt cagcccgtca
    11221 attcaaagcg aaaaacggtc cgttggattg tgtgcagaaa aattactcca tcagcgagca
    11281 taacaagcgg tcagatttag atgaaaattt acaatttgaa cagaatgctc aagtcgctcc
    11341 ggattttgca aatcgcttaa ccaaaaatat caaaaagatc gaaaaatggg cgaaacaaca
    11401 aggcattgat gcctaccgtt tatacgatgc cgatctgcct gaatataatt tagcggtgga
    11461 cagatatggc gaccacattg ttgtgcagga ataccaagcc ccgaaaaata ttgatgagca
    11521 aaaagcccgc caacgcttgt tagatgcagt ctctgctacg ctttatgtga caggtgttga
    11581 aactaataaa ttagtgttga aagttcgcca aaaacaaaaa ggcacgaatc agtacgaaaa
    11641 acttgccaat aaaggcgagt atttctatgt gaacgagtat ggggcgaaac tgtgggtgaa
    11701 tttaaccgat tacttggata cgggtttgtt cctagaccat cgcttaaccc gtaaaatggt
    11761 gggcgaaatg gcaaaaggca aaacattcct gaatctgttt gcctacacgg gttcagctac
    11821 ggttcacgct gctcttaatg gggcaaaatc gaccactaca gtggatatgt cgaacaccta
    11881 tttgaactgg gcggagcaaa atttagagct gaataattta tcacttcgcc atcatcgttt
    11941 gttccaagcc gattgcttgc aatggctggc agaatgccgt gagcgatttg agctgatttt
    12001 tgtcgatccg ccgactttct ccaactcaaa acgaatggaa aacagttggg acgtgcaacg
    12061 agaccatatt gagttaatga aacagcttaa acgtatttta accgctgatg gtaccattgt
    12121 gttctcgaac aataagcgtg gctttaaaat ggattttgac ggtttggcag cattaggctt
    12181 aacggcggaa aatatttcgc ataaaacctt accgttggat tttgaacgca atccgcaaat
    12241 ccataattgt tggattgtga agaatgtata gataataccc tcgacccttg tgggagaggg
    12301 atagattttt cttcgttcag aagaaaaatc agggagaggg taagaagtta ctgatgaaag
    12361 agttatttcc ccctctctct gaaaaatatt tctgaacgaa atatttttcg gtctctctcc
    12421 cacaagggga gagagtaagg ctaaaaaatg ttagatattg ttttatacga acctgaaatt
    12481 ccgcaaaaca gcggaaatat tatccgcctt tgtgccaact gtggctttcg tttgcatatg
    12541 attgaaccgt tcggctttgg ttgggacgat aaaaagctcc gccgttcggg gctggattat
    12601 cacgaatttg tggatattca aaaatataaa aattttgaag atttccttga gcgtgctaag
    12661 cctaaacgct tgttcgcctt aaccaccaga ggggagcaga accacagtga tgtgaaatat
    12721 gaacttggcg attttttaat gttcgggccg gaaagcagag gcattccaaa gccattatta
    12781 gcggaaatgc cgatgtcgca aaaaatccgc attccgatgt gcaaagacag ccgcagtatg
    12841 aatttatcta actcggtggc ggtggttgtg tatgaggcgt ggcgacaatt cggctaccaa
    12901 aatgcggtag cggcacaatc tatttaactt gcaagcggtg tgattttggc tattttttgc
    12961 aagtttgtgg tcaaggttgg gggaggctcg accttgacta attaagaaca tctattgtgt
    13021 ctattcttct tcatttttag ctggaggtaa aaaattctct ccggtaacaa ctgatttacc
    13081 tgttttattc tccaattcct gacgggcatt tttggcaata ttgccacctt gttttcctgc
    13141 ttgggcattt tcatcaaccc caactgcctg catactttct gcaatttgcc gactggaaag
    13201 ttcagcaagt gctgtaaata acaattcagc ttcgctcata tgatctcgca gattttggct
    13261 ttttaaacct ttaagcgatt tatgcttttg tacagatagt ccgctccatt cttgatgaat
    13321 cacattggtt aaaaatgcaa aatcttgtgg ctgttcaacc cctgacgatt tccaataatc
    13381 ggtcagttta tttcgggttt cttgtcccat cattctttgc tgaatccatt tttcacttcg
    13441 tcccatcttc tgccaattct cccttgctcg atctagactt tgacttggat cgtttatttc
    13501 ctgtaagcgt tcataaccta cttttgctaa ccattgtttg aagggctctg ctttcggact
    13561 agggatagat tgaataagtc ggaaaagttg ttcggtatct gctacatcag tcaaacgcat
    13621 ttttccgtca gcagagggca ttttcaaccc gtgacaattt gtcacggttt cattgccttc
    13681 tgcctttagc ctctgtttta gcttacgcca ataagcagag ggatctaggc tttcggttaa
    13741 aatagcaatc acatcaataa tagaaaaata ccatttatct ttttcttcat cgtaatgact
    13801 gcgtacagat ttctgt
//
LOCUS       DANLZD010000071        13674 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.071, whole genome shotgun sequence.
ACCESSION   DANLZD010000071 DANLZD010000000
VERSION     DANLZD010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13674)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13674)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13674
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.071"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            19..492
                     /gene="nrdG"
                     /locus_tag="PXE26_001498"
     CDS             19..492
                     /gene="nrdG"
                     /locus_tag="PXE26_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="HDL5594070.1"
                     /translation="MENLRFSSEQIVWQEVPNETSLAFLITGCPLGCKGCHSADSWKA
                     CLGKELSSEYLSERLKRYQGLISCVLFMGGEWEAEKLLPLLQLAKKQGLNTCLYSGLE
                     QHEIAETLLHELTYLKTGRWIAERGGLESLTTNQRFTDLRNNQNLNHLFIRGASI"
     gene            489..2270
                     /gene="nrdD"
                     /locus_tag="PXE26_001499"
     CDS             489..2270
                     /gene="nrdD"
                     /locus_tag="PXE26_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HDL5594071.1"
                     /translation="MIRLQPTQLDGKLHFINQYIQAKNAADGSKMDANANVTQKNIAT
                     MEQELMKDFFVQINRAKVSEKIAKIFGKETACEYLRQIEAHEIYVHDETSLKPYCVSV
                     TMYPFLRDGLTKLGGESKAPKHLASFCGSFINFVFAVSSQFAGAVATVEFLTYFDYFA
                     RKDYGDNYLQTHRSDIENHLQQVVYSINQPAAARGYQSVFWNISVYDKFYFEAMFSRF
                     VFPDFEKPNWETTSKLQLFFMQWFNKERSKAILTFPVVTAAMLTEKGKCKDDEFANQM
                     AKELSQGNSFFIYQSDNPDSLASCCRLRNEISDHSFSYSLGAGGVATGSINVITINMN
                     RLVQDNRDLSEEVSKIHKYQYAYRKLMEEYLAAGMLPVYDAGFISLHKQFLTIGINGM
                     AEAAESQGLTVGYNPDYIDFVQSRLKIIFQANQAAGEKYGVKFNTEFVPAENLGVKNA
                     KWDKEDGYFVPRDCYNSYFYVVEDEEINALDKFLLHGRELIEWLDGGSALHLNLDEAL
                     TQTGYRSLLDTAAKTGCNYFCINVKITICNECSHIDKRTLHSCSKCGSDNIDYGTRVI
                     GYLKRVSAFSSARQKEHSLRFYHREAA"
     regulatory      2327..2423
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            2480..3298
                     /gene="thiM"
                     /locus_tag="PXE26_001500"
     CDS             2480..3298
                     /gene="thiM"
                     /locus_tag="PXE26_001500"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HDL5594072.1"
                     /translation="MTTSLPYHSHYLQKIRQNRPLVHNITNIVAANFSANGLLALGAS
                     PIMAAAIEEMESVPALSNAVVINIGTLIGKEVEAMELAGKTANRLGIPLILDPVGVGA
                     TPFRRQTVETLVDQIHFTAIRGNAGELATLAGVEWQAKGVDAGEGSHNVVEIAQQIAK
                     RYQTLVAISGETDVVSSGSHTALLHNGSPMFPKITASGCLLSAVCGAFLAVADKEHYF
                     NALIEACAAYAVAGEVAAQALKPTQYGQFAVNLLDTLGALTPETVEQYVRVEYV"
     gene            3291..4604
                     /locus_tag="PXE26_001501"
     CDS             3291..4604
                     /locus_tag="PXE26_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5594073.1"
                     /translation="MSKTHSNPTKVAVASMVGTAIEYFDNYIYTMAAVLVFNVQFFNS
                     DDPVSNQLMSLSVLALAFFTRPMGSILFGHFGDKYGRKQTLIASLLLMGLSTVAIGLL
                     PNYAAIGIWATVLLCLCRIGQGLGLGGEWGGAALVATEHAPKHKRAFFGIFPQMGAPI
                     GLLLANGAFYLVNLIYGEQTFLDWAWRIPFVASIVMIAIGLYIRIKISESPIFLKAEQ
                     QGKNRHTPLKTLFSQHLKPFMIGVLIATAGYVLFYILVAFTPIFVKSPVAVSQAGHAT
                     GLGLPVNLYTQYLLITSVIFGIAIFFSGIYSDKIGRRLLLLLATGATVVYGLTMPFFL
                     ENGTPTSIFIFLTIGMILIGLSFGPMAVILPELFPTEVRYTGASLAYTAAGILGASVF
                     TIIAVKINENFGLFGVGGYLSVASLLSFWALWQVHETKDLELEEI"
     regulatory      4740..4836
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            4904..6433
                     /gene="thiE"
                     /locus_tag="PXE26_001502"
     CDS             4904..6433
                     /gene="thiE"
                     /locus_tag="PXE26_001502"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDL5594074.1"
                     /translation="MSNYSNSPYQPNVIWTVAGSDSCAGAGLQTDLHTFHDFNLVGCS
                     VVTSVTAQHPHGVLCVTPVDDHTFRQQFEALLVQGYPNAIKIGLLCSQAQVEILCEYI
                     QKIRAESSHYCYVVYDPVAVASSGQALSDSILLQIVQQKLYPLVDLITPNGTELALLS
                     DTEIQTFGDVKTASHKLFAQGIKAVLAKGGHFEWLGETVRDYLLTANEIYAFSHARQQ
                     SVNTHGTGCTYASAVGAMLATGFDLADAVTVATAYLQKGLSEKQGRGQTALSSLCHTG
                     YPDDIAFFPQTELISAPLKLPKEPFAPTEYQLGLYPVVDSVKWLERLILVGVKTLQIR
                     IKNRPLAEIEQEIAHSVALAKQHNVRLFVNDYWQLAMKYQAYGVHLGQEDLATADLNA
                     IQQSGLRLGVSTHCYFEIMRALAVKPSYIAFGHVFPTQTKVMPSQPQGLTNLAKYVAL
                     VAPLNIPTVAIGGINEQSIENVMHTGVGSAAVVSAVTQAKDWQQAVKNLAKFANGGRN
                     E"
     gene            6426..7598
                     /gene="cytX"
                     /locus_tag="PXE26_001503"
     CDS             6426..7598
                     /gene="cytX"
                     /locus_tag="PXE26_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydroxymethylpyrimidine transporter
                     CytX"
                     /protein_id="HDL5594075.1"
                     /translation="MNRTLSTLNSGLIWAGAGISASAIVVGTWIAPLGWQQGLLAIVL
                     GHLLGGILFFAAGLIGAKTGKNAMQTVQISFGRGSVFFSLANVLQLVGWTAIMIYTGA
                     EISNALSLALWEYSAFSLWAIVLGLLIVLWLFTGSNQVGKFKLVTLIAMFLLTLWLSI
                     KVLNGQENFPVSGEMPFSTAVELATIMPLSWLPLVSDYTAKAKKPFAATLSATIGYLI
                     TSAWMYALGLGMVLFTGQTEIAPMLLMTGMSLIGIMVMILSTVTTTFLDAYSAGVSAG
                     NITAKFKETPTAILVTIIGTLLAISLPVTQYENFLLLIGSVFAPMIAVQIADFFVLKR
                     HQAQPNVDWVAAGLWLVGFVLYHLLSYHQVHLLLGLTIPVMLVIFLSTIFVRRFTK"
     gene            7637..7846
                     /locus_tag="PXE26_001504"
     CDS             7637..7846
                     /locus_tag="PXE26_001504"
                     /inference="COORDINATES: protein motif:HMM:NF015737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5594076.1"
                     /translation="MESLVLNNDWVVTPQAQLAYHTINGKADEERLNLLVARAGVRVA
                     KGFALNNGWNLQPYAEVNGIAEKGQ"
     gene            7854..8030
                     /locus_tag="PXE26_001505"
     CDS             7854..8030
                     /locus_tag="PXE26_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5594077.1"
                     /translation="MQVNQYQFGVAENKGRVQGSLGLSAGNGNHRLGLEASVASGKKL
                     KQPFNVLVNYRYQW"
     gene            complement(8071..9927)
                     /gene="sppA"
                     /locus_tag="PXE26_001506"
     CDS             complement(8071..9927)
                     /gene="sppA"
                     /locus_tag="PXE26_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HDL5594078.1"
                     /translation="MLTILKAFYRIFRCIRECVINLFFILFILLLVPVVAFISSSGST
                     QKPVFNQGALRLNLDGYLADNREEFTDFYRLVQSELGSSEPFKISTFDVVQAISHAKN
                     DPKITGLVLDLQKLQSADFSSLDFIGNEINNFKQSGKPVIAVGEDYSQKQYYLASFAD
                     EIYLNKVGAVDLKGLNYSNTYFKTLLDKIEAEPHIFRVGTYKSAVEPFMRDDMSEEAK
                     QNARGWLNGTWQQTVATLAQNRNIEPQALDLSPANYIEKYKQAKGDDAQLALNQKWVS
                     QLVSSQESRDKLIAQFGKNSEGSYNQIEFLDYMTELNDRFAEVNAPKIAVVNVEGAIA
                     GGESDEMNVGSETLVKLLQQARDDKNVEGLILRINSPGGSAVASELIRQEVEAFQQAG
                     KPVVASMGGMAASGGYWIAATSDKIIASPNTLTGSIGIFGLAVTFEKTAKNLGVSEDG
                     IATSALAQQAGLKSLPQEQAEVLQIGIENGYDRFLELVSRGRKMPKEVVDKVAQGQVW
                     LGTDALKHGLVDELGNFNVAYNALSELINQKREAENQPKVEQFGLQWFAEQDDSLFGT
                     LARDFKAQLQFSVANWLDLPLLKQPQQQLETLSRFNDPKQMYLYCLNCGKID"
     gene            10030..10593
                     /locus_tag="PXE26_001507"
     CDS             10030..10593
                     /locus_tag="PXE26_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDL5594079.1"
                     /translation="MQILDLLHHRRSNKKFGDKAPNAEQLEQILKAGLRVPDHGRLKP
                     YRFVVIEKSGMPQFGECLKSAVAEFDMGEERLKKAEKLANQAPMIIGVVATLDDSIAK
                     VPSWEQMITAGCATYAIQLAANAQGFDTVWITNKWINGSALRSAFGCQESDKIIALIM
                     LGSPAEGEQIALAPESESLEGFVRYLK"
     gene            complement(10664..12988)
                     /locus_tag="PXE26_001508"
     CDS             complement(10664..12988)
                     /locus_tag="PXE26_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HDL5594080.1"
                     /translation="MTDLNLKISQIIAGELNVGSHQILAAITLLGEGNTIPFIARYRK
                     EVTGGLDDTQLRHFETRLIYLREMDERRQTILKSIEEQGKLTDELKAKILSSESKTEL
                     EDLYLPYKPKRRTRGQIAIEAGLEPLADSLWNDPKQDPETLAANFVDAEKGVADTKAA
                     LDGARYILMERFSEDAELLAKLRQYLTAYATLESKVIDGKEEEGEKFRDYFAHSEPFN
                     SVPSHRALAMFRGRNEGVLSLSLNADPTAEEGTKSSHCEEIIREHLGVIFNNQPADKW
                     REQVIAWTWKIKAALHLETELMATLCEKAEEEAIDVFARNLSALLMAAPAGARNTMGL
                     DPGLRTGVKVAVVDNTGKLLDTATIYPHTGREAEAQLAIFSLIKQHNVELIAIGNGTA
                     SRETERFAKAVIKEIKENKPQTVVVSEAGASVYSASEFAANEFPNLDVSLRGAVSIAR
                     RLQDPLAELVKIEPKAIGVGQYQHDVNQSQLARKLDAVVEDCVNAVGVDLNTASAPLL
                     ARVAGMTKTLAQNIVAFRDENGRFTSRSELKKVPRLGPKAFEQCAGFMRIIGGKNALD
                     ASSVHPEAYPVVEKILQATTSTLAELMGNNSKIHSLNAKDFVDEQFGLPTVNDIFKEL
                     EKPGRDPRGEFKTAVFMDGVEEITDLKAGMILEGTVTNVANFGAFVDIGVHQDGLVHI
                     SMLSNSFVEDPHTVVKAGDVVKVKVLEVDAARKRIALTMRLDDKPTDKKEPTSGRNSA
                     EICKNTQKNDRLQSNNRNAFGNNAFADALKGWKK"
     gene            complement(12988..13542)
                     /gene="pilW"
                     /locus_tag="PXE26_001509"
     CDS             complement(12988..13542)
                     /gene="pilW"
                     /locus_tag="PXE26_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis/stability protein PilW"
                     /protein_id="HDL5594081.1"
                     /translation="MFAKFFPKMTACILIFLLAACSSLPPSSSEVEFNRSEAVKARIN
                     LALAYLEQNDFPKAKQNIDKALAHDEKDYLPYSVLAYYYQQTGDAENAEKAYQTALKL
                     SQNRPDVLNNYGTFLCKQGQFQQAYQQFEQAVKSKAPYYHQADSLENMVLCAKKEPNL
                     QKIAETLTELEKLDKPRANLLKEN"
BASE COUNT         3677 a         3121 c         2974 g         3902 t
ORIGIN      
        1 tgtgttaatg aattagtaat ggaaaatctc agattcagct cggaacaaat tgtttggcaa
       61 gaagtgccga atgagacctc acttgctttt ctgattacag gctgcccgct tggctgtaaa
      121 ggttgccata gtgcggatag ctggaaagcc tgtcttggga aagagcttag cagtgaatat
      181 ctctctgaac gcctaaaacg ctaccaaggc ttaattagct gcgtattgtt tatgggcgga
      241 gaatgggaag cagaaaaatt actgccgctg ttgcaactgg caaaaaaaca ggggctaaac
      301 acctgtcttt atagtggttt ggagcagcac gaaatcgccg agactttatt acacgagcta
      361 acctacttaa aaaccgggcg ttggattgcc gaacgaggag gattggaaag tttaaccacc
      421 aaccaacgct ttactgattt acgcaataac caaaatctta accatctttt tattcgagga
      481 gcttcaatat gattcgctta caaccgacac aattagacgg aaaactacat ttcattaacc
      541 aatatattca agccaaaaat gccgcagacg gttcaaaaat ggacgccaac gctaacgtca
      601 cgcaaaaaaa catagcgaca atggaacagg agctaatgaa agattttttt gtgcaaatca
      661 accgagcaaa agtgagtgaa aaaattgcaa aaatttttgg aaaagaaacc gcttgtgaat
      721 atttacgtca aatcgaagca cacgaaattt acgtacacga tgaaaccagc ctaaaaccct
      781 actgcgtttc agtcactatg taccctttct tgcgtgatgg tttgactaaa ctcggcggcg
      841 aatccaaagc cccgaaacat ttagcctcat tctgcggttc ttttatcaat tttgtctttg
      901 cagtcagttc tcagtttgcc ggtgcagtcg ccacggttga atttctgacc tattttgact
      961 attttgcccg caaagattac ggcgataatt acttacagac tcatcgttca gatattgaaa
     1021 accacctgca gcaggttgtg tatagcatca accaaccggc agccgctcgt ggttatcaaa
     1081 gcgtcttttg gaatatttca gtgtatgaca aattctattt tgaagcgatg tttagccgtt
     1141 ttgtttttcc tgattttgag aaaccaaatt gggaaaccac ttcaaaatta caacttttct
     1201 ttatgcaatg gttcaataaa gagcgaagca aagcgattct cactttccct gttgtgaccg
     1261 cagcaatgct taccgaaaag ggcaaatgta aagatgacga gtttgccaat caaatggcaa
     1321 aagagctatc tcaaggcaat tcattcttta tttatcaatc agataatccg gattcccttg
     1381 cttcttgctg ccgcttgaga aatgaaatca gcgatcatag cttctcctat tcattagggg
     1441 ctggaggtgt tgcgacaggt tcaatcaatg taattactat taatatgaac cgtttggtgc
     1501 aagataaccg tgatttaagc gaagaagtca gcaagatcca taaatatcaa tacgcttacc
     1561 gcaaactgat ggaagagtat ttagctgccg gtatgttgcc ggtttacgat gccggtttta
     1621 tttcactgca taaacaattc ctgactattg gcattaacgg aatggcagaa gctgctgaat
     1681 cacaaggttt aaccgtaggt tacaatccag actatattga ttttgtgcaa tctcggttaa
     1741 aaattatttt ccaagctaac caagcagccg gtgaaaagta tggggtaaaa tttaataccg
     1801 aatttgtgcc tgctgaaaat ttaggggtca aaaacgccaa atgggacaaa gaggacggct
     1861 atttcgtacc acgagattgc tacaattcct atttctatgt ggtagaagat gaagaaatta
     1921 atgctttgga taaattctta ctgcacggca gagagctgat tgaatggctg gacggaggct
     1981 ccgctctaca cttgaattta gacgaagcct taacccaaac cggatatcgc tccttgctgg
     2041 ataccgccgc taaaaccggc tgcaattatt tttgtattaa cgttaaaatc acgatttgca
     2101 acgaatgtag ccacatcgac aaacgcacgt tgcacagttg tagcaaatgt ggctccgata
     2161 atattgatta cggcactcgg gtaatcggct atttaaaacg agtctccgcc tttagttccg
     2221 cccgccaaaa agagcacagc ttgcgtttct atcaccgaga agcagcttaa ttgaaaactg
     2281 cagttgtagc cctttacaac cgctttttta gtgattatat taaagcctca tttagtcggg
     2341 gtgcttgcct aagggcaagc tgagaaatac ccgttgaacc tgatgcagtt agcactgacg
     2401 taggaaacta aaggcgtaaa cccatctatt ccccgttggt gttggtgcgt tgtttttcaa
     2461 tcatattaag gaataaacga tgaccacatc actcccctat cactcgcatt atttgcaaaa
     2521 aattcgacaa aatcgaccgc ttgttcacaa cattaccaac attgttgccg ctaatttttc
     2581 tgccaacggc ttattggctc ttggtgcttc tcccattatg gcagctgcta ttgaggagat
     2641 ggaatccgtg ccggcactca gtaacgccgt ggtgattaat atcggcacgc ttatcggcaa
     2701 agaagtagaa gcaatggagc ttgctggcaa aaccgccaac cgtttaggta ttccgctcat
     2761 tcttgaccct gtcggcgttg gagcaacacc tttccgccgt caaacagttg aaaccttagt
     2821 cgaccaaatt cacttcaccg ccattcgtgg aaatgcgggg gaactagcta ccctcgccgg
     2881 tgtagaatgg caagccaaag gcgttgatgc cggcgaaggc tcgcataatg tggttgaaat
     2941 cgcccaacag attgccaaac gttaccaaac cttagtcgca atcagtggtg aaaccgatgt
     3001 ggtaagctct ggctcacaca cagctttatt gcacaacggc agcccgatgt tccccaaaat
     3061 taccgcttca ggctgtttat taagtgcggt atgcggggca ttcttagccg ttgccgacaa
     3121 agagcactat ttcaacgcac ttattgaggc ttgcgccgct tatgccgttg caggcgaagt
     3181 ggctgctcaa gcactcaaac caactcaata cgggcaattt gccgtcaatc tgctggatac
     3241 ccttggggca ttaacgcctg aaaccgttga gcaatatgtg agggttgaat atgtctaaaa
     3301 ctcactcaaa cccaactaaa gtggcggttg cctcaatggt cggcacggcg attgaatatt
     3361 ttgataacta catctacacg atggcagcag tgctggtgtt taatgtgcag ttttttaata
     3421 gcgatgatcc ggtttccaac caattaatgt cgctttccgt actagctctt gcctttttca
     3481 cccgcccgat ggggtcgatt ttattcgggc atttcggcga taaatacgga cgcaaacaaa
     3541 ctctgattgc ctcgctctta ttaatgggct tatctaccgt agcaatcggg cttttgccta
     3601 attatgccgc cattggcatt tgggcaaccg tgttactctg cctctgtaga atcggacaag
     3661 gtttaggctt aggcggcgaa tggggcggag ctgctctcgt tgccactgaa cacgccccga
     3721 aacacaagcg ggcatttttt ggtatttttc cgcaaatggg cgccccaatc ggcttgctgt
     3781 tggcaaacgg agcgttctac ttggtgaatt taatttacgg tgaacaaacc ttcttggatt
     3841 gggcgtggcg aattccgttt gtcgcttcta ttgtgatgat cgccattggg ctttatatcc
     3901 gaattaagat cagcgaaagc ccgattttcc ttaaagcgga acaacaaggt aaaaaccgcc
     3961 ataccccgct taaaactttg tttagccaac acctcaagcc ttttatgatc ggcgtgctga
     4021 ttgccaccgc cggctatgtg ttgttctaca ttttagttgc tttcaccccg attttcgtca
     4081 aaagcccggt ggcagtttct caagcaggac acgctacagg cttaggttta ccggtaaatc
     4141 tctacaccca atatttgctg attacctccg tgattttcgg cattgcgatt ttcttctccg
     4201 gcatttattc agacaaaatc ggacgccgtt tactgctgtt acttgccaca ggagcaaccg
     4261 tagtttacgg cttaacaatg ccgtttttcc tcgaaaacgg cacaccgact tcgatcttta
     4321 ttttcctcac cattggaatg atcttaatcg gcttaagctt cggcccgatg gcagtaattc
     4381 tacccgaact cttcccaaca gaagtacgtt acacaggggc ttcgcttgcc tacaccgctg
     4441 ccggtatttt aggagctagc gtgttcacta ttattgcggt caaaatcaat gaaaatttcg
     4501 gcttattcgg tgtaggcggc tatttatcgg ttgcctcatt actgagcttc tgggcattgt
     4561 ggcaagtcca cgaaaccaaa gatttggaat tagaggagat ataaaaaacc actcacttaa
     4621 cgacggggca agttaccacc ttgccccaag atgagggaat gcaaatttcc ctctaataga
     4681 cttcacaacg gatattttgc atttttttat aaaaaataac cgcttgtaag ctatactaaa
     4741 aacgcttgtc ggagtgccgt aaggctgaga tcgcaacagc gagatccgtg gaacctgtag
     4801 gttagtacct gcgtagggaa caagttttac ccaaattcag attttgggat cattaccaca
     4861 tctctggcaa gcaaaaccct aagcatatta tgaggatttt gcgatgtcta attattcaaa
     4921 ctctccatac caacctaacg tcatttggac ggttgccggc tcagattcct gtgccggtgc
     4981 cggtctgcaa accgatttac atacctttca cgattttaac ctagtgggtt gttcagtagt
     5041 tacttctgta acggctcaac atccgcacgg tgtgctgtgt gtaacgcctg ttgatgatca
     5101 caccttccgc caacagtttg aagccttgct ggttcaaggc tacccgaacg caatcaaaat
     5161 cggcttactc tgctcgcaag cacaagtaga gatcttgtgt gaatatatcc aaaaaatccg
     5221 tgcagaaagc tcgcattatt gttatgtggt ttacgaccct gtggcagtgg caagcagtgg
     5281 gcaggcgtta tccgacagta ttttattgca gatagtgcaa caaaaattgt atccgctggt
     5341 ggatttaatc actccaaacg gcactgaact cgctttatta agcgacacag aaatccagac
     5401 ctttggtgat gtgaaaaccg ctagccacaa actgtttgca cagggaatca aagccgtgtt
     5461 agccaaaggt ggacattttg aatggctggg ggaaacggta agagattatc tgctgactgc
     5521 aaatgaaatt tatgccttta gtcacgcccg acagcaaagt gtgaataccc atggcacagg
     5581 ttgcacctat gcttcagcgg ttggagcgat gttggcaacc ggctttgatt tagctgatgc
     5641 cgtcactgtt gccaccgctt atttgcaaaa aggcttatcg gaaaaacaag gcagagggca
     5701 aactgcttta agttcacttt gccacaccgg ctaccctgat gatatcgctt tcttcccaca
     5761 aaccgagctg atttctgccc ctcttaaatt gccgaaagag ccttttgctc caacggaata
     5821 tcaacttggg ctttaccctg ttgtagatag cgttaaatgg cttgaacgct taattcttgt
     5881 aggggtaaaa accttgcaaa ttagaatcaa aaatcgaccg cttgcagaga ttgagcaaga
     5941 aattgcccat tcggtcgcac tggcgaaaca gcacaatgtg cgtttgtttg taaatgatta
     6001 ctggcagtta gccatgaagt atcaggctta cggcgtgcat ttagggcagg aggatttagc
     6061 caccgccgat ttaaatgcaa ttcagcaatc tgggttacgg cttggtgttt caacccactg
     6121 ctactttgaa ataatgcggg cattggcggt gaaaccgtct tatatcgctt ttggccacgt
     6181 tttccctact caaaccaaag taatgccgtc tcaaccacaa ggcttaacaa atttagccaa
     6241 atatgttgct ctcgttgcac cgcttaacat tccaactgtg gcgattggtg gaattaatga
     6301 gcaaagcatt gaaaatgtaa tgcataccgg tgtcggcagt gccgcggtgg taagtgccgt
     6361 tacccaagca aaagattggc aacaagcggt caaaaactta gcaaaatttg caaatggagg
     6421 ccgtaatgaa tagaactctt agtacgctaa acagtggttt gatttgggcg ggagcgggca
     6481 ttagtgccag tgcaatcgtg gttggcactt ggattgcccc acttggctgg caacaaggct
     6541 tgctggcgat agtgctaggg catttattag gcggcatttt gttttttgct gccggcttaa
     6601 ttggggcgaa aaccggcaaa aatgcgatgc aaacggtgca aatttccttt ggcagaggct
     6661 cggtgttttt ctcccttgcc aatgtgctac agcttgttgg ttggacagcc attatgatct
     6721 atacaggggc agagatcagt aatgccctta gccttgcctt atgggaatat tcggctttct
     6781 cgctttgggc aatcgtgctt gggttgctga ttgtgctatg gttatttacc ggctctaatc
     6841 aggtcggaaa attcaagtta gtgacattga tagcgatgtt tttgctcacc ttatggctaa
     6901 gcattaaggt attgaatggg caggaaaatt ttcctgtttc gggtgaaatg ccgtttagca
     6961 ccgcagtgga attagcaact attatgcctc tttcgtggct acctttggta tcagactata
     7021 ccgctaaagc gaaaaagcct tttgccgcga ccctttcggc gaccataggc tatttgatca
     7081 ccagtgcgtg gatgtatgcg ttaggtctgg gtatggtgct atttaccggg caaaccgaaa
     7141 ttgcccctat gttactaatg acaggaatga gccttatcgg cattatggtg atgattcttt
     7201 cgactgtgac taccacgttt cttgatgcct attccgccgg tgtcagtgcc ggcaatatca
     7261 cggcaaaatt caaagaaacc ccaaccgcca ttctagtcac aatcatcggc acgctactgg
     7321 caatcagttt accggttacc caatatgaaa atttcctgct gctgataggc tcggtattcg
     7381 ccccgatgat tgccgtgcaa attgcggatt tctttgtgtt aaaacgccac caagcacagc
     7441 ctaatgttga ttgggttgct gccggattat ggcttgtcgg cttcgtgcta taccaccttc
     7501 tctcttacca ccaagtgcat ttactactcg gcttaaccat tccagtgatg ttagtgattt
     7561 ttctcagcac catttttgtg aggaggttca caaaatagaa agataagcgg ttcaattgga
     7621 gtgaaaattt gctaaaattg agtcgcttgt tttaaacaat gactgggtag taacaccaca
     7681 agctcaactt gcctaccaca ccattaacgg taaagccgat gaggaacggt taaatctttt
     7741 agttgcccgt gccggcgtaa gagtagcaaa aggctttgcc ttgaataatg gttggaatct
     7801 gcaaccttat gcggaagtaa acggcattgc tgaaaaaggc caatagtacg aaagtgcaag
     7861 taaaccaata tcagtttgga gttgccgaaa acaagggcag agtgcaaggt tcacttggct
     7921 tgagtgcagg aaacggtaat caccgtttag gtttagaggc atcagttgct tcaggtaaga
     7981 aactgaaaca accatttaat gtattagtaa attatcgtta tcaatggtaa tttaagaggg
     8041 caggtgaaaa cctgccctta aattcaataa ttaatctatc ttcccacaat ttaaacagta
     8101 aagatacatc tgtttcggat cgttaaaacg tgaaagagtc tctagctgtt gttgcggttg
     8161 cttcaacagc ggtaaatcaa gccaatttgc cacgctaaat tgtaattgag ctttgaaatc
     8221 acgggcaagc gtgccaaata agctgtcatc ttgctccgca aaccattgta agccgaactg
     8281 ttcgacttta ggttggtttt ccgcttcacg tttttggttg atcaattcag ataacgcatt
     8341 atatgccaca ttaaaattgc ccaactcatc aaccaatccg tgttttaacg catcagttcc
     8401 cagccacact tgcccttgag ccactttatc taccacctct tttggcattt tcctgccacg
     8461 agaaaccagc tctaaaaaac ggtcgtagcc gttttcaatc ccaatttgca gcacttctgc
     8521 ctgctcttgc ggtaggcttt ttaaaccggc ttgttgtgct agggcagaag tcgctatgcc
     8581 gtcttcgctc acaccgagat ttttagcggt tttttcaaaa gttactgcta aaccgaaaat
     8641 accgatagag ccggtaagcg tattcgggct agcaataatt ttatcgctgg tagccgcaat
     8701 ccaataaccg cccgatgctg ccattccgcc cattgaagca accaccggtt tgccggcttg
     8761 ttgaaaggct tccacttctt ggcgaatcag ttcagacgcc acagcactgc cgccggggct
     8821 gttaatgcgt agaattaagc cttccacatt tttgtcatct cgagcttgtt gcagtaattt
     8881 taccagcgtc tcgctgccca cattcatttc gtcactttca ccgccagcaa tcgccccttc
     8941 cacattcact accgcaattt tcggagcatt cacttctgca aagcggtcgt ttagttcagt
     9001 catataatct aaaaattcaa tctggttata actgccttcg ctgtttttgc caaactgtgc
     9061 aatcagttta tcccgacttt cttggctgga cactaactga ctaacccatt tttgatttaa
     9121 tgccagttga gcatcatctc ctttagcttg tttatatttt tcaatgtaat tggcaggcga
     9181 taaatccagt gcttgcggtt caatgttgcg gttttgagct agtgttgcca cagtttgttg
     9241 ccaagtgccg tttaaccagc ctcgggcatt ttgtttcgcc tcctcagaca tatcatcacg
     9301 cataaacggc tcaaccgccg atttataagt accgacacgg aaaatatgcg gttcagcctc
     9361 aattttatcg agcaaggttt tgaaataagt gttggaataa tttaagcctt ttaaatccac
     9421 cgcaccgact ttattgagat aaatttcatc agcaaaggaa gcaagataat attgtttttg
     9481 cgagtagtct tcgcccactg caatcaccgg cttgcccgat tgtttgaagt tgttgatttc
     9541 attgccgata aaatccaatg agctgaaatc agcactttgt agcttttgca gatctaacac
     9601 caagccggta attttcgggt catttttagc gtggctaatc gcttgcacca catcaaaagt
     9661 cgagatttta aacggctcgg aactacctaa ttccgattgc accaagcggt agaaatcagt
     9721 gaattcttcc cgattatctg ctaaataacc atctaaattt aaacgtaacg ccccttgatt
     9781 gaacaccggc ttttgcgtgc tgccagaaga gctgataaat gcgaccaccg gcactaatag
     9841 caaaataaac agaataaaaa agagattaat gacacactct ctaatacaac ggaagattcg
     9901 gtaaaatgct tttaaaatcg ttaacatcgg aaattcctaa aaataaactc agtcggcaca
     9961 gtataaagca atcgctaaat gaagaaaata tgctattctt gaacgcaaaa aattaacaaa
    10021 ggaacgctta tgcaaatctt ggatttatta caccatcgcc gttcaaataa aaaatttggc
    10081 gataaagccc cgaatgcaga acaactggaa caaattctaa aagccggctt gcgagtgccg
    10141 gatcacgggc ggttaaagcc ttatcgcttt gtggtgattg aaaaaagcgg tatgccacag
    10201 tttggtgaat gcttaaagtc tgcggtagca gaatttgata tgggcgagga acgcttaaaa
    10261 aaagcggaaa aattagctaa tcaagctcca atgattatcg gcgtggtagc aacattagac
    10321 gacagcatcg ccaaagtgcc aagttgggaa caaatgatta ccgcaggctg tgcaacttat
    10381 gcgattcagt tagcggcaaa tgcacagggc tttgatacgg tttggatcac caataaatgg
    10441 attaacggct ctgctcttcg ctccgctttt ggttgccaag aatctgataa aatcattgcc
    10501 ttaattatgc ttggctcacc ggcagagggc gagcaaattg cattagcccc tgaaagtgaa
    10561 agtttagagg ggtttgtacg ttatcttaag taagcaggtt aacagataaa agttagtaat
    10621 aagggcgaaa aatatttcgc ccttgctttt atctgttttc gccttacttc ttccagcctt
    10681 ttaacgcatc ggcaaaggca ttgttaccaa aagcgttgcg attgttgctt tgcaagcggt
    10741 catttttctg cgtatttttg caaatttctg ctgaatttcg accgcttgtt ggctcttttt
    10801 tatcggttgg tttgtcgtct aaacgcatcg taagggcaat acgtttgcgg gcagcgtcca
    10861 cctcaagcac tttgactttc accacatcac cagctttcac taccgtgtgc ggatcttcaa
    10921 caaaagagtt tgagagcatt gaaatatgca ccaagccatc ttggtgtacg ccaatatcga
    10981 caaaagcccc aaagtttgcc acattggtca ctgtgccctc caaaatcata ccggctttga
    11041 ggtcggtaat ttcttccacg ccgtccataa acacggcggt tttaaactct ccacgagggt
    11101 cacgccccgg tttttctaac tctttgaaaa tatcgttcac cgttggtaaa ccaaactgct
    11161 catccacaaa atctttggcg ttgagcgagt gaattttgct gttgttaccc attaattctg
    11221 caagtgttga ggtagttgcc tgtaagattt tttctaccac cgggtaagct tccgggtgaa
    11281 cgcttgaggc atcaagggca tttttcccac cgataattcg cataaaaccg gcacactgtt
    11341 caaaggcttt cggccctaaa cgaggcactt ttttcagctc tgagcggctg gtaaaacggc
    11401 cgttttcgtc acggaatgcc acgatatttt gtgccaatgt tttggtcatt cccgccaccc
    11461 gagccagcaa cggagcggag gctgtattca gatccacgcc cactgcgttt acacaatctt
    11521 ctactaccgc atcgagttta cgggcaagtt gggattggtt tacatcgtgt tgatactgcc
    11581 caacaccaat cgcttttggt tcgattttca ccaactcggc aagtggatct tgcaaacggc
    11641 gggcaatcga aaccgctccc cgtaatgaaa cgtctaaatt tggaaactcg ttagccgcaa
    11701 attcagaggc agaatagacc gatgccccag cctcactcac caccaccgtt tgcggtttat
    11761 tctctttgat ttctttaatc accgctttgg caaaacgttc ggtttcacga gaggccgtac
    11821 cgttaccaat cgcaatcagt tccacattgt gttgtttgat taagctgaaa atcgcaagct
    11881 gtgcctccgc ctctcgccca gtgtgagggt aaattgtggc ggtatccagc aatttaccgg
    11941 tgttatccac caccgccact ttcacgccgg tacgcaagcc cgggtctagc cccattgtat
    12001 ttctcgcacc ggcaggggct gccattaata atgccgagag attgcgggca aacacatcaa
    12061 tcgcctcttc ttcagctttt tcacacaggg ttgccattaa ttcggtttct aaatgcagag
    12121 ctgctttgat tttccacgtc caagcaatca cttgctcacg ccatttatct gctggttgat
    12181 tattaaaaat cacgcccaaa tgctcacgaa taatttcttc acaatggctg gattttgtgc
    12241 cttcttctgc agtcggatcg gcatttaatg aaagtgataa caccccttca tttcgcccac
    12301 ggaacatcgc caaagcacgg tgggaaggca cgctgttaaa cggctcgcta tgagcaaaat
    12361 aatcacggaa tttctcgccc tcttcctctt tgccgtcaat cactttcgat tccaacgtgg
    12421 cgtaagcggt caaatattgg cgaagttttg caagtagctc agcatcttcg ctaaaacgct
    12481 ccattaaaat atatcttgcc ccgtctaatg cggccttggt atccgcaacg cctttttccg
    12541 catcaacaaa gtttgccgct aaggtttcag gatcttgttt cggatcattc cataaactgt
    12601 ccgccaatgg ctctaaccct gcttcaatcg caatttgccc tctggtgcga cgttttggtt
    12661 tatacggcaa atagagatct tccagctcgg tcttgctttc actgcttaga attttggctt
    12721 ttaattcatc ggttaatttg ccttgttctt caatcgactt caaaatggtt tggcggcgtt
    12781 cgtccatttc acgcaaataa attaagcggg tttcaaaatg gcgaagttgg gtgtcgtcta
    12841 gcccgccggt cacttcttta cggtaacgag caataaatgg aatggtattg ccctcaccta
    12901 atagcgtgat ggctgcaaga atttggtgtg agccaacgtt gagttcgccg gcaataattt
    12961 ggctgatttt tagatttaag tcagtcatta gttttccttc aataaatttg ctcgaggttt
    13021 atccaatttc tcaagctcgg tcaatgtttc ggcaattttt tgcagattcg gctctttttt
    13081 cgcacataac accatatttt ctaagctatc cgcttggtga tagtagggtg ctttgctttt
    13141 gacagcctgc tcaaattgct gataagcctg ttgaaattga ccctgtttac ataaaaaagt
    13201 gccgtaatta ttcagcacat cagggcggtt ttgactcaat ttcagtgccg tttggtaggc
    13261 tttttcggca ttttcagcat cacctgtttg ttggtaataa taggcaagca ccgaataagg
    13321 gaggtaatct ttttcatcgt gagccaaggc tttatcaata ttctgcttag cttttgggaa
    13381 atcattttgc tccagataag ctaaagccaa attaatacgg gcttttaccg cttccgagcg
    13441 gttaaattcg acttcagagg aagaaggggg aagagaagaa caagccgcta ataaaaaaat
    13501 cagaatacaa gcggtcattt ttggaaaaaa ttttgcaaac ataacgttct cctacaacaa
    13561 agggcttaat tttactgttc catcctcgct aagactagcg attttttgcg aagaagaaaa
    13621 atttttcgtt ttcatttttc gacgcagatc gcaaaaataa taatggggtg ttgt
//
LOCUS       DANLZD010000072        13647 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.072, whole genome shotgun sequence.
ACCESSION   DANLZD010000072 DANLZD010000000
VERSION     DANLZD010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13647)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13647)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13647
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.072"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..165
                     /locus_tag="PXE26_001510"
     CDS             <1..165
                     /locus_tag="PXE26_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HDL5594082.1"
                     /translation="LCGLPITKETGWHDHHIVYKMLGGSDALSNRCLVHPTCHIKIHT
                     LNLEVVKPAI"
     gene            354..1130
                     /gene="yaaA"
                     /locus_tag="PXE26_001511"
     CDS             354..1130
                     /gene="yaaA"
                     /locus_tag="PXE26_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HDL5594083.1"
                     /translation="MLAIISPAKTLDFKTNIDGFAFSQPNLTACSQELIDICKQLSPA
                     ELGSLMSISDKLAALNVARFAEWQLEHNEQNAKAALFAFKGDVYTGLEAETLSKAQVE
                     YAQQHLRMLSGLYGLLKPLDLMQPYRLEMGTKLANPKGKDLYAFWGNIITENLQQAID
                     EQGDDILVNLASDEYYGAVKPQNLNATIIKPVFLDEKNGKYKVISFYAKKARGMMVRF
                     ILDTQPTSIEQLKQFNYGGYWFDADSSSESELVFKREEQA"
     gene            1130..1693
                     /locus_tag="PXE26_001512"
     CDS             1130..1693
                     /locus_tag="PXE26_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATPase"
                     /protein_id="HDL5594084.1"
                     /translation="MSAIKKGITLVALSLAGCVSQSPQFAVPDAIHFGQDTFVKVTHS
                     QIDEMQHLLYLPEKSEKNPENWQKGILFFLDKNSKNQTLEQRAAFRQASFAKKPELEA
                     KVEIQQNELHSSVIYPPIERFNNVMLEVTRGRNLACGYGQIQFADKREVGKTVAKKSP
                     NLTAYSQEIARLSLELNQLGWQVQCSK"
     gene            1702..2607
                     /locus_tag="PXE26_001513"
     CDS             1702..2607
                     /locus_tag="PXE26_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HDL5594085.1"
                     /translation="MNEKYSKLVKNAANLAIIVAILLIVIKAFAWWKTGSISILAAMT
                     DSVVDLFASLTNILVLRFALQPADENHAFGHGKAESLAALAQSAFISGSAVFLLLQGF
                     HKLTNPELIAQSSIGVIVSIVSIVITALLVFYQRYVVTLTKSPAIEADSLHYQTDLLM
                     NAAILVAMLLNSAGFVYADAVFAIGIALYIAFNAVKMFWCAVQTLLDQALPDEEIERI
                     KEIASQHPNILGIHDILTRRAGAVRFIQLHLELDDHLTLLVAHEITDSLEQKLLAAFP
                     MSHVIIHQEPTTVVKQEFQDMAENI"
     gene            2607..3359
                     /locus_tag="PXE26_001514"
     CDS             2607..3359
                     /locus_tag="PXE26_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-ribbon-containing protein"
                     /protein_id="HDL5594086.1"
                     /translation="MYQAIVHFSYHNFEQDPVTAISQILNQWLYNGQVIGREMPITFH
                     QNEFQARVCVPTQESLLPQYNSDEVNEALQQAVEIGVIFASFELVGRDYQGEESSHNR
                     SPAFQILYTTHLDTCSPLYDGEQFAPIPLYSLQDQSLSEAILEWQQNWQACDLLQMNG
                     NLLECHALVQISDETSDLAMIGRDLCQQIEQKTHIPTFYYLYRLGRDESEYQRKCPCC
                     GGEWKLTEPLHDIFHFRCEPCRLISNLSWELL"
     gene            3460..4785
                     /locus_tag="PXE26_001515"
     CDS             3460..4785
                     /locus_tag="PXE26_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine transporter"
                     /protein_id="HDL5594087.1"
                     /translation="MLIFNLIVFAAILFLLAKIYKSTQKLGQTVFIGLFLGLASGAFL
                     QTFYEKATVDATLDWINLIGNGYVRLLQMIVMPLVFVSILSAITRLKEAGSLGKISFS
                     VLSVLLVTTAIAAAIGIALVYLFDLSAEGLVAGSRELAAQEKVVGRVEQVSNLSVPSM
                     LLSFIPKNPFLELTGANPTSIINTVIFSALLGIAALSLGKEDKALGERIAQGVETLNK
                     LVMRLVRFVIRLTPYGVFALMIKMAATSQWSDIVNLGSFIVASYIAIGLMFIVHGILL
                     FVAKINPLDYYKKVLPTLSFAFTSRSSAATIPLNIETQTNKLGNNSVIANFSATFGAT
                     IGQNGCAGIYPAMLAVMVAPTVGMDPFSLNYILTLILVVAISSFGIAGVGGGATFAAI
                     VVLSTLNLPIELVGLLISVEPIIDMARTALNVNGAMVAGTLTNKWVKAE"
     gene            complement(4845..5504)
                     /locus_tag="PXE26_001516"
     CDS             complement(4845..5504)
                     /locus_tag="PXE26_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5594088.1"
                     /translation="MFNISKQQVLDAFHFRSACRSYDPNKKINKEDMDYILELGRLSP
                     SSVGSEPWKFLVLQNPETRQKIAPVSWGIKHPMEEMSHLVVILTKKNVRYDSVYMRDM
                     LAKRGLTYEQIEASLVRYKSFQEEDMKLLSERELFDWSTKQTYIALGNMMTGAALIGI
                     DSCPIEGFHYDTVNQILSDEGLFDLNEYGVSCMITFGYRNKEIKKKSRKPTEEVIAWI
                     E"
     gene            5733..6719
                     /gene="pheS"
                     /locus_tag="PXE26_001517"
     CDS             5733..6719
                     /gene="pheS"
                     /locus_tag="PXE26_001517"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HDL5594089.1"
                     /translation="MQHLKDLTNKAREALDKIDQNLEALEEFRVEYFGKKGHFTTLMQ
                     ELRNIAAEERPAIGAKINEAKQVVLDVLNAKKEEWEQAVLNAKLANESIDVSLPGRKT
                     ELGGLHPVSITIERVVKFFSELGFTVANGPEIETDYYNFDALNIPDHHPARADHDTFW
                     FDANRLLRTQTSGVQIRTMENVKPPIRIVAPGRVYRNDYDQTHTPMFHQIELLYVDKE
                     ANFTELKGLIHDFLKAFFEEDLQVRFRPSFFPFTEPSAEVDVMRQNGKWLEVLGCGMV
                     HPNVLRNVGIDPEEYSGFAVGMGVERLTMLRYNVTDLRSFFENDLRFLKQFK"
     gene            6767..9154
                     /gene="pheT"
                     /locus_tag="PXE26_001518"
     CDS             6767..9154
                     /gene="pheT"
                     /locus_tag="PXE26_001518"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HDL5594090.1"
                     /translation="MKFNESWLREWVNPAISTEQLCDQITMLGLEVDDVEPVAGAFSG
                     VVVGEVVECAQHPDADKLRVTKVNVGGERLLDIVCGAPNCRQGLKVACAVEGAVLPGD
                     FKIKKTKLRGQPSEGMLCSYSELGIKEDHSGIIELPADAPIGQDFREYLNLNDVAIEI
                     SLTPNRADCLSIAGIAREVGVINRVDVKAPTITDVKATISDKVSVELQAPEACPRYLA
                     RVVKNVNVKATSPLWLQEKLRRCGIRSIDPIVDITNLSLLELGQPMHAFDAAKIEGGI
                     QVRMAKEGEELVLLDGTNAKLQSNTLVIADSKGALAMAGIFGGEASGVSENTKDVVLE
                     SAFFAPLAITGRARQYGLHTDASHRFERGVDPELTRQAMERATALLLEICGGEAGEIV
                     EAVSQENLPKRNTVTLRRSKLDSVIGHHIDDATVTDILTRLGLNVTFADNSWTAIAPS
                     WRFDIEIEEDLIEEIARIYGYNSIPNNSPLAHLTMKGTPEKLLEANRIRMALVDSDYQ
                     EVITYSFVDPKKQSLLHPQQEALILPNPISSEMSAMRVSLLTGLLDTIVYNQSRQQNR
                     VRIFEAGLRFIPDSNAESGVRQEFVFGAAIVGDKRPVHWENKSEAADFFDLKGDIERI
                     LSLTSIRHDLQFVAKQFPALHPGQSAAIMLDGKEIGFIGTVHPSIVQKFGIKGKPIVC
                     EILASAIAERPVTQAGEISKFPANNRDIAVVVDESVPAGEVLEACRKAGGNKLVAVNL
                     FDVYRGSNLESGKKSLAISLTVQDNEKTLEENEINAVIQAVLAELATRFNAVLRD"
     gene            9212..9508
                     /locus_tag="PXE26_001519"
     CDS             9212..9508
                     /locus_tag="PXE26_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HDL5594091.1"
                     /translation="MALTKIEIAENLIEKFGLEKRVAKQFVELFFEEIRSSLENGEEV
                     KLSGFGNFSLREKKARPGRNPKTGENVAVSARRVVVFKAGQKLRERVEQASSQS"
     gene            9547..10068
                     /locus_tag="PXE26_001520"
     CDS             9547..10068
                     /locus_tag="PXE26_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL5594092.1"
                     /translation="MKLTKRWLSLGCLLAITAMLVACSSSDTTSKSQVKSKVYRSIYQ
                     SDLSDPIMAISRLSEHQHEWKGTRYRLGGNSKAGIDCSGFMQVTFKDLFGIDLPRTTT
                     EQAKAGERISKDELRTGDLVFFKTGRGPNGKHVGVYVKNGQFLHASTKGGVIYSDLDS
                     PYWSKAFWQARRL"
     gene            10084..11127
                     /gene="degS"
                     /locus_tag="PXE26_001521"
     CDS             10084..11127
                     /gene="degS"
                     /locus_tag="PXE26_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane-stress sensor serine
                     endopeptidase DegS"
                     /protein_id="HDL5594093.1"
                     /translation="MLKKIGQAVIFGLFCAILILFVAPIIQSKGSSFSLSAFTQKEIV
                     SYNAAVKIASPAVVNVYSRNFSSENETFEVKNLGSGVIMSSDGYILTNRHVIEDADQI
                     VIALQNGAISTNVKLVGDDSLTDLAVLKIEGENLPTIPQNPERKLQIGDVVLAIGNPL
                     NLGQSITQGIVSAIGRKTLTESGRQNFIQTDVSINQGNSGGALINTAGELIGINTLRF
                     GKNTNELSEGLNFAIPINLANQIMSKIIKDGRVIRGYFGVSTDLLDTAKMQGYEKGVI
                     IVNVDKNGPAAKAGIQAGDLVLKVGDIEAFSPSQMMEELAEMKPYTTVKVLVQRDEQL
                     LNFDVTITELQTQ"
     gene            11136..11810
                     /gene="cmk"
                     /locus_tag="PXE26_001522"
     CDS             11136..11810
                     /gene="cmk"
                     /locus_tag="PXE26_001522"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HDL5594094.1"
                     /translation="MKKIVITVDGPSGAGKGTLCHALAEKLGFDFLDSGALYRITALS
                     AIKKEVPLDDEEKLAEVGRNLDIQFLPENGEIQVILEGENVGDLIRTAEAGQNASKVA
                     AFPLVREALLERQRAFSSEKGLIADGRDMGTVVFPDAQIKLFLDASAEERTKRRVKQL
                     QEKGFNANFDEILAEIKERDFRDRNRSVAPLVPAKDALLLDSTHLSIEDVINQALNHI
                     AQYIKF"
     gene            11902..13569
                     /gene="rpsA"
                     /locus_tag="PXE26_001523"
     CDS             11902..13569
                     /gene="rpsA"
                     /locus_tag="PXE26_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HDL5594095.1"
                     /translation="MSELSFAQLLEESFAATPRLGDVVKGTVVAIQKGLVIVDTGFKS
                     ESAIDASEFTNAQGELEVQVGDEVDVVLKAVEDGFGATVVSRGDAKRNEAWIALEKAF
                     EEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRDSLNLEGKEYEFKVIKLD
                     QKRNNVVVSRRAVIETESNQDRDAVLANLVEGSEVKGTVKNLTDYGAFVDLGGVDGLL
                     HITDMAWKRVKHPSEVVNVGDEVTVKVLKFDKDKTRVSLGLKQLGQDPWAVIAENHPV
                     NSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLE
                     VDEERRRISLGLKQCKANPWEQFAATHSKNDKVSGKIKSITDFGIFIGLEGGIDGLVH
                     LSDISWNVSGEEAVRNYKKGDEVEAVVLQVDAVKERISLGIKQLESDPFTNFVDGTKK
                     GAILTGKVVEVDAKGVKVELEGGVEAFIRANEATAERVEDITSVISVGDSIEAKYTGV
                     DRKSRVVNLSVRAKNEAEESAAIAQVNKEEVVVPNAFAEAFKAAKGE"
BASE COUNT         4103 a         2365 c         3104 g         4075 t
ORIGIN      
        1 ttatgtgggt tgccaataac caaagaaaca ggctggcacg atcatcatat cgtgtacaaa
       61 atgttaggag gaagcgatgc attaagcaat cgttgtttgg tacatccgac ttgtcacata
      121 aagattcata ctttgaactt ggaggtcgtg aagccggcta tatagctgat gaaaggcttg
      181 agctgtatgc agagaaattt gcttgtacag ttcttagggg gcggaggtgc agtaatgtac
      241 tttcgctacc cgacttttct tttcgttttc aagaaggcag ggtttcctgc cttttttgtc
      301 tttatgactg tggtagaata accgccctga ttaactattt gatagaggca tttatgttag
      361 ccattatttc ccctgccaaa acccttgatt ttaaaaccaa tattgacggt tttgcatttt
      421 ctcaaccaaa tttgaccgct tgtagccaag aattaattga tatttgtaaa cagctttcac
      481 ctgctgaatt aggtagtttg atgtcaatta gcgataaatt agccgcttta aatgtggctc
      541 gctttgccga gtggcagctt gagcataacg aacaaaatgc caaagccgcc ctctttgcct
      601 ttaaaggtga tgtttatacc ggactagagg cagaaacgtt aagcaaagca caagttgaat
      661 atgctcaaca acatttgcgt atgctttcag gcttgtatgg tttattaaag ccgttagatt
      721 taatgcagcc ttatcgttta gaaatgggca ctaagttagc caatccgaaa ggcaaagatc
      781 tttatgcttt ctggggcaat attattactg aaaatttgca gcaagcgatt gatgaacaag
      841 gcgatgatat tttagttaat cttgcctctg atgaatatta tggtgcggtt aagccacaaa
      901 atctaaatgc gactattatc aagccggtgt ttttagatga gaaaaacggt aaatataaag
      961 tgatcagctt ctatgccaaa aaagcccgtg gaatgatggt tcgctttata ttagacaccc
     1021 aaccgactag catcgaacag ctcaaacagt ttaactacgg gggctattgg tttgatgcag
     1081 acagttctag tgaaagcgag ctagtcttta aacgtgagga gcaggcataa tgtcggctat
     1141 caaaaaggga ataactttgg ttgcgttatc attggcaggt tgtgtcagcc aaagcccaca
     1201 atttgcagtg cctgatgcta ttcactttgg gcaggatact tttgtaaaag tcacccacag
     1261 ccaaattgat gaaatgcaac atttacttta tttgccagaa aagagtgaga aaaatccgga
     1321 aaattggcaa aaaggcattt tatttttctt agataaaaac agtaaaaatc aaaccttaga
     1381 gcaacgagct gcattccgcc aagcaagttt tgcgaaaaag ccggagcttg aggcgaaagt
     1441 ggaaattcag caaaatgaat tacacagcag tgtgatttat ccacctatag aacgttttaa
     1501 caatgtgatg ttagaagtaa cccgtgggcg gaatttagct tgtggttacg ggcagattca
     1561 atttgcagat aagcgggaag ttggcaagac agttgcaaaa aaatcgccga atttgaccgc
     1621 ttacagccaa gaaattgcta gactttctct tgaattaaac caactgggtt ggcaagtcca
     1681 atgcagtaaa taatgtagta aatgaacgaa aaatacagca aattagtcaa aaatgcagcg
     1741 aatttagcga ttattgttgc gatcttactg attgtgatta aagcctttgc atggtggaaa
     1801 accggttcga tttcaatctt ggcagcaatg acggattcgg tagtggatct gtttgcttcg
     1861 ctaaccaata ttttagtgct gcgttttgca ctacaaccgg cagatgagaa tcacgcgttt
     1921 gggcacggca aagcggagtc tttggcggca cttgcccaaa gtgcgtttat ttccggctcg
     1981 gcggttttcc tactgctaca aggtttccat aaactcacca atccggaatt aattgctcaa
     2041 tcgagtattg gggtaattgt cagtattgta tcaattgtga ttactgcact tttagtcttt
     2101 tatcagcgtt atgttgtcac gcttacgaaa agtccggcga ttgaagcgga ttcgttacat
     2161 taccaaactg atttattaat gaatgcggca attttagtgg caatgttgct taatagtgcc
     2221 ggttttgtgt acgccgatgc agtttttgca ataggtattg ccctctacat tgctttcaat
     2281 gcagtaaaaa tgttttggtg tgcggtgcaa accttgctag accaagcttt gcccgatgaa
     2341 gaaattgagc ggattaaaga gattgcttcg caacatccga acattttagg gattcacgat
     2401 attctaaccc gccgtgcagg tgcagtgcgt tttatccaat tacatttgga attagacgat
     2461 cacttaacgc tgctagtagc tcacgaaata actgatagcc ttgagcagaa attgctggcg
     2521 gcatttccga tgtctcacgt gattattcat caagagccga ctacggtggt caaacaagaa
     2581 tttcaagata tggcggagaa tatttaatgt atcaggcgat agtgcatttc agctatcata
     2641 attttgagca agatccggtg acggcaatta gccaaatctt aaatcaatgg ttatataacg
     2701 ggcaagtcat tggcagagaa atgccgatta cttttcatca aaacgagttt caagctcggg
     2761 tttgtgtgcc tacacaagaa agccttttgc cacaatataa tagtgatgaa gtaaatgaag
     2821 cgttgcaaca agcggtcgaa atcggcgtaa tttttgcaag ttttgagctt gtcgggcgag
     2881 attatcaggg cgaagaaagc agtcataacc gctcgccagc gtttcaaata ttatatacca
     2941 cccatttaga tacctgctcg ccactttatg atggagagca gtttgcccca attccgcttt
     3001 attctttaca ggatcagtct cttagcgaag cgatattgga atggcagcaa aattggcaag
     3061 cgtgcgatct gctacaaatg aacggcaatc tgctggagtg ccacgcactt gttcaaatta
     3121 gtgatgaaac aagcgatctt gcaatgatcg gtcgagatct atgtcagcaa attgagcaga
     3181 aaactcacat tcccaccttt tattacctct accgtttagg gcgtgatgaa agtgaatatc
     3241 aacgcaaatg cccttgttgt ggcggagaat ggaaattaac tgagccgttg cacgatattt
     3301 tccattttag atgtgagcct tgccgtttga tctctaatct aagctgggaa ttattataac
     3361 ttttagttat accaaagtaa taaatcatct tgaatgaatg ccgcaagcgt aatacccttg
     3421 cggcattttt ataataagcg gttttacttt ggaggttctg tgcttatttt caacttaatt
     3481 gtctttgcgg caatattatt tttattggct aaaatttata aatctacgca aaaactcggt
     3541 caaacagtgt ttattgggtt atttttaggg cttgcaagcg gtgctttttt gcaaactttt
     3601 tacgaaaaag ctactgttga tgcaactctt gattggatta acttaattgg taacggttat
     3661 gttcgcttgc tacaaatgat cgtaatgcca ttggtgtttg tctctatttt atcggcaatt
     3721 acccgcttaa aagaggcagg atctttaggc aaaattagtt ttagtgtgct atcagtgtta
     3781 ttagtgacca ccgcgattgc cgcagcgatt ggtattgctt tagtgtatct gtttgattta
     3841 tctgccgagg gtttagtcgc cggctcccgt gagcttgccg ctcaagagaa agtggtaggg
     3901 cgtgtggagc aggtgagcaa cttatctgtg ccttcaatgt tgctttcttt cattccgaaa
     3961 aatccgtttt tagaattaac cggtgcaaac ccaacgtcga tcatcaacac ggttattttc
     4021 tcggctctgc taggcattgc tgcactgagc ttaggcaaag aagataaagc gttgggcgaa
     4081 cgtatcgcac aaggtgtaga gaccttaaat aaactggtta tgcgtttagt acgttttgtg
     4141 attcgcctaa ccccttatgg cgtatttgcg ttgatgatca aaatggcggc aacttctcaa
     4201 tggagcgata ttgtaaattt aggtagcttt attgtggcat catacattgc gattggtttg
     4261 atgtttattg tgcacggtat tttactcttt gtggctaaaa tcaacccgtt ggattactac
     4321 aaaaaagtgt tgccgacatt aagttttgct tttacgtctc gttccagtgc ggcaaccatt
     4381 ccgttgaata ttgagacgca aaccaataaa ttaggtaata acagtgtgat tgccaacttt
     4441 tctgcaacct ttggggcaac catcgggcaa aatggctgtg cgggaattta tccggcaatg
     4501 ttggcggtga tggtcgctcc aacagtggga atggatccgt ttagcttaaa ctatatttta
     4561 accttgattt tggtggtggc aatttcctca tttggcattg ccggtgtagg tggtggtgca
     4621 acttttgcgg cgattgtggt gctatcaacc ttgaatctgc cgattgagtt agtaggcttg
     4681 ctcatttcag ttgagccgat tattgatatg gctcgcaccg ccttaaacgt gaatggtgca
     4741 atggtggcgg gcacattaac caataaatgg gtgaaagccg agtagtcaaa actaaagata
     4801 taaaaatggg cgattaattc gcccgttttt ataagttaag gtgattattc aatccacgca
     4861 atcacttctt cggtaggttt gcgggatttt ttcttaattt ctttgttgcg atagccaaaa
     4921 gttatcatac aagacacacc atattcgttt aggtcaaata agccttcgtc cgataaaatt
     4981 tggtttacgg tatcgtaatg aaaaccttca atcgggcaag agtcaatacc aatcagagcc
     5041 gcaccggtca tcatattgcc taatgcaata taggtttgct tggtactcca atcgaataat
     5101 tcacgttcac taagcaattt catatcctct tcttggaacg acttatagcg taccagcgag
     5161 gcttcaatct gctcataggt taagcctcgt ttggctaaca tatcacgcat atagacagaa
     5221 tcataacgga cattcttttt ggttaaaatc accactaaat ggctcatttc ttccattggg
     5281 tgtttaattc cccacgaaac cggggcgatt ttctgacggg tttccgggtt ttgtagcact
     5341 aaaaatttcc acggttcaga accgacagag cttggtgaga gacgcccgag ttccaaaata
     5401 taatccatat cttctttgtt gatttttttg tttggatcgt aactgcgaca ggccgaacgg
     5461 aagtgaaaag cgtctaaaac ttgctgtttg ctaatattaa acatcgtttt tccttttata
     5521 agtgaaataa gtagattaat gataacttga tttagagcag aatgcgaatt tcacgcctgt
     5581 taatttgcaa aaaattagga aaaaatgacc gcttgtttaa aattgcttta ccttaaaaat
     5641 caatcattta acgaatcggt tgatttactt tttctggcta aagtattatt attcatgaaa
     5701 ttttttattt cattgagttt agaggatagg taatgcaaca cctaaaagat ttaactaata
     5761 aagcacgtga agctttagat aagattgatc aaaatttaga ggctttagaa gagtttagag
     5821 tcgaatattt tggtaaaaaa gggcatttta caacgttaat gcaagaatta cgcaatattg
     5881 cagcggaaga aagaccggca atcggagcaa aaattaatga agcaaagcaa gttgtgcttg
     5941 atgtgttaaa tgccaaaaaa gaagaatggg aacaagctgt attaaatgca aaattagcta
     6001 atgagagcat tgatgtttca ctgccggggc gtaaaactga attaggtggt ttgcaccctg
     6061 tttctatcac tattgagcgt gtggtgaaat ttttctctga attaggtttt accgtagcaa
     6121 acggacctga aattgaaacc gattactata acttcgatgc gttaaacatt ccggatcatc
     6181 atccggctcg agcggatcac gatacgtttt ggtttgatgc caatcgttta ttaagaaccc
     6241 aaacctcggg tgtgcaaatc cgtacaatgg aaaatgtaaa accgcctatc cgtattgtgg
     6301 caccggggcg tgtatatcgt aatgactacg accaaaccca cacaccgatg tttcaccaaa
     6361 tcgaattgtt atatgtggat aaagaagcaa actttaccga gttaaaaggc ttaattcacg
     6421 attttctcaa agcattcttt gaagaagatt tacaagtgcg tttccgcccg tcattcttcc
     6481 cattcactga gccttctgca gaagtagatg taatgcgtca aaacggcaaa tggttagaag
     6541 tgttaggttg cggtatggta cacccgaatg tgttacgcaa tgtagggatt gaccctgaag
     6601 aatatagcgg ttttgctgtg ggaatgggcg tcgagcgttt aacgatgtta cgctacaatg
     6661 tcacggattt acgttcattc tttgaaaatg acttacgttt cttaaaacaa tttaagtaat
     6721 acaagcggtt aaaaatttag aaaattttac aaataggata gaaataatga aattcaatga
     6781 atcttggttg cgtgaatggg taaacccagc aattagcaca gaacagttat gcgaccaaat
     6841 tacaatgtta gggttagaag ttgacgatgt agagccggta gctggtgcgt tttcgggtgt
     6901 agttgtgggt gaagtggtgg aatgcgccca gcacccggat gctgacaaat tgcgtgtcac
     6961 taaagtgaat gttggtggcg aacgtttatt agatattgtt tgtggtgcac caaactgccg
     7021 tcaaggttta aaagtggctt gcgctgttga aggtgcagtg ctaccgggcg atttcaaaat
     7081 taagaaaacc aaattgcgtg gtcagccttc agaggggatg ttatgttctt actcagaact
     7141 tgggattaaa gaagatcata gcggtattat tgaattacct gctgatgcac ctattggtca
     7201 agatttccgt gaatatttaa atttaaatga tgtggcgatt gaaatcagcc ttacgccaaa
     7261 ccgtgccgac tgcttaagca ttgccggcat tgctcgtgaa gtgggggtga ttaaccgtgt
     7321 cgatgtgaaa gctccaacta ttacagatgt aaaagccacg atttcagata aagtttcagt
     7381 ggaattacaa gcaccggagg cttgccctcg ctatttagcc cgtgtggtga aaaatgtgaa
     7441 tgtcaaagcg acatcgccac tttggttaca agaaaaatta cgccgttgtg ggattcgctc
     7501 aatcgatcca atcgttgata ttactaactt gagcctttta gaattagggc agccaatgca
     7561 cgcctttgat gcagcgaaaa ttgaaggtgg cattcaagtg cgtatggcaa aagaaggcga
     7621 agaattggta ttgctagatg gcacaaacgc taaattacaa tcgaatacct tagtgattgc
     7681 tgatagcaaa ggggcattgg ctatggcagg tattttcggt ggcgaagcca gcggggtgag
     7741 cgagaatacg aaagatgtgg tgttagagtc tgcatttttt gctccattag cgattaccgg
     7801 tcgcgctcgt caatatgggt tacataccga cgcatcacac cgttttgagc gtggggttga
     7861 tccagaatta actcgtcaag caatggagcg tgcaacggca ttattactgg aaatttgcgg
     7921 cggtgaagca ggtgaaattg tggaagccgt gagccaagaa aacctaccaa aacgcaatac
     7981 tgtcacgctt agacgcagta aattagattc ggtgattggt catcatattg acgatgcaac
     8041 ggtaaccgat attttaaccc gcttaggctt gaacgtaaca tttgcggata atagttggac
     8101 ggcaattgct ccaagttggc gttttgatat tgaaattgaa gaagatttaa ttgaagaaat
     8161 cgcgcgaatt tatggctaca acagtatccc aaataattcg ccacttgctc atttaacgat
     8221 gaaaggtacg ccggaaaaat tactggaagc aaaccgtatt cgtatggcat tggtagatag
     8281 tgattaccaa gaagtgatta cttatagctt tgttgatccg aaaaaacaat cattattgca
     8341 cccacagcaa gaagccttga ttttaccaaa cccgatttca agtgaaatgt cggcaatgcg
     8401 tgtttctctt ttaaccggtt tgttggacac tatcgtgtat aaccaaagcc gtcagcaaaa
     8461 ccgtgtgcgt atttttgaag caggtctacg ttttattccg gatagcaatg cggaatcagg
     8521 cgtgcgtcaa gaatttgttt ttggtgcggc gattgtaggc gataaacgtc cggtacattg
     8581 ggaaaacaaa tcagaagcag ccgatttctt tgatttaaaa ggcgatattg agcgtattct
     8641 ttctttaacc tctatccgcc acgatctgca atttgtcgca aaacagttcc cagcattaca
     8701 cccggggcaa tcggctgcga ttatgcttga tggcaaagaa attggtttta tcggaactgt
     8761 tcacccgtca attgtgcaaa agtttggcat taaaggcaaa ccgattgtat gtgaaattct
     8821 agcatcagct attgcagagc gtccggttac acaagcgggc gaaatttcta aatttcctgc
     8881 aaataaccgt gatattgcgg tagtggttga tgaatctgtt cctgcaggtg aggtgttaga
     8941 ggcttgtcgt aaagctggtg gtaataaatt agtggcagta aatttatttg acgtttaccg
     9001 tggttcgaat ttagaaagtg gtaagaagag tttagccatt agcttaacgg ttcaagataa
     9061 tgaaaaaaca ttagaagaaa atgaaatcaa tgcggtaatt caagcggtat tagctgaatt
     9121 agcaacacgt ttcaatgcgg tacttcgtga ttaatcagta aaatatggct gatttatttt
     9181 atcagccata acaataaact aaggataaat gatggcgctt accaagattg aaattgcaga
     9241 aaacctgatt gaaaaatttg ggttagaaaa gcgtgtagcg aagcaatttg ttgaattgtt
     9301 ctttgaagag atccgatcct ccctcgaaaa tggtgaagaa gtgaaattat ctggttttgg
     9361 taatttttca ctgagagaaa aaaaagctcg tccaggaaga aatcctaaaa cgggggaaaa
     9421 tgtggctgtt tcagcccgtc gagtagtagt ttttaaagct gggcaaaaat tacgagaacg
     9481 tgttgagcaa gctagctccc aatcataggg gcagttatat tagttagatt taatgtggag
     9541 taataaatga aattaaccaa acggtggctt tccttaggtt gtttgttagc tattacagcg
     9601 atgttagtgg cttgttcaag ttcagataca acctctaagt ctcaagtaaa aagtaaagtt
     9661 tatcgttcaa tataccaatc agacctttct gatcctatta tggcaattag tcgattaagt
     9721 gaacatcaac acgaatggaa aggcactcgc tatcgtttag gtggcaatag caaggctggc
     9781 atcgactgtt ctggttttat gcaagtcact tttaaagatc tttttgggat agatttgccg
     9841 agaaccacca cagagcaggc taaggctggt gagcgtatat ccaaagacga attgcgtaca
     9901 ggtgatttag tttttttcaa gacagggcgt ggtccaaatg ggaaacacgt tggtgtttat
     9961 gtaaaaaatg ggcaatttct tcacgcctca acaaagggag gggtgattta ttctgatttg
    10021 gattcgccat attggtctaa ggctttctgg caggctcgtc gtttataatt tagggtaaca
    10081 tacatgctga aaaaaatcgg acaagcggtc atatttggac ttttttgtgc aattttaatt
    10141 ttgtttgtag ctccaattat tcagagtaaa gggagttcgt tttcattatc agcattcact
    10201 caaaaagaga ttgtaagcta caatgcagcg gttaaaatag cctcccccgc agtcgttaac
    10261 gtatatagcc gaaattttag ttctgaaaat gaaacatttg aagttaagaa tttaggttcg
    10321 ggtgtgatta tgagtagcga tggctatatt ttaactaaca ggcatgtgat tgaagatgcg
    10381 gatcaaatcg tgattgcttt gcaaaacggt gctatttcga ctaatgtaaa attagtcggc
    10441 gatgattctt taactgattt agctgtttta aaaattgagg gtgagaattt acctactatt
    10501 ccacaaaatc cggagcgcaa actacaaatt ggcgatgtgg tgttggcaat tggtaatcct
    10561 ttgaatttag gacagagcat tacgcaaggg atagtcagtg ctattgggcg aaaaacctta
    10621 acagaaagtg gtagacaaaa ttttattcag acagatgttt ccattaatca agggaactca
    10681 ggtggtgctt taattaatac tgctggtgag ctaataggta ttaacacttt gcgttttggg
    10741 aaaaatacga atgaattgtc agagggccta aattttgcga ttcccattaa tctggcgaat
    10801 caaattatga gtaagatcat taaagatggc cgagttattc gtggctattt tggggtaagt
    10861 acagatttgc ttgacaccgc aaaaatgcaa ggttatgaaa aaggggtgat cattgttaat
    10921 gtagataaaa atgggccagc cgcaaaagcg gggattcaag caggtgactt agtgcttaaa
    10981 gtcggagata ttgaggcatt ctctccttct caaatgatgg aagagcttgc tgaaatgaaa
    11041 ccttatacta cagtaaaagt attggttcaa cgtgatgaac aattacttaa ctttgatgta
    11101 actattactg agttacagac tcaatagggt agaaaatgaa aaaaatagtg attacagttg
    11161 atgggccgag tggtgcaggt aaaggaacgt tatgtcatgc attggctgaa aaattagggt
    11221 ttgatttttt agattctgga gccttatacc ggattactgc attaagcgca attaaaaaag
    11281 aggttcccct tgatgatgag gaaaaactag cggaagttgg gcgtaatctt gatattcaat
    11341 ttttgccaga aaatggcgag attcaggtga ttttggaagg agaaaatgta ggcgacttaa
    11401 tccgaacggc agaagcaggt caaaatgcct ctaaagtcgc tgctttccct ttggtacgtg
    11461 aagcactttt agaacgccaa agagccttta gtagcgaaaa aggtctgatt gcagatggac
    11521 gagatatggg gacagttgtg tttcctgatg cacaaattaa gctgttttta gatgcaagtg
    11581 ccgaagaacg cacaaaaaga cgtgtaaaac agttgcaaga aaagggattt aatgctaact
    11641 ttgacgagat tttagccgag ataaaagaac gtgattttcg cgatagaaat cgatcagtcg
    11701 cgccacttgt tccggctaaa gatgcgttgc tgttagattc aacgcattta tcaattgaag
    11761 atgtgattaa ccaagcatta aatcatatcg ctcaatacat taaattttag tttgttgctt
    11821 cacataggat ttgtgtagct tttattatca accccgttta acaggacgtt agatggatgt
    11881 ttatttttaa gaagatttat tatgtcagaa ttatcgtttg ctcaactact tgaagaatca
    11941 tttgcagcta caccacgttt aggtgatgtt gttaaaggta ctgttgttgc tatccaaaaa
    12001 ggcttagtta ttgttgatac aggtttcaaa tctgaatctg caatcgatgc ctcagaattt
    12061 actaacgcac aaggtgaatt agaagttcaa gtgggtgatg aagtagatgt tgttcttaaa
    12121 gctgtagaag acggttttgg tgcaacagta gtttctcgtg gtgatgcaaa acgtaacgaa
    12181 gcttggattg ctttagagaa agcatttgaa gaacaagcta cagttatcgg tttcgtaaat
    12241 ggtaaagtaa aaggcggttt cactgttgaa ttaaacggtg ttcgtgcatt cttacctggt
    12301 tcattagttg atactcgtcc ggttcgtgat tctttaaacc tagaaggtaa agagtacgaa
    12361 ttcaaagtaa tcaaattaga tcaaaaacgt aacaacgtag tagtatctcg tcgtgctgtt
    12421 atcgaaacag aaagcaacca agatcgtgat gcggtattag caaacttagt tgaaggttct
    12481 gaagttaaag gtacagttaa aaacttaact gactacggtg cattcgtaga tttaggtggc
    12541 gttgacggtt tattacatat cacagatatg gcttggaaac gtgttaaaca cccaagtgaa
    12601 gtggttaatg taggcgatga agttactgtt aaagtattaa aatttgacaa agacaaaact
    12661 cgtgtatcat taggcttaaa acaattaggt caagatcctt gggctgtaat tgctgaaaac
    12721 cacccggtaa acagcaaatt aactggtaaa gtaactaact taactgacta cggttgcttc
    12781 gttgagattt tagacggtgt tgaaggttta gttcacgttt cagaaatgga ttggacaaac
    12841 aaaaacattc acccatctaa agtggttaac gtaggcgatg tagttgaagt aatggtactt
    12901 gaagttgatg aagaacgtcg tcgtatctca ttaggtttaa aacaatgcaa agcaaaccct
    12961 tgggaacaat ttgcggcaac tcacagcaaa aatgataaag tatcaggtaa aatcaaatca
    13021 attactgact tcggtatttt catcggttta gaaggtggta ttgacggttt agttcactta
    13081 tctgacattt cttggaatgt ttcaggtgaa gaagcagttc gtaactacaa aaaaggtgat
    13141 gaagtagaag ctgttgttct acaagttgat gcagtgaaag agcgtatctc tttaggtatc
    13201 aaacaattag aatctgatcc tttcacaaac tttgtagatg gtactaaaaa aggtgcaatc
    13261 ttaacaggta aagttgtaga agttgatgct aaaggcgtta aagttgaatt ggaaggtggc
    13321 gttgaagcat ttattcgtgc aaacgaagca actgctgagc gtgtagaaga catcacttct
    13381 gttatttctg ttggcgattc aatcgaagcg aaatacaccg gtgttgatcg taaatctcgc
    13441 gtagttaact tatctgttcg tgcaaaaaac gaagctgaag aatcagcagc aattgcacaa
    13501 gtgaacaaag aggaagttgt tgtacctaat gcatttgctg aagctttcaa agcagctaaa
    13561 ggcgaataat tagtatagac taatctaaaa tgggtatgtt ttgaacatac ccatttaaac
    13621 ttagaaatgc cattttgaat acttatt
//
LOCUS       DANLZD010000073        13618 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.073, whole genome shotgun sequence.
ACCESSION   DANLZD010000073 DANLZD010000000
VERSION     DANLZD010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13618)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13618)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13618
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.073"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            55..1008
                     /locus_tag="PXE26_001524"
     CDS             55..1008
                     /locus_tag="PXE26_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5594096.1"
                     /translation="MEIILRLLWRRLMALPVMILGVTALVFIVLQFTPGDPATVALGE
                     SASEAAKEIYREQHGLNDPLLVQYFRFLGNLFVLDFGMTTPPEQPIVDMIAKAFPLTL
                     QLTFIGVFLAAIVSFTLGVTAALYRDTWIDQLIRLISVAAVATPSFWLGILLIQYFSL
                     KLDWLPSGGFIPFSEDPKGYVNSMVLPSLALAVPVCASLIRVVRTTMVEEMDKDYVRT
                     AIGNGVPYSTVIRHNVLRNALITPVTVLGLRVGYLLGGAVVIEQIFDLPGMGKLIFNG
                     IVNHDLNLVQGVVLTIAFTFVLVNIIVDILYLLINPKIRSL"
     gene            1010..2980
                     /locus_tag="PXE26_001525"
     CDS             1010..2980
                     /locus_tag="PXE26_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/oligopeptide/nickel ABC transporter
                     permease/ATP-binding protein"
                     /protein_id="HDL5594097.1"
                     /translation="MFRQGLAARLASGGARFRALSTSSKIALLFIVFIALVAIFAPLV
                     APYDPLQTLRPVQAPSGDYLFGTDRLGRDIFSRMVWGARTSLFIGLGAVGVAILFGSI
                     LGATAATADKFGNEVIMRFMDILMAFPGIALAAVLLATFGNSVPVIIVTIAVVYTPQL
                     ARVVRANVVSQWEEDYVRAERVIGGSRTYILLKHVVRNTAAPVLVFATVMVADAIVFE
                     ASLSFLGAGVQPPFPSWGNILSEGRNLVLSGFWWATTFAGIMILLTVLALNILAEGLT
                     DALVNPKLKRSTQSKEDVAKPLATDVQEAMSETLALKRYLLKLHEKETTRTDRMQLNS
                     TAKPILQVKNLSIRFPNRYGETPLVDNISFTVHEGETMGLVGESGCGKSITAFSIMGL
                     LPKTAKITGEILFTDRSGKQHNLLESADLNALRGHEISMIYQDALSALNPSMRIKDQM
                     AQLISRGGKQSAETLLQWVKLDPEKTLNRYPHELSGGQRQRVLIAMALAREPKLLIAD
                     EPTTALDVTVQAEVIKLLNELREKLGFAMVFVSHDLALVAQIAHHITVMYAGQVVETA
                     PTTPLLANPTHEYTRGLLGSVLSTELRAERLYQIPGSVPSPFDFAKGDRFASRSLRPD
                     ANPEQHLKLVPTGDHPQHFWASHLEDPQSKEA"
     gene            2995..3801
                     /locus_tag="PXE26_001526"
     CDS             2995..3801
                     /locus_tag="PXE26_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5594098.1"
                     /translation="MSMKFIKEQPIIELSNIVVQFASRDGTLFNPKKFTAVNDVSLAI
                     HAGETVGLVGQSGCGKSTLASVMIGLQKPTSGTVKFNGLEMKYGSAEARKYFGSQVSV
                     IFQDPATALNPRMRVLDILKDPMDIHNILQPQEREKRVYDLLSRVGLPRSAALVEPTR
                     LSGGQKQRVAIARALALNPKLIVADEPTSALDVSVRAQVLNLLADLKKELNLAMVFIS
                     HDLQTVHQVSDRIVVMNGGKIVEMGDASDVFERPTQEYTRTLIEAAPSLL"
     gene            3864..5450
                     /locus_tag="PXE26_001527"
     CDS             3864..5450
                     /locus_tag="PXE26_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDL5594099.1"
                     /translation="MIQITQTINIDLLIVGSGIAGLSAAVEAKEKGINTLLISKSTIG
                     SGASYFPLKATLGIQVTGDEADKIHFKEDIENIGKGKINPNVVQAYIEDSPQAIELLH
                     RIGFQPWKRNDNRPACFAKYPRPIYLIKDWRESALRAKQILQEQHIAFYENATLLHIV
                     TDNNQVQGAVFSLTTSGQISYIFCKTKHLILAAGGIAGLYKDNLYPADVIGSLHYVAQ
                     QAGATLVNLAFIQFIPAFVEPKYKVLFGEHTLKYVTQITDSKGNNLFPHLNAEQFAKM
                     VLERSHYAPFSLDFAGVEFDLVMMKHLLENPHEKGIYLKYSPKLYEDTEEFYTVYLNW
                     LKNEVGIDLVQDKIAIKPFAHSCNGGIQINQWGESAVKGLFAIGEISHCIEGANRMGG
                     NSVGGGLVFAKRAVSEIVRSLEQNDLQKNSEISPLAMAEKALNQLANSTANLELTASE
                     VLSTIREKMALYANVYRTRSNLKLLLEELNRLEQEFDPIYHAQYQGIEIYNALKTAQL
                     VVNQMLNEQSLGAHYLDEQN"
     gene            5496..6878
                     /gene="nhaC"
                     /locus_tag="PXE26_001528"
     CDS             5496..6878
                     /gene="nhaC"
                     /locus_tag="PXE26_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDL5594100.1"
                     /translation="MNNYLLKLKPMTAVILSLLTVFILGFTMIGLGWVPQISILAVIV
                     MLLLFGLINKIPFKNMQEGMASGLMSSIGAVYLFFFIGLLVSALMMSGAIPTLMYYGL
                     SVISPELFYISAFALSSVVGIALGSSLTTTATIGVAFIGMASAFGANPAIVAGAVVSG
                     AFFGDKTSPLSDTTTIAASVVGIDMFAHIRNMLYTTIPAWILTALFLWFLTEPTDAQN
                     LANIENLKTNLQETGLIHGYSLLPFVTLILMAIKRVNSIYIIVTTVTLSLIITYIHSS
                     PTLEQLGNYFFTSYKPVEGVDLGEVASLVSRGGINSMFFTITIVLLALSLGGLLQILG
                     ILPALLNGISGFLTSTGRVTLVVASTAVGINVLIGEQYLSLLLSGNTFRSTYERLGLE
                     VKNLSRTIEDAGTVINPLVPWGVCGVFISSVLNVPVLDYLPYAFFCYICLILTLIFGF
                     TGVTISKKAN"
     gene            complement(6921..8117)
                     /gene="ispC"
                     /locus_tag="PXE26_001529"
     CDS             complement(6921..8117)
                     /gene="ispC"
                     /locus_tag="PXE26_001529"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HDL5594101.1"
                     /translation="MKKLVILGSTGSIGKSTLSVVEHNPNPNQYEVFALVGGKNVELM
                     LEQCRQYQPTFAAMDDEKSAQALKTALATLGSKTEVLAGQAAICELAAHSEVDMVMAA
                     IVGAAGLLPTLSAVKAGKTVLLANKESLVTCGQIFIDEARKSGAKLLPVDSEHNAIFQ
                     SLPPEAQQKVGFCPLAELGVSKIILTGSGGPFRTKPLNEFDAITPAQAVAHPNWSMGK
                     KISVDSATMMNKGLEYIEARWLFNATAEEMDIIIHPQSIIHSMVRYIDGSVIAQMGNP
                     DMCTPIAHTMAYPNRINAGVPPLDFFKLKELTFIEPDFARYPNLKLAIEAFAEGQYAT
                     TAMNAANEIAVEAFLNEQIRFTDIVNVNRTVVENIAPIQVSEIADVLHIDKLARELAK
                     QAVLQL"
     gene            complement(8236..10434)
                     /gene="relA"
                     /locus_tag="PXE26_001530"
     CDS             complement(8236..10434)
                     /gene="relA"
                     /locus_tag="PXE26_001530"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP diphosphokinase"
                     /protein_id="HDL5594102.1"
                     /translation="MVAIRYSHQLEPNNFELSSWCASLNMSPVTFEQIHNAWSYAQEK
                     LDTDYSLMWYGIEMVEVLHGLNMDDDSLVAAMLFPLVKHNVIDLVQLKEDFSNDIKNL
                     VKGVLEMENIRQLSANNVSDLQIDNIRRMLLAMVDDFRCVVIKLAERIAYLRDSNHHS
                     EEDTVLAAKECSHVYAPLANRLGIGQLKWELEDYCFRILHPVSYTQIAKFELGERRVD
                     RERYIANFVADLTACLSPEIKNVQIYGRPKHIYSIWKKMQKKRLRFNQLFDIRAVRVI
                     VPTLEDCYTALGIIHTKYTHLPEHFDDYIANPKPNGYQSIHTVVLGEGEKTIEVQIRT
                     QQMHDDAELGVAAHWKYKEGATAGRSGYEEKIVWLRKLLEWQNDLADSGDMVAEMRSQ
                     IFDDRVYVFTPRGEVIDLPQKATPLDFAYAIHSEIGHRCIGAKVAGRIVPFTYHLQMG
                     DQVEIITQKEPNPSRDWLNPNTGFVNTGKARSKIIAWFKKLDREKNIPIGKEALEAEM
                     EKFGFTLKQIEEYALPRYNLKQFDDLYAGIGGGDIRLHQLMHFLQSKLIKPTAEQEDE
                     AVLKQVNKNTNQPKPSKGYVIVEGVGNLMHSIARCCQPIPGDEIVGYITQGRGISIHR
                     ADCEQLFELQSLNPERVVEADWGEGYTSGLSLTIRVIANDRNGLLRDVSAIMANEKVN
                     VLGVSSRTDVKRSLATIDMEIQLNNVEILNKLLARIAQLDDVIEAKRLSS"
     gene            10688..11995
                     /locus_tag="PXE26_001531"
     CDS             10688..11995
                     /locus_tag="PXE26_001531"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HDL5594103.1"
                     /translation="MTILALGINHKTASVGLREKVAFVDDKRKLALEQIQTSGLAESV
                     VILSTCNRTELYFHQPNISPREESEENIQWREQCFRWFAQIHQLDESELRECLYFKQN
                     LEAANHLMKVASGLDSLILGEPQILGQVKQAYQYSEDFYQHQQKAMSTKLSRLFQRTF
                     ATAKRVRSETEIGSQAVSVAYAACGLARQIFDNFGKLRFLLVGAGETIELVARYLIQH
                     GAKNIMLANRTHIRAEMLAEKLNAPMQILSLSALQLGLNQADVVISSTGSPDTLISKE
                     MVEIAQKQRQFDPLLLIDIAVPRDIDEKAGDLEGVYAYSVDDLQNIIQRNMAQREEAA
                     KQAAEIVKEESKAFFEWLKQQQSSDLIKRYRQDAEQTRQELLEKALQAISQGQDSQKV
                     LSELSYKLTNQLLHAPTQALQAMAKSGNSTGLQSFSRALRLEE"
     gene            12180..>13618
                     /gene="der"
                     /locus_tag="PXE26_001532"
     CDS             12180..>13618
                     /gene="der"
                     /locus_tag="PXE26_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HDL5594104.1"
                     /translation="MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGH
                     ANIAGYDFIVIDTGGIDGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGI
                     AQYLRQREKTTVVVANKTDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLA
                     PLGEQLNAEQFNQEQAGENAKNVANEETDEWDTEFDFENEEDAALLDEALAEEAEESI
                     EDKNIKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIID
                     TAGVRKRGKVNLAVEKFSVIKTLQAIQDANVVLLTIEAREGISDQDLSLLGFILNAGR
                     SLVIVVNKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAY
                     TCATQKTSTSMLTRILRMAADEHQPPLVNGRRVKLKYAHPGGYNPPIIVIHGNQVEKL
                     ADSYKRYLSNYFRKSLKIIGSPIRILFQEG"
BASE COUNT         3875 a         2936 c         2809 g         3998 t
ORIGIN      
        1 tgtaggtaaa cttagattta attttggagt gtaactacac tcaaggagaa gaaaatggaa
       61 attatactcc gattattatg gcgtcgccta atggctctgc cggtaatgat cttaggcgta
      121 actgccttgg tatttattgt tttacaattc acccccggag atccggcaac cgttgctctc
      181 ggtgaaagcg ccagcgaagc cgctaaagaa atctatcgtg aacaacatgg gttaaatgat
      241 ccattgcttg tacaatattt tcgcttttta gggaatttat tcgtattaga tttcggtatg
      301 acaacccctc cagaacagcc tattgttgat atgattgcta aagcattccc tttaacatta
      361 cagcttacct ttattggggt cttcttagct gctatcgtct ctttcacatt aggtgtaacg
      421 gcagcacttt accgtgatac ttggattgat caattaatcc gtttaatctc ggttgccgct
      481 gttgccacac cttctttctg gttgggtatt ttattgattc aatacttctc cttaaaatta
      541 gattggttgc cttcaggcgg ttttattcca tttagcgaag atccaaaagg ctatgtaaac
      601 tcaatggttc tcccttcact cgctttagct gttcctgtat gtgcctcatt gatccgtgtc
      661 gtgcgtacaa caatggtaga agaaatggat aaagattatg ttcgaacagc catcggtaat
      721 ggtgtacctt actcaacggt gattcgccac aacgtgcttc gtaatgcctt aattactccg
      781 gtaacagtat taggtttacg ggttggttat ttattaggtg gtgcagttgt gattgaacag
      841 atcttcgact taccgggaat gggtaaatta attttcaacg gtatcgtcaa tcacgacttg
      901 aacttagtgc aaggtgtagt attaactatc gcatttactt tcgtgttggt gaatatcatt
      961 gttgatattc tttacttgct cattaatcca aaaattcgga gtttataata tgtttcgcca
     1021 aggattagct gctcgacttg cttcaggcgg tgcaagattt agagcattat caaccagctc
     1081 aaaaatcgcc ttactcttta ttgtatttat cgcattagtc gctatttttg caccattagt
     1141 agcgccttat gacccactgc aaacgctacg tccagtgcaa gctccaagcg gtgattattt
     1201 attcggtaca gaccgtttag gacgtgatat tttctcgcgt atggtatggg gagcaagaac
     1261 atctctcttt atcggtttag gtgcggtagg cgttgcgatt ctattcggta gtattttagg
     1321 ggcaactgcg gcaaccgccg ataaattcgg taacgaagtg attatgcgtt ttatggatat
     1381 cttaatggca ttcccgggta tcgcattagc tgctgtatta cttgccactt tcggtaactc
     1441 tgtacctgtg attatcgtga ctattgcggt tgtttacact ccccaacttg cccgagtggt
     1501 gcgtgctaac gtagtatctc aatgggaaga agattatgtg cgtgccgagc gtgtaattgg
     1561 tggtagccgt acttatattc tattaaaaca cgttgtgcgt aatactgctg caccggtttt
     1621 agtattcgca acagtgatgg ttgctgatgc catcgtattt gaagcatcac tttcattctt
     1681 aggtgcaggt gtccagcctc cattcccatc ttggggaaat atcttatctg aaggtcgtaa
     1741 ccttgtatta agtggcttct ggtgggctac aactttcgca gggattatga ttttattaac
     1801 cgtacttgcg ttaaatatcc ttgctgaagg cttaaccgat gcgttagtaa atccaaaact
     1861 aaaacgttca actcaaagta aagaagatgt cgcaaaacca ttggcaacag acgttcaaga
     1921 agcaatgtct gaaactcttg cgttaaaacg ttacttactc aaattacacg agaaagaaac
     1981 gacccgtact gaccgtatgc aattaaactc aacggccaaa ccgattttac aagtgaaaaa
     2041 cttatcaatc cgtttcccaa atcgttatgg tgaaactccg cttgttgata atatcagctt
     2101 tactgttcac gaaggcgaaa ccatgggctt agtgggtgaa tctggttgtg gtaaatcaat
     2161 caccgcattc tcaattatgg gtttattacc aaaaactgca aaaatcactg gtgaaatcct
     2221 ctttaccgac cgttcaggta aacaacacaa tcttttagaa tcagccgatt taaatgccct
     2281 tcgtggtcac gaaatctcga tgatttacca agatgcatta agtgcgttaa acccatcaat
     2341 gcgtattaaa gaccaaatgg cacaattaat cagccgtggt ggtaaacaat cagcagaaac
     2401 attattgcaa tgggtaaaac ttgacccgga aaaaacgctc aaccgttatc ctcacgagtt
     2461 atctggagga caacgtcagc gtgtattaat tgcaatggca cttgctcgtg aaccgaaact
     2521 attgattgct gatgaaccaa caacagcatt agacgtaacc gttcaagctg aagtgatcaa
     2581 attattaaac gaattacgtg agaaacttgg atttgcaatg gtattcgtga gccacgactt
     2641 agctttagtg gcacaaatcg ctcaccacat cacggtaatg tatgctggtc aagtggttga
     2701 aactgcacca actacgccat tattggcaaa cccaacacac gaatacacac gtggattatt
     2761 aggctcggta ctttctaccg aattgcgtgc agaacgccta taccaaattc cgggcagtgt
     2821 gccttcacca tttgattttg cgaaaggtga ccgttttgcg agtcgttcat taagaccaga
     2881 tgcaaaccct gaacagcact tgaaattagt gccaaccggt gatcacccac aacacttctg
     2941 ggcttcacac ttagaagatc cacaatctaa agaagcataa aggagagcaa tacgatgagt
     3001 atgaaattta tcaaagaaca gccaattatt gaactgtcta atattgttgt gcaatttgct
     3061 tctcgtgacg gcaccttatt taacccgaaa aaattcacgg cggtaaatga tgtcagccta
     3121 gcaattcacg ccggtgaaac agtcggtctg gttggacaat ctggttgtgg caaatctact
     3181 ttagccagtg tgatgatcgg gcttcaaaaa ccaacctccg gcacagtaaa atttaacggc
     3241 ttagagatga aatatggcag tgcggaagct cgcaaatatt tcggtagcca agtgtcagta
     3301 attttccaag acccggcaac cgccctaaat ccgcgtatgc gtgtgttgga tattttaaaa
     3361 gatccgatgg atattcataa tatcttacaa ccgcaagaac gtgagaagcg ggtttatgat
     3421 ttgctctctc gagtcggtct acctcgttca gcggcgttgg tcgagccaac ccgattatct
     3481 ggtgggcaaa agcaacgtgt agcgattgct cgtgcattgg cattaaatcc gaagctgatt
     3541 gtggctgatg aaccaacctc tgcacttgac gtatcggttc gagctcaagt actgaacctg
     3601 ctggcagact tgaaaaaaga actcaattta gcgatggtat ttatctctca cgacttacaa
     3661 accgttcacc aagtttcaga ccgcattgtg gttatgaacg gcggtaaaat tgtggaaatg
     3721 ggcgatgctt cagacgtatt tgaacgccca acgcaagagt acacccgaac cttaattgaa
     3781 gcagcaccat ctttattata attgtgcttt gtgcctacaa gcggtaaaat ttttcgcaaa
     3841 ttttaccgct tgtgttttta tttatgatcc aaattaccca aaccattaac attgatttat
     3901 taattgtcgg ctctggcatc gctgggcttt ctgctgcagt tgaggcaaaa gaaaaaggca
     3961 ttaatacctt actgattagc aaatctacga ttggctcggg agcgagctac tttccgctta
     4021 aggcaacact tggcattcaa gtaaccggcg atgaagccga taaaattcac tttaaagaag
     4081 atattgaaaa catcggcaaa ggcaaaatca accctaatgt ggtacaagcc tatatcgaag
     4141 attcaccaca agcgattgaa ctactccacc gtatcggctt tcagccttgg aagcgtaacg
     4201 acaaccgtcc ggcttgtttt gccaaatacc ctcgcccaat ttatttaatt aaagattggc
     4261 gggaatctgc cctacgagcg aaacagattt tgcaagagca acacattgct ttctatgaaa
     4321 atgctaccct tttacacatc gtcacagaca ataaccaagt gcaaggtgcg gtattttcgc
     4381 tcactacaag cggtcaaatt tcctatattt tttgcaaaac caagcatctt attttagccg
     4441 caggcgggat tgctgggctg tataaagata atctctaccc ggctgatgtt atcggttcac
     4501 ttcattatgt ggcacaacaa gccggggcaa ccttggttaa tcttgccttt attcagttca
     4561 ttcctgcctt tgtcgagcca aaatacaagg tgctatttgg cgaacataca ttgaaatatg
     4621 tcacccaaat caccgattct aagggtaaca atctatttcc acacttaaat gccgagcaat
     4681 ttgcaaaaat ggtgctggaa cgtagccatt atgctccttt cagccttgat tttgccggcg
     4741 tggagttcga tttagtgatg atgaaacatt tgcttgaaaa ccctcacgaa aaaggcattt
     4801 accttaaata cagccccaaa ctgtatgaag acacggaaga gttttatacc gtctatttga
     4861 attggctcaa aaatgaagtc gggattgatt tagtgcaaga taagattgca atcaagccgt
     4921 ttgctcatag ctgtaacggc ggcattcaaa ttaatcaatg gggcgaaagt gcagtaaaag
     4981 ggctatttgc gattggtgag atttctcact gcattgaagg ggcaaaccgt atgggtggta
     5041 actcagtcgg cggtggctta gtgtttgcca aacgtgcggt atcggaaatt gttcgttcgc
     5101 tagaacagaa tgatttgcaa aaaaacagcg aaatctcacc gcttgcaatg gcagaaaaag
     5161 cattaaatca gcttgctaat tcaactgcta atctagaact aactgccagt gaagtgcttt
     5221 ctactattcg agagaaaatg gcgttatacg ccaatgtgta ccgcactcgg agcaacctca
     5281 aactactact tgaggaatta aaccgtttgg aacaagaatt tgacccaatc tatcacgctc
     5341 aatatcaagg cattgaaatt tacaatgcgt taaaaaccgc tcaattagtg gtcaatcaaa
     5401 tgctaaatga gcagagttta ggcgcgcact acttagatga acaaaattag tctataatag
     5461 ccaacttatt taaaaataat aaattaggag tataaatgaa taactaccta cttaaattaa
     5521 aaccaatgac agcggtcata ctttcgcttt tgacggtctt tatcttaggt tttacaatga
     5581 ttgggcttgg ctgggtgcct caaatttcaa ttctagccgt gattgtaatg ctgctacttt
     5641 tcggcttaat caataaaatt ccgtttaaaa atatgcaaga gggtatggca agcgggctga
     5701 tgtccagtat tggtgcggtt tacctattct tttttattgg attattggtt tcagctttga
     5761 tgatgtctgg tgcgattcca accttaatgt attatggctt aagtgtgatt tcacctgaat
     5821 tattttacat ttctgcattc gcattaagtt ctgtagtagg tattgcgtta ggcagtagtt
     5881 taaccacaac cgccaccatc ggtgttgctt ttatcggtat ggcttctgct ttcggtgcga
     5941 accctgcgat tgtagcaggt gcggtggttt caggggcgtt ttttggcgat aaaacctctc
     6001 cactttcaga cactactacc attgctgctt ccgtagtggg cattgatatg ttcgctcata
     6061 tccgtaatat gctttatacc accatccctg cgtggatttt aacagcatta ttcctttggt
     6121 ttttaaccga acctactgat gcacaaaatt tagcaaatat agagaaccta aaaaccaatt
     6181 tgcaagaaac aggattaata cacggctact ctttgctacc ttttgttacg ttaattttaa
     6241 tggcaattaa gcgtgttaat tcaatttata ttattgtaac tacagtaaca ctctcgctaa
     6301 ttattaccta tatccacagt tcgccaaccc ttgaacagct agggaattat ttctttacca
     6361 gctataaacc tgttgaaggc gtagatttag gcgaagtggc atcattagtc tctcgtggtg
     6421 gcattaatag tatgttcttt accatcacta ttgtattgct tgcgttaagt ttaggtggtc
     6481 ttttacaaat cctcggcatt ttaccggcac tacttaacgg cattagcggc tttttaacca
     6541 gcacaggacg tgttactctt gtagttgcca gcactgcggt gggaattaac gtcttaatcg
     6601 gtgagcaata tttgagctta ttgttatcag gtaatacttt ccgctcaact tatgaacgtt
     6661 taggcttaga agtgaaaaac ttatctcgca ccattgaaga tgcaggcacg gtaatcaacc
     6721 cattagtccc ttggggcgtg tgcggtgtgt ttatcagtag cgtattaaat gtaccggtgt
     6781 tagattatct accatacgca ttcttctgtt atatctgttt aatccttacc ttaatttttg
     6841 gatttaccgg ggtaacaatc agtaaaaaag ctaactaata tgtgaaaaat gcctacaaat
     6901 ttgtaggcat tttcttttca ttagagctga agaacagctt gtttggctaa ctctctggcg
     6961 agtttatcaa tatgcaatac atcagcaatt tcactgactt gaattggagc aatattttcc
     7021 accaccgttc tattcacgtt cacaatatcc gtaaagcgga tttgctcgtt taaaaacgcc
     7081 tcaacggcaa tttcattggc ggcattcatc gctgttgtcg catactgtcc ttctgcaaaa
     7141 gcctcaatcg ctaattttaa gttcgggtaa cgggcaaaat ccggctcgat aaaggttagc
     7201 tcttttaatt taaagaaatc taatggtggc acaccagcat taattcggtt tggatatgcc
     7261 atcgtgtgag caatcggcgt acacatatcc gggttgccca tttgagcaat caccgagcca
     7321 tcaatataac gcaccatcga atgaataatt gattgtgggt gaatgatgat atccatttcc
     7381 tcggctgttg cattaaacaa ccagcgggct tcaatatact ccaagccttt gttcatcatt
     7441 gtggctgaat cgactgaaat tttcttaccc atagaccaat tggggtgagc aactgcttga
     7501 gccggtgtaa tcgcatcaaa ttcatttaat ggcttagtac ggaacggtcc acccgatcct
     7561 gttaaaataa ttttactgac acccagttca gcgagtggac aaaacccgac tttttgctgt
     7621 gcctccggtg gaagcgattg gaaaatcgca ttgtgttcac tatctaccgg taagagcttc
     7681 gcaccggatt tacgagcctc atcaataaaa atttgcccac aggttaccag cgattcttta
     7741 tttgccaaca atacggtttt acccgctttc accgcagaaa gtgtcggtaa taaccctgct
     7801 gctcctacaa tagcagccat taccatatcc acttcggaat gtgcagcaag ctcacaaata
     7861 gctgcttgac cggctaacac ttcagtttta gaccccaaag ttgccaatgc cgtttttaat
     7921 gcttgtgcgg atttttcatc atccattgcc gcaaaagtcg gctgatattg acgacattgc
     7981 tccagcatta attcaacatt ctttccacca actaacgcaa acacctcata ttggtttggg
     8041 tttgggttat gctcaactac cgataaagtg cttttaccga tagaacctgt tgaacctaaa
     8101 atcactaatt ttttcatttt gtttctcttt atctaatgac tgataagggc gaaagatttt
     8161 tcgcccctac gccgtaatta tgcggatact cattcgttgt ttgtaaattg tttagcaaaa
     8221 acaaccgctt gtagattaac tcgaaagccg ttttgcttcg ataacatcat ctaattgagc
     8281 gatacgagcc aataatttat tcaaaatttc aacgttgtta agctgaattt ccatatcaat
     8341 ggtggcaagg ctacgtttca catcggttcg gctggaaacg cctaacacgt ttactttttc
     8401 atttgccata attgcactga catctcgcag taagccgttg cggtcattgg caatcactcg
     8461 aatggttaag cttaaaccag aggtatagcc ttcgccccaa tccgcctcca caactcgttc
     8521 tgggttgaga ctttgtaatt caaacagttg ctcacaatct gcacggtgaa tcgaaatccc
     8581 tctgccttgt gtgatgtaac ccacgatttc atcacccgga atcggctggc agcaacgggc
     8641 aatggaatgc attaagttcc ctacgccctc tacaatcaca tagcctttgc ttggcttcgg
     8701 ctgattggtg tttttattca cctgtttaag taccgcttcg tcttcttgtt cggcggtcgg
     8761 tttaattaat tttgattgca agaagtgcat taactgatga agacgaatat cgccaccgcc
     8821 aataccggca tagagatcat caaactgttt taagttatag cgaggcagag catattcttc
     8881 aatttgcttg agcgtaaaac cgaatttttc catttcggct tcaagggcct ctttgccgat
     8941 tggaatattt ttctctcggt ctaatttttt aaaccacgca ataatttttg agcgagcttt
     9001 gcctgtattc acaaaaccgg tattcggatt gagccaatct cggcttgggt tcggctcttt
     9061 ttgggtgata atttcaacct gatcgcccat ttgcagatga taagtaaacg gcacaatccg
     9121 ccctgccact tttgctccaa tgcaacgatg cccgatttca ctatgaattg cataagcaaa
     9181 atcaagtggt gtagcttttt gcggtaaatc gatcacctcg cctcttgggg taaagacata
     9241 aacacgatca tcaaaaattt gcgaacgcat ttctgccacc atatcgcctg aatcggcaag
     9301 atcgttttgc cactcaagca atttgcgtag ccacacgatt ttttcttcgt agcccgaacg
     9361 ccctgcggtt gccccctctt tatatttcca gtgagcggct acgcctagct ccgcatcatc
     9421 gtgcatttgc tgggtacgaa tttgcacttc aatcgttttt tcaccttcgc ctaatacaac
     9481 tgtatgaata gactgataac cgttaggttt tgggttagca atataatcat cgaaatgttc
     9541 cggcaaatgg gtatatttgg tgtgaataat gcctaatgcc gtgtagcaat cttctaacgt
     9601 tggcactatt acccgcacag cccgaatatc gaaaagctga ttaaatctca accgtttttt
     9661 ctgcattttc ttccaaatgc tgtagatatg tttcgggcgt ccataaatct gcacattctt
     9721 gatttcagga cttaaacaag cggtcagatc tgctacaaaa tttgcaatat aacgctcacg
     9781 atccacacgg cgttcgccca attcaaattt agcaatttga gtgtaagaga cagggtgtaa
     9841 aatgcggaaa cagtaatctt ccagctccca tttgagctgc ccgataccca atcgattggc
     9901 aagcggtgca taaacgtgag aacattcttt agcggcgaga acggtatctt cttcggaatg
     9961 gtggttacta tcacgcaggt aggcaattcg ttcggcaagt ttaatcacca cacagcggaa
    10021 atcgtccacc atcgccaaca acatgcgacg gatattgtcg atttgcagat ccgacacatt
    10081 attggcacta agctggcgga tattctccat ttcgagtacg cctttaacta agtttttgat
    10141 gtcgttactg aaatcttctt ttaattgcac caagtcgatc acattgtgtt ttaccagagg
    10201 aaaaagcatt gcggcaacta agctgtcatc gtccatattc aagccgtgca atacttcaac
    10261 catctcaatg ccataccaca tcagactata gtcggtatcc agtttttcct gtgcataact
    10321 ccacgcattg tgaatctgct caaaagtcac aggagacata ttcaggcttg cacaccaact
    10381 cgacaactca aaattattcg gttcaagttg atgggaataa cgaattgcta ccataaggcc
    10441 tccttgtaaa tttttgtgga aattagaccg cttgtacagc ttaaaatgga gttttattat
    10501 acgtggaaat tcagaaaaaa tttaccccta atcgaaaatt taatccaagt tatcttatcc
    10561 tctttactcc ttaagaggta gcaaccttgt gataaatcaa acctatcaac acaatcattt
    10621 gcacgacttc acgctcttga ttaaaatact tgcgttttta ttttgatctt tatttttgtg
    10681 ggtagcaatg acaattttag ctttaggaat caaccataaa accgcctctg tgggtttaag
    10741 agagaaagtg gcgtttgtag atgacaaacg taaactggct cttgaacaaa tccaaacgag
    10801 cggattggct gaaagcgtgg tcattctctc tacctgcaac cgcaccgagc tctacttcca
    10861 ccagcctaat atttctcccc gtgaagagag cgaggaaaat atccaatggc gtgaacaatg
    10921 tttccgctgg tttgcccaaa ttcatcaact tgatgaaagc gagttgcgtg aatgtttata
    10981 ttttaaacaa aatttagaag ccgctaacca cttaatgaaa gtggcaagcg gattagattc
    11041 actaatttta ggcgaaccac aaattttagg gcaggttaaa caagcctatc aatatagcga
    11101 agatttctac caacatcagc aaaaagcgat gtccaccaag ctatcacgct tgttccaacg
    11161 cacctttgcc accgcaaaac gagtacgttc cgaaaccgaa atcggcagcc aagcggtgtc
    11221 agttgcttat gcagcttgcg gtttagcccg tcaaattttc gataattttg gcaagttacg
    11281 ctttttgctg gtaggggcag gcgaaaccat tgaattagtc gcccgctatt taattcaaca
    11341 cggggcgaaa aatataatgt tggcaaaccg cacccatatt cgggcggaaa tgttggcgga
    11401 aaaactaaac gctccaatgc aaattctgtc gttaagtgct ttgcaactcg gtttaaacca
    11461 agctgatgta gttattagct ccaccggtag ccctgatacc ctaatcagta aagaaatggt
    11521 ggaaattgcg caaaaacaac gccaatttga cccacttttg ctgattgata ttgccgttcc
    11581 tcgtgatatt gacgaaaaag ccggcgactt agagggcgtt tacgcttata gtgttgatga
    11641 tttacaaaat attatccaac gcaatatggc tcagcgtgaa gaagccgcca aacaagccgc
    11701 tgaaatcgtc aaagaggaaa gcaaagcatt ttttgaatgg ttaaaacaac agcagtctag
    11761 tgatttaatc aaacgctatc gtcaagatgc ggagcaaacc cgccaagaat tgttggagaa
    11821 agccctacaa gcaatcagtc aagggcaaga cagccaaaaa gtattaagtg agctaagcta
    11881 caaactcacc aaccagttac tacacgcccc aacccaagcg ttacaagcaa tggcaaaaag
    11941 tggcaactcc accggcttac aaagtttttc aagagcatta cggctagaag aatgatgctc
    12001 agcacattct tttaggcata tttgcaaaaa attgaacatt tttaaccgct tgcggacgca
    12061 cgccgtgcgt ccctccccgt gttcccgatc ttcttctaat ttcaacttcc ccaaatttcc
    12121 gctataataa gccaattttt gcaactattt tgcaaataac cggatataga ggatacaaaa
    12181 tgactcctgt tgttgcccta gtgggcagac ctaatgtcgg caaatcgact ttatttaacc
    12241 gtttaacccg tactcgagat gccttagtag cagatttccc cggcttaacc cgagaccgta
    12301 aatatggtca cgctaatatt gccggctacg atttcattgt aatcgacacc ggtggtattg
    12361 atggtacaga ggaaggcgtg gaagaaaaaa tggcggaaca atctttattg gcgattgaag
    12421 aagccgatgt ggtgcttttc ttggttgatg cccgagccgg attattacct gccgatgtcg
    12481 gcattgctca atatttacgc caacgtgaaa aaaccacggt ggtggttgcc aataaaaccg
    12541 atggtattga tgccgactct cactgtgccg aattctatca attaggctta ggcgaagtag
    12601 aacaaattgc tgcagcacaa gggcgtgggg ttacgcagct tatcgagcaa gtgttagctc
    12661 ctttaggcga acagctaaat gccgagcaat ttaaccaaga acaagcgggc gaaaatgcta
    12721 aaaatgttgc aaatgaagaa acagacgaat gggataccga attcgacttt gagaacgaag
    12781 aagatgcggc attattagat gaagccttgg cagaagaagc agaagagtcg attgaagata
    12841 aaaatatcaa aattgcgatt gtcggtcgtc cgaatgttgg taaatcaaca ctgaccaacc
    12901 gcattttagg cgaagagcgt gtggtagttt atgatatgcc aggaacaacc cgtgattcta
    12961 tttatattcc aatggagcgt gacggtcagc aatataccat cattgatacc gccggtgtgc
    13021 gtaaacgtgg caaagtgaat ttagcggttg agaaattctc ggtaattaaa accttgcaag
    13081 ccattcaaga tgcaaacgtg gtgctattaa ctattgaggc ccgagaaggt atttccgatc
    13141 aggatttatc actactcggc tttattctaa atgctggtcg ttcattggtg attgtggtaa
    13201 acaaatggga cggcttgtcg caagatatta aagatcaagt gaaatcagag ttagatcgcc
    13261 gtttagattt tattgatttt gccagagtgc attttatctc ggcattgcac ggctcaggcg
    13321 tggggaattt gtttgattca gtaaaagaag cctacacttg tgcaacgcaa aaaacctcga
    13381 cctcaatgct gactcgcatt ttgcgtatgg ctgctgatga acaccaacca ccattggtta
    13441 atggtcgccg agtgaaatta aaatatgctc acccgggtgg ctacaaccca ccaattattg
    13501 tgattcacgg caatcaggtt gaaaaattag cggattctta caaacgttat ttaagtaatt
    13561 atttccgtaa aagtttaaaa attatcggct cgccaattcg gattttattc caagaagg
//
LOCUS       DANLZD010000074        13563 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.074, whole genome shotgun sequence.
ACCESSION   DANLZD010000074 DANLZD010000000
VERSION     DANLZD010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13563
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.074"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            107..661
                     /gene="srlA"
                     /locus_tag="PXE26_001533"
     CDS             107..661
                     /gene="srlA"
                     /locus_tag="PXE26_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725059.1"
                     /note="catalyzes the phosphorylation of incoming sugar
                     substrates along with their translocation across the cell
                     membrane; the IIC domain forms the PTS system
                     translocation channel and contains the specific
                     substrate-binding site; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIC"
                     /protein_id="HDL5594105.1"
                     /translation="MIEAITHGAEWFIGLFQKGGETLVGMINGILPLLISLLVVMNAL
                     IKFVGQDRIERLAQRSAGNPISRYLILPVIGTFVFCNPMTLSLGRFLPERYKPSYYAA
                     ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLGLPLGPLAISYLLVGMFTNFFRGWI
                     TDFTTAFFEKRMGITLDREVHLSH"
     gene            692..1693
                     /locus_tag="PXE26_001534"
     CDS             692..1693
                     /locus_tag="PXE26_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HDL5594106.1"
                     /translation="MSNKAIYIEKGNGGWGGPLTLPVVEGKKVLYMTGGTRPAIVNKL
                     VELTGWEAVDGFKEGEPPAEEIGIAIIDCGGVLRCGLYPKRRIPTINIHSTGKSGPLA
                     EFIVEDIYVSAVKENNIRLIDADGSVPVATEQAKPTSSTTATAKEYDSSKKITEQSDG
                     LLAKIGMGMGSVAALFFQAGRDTIDTVLKTILPFMAFVSALIGIIIASGLGDVIAHGL
                     TPLANSPIGLVTLALICSFPLLSPFLGPGAVIAQVIGVLVGTQIGLGNIPPHLALPAL
                     FAINAQAACDFIPVGLSMAEAKQDTVRVGVPSVLVSRFLTGAPTVLIAWAVSAFIYQ"
     gene            1738..2136
                     /gene="srlB"
                     /locus_tag="PXE26_001535"
                     /gene_synonym="gutB"
     CDS             1738..2136
                     /gene="srlB"
                     /locus_tag="PXE26_001535"
                     /gene_synonym="gutB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HDL5594107.1"
                     /translation="MHRLSKRENIYMTIIYQTTFTKIGNFAQESLTDDMLITFKQGAP
                     ADLQDYCFIHNPSELSSPLEVGDIAEFDGVAYPITAVGSVASENLSALGHITFRFDGA
                     NDAEFPGSVHVIGTPPQGLTENSTLIIKRD"
     gene            2184..2972
                     /gene="srlD"
                     /locus_tag="PXE26_001536"
     CDS             2184..2972
                     /gene="srlD"
                     /locus_tag="PXE26_001536"
                     /EC_number="1.1.1.140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbitol-6-phosphate dehydrogenase"
                     /protein_id="HDL5594108.1"
                     /translation="MNNEKKVAIVVGGGQTLGAFLSEGLADAGYRVVVADLNGENAQK
                     VAADINAKQGEGNAIGVQVDAADEPSVEALAKATDTVFGRADVLVYSAGTAKASPIWD
                     FNLNDFDLSVKVNLTGYFLTAKHFSRLMIRDGIKGRIIQINSKSGKVGSKYNSGYSAA
                     KFGGVGLTQSLALDLADKGITVHSLMLGNLLKSPMFQSLIPQYAAKLGIPESEVEQVY
                     IDKVPLKRGCDYQDVLNVLKFYAGEEAAYCTGQSINITGGQVMF"
     gene            3141..3521
                     /gene="gutM"
                     /locus_tag="PXE26_001537"
     CDS             3141..3521
                     /gene="gutM"
                     /locus_tag="PXE26_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GutM"
                     /protein_id="HDL5594109.1"
                     /translation="MDSITLLIILAMIMWLLQAVLGWLQIKAFNQAFMEISKKGKVTV
                     GRNSGRFNPKSVIVLAFDDEKKVVDSLCMKGFSVFARPQKLASVIGLSLDQIVPEKIF
                     PSDKRSQFALKVAISSGYSCSDQK"
     gene            3584..4231
                     /gene="hxpB"
                     /locus_tag="PXE26_001538"
     CDS             3584..4231
                     /gene="hxpB"
                     /locus_tag="PXE26_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpB"
                     /protein_id="HDL5594110.1"
                     /translation="MQINSVIFDMDGVMIDSEPQWAEAQIAVLADLGINITEQDCEQL
                     TRGKRIDELSDTWIKKFQLSVSNQALSEAILAHGCAAIEQHGKALTGLYELLDFLKSN
                     QIKLAVATSSPPVVIKAVFDRLKLWDYFPIRCSAMDEEYGKPHPAVYLSAVKKLGIEK
                     QECIVIEDSVTGLIAAKAANLTTFLVNTDYQNEKFSIADKRMASLLDVIEKLKQH"
     gene            4274..5071
                     /locus_tag="PXE26_001539"
     CDS             4274..5071
                     /locus_tag="PXE26_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor"
                     /protein_id="HDL5594111.1"
                     /translation="MKPFERRQQILAYLAQHGRTEVDVLADYFKLTGATIRKDLTSLE
                     EDKKVLRTYGSVVLIDEEILEREEKINKEDKDDKPLAQKTGINLQQKQAIGQKAAELI
                     NEGNSIIFDAGSTVLQMIPHLKAFDNLSLMTNSLTIFNEILKLNKSYNLLISGGTFRE
                     KSASFHGYFAESAFIGSNFDILFIGTDGLDLDVGLTTFNEVYKVSSLMCDAANKIVLL
                     ADSSKFGRKSPNIVCGLEKIHTIITDEGLSQEMREQIKAKGIELLVV"
     gene            5082..6017
                     /locus_tag="PXE26_001540"
     CDS             5082..6017
                     /locus_tag="PXE26_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HDL5594112.1"
                     /translation="MNHLDSAKETLNLYAQQIITLNHRLSEEFNEVVNMILACQGRVV
                     VGGIGKSGLVGKKMVATFASIGTPSFFLHPTEAFHGDLGMLKPIDMVILISNSGETDD
                     VNKLIPSLKNFGNKIIAMTGNPYSTLGRNADVILNIGVEREACLNNLAPTSSTLVTMA
                     LGDALAIALMKARDFRPEDFARYHPGGSLGRKLLNRVRDVMVRKVPTASLDTTFTECL
                     SVMNEGRMGVAVIMQDDKLEGIITDGDIRRTLAKFGAESLNKTADEIMTRNPKTINDT
                     EFLAKAEDLMKELKIHSLIAVNDEGKVTGLMEFSS"
     gene            complement(6061..6611)
                     /locus_tag="PXE26_001541"
                     /pseudo
     CDS             complement(6061..6611)
                     /locus_tag="PXE26_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005752768.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            6913..8772
                     /locus_tag="PXE26_001542"
     CDS             6913..8772
                     /locus_tag="PXE26_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICBA"
                     /protein_id="HDL5594113.1"
                     /translation="MSNLKVKVQGFGRFLSNMVMPNIGAFIAWGFITALFIPTGWLPN
                     ETFAKLVGPMITYLLPLLIGYSGGKLVGGERGAVVGAITTMGIIVGSEIPMFLGAMIV
                     GPLGGWAIKTFDKAIDGKVKSGFEMLVNNFSVGIIGMILAMLSFAFIGGIVTQISAAL
                     GAGVGALVEAGLLPVTSIIVEPAKILFLNNAINHGVFTPLGTAQAQEVGKSILFLIEA
                     NPGPGFGILLAYMFFGRGTAKQTAGSASIIHFLGGIHEIYFPYVLMSPRLILAVIAGG
                     ATGVLTNSLLGGGLIAPASPGSIFAILAMTAPGAHFAVVASVILSCAVTFAIASILLK
                     TQKGEASLEDAQAQTQAMKAESKGVVNGNINKIYVACDAGMGSSAMGASMLRKKVQAA
                     GLNIEVQNLAINDLPQDAQLVITHKDLTARATQRVATAQHLSLTNFLDSAFYDSLVAK
                     LANHQPQQAVQNTQNFANPVEEPQAEGLKLQAAQVFLGLQANSKEEAIRFAGEQLVKA
                     GFVQPSYVDAMFAREQMVSTYLGEGLAVPHGTSDAKDSVLKTGIVVCQYPNGVRFTDE
                     EDGVAKLVVGIAAKGNDHIQILSAITNALDDEQAMKTLTSTNDVEKVLALLSK"
     gene            8876..10015
                     /locus_tag="PXE26_001543"
     CDS             8876..10015
                     /locus_tag="PXE26_001543"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005557909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HDL5594114.1"
                     /translation="MNALHFGAGNIGRGFIGKLLADARIFVTFADINQTQIDQINQNK
                     QYGVKIVGDDSRVEIVKNIAAINSKDENAVIEQVKNTDLITTAVGPNVLGFIAPLFAK
                     ALVARVESGNTQPLNIIACENMVRGTTFFKGKIFEHLTAEQQAEIEKVVGFVDSAVDR
                     IVPPAEPNPADPLEVTVEEFSEWIVDQTQFKGDIPNIKGMELTDNLMAFVERKLFTLN
                     TGHLICAYLGKQAGVKWIKEAIAIEEIKTQVKATMEESGAVLIKRYGFDPQAHSAYIE
                     KILKRFANPYLNDDVNRVGREPIRKLSENDRLIKPLRGTLEYGLPYQNLVKGVVMALQ
                     YRNEEDPQAVELAEFIANHGVAAAVEKYTGLTDQAVIAQVVELYQ"
     gene            10027..10542
                     /locus_tag="PXE26_001544"
     CDS             10027..10542
                     /locus_tag="PXE26_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MltR family transcriptional regulator"
                     /protein_id="HDL5594115.1"
                     /translation="MMDYIDKLSEETTLRGFLSIANQRFAKAVEQLIERVFRKTDFAL
                     KSVVDSLFEHQGPLADIEVRLKVLLGLGVISPKVFEDISLFLEVKQHLNEEEDEFAFS
                     HPAVVKFAKDLHHIDFLPINELLNMKASAANKDSMLFQMQQMRLEKMVRSSLILAVTE
                     IDEQLNVESPL"
     gene            10682..12547
                     /locus_tag="PXE26_001545"
     CDS             10682..12547
                     /locus_tag="PXE26_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HDL5594116.1"
                     /translation="MQSLLSFVPDFLKQELFWVMALLVFAIWQFIQNKLRMDVVALIV
                     MLFFSLTNILSVKEVLAGLSDPNVVLIALLFIVGEGLVRTGVANQVSDWLMRVSGASE
                     TKVLVLLMLCIAGLGSFMSSTGIVAIFIPVVLAICSGMGISPRRLMMPLSVAGLISGM
                     MTLIATPPNLVAHSELVKSGFEGFNFFSFTPIGLIILVMGIGYMLIARRWLDNGEQSN
                     THSQAQKFSMSQLIEEYQLKERAKMVLVEADSDCVGKSIGQLNLRIEQGLNIIAIQRT
                     KRFRKITVSASVNEIFQPKDILLLDTALDDETYQQRCEQLKLRPIELKGEYFSSQYRS
                     VGMAEISVMPEAECIGKTIRELKFRSRYHLSIVGLKRGDEIIQEELLDTPLKFGDILL
                     VMGVWQQIHRMDDDHRDFFLLRDPAESKNAPPALSQAPHALFSVLTMVLLMITGIVPN
                     VMAALIACLMLGKFRCVDMKSAYDSIHMPSIVLIVGMMPFSIALQKTGGVDLTVRLLL
                     DAMQGLDVHFVLIVLFVVTAIISAFISNTATAILVMPIAIAIANQLGYSPAPFVMTVA
                     VSASAAFMTPVSSPVNTMVLAPAGYKFIDFVKVGVPFTVLVMLVSVFVIPMLFPL"
     gene            complement(12837..13088)
                     /locus_tag="PXE26_001546"
     CDS             complement(12837..13088)
                     /locus_tag="PXE26_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594117.1"
                     /translation="MDKQAILKLFRDNSTAGNSQPSQEPIQVFNNSNVIIQNGDNATV
                     IAGCTVDNNTNLTCADKQRVHDLIHSLEQRNRASRDEGA"
     gene            complement(13100..>13563)
                     /locus_tag="PXE26_001547"
     CDS             complement(13100..>13563)
                     /locus_tag="PXE26_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5594118.1"
                     /translation="VIGFGNRIEQSRKNAKLSRSEVCDALGGIAISTLQAWEADTREP
                     PISKLMALSQILNVEPCYLLTGERHSQSLNVTREPQPVYATKPQTEEGEVVVIKAKLQ
                     EAIETLEEVLEITQREMKPAGKAQMVWAFYELLTQEKSEKEKMVGLLKLVA"
BASE COUNT         3841 a         2643 c         3104 g         3975 t
ORIGIN      
        1 ttttgtgatc gctgtcacag tttttaaaat aaaaataatt tactatttgc acatctcata
       61 acagagatga aagaaaaata ttttattttg aaaaacggag atcggtatga ttgaagcaat
      121 tacacacgga gcagaatggt ttatcggcct gttccaaaaa ggcggtgaaa ccttagtcgg
      181 tatgataaac ggtattttgc cactcttaat ttcattattg gttgtaatga atgccctgat
      241 taaatttgta gggcaagatc ggattgaacg acttgctcaa cgtagtgccg gaaaccctat
      301 ttcacgttat ttgatcttac cggtgatcgg cactttcgtt ttctgtaacc cgatgacatt
      361 aagcttaggg cgtttcttac cggagcgtta caaaccaagc tactacgccg cagcctctta
      421 tagttgccac tctatgaacg gcttattccc tcacatcaac ccgggtgaat tattcgttta
      481 tttaggtatt gccagcggtt taaccacctt aggcttacca cttgggcctt tagccatcag
      541 ttatttatta gtcggtatgt ttaccaattt cttccgtggc tggataacag acttcaccac
      601 tgcattcttt gaaaaacgaa tggggatcac cttagataga gaagtacatt tatcccacta
      661 accaagtaac tgaaatacag aggaatagat tatgagcaac aaagcgattt acattgaaaa
      721 aggcaacggt ggttggggtg gtccattaac attacctgtt gtggaaggca aaaaagtgct
      781 ttatatgacc ggcggcactc gccctgcgat tgttaataaa ttggtggaat taaccggctg
      841 ggaagcggtt gatggtttta aagaaggcga accgccggca gaagaaatcg ggattgcgat
      901 tattgattgc ggtggggtat tacgctgtgg gctttaccca aaacgccgta ttccaaccat
      961 taacattcac tccaccggta aatccggccc tttagcagaa tttattgtgg aagatattta
     1021 tgtttcagcg gtgaaagaaa acaatattcg cttaattgat gccgatggaa gtgtgcctgt
     1081 ggcaacagag caagcaaaac caacttcatc aacgacagca acggcaaaag agtatgactc
     1141 cagcaaaaaa atcaccgaac aaagtgatgg tttattagca aaaatcggta tgggaatggg
     1201 atcggtggcg gcgttattct tccaagccgg acgagacact attgatacgg tgcttaaaac
     1261 cattttaccg tttatggcat ttgtttctgc gttaatcggg atcatcattg cgtcaggttt
     1321 aggtgatgtg attgcccacg gcttgacccc tctggcaaac agcccaatcg gtttagttac
     1381 actggcgttg atttgttcct tccctctcct ttccccattc ttagggccgg gagccgtgat
     1441 tgcacaagtt atcggcgtgt tagtcggtac gcaaatcggt ttaggcaata ttccgccaca
     1501 tttagcactg ccggcactct ttgctattaa tgctcaagcc gcttgtgatt ttattcctgt
     1561 gggtctttca atggcggaag caaaacaaga taccgtacgg gtgggtgtac cgtcagtatt
     1621 agtcagccgt tttttaaccg gtgcaccgac cgtgctgatt gcgtgggcag tttccgcatt
     1681 catctaccaa taattaacca cgatacaagc ggtggaattt gaaaaatttt ttgcaaaatg
     1741 caccgcttgt caaaacgaga gaacatttat atgacgatta tttatcaaac gacctttacc
     1801 aaaatcggga attttgctca ggaatcatta acagacgata tgttaatcac ttttaaacaa
     1861 ggcgcaccgg cagatttaca agattactgc ttcattcata atccatctga attaagtagc
     1921 cctttagaag taggcgatat cgctgaattt gatggcgtag cttatccgat tacggcagtt
     1981 ggtagcgttg catctgaaaa cttatccgcc ctcggacaca ttaccttccg ttttgacggg
     2041 gcaaatgatg cggaatttcc gggaagcgtt cacgttatcg gaacaccgcc gcaaggctta
     2101 acagagaact caaccttgat tatcaagcgt gattaatgac ggattaaaaa taatttcaaa
     2161 ttgaaaattt agaggaatac attatgaaca atgaaaaaaa agttgctatc gttgttggcg
     2221 gcggtcaaac acttggagct tttttatctg aaggcttggc agatgccggt tatcgtgtgg
     2281 tggttgctga cttaaacggc gaaaatgcac aaaaagtggc agccgacatt aatgccaaac
     2341 aaggcgaagg aaatgcgatt ggggtgcaag tcgatgcggc tgatgaacca agcgttgaag
     2401 cactagctaa agcaacagat accgtattcg ggcgtgccga tgtattggtt tacagtgcag
     2461 gcacagcgaa agcatcgcct atttgggatt tcaacttaaa cgattttgat ttgtcggtaa
     2521 aagtgaattt aaccggttat ttcttaaccg caaaacactt ctcccgctta atgattcgtg
     2581 acggtattaa agggcgtatc attcaaatta attctaaatc gggtaaagta gggagtaagt
     2641 ataattccgg ttatagtgca gcgaaatttg gtggtgttgg tttaacacaa tcgttagcat
     2701 tagacttggc agataaaggc attaccgtgc attcattaat gttaggcaat ttattgaaat
     2761 cgccgatgtt ccaatcgtta attccgcaat atgcggcaaa actcggcatt ccggaaagcg
     2821 aagtagagca agtttatatt gataaagtgc ctttaaaacg tggctgtgat tatcaagatg
     2881 tgttgaatgt cttaaaattc tatgccggcg aagaggcagc ttattgcaca ggacagtcta
     2941 ttaatattac cggtggtcag gtaatgttct aagcaaacaa gcggtcaaat ttgtcgattt
     3001 ttttacaaca atttgcaaaa aatgactaaa ataaaccgct tgttaattcg ccacaccggt
     3061 taatatgcca caggggaaag cgtattgttt tgaaatcgca ggtacgttta ggctctgtgg
     3121 ctttttatta aggagcaatg atggattcaa ttacacttct gattatattg gcaatgataa
     3181 tgtggctgtt acaagccgtt ttgggttggc ttcaaattaa agcctttaac caagccttta
     3241 tggaaatcag taagaaaggc aaagtaacgg ttgggcgtaa tagtggtcgt tttaatccta
     3301 aatcggttat tgtgttggcg tttgatgatg agaaaaaagt ggtagatagc ctttgtatga
     3361 aaggattttc cgtctttgcc agaccgcaga aattagcgtc tgtgattggt ttgtctcttg
     3421 atcaaattgt gccggaaaaa atctttccaa gcgataaacg ttcacaattt gccttaaaag
     3481 tggcgatatc ttccggatat agttgctcag atcaaaaata atgcgatttt ttatttcatt
     3541 ttgaatattt ttttagttaa aaatgagata atggagaata aatatgcaga tcaatagtgt
     3601 catctttgat atggacgggg taatgattga ttcagaaccc caatgggcag aggctcaaat
     3661 tgcagtatta gccgacttag gtattaatat caccgagcaa gattgcgaac aactcaccag
     3721 aggtaagcgg attgatgagt tgagcgacac ttggattaaa aaatttcagt tatctgtttc
     3781 caaccaagca ttaagtgaag ccattttggc acacggttgt gctgcgattg aacaacacgg
     3841 caaagcatta acgggtttat atgaattatt ggatttctta aaatctaatc agatcaagtt
     3901 agccgttgca acctcatcgc cgccggtggt gattaaagcg gtgtttgatc gcttaaaact
     3961 gtgggattat ttcccgattc gatgcagtgc aatggacgaa gaatatggca agccacaccc
     4021 tgcggtctat ttgagtgcag tgaaaaaatt aggcattgaa aaacaagagt gtattgttat
     4081 tgaggacagt gtaaccggct taattgccgc caaagccgct aatttaacta catttttggt
     4141 gaataccgat tatcaaaatg aaaaattttc aattgccgat aaaagaatgg catcgctact
     4201 agatgtcatt gaaaaattaa aacagcatta gcacagatta gctcgctcca atctttgcta
     4261 aattggagga acaatgaaac cttttgaaag aagacagcaa attttagcct atttagctca
     4321 gcacggtaga accgaagtgg acgtgctggc agactatttt aagctaactg gtgcaaccat
     4381 tcgtaaagat ttaacttcac ttgaagaaga taagaaagtc ttgcgtactt atggcagtgt
     4441 agtcttaatt gatgaagaaa ttcttgaacg ggaagagaaa atcaataaag aggacaaaga
     4501 cgataaaccg cttgcacaga aaaccggcat taatcttcaa caaaagcaag ctatcgggca
     4561 aaaagctgca gagttaatta atgagggaaa ctctattatt tttgatgcag gcagcacagt
     4621 gttacaaatg attccccatt taaaagcatt tgataacctc tctttaatga caaatagttt
     4681 aactattttc aatgagattt tgaaactcaa taaatcctat aacttactga tttccggtgg
     4741 tacatttcgt gagaaatcag cttcatttca cggttatttt gctgaatccg cttttattgg
     4801 ttcaaatttt gacatactct ttattggcac agacggacta gatttagacg ttggattaac
     4861 gactttcaat gaagtatata aagtcagttc gctaatgtgt gatgcggcaa ataaaatcgt
     4921 cttacttgcc gactccagta agtttggacg taaaagtccg aatattgtgt gtgggttaga
     4981 aaaaattcat actatcatta ccgatgaagg attatctcaa gaaatgagag aacagattaa
     5041 agcgaaaggg attgagctgt tagttgtata agggcgtaaa aatgaatcat ttagacagtg
     5101 caaaagaaac gttaaacctc tatgctcagc agattatcac gctaaaccat cgactttctg
     5161 aagaatttaa tgaggtggta aatatgatac tcgcttgtca agggcgagtg gttgttggcg
     5221 gtattggaaa atcggggctg gttggcaaaa aaatggtggc aacttttgcc tccatcggta
     5281 caccgagctt tttcttgcac ccgacagagg cttttcacgg cgatttggga atgctgaaac
     5341 cgattgatat ggtaattctg atttctaaca gtggtgaaac tgatgatgtg aataaactga
     5401 ttccaagcct gaaaaatttc ggcaataaaa ttattgcgat gacaggtaat ccttactcca
     5461 cacttgggcg aaatgccgat gtgattttaa atattggtgt agagcgtgaa gcctgcctga
     5521 ataatctagc tccaaccagc tctactttgg taacgatggc tttaggcgat gcgttagcca
     5581 ttgcgctaat gaaagcccgt gatttccgcc ctgaagattt tgcccgctac cacccgggtg
     5641 gcagtcttgg tcgtaaatta ttgaacagag tgcgagatgt gatggtgcgt aaagtgccaa
     5701 ccgccagctt agacaccacc tttaccgaat gtttatctgt gatgaacgaa gggcgtatgg
     5761 gggtggcggt aattatgcaa gacgataaat tggaaggcat tattaccgat ggtgatatcc
     5821 gccgcacatt agcgaaattc ggggcggaga gcctaaataa aaccgctgac gaaattatga
     5881 cccgtaatcc aaaaaccatt aacgataccg aatttttagc caaagccgaa gatttaatga
     5941 aagagctgaa aattcactca ttaattgcag tgaatgatga gggtaaagta acgggattga
     6001 tggagttctc tagttaattt atagatgtaa cgatggcgca agcgtttacg cttgtgccgt
     6061 tcactgacat atatcaatat ctaataaaac aggtaagttg ttagcataat ttcttgcact
     6121 gctatatttc cattcaaatg cctcgcatac aaaaccgctt acgatagggt tgttgtgaat
     6181 atggtttagc ttttcatcaa aaaatttctg agaatagatt gttatcggtt ggttatgatg
     6241 ttgccaaagt tggtattgct tgacattatt tcgttgttta gctgcccgag taaacatcca
     6301 taataaccat tcttttctac tttcttgggg atttgtttta atttgctgaa tcaacattta
     6361 gatgtaaatg ttttaaaatc tcttattaaa tctgacgggt tttggtcttt tgcttgaaat
     6421 aataaatgaa tatggcttgg cataatgcag tagccatata aaatcatccc tttttgtttt
     6481 cgacaataat tcaatgattg gataatggtt tgaaaataat cttctcgaat aaatagatca
     6541 atccaataaa ctgttgcaaa actaacaaaa taggctccgc tcttctcata aaacttatat
     6601 tttctactca ttatgaacct ctaaagtgca gtttatgctg atagtaatat aggtgaacag
     6661 ttagggttag caattcattt tattttttcg atgtagatcg caaaaataga attatgcttg
     6721 gcacaagcga ggacgcttac gccatcttta ctccaaaaat gtgagataga tcacattttc
     6781 aaatctgccc aaaaaaattt aatgtgatct acttcacatt tctgagagaa acatttttgt
     6841 aacttttgaa agtggtgcta atttaagcac gattttttca accctaattt tctctccttt
     6901 tttgaggttt ctatgtctaa tttaaaagtg aaagtccaag gttttgggcg tttcttatcg
     6961 aatatggtga tgccgaatat cggtgccttt attgcgtggg gctttatcac cgccctgttt
     7021 attccaaccg gttggttgcc gaacgagact tttgctaaac tggtcggtcc gatgattact
     7081 tacttgctgc cactgttaat cggttacagc ggtggtaaat tagtcggtgg tgagcgtggt
     7141 gcggttgtag gtgcgattac tacaatgggt attatcgtgg gttctgaaat cccgatgttc
     7201 ttaggtgcga tgattgtagg tccattaggc ggctgggcga tcaaaacctt cgataaagcg
     7261 attgacggca aagtaaaaag cggttttgag atgttggtaa acaacttctc ggtcgggatc
     7321 atcggtatga ttttggcaat gctttcattt gctttcattg gaggtatcgt cacccaaatc
     7381 tctgcggcat taggtgcagg tgtgggggcg ttggttgaag ctggtcttct gccagtaacc
     7441 tctatcatcg ttgaaccggc gaaaatccta ttcttaaaca atgcgatcaa tcacggtgtg
     7501 ttcacgccat tgggtacagc acaagcacaa gaagtgggca aatctattct gttcttgatt
     7561 gaagcgaacc cgggtccggg ctttggtatc ttgcttgcct atatgttctt tggtcgtggc
     7621 acagcaaaac aaaccgctgg tagtgcgtca atcattcact tcttaggcgg tattcacgaa
     7681 atttatttcc cgtatgtgtt aatgagccca cgcttaattc ttgcagtgat tgcaggcggt
     7741 gcaaccggcg ttttaaccaa ctcattatta ggtggcggtt taatcgcacc ggcttccccg
     7801 ggttctattt ttgcgatttt agcaatgacc gcaccgggtg ctcactttgc agttgttgcc
     7861 tccgtgattc tttcttgtgc cgtgactttt gcgattgcgt caatcttact caaaacccaa
     7921 aaaggtgaag cctcattgga agatgcacaa gcacaaactc aagcgatgaa agcagaaagc
     7981 aaaggcgtag taaatggtaa catcaacaaa atctatgtag cgtgtgatgc cggtatgggt
     8041 tcaagtgcga tgggtgcgag tatgttacgc aaaaaagtgc aagcggcagg tttaaacatt
     8101 gaagtacaaa acttagcgat caacgactta ccgcaagacg cacaactggt gattacccac
     8161 aaagacttaa ccgctcgtgc aacacaacgt gtggcaacgg ctcaacactt atcgctcact
     8221 aacttcttag acagtgcgtt ctatgacagc ttagtggcaa aactggctaa ccaccagcca
     8281 caacaagcgg tgcaaaatac acaaaatttt gcaaacccgg tggaagaacc tcaagccgaa
     8341 gggttaaaat tgcaagcagc ccaagtcttt ttaggcttac aagctaacag taaagaagaa
     8401 gcgatccgct ttgccggtga gcagttagtt aaagcgggct ttgttcaacc aagctatgta
     8461 gatgcaatgt tcgcccgtga gcaaatggtt tcaacttact taggcgaagg cttagctgtg
     8521 ccacacggta catctgatgc caaagacagc gtactgaaaa ccggtatcgt ggtctgccaa
     8581 tacccgaacg gcgttcgctt caccgatgaa gaagacggcg tggcgaaact ggtggtcggt
     8641 attgcagcaa aaggcaacga ccatatccaa attttaagtg caattaccaa cgcactggac
     8701 gatgaacaag caatgaaaac actgacctca acaaatgacg tggaaaaagt gttagcatta
     8761 ttatctaaat aatcaccctg ttgtgtaggg gcgggtcctg tgcccgccca ttatcctaca
     8821 aaatttaggg cgggcacagg acccgcccct acgttttata gaggaacaat catcaatgaa
     8881 cgcactccat tttggtgccg gtaatatcgg gcgtggcttt atcggcaaat tgcttgctga
     8941 tgctcgcatt ttcgtgactt ttgccgatat taaccaaact caaatcgacc aaatcaacca
     9001 aaacaagcaa tacggcgtga aaatcgtggg cgatgacagc cgtgtggaaa ttgtcaaaaa
     9061 cattgcggca attaactcga aagacgaaaa tgccgtgatt gagcaagtga aaaacaccga
     9121 tttaattacc accgcagtcg gcccgaatgt gcttggcttt attgccccac tgttcgccaa
     9181 agcgttagtg gctcgtgtgg aaagtggcaa cacccaaccg ctgaacatta tcgcctgtga
     9241 aaatatggtg cgtggcacaa ctttctttaa aggtaaaatt tttgagcatt taactgccga
     9301 gcagcaagca gaaattgaaa aagtggttgg ttttgttgat agtgcggtgg acagaattgt
     9361 accacctgcc gagccgaacc ctgctgatcc gttggaagtc acggtggaag agttcagcga
     9421 gtggattgtg gatcaaaccc agttcaaagg tgacattcca aacatcaaag gaatggaatt
     9481 aaccgataac ctgatggcgt ttgtggaacg caaactgttc accctgaaca ccgggcattt
     9541 aatctgtgcc tacttgggca aacaagcggg cgtgaaatgg attaaagagg cgattgcgat
     9601 tgaggaaatc aaaactcagg tgaaagccac aatggaagag agcggtgctg tgctgattaa
     9661 acgttacggc ttcgacccac aagcccattc agcgtatatc gaaaaaatcc tcaaacgttt
     9721 tgccaacccg tacttaaacg atgacgtaaa ccgtgtaggg cgtgagccaa tccgcaaact
     9781 gagcgaaaac gaccgcttga tcaaaccgtt gcgtggcacg ttggaatatg gcttaccgta
     9841 tcaaaacttg gtcaaaggcg tggtgatggc attgcaatat cgcaatgagg aagacccaca
     9901 agcggtcgaa cttgccgaat ttattgcaaa tcacggtgtg gcggcagcgg tggaaaaata
     9961 caccggttta accgaccaag cggtcattgc tcaagtggtg gaattatatc aataattctt
    10021 gacactatga tggattacat cgacaaactc agtgaggaaa ccaccctgcg tggtttcctt
    10081 agcattgcca atcaacgctt tgccaaagcg gttgaacagt tgattgaacg agtgtttcgc
    10141 aaaacggact ttgcgttaaa atccgtggtg gattccttgt ttgaacatca aggaccgctg
    10201 gctgacattg aagtacgttt aaaagtgttg cttgggttgg gggtgatctc acctaaagtg
    10261 tttgaagata tctcgctttt ccttgaagtc aaacagcatt tgaatgagga agaagacgag
    10321 ttcgcatttt ctcacccggc ggtagtgaaa tttgccaaag atttgcacca tattgatttt
    10381 ttgcctatca atgaattgct gaatatgaaa gcgagtgcag cgaataaaga ttcgatgctc
    10441 tttcaaatgc agcaaatgcg gttggaaaaa atggtacgtt caagcctgat tttggcggta
    10501 actgaaattg acgaacaact gaatgtggaa agcccattgt aaaaatttcg tcaaaactaa
    10561 ccgcttgtac tgagcattca cgccgtacgt gattgctttt tcctttcttt ttgatcttat
    10621 cggctttttt ctttgcttaa agcggtgtaa tctatcccta actattttgg aggatatggt
    10681 tatgcaatcg ttgctctctt ttgtgccgga ttttcttaag caagaactgt tttgggtaat
    10741 ggcgttattg gtatttgcga tttggcaatt tatccaaaac aagttgcgta tggacgtggt
    10801 tgccttaatt gtaatgctgt tttttagcct gactaatatt ttatcagtca aagaagtgtt
    10861 ggcaggctta agtgacccaa acgtggtgct gattgcgttg ctctttattg tcggagaagg
    10921 tttggtgcga accggcgtgg cgaaccaagt cagcgattgg ttgatgcggg tgtcgggagc
    10981 gagcgaaacc aaagtgctgg tgctgctaat gctctgtatt gccgggcttg gatcttttat
    11041 gagttccacc ggcattgtgg cgattttcat tccggtggtg cttgccattt gctcgggaat
    11101 gggaatttct cctcgccggt taatgatgcc gttaagtgtt gccggactta tcagcggtat
    11161 gatgacctta attgccacac cacccaacct tgttgctcat tccgaattag taaaatcagg
    11221 ttttgaaggc ttcaatttct tcagttttac tccgattgga ttaattattt tagtgatggg
    11281 catcggctat atgctgattg cccgccgttg gttggataat ggtgagcaaa gcaatactca
    11341 cagtcaggct caaaaatttt caatgtcgca gttaattgaa gagtatcaac ttaaagagcg
    11401 agccaaaatg gtgctggtgg aagcagattc agactgtgtc ggcaaatcta tcgggcaact
    11461 gaatttacgg attgagcaag ggctaaacat cattgcaatt caacgcacta agcggtttag
    11521 aaaaattacc gtcagtgcct cggtaaacga aattttccag ccgaaagata ttttactgct
    11581 tgatactgcc ctcgatgatg aaacttacca acaacgctgt gaacagctca aacttcgccc
    11641 gattgagcta aaaggcgaat acttttcctc acaatatcgc tcggtgggta tggcggaaat
    11701 ttcggttatg cctgaagcag aatgtatcgg taaaactatt cgggaactca aattccgctc
    11761 aagataccat ttaagcattg tcggcttaaa acgtggtgat gaaatcatac aagaggaact
    11821 gctcgatacg ccactcaaat tcggcgatat tttattggtg atgggcgtat ggcaacaaat
    11881 tcaccgtatg gacgacgatc atcgagattt cttcttgctt agagatccgg cagaaagtaa
    11941 aaacgcccct ccggcgttaa gccaagcccc tcacgctctg ttctcagtgc tgactatggt
    12001 gttgctgatg attaccggca ttgtgccaaa cgtgatggca gcgttgattg cctgcttaat
    12061 gttaggcaag ttccgctgtg tggatatgaa aagtgcttat gattcgattc atatgccaag
    12121 cattgtgttg attgtgggga tgatgccgtt ttctattgcc ttacaaaaaa ccggtggtgt
    12181 ggatttaacc gttaggcttc tacttgatgc aatgcaaggc ttagatgtac attttgttct
    12241 aatagtatta tttgtagtaa cagcgattat cagtgctttt atttccaaca cagcgactgc
    12301 aattttggtt atgccgatag ccattgcgat tgctaaccaa cttggctact caccggcacc
    12361 ttttgtgatg acggtcgctg tttcagcctc cgccgctttt atgacgccgg tttcttcacc
    12421 ggtaaatacg atggtattag caccggcagg ctataaattt attgatttcg ttaaagttgg
    12481 tgtgccgttt actgtactgg tgatgctggt gtcggtgttt gtgattccga tgttatttcc
    12541 gctctaaaca ctcctctaaa ttacaagcgg tcatttttgg taatctgacg ttgacggtaa
    12601 aattgttgag tatgtctggc aacatagtgt ggggtactga tcttttttgc atagagagaa
    12661 agaaaaaaat ttgggcggaa aaataacggc gaggctagga aatacaaggc ttcgccgttt
    12721 ttgtttgggg tgagttatgc aaaaaacgaa aatgagcaaa aatagaaaaa aatgggctat
    12781 ttttacgtta ttttttgcat aggtctgagc aggtttaaac ggattttaaa acaattttaa
    12841 gcgccctcat ctcggctggc tcggttgcgt tgctctaagc tgtgaatgag gtcgtgtaca
    12901 cgttgtttat cggcacaggt taggttggtg ttattatcca ccgtgcagcc ggcaatcacc
    12961 gtggcgttat cgccgttttg aatgatgacg ttgctgttat taaacacctg tataggctct
    13021 tggcttggct ggctgttgcc ggcagtgcta ttgtctctga ataatttgag aatggcttgt
    13081 ttgtccatat tgtcccctgt tatgccacca gtttgagtaa tcccaccatt ttttcttttt
    13141 cgcttttttc ttgcgtgaga agctcgtaga aagcccacac catttgggct tttccggcag
    13201 gcttcatttc ccgttgggta atttccagca cctcttccaa cgtttctatt gcctcttgta
    13261 acttagcttt gataacaact acttcccctt cttctgtctg cggttttgtg gcatacacag
    13321 gctgtggctc tcttgtgaca ttaaggcttt gcgagtgtcg ctcacctgtt aataggtagc
    13381 aaggctcaac gttaagtatt tgtgacaaag ccataagttt tgatatagga ggttctcttg
    13441 tatcagcctc ccacgcttgt aatgtagata ttgcaatacc tcctagggca tcacaaacct
    13501 cagatctact taattttgca ttttttctgc tctgttctat tcggttaccg aaaccaataa
    13561 cct
//
LOCUS       DANLZD010000075        13463 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.075, whole genome shotgun sequence.
ACCESSION   DANLZD010000075 DANLZD010000000
VERSION     DANLZD010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13463)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13463)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13463
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.075"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            3..797
                     /locus_tag="PXE26_001548"
     CDS             3..797
                     /locus_tag="PXE26_001548"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HDL5594119.1"
                     /translation="MRLIPLETDHDVSVWAARYIVDRINAFQPTKEKPFVLGLPTGGT
                     PEKTYKELIKLYQAGEVSFKNVVTFNMDEYVGLPKEHPESYHSFMFKHFFDHVDIPLE
                     NINILNGMAEDVNAECERYEEKIRFYGKIHLFMGGVGVDGHIAFNEPASSLSSRTRIK
                     TLTEDTRIANSRFFNNDVSQVPKFALTVGVGTLLDAEEVMILVTGHNKALALQACVEG
                     AVNHLWTISCLQLHRRGIVVCDEPATQELKVKTVKYFKELEKNVAR"
     gene            878..2020
                     /gene="nagA"
                     /locus_tag="PXE26_001549"
     CDS             878..2020
                     /gene="nagA"
                     /locus_tag="PXE26_001549"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HDL5594120.1"
                     /translation="MNHYALTNCVIYTGEQVLYQHALVVKEDKIDSIVLEENLPLDLQ
                     KIDLKGANLSAGFIDLQLNGCGGVMFNEEITTRTLEIMQETNLRSGTTSYLPTFITSP
                     DEGVKQAVAVMREYLSKHKNQALGLHLEGPYLSVAKKGVHRPEFIREISPEMLDFLCD
                     NGDVITKITIAAENPTADHIKRFNDAGIIVSIGHSNATFAQTKQRIAEGAAFATHLHN
                     AMSPVSNGREGGVVGAVLDSDIYTGIICDGLHVEWGNIRIAKKAKGDKLVIVSDAVAA
                     AGSDIESFIFVGKKVTVKDGKCYDEFGALGGAAITMIESIRNVVQHCDISLNEAIRMS
                     TLYPAKAIGVEETLGSLEAGKIANLAIFDNQFEVKATAVNGQLQWH"
     gene            2102..2416
                     /locus_tag="PXE26_001550"
     CDS             2102..2416
                     /locus_tag="PXE26_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2322 family protein"
                     /protein_id="HDL5594121.1"
                     /translation="MQFKDYLATFPTIDHLAGLNVINSGEVIQHIPAIEGKLGSLKLY
                     NALFAKFDGKLTASAAKQGLEWFAEHVEDAKNNVGKHPNIDLLFRVIEQDLSLSLEPI
                     VK"
     gene            complement(2495..3685)
                     /locus_tag="PXE26_001551"
     CDS             complement(2495..3685)
                     /locus_tag="PXE26_001551"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HDL5594122.1"
                     /translation="MTQAIESVLAELKRGVENIYSEEDLITKLKENRPLRIKLGADPT
                     APDIHLGHTVVLNKLRQFQQFGHEVYFLIGDFTGMVGDPSGKNSTRPPLSREDVLRNA
                     ETYKEQIFKILDPQKTKIVFNSEWLGKLGTEGMIRLASNYTVARMLEREDFKNRFTNQ
                     QPIAIHEFIYPLLQGHDSVELKADVELGGTDQTFNLLVGRELQKSAGQKPQVAMTLPL
                     LVGLDGEKKMSKSLGNYIGVTEAPSEMFGKIMSISDDLMWDWYNLLSFRPLDEIAQLK
                     ADVENGKNPRDVKILLAKEIIARFHDEAAADAAEQEFINRFQKGAIPDEVPEFTFEGE
                     IGLAALLKEAGLVPSTSEAIRSAQQGGVKIDGEKVEDVKQTAQKGTFVYQVGKRKFAR
                     ITVK"
     gene            complement(4048..5352)
                     /locus_tag="PXE26_001552"
     CDS             complement(4048..5352)
                     /locus_tag="PXE26_001552"
                     /EC_number="7.2.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium ion-translocating decarboxylase subunit
                     beta"
                     /protein_id="HDL5594123.1"
                     /translation="MESIIALFKGMGLMHLELGQAIMIVISLVLLWLAIARKFEPLLL
                     LPIGFGGLMSNIPEAGMAMTALDNLLHSGSAEQLAIIAAKVNSTSLDLHSIKDAIALA
                     APSVQNELEVMAGDMGYTAGVLALFYKVAIGYGVAPLIIFMGVGAMTDFGPLLANPRM
                     LMLGAAAQFGIFATVLGALGLNWLGIIDFTLPQAAAIGIIGGADGPTAIYLASKLAPE
                     LLGAIAVAAYSYMALVPLIQPPIMKALTTEQERKIRMVQLRNVSNREKIIFPIVLLLL
                     VALLLPDAAPLLGMFCFGNLLRTSGVVERLNDTAQNALINIVTIFLGLSVGAKLVADK
                     FLQPQTLGILVLGVIAFGIGTASGVIMAKIMNRFSQHKINPLIGSAGVSAVPMAARVS
                     NKVGQEYDKQNFLLMHAMGPNVAGVIGSAIAAGVMLKYISTM"
     gene            complement(5362..7188)
                     /gene="oadA"
                     /locus_tag="PXE26_001553"
     CDS             complement(5362..7188)
                     /gene="oadA"
                     /locus_tag="PXE26_001553"
                     /EC_number="7.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-extruding oxaloacetate decarboxylase
                     subunit alpha"
                     /protein_id="HDL5594124.1"
                     /translation="MTTQPKKIAITDVVLRDAHQSLFATRLRLDDMLPIASELDNIGY
                     WSLETWGGATFDSCIRFLGEDPWVRLRELKKAMPKTPMQMLLRGQNLLGYRHYADDVV
                     DKFVERSVANGMSVFRVFDALNDPRNMQAALQAVKKHGGHAQGTLSYTTSPVHTLQTW
                     LDVTEQLLEIGVDSLVIKDMSGILTPMAAYELVSEIKKRYDVELHLHCHSTTGMAEMA
                     LLKAIEAGVDGVDTSISSMSGTYGHPATESIVATLQGTPYETGLSIPALEKISAYFRN
                     VRKKYAKFEGQLRGIDSRILVAQVPGGMLTNLESQLKQQNASDKLDLVLQEIPRVRED
                     LGNIPLVTPTSQIVGTQAVMNVLMGERYKTIAKETAGILKGEYGRTPAPVNKALQDRV
                     LEGAEPITDRPADHLPPELEKLVAEVTASAKEKGITLSENMIDDVLIVALFQQVGWKY
                     LENRNNPSAFEPVPSADEAKPAQASAASAPKAQTQSGSAIYTVELEGKAFVVKVSEGG
                     DITNIAPTPATPAPQAVDSAPKSANTLSANAEPVNAPMAGNILKVEVKEGQQVAEGDV
                     LLILEAMKMETQICAAKSGTIQGINVKQGDVVAVNDTLMSIA"
     gene            complement(7228..7482)
                     /locus_tag="PXE26_001554"
     CDS             complement(7228..7482)
                     /locus_tag="PXE26_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxaloacetate decarboxylase subunit gamma"
                     /protein_id="HDL5594125.1"
                     /translation="MAPAELFAEGINLMVAGMGFVMLFLLVLIYAISFISKIINQYFP
                     EPVSIPASKTVPQSPPDDLERLRPVIAAAIAHHRRINGQH"
     gene            complement(7672..8859)
                     /locus_tag="PXE26_001555"
     CDS             complement(7672..8859)
                     /locus_tag="PXE26_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDL5594126.1"
                     /translation="MSNNNRSALLGAAFLMATSAIGPGFLTQTATFTQTLLASFGFVI
                     LLSILLDIGAQLNIWRIVAVSEKKAQDIANAVLPGAGYFLALLIVMGGLAFNIGNVGG
                     AGLGLNILTGLSPEMGAVVSGAIAVGVFLFHEAGKVMDRFAQIMGFVMIALTIFVAVK
                     ANLPIDDAVVHTFVPEKLDVIAIVTLVGGTVGGYITFAGAHRLLDAGIKGKENLKEVS
                     KSSVSAILIASIMRVVLFLAVLGVVSMGVQLDPKNPAATPFAHVAGDVGLMIFGVVIW
                     AASITSVIGAAYTSVSFITSFSPFIEKHKNCFIVAFIVVSTAVLATIGRPAQVLVFVG
                     TLNGLILPISLGLILLAAHKTKIVGDYKHPVWMTVSGAIVVILMAVLSAMTLSKYISG
                     LMA"
     gene            complement(9134..9871)
                     /gene="pxpA"
                     /locus_tag="PXE26_001556"
     CDS             complement(9134..9871)
                     /gene="pxpA"
                     /locus_tag="PXE26_001556"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HDL5594127.1"
                     /translation="MNHVDLNVDLAEGCGNDHSLLQLVTSANVCCGLHAGDYNEMRKA
                     INWAKENSVRVGAHPSFPDRENFGRTNMQLPDDELKACLLYQLGAAKALCDAENMPMS
                     YVKPHGALYNMAAKDPHLATLIANTVKQFDPNLKLMGLSGSLMLSIAEQHGLETISEV
                     FADRHYLADGSLVPRTRDDAMVESDDEAISQVLQMVLDGTVPTVDGGNVAIKADSICL
                     HGDGEHAVVFAERIKKELQAKGILVKA"
     gene            complement(9858..10787)
                     /locus_tag="PXE26_001557"
     CDS             complement(9858..10787)
                     /locus_tag="PXE26_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HDL5594128.1"
                     /translation="MIYIEIIQGFAHIQDLGRYGYRHLGVSHGGAMDSLALQAGNLLL
                     KNANNAPAIELTLGGMRITFDCDTPFCLTGALVEAELDGTPVFSYYRYTANARQTLTI
                     KRIVLGNYAYLCVAGGFLVPQVLGSASTALKAQFGGFQGRMLKAGDNIATGRRDSRLS
                     LMSIEPIDFTSRIRATASSEYEAFTADSRERFWQQGWQLQNNSNRMGYRFAEKALELT
                     ASLEMLSYAAPSGTVQVPPDGQPIVLMADAQTTGGYPKIACIIQADLGRLAQNPFGST
                     VQFEQVSREQAVEIYQKDQNYLETIRRKANESR"
     gene            complement(10784..11431)
                     /gene="pxpB"
                     /locus_tag="PXE26_001558"
     CDS             complement(10784..11431)
                     /gene="pxpB"
                     /locus_tag="PXE26_001558"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HDL5594129.1"
                     /translation="MLTIHHTSEHSLLCLAEPPAELAKQQQIWRVAEQARALDGVLEV
                     VVGMNNFTLFHAIGTDSTRLIQAVQQLWENDQAQAAQSPRLIEIPVHYGGEFGEDLFE
                     VAQFHNTTPEEIIRRHTEPTYTVFMIGFQPGFPYLNGLPQNLHTPRRNVPRTKVPAGS
                     VGIGGRQTGIYPFTSPGGWQLLGRTELPLFDIQHNPPTLLTAGDNVRFVAESITL"
     gene            complement(11525..12349)
                     /locus_tag="PXE26_001559"
     CDS             complement(11525..12349)
                     /locus_tag="PXE26_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HDL5594130.1"
                     /translation="MKKLLLFLLFIGNPIFAKSPELMLVEQYQDQDISGWVMSEKLDG
                     VRGFWDGQQLISRQGYPLNPPDYFIQDFPPFAIDGELFSERGKFEEISSIVRSAQPKG
                     WHKLKLQVFDVPNAQGNLIERLATLENYLKQHPTLHIAIIEQIPIKDKAHLQQFYQSV
                     LEQGGEGVIVRNPNAGYIQGRSAQILKIKPVLDEECTVVAHHKGKGKYTDKLGAITCE
                     NQRGRFRIGSGFKDKERENPPPIGSIITYKYRGVTESGKPRFATFWRIRNDQISEN"
     gene            complement(12483..13307)
                     /locus_tag="PXE26_001560"
     CDS             complement(12483..13307)
                     /locus_tag="PXE26_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594131.1"
                     /translation="MEHFIGLGVAGNFAGHLEQAGEEADFAKVKTVEAVQPKAIFPFY
                     VPAENLGDYQFLSTYPLSNTAINFPSDADNLQIEPEVALICEIGYQDQQVVSLTPTHF
                     AAYNDCSIRRPNANKICEKKNWGASSKGLSAIHLPLDNFNKGGTLDNYNIACFHKRNG
                     ELNTYGIDSPAVEYSYFHQKLLDWIVERMNNQPDEGPMNNISEMLKQANYPTKAIISI
                     GATRYTPFGESNLLQVGDVSMVVVYNVKKYSHSQIEEMAKLETFSEDISALIQTVR"
BASE COUNT         3672 a         2994 c         3025 g         3772 t
ORIGIN      
        1 ctatgcgttt aattccgtta gaaactgatc acgatgtgag tgtttgggct gctcgttata
       61 ttgttgatcg tatcaatgca ttccaaccaa ccaaagaaaa accttttgtg cttggcttac
      121 caaccggcgg tacgcctgaa aaaacctata aagaattaat taaattatat caagctggtg
      181 aagtgagctt taaaaatgtg gtgactttca atatggacga atacgtcggc ttacctaagg
      241 aacaccctga aagctaccac agttttatgt tcaagcactt ttttgaccac gttgatattc
      301 cgcttgagaa tatcaatatc ctcaacggta tggcggaaga cgtgaatgca gaatgcgaac
      361 gttatgaaga aaaaatccgt ttttatggta aaatccatct gtttatgggc ggggtcggtg
      421 tggatgggca tattgcgttt aatgagcctg catcttcgct ttcttcccgc actcgaatta
      481 aaacgcttac cgaagatact cgcattgcaa actcacgttt ctttaacaat gacgtaagcc
      541 aagtgccgaa atttgcttta accgttgggg ttggtacgtt gcttgatgcc gaagaagtga
      601 tgatcttagt gaccggccat aacaaagcct tagcattaca ggcgtgtgtg gaaggggcgg
      661 taaatcatct ttggaccatc agttgcttac aattacatcg ccgtggtata gtggtgtgtg
      721 atgagccggc aacccaagag ctgaaagtta aaacagttaa gtatttcaaa gagttagaga
      781 aaaacgtagc tcgctaattc tgattttaca agcggttaat tttgtaatat tttttacaaa
      841 aacgaccgcc tgttagcatt taaagagaag agagaaaatg aaccattatg ccttaacaaa
      901 ctgtgtgatt tacaccggtg aacaagtgct ttaccaacac gcattagtgg tgaaagaaga
      961 taaaatcgac tccattgttt tggaagaaaa tttaccgctg gatctgcaaa aaatcgacct
     1021 aaaaggagcg aatctttcag ccggttttat tgacttgcaa ctgaacggct gcggtggggt
     1081 gatgtttaat gaagaaatca ctacccgcac tttagaaatt atgcaggaaa ccaatctgcg
     1141 ttcaggcaca accagctatt taccgacttt tattacctcg cctgatgagg gagtgaaaca
     1201 agcggtggcg gtaatgcgtg agtatttgtc gaaacacaaa aaccaagcac tcggcttgca
     1261 tttggaagga ccttatctaa gtgtggcaaa gaaaggagta caccgtccgg aatttatccg
     1321 tgaaatcagc cctgaaatgt tagatttctt atgcgataac ggcgatgtaa ttacgaaaat
     1381 cacgattgca gcagaaaacc cgaccgcaga ccatatcaaa cgctttaatg atgcaggaat
     1441 tattgtatct atcgggcatt ccaatgccac ttttgctcaa accaaacagc gaattgccga
     1501 aggggcagcg tttgctacgc atttacacaa tgcaatgtcg ccggtcagca acgggcgtga
     1561 aggcggtgta gtaggggcgg tgttggatag cgatatttac accggcatta tttgcgatgg
     1621 cttgcacgtt gaatggggca acattcgcat tgccaaaaaa gccaaaggcg ataaattagt
     1681 gattgtcagc gatgctgttg ctgccgcagg aagtgatatt gagtcgttta tttttgtcgg
     1741 taaaaaagtc acggtgaaag atggcaaatg ctacgatgaa ttcggagcat tgggcggtgc
     1801 ggcaatcacg atgatcgaat ccattcgcaa cgtagtgcaa cattgcgata ttagcctgaa
     1861 tgaagcaatc cgaatgagta ccctttaccc ggcaaaagcg attggggtag aggaaacact
     1921 cggctcactt gaagccggca aaattgccaa ccttgcgatt ttcgataatc aatttgaagt
     1981 aaaagcgact gctgtaaacg ggcaattaca gtggcattaa ttttgctaca aattctaagc
     2041 ataacagcat ataatccaaa ggcaggcatt gtgtctgcct tttatttata gggagaataa
     2101 catgcaattt aaagattact tagccacttt tccaactatt gatcatctag ccggcttaaa
     2161 cgtgataaat agcggtgaag tgattcaaca tattcctgcg attgaaggta aattaggttc
     2221 actaaaactt tacaatgcac tgtttgcgaa atttgatggg aaattaaccg ctagtgcagc
     2281 aaaacaaggg ttggaatggt ttgccgaaca cgttgaagat gcgaaaaata atgtgggtaa
     2341 gcacccgaat attgatctat tatttagggt aattgagcaa gatttatctt taagtttaga
     2401 gccgattgtt aaataagatt gcactagtga aaaataacaa gcggtcatta tctgcaaaat
     2461 ttttgcaaat aatgactgct tgtgtttaag aggcttattt cacggtaatg cgtgcaaatt
     2521 tgcgtttgcc gacttggtaa acaaaagtgc ctttttgagc agtttgtttc acatcttcca
     2581 ctttttcacc atcaatttta accccgcctt gttgggctga gcgaattgcc tctgaagtgg
     2641 acggtactaa gccggcttct ttcagtagag ccgctaggcc gatttcaccc tcaaaggtaa
     2701 attcaggcac ttcatcagga attgcccctt tttggaaacg gttgataaac tcttgctctg
     2761 ctgcatctgc tgccgcttca tcgtggaaac gagcgataat ttcttttgcc agtagaattt
     2821 tcacatcacg cgggtttttg ccattttcaa catccgcttt taattgtgca atttcgtcta
     2881 atggacggaa tgagagcagg ttgtaccaat cccacattaa atcgtctgaa atcgacataa
     2941 ttttgccgaa catttcgctt ggagcttcag ttacaccaat gtagttgccg agagatttcg
     3001 acattttttt ctcgccgtct aagccgacaa gtagtgggag tgtcattgcc acttgtggtt
     3061 tttgaccggc tgatttttgt aactcacgtc caactaacaa gttaaaggtt tggtctgtac
     3121 cacctaattc cacgtcagct ttcagttcta ccgagtcgtg accttgtagt agcggataaa
     3181 taaattcgtg gattgcgatc ggttgttggt tcgtgaaacg gtttttgaaa tcttcacgtt
     3241 ctaacattcg agcaacggtg tagttggagg ctaagcggat cataccttcc gtacctaact
     3301 tgcctaacca ttcggagttg aatacgatct tggttttttg tggatctaaa attttgaaga
     3361 tctgctcttt ataggtttcg gcattgcgta acacgtcttc acggctaagt ggcggacggg
     3421 tagagttttt tcctgatgga tcgcctacca taccggtgaa atcaccgatt aagaaataga
     3481 cttcgtgtcc gaattgttgg aattgacgaa gtttgttcag cacaacagta tgacctaagt
     3541 gaatatccgg tgcagttggg tctgccccta atttaatacg caatgggcgg ttttctttta
     3601 atttggtgat taaatcttct tctgaataaa tattttccac gccacgttta agttcggcaa
     3661 ggactgattc gatagcttga gtcatttatc ttccttttag tcttgaatat aaaaaatgga
     3721 tctattatag cggtatgaat tgaaattgat aggctatagg cgaaaaaaaa cgccgtattt
     3781 tgtgggggaa tacggcgtaa agagttggag tgattaccta ttatttttga agtgatttaa
     3841 tgataatgat tatcatctgt taagtcaata ctttttttga aaattttcaa taagaattat
     3901 tctcatcaat taagtaagat ggatactacg gcaattagtg aagaatgtac agcggaattt
     3961 tcgtattgta agagtgttgg taagcggtat ttttagaaaa aacctccgag agcggttatt
     4021 tttcggaggt tttttgcaaa tgaggattta catcgttgaa atgtatttca acatcacccc
     4081 cgctgcaatc gcagagccaa tcacgccggc aacgtttggg cccattgcgt gcattaacaa
     4141 gaagttttgt ttatcgtact cttgtccgac tttgtttgat acccgtgcag ccatcggcac
     4201 ggcagaaaca cccgctgagc cgataagtgg gttgattttg tgctgactaa agcggttcat
     4261 tattttcgcc ataatcacac cgcttgcagt gccgatccca aaggcaatca cgcccaatac
     4321 taaaatgcct agtgtttgcg gttgtaagaa tttgtctgcg accaattttg cccccaccga
     4381 taaccctaag aaaatcgtca cgatattgat taacgcattt tgggcggtgt cgtttaagcg
     4441 ttctactacg ccactggttc gcagtaagtt gccaaagcag aacattccca ataacggtgc
     4501 agcatccggc agtaagagtg ccactaataa tagcaacacg atagggaaaa taattttctc
     4561 acggttgctt acattacgga gctgaaccat tcggatttta cgttcttgct cggtggttaa
     4621 ggctttcata atcggcggct gaatcagtgg cactaacgcc atataagaat aagccgctac
     4681 cgcaatcgca cctaataatt caggggcaag tttgctggca agataaatcg cggtcgggcc
     4741 atctgccccg ccgataatcc caatcgcagc ggcttgtggc aatgtgaagt cgataatgcc
     4801 taaccagttt agccctaatg cacccagtac ggtagcaaaa atcccaaatt gagccgcagc
     4861 cccaagcatt aacattcgag ggttggcaag taaagggccg aaatcagtca tcgccccgac
     4921 acccataaag ataataagcg gagcaacgcc gtagccgata gcaactttat agaataatgc
     4981 caacacaccg gcggtatagc ccatatcgcc agccattact tcaagctcat tttgaacaga
     5041 gggagcagcc agtgcgatgg catctttaat cgaatgcaga tcaaggcttg tactatttac
     5101 cttagcagca ataattgcca gttgctcggc agaaccgctg tggagtaaat tgtctaatgc
     5161 cgtcattgcc atacctgctt ccggaatgtt tgacatcaaa ccaccaaagc caataggcag
     5221 tagtaaaagc ggttcgaatt ttcgggcgat ggcaagccaa agcaacacta aactgatgac
     5281 aatcataatc gcttgcccca gttctaaatg cattagcccc atacctttaa aaagtgcaat
     5341 aatactttcc ataccggact cctaggcaat actcattaaa gtatcattta ccgccacaac
     5401 atcgccttgt ttgacattaa tgccttgaat cgtgccggat tttgccgcac aaatttgggt
     5461 ttccattttc attgcttcaa gaatcagtaa cacatcgcct tcagcaactt gttgcccctc
     5521 tttcacttcc actttcaaaa tgttccctgc cattggagca ttcaccggtt cggcattggc
     5581 tgatagcgta tttgcagatt ttggtgcaga atcgaccgct tgcggagccg gtgttgctgg
     5641 tgttggagcg atattggtta tatcgccacc ttcactcacc ttcaccacaa aggctttgcc
     5701 ttcaagctca acggtataaa tggctgaacc ggattgtgtt tgggcttttg gtgcagaagc
     5761 agcggaggct tgtgccggtt ttgcttcatc agcacttggc actggctcaa aggcagacgg
     5821 attattgcgg ttttccaaat atttccagcc cacttgttgg aagagtgcca caatcaatac
     5881 atcatcaatc atgttttcag atagcgtaat gcctttttct tttgcacttg cagtcacttc
     5941 tgccactaat ttttccagtt ccggcggaag atgatcggct gggcggtcgg taatcggctc
     6001 tgctccctca agcactctgt cttgcaaggc tttgtttacc ggtgccggtg tgcgaccata
     6061 ttcgcctttt aaaatacctg cagtttcttt ggcgatagtt ttataacgtt cgcccattaa
     6121 tacgttcatc accgcttgtg tgccgacaat ttgtgaggtt ggtgtcacca acggaatatt
     6181 gcctaaatct tcacgcacac gaggaatttc ttgtaaaacc aagtctaatt tatccgacgc
     6241 attttgttgc ttgagttggc tttcgaggtt ggtcagcatg ccacccggca cttgggcaac
     6301 caaaatacgg ctatctatac cacggagctg tccttcaaat tttgcatatt ttttacgcac
     6361 gttacggaag taggcagaga ttttctccag agctggaatg ctcaagccgg tttcatacgg
     6421 cgtgccttga agtgtggcga caatagactc ggttgccggg tgaccgtaag tgccggacat
     6481 tgatgaaatg gaggtatcga caccatcgac accggcttca atcgctttga gcaacgccat
     6541 ttcagccata ccggtggttg aatggcaatg gagatgtagc tcaacgtcgt agcgtttttt
     6601 aatttcgctg actaattcat aggctgccat tggggttaaa atgcccgaca tatctttgat
     6661 caccaacgaa tccacgccaa tttccaataa ttgctcggtt acatccaacc acgtttgtag
     6721 ggtatgaaca gggctggtgg tgtaactcaa agtaccttgt gcgtgcccgc cgtgtttttt
     6781 gaccgcttgt aatgcggctt gcatattgcg agggtcgttg agggcatcaa atacacggaa
     6841 cacactcata ccgtttgcca ccgaacgctc gacaaattta tctaccacat cgtcggcata
     6901 atgacgataa cccaataagt tttgcccacg tagcagcatt tgcattgggg ttttcggcat
     6961 tgcttttttc agctcacgta aacgcaccca cggatcttcg cctaaaaaac gaatacaact
     7021 gtcaaaagtt gccccgcccc aagtttctaa cgaccaatag ccgatattat ccagctcgga
     7081 ggcaatcggt aacatatcgt ctaagcgtaa acgagtcgca aaaagggatt ggtgtgcatc
     7141 acgcaaaacc acatcggtaa tcgcaatttt tttcggttga gttgtcataa tcaaattcct
     7201 tctaattatt ttatttttga aatcttgtta atgttgcccg ttaattcgac gatgatgagc
     7261 aatcgcagcg gcaatcacag ggcgtaaacg ctctaaatca tctgggggag attgaggcac
     7321 agttttagag gctggaatag aaacaggttc ggggaaatat tgattgataa tcttggaaat
     7381 aaagctgatg gcataaatta aaaccagcag gaacagcata acaaatccca ttccggctac
     7441 cattaaattt ataccttccg caaagagttc tgcaggtgcc ataatttatc cttaaaatgt
     7501 agaaatgatg aagaaaatgt agaaaaaatt cagatttatt tcaaattatt tagcctcaaa
     7561 atgagtggta gatcacaaac tttaaacgca agcggtcaga ttttacaaat tttttacaag
     7621 agtagttaaa atttgcaaaa cctgacctta ggttagcttg aagctaagtc gttatgccat
     7681 tagccccgaa atatattttg aaagggtcat tgcacttagc accgccatta gaatcaccac
     7741 aatcgcccct gaaacggtca tccacacagg gtgtttgtag tcgcccacaa tcttggtttt
     7801 gtgagctgcc agcagaatta acccgaggga aatcggtaga attaagccgt taagcgtccc
     7861 tacaaacacc aagacttgtg ccggtctgcc gatggttgcc agcacggcgg ttgaaaccac
     7921 aataaaggcg acaatgaaac agtttttgtg tttttcgata aatggcgaga atgaagtaat
     7981 gaaggaaacc gaggtataag ccgccccaat cacagaggta atggaggctg cccaaatcac
     8041 cacgccgaag atcatcaaac cgacatcgcc ggcaacgtgg gcaaatgggg tagccgcagg
     8101 gtttttcgga tcaagttgca cgcccattga caccacgccc agcaccgcta aaaacagtac
     8161 cacacgcata attgaggcga ttaaaatggc tgacaccgag cttttgctca cctcttttaa
     8221 attctctttg cctttaatgc ctgcatcaag caaacggtgc gcaccagcaa aggtgatgta
     8281 tccaccaaca gttccgccca ctagcgtgac aatcgcaatc acgtctaatt tttccggcac
     8341 aaaggtatgc accaccgcat cgtcgattgg cagattggct tttacggcaa cgaagatggt
     8401 taaagcaatc atcacaaagc ccataatttg tgcaaatctg tccatcactt taccagcttc
     8461 atggaacagg aacacgccca cggcaatcgc accgctgacc accgcaccca tttcagggga
     8521 aagtccggtg agaatgttta gccctaaacc tgcaccgccc acgttgccga tattaaaggc
     8581 taaaccgccc atcacgataa gcagagccag aaagtaacct gcccccggca atacggcatt
     8641 ggcgatgtct tgagctttct tttccgatac tgctacaatt cgccaaatat tcagttgagc
     8701 accgatatca agcaagatcg agagtaagat cacaaagccg aagctggcaa gtagggtttg
     8761 ggtgaaggtg gctgtttggg ttaagaaccc cggcccgatg gcggaggtcg ccattaaaaa
     8821 tgctgccccg agtagggcgc tacggttgtt gtttgacatt gtgttggttc cttttttgtt
     8881 gttaatgagt cattattcgt ggatttatca tggtaatatt cccctcttta gcaaagaggg
     8941 gttaggggag atttggcagt agaactcatc gaagtgagag agttaataat gctcaattta
     9001 acctcttgaa attacttatt ttctccgtaa atcgcttctg tcaaatctcc cccagcccct
     9061 cttttctaaa gaggggagtt cgatctccaa gagttttatt tctggttttc cgtccatttt
     9121 gactaaaaca ggatcaggct ttcaccaaaa tcccctttgc ctgtaactct tttttaattc
     9181 gctcggcaaa taccacggcg tgttcgccgt caccgtgtaa gcaaatgctg tcggctttaa
     9241 tcgccacatt accaccatca acggttggta cagtgccgtc taacaccatt tgcaagactt
     9301 ggctgatcgc ttcatcatcg ctttctacca ttgcatcatc acgggtgcga ggcacgagcg
     9361 agccgtcagc taaatagtgg cggtcggcaa agacttcgga aatggtttcc aaaccgtgct
     9421 gctcggcaat gctcaacatc aggctgccgg ataagcccat cagtttgagg ttgggatcga
     9481 actgtttgac cgtattggcg ataagggtgg caaggtgagg gtctttggcg gccatattgt
     9541 ataaagcgcc gtgcggttta acgtagctca tcggcatatt ttccgcatca cataaggctt
     9601 tggcggctcc cagttggtag agcagacagg ctttaagttc atcatcgggc agttgcatat
     9661 tggtacgccc aaagttttcc ctatctggaa aactcgggtg agcgccaact cgcacgctgt
     9721 tttccttcgc ccagttaatc gctttacgca tttcattgta atcaccggcg tgcaagccac
     9781 agcagacatt cgccgaagta acgagctgta ataatgaatg atcgttgcca caaccttcgg
     9841 caagatcgac atttaaatca acgtgattca ttcgcttttc tccgaattgt ttccaaataa
     9901 ttttgatctt tttgataaat ttcgaccgct tgttcacggc ttacttgctc aaattgcacc
     9961 gttgagccga acggattttg tgccaaccgc ccgagatcgg cctgaataat gcaggcaatt
    10021 ttcggataac caccggtggt ttgggcatct gccatcagca caatcggctg gccgtccggc
    10081 ggcacttgca ccgtaccact cggggctgcg taggagagca tttcaaggga agcggtcaat
    10141 tccaacgctt tttctgcaaa acggtagccc atacggttgc tgttgttttg cagttgccac
    10201 ccttgttgcc aaaagcgttc acggctatct gcggtaaagg cttcatattc gctcgaagcg
    10261 gttgcccgaa tgcgtgaggt gaaatcaatc ggctcaatcg acatcaaaga aagtcggctg
    10321 tctctgcggc ctgtggcgat gttatcgccg gcttttaaca ttctgccttg aaaaccgcca
    10381 aattgagctt tgagagcggt acttgccgaa cctaacacct gcggcaccag aaaaccgcct
    10441 gccacgcata aataggcgta attgccgaga acaatccgtt ttatcgtcag cgtttgacgg
    10501 gcgttggcag tgtagcggta ataggaaaaa accggcgtgc cgtccagctc cgcctccacc
    10561 aatgcaccgg tgaggcaaaa tggcgtgtcg caatcaaagg taatccgcat tccgccaagg
    10621 gtaagttcaa tcgcaggtgc attatttgca ttttttaaca ataaattacc cgcttgtaag
    10681 gcaaggctgt ccatcgcacc gccgtggctc acgcctaaat ggcgataacc ataacgccct
    10741 aaatcttgaa tgtgggcaaa accctgtatt atttcgatat aaatcatagc gttatactct
    10801 ccgccacaaa tctaacatta tcgccggctg taagtagcgt tggcggattg tgttgaatat
    10861 caaacaacgg taactcggtt cgtcctaaca gttgccagcc acctggtgag gtaaagggat
    10921 aaatgcctgt ttgcctgccg ccgatgccga ccgaaccggc agggactttg gtgcgaggca
    10981 cgtttcggcg tggggtgtgt aaattttgcg gtaagccgtt gaggtaagga aagccgggtt
    11041 gaaagccgat cataaacacg gtgtaagtcg gttcggtatg acggcggata atctcttcgg
    11101 gagtggtatt gtggaattgg gcgacttcaa acagatcttc gccaaattca ccgccgtaat
    11161 ggacagggat ttcaatcagg cgtggggatt gtgcggcttg ggcttggtcg ttttcccaga
    11221 gttgttgaac cgcttggata aggcgtgtgc tatcggtgcc aatggcgtga aatagggtaa
    11281 aattgttcat tcctaccacc acttccaaca cgccatctaa ggctcttgcc tgttctgcca
    11341 cccgccaaat ctgttgctgt ttggcaagct ctgcaggcgg ttcggctaag cagagcaggg
    11401 aatgttcgct ggtatgatga atcgtcagca taattgccct caaattgtta caaaaaggta
    11461 acaacttttt acgctgatat atccagactg tcaattttat tttgttgaaa atgtgaaata
    11521 gctcttaatt ttcagaaatt tgatcatttc ttattcgcca aaacgttgca aatctgggct
    11581 tgcctgattc tgtgacacct cgatatttat aggtaatgat tgagccaatc ggtggcggat
    11641 tttctcgttc tttatcttta aaaccgctgc caatccgaaa acgtccacgt tgattttcac
    11701 aagtgattgc cccgagttta tcggtatatt tccctttgcc tttatgatgg gcaaccacag
    11761 tgcattcctc atctaaaacc ggtttgattt tcaaaatttg ggcagaacga ccttgaatat
    11821 agcctgcatt cgggttgcga acgataaccc cttcgccacc ttgttccagc acagattggt
    11881 aaaattgttg aaggtgggct ttatctttaa tcggaatttg ctcaataata gcgatatgga
    11941 gcgttggatg ttgcttcaga taattctcta aggtcgccag ccgttcaatc aaattccctt
    12001 gtgcatttgg cacatcgaac acctgtaatt tcagcttgtg ccaacctttg ggctgagcgg
    12061 aacgcacaat gcttgaaatt tcctcaaatt tgccccgttc gctaaacagt tcgccgtcaa
    12121 tcgcaaaagg agggaaatct tgaataaaat agtcgggtgg attgagcgga taaccttggc
    12181 ggctgatgag ctgttgaccg tcccaaaagc ctcgcacgcc atcgagtttt tctgacatta
    12241 cccagccact gatgtcttga tcttgatatt gctcaacgag cattaactcg ggcgatttgg
    12301 caaaaatagg gttaccaatg aagagtagga ataagagcag ttttttcata gtctctccga
    12361 aatagtgcct ccgaatatgc aaggcactat aaaggaaagc gtgcaaacag tcagaaatga
    12421 atctcaattt ttcgacgcag atcgcaaaat tttccgaaaa actgatcgct tgagtgagaa
    12481 atttaacgta ctgtttgaat taaagcagaa atatcctcgc taaaggtttc caacttcgcc
    12541 atttcttcaa tttggctatg agaatatttc ttcacattgt aaacgaccac catacttaca
    12601 tcacctactt gcaataaatt actttcgcca aaaggcgtgt agcgtgttgc cccaatgctg
    12661 ataatcgctt tagttgggta gtttgcctgt tttaacattt cggaaatgtt gttcatcgga
    12721 ccttcatcgg gctgattatt cattctctct acaatccaat cgagcaattt ttgatggaaa
    12781 tagctgtact ccaccgcagg gctgtcgatg ccgtaggtat tcagctcgcc attacgttta
    12841 tggaaacaag cgatgttgta attatccagc gtgccgcctt tgttgaagtt atctaacgga
    12901 agatgaattg ccgaaagccc tttagacgaa gccccccagt ttttcttttc acagatttta
    12961 ttcgcattcg gacggcggat agagcagtca ttgtaagccg caaaatgggt tggcgtgagc
    13021 gaaaccactt gctgatcttg gtagccaatt tcacaaatta acgccacttc aggctcaatt
    13081 tgcagattat cagcatcact cgggaaatta atcgcagtat ttgaaagcgg ataggtggat
    13141 aaaaactgat aatcccccaa attttccgcc ggcacataaa acgggaaaat cgcctttggc
    13201 tgcactgctt ccactgtttt cactttcgca aaatccgcct cctctccggc ttgttctaaa
    13261 tgtccagcaa aattgccggc cacgcctaaa ccgataaagt gttccataat ctactcctta
    13321 attggtaaaa gttggataaa attttaccgc ttgtaaccaa aaattgcgaa tgtttatttt
    13381 gatctgattg atagaaaatt attgaattga gattaaattt agccatattt tgaacataaa
    13441 attagcgctt tgttataaaa aca
//
LOCUS       DANLZD010000076        12953 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.076, whole genome shotgun sequence.
ACCESSION   DANLZD010000076 DANLZD010000000
VERSION     DANLZD010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12953)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12953)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12953
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.076"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            78..1223
                     /gene="lldD"
                     /locus_tag="PXE26_001561"
     CDS             78..1223
                     /gene="lldD"
                     /locus_tag="PXE26_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent L-lactate dehydrogenase LldD"
                     /protein_id="HDL5594132.1"
                     /translation="MIISSANDYRRAAKRRVPPFMFHYADGGSYAEQTLRRNVSDLED
                     IALRQRVLKDMSQLDTGIELFGEKLSMPVTLAPVGALGMYARRGEVQAAKAADNKGIP
                     FTLSTVSICPIEEVAPAIKRPMWFQLYVLKDRGFMKNALERAKAAGCSTLVFTVDMPT
                     PGARYRDMHSGMSGPYKDIRRVLQAMVHPFWAWDVGIHGKPHTLGNVSNYMGKPIDLN
                     NYIGWLTDNFDPSISWKDLEWIREFWDGPMVIKGILDPEDAKDAVRFGADGIIVSNHG
                     GRQLDGVLSSAKALPSIADAVKGEIKILADSGIRNGLDVVRMLALGADCTMIGRSFVY
                     ALSAAGQAGVENLLDIFLKEMKVAMTLTSNAKISDIGRDALVDLSNL"
     gene            complement(1277..1546)
                     /locus_tag="PXE26_001562"
     CDS             complement(1277..1546)
                     /locus_tag="PXE26_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594133.1"
                     /translation="MLSEERFGFFYIFIFIYFSLLSLSIGYIRPELRTTYDYLEIENK
                     RYYVLSIHRNNIYVLGEKTKDNDEFLFFNQDTLKYYRINITKMPN"
     gene            complement(1621..2007)
                     /locus_tag="PXE26_001563"
     CDS             complement(1621..2007)
                     /locus_tag="PXE26_001563"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594134.1"
                     /translation="MTNQKFINSSLTLAFFTLISFSTAYCYAWGIAAFHGYPWWHVEV
                     GNAGIARALAYVFGTFLTIFLFYLIGYALVNKVFKLHYFKYLGWLRVSVLVTIFSLPV
                     MISFYLFIGKVPMYLHLLYLGTTTSI"
     gene            complement(2260..3090)
                     /gene="fghA"
                     /locus_tag="PXE26_001564"
     CDS             complement(2260..3090)
                     /gene="fghA"
                     /locus_tag="PXE26_001564"
                     /EC_number="3.1.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HDL5594135.1"
                     /translation="MQQFENYRCFSGEQQVWQHFSASLNCEMKFAIYLPQSAKTQKLP
                     VLYWLSGLTCTEQNFITKSGFQRYADEHHLIVVAPDTSPRGVNVANDEAYDLGQGAGF
                     YLNATQGEWTTHYQMYDYIVSELPTLINAHFPTNGKQSIFGHSMGGHGALTIAFKNPG
                     QYQSVSAFAPIVAPTQVPWGQKAFLAYLGEDQTAWKAYDSVALLEKYRPSLPILIDQG
                     SQDSFLSDQLKPEIFCETADRLGIPYQFNLRDGYDHSYYFISSFIGEHIAFHAKHLKD
                     "
     gene            complement(3170..4228)
                     /locus_tag="PXE26_001565"
     CDS             complement(3170..4228)
                     /locus_tag="PXE26_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HDL5594136.1"
                     /translation="MAYPIKSYATFSATTPLAPHSFERRELLEDDVLIDILYCGVCHS
                     DLHMARNDWGWTQSYPLVPGHEIIGRIIKVGKNAKKFQIGDLVGVGCMVDSCRECSPC
                     QHGLEQYCEVGNIGTYGGIDRFDGTPTQGGYSTCVVVSEDFVLKVSENLDTKAVAPLL
                     CAGITTYSPLRHWNVKAGSKVAVVGLGGLGHMAVKLAKAMGAEVTLFTRSLGKADDAY
                     RLGASRVVLSTDEKQMADVANTFDLIIDTVPYTHDLKPYIPTLALDGTLVLVGLVGEL
                     EQTINTVPMILGRRSISASVIGGIQETQEMLDFCAEHNIVPDVEMIDMQNINDAYERM
                     LKSDVKYRFVIDMGSLKG"
     gene            complement(4415..5350)
                     /locus_tag="PXE26_001566"
     CDS             complement(4415..5350)
                     /locus_tag="PXE26_001566"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03571 family LLM class oxidoreductase"
                     /protein_id="HDL5594137.1"
                     /translation="MNTLSPIFSQVFGQNQLTLGLIAPFMGYQNHIPDNLTTIADNAR
                     LAENLGFSALWVRDVPFYDPHFGDVGQGLDPMVTLGFLSAHTQNIALGTAGLIAPLRS
                     PIHIAKMATSVDSLSHGRFLLGLSSGDRPVEYPAFGADFASRSERFRESIDLINTLTE
                     QDFPHFKGKHYADLTDNLDLLPKPKHRLPIVAIGRARQEMDWLANVPDAWIWHGVNPA
                     DTANIINTLADLRQKDTPTAFGYAQFVEVLDDKNAKAQLFNNIYLRGGAKGLADFWAK
                     EQEKGVKHLALNLKPTQRPADEVLTELAEYALTQF"
     gene            complement(5630..5941)
                     /locus_tag="PXE26_001567"
     CDS             complement(5630..5941)
                     /locus_tag="PXE26_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5594138.1"
                     /translation="MSETEKQAINAPNAVMNGYLTMHYPDWFKPDGIYFNDGAFESFE
                     SSHKLTKDGKIRLVPTAGHTLGHLAVVVDMGEHYILIGGDASYSEQDMLAGNIDGVCN
                     A"
     gene            complement(5948..6340)
                     /locus_tag="PXE26_001568"
     CDS             complement(5948..6340)
                     /locus_tag="PXE26_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5594139.1"
                     /translation="MIKVHCLTTGWVQIKIHHQVARFFARPARVLDVLTDKKWSPKLP
                     IGCWLIEHDDGLILVDTGESSRANDKGYQPWWHPFMQFCERRGVKKHEEVGEILKANG
                     FDPLRIDTVVMTHMHGDHAGGLPNFPNS"
     gene            6472..7032
                     /locus_tag="PXE26_001569"
     CDS             6472..7032
                     /locus_tag="PXE26_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HDL5594140.1"
                     /translation="MNDLRVIKTHLAIQNALIELLDEKLFEKVQVQEIIEKALINRTT
                     FYRYYSGESDLVGKLIKEVKAEYQDLLKKRFESGNLLRFMQTIGNRLLEKRRLILALW
                     QIKTPRHHLYDDMHMLLKNAFIAHAKRITSDDKNWAEKNWDYQAHIFATIALESHKYY
                     FEQGKLLPIPQVFEEWIEMVQVLKSV"
     gene            complement(7098..8087)
                     /locus_tag="PXE26_001570"
     CDS             complement(7098..8087)
                     /locus_tag="PXE26_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HDL5594141.1"
                     /translation="MSKQIQFTKTGSPDVLQIVDVAIPAPKAHEVQIQIQAIGLNRAE
                     MMYREGAYVIDPVFPATLGYEGAGVIVAIGEGVNEVAISDKVSIIPSFMFTEYGTYGE
                     IVNMPKHAVVKHPDNLSMEQASASWMAFVTAYGGLIEFGKVQKGDFVVLGGATSSVGL
                     ASIQIAKMQGATVIALSRTHAKGDVLLEKGADFVIATSEDDVTAKLFEITNGKGVNVV
                     FDPVGRKEAAKIINAMAQDGRYIIYGALSHDDIAVPVFPILGKHLTVRGYELFEITTV
                     PEKLAQAKTFVYDGLASGQLRPEIDKIFAFDEMVKAHEYMASNQQIGKIVVKV"
     gene            complement(8301..9218)
                     /locus_tag="PXE26_001571"
     CDS             complement(8301..9218)
                     /locus_tag="PXE26_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5594142.1"
                     /translation="MTFIIGILAGVLIAFQSAINARLRMHVGAAFLTSFVSFSVGLLF
                     LLGLSLIMQQTPAFSLDNLGNVPLWAWTGGLLGMVGLTANVLIFPKLGGVQTAVMPIL
                     GQVLMGVLIDTFAWLNSPYIAFTASRLFGIGLVLFGVWIAVVLPHLSGLKRKENANLW
                     LWRAVGILGGTALATQAAVNGEFGRQPGSSLGAATVSFGVGAIGLLLVVLFYEKSLPK
                     LCQPTEGKPFWIWSGGILGSLFILAGVWLVPQIGTGSVVMLVLSGLICGSLLVDKFGL
                     FGITQKPILPLQIIGVTLLLAGVAFIRLL"
     gene            complement(9354..10013)
                     /locus_tag="PXE26_001572"
     CDS             complement(9354..10013)
                     /locus_tag="PXE26_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003672168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5594143.1"
                     /translation="MQFFNKEDVINAFHYRASTRSYDGSRKIPAEDFNYILELGRLSP
                     SSVGSEPWQFLVLQNPELRQKIKPYCWGIPTMETSSHIVVILAKKNARYDSQYFSEIM
                     DRRGLQGEAREKAMAVYKKFQEKDIGILDSERSLFDWASKQTYIALGNMMTGAALIGV
                     DSCPIEGFAYQEVNDILAAEGLFDPSEWGVSVMCTFGYRDKEIRQKARKDFETVVKFI
                     E"
     gene            complement(10198..11262)
                     /locus_tag="PXE26_001573"
     CDS             complement(10198..11262)
                     /locus_tag="PXE26_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase/NADH oxidase"
                     /protein_id="HDL5594144.1"
                     /translation="MAKFRKLFTPFNIKNLALKNRVVMPPMCQYSATNGVPNDWHFVH
                     YTSRAVGGVGLIIVEMTNVAPNGRITPNCLGLWNDEQQQAFKKLVDSVHAQGAKIGVQ
                     IAHAGRKAQDEPDAVAPSAIHYGELDYAGQNLITPRELTTDEVKALVQAFKDSVKRAV
                     EAGFDTIEIHGAHGYLIHQFYSPKSNQRSDEYGQDKMLFGEQVIQAAREVMPSEMPLI
                     VRISAQEYGENGFGLDYGLQVAKRFADAGADVLDISGGGDGVLHAGNHPEFYAGYQVD
                     FARQVKLATGKPVIAVGMLDNPAVGDHILGMGDADLVAVGRALLRDPYWVLNAQYDQN
                     AADSSEMQFVPKQYERGLFM"
     gene            11353..12261
                     /locus_tag="PXE26_001574"
     CDS             11353..12261
                     /locus_tag="PXE26_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5594145.1"
                     /translation="MSDIRTLDFNLLKAFVVLLDECNVSRAAQRLSITQPAMSGILNR
                     LRESFNDPLFVRVQHGMQPTDRALQLGQTARNILQDISSMLQPPILEPEHLNMTLRIA
                     AMDYVQQIIALPLILRLRRLAPNVKVALLPVQGQNIKTLFEQKKIDLALVSRQHLSTD
                     TLKTVLYEERYVCAMSKTHPMAQTPLSLDQFCNLPFAMLSYNGGEFSGATDLALQKIG
                     LQRKVMVSVNHISLLPQLLQGSDLVAVLPERLAKTLPNVYLQPPPIEVEGFTMMMAWH
                     ERTEQDTAHRWLREVLQGVVKPKQAL"
     gene            complement(12331..12882)
                     /locus_tag="PXE26_001575"
     CDS             complement(12331..12882)
                     /locus_tag="PXE26_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5594146.1"
                     /translation="MAKQIAVLIGSGSKTSFSHLTVRHLQKMAPASIQLNIVDIADLP
                     LYDRDLDENSPAQYTRVREAVAVADGVLLVTPEHNASFSAMLKNAIDVVSRPMGQSKW
                     IGKPAGIVTVGASPAGGVRAADQVRTITSGSFVNMPTLPFALNVGNLFTGVFDEQGEI
                     ASETLKSSMQNFINAYAQFVEKY"
BASE COUNT         3629 a         2911 c         2824 g         3589 t
ORIGIN      
        1 gcaaatagta gtaattctta tttttatttt aaagtagaat agccgcactt ttttcttaat
       61 gatttatgag gttttaaatg atcatttcat ctgcaaacga ttaccgccgt gcggcaaaac
      121 gtcgtgttcc cccttttatg ttccattatg cggatggcgg ttcttacgcc gagcagacct
      181 tacgtcgtaa tgtgagcgat ttggaagaca tcgccctgcg tcaacgtgtg ttaaaagata
      241 tgtcgcaact agacaccggc atcgagctgt tcggcgaaaa actgtctatg ccggtgaccc
      301 tcgcccctgt cggtgcatta ggaatgtatg cccgccgtgg cgaagtgcaa gcggccaaag
      361 ccgcagataa caaaggtatt ccgtttaccc tttccactgt ctctatttgc ccgattgaag
      421 aggttgcacc ggcaatcaaa cgcccgatgt ggtttcagct ctatgtgtta aaagatcggg
      481 gctttatgaa aaatgcattg gaacgagcca aagccgccgg ttgttccacg ctagtgttta
      541 ccgtagatat gccgaccccc ggcgcacgtt atcgtgatat gcactccgga atgagcggcc
      601 catacaaaga cattcgccgt gtgttgcagg caatggttca cccgttttgg gcgtgggacg
      661 tgggcattca cggtaaaccc cacacgttag gcaatgtgtc aaactatatg ggtaaaccga
      721 ttgatctgaa caactacatc ggctggctga ccgataattt cgacccatca atttcgtgga
      781 aagatttaga gtggattcgt gaattttggg acggcccgat ggtgatcaaa ggcattctcg
      841 acccagaaga tgctaaagat gccgtaagat ttggtgcgga cggtatcatc gtctccaacc
      901 acggtggtcg tcagttagat ggggtacttt cttctgccaa agccctgcca agcattgccg
      961 atgcagtaaa aggggagatc aaaatccttg ccgactctgg tatccgcaac ggcttagatg
     1021 tggtgagaat gctggctctc ggcgcagatt gtacgatgat cgggcgttcc tttgtttacg
     1081 ctcttagcgc cgccggtcaa gccggtgtgg aaaacctgct cgacatcttc cttaaagaaa
     1141 tgaaagtggc gatgacactt accagcaatg ctaaaattag cgacatcggc agagatgctt
     1201 tggtagattt aagtaatctt tagctcaaat agccacaatc cgcacgtttt aggtgcggat
     1261 tgttatttta gataggctaa tttggcattt tggtaatatt aatgcggtaa tatttcaatg
     1321 tatcttggtt gaaaaagaga aattcatcgt tatctttagt tttttcgccc agcacataaa
     1381 tgttattgcg atgaatagat aagacataat atcgcttatt ttcaatttca agataatcat
     1441 acgttgttct cagctcaggg cgaatgtagc caatactcaa agaaagtaag ctaaaataga
     1501 tgaaaataaa aatatagaaa aaaccgaagc gttcttcgct taacattttt tgaatatcta
     1561 agtggaatac gcggtggccc caatgtttgt gaaataataa tactgatagg gtagttgtcc
     1621 ctagatagag gtagttgtcc ctagatagag taggtgtaaa tacattggca ctttgccaat
     1681 aaacagatag aaactgatca ttactggcaa gctaaaaata gtaacaagaa cactcacccg
     1741 tagccagcca aggtatttaa agtaatgcag cttaaaaact ttattaacta aagcgtatcc
     1801 tatcaaataa aaaagaaaga tagttaaaaa tgtgccaaaa acgtaggcta gtgcgcgagc
     1861 tataccggca ttaccaacct caacatgcca ccacgggtag ccatgaaaag cagcaatacc
     1921 ccaagcataa cagtaagcgg tagaaaaaga gattaaagta aagaaagcga gagtaagaga
     1981 agagttgatg aatttctgat tagtcataac agtaaataga ttgcacctac ttagttaaag
     2041 atgaaacaca agaaagcaga ctgagtttag cttccaccca actcctttgt ttagaggaga
     2101 actttattaa agcacgactt ttgttgtatt tcaaaccttt gtttttatac aaaacaaccg
     2161 tgttgtaaaa aatgatcgta aactgaccgc ttgtaatgca ctctgaatat atcgaaacat
     2221 gataaaaatg ataaagcatg tttcgataat ttactgtctt tagtctttta aatgttttgc
     2281 atgaaaggct atatgttcac cgataaagct actaatgaaa tagtagctgt gatcgtaacc
     2341 atcacgtaaa ttgaattggt agggtattcc aagtctatct gcggtttcac agaaaatttc
     2401 cggctttaac tgatcgctca aaaagctgtc ttggctgcct tgatcgatta gaattggcaa
     2461 gcttgggcga tatttttcca gcaatgccac gctatcatac gccttccaag cggtctgatc
     2521 ttcgcctaaa tatgctaaaa atgctttttg cccccaagga acttgggttg gggcgacaat
     2581 cggtgcaaat gccgatacac tttgatattg ccccggattt ttaaatgcaa tggttaaggc
     2641 accatgtccg cccattgaat gcccaaaaat tgattgttta ccgttagtcg ggaaatgagc
     2701 attaatcaat gttggcagtt cgctgacaat gtaatcatac atttggtaat gtgttgtcca
     2761 ttcgccttgc gtagcattta ggtaaaatcc ggcaccctga cctaaatcat aagcctcatc
     2821 attagcgaca ttcacacccc tagggctggt atccggtgcg accacaatca gatgatgttc
     2881 gtcggcataa cgttgaaagc cagatttagt gatgaagttc tgctcggtac aggttaaacc
     2941 agaaagccaa tatagtacgg gtagcttttg tgttttagca gattgcggca gataaatagc
     3001 aaatttcatt tcacagttta agctggctga gaaatgttgc caaacctgtt gttcaccgct
     3061 aaaacagcgg tagttttcaa attgttgcat aatattcctt acaagcggtt taattccgct
     3121 gattttttgc aaaaataaag gcggaactca ccgcctttat attgtaatat caacctttca
     3181 aacttcccat atcaatcaca aaccgatatt tcacgtctga tttcagcatt cgttcataag
     3241 catcattgat gttttgcata tcaatcattt ccacatccgg cacaatgttg tgttcggcgc
     3301 agaagtcgag catttcttga gtttcctgaa tgccgccgat gacagaggcg gaaatagagc
     3361 ggcggcctaa aatcatcggt acggtgttga tggtttgctc caactcaccg accaagccca
     3421 ccagcaccaa tgtgccgtcc aacgctaagg ttgggatata aggtttcaag tcgtgggtat
     3481 aaggcacggt atcgatgatt aaatcaaagg tatttgcaac gtctgccatt tgcttttcat
     3541 cggtagaaag caccacacgg cttgcgccca aacggtaagc atcatcggct ttacccagtg
     3601 agcgagtaaa aagcgtaact tccgctccca ttgctttggc aagtttaacc gccatatgcc
     3661 ccagtccgcc aagccccaca acagcgactt ttgagccagc tttgacattc caatgacgca
     3721 ggggcgaata ggtggtaatg cctgcacaca aaagaggggc aaccgctttg gtgtccaagt
     3781 tttcagagac ttttaataca aaatcttcac tcaccaccac gcatgtgctg taaccgcctt
     3841 gtgttggtgt gccgtcaaag cggtcaatac cgccataagt gccgatgttg cccacttcgc
     3901 agtactgctc caaaccgtgc tggcaaggac tgcattcacg gcaggaatcc accatacaac
     3961 cgacaccgac caaatcgccg atttggaatt ttttggcgtt tttaccgact ttgataatac
     4021 gaccgatgat ttcgtgccct ggtacaagcg gatagctttg cgtccagccc caatcattgc
     4081 gagccatatg caagtctgaa tggcacacgc cacagtacaa aatatcaatc aaaacatcgt
     4141 cttcaagcaa ttcacggcgt tcaaaactgt gtggggcaag tggtgtggtt gccgaaaaag
     4201 tggcgtagga tttgataggg taagccattt ttggggttta aatggctgaa atggcaatta
     4261 ctatagtgcc gatgatttat tattgaaaat caagattttt gataaatcgg tatcagttaa
     4321 aatgataatt gggggttttc agactgactg aaaaattatt ttgcccattt taaaaacaaa
     4381 aacaccgccc tcatcacaaa agcggtgttt ttcatcaaaa ttgtgtcaaa gcatactctg
     4441 ccaattctgt aagcacttca tcagcaggac gctgagtggg ttttaaattg agtgccaaat
     4501 gtttcacgcc tttttcttgt tcttttgccc aaaagtctgc caagcctttt gcaccaccac
     4561 gcagataaat gttgttaaat aactgtgctt tggcgttttt gtcgtccaaa acttccacaa
     4621 attgagcata gccaaatgct gtgggggtgt ctttttggcg taaatcggca agggtgttga
     4681 tgatgtttgc ggtgtcggca ggattcacac cgtgccaaat ccacgcatca ggtacattag
     4741 caagccagtc catttcttgc cttgctcgtc caatcgccac aatgggcaag cggtgtttgg
     4801 gtttggggag caaatccaaa ttgtctgtta aatcggcata atgtttgcct ttgaaatggg
     4861 gaaaatcctg ctcggttaag gtgttaatca aatcaatgct ttcacgaaaa cgctcgctac
     4921 gagaggcaaa atccgcccca aatgcagggt attccacagg tctatcgcca gaggataagc
     4981 ccaataaaaa ccgtccatga ctcaaactat ccacacttgt cgccattttg gcaatgtgaa
     5041 tgggactacg caaaggggca atcagccctg ccgtgccaag ggcgatgttt tgggtgtggg
     5101 cggacaaaaa accaagtgta accatcgggt caagcccttg ccccacatcg ccaaaatgag
     5161 ggtcataaaa cggcacatct cgtacccaca atgctgaaaa gcccaagttt tcagccagcc
     5221 gtgcattgtc ggcaatggtg gtcaaattgt ctggaatgtg attttgatag cccataaagg
     5281 gggcaattaa gcccagtgtt aattgatttt gcccaaaaac ttgggagaaa atgggggaaa
     5341 gcgtgttcat tttggcgtac ctgtcttatt taagataagg tattttaagg gcttttgagt
     5401 ttgcttaaaa tgggataaat tgagaaagtg ttttgctaaa ttggcataaa tagacgcttt
     5461 caagctgact gaaaatttgc aaaattttta ataaaaatga ccgcttgcct ttcaacaagc
     5521 ggtcattccc ctttaatttt ttaccaccgt aaacacctta tttttcagcc gatattcact
     5581 tttttcatcg tgagccagtt gcacaatggt tggcttgcgt ttacacaatt cacgcattgc
     5641 acacgccgtc aatgttgcca gcaagcatat cttgttcaga gtaagaggca tcgccgccaa
     5701 tcaaaatata atgctcgccc atatccacca ccaccgccaa atgccccagc gtatgtcctg
     5761 cggttggcac aaggcggatt ttgccgtctt tggtgagttt atgactgctc tcaaaacttt
     5821 caaacgcccc atcattaaaa tagatgccat caggcttaaa ccaatcagga tagtgcattg
     5881 ttaaataacc gttcatcacc gcattggggg cgttgattgc ctgtttttca gtctcactca
     5941 tcacaaatca gctgtttggg aaattgggca atccgcctgc gtggtcgccg tgcatatggg
     6001 tcattaccac cgtgtcaatg cgtaaagggt caaagccgtt tgcctttaaa atttcgccca
     6061 cttcttcgtg ttttttgacc ccacgccgtt cgcaaaactg cataaacggg tgccaccacg
     6121 gctgatagcc cttgtcgttg gcacgactgc tttcgcccgt atccaccaaa atcaaaccgt
     6181 catcgtgttc aatcagccag caaccaatcg gcagtttagg cgaccatttt ttatcggtca
     6241 gcacatcaag cacacgggca ggacgggcaa aaaagcgtgc cacttgatga tgaattttga
     6301 tttgtaccca acctgttgtc agacaatgca ctttaatcat ttttgtgttc tcattaaaaa
     6361 atcgtgggca tattgtagaa agtgcggtaa cttttcacaa acattaaaaa gttcgtattt
     6421 ggctggatat gcagataaaa ttacaaaaat gtatgcttat tttgaaaaaa gatgaacgat
     6481 ttaagagtaa tcaaaaccca tctagcaatc caaaacgctt tgattgaatt attagatgaa
     6541 aagctgtttg aaaaagtgca agtccaagaa atcattgaaa aagccttgat taaccgcacc
     6601 actttttacc gttattattc gggcgaaagt gatttggtcg gcaaattgat aaaagaggtg
     6661 aaggcggaat atcaagacct gctcaaaaag cgttttgaaa gcggtaattt gctgcgattt
     6721 atgcaaacca ttggcaaccg cttattggaa aaaagacggc tgattttggc actttggcaa
     6781 atcaaaaccc ctcgccatca tttgtatgac gatatgcaca tgctgttaaa aaacgccttt
     6841 atcgcccacg ccaaacggat aacatcagat gataaaaact gggctgagaa aaattgggat
     6901 taccaagccc atatttttgc caccattgcc cttgaaagcc ataaatatta ttttgaacaa
     6961 ggcaaacttt tgcccattcc acaggtgttt gaggagtgga tagaaatggt gcaggtgttg
     7021 aaaagtgttt agaaataact ggtaaaattt tccataaaaa acaccgcttt catcacaaaa
     7081 gcggtgcttt caaatcatca aaccttaacc acaatcttac caatctgctg attgcttgcc
     7141 atatattcgt gagctttaac catttcatca aaggcaaaga ttttgtcaat ttcagggcgt
     7201 aactgaccgc ttgccaaacc gtcatagaca aaggttttgg cttgtgccaa tttttcaggt
     7261 acggtggtaa tttcaaagag ttcatacccc cgcacggtca aatgcttacc caaaatcggg
     7321 aacactggca cagcaatatc atcatggctt aacgctccat aaatgatgta acgaccatct
     7381 tgtgccattg cattgatgat ttttgccgcc tcttttctgc ccacagggtc aaataccaca
     7441 ttgacgcctt tgccattggt gatttcaaaa agtttggcgg ttacatcgtc ttcgcttgtg
     7501 gcaatcacaa aatccgctcc tttttccaaa agtacatcgc ctttggcgtg ggtgcgagac
     7561 aaggcaatca cggttgcccc ttgcattttg gcgatttgga tactggctaa accaaccgaa
     7621 ctggttgcac cgcccagcac cacaaaatcg cctttttgta ctttgccaaa ctcaatcagt
     7681 ccgccataag cggtaacaaa cgccatccaa ctggcggacg cttgttccat tgacaaatta
     7741 tcagggtgct tgaccacagc gtgttttggc atattgacga tttcgccata agtgccgtat
     7801 tcggtaaaca taaaggacgg aataatgctc accttatcgc taatggcaac ttcgttcaca
     7861 ccctcgccaa tcgccacaat cacaccagcc ccttcataac ccaaagtcgc agggaataca
     7921 gggtcaatca catacgcccc ttcacggtac atcatttcgg cacggtttaa gccaatggct
     7981 tggatttgga tttgtacttc gtgtgctttt ggtgcaggaa ttgctacatc aacgatttgc
     8041 aagacatcag gcgaacctgt ttttgtaaat tggatttgtt tgctcattgt tttgaccttt
     8101 tgtgtaaata atgggcgtat tttaatgcaa tgaatttatt ttaaacacaa catcaattgc
     8161 aaaacacttt tgctaaattt acataaatac attttcacaa tgtctgaaaa gttgttttgc
     8221 aaattttaaa aagaaaacca ccgcttgccg atcacaagcg gtggtttttg tgggttattt
     8281 tgcaagaggt gtcagcttgg ctacagtaag cggataaatg cgacgccggc taagagtaag
     8341 gtaacgccga tgatctgcag cggtagaatg ggtttttgtg taatgccgaa cagaccgaat
     8401 ttatctacca gcaggctgcc gcaaatcagg ccagagagga cgagcatcac caccgagcct
     8461 gtgccgattt gggggacgag ccaaacgcca gcgaggataa acaggctgcc cagtatgccg
     8521 ccgctccata tccaaaacgg tttgccttcg gttggctggc agagtttcgg caggcttttt
     8581 tcataaaaca gcactaccag taataagccg atggcaccga caccgaagga gactgttgct
     8641 gcgccgagtg atgagccggg ctgtctgccg aattcgccat taacggcggc ttgggttgct
     8701 aatgcggttc cgcctaatat gccgactgcg cgccacagcc ataaatttgc gttttctttg
     8761 cgttttagac cggacagatg gggcagtacc acggcaatcc atacgccgaa taagactaaa
     8821 ccaatgccaa acaggcggct ggccgtgaag gctatgtaag gcgagttaag ccaagcgaaa
     8881 gtgtcgatca gcacgcccat cagcacttgg cctaaaatcg gcatgaccgc agtttgtacg
     8941 ccgccgagct tggggaagat cagtacgttt gccgttagcc ccaccatgcc gagtaatccg
     9001 cccgtccatg cccataaggg gacgttgcct aaattgtcga ggctaaatgc tggtgtttgt
     9061 tgcatgatga gcgagagtcc gagtagaaac aggaggccta cgctgaaaga gacaaacgag
     9121 gttaaaaatg ccgcacccac gtgcatacgc aaacgggcgt tgatggctga ttgaaatgca
     9181 atcagcacgc cggctaaaat accgataata aatgtcatga ctaactgggt tgtgctgccg
     9241 cctcaaaatg agtggtggtt gaaaagaaat gccgtctgaa tgcggattca gacggcctta
     9301 aggcttggta tcggcgttta cctgatgttg aatagccgtt ttgcctagcc ggtttattcg
     9361 atgaatttca ccacggtttc gaaatcttta cgtgcttttt ggcggatttc tttatcacgg
     9421 taaccgaagg tacacatcac cgatacgccc cattcgcttg ggtcaaataa tccttccgct
     9481 gccaaaatat cgttgacttc ttggtaagcg aaaccttcta tcggacaaga atctacgcca
     9541 attaaagctg caccggtcat catattgccc aatgcgatgt aggtttgttt gcttgcccag
     9601 tcaaacaggc tgcgttcgct gtctaaaatg ccgatatctt tctcttggaa ttttttatac
     9661 acggccatgg ctttttcgcg cgcttcgcct tgtaaacctc gtctatccat aatttcagaa
     9721 aaatattggc tgtcgtaacg ggcatttttc ttcgctaaaa tcaccacgat atggcttgag
     9781 gtttccatag ttggaatgcc ccagcagtaa ggtttgattt tttgccgtaa ttcagggttt
     9841 tgcaacacta aaaactgcca aggctctgag cctaccgaac ttggacttaa acgaccgagt
     9901 tccagaatat agttgaaatc ttcagccgga atttttctgc tgccgtcgta agaacgggta
     9961 gatgcacggt aatgaaaggc attgattacg tcttctttgt tgaaaaattg catggaacac
    10021 tcctaaaaat gcaaaacagt cttttcagac ggtctgaaaa gtctagatga aatacggata
    10081 agtataaaag atttaagtta tttttaataa ttgataattt tgatatttag gtataagttg
    10141 acgtgatgag aaaaaacaga ccctctgaat gttcaggcgg tctttaacgt tggttgttta
    10201 cataaataat ccgcgttcat attgcttcgg cacaaactgc atttcactgc tgtctgctgc
    10261 attttggtca tattgcgcat tcaataccca gtacggatcg cgcaataagg ctcttcccac
    10321 agccactaaa tccgcatcgc ccatacctaa gatatgatcg cctaccgccg gattatccaa
    10381 catacctact gcaattaccg gtttgcccgt agcgagcttc acttgacggg caaagtctac
    10441 ttggtaacct gcgtaaaatt cggggtgatt acctgcatgc aatacaccat caccaccacc
    10501 gctgatgtct aagacatctg cgcctgcatc ggcaaaacgt ttcgctacct gcaaaccata
    10561 atccaagcca aagccgtttt caccgtattc ttgtgcagaa atgcggacaa ttaacggcat
    10621 ttcagacggc atcacttcac gtgctgcctg aatcacttgc tcgccaaaca acattttgtc
    10681 ttggccgtac tcatcactgc gctgattgga tttcggcgaa tagaattggt gaattagata
    10741 accgtgtgcg ccgtggattt caattgtatc aaagcctgcc tcaacggcac gtttgaccga
    10801 atccttaaag gcttgaacca atgctttgac ttcgtctgtc gtcagctcgc gaggtgtaat
    10861 cagattttgt ccggcataat ccaactcacc gtagtgaatt gcacttggag ccactgcatc
    10921 cggctcgtct tgggctttgc gtccggcatg ggcgatttgc acaccgattt ttgccccttg
    10981 agcatgaacg ctgtctacca gttttttgaa tgcctgttgt tgttcatcgt tccataagcc
    11041 taagcagttt ggcgtaattc tgccgtttgg cgccacattg gtcatctcca caataatcaa
    11101 gccgacacca cctactgcac ggctggtgta atgcacgaaa tgccaatcgt tcggtacgcc
    11161 gttggttgcc gaatattgac acattggtgg cataaccaca cggtttttca atgctaagtt
    11221 tttaatgtta aacggggtga ataattttct gaacttcgcc atgttgcctt ccttaatgaa
    11281 atagattagg tggaatgata attcagtgct attatctatt caaattgatt attgtgatag
    11341 ttaggtataa aaatgagtga tataagaaca ctggatttca atttgctcaa agcttttgtg
    11401 gtgctgctgg acgaatgcaa cgttagccgg gcagcacaac gattatccat cacccaaccg
    11461 gcaatgagcg gtattttaaa ccgcttgcgc gagagtttta acgatccgtt atttgtgcga
    11521 gtgcaacacg gtatgcagcc aaccgaccgc gcgttgcaac tggggcaaac cgcacgcaac
    11581 attctgcaag atatcagctc catgctgcaa ccacccatat tggaaccgga acatctgaat
    11641 atgaccttgc gtattgccgc aatggattat gtacaacaaa ttattgcctt gccgctgatt
    11701 ctgcgtttaa gacggcttgc tccgaatgta aaagtcgcct tactgccggt gcaggggcaa
    11761 aatatcaaaa ctttgttcga gcaaaaaaaa atcgatcttg ccttggtcag ccgccaacat
    11821 ttaagcacgg atacgctgaa aacggtatta tatgaagaac gctacgtatg cgcgatgagc
    11881 aaaacacacc cgatggcgca aacaccgcta tcgctcgatc aattctgcaa tcttcccttc
    11941 gcaatgcttt cttacaacgg cggagaattc agcggagcta cggatctagc gttacaaaag
    12001 ataggactac agcgcaaagt aatggtctcg gtaaaccata tttccctgct gccccagctg
    12061 ctacaaggtt ccgacttagt cgcagtattg cccgaacgct tagcaaaaac cttacccaat
    12121 gtttatttac aacctccgcc tatagaggta gaaggcttca ccatgatgat ggcttggcac
    12181 gaaagaaccg aacaagatac ggcgcatcga tggttaagag aggtgctgca gggtgtggta
    12241 aaacctaaac aggctcttta attattcttt cttttgctat gaaaaaagcc gtttatattt
    12301 ttagataaac ggcttttttg cattctaata ttagtatttt tctacaaact gagcataggc
    12361 attaatgaag ttttgcattg agctttttaa tgtctcagag gcaatttcac cctgttcatc
    12421 aaatacgcct gtaaataagt ttcctacgtt taatgcgaaa ggtaaggttg gcatatttac
    12481 aaatgagcct gaagtaatag tacgtacttg atcagctgca cgtacaccgc ctgccgggct
    12541 tgcgccaacg gttacgatac ctgccggttt gccaatccat ttgctttgcc ccattgggcg
    12601 agaaaccacg tcaatcgcat ttttaagcat tgcagaaaag cttgcattat gctcaggtgt
    12661 gactaataac acgccatctg ccacagcaac cgcttcacgc actctggtgt attgtgccgg
    12721 gctgttttca tctaaatcac ggtcgtaaag tggtaagtct gcaatatcca caatgtttaa
    12781 ttgaatgctt gcaggtgcca ttttttgtaa gtgacgaaca gtcaagtgac taaatgaagt
    12841 tttgctgccg ctaccaatta atactgcaat ttgttttgcc attttataat tccttagtac
    12901 atagagaata taggcatttt atccctttca atctgtttca taaagcgctt atg
//
LOCUS       DANLZD010000077        12637 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.077, whole genome shotgun sequence.
ACCESSION   DANLZD010000077 DANLZD010000000
VERSION     DANLZD010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12637
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.077"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            1..170
                     /locus_tag="PXE26_001576"
                     /pseudo
     CDS             1..170
                     /locus_tag="PXE26_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_021111752.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            422..1612
                     /locus_tag="PXE26_001577"
     CDS             422..1612
                     /locus_tag="PXE26_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000616649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine--oxo-acid transaminase"
                     /protein_id="HDL5594147.1"
                     /translation="MSTSQQLIQQTEHFGANNYLPLPIVISKAKGIWVEDPEGNRYLD
                     MLSAYSAVNQGHCHPKIVQALKDQADKVTLTSRAFYNDQLGIWYEKICKLANKEMALP
                     MNTGAEAVETAIKTARRWGYDVKGIAENQAEIIACVGNFHGRTMAAVSLSSDPDYKRG
                     FGPMLGGIKLVPYGDLEALKAAITPNTAAFLVEPIQGESGILIPPEGFLEQAYELCKE
                     NNVLFIADEIQAGLGRTGKLFATEWEGFEPDIYILGKALGGGVFPISCVLANRDILGV
                     FNPGSHGSTFGGNPLACAVSIASIDVLLEEKLAERSRELGEYFLAELKKIQNPIIKEV
                     RGRGLFIGLELHQPARPFCEKLKEKGLLCKETHDTVIRFAPPLVIEKFNLDWALEKIR
                     EVLA"
     gene            1687..3198
                     /gene="nhaC"
                     /locus_tag="PXE26_001578"
     CDS             1687..3198
                     /gene="nhaC"
                     /locus_tag="PXE26_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDL5594148.1"
                     /translation="MLILQTFSKNQPLVKGGFMSNRTEITDQNIRIPFRYAILPVIIM
                     VSIMAVAIIKFEASPHVPLLIGAISAAVIAMAHGYRWETIEKGIYRGIRMALPAIVII
                     IMIGLTIGAWLGGGIVATMIYYGLKLISPSLFLVTISIICAIVTLAIGSSWSTMGTIG
                     VAAMGIGFSLGIPAPMVAGAVISGAYFGDKMSPLSDTTNLAAGITETNLFEHIRHMFI
                     TTVPAFLIALSVYFYFGMEFRAENLDLAKIEDIMQAMQEHFLISPWLLLVPLLVVVLV
                     AKKVPALPALAAGIILGWLCHVFVQGGDVSVAVITLHDGYKIESGHEMIDKLFNRGGI
                     ESMMYTISLTIVAMTFGGIAEQAGMLHSVVEKILTLAKSAGSLISATIVSAFITNVTT
                     SEQYISILLPGRMYIKAYRDKGLSSRNLSRALEDGGTVTSVLVPWNTCGVYAFSMLQV
                     SAFEYAPYAIMNWLIPLIAIGLATLNIKIERLPPEELAKEPEEITLPKRGCCP"
     gene            3315..6914
                     /gene="putA"
                     /locus_tag="PXE26_001579"
     CDS             3315..6914
                     /gene="putA"
                     /locus_tag="PXE26_001579"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HDL5594149.1"
                     /translation="MMSYQLLPNTTIRPELSRHYRFDEQTLVQNLIEQAHCDEQADNI
                     KKLTTQLVGKVRTARQKASGVDALMHEFSLSSQEGVALMCLAEALLRIPDTATADKLI
                     RDKIAKGDWRSHTGNSPSLFVNAAAWGLVITGKLVSTHSESSLSSALSRLIAKGGEPL
                     IRKGVDVAMRMLGKKFVTGETIQQAIKNGEKRFAMGYRYSYDMLGEAALTAEDAKRYY
                     NDYVASIHAVGATSKGLGVYKSSGVSVKLSAIHPRYSLSQHQRVMDELYPRLKELFLL
                     AKKYDIGLNIDAEEADRLELSLDLMDRLLADPDLAGFNGIGFVVQAYQKRCPYVIEHL
                     IETARKHNRQLMIRLVKGAYWDTEIKRAQMDGAEGYPVFSRKVHTDLNYIVCAKKLLA
                     AQDVIYPQFATHNAQTLATIYHLAQGKRFEFQCLHGMGESLYDQVVGSDNLNVQCRIY
                     APVGTYQTLLAYLVRRLLENGANSSFVSQIVDENLSVDDLAQAPVQKAELTNGTMHPK
                     IPLPVDLFDDNRVNSKGYDLTDAVSLQNLENALNELTKQHYRAEPQLANDNTSGQESR
                     KIYNPANQAELVGEVIDATENDMEQAFESAAAFQSEWANTSPAVRAECLEKMADLMEA
                     NMPQLFDLAVREAGKTLNNAIAEVREAVDFCRYYAKEVRNNIEAYKNPRGIVVAISPW
                     NFPLAIFVGEVSSALVAGNVVLAKPAEQTSLMAHYAVSLFYQAGVPKAALQCLPGRGK
                     TVGVALVADHRVNGVIFTGSTETAKNINRNLHKNEKIIPLIAETGGQNAMIVDSSALG
                     EQVVIDVLNSAFDSAGQRCSALRVLYLQRDVADHILTMLKGAMAELKVGLPQHLTTDV
                     GPVIDKVAQQRLLDHIENLKKSAKSYYQVAISSEIAENGIFVPPTLLEIDHISQLKHE
                     VFGPVLHVIRFDADKLDQVIADINSTGFGLTSGLHSRIDETVDLWLKSVHAGNLYVNR
                     NTVGAVVGVQPFGGMGLSGTGPKAGGPLYLQRLVNRQEWTLNGLQGNAQAVDFDLNFA
                     IRKVLSGAEQQTALDLAKSLARRSPLGKTYPMQGITGEKNEMIFVARPQIGISKGNLA
                     SQVQALIAIVTVGSQAVAEKSSELAKHASAFGKKLQVVDDFNSLDHLSTLIVLDLLSS
                     EEKLHHAERKGAILTYIEGLDLALSLLPLVHEKAISINTAAAGGNASLMSEMD"
     gene            7023..7673
                     /locus_tag="PXE26_001580"
     CDS             7023..7673
                     /locus_tag="PXE26_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISMha3 family transposase"
                     /protein_id="HDL5594150.1"
                     /translation="MRKSRLSQYKQHKLIELFVAGVIARTAAELVNVNKTTAAYYFHR
                     LRLLIYQHSPHLEMFEGEIEIDESYFGGHRKGKRGRGAAGKTAVFGLLKRDGKVYTVV
                     VPNTQSATLLPIIREKVKPDSLVYTDFYRSYDVLDVSEFNHFRINHSTHFAENQNHIN
                     GIENFWSQAKRHLRKFNGIPKAHFELYLKECEWRFNHSDLKSQIFLLKQLVKGGLG"
     gene            complement(7674..8561)
                     /locus_tag="PXE26_001581"
     CDS             complement(7674..8561)
                     /locus_tag="PXE26_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide transport protein"
                     /protein_id="HDL5594151.1"
                     /translation="MNKLTQLALISLAFTGSAFAAPKSFTYCLESSPAALNPQIATDG
                     ATLDVGQAIYNRLIDFEKGTTNLTPSLAERWEISEGGKIYTFFLRQNVQFQSNKSFTP
                     SRYFNADDVIFSINRQFDKTNPYHKLSGGNYEFFYGMNMQNIIKNVTKVDDYTVKIEL
                     SEPNAPFLANLAMDFMAIFSAEYANKMQIAGTPEKLDLEPIGTGAFQFYGYQKDAAVR
                     FTAFEHYWEGKAKIDRLVFSITPDASVRLAKLEKNECQAMPYPNPSDLSALKANKDIQ
                     LFEKSGLNIGYITFRGCPR"
     misc_feature    complement(8587..8732)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            complement(8909..9919)
                     /gene="mglC"
                     /locus_tag="PXE26_001582"
     CDS             complement(8909..9919)
                     /gene="mglC"
                     /locus_tag="PXE26_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018355241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     permease MglC"
                     /protein_id="HDL5594152.1"
                     /translation="MSALQQNRTLDFFKQNAIYFVLLILLIVIIVQDPSFLSLRNFSN
                     ILSQSSVRLIIALGVAGLIVTQGTDLSAGRQVGLAAVISATLLQSMENMNKVFPNLSE
                     IPIPVVVLTVCAIGAVIGLFNGFVVAYLNVTPFIATMGTMIIVYGINSLYYDAVGSSP
                     IAGFSDDFSTFAQGFFRFGDFRLSYITIYAVIATIIMWTLWNKTRFGKNVFAIGGNPE
                     AARVSGVNVPLNLMGIYMLSGIFYAFGGMLEAGRIGSATNNLGFMYEMDAIAACVVGG
                     VSFAGGVGTIIGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGIIILAVAIDSLKYAK
                     KK"
     gene            complement(9933..11432)
                     /gene="mglA"
                     /locus_tag="PXE26_001583"
     CDS             complement(9933..11432)
                     /gene="mglA"
                     /locus_tag="PXE26_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     ATP-binding protein MglA"
                     /protein_id="HDL5594153.1"
                     /translation="MTGEVLLTMTNVSKSFPGVKALDNANLTVKSHSVHALMGENGAG
                     KSTLLKCLFGIYAKDEGDILFLGKPVNFKTSKEALENGISMVHQELNLVKQVTVMDNL
                     WLGRYPLKGPFVDHDKMYRDTKAIFDELDIDVDPRDKVAKLSVSQMQMIEIAKAFSYN
                     AKIVIMDEPTSSLSEKEVEHLFKIIQKLKDRGCGIIYISHKMDEIFKICDEITILRDG
                     KWVNTVAIKDTSMDQVVSMMVGRELTQRFPEKTNLPKEVILEVEHLTAKNQPSIQDVS
                     FSLRRGEILGIAGLVGAKRTDIVETIFGVREKAGGTIRLNDKEINNRNAFDAINNGFA
                     LVTEERRSTGIYANLSIEFNSLISNMKSYLGKFGLLSNKKMKSDTQWVIDSMNVKTPS
                     HQTHIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDIGAKFEIYQLILELANKDK
                     GIIMISSEMPELLGVTDRILVMSNGKVAGIVETAHTSQEEILQLAAKYL"
     gene            complement(11504..12493)
                     /gene="mglB"
                     /locus_tag="PXE26_001584"
     CDS             complement(11504..12493)
                     /gene="mglB"
                     /locus_tag="PXE26_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HDL5594154.1"
                     /translation="MKKAVLSAVAMAVALGATISTAQAENRIGVTIYKYDDNFMALMR
                     KEIEKEGKTQKVELLMNDSQNTQSIQNDQVDVLLSKGVKALAINLVDPSAYKTIIQKA
                     KSEDVPVVFFNKDPGAAAIDSYPKAYYVGTEPKESGIIQGELIAKQWKAHPELDLNKD
                     GKIQFALLKGEPGHPDAEARTKYVVESLKAQGIDSEQIFMDAALWDAAQAKDKVDAWL
                     SSGKAKDIEVIISNNDGMALGALEATKAHGRKLPIFGVDALPEALQLIKKGELAGTVL
                     NDGVNQGKAVVQLSANLADGKDAVAGTQWKLENRVVRIPYVGVDKDNLSEFLK"
BASE COUNT         3654 a         2638 c         2695 g         3650 t
ORIGIN      
        1 gaattgagaa tttttggagc caagcaaaac gccatttgcg taaatttaac ggcataccta
       61 aagctcattt tgagctgtat ttgaaggaat gcgaatagcg ttttaatcac agtgacttaa
      121 aatctcaaat ttccatttta aaacaattgg ttaggggttg tttaagttag ttatctagga
      181 cagccctaaa ttttgtagtt ggaatttcaa cggagaaagt tatctataaa cttacaaaag
      241 ttatagaaaa tggaggcatt tttgcttaaa gtatgctatc tattcatatt aattgcatag
      301 ttaatcaaca actgaagaaa aattagaagt agatcataaa atcaacaaaa agtccgtgct
      361 ttttagctaa agattgttaa actcttttgt gttacaagtt tttaacataa aggagttttt
      421 tatgtctact tctcaacaac tcatccaaca aaccgaacat ttcggtgcca ataactacct
      481 acctctacct attgttatta gtaaagctaa aggcatttgg gttgaagatc ctgagggtaa
      541 tcgctatttg gatatgctta gtgcctactc agcggttaat caagggcatt gtcatccaaa
      601 aattgtacag gcactaaaag atcaagcaga caaagtaacg ctgacctctc gagcatttta
      661 taacgatcaa cttggtattt ggtatgaaaa aatctgcaaa ctcgctaata aagagatggc
      721 attaccgatg aatacgggtg cagaagcggt agaaacagcg attaaaactg ctcgccgttg
      781 gggttatgat gtgaaaggaa ttgcagaaaa tcaagcagaa atcatcgctt gtgttggcaa
      841 ttttcacgga cgaacaatgg ctgcagtatc tctctcgtct gatccggatt ataaacgtgg
      901 tttcgggccg atgttaggtg gcatcaaact tgttccatac ggtgatttag aagcattaaa
      961 agctgcgatt acaccaaaca cagcagcgtt tttggttgag ccaatccaag gtgaatctgg
     1021 cattcttatt ccacctgaag gtttcttgga acaggcttat gaactatgca aagagaataa
     1081 tgtgctgttt attgctgatg aaattcaggc aggtcttggg cgtactggca agttatttgc
     1141 aacagaatgg gaaggctttg agccagatat ttatattcta ggtaaagcac ttggtggcgg
     1201 ggtgttccca atctcttgtg tgttagcaaa tcgtgatatt ttaggcgtat tcaatcctgg
     1261 ctcgcacggt tcgacatttg gtggtaatcc attagcctgt gcggtatcta ttgcctcaat
     1321 tgatgtactg ttggaagaaa aacttgcaga gcgttcccgt gagttaggtg aatacttctt
     1381 ggcagagctg aaaaaaatcc aaaatccaat tattaaagaa gttcgtggac gtggactgtt
     1441 tattggcttg gagttacatc aaccagcacg cccattctgc gaaaaactca aagaaaaagg
     1501 cttactctgc aaagagaccc acgatacagt tatccgcttt gctccccctt tggtgattga
     1561 aaaattcaat ttggattggg cattggagaa aattcgggag gtgttggctt aattgtcatt
     1621 ttctctatat tttatcctgc caaatcgcct ttaacccttt ttggcaggaa gcaaaacagt
     1681 tgtaaaatgc tgattttgca aactttttcc aaaaatcaac cgcttgtaaa aggtggcttt
     1741 atgtcaaaca gaacagaaat aacagaccaa aatatccgaa tcccgtttcg ctatgctata
     1801 ttgcctgtga ttattatggt atcgattatg gcggtggcta tcatcaaatt tgaagcctca
     1861 cctcacgttc cgttgcttat tggggcaatt agtgccgctg tgattgcaat ggcacatggc
     1921 taccgttggg agacaattga aaaaggaatt tatagaggca ttcgtatggc tttaccagcg
     1981 attgttatca ttattatgat tgggctaacc atcggagctt ggctaggtgg tggaattgta
     2041 gctacgatga tttactacgg cttgaaattg atctctccgt cgctgttttt agtaactatc
     2101 tcaataattt gtgctattgt gacccttgcg attggtagct cgtggtctac aatgggaaca
     2161 atcggtgtag cggcgatggg gatcgggttt agtctcggca ttccggcacc gatggttgcc
     2221 ggtgcggtga tctcaggagc atatttcggc gataaaatgt cgccactgtc agacactacc
     2281 aatctggcag cagggattac cgaaaccaat ctgtttgaac atatccgcca tatgtttatc
     2341 actaccgtgc cggcgttcct gattgcgtta tctgtctatt tctattttgg tatggaattt
     2401 agagccgaaa atctcgatct tgctaaaatt gaagacatta tgcaggcaat gcaggaacat
     2461 ttcttgattt cgccttggtt gctattagtg cctttattag tcgtggtgtt ggtggcaaaa
     2521 aaagtgcctg ccttaccggc attagctgca gggataattc ttggttggct ctgccacgtt
     2581 tttgtgcaag gcggtgatgt cagcgtagca gtgattactc tgcacgacgg ctataaaatt
     2641 gagagcggcc acgagatgat tgataagctg ttcaaccgtg gtgggatcga gtcgatgatg
     2701 tacaccattt cccttacgat tgttgcgatg acttttggtg gcattgcaga gcaagctgga
     2761 atgttacatt cagtagtgga aaaaatcctt acccttgcaa aatcagcagg tagcttaatt
     2821 agtgctacga ttgtatcggc atttattacc aacgtaacga catctgagca atatatttct
     2881 attttattac caggcagaat gtatataaaa gcctataggg ataagggact aagttcgaga
     2941 aacctttctc gtgcattgga agacggagga acagttactt cggttcttgt accttggaat
     3001 acctgtggtg tttatgcgtt ctcaatgttg caagtgagtg cttttgaata tgcaccgtat
     3061 gcaataatga attggctcat tccactgatt gcgattggct tggcaacctt gaatatcaaa
     3121 attgagcgat tgccaccgga agaattagcc aaagaacctg aggaaattac tctgccaaaa
     3181 cgtggttgtt gtccataatt tatctaaata gtatttaata acaataggtt aagttaaata
     3241 acaagcggtc ggttttatct taaaatttgc aagtttatac ataaatttga tcgcttgctg
     3301 tatagaaagg aaaaatgatg tcataccaac ttttacctaa caccactatc cgtcctgaat
     3361 tgagccgtca ttaccgcttt gatgagcaaa ccctggtgca aaatctgata gaacaagcac
     3421 attgtgatga acaggctgat aacattaaaa agctcactac ccaattagtc ggtaaagtcc
     3481 gaactgcacg ccagaaagca agcggggttg atgcgttaat gcacgaattt tcactctcca
     3541 gccaagaggg ggtggcgttg atgtgccttg ccgaagcatt actacgcatt cctgacaccg
     3601 ccactgcgga taaattaatt cgagacaaaa ttgccaaagg ggattggcgt tcacacaccg
     3661 gcaacagccc ctctctgttt gtgaatgcag cggcgtgggg cttggtgatt accggcaaat
     3721 tggtttcaac ccacagcgaa agctcactct catcagcact ttcacgcctg atcgccaaag
     3781 gcggagaacc gctgatccgc aaaggtgtgg acgtagcaat gcgtatgctc ggcaagaaat
     3841 ttgtaacggg cgaaaccatt caacaggcga ttaaaaacgg cgaaaaacgc ttcgcaatgg
     3901 gttatcgtta cagctacgat atgctgggcg aagcggcact caccgccgaa gatgccaaac
     3961 gctattacaa cgactatgtt gcctctattc acgctgtggg tgccacctcg aaaggcttgg
     4021 gcgtgtataa atcctcgggt gtgtcggtca aactctccgc cattcaccct cgttattccc
     4081 tttcccaaca ccaacgtgtg atggacgaac tctatccacg tctgaaagaa ctgttcttgc
     4141 tggcgaaaaa gtatgacatc ggcttgaaca ttgatgccga agaagccgac cgcctcgaat
     4201 tgtcgcttga tttgatggac agactgcttg ccgaccctga tttggcaggg tttaacggca
     4261 ttggttttgt ggtgcaggcg taccaaaaac gttgcccgta tgtgatcgag catttaattg
     4321 agaccgcccg taaacataat cgccagctaa tgattcgctt ggtaaaaggc gcatattggg
     4381 acactgaaat caagcgggcg caaatggacg gtgcagaggg ctatccggtc ttctcccgta
     4441 aggtgcatac cgatttgaac tacatcgttt gtgccaaaaa attgctggcg gcgcaagatg
     4501 tgatctatcc gcaatttgcc acccacaacg ctcaaactct cgccaccatt taccacttgg
     4561 cacagggcaa acgttttgag tttcaatgct tgcacggtat gggagagagc ttgtacgacc
     4621 aagtggttgg cagcgataat cttaacgtgc aatgtcgcat ttatgcccct gtcggtactt
     4681 atcaaaccct gcttgcctat ttagtacgtc gcttgttgga aaacggagcg aacagctcat
     4741 ttgttagcca aattgtggat gaaaatctca gtgtagatga tctggctcaa gcccctgttc
     4801 aaaaagcaga actgaccaat ggcactatgc acccgaaaat tccattgcca gtcgatttat
     4861 ttgacgacaa tcgtgttaat tccaaaggct atgatttaac tgatgcagta agcctacaaa
     4921 atttagaaaa tgccctcaat gaacttacca aacagcatta ccgtgctgaa ccacagctgg
     4981 caaatgataa tacaagcggt caagaaagcc gaaaaattta caatccagcg aaccaagctg
     5041 aattagtcgg cgaagtgatt gatgccaccg aaaacgatat ggaacaggcg tttgaaagtg
     5101 cggcggcgtt ccaaagtgaa tgggcgaata cttcccctgc ggtgcgtgcc gagtgcttag
     5161 aaaaaatggc ggacttgatg gaagccaata tgccacaact gttcgatttg gcggtgcgtg
     5221 aggcaggcaa aacgctcaac aatgcaattg ctgaagtgcg tgaagccgtc gatttctgtc
     5281 gttattatgc caaagaggta cgcaacaaca ttgaagcata caaaaatccg cgtggcattg
     5341 tagtagcaat tagcccgtgg aactttccgt tagcgatttt tgtgggtgaa gtttcatctg
     5401 cgttggtggc aggcaatgtg gtactagcaa aaccagctga acaaacttcg ttaatggcac
     5461 attatgctgt cagccttttc taccaagcag gtgtgccgaa agcggcgttg caatgcttac
     5521 cgggtagagg aaaaacggtt ggggtggcgt tggtggcaga tcatcgtgtg aacggcgtga
     5581 tttttactgg ttcaacagag acagctaaaa acattaaccg caatttgcac aaaaacgaga
     5641 aaattatacc gcttattgcc gaaactggcg gacaaaatgc aatgattgtt gatagctcgg
     5701 cactgggcga gcaggttgtg atagatgttt taaactccgc atttgactca gcagggcaac
     5761 gttgttcggc attgcgtgtg ctgtatctgc aacgtgatgt tgccgatcac attctcacaa
     5821 tgctcaaagg agcaatggcg gagttgaaag ttggtcttcc acaacactta actaccgatg
     5881 tcggaccagt aatcgataaa gtcgcacaac aacgcttgct cgatcatatt gaaaatctca
     5941 aaaaatcggc gaaaagttac tatcaggtgg ctatctcctc tgaaattgcc gaaaatggta
     6001 ttttcgtacc gccaacgctg ttagaaatag atcatatcag ccagcttaaa cacgaagtat
     6061 tcggaccggt gctacacgtt atccgttttg atgcggataa actcgaccaa gtgattgccg
     6121 acataaactc cacaggtttc ggtctaacca gcggtttgca tagccgaatt gatgaaacgg
     6181 tggatttatg gttgaaatct gtccacgctg gaaatctgta tgtaaaccgt aacacggtag
     6241 gggctgtggt cggcgtacag ccattcggtg gaatggggtt atcaggaact gggccgaaag
     6301 ctggcgggcc gctctatcta caacgtttag taaaccgcca agaatggaca ttgaacggtt
     6361 tacagggcaa tgcacaagcg gtcgattttg acttaaattt tgcaatccgc aaggttctaa
     6421 gtggagctga gcagcaaacg gcgttagatc tggccaaaag ccttgcacgc cgctcgccac
     6481 tcggaaaaac ctacccaatg cagggtatta ccggcgagaa aaacgagatg attttcgtgg
     6541 ctcgcccaca gattgggatt agcaaaggta atttggcttc acaggtgcaa gccttgattg
     6601 ccattgtaac ggtcggcagc caagcggtgg cagaaaaatc aagcgagctg gcaaaacacg
     6661 cctctgcctt tggtaagaaa ttacaggtgg tggatgattt caacagtctc gatcacctca
     6721 gcacactcat tgtgcttgac ctgctttcta gtgaggaaaa attgcatcat gccgaacgca
     6781 aaggggcgat tttgacctac atcgaagggc tggatttagc gctctcactg ctgccgttgg
     6841 tacacgagaa agcaatcagc atcaacaccg ctgccgcagg gggaaatgcc agcttaatga
     6901 gtgaaatgga ttaagcaaca aacaaaagag tataagaggg cagatcacaa tgatctgcct
     6961 ttttatttta aggggctgtc ctagataacg actaaaactt ccatttaggt taagataacc
     7021 ctatgagaaa aagtcgtcta agtcagtaca aacaacataa actcatagag ctgtttgtag
     7081 caggcgtaat cgctcgaaca gccgcagagt tagtgaatgt aaataaaacc accgcagcct
     7141 attattttca ccgtttgcga ttgctcatct atcaacatag ccctcatttg gaaatgtttg
     7201 agggagaaat tgagattgat gagagctatt tcggcggtca tcgcaagggt aaacgaggtc
     7261 gtggtgcagc aggcaaaacc gccgtattcg ggcttttaaa gcgtgacggc aaggtttata
     7321 ccgtagtagt gccgaacaca caatctgcta cacttttgcc gattattcgg gaaaaggtga
     7381 agcccgatag ccttgtttac accgattttt atcgaagcta tgatgtgctt gatgtgagtg
     7441 aatttaacca ttttcgtatc aatcacagca cacacttcgc agaaaatcaa aatcacatta
     7501 acggaattga gaatttttgg agtcaagcaa aacgtcattt acgcaagttt aatggtattc
     7561 cgaaagccca ttttgagcta tatttgaaag aatgcgaatg gcgttttaat cacagtgact
     7621 taaaatctca aatattcctt ttaaaacaat tggttaaagg ggggttaggt tagttatcta
     7681 ggacagcccc taaaagtaat ataaccgata tttaggcctg acttttcaaa taattgaata
     7741 tctttattcg cttttaaagc agacaaatct gacgggttcg gataaggcat cgcttggcat
     7801 tcgttcttct ccaatttagc taaacgtact gaggcatcgg gcgtaatact aaatacaagg
     7861 cgatctatct tcgcttttcc ttcccaatag tgttcaaatg ctgtaaatct taccgctgcg
     7921 tccttttggt aaccatagaa ctggaatgca cctgtgccta taggttctaa atctaatttt
     7981 tccggcgtac ccgctatttg cattttattt gcatattccg cagaaaagat cgccataaaa
     8041 tccatagcta aattagcaag aaagggggca ttcggttcag ataattcgat ttttaccgtg
     8101 taatcatcta cttttgttac atttttgatg atgttttgca tattcattcc gtagaaaaac
     8161 tcatagttac cgccggacaa tttgtgatat ggattcgtct tatcaaactg acggttaatc
     8221 gaaaaaataa catcatcagc attaaaataa cgactagggg taaaactttt attactctgg
     8281 aactgcacat tctgacgcaa gaaaaaagta taaatttttc cgccttcact gatttcccat
     8341 cgctctgcca gagaaggagt gaggttagtg gtaccttttt caaaatcaat caggcgatta
     8401 tagattgctt gcccgacatc aagagtagct ccatctgttg caatctgagg attcaatgct
     8461 gccggagatg attccaaaca gtaagtaaaa gatttaggtg ctgcgaaagc agaacctgta
     8521 aatgctaaag aaataagtgc aagttgtgtc agcttgttca ttgtcatatc cttaaatgtt
     8581 aagcaataaa aaaccctttc aaaagttgcc ttccgaaagg gttagaattg ggtttgcgat
     8641 tttggattgc gtttgccatt tcaggttttc ggaagatatc ttccgaacac gccaaatgcc
     8701 cgaaagatta atcggtcaaa tggtagtgat gatgtttaac gcaatagctc ataatattct
     8761 ccaaaattga atgtttagga atttacgctt tttaaaaatc aattgcaaac gttttcttta
     8821 aaattttgta aaaaattcaa catttttcac cgcttgtatc gtacctagga gcaaatggcg
     8881 atttgctcct aggtttccaa gcaataggct attttttctt cgcatattta agtgagtcaa
     8941 tcgctaccgc caagataatg atgccacctt taataatata ttgccagtaa gggtttactc
     9001 caatataggt taagccgtag ttgataacgg tgaagattaa cacccctgtt actacaccga
     9061 tgatagtacc cacaccaccg gcaaaggata ccccacctac cacacaagcg gcaatggcat
     9121 ccatttcata cataaagcct aagttgttgg ttgcactacc gatacgacct gcttctaaca
     9181 taccgccgaa ggcatagaag atgcctgaaa gcatataaat acccatcagg ttaagcggta
     9241 cgtttacacc ggaaactcgt gctgcttcag ggttgccgcc aatagcaaat acgtttttac
     9301 cgaagcgggt tttattccat aacgtccaca taataatggt agcaatcacg gcataaatag
     9361 tgatgtagga tagcctaaag tcgccaaagc ggaagaagcc ttgtgcaaag gttgagaaat
     9421 catcgctaaa gcctgcaatt ggcgatgagc ctactgcatc gtagtaaagc gagttgatac
     9481 catacacaat aatcattgtt cccatcgtgg caataaacgg tgttacgttg aggtaagcca
     9541 ccacaaagcc gttaaataaa ccaatgacag caccgatggc acacacggtt aatacaacca
     9601 caggaatcgg gatttccgag aggtttggga ataccttgtt catattttcc attgattgga
     9661 gcaaggtggc ggaaattacc gctgccaagc ccacttggcg accggcagat aagtctgtcc
     9721 cttgtgttac aatcaagcct gcaaccccta atgcaataat caaacgcaca gaagattgcg
     9781 ataaaatgtt actgaagtta cgcaagctca agaaacttgg gtcttgcaca ataatcacaa
     9841 taagtaagat taataatacg aagtaaatcg cattttgttt aaaaaaatcg agtgttctat
     9901 tttgttgtaa agcagacata cttcactcct tgttataaat attttgctgc gagttgcaag
     9961 atttcttctt gcgaggtgtg agcggtttcg acaatacctg caactttccc gttactcatc
    10021 actaaaattc ggtctgtgac cccaagcaat tccggcattt ccgatgaaat cataatgatg
    10081 cctttatctt tattcgccag ctctaaaatc aactggtaaa tttcaaattt tgccccgata
    10141 tcgataccac gggtcggctc gtcaagcatc aagatttcag gctgggttaa caaccaacgc
    10201 ccgataatca ctttttgttg gttaccgccg gaaagtgagc caatatgcgt ttgatgcgat
    10261 ggggttttta cattcatcga atcaattacc cattgggtat cgcttttcat ttttttattg
    10321 ctcagtaagc cgaacttgcc tagataagac ttcatatttg aaatcagaga gttaaactca
    10381 atgcttaagt tggcataaat ccctgttgaa cggcgttctt ctgtaaccaa tgcaaagccg
    10441 ttattaatcg catcaaaagc gttgcggtta ttgatttctt tatcgtttag tcggatagtg
    10501 ccgcctgctt tctcccgtac accgaaaatg gtttcaacaa tatcagtccg ttttgctcca
    10561 actaagccgg cgatgcctaa aatttcccct ctgcgtaagc taaagctgac atcttgaata
    10621 gagggttgat tttttgccgt taaatgctca acttcaagaa tcacttcttt cggcagattg
    10681 gttttttcag ggaaacgctg ggtcagctca cgccctacca tcattgaaac cacttgatcc
    10741 attgaggtat ctttaattgc aacggtgttt acccatttac cgtcacgcaa aatggtaatt
    10801 tcatcacaaa ttttaaaaat ttcgtccatt ttgtgtgaaa tatagataat gccacagcct
    10861 ctgtctttca gtttttggat aattttaaat aaatgctcga cttctttttc tgaaagtgac
    10921 gaagttggtt cgtccataat cacaattttg gcattgtaag agaaagcttt tgcaatctcg
    10981 atcatctgca tttgtgaaac cgataatttg gctactttat cacgtggatc aacatcaata
    11041 tctaattcat caaaaatcgc cttagtatca cgatacattt tatcgtgatc tacaaaaggc
    11101 ccttttagtg ggtaacgacc tagccataag ttatccatta ccgtcacttg ttttactagg
    11161 ttcaactctt ggtgaaccat tgagatccca ttttctaacg cctcttttga ggtcttaaaa
    11221 ttcaccggct tgccaagaaa gagaatatct ccctcatctt tagcataaat cccaaataag
    11281 catttcagta acgttgattt acctgctcca ttctctccca ttaaggcgtg aacactatgg
    11341 gatttcaccg ttaagttagc attatctaag gcttttaccc cgggaaatga cttgctaaca
    11401 tttgtcattg tgagtaaaac ttcacctgtc atatctcacc cctgattaca tcgaaaaatc
    11461 gaaaaaaagc acgggtatcc atcacccgtg ctaaaagcgt gaattatttt aaaaattcag
    11521 ataagttgtc tttatcgaca ccaacgtaag gaatacgcac cacacggttt tccaatttcc
    11581 attgtgtacc agcaactgca tctttaccgt ctgctaagtt agcagaaagc tgaacaaccg
    11641 ctttaccttg gtttacacca tcatttaata ccgtaccggc taattcacct tttttgatta
    11701 attgaagtgc ttctggcaat gcatctacac cgaagattgg taattttcta ccgtgagctt
    11761 tggttgcttc taatgcacct aacgccatac catcattatt agaaataatt acttcgatgt
    11821 ctttcgcttt accacttgat aaccaagcat ccactttatc tttagcttgg gctgcatccc
    11881 ataatgctgc gtccataaag atttgctcac tgtcgatacc ttgtgctttt aagctttcta
    11941 ccacatattt agtacgtgct tccgcatcag ggtgacccgg ctcacctttt aataaggcaa
    12001 attggatttt accgtcttta ttcaagtcta attcaggatg ggctttccac tgttttgcaa
    12061 ttaactcacc ttgaataatg cctgactctt tcggctcagt acctacataa taagctttcg
    12121 gatagctatc aatcgcagct gcacccgggt ctttattgaa gaacaccaca ggcacatctt
    12181 cactttttgc tttttgaata attgttttat aagctgatgg atccactaag ttaattgcta
    12241 atgctttaac ccctttagaa agtaatacat caacttggtc gttttgaata gattgcgtat
    12301 tttgcgagtc attcattaat aactcgactt tttgtgtttt accctctttt tcgatttctt
    12361 tacgcattaa tgccataaag ttatcgtcat atttataaat tgttacacca atacggtttt
    12421 cagcttgagc tgtactgatc gttgcaccta atgcgactgc cattgccact gcacttaata
    12481 ctgctttctt catagtagat cacctctttt atgtgtttat agggaaatga attgcttacc
    12541 ataagcaact tggtgcaaag tataactaat tttaaaaaaa caatccgtga tcattctcac
    12601 agaattaaga caaagtggag aaatttttaa ttttaag
//
LOCUS       DANLZD010000078        12564 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.078, whole genome shotgun sequence.
ACCESSION   DANLZD010000078 DANLZD010000000
VERSION     DANLZD010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12564)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12564)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12564
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.078"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..677
                     /gene="fkpA"
                     /locus_tag="PXE26_001585"
     CDS             <1..677
                     /gene="fkpA"
                     /locus_tag="PXE26_001585"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5594155.1"
                     /translation="STNVMAEEKADPKFVDDSSYAVGVLMGKNINGVIESQKDIFTYN
                     QDKILAGVQDTLKKTGKLTDEDLQKQLKSLDAYLSAKEAKINEEKTKATVAAGDKFRA
                     DYKKQSGVKETASGLLYKIEKAGEGNSPKAEDTVKVHYKGTLTDGTVFDSSYDRGEPI
                     EFQLNQLIPGWIEAIPMLKKGGKMEIVVPPALAYGDRAAGKIPANSTLKFEIELLDFK
                     AADAKK"
     gene            774..1430
                     /locus_tag="PXE26_001586"
     CDS             774..1430
                     /locus_tag="PXE26_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5594156.1"
                     /translation="MTKKFTPFSDEDHAILASYFPMVDGIAALIGEHCEIVLHSLEFL
                     EHSAIYIANGHNTNRKIGSPITDRALKSLHHMATDSVSKPYFTKAKGGVLMKSITIAI
                     RNGKQHVIGLLCININLEVPTSQFLNSFIAPVDTASEVTFASSVEDLVSQTIQTTIDD
                     VMADRQISNNNKNRQIVISLFEKGIFDIKDSINQVAEKLDISRHTVYLYIRQIKQDND
                     "
     gene            1430..1807
                     /gene="tusD"
                     /locus_tag="PXE26_001587"
     CDS             1430..1807
                     /gene="tusD"
                     /locus_tag="PXE26_001587"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusD"
                     /protein_id="HDL5594157.1"
                     /translation="MDYVLAIKSPVYGSQGAFLAYQVAEELLKANHTICQIFFFQEGV
                     SNANALVNPASDEVNLVEMWKKLAKLHRLPLHLCIAAAQRRGVVDEQISANATHNLAE
                     GFTLAGLGEFSQAVLKADRLLTF"
     gene            1809..2180
                     /gene="tusC"
                     /locus_tag="PXE26_001588"
     CDS             1809..2180
                     /gene="tusC"
                     /locus_tag="PXE26_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusC"
                     /protein_id="HDL5594158.1"
                     /translation="MKKYKLAFLFTQPPFGSAVSREGLDALLAASAFCDEQEIAILFI
                     NDGVFNLIADQQPEKLLQKDHISTFKLLELYDLTECFICQESVSLRGLDNADWLLRML
                     QFKTHAEMIALLNQAEKVMTF"
     gene            2190..2465
                     /gene="tusB"
                     /locus_tag="PXE26_001589"
     CDS             2190..2465
                     /gene="tusB"
                     /locus_tag="PXE26_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusB"
                     /protein_id="HDL5594159.1"
                     /translation="MLYTLSKANYDEETLNFFFSHLSENDAVVLWQDGVLQAVKSPQF
                     FAKLPRCYLLAQDVQARGLQEKLTAFQCISLSELVKLTAVYFPQVAL"
     gene            2581..3480
                     /locus_tag="PXE26_001590"
     CDS             2581..3480
                     /locus_tag="PXE26_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594160.1"
                     /translation="MVMAEENNTWVDKKHETVSTTLDRWANNINSWLGDADPDKPGTA
                     SLRVMLDSRWDKHDKFTYKPRVRGKIKLPILKKHLNVVFGDDELDNELTDKNHAGKLY
                     KNVNPNKRYNSREARDSNSSIGLRWSDGIKALGIETDLDAGIRSGSDIFGRLRISKDW
                     KITDQFSTRLEQIYRYGSESKHYLRTNFENKYTETDTTFIMNHTNFEYRHDVDEERSW
                     GNSLYRQHNFKPLTHISYGISMGGRLDKELSKFNYWGPFVSYRQPIWRNWLFIQPEIS
                     FYNDKDKDRKHFIQTFVRLEAIF"
     gene            3830..7855
                     /gene="rpoB"
                     /locus_tag="PXE26_001591"
     CDS             3830..7855
                     /gene="rpoB"
                     /locus_tag="PXE26_001591"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HDL5594161.1"
                     /translation="MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSFEKFIEKDPE
                     GQQGLEAAFRSVFPIVSNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRL
                     VSYDREAAAGTVKDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTE
                     EILNLFFEKIKFEIADNKLLMTLVPERLRGETASFDIAANGKVYVEMGRRITARHIRA
                     LEKDNVTQIEVPVEYIVGKVAAQDYVDLSSGEVICPANMEISMEMLANLSQAGYNQIE
                     VLFTNDLDHGPYISETLRVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSA
                     ERYDLSAVGRMKFNRSLEIPEGVGSGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGN
                     RRIRSVGEMAENQFRIGLVRVERAVRERLSLGDLDGVTPQDLINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEG
                     PNIGLINSLSVYARTNNYGFLETPFRKVVNGQVTEEIEYLSAIEESNNIIAQANSNLD
                     ENFRFTDTYVTCRQQGESGLFKPEEVQYMDISTQQVVSVAAALIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAIVAKRGGTVQYVDASRIVVKVNEDE
                     TIPGEAGIDIYNLIKYTRSNQNTCINQVPCVNLGEPVARGEILADGPSTDLGELALGQ
                     NIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCVARDTKLGAEEITADIPN
                     VGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKEIEEMQLCEAKKDLAEELEILEAGLF
                     TRVRNLLIEGGVKESALDGVAREKWLEQTLEDEAKQNQLEQLAEQHEELRKEFERKLE
                     IKRNKIIQGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYD
                     ENGQPVEIVLNPLGVPSRMNIGQILETHLGLAAHGIGDQIDKMIKQQQEVAKLREYMQ
                     KAYDLGHGSQVVDLSTFSDEEVMRLAQNLRKGLPLATPVFDGAHESEIKGLLELGGLP
                     TSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA
                     QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHYMEPGIPE
                     SFNVITKEIRALAIDMELDEA"
     gene            8118..12401
                     /gene="rpoC"
                     /locus_tag="PXE26_001592"
     CDS             8118..12401
                     /gene="rpoC"
                     /locus_tag="PXE26_001592"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HDL5594162.1"
                     /translation="MKDLVKFLKAQTKSNEDFDVIKIGLASPDKIRSWSFGEVKKPET
                     INYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRER
                     MGHIELACPVAHIWFLKSLPSRIGLILDMPLRDIERVLYFESYVVTEPGMTDLEKNQL
                     LTEEQFMDAEERWGDEFEAKMGAEGIQALLRDLDLEHQCETLREELQETNSETKRKKI
                     TKRLKTLEAFLQSGNKPEWMVMTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR
                     NNRLKRLLDLVAPDIIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKG
                     KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFRPFIYSKLENRGIA
                     STIKAAKKMVEREDPIVWDILAEVIREHPILLNRAPTLHRLGIQAFEPLLIEGKAIQL
                     HPLVCAAFNADFDGDQMAVHVPLTLEAQLEARALMMSTNNVLSPASGDPIIVPSQDVV
                     LGLYYMTREKVNGKGEGMYFLDPREAEKAYRTGQAELHSRVKVRVTEYEKNEAGELEA
                     KTSLVDTTIGRSILWMIAPKGMPFSLFNQTLGKKAISKLINESYRRLGLKESVVLADQ
                     IMYTGFAYAARSGASVGIDDMVIPEQKYAIIEAAEAEVAEIQEQFNGGLVTAGERYNK
                     VIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASFNSIFMMADSGARGSAAQIRQ
                     LAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT
                     RRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRVLGRVVAEDVLKPGTDE
                     VLIPRNTLLDEKWCDVVDRESVDVIKVRSVVTCDTDFGVCAKCYGRDLARGHLINQGE
                     AVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIKLTNAKFVTNKEG
                     KIVLTSRNTELTVIDTFGRTKENYKVPYGAVLSKHDGAEVAVGEVVANWDPHTMPVIS
                     EVSGRIQFSDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALRLVDSNGKD
                     ILIPGTDVAAQYFLPGKAIVTLDDGAEIEVGEALARIPQESVGTKDITGGLPRVADLF
                     EARKPKEPAILAEISGIVSFGKETKGKRRLVITPAEGEAFEEMIPKWRQLNVFEGEMV
                     QRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQMLR
                     KAVITNAYDSEFLEGEQVEVARVKIANRKRAEEGKPLVEFERELLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKQDELRGLKENVIVGRLIPAGTGFAYHQARAKKRAQLEA
                     GIAVVPEFEAPAAKANSFVTDADIEAEFEFVADDATQSLAALLNAGEEE"
BASE COUNT         3797 a         2424 c         2897 g         3446 t
ORIGIN      
        1 ttagtacaaa tgtgatggca gaagaaaaag cagatcctaa atttgtggat gattcctctt
       61 atgccgtggg tgtattaatg ggtaaaaata ttaatggtgt gattgagtca caaaaggata
      121 tttttaccta taaccaggat aaaatcttag ccggtgttca ggacacctta aagaaaaccg
      181 gtaaattaac cgatgaagat ttgcaaaagc agttaaaatc gttagatgcc tatttatctg
      241 cgaaagaagc aaagattaac gaagaaaaaa ccaaagcaac ggtagctgca ggcgataaat
      301 tccgtgctga ttataaaaaa cagtctggcg taaaagaaac ggcttcaggc ctgttatata
      361 aaattgaaaa agcaggtgaa ggcaattcac caaaagcgga agatactgtg aaggtgcatt
      421 acaaaggcac tttgactgat ggcacggtat ttgacagctc ttacgaccgt ggtgagccga
      481 ttgaatttca gttaaatcaa ttaattccgg gttggattga agcgattcct atgttgaaaa
      541 aaggcggtaa gatggaaatt gtagtgccac ctgcattagc ttatggtgat cgtgccgcag
      601 gcaaaattcc agcaaattca accttgaaat ttgaaattga attattagat tttaaagcag
      661 cagatgctaa gaaataattc gttattcctt aattattgaa gatacgtaag cggttagatt
      721 tattataata tttgcaaaaa atgtgataaa actaaccgct tgtaatttgt attatgacca
      781 aaaaatttac gcctttttct gacgaagatc acgccattct tgcttcttac tttccgatgg
      841 tagatgggat tgcggcactg attggtgagc attgcgaaat tgtattgcat tcgttagagt
      901 ttctggaaca ttcggcaatt tatattgcta acggacacaa tactaaccgt aaaatcggct
      961 ctccgattac tgaccgtgca ttgaaatcgc tgcatcatat ggcaacggat agcgtctcca
     1021 aaccttattt taccaaggca aaaggtggcg ttttaatgaa gtctatcact attgcgattc
     1081 gtaatggtaa acagcacgtt atcgggttac tgtgcattaa tattaatttg gaagtgccta
     1141 cctcacagtt tctcaattct tttattgccc ctgtagatac cgcttcagaa gttacttttg
     1201 ccagttcagt agaagatttg gtttcacaaa cgattcaaac gaccattgat gatgtgatgg
     1261 cagatcgtca aatttctaac aataataaaa atcgtcaaat tgtgatttcg ttatttgaga
     1321 aagggatttt tgatattaaa gattccatta accaagtagc ggagaagctg gatatttcac
     1381 gccatactgt gtatctctat attcgtcaaa ttaagcagga caatgattaa tggattatgt
     1441 attagcgata aaatcaccgg tttatggttc acaaggggca tttttagcct accaagtggc
     1501 ggaagaatta ttaaaagcca atcatacaat ttgccaaata ttcttttttc aagaaggcgt
     1561 gagcaatgct aatgccttag tgaatccagc aagcgatgaa gtgaatttag tcgagatgtg
     1621 gaaaaaattg gctaaattgc accgcttgcc tctgcatttg tgcattgctg ctgcccagcg
     1681 tagaggcgtg gtggatgagc aaatctcagc taatgcaaca cataatttag ccgaaggatt
     1741 taccctagcc gggttaggcg aatttagcca agcagtatta aaagcggatc gattactgac
     1801 tttttaagat gaagaaatat aaacttgcct ttttatttac ccagccacct tttggttcgg
     1861 cagttagccg tgaggggcta gatgccttgc ttgcagctag tgctttttgt gacgagcaag
     1921 agatagctat cctctttatc aatgatggcg tatttaatct cattgccgat caacagccgg
     1981 aaaaactctt acaaaaagat catatttcca ccttcaaatt attggagttg tatgacttaa
     2041 ctgaatgttt tatttgccaa gaaagtgtaa gtttacgagg gctggataat gcagattggt
     2101 tactgcgaat gcttcaattt aaaactcacg ctgagatgat cgcattgctc aatcaagctg
     2161 aaaaagtaat gacgttttaa ggaatattta tgctttatac cctttccaaa gcgaattatg
     2221 atgaagaaac cttaaacttc tttttctcac atcttagtga gaacgatgcg gttgttctgt
     2281 ggcaagatgg cgtgctacaa gcggtcaaaa gtccgcaatt ttttgcaaaa ttgccccgtt
     2341 gctatttatt ggcacaagat gtgcaagctc gaggattgca agagaagctc actgcatttc
     2401 agtgcatttc attatccgaa ttagtcaaat taacagcggt ttattttccc caggttgcac
     2461 tgtaacctag agaggatatt ttttgtaata ccaaataatt tagattatga tgtgattcct
     2521 aaaaaggaga atattatgaa aacaaaatgt cttattccgc tactagcact tacacctgtt
     2581 atggtgatgg cagaagaaaa taacacttgg gtagacaaga aacatgaaac agtaagcact
     2641 accttagatc gttgggcaaa caatattaac agttggctag gtgatgcaga cccagataaa
     2701 ccgggaacgg cttctttacg ggtaatgtta gatagccgtt gggataaaca cgataaattt
     2761 acttataagc cccgtgttcg tggtaaaatc aaactcccta tcttgaaaaa gcatctaaat
     2821 gtcgtatttg gtgatgacga actggataat gagcttaccg ataaaaatca tgctggaaaa
     2881 ttgtataaaa acgtcaatcc aaataaacgc tataactctc gtgaagcgag agattcgaac
     2941 tcttctatcg gtttacgttg gtctgatggc attaaggctt tagggattga gaccgattta
     3001 gatgctggta ttcgttcggg aagcgatatt ttcgggcgtt tacgcatcag taaagattgg
     3061 aaaatcaccg accagttcag tacccgccta gagcaaattt atcgttacgg ttcagagagc
     3121 aagcactatt tacgtactaa ctttgaaaat aaatataccg aaacggatac cacctttatt
     3181 atgaaccaca ccaattttga atatcgtcat gatgtagatg aagaaagaag ttgggggaat
     3241 agtttatatc gtcaacataa cttcaaacca ctcacgcaca tcagctatgg tatcagtatg
     3301 ggggggcgtt tagataaaga gttatcaaaa tttaactatt ggggtccatt tgtctcctat
     3361 cgtcaaccaa tctggcgcaa ctggctcttt atccagcctg aaatcagttt ttataacgac
     3421 aaagataaag atcgtaagca ctttattcag acatttgtac gtttagaggc tatcttctag
     3481 ctattaagcc tcaagtagaa tcttggggct tgtttttgca agcggtcaat ttcttgccaa
     3541 aatttacaaa atccgctata attcctaacc atttttagca aaaattggct gacggcttga
     3601 ccggtcagcc ttttgtgctt gaacgcaagg gctgattttg tcattttaat cagcaaaatt
     3661 tgcaaatttc ctgcccaatt tgaccgcttg cagtagcgat ttctgactgc ttgattggcg
     3721 attggaaaat gacatctcgt acagttttta taatgccact tccaaccgag tctttcgtgt
     3781 cggattgtgt aatctcaacc aaaatatatt tcagaggcta tcttaaaaaa tggcatattc
     3841 atattccgag aaaaagcgta tccgtaagag ctttggcaaa cgcccacaag ttctgaacgt
     3901 accttatcta ttaacaattc agcttgattc ttttgaaaaa tttatcgaaa aagatcctga
     3961 agggcagcaa ggtttagaag cggcattccg ttctgttttc ccgattgtga gcaacaatgg
     4021 tgcaacagaa ttacaatacg tttcttacga attaggcgag ccggtgtttg acgtgcgtga
     4081 gtgccaaatt cgtggtacaa cctacgctgc accattacgc gtgaaattgc gtttagtctc
     4141 ttacgatcgt gaagccgcag ccggtacggt aaaagacatt aaagagcaaa acgtgtatat
     4201 gggcgaaatc ccattaatga ccgataacgg tactttcgtg attaacggca ccgagcgtgt
     4261 tatcgtttct caattacacc gtagcccagg tgtgttcttc gattctgaca aaggtaaaac
     4321 ccactcttcg ggtaaagtgc tttataacgc acgcattatc ccttaccgtg gttcttggtt
     4381 agatttcgag tttgatccga aagataactt atttgcccgt atcgaccgcc gtcgtaaatt
     4441 gccggcaacc attattctac gtgcattagg ctacaccacc gaagaaatct taaatttatt
     4501 cttcgagaaa attaaatttg aaattgccga taataaatta ttgatgacgt tagtgcctga
     4561 gcgtttaaga ggcgagactg catcatttga tattgcagca aacggcaaag tatatgttga
     4621 aatgggtcgc cgtattaccg ctcgtcatat ccgtgcgtta gaaaaagaca atgtgaccca
     4681 aattgaagtg ccggtggaat atattgtcgg caaagtagcg gctcaagatt acgttgattt
     4741 atcttcaggt gaagtgattt gcccggcgaa tatggaaatc tcgatggaga tgttggcgaa
     4801 tttatcacaa gccggttaca accagatcga agtattattt accaacgatt tagaccacgg
     4861 tccatatatt tctgaaacct tacgtgttga tccaacttac gaccgtttaa gtgcgttggt
     4921 tgaaatctat cgtatgatgc gtccgggcga accaccaacg aaagaagcgg cagaagcatt
     4981 attcgataat atgttcttct cggcagagcg ttatgattta tcggcagtag gtcgtatgaa
     5041 attcaatcgc tcgttagaaa ttccggaagg cgtaggcagc ggtattttaa gcaacgatga
     5101 catcatcggt gtgatgaaaa aattaatcga aatccgtaac ggtcgtggtg aagtggatga
     5161 tatcgaccac ttaggtaacc gtcgtatccg cagcgttggt gaaatggcag aaaaccaatt
     5221 ccgcattggt ttggtgcgtg tagaacgtgc ggtgcgtgag cgtttatctt taggcgattt
     5281 agatggtgta acaccacaag atttaatcaa cgctaaaccg atttcagcag cagtgaaaga
     5341 gttctttggt tcatcacaac tttcgcaatt tatggaccaa aacaacccgc tttcagaggt
     5401 aacacataaa cgccgtatct cggcattagg cccgggtggt ttaacccgtg agcgtgccgg
     5461 ctttgaagtg cgtgacgtac acccgactca ctatggtcgt ttatgtccaa tcgaaactcc
     5521 tgaaggcccg aatatcggtt tgatcaactc actatcggtg tatgctcgta ctaataacta
     5581 cggtttctta gagactccat tccgtaaagt ggtgaatggt caagtaaccg aagagatcga
     5641 gtatttatct gcgattgaag aaagcaacaa tatcattgca caggcgaact caaacttaga
     5701 tgagaacttc cgttttaccg atacttatgt aacttgccgt cagcaaggcg aatcgggctt
     5761 attcaaaccg gaagaagttc aatatatgga catctcaacc caacaagtgg tttctgtggc
     5821 tgcggcgtta attccgttcc ttgagcacga cgatgcgaac cgtgcgttaa tgggtgcgaa
     5881 catgcaacgt caggcagttc caaccttgcg tgcggacaaa ccattagtcg gtaccggtat
     5941 ggaaaaacca attgctcttg actcaggtgt agcgattgtc gcaaaacgtg gtggtacggt
     6001 gcagtatgtt gatgcgtcac gcattgtagt gaaagtaaat gaagatgaaa ccattccggg
     6061 cgaagcgggt atcgatattt ataacttaat caaatacacc cgttcaaacc aaaacacctg
     6121 tatcaaccaa gtaccttgtg tgaacttggg tgagccggtt gctcgtggtg aaatcttagc
     6181 ggacggtcct tcaacagact taggtgaatt ggcattaggt caaaatatcc gtgtggcatt
     6241 tatgccttgg aacggttata acttcgaaga ctcaatgtta gtttctgagc gtgtggtaca
     6301 agaagatcgc tttaccacta tccacattca agaattatct tgtgtggcgc gtgataccaa
     6361 attaggtgca gaagagatca ccgctgatat tccaaacgtg ggtgaatctg cattaagcaa
     6421 attagatgaa tcaggtatcg tttacatcgg tgcagaagtg aaaggtggcg acatcttagt
     6481 aggtaaagta actcctaaag gtgaaaccca attaacaccg gaagaaaaac tattgcgtgc
     6541 gatcttcggt gaaaaagcct ctgatgtgaa agattcatca ttgcgtgttc caaacggtac
     6601 ttcaggtacg gttatcgatg ttcaagtatt tacccgtgat ggcgtagaga aagataaacg
     6661 tgcgaaagaa atcgaagaga tgcaactgtg tgaagcgaag aaagacttag cggaagagtt
     6721 ggaaatctta gaagccggtt tatttactcg tgttcgcaac ctattaattg aaggcggcgt
     6781 aaaagaatct gcattagatg gcgttgctcg tgaaaaatgg ttagaacaaa cccttgaaga
     6841 cgaagcgaag caaaatcagt tagaacagtt agcggaacag cacgaagagt tacgcaaaga
     6901 atttgaacgt aaacttgaga tcaaacgcaa caaaattatc caaggcgacg atttagcacc
     6961 gggtgtgtta aaagtagtga aagtttacct tgcggtgaaa cgccaaatcc agccgggtga
     7021 taagatggcg ggtcgtcacg gtaacaaagg ggttatctcg aaaatcaacc ctgtggaaga
     7081 tatgccatac gatgaaaacg gtcagccggt tgaaatcgta ttgaacccgc tgggcgtacc
     7141 gtctcgtatg aacatcggtc agatcttaga aacccactta ggcttagcgg ctcatggtat
     7201 cggtgatcag attgataaga tgatcaaaca gcaacaagaa gtggctaaat tacgtgaata
     7261 tatgcaaaaa gcctacgatt taggtcacgg ctcacaagtc gttgatttaa gcactttctc
     7321 tgatgaagaa gtgatgcgtt tagcgcaaaa cttacgcaaa ggcttaccgc ttgctactcc
     7381 ggtattcgat ggtgcacacg aaagcgaaat caaaggctta ttagagttag gcggcttacc
     7441 gacttcaggt cagatcacac tttatgatgg tcgtaccggt gagaaatttg agcgtccggt
     7501 aaccgttggt tatatgtata tgctcaaatt gaaccacttg gttgatgata aaatgcacgc
     7561 tcgttcaacc ggttcttata gccttgttac tcaacaacca ttgggtggta aagctcaatt
     7621 cggtggtcag cgtttcggtg agatggaggt ttgggcatta gaagcatacg gtgcggctta
     7681 tactcttcaa gaaatgctta cggtgaaatc ggacgatgtg aacggtcgta cgaagatgta
     7741 taaaaacatt gtagatggta cacattatat ggagccgggt atccctgaat cctttaacgt
     7801 aattaccaaa gagatccgtg cattagcaat tgatatggag ctggacgaag cgtaatggtt
     7861 tcactctccc ccttgatggg ggagagacag gcaaaggatt tgttcagaat cctttggcag
     7921 agagagggtg atgcaagcgg tgtaaatttg ctaaattttt gcaaaaatcg accgcttacc
     7981 ctctccctga ttttgcttct gaacgaggca aaatctatcc ctctcccaca aggggagagg
     8041 gtttaaaatc gcaaccaaat tcgtagagtg gatattcttt ccaccaaaca aaacaacctc
     8101 aaactagggg caaaaaagtg aaagacttag tgaagttttt aaaagcacaa acaaaatcga
     8161 acgaagattt tgatgtgatt aaaattggtt tagcatcacc ggacaagatc cgttcttggt
     8221 cttttggtga agtgaaaaaa ccggaaacca ttaactatcg taccttcaaa ccggagcgtg
     8281 atggtttatt ctgtgcacgt attttcgggc cggtaaaaga ttacgagtgc ttgtgtggga
     8341 aatacaaacg tttaaaacac cgtggcgtaa tttgtgaaaa atgtggtgtt gaagtaaccc
     8401 aaactaaagt acgtcgtgag cgtatggggc acattgaatt agcttgccct gtcgcacaca
     8461 tctggttctt aaaatcacta ccgtcccgta tcggtttaat cttagatatg ccgttgcgtg
     8521 atattgaacg tgtgctttat tttgaatctt atgtagttac tgaaccggga atgaccgatt
     8581 tagagaaaaa tcagttatta accgaagaac aatttatgga cgctgaagag cgttggggtg
     8641 atgaatttga agcgaaaatg ggtgcagaag gtatccaagc attacttcgt gatttagatt
     8701 tagaacacca atgcgaaacc ttgcgtgaag agttacaaga aaccaattca gaaaccaagc
     8761 gtaaaaaaat cactaagcgt ttaaaaacct tagaagcatt cttacaatcc ggcaacaaac
     8821 cggaatggat ggtgatgaca gtattaccgg tacttccacc ggatttacgt ccgttagtac
     8881 cgcttgacgg tggacgtttt gcgacttctg acttaaacga tttataccgc cgtgtaatta
     8941 accgtaacaa ccgtttaaaa cgcttgttag atttagttgc accggacatc atcgtgcgta
     9001 acgaaaaacg tatgttacaa gagtcggttg atgcgttatt agacaacggt cgccgtggtc
     9061 gtgcgattac cggttcgaac aaacgtccgt taaaatcttt ggcagatatg atcaaaggta
     9121 aacaaggtcg tttccgtcaa aacttattag gtaaacgtgt agattactca ggtcgttcgg
     9181 taattaccgt aggcccatac ttacgcttac accaatgtgg tttaccgaag aaaatggcgt
     9241 tggaattatt ccgtccgttt atctactcaa aattagaaaa ccgtggcatt gcttcaacta
     9301 ttaaagccgc gaagaaaatg gtagagcgtg aagatcctat cgtatgggat attcttgccg
     9361 aagtgattcg tgaacacccg attctactta accgtgcacc aacacttcac cgtttaggta
     9421 tccaagcgtt tgagccgtta ttgattgaag gtaaagcgat ccagttacac ccactcgtgt
     9481 gtgcggcgtt caatgcggac ttcgacggtg accaaatggc ggttcacgtt ccattaaccc
     9541 ttgaagcaca gttagaagct cgtgcgttaa tgatgtcaac caacaacgta ctttcaccgg
     9601 caagtggtga tccgattatc gtaccgtctc aggacgttgt actcggtctt tactatatga
     9661 cccgtgagaa agtaaacggt aaaggtgagg gaatgtactt ccttgaccct cgtgaagcgg
     9721 aaaaagcata ccgtaccggt caggctgaat tacattctcg tgttaaagtg cgtgttactg
     9781 aatatgagaa aaacgaagca ggcgaattag aagcaaaaac ttcgttagta gataccacca
     9841 ttggtcgttc aatcttatgg atgattgcac caaaaggtat gccgtttagc ttgttcaacc
     9901 aaaccttagg caaaaaagcg atctcgaaat taattaacga gagctatcgc cgtttaggtt
     9961 taaaagaatc tgtggtttta gctgaccaaa ttatgtacac cggctttgct tatgctgctc
    10021 gttctggtgc ctcagtaggt atcgacgata tggtaattcc ggagcaaaaa tacgcaatca
    10081 ttgaagcggc tgaagcggaa gtcgctgaga tccaagagca attcaacggc ggtttagtaa
    10141 cagccggtga gcgttataac aaagtgatcg atatttgggc tgctgcaaac gaacgtgttg
    10201 cgaaagcaat gatggaaaac ctttcaacgg aagaagtaat caaccgtgaa ggtaatccgg
    10261 aaaaacaagc ctcatttaac agtatcttta tgatggcgga ctccggtgct cgtggttctg
    10321 ctgcacagat tcgtcagtta gcgggtatgc gtggcttgat ggctcgtccg gacggttcga
    10381 ttatcgaaac cccaattact gcaaacttcc gtgaaggttt gaacgtatta cagtacttta
    10441 tttcaaccca cggtgcacgt aaaggtcttg ccgatacggc attaaaaaca gcgaactccg
    10501 gttacttaac ccgtcgttta gttgatgtgg cacaagattt agttatcatt gaagatgact
    10561 gtggtacgca cgaaggtatc gtgatgacac cacttatcga aggtggtgat gtgaaagaag
    10621 ccctgcgtga tcgtgtatta ggtcgtgtgg tggcagaaga tgtgttaaaa ccgggtacag
    10681 atgaagtatt aattccacgc aacaccttat tagatgaaaa atggtgtgat gtggtggatc
    10741 gtgaatctgt ggatgtgatc aaagtacgtt cggtagtaac ttgtgataca gacttcggtg
    10801 tgtgtgctaa atgttacgga cgtgacttgg ctcgtggtca cttaatcaac caaggtgaag
    10861 cggtcggtgt tattgcggca caatctatcg gtgagccggg tacacagtta acgatgcgta
    10921 cgttccatat cggtggtgcg gcttctgcgg cagcaaaaga atctagcatc caagtgaaaa
    10981 acgcaggtac gattaaatta accaacgcta aatttgtaac caacaaagaa ggcaaaatcg
    11041 tattaacttc tcgtaatact gaattaactg tcatcgacac cttcggtcgt accaaagaaa
    11101 actataaagt gccttatggt gcggtgcttt ctaaacacga cggtgcagaa gtggctgtgg
    11161 gtgaagtggt tgcgaactgg gatccgcaca caatgccggt aatctcagag gtatcaggtc
    11221 gtatccaatt tagcgacatc gtagatggct taaccgttac tcgccaaacc gatgaattaa
    11281 ccggtttatc atctatcgtg gtgcaagatg tgggtgaacg tgcaaccgca ggtaaagatt
    11341 tacgtccggc attacgctta gttgatagca acggcaaaga catcttaatt ccgggtacag
    11401 acgttgcagc acaatacttc ttaccgggta aagcaatcgt aaccttagac gatggtgcag
    11461 aaattgaagt cggtgaagcc ttagcccgta ttccacaaga atctgtgggg acgaaagata
    11521 ttaccggtgg tcttccacgc gtagcagact tattcgaagc ccgtaaaccg aaagagccgg
    11581 caatcttggc ggaaatttca ggtattgtgt cgttcggtaa agaaaccaaa ggtaaacgcc
    11641 gcttggtaat tactccggcg gaaggcgaag cgtttgaaga gatgattcca aaatggcgtc
    11701 agctcaacgt atttgaaggc gagatggtac aacgtggtga tgtgatatca gacggtgcag
    11761 aaactccgca cgacatctta cgcttacgtg gcgttcacgc cgttaccgac tacatcgtaa
    11821 acgaagtgca agaagtttac cgcttacaag gggtaaaaat taacgacaag cacatcgaag
    11881 tgattgttcg ccaaatgttg cgtaaagctg tgatcaccaa cgcttacgac tctgaattct
    11941 tagagggcga acaagtggaa gtggctcgtg tgaaaattgc caaccgcaaa cgtgctgaag
    12001 aaggcaaacc gttggtagaa tttgaacgtg aattgcttgg tattaccaaa gcatctcttg
    12061 caacagaaag ctttatttct gcagcctcgt tccaagaaac cactcgagtg cttaccgaag
    12121 ccgcagtggc aggtaaacaa gatgaattgc gtggcttaaa agagaacgta atcgttggtc
    12181 gcttaatccc ggcaggtacc ggttttgctt accaccaagc acgagctaaa aaacgtgccc
    12241 aactggaagc aggaattgca gttgtccctg aatttgaagc accggcagct aaagccaatt
    12301 cattcgttac cgatgcagac atcgaagctg aatttgaatt tgttgcagac gatgcaaccc
    12361 aaagtttagc agcgttgtta aatgcgggtg aggaagagta atagctcgta gggtatgata
    12421 aattaaaaaa tctcctagaa tataatttct aggaggtttt ctacttgaat ataagggaaa
    12481 aatatataga atgtaagggc ttattcaatt tgtggataag gtaatcaaca gtatgtcaat
    12541 agttgataac atttcataaa gcgt
//
LOCUS       DANLZD010000079        12286 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.079, whole genome shotgun sequence.
ACCESSION   DANLZD010000079 DANLZD010000000
VERSION     DANLZD010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12286)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12286)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12286
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.079"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(52..1092)
                     /locus_tag="PXE26_001593"
     CDS             complement(52..1092)
                     /locus_tag="PXE26_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5594163.1"
                     /translation="MQTTLSPQQIAKKHRTIEKKRSFLLLFFLLICLLSLIFDIMTGP
                     SLLPFNEVWKALFQLGEIEETTKVIVYELRLPMAIMALVVGAALGVGGAEIQTLLNNP
                     MASPYTLGLAAAAGFGASIVIAFGGFGLPTEISVPVGAFVMTLFSSAILFAFSSLGRF
                     SSAILVLVGIALLFLFQSLLSLVQFISAPEVSQQILFWLFGNLTKATWQTISIAFGVT
                     TVCILLLFKDAWKLTALRLGEARALSLGINLTWLRMKTLLIVSVMTATCISFVGIIGF
                     IGLVAPHIARMLLGEDQRFFLPGSMLVGAAFLSMSSVLSKSLVPGALFPVGIITALVG
                     VQFFFWIVLAKR"
     gene            complement(1181..1771)
                     /locus_tag="PXE26_001594"
     CDS             complement(1181..1771)
                     /locus_tag="PXE26_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein phosphodiesterase"
                     /protein_id="HDL5594164.1"
                     /translation="MNFLTHSLISLEIDTQTKQQTLYGNFAGDFYKGLIPHLNLADNL
                     KSGVVLHRSIDKISDRPDSLTTQLLQGTFGRYKGIVSDIMIDHFLAKHFQRLFAKDLN
                     EVQAQIFQQIEQQRTIFPEQFVPMFNWLQSRKALTHYADLDFLEQVFLGMSSRVKKGE
                     ILRNAVTEIWQNYTLLEEAAIQEFFTVKDRATRELS"
     gene            complement(1772..3145)
                     /gene="modF"
                     /locus_tag="PXE26_001595"
     CDS             complement(1772..3145)
                     /gene="modF"
                     /locus_tag="PXE26_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter ATP-binding protein
                     ModF"
                     /protein_id="HDL5594165.1"
                     /translation="MVVDGNGSGKTTFSLALQGKISLYSGDYGNSFQHIQLLSFEQQQ
                     KMLEQIFKDRNNDSVSPDDFGLTARQVILNGSPKEALCEEYAHKLHIQHLLERPFMHL
                     STGESRKVLFCQMLVSEPDLFILDEPFEGLDQQSVQYWQQLIAELQSKMALVLIVNRF
                     NDIPDAANHIELLDNLSLILQGERAEIEQQAVYSQLKFAEENVNVPLPDSAAPLLSLP
                     ENINPFELENVNIQYGEKKILDNLSWTVQPKQHWWIKGPNGAGKSTLLSIITGDHPQS
                     YANKVRLFGKQRGSGETIWDIKKNIGYVSSQLHMDYRVNCSAMEVILSGFFDSIGVYQ
                     QVPNALQLKAMEWLERLNLSNVAKKPFRSLSWGQQRLLLITRAMVKHPSILILDEPLQ
                     GLDGINRKLVKQFIEQLVTNSQTQLLFVSHQDSDAPNCITHLFEFVPKGETNEFGFEY
                     HQTALGA"
     gene            complement(3263..4216)
                     /gene="fmt"
                     /locus_tag="PXE26_001596"
     CDS             complement(3263..4216)
                     /gene="fmt"
                     /locus_tag="PXE26_001596"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HDL5594166.1"
                     /translation="MSKLNIIFAGTPDFAAQHLQALLDSEHNVIAVYTQPDKPAGRGK
                     KLQASPVKQLAEAHNIPVYQPKSLRKEEAQAELKALNADVMVVVAYGLILPEAVLNAP
                     KYGCLNVHGSLLPRWRGAAPIQRSIWAGDTETGVTIMLMDVGLDTGDMLHKVTTPIEP
                     NETSASLYAKLAELAPLALLEVLNGLANHTFKAEKQDEALSNYAEKLSKEEAKLDWQL
                     PAVQLERNIRAFNPWPFSFLTLTVDGVEQSIKIHQATVLPHQEKAAGTVINVDKTGIQ
                     IATQQGVLNITQLQPAGKKPMSVQDFLNGRADWFVSGTQLS"
     gene            4331..4942
                     /locus_tag="PXE26_001597"
     CDS             4331..4942
                     /locus_tag="PXE26_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HDL5594167.1"
                     /translation="MEFFIPKADTIFEEEIKKSRFITYLRHTEGMEQAKAFWQELKIQ
                     HPHARHWCWATVAGLPNDSQQYGFSDDGEPSGTAGKPMLNYLLGSGLGEITAVVVRYY
                     GGIQLGTGGLVKAYGNGVQQALLQLERIRKVLRKNYRLQCEYEQFNTISHLISEKDIV
                     IVEQLFSDKVDLLLAFNPSEVEAFADELTQRFSGKLALIKEEI"
     gene            4946..6430
                     /locus_tag="PXE26_001598"
     CDS             4946..6430
                     /locus_tag="PXE26_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter"
                     /protein_id="HDL5594168.1"
                     /translation="MQFFSIIRIVGILVMCFSFTMLVPATVALIYGDGGGRAFLEAFA
                     LNFMVGTLLWWLCRDNKNELRSREGFLIVVLFWVVLGLLGAVPFIILENPDLNVAESI
                     FESFSGLTTTGATVITGLDSLPKAILFYRQFLQWLGGMGIIVLAVAIIPLLGIGGMQL
                     YRAEMPGPLKEQKMRPRIAETAKALWLIYLSLTILCAVAFWLAGMTVFDAISHSFSTV
                     SIGGFSTHDASIGYFNNAAISYITVFFLLLSACNFALHFAVIDRIRDAQSRKKGGILS
                     RLYWGDYEFRFFLMVQLGLFLVCTLVLVGYGYFDNTSVTIEQALFQSVSISTTAGFTT
                     NDFSQWSSFLPTLLVLSSFIGGCAGSTGGGLKVIRVLLLYLQSKREIHRYIHPNVIQP
                     IKLGNHVLSERVVDGIWAFFSAYFFVFVICWLATIACGMETFDALNAVIASLNNLGPA
                     LGSVSSNFTQVPDSAKLVLTFAMVCGRLEVFTLLVILSPVFWKD"
     gene            6431..6958
                     /gene="hemG"
                     /locus_tag="PXE26_001599"
     CDS             6431..6958
                     /gene="hemG"
                     /locus_tag="PXE26_001599"
                     /EC_number="1.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone-dependent protoporphyrinogen IX
                     dehydrogenase"
                     /protein_id="HDL5594169.1"
                     /translation="MKTLILYFTTDGQTKKIAERLADVITHEVELISLKDQAVDFAEK
                     IANADQIVIGASIRYGHFNPLVYQFVEQHYPALNAKKTAFYGVNLTARKDNRNTPETN
                     TYVRKFLAKVKWKPTHIEVIAGALLYLRYKPFDRLMIRFIMKITKGETDTSKEYEYTD
                     WQQVENFGKLLANQL"
     gene            7090..7485
                     /gene="mscL"
                     /locus_tag="PXE26_001600"
     CDS             7090..7485
                     /gene="mscL"
                     /locus_tag="PXE26_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HDL5594170.1"
                     /translation="MSILKEFREFAVKGNVVDMAVGVIIGGAFGKIVSSLVSDVVMPP
                     IGWLIGGVDFKDLAIEIAPAKEGAEAVMLKYGAFIQNVFDFLIIALAVFGMVKVINSL
                     KKAPVVEEAPAEPTAEEKLLTEIRDLLKK"
     gene            complement(7598..7861)
                     /gene="rpsT"
                     /locus_tag="PXE26_001601"
     CDS             complement(7598..7861)
                     /gene="rpsT"
                     /locus_tag="PXE26_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HDL5594171.1"
                     /translation="MANIKSAKKRAVQSEKRRQHNASQRSMMRTFIKKVYAAVAAGDK
                     AAAQTAFVEMQKVVDRMASKNLIHANKAANHKSKLAAQIKKLA"
     gene            8125..9699
                     /gene="murJ"
                     /locus_tag="PXE26_001602"
     CDS             8125..9699
                     /gene="murJ"
                     /locus_tag="PXE26_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HDL5594172.1"
                     /translation="MSKKLLRSGMIVSFMTLISRILGLIRDIVVATILGTGVSADIFL
                     FANRIPNFLRRLFAEGAFSKAFVPVLAEYNADNDPNKTREFIAKVSGTLGGLVTVVTL
                     VAMIASPVVAALFGTGWFLDWLYDGPNAEKFTQASFLLKITFPYLWFITFVALSGAVL
                     NTIGKFGVMAFSPVLLNVAIIAVALWGRDYFDSPDIALAWGVFLGGLLQFLFQIPFMK
                     KEGLLVKPKWAWKDEGVTKVRKLMIPALFGVSVTQLNLLLNQVIASFLITGSISWMYY
                     ADRLIEFPLGLFGIAISTVVLPSLSRIAKNKELTEIQRGEHFQNTMDWGVRMVLLLGI
                     PAMIGMAVLAQPIIMTMFMRGKFGFEDVLATSYPLWVMCLGLNSYMLISVLANGFYAN
                     QNTKTPVKVGIIAALSNICFGLAFAPFLGYIGLALASACSALVNVSLLYVNLSKNGYY
                     KVSHKTVLFVLKLFIAACVMGALVAYFTPEIELWALMTMWQKVYWLIWLMILAGGSYF
                     ASILVLGIRKKDFRSA"
     gene            9701..10168
                     /locus_tag="PXE26_001603"
     CDS             9701..10168
                     /locus_tag="PXE26_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HDL5594173.1"
                     /translation="MKSLKLKIPPPAWFLLCAALMWLVAQYVPVSLPNYQHTAIFFSG
                     LAVAIIGGAVAVSALWVIHQAKTTYSPFRPQHTAKLVTWGIYRKSRNPMYLSLLLGLI
                     AWALWLGAMLAWLVLPLFVWLITYFQIKPEEQILAQKFGTHYAKYCNQVRRWL"
     gene            complement(10233..12242)
                     /locus_tag="PXE26_001604"
     CDS             complement(10233..12242)
                     /locus_tag="PXE26_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HDL5594174.1"
                     /translation="MDLIKKLNTGSTFRVPIFLPSLLFVSFVAVFCIIFPQQAQTSLD
                     TIKNSLFQHFSWFYIFAGSIFFLFLIFLSFSRLGDIKLGADTDEPEFGFGSWIAMLFA
                     AGMGIGLMYFGVAEPILHYLKPVQQNLTEPERMKEAMMTTFYHWGIHAWAIYGVIALA
                     LAYFGFRYKLALTIRSGFYPLLKHRISGFWGHLIDIIALCSTIFGLTTTLGFGVMQVS
                     AGFNNLGLIEQSNFTVLAIIVTVAMALAVLSAVSGVGKGVKILSEINLTLAGLLLIFV
                     IITGPTLLLFSSFTENLGYYFSSLLEMSFRTFAYEPEHQGWLSGWTVLYWAWWASWAP
                     FVGLFIAKISKGRTIREFILGVLFVPSLFNILWMTSFGSSAIWFDQQTAGALAEVSGN
                     TEQLLFTFFEQLPFGSIASFVAVIVISIFFITSADSGIFVLNSIASQGEENAPKWQSV
                     LWGALLAILALSLLYSGGLASLQTMTLIIALPFTFIMLILCIGLWKGLMVDNQYFNKK
                     FSQGSQHWAGKDWKQRLEKIINPSNKQDVRHFFIKVARPAFLELIEEFESYGLIAKMN
                     FTNEQNPKLEFEVVKENLRNFIYGIESVPRELSDLVVGDDNLPNIEQNTIYEPITYFL
                     DGRKGYDVQYMTKEELIADVLQQYERFINLAMDNSHDLMTADFNH"
BASE COUNT         3419 a         2452 c         2742 g         3673 t
ORIGIN      
        1 taagtttcca cgcttaatag ttacatcgtt taagttgagc atagaaaatc cttatcgttt
       61 cgccaataca atccagaaaa agaactgcac accgactaat gccgtaataa taccgaccgg
      121 aaataatgcg cccggcacaa ggctttttga tagcacggat gacatcgata aaaatgccgc
      181 acccactaac attgaaccgg gcaggaaaaa gcgttggtct tcgcctagca acattcgggc
      241 aatatgcggg gcaactaagc caataaagcc gataatgcct acaaagctaa tgcaggtggc
      301 cgtcattaca gacacaatca gcaatgtttt cattcgtaac caagttaagt taatgcctaa
      361 gctcaatgct cgagcttcgc ccaaacgcaa ggcagttaat ttccacgcat ctttgaataa
      421 taataaaata cagactgtag ttacgccaaa ggcaattgag atagtctgcc aagtagcttt
      481 agttaaatta ccgaatagcc aaaacagaat ttgttgggat acctcaggtg cagaaataaa
      541 ttgcaccaat gacagtaaag actgaaataa aaacaataag gcaattccta ccagcactaa
      601 tattgccgag ctaaaacgtc ctaaagagga aaaggcaaat aaaatggcgg aagaaaatag
      661 tgtcatcaca aaagccccga caggtacaga aatttcggtg ggtaaaccaa atccaccaaa
      721 ggcaatcaca atcgaagcac caaagccggc tgcagctgct aaacccaatg tataagggct
      781 tgccattgga ttattaagca aagtttgaat ttcagctccg ccaacaccaa gtgctgctcc
      841 aaccaccaat gccattattg ccattggtaa gcgtagctca tagacaatca ctttggtggt
      901 ttcttcaatt tcgcctaatt ggaataaggc tttccaaact tcattaaacg gaagcaggga
      961 agggcctgtc ataatatcga aaatgaggct gagtaaacaa atgagtaaga aaaagagtaa
     1021 taaaaaactg cgtttctttt caatagttcg gtgcttttta gctatttgtt ggggagagag
     1081 cgttgtttgc ataaaaatgt aatgtttgag aattattatc agacaggata agagaaaaga
     1141 tcgataaatt caagaatatc caagataccg actaaagtat tcaactaagt tctcgagtag
     1201 ccctgtcttt tacagtaaaa aactcctgaa tagcggcttc ttctaaaaga gtataattct
     1261 gccaaatttc ggttacagca tttcttaaaa tctcaccttt cttaactctt gatgacattc
     1321 ccaagaatac ctgttctaag aaatctaaat cggcataatg agttaatgct tttcgtgact
     1381 gtaaccagtt aaacatcggc acaaattgtt caggaaaaat cgtgcgttgt tgttcgattt
     1441 gctgaaagat ctgtgcttgt acctcattta aatctttagc aaataaccgt tggaaatgtt
     1501 tagcgagaaa atggtcgatc ataatatccg acacaatgcc tttataacgc ccgaatgtgc
     1561 cttggagtaa ttgggttgtg aggctgtccg gtcggtccga aatcttatca atcgagcggt
     1621 gtaacaccac accgcttttt aagttatccg ctaaattgag atgcggaatt aaacctttat
     1681 agaaatcacc ggcaaagttg ccatataggg tctgttgctt ggtttgggtg tcaatttcaa
     1741 gtgaaatcag cgaatgggta agaaaattca tttatgctcc aagtgcagtt tggtgatact
     1801 caaacccaaa ctcgttggtt tcgcctttcg gtacaaactc aaataaatgc gtaatgcaat
     1861 ttggagcatc gctgtcttgg tgcgaaacaa aaagtagttg cgtttggctg ttagtcacta
     1921 attgttcaat gaactgtttg actaatttgc ggttaatgcc gtctaaacct tgtaacggtt
     1981 cgtctagaat cagaattgat gggtgtttca ccattgctcg ggtaatcaaa agtaagcgtt
     2041 gttgccccca cgagagagag cgaaacggct ttttggcaac attgcttaaa ttgaggcgtt
     2101 ccaaccattc cattgctttt aattgcaagg cattcggcac ttgttgatac acgccgatgc
     2161 tgtcaaaaaa gccagaaaga atgacctcca ttgcggagca atttacccga taatccatat
     2221 gcaactggct gctgacatag ccgatatttt tcttaatatc ccaaatggtt tcgccacttc
     2281 cccgttgttt gccaaatagt cggactttat tggcataaga ttgtgggtga tcgccggtga
     2341 taatcgaaag caaggtcgat ttcccagctc cattcgggcc tttaatccac cagtgttgtt
     2401 taggctgaac cgtccaactt aggttatcta aaatcttctt ctccccatat tgaatattca
     2461 cattttccaa ctcaaacgga ttgatgtttt ccggcaggct gagtagcgga gctgcactat
     2521 caggcagtgg cacattgaca ttctcttctg caaattttag ctgagaatag accgcttgtt
     2581 gttcaatttc tgctcgctct ccttgcagaa ttaatgataa attatctaat aactcaatat
     2641 gattggcagc atcaggaata tcgttaaaac gatttacaat cagcactaac gccattttgc
     2701 tttgtagttc ggcaatcagt tgttgccaat attgcaccga ctgctgatcc agcccttcaa
     2761 acggttcgtc taaaatgaat aaatccggct cgctcactaa catttggcaa aatagcactt
     2821 tgcggctttc accggtggaa aggtgcataa acgggcgttc aagcagatgt tgaatatgca
     2881 atttgtgggc atattcctca cataacgcct cttttggact gccatttaaa attacttgtc
     2941 gtgcggttaa gccgaaatca tcgggcgaga cactatcgtt gttccgatct ttgaaaatct
     3001 gctccaacat tttttgttgt tgctcgaaag agaggagctg aatatgttgg aacgaattac
     3061 catagtcgcc ggaatagagc gagattttac cctgtaaagc gagtgaaaaa gttgttttgc
     3121 ctgaaccgtt tccgtctacg accacctaaa agtcattggg ttggatctgt aaggcgtcaa
     3181 tcgtgagttt atgttgttta accagtgaaa atcgggcatt ggttattgta agtgaaggct
     3241 gtgtttgcat atatttcccg ttttaactta gttgtgtccc gctgacgaac caatccgctc
     3301 gaccgtttaa gaaatcttgc accgacattg gttttttacc cgccggttga agttgggtaa
     3361 tattcagcac gccctgttgg gtggcaattt gaatcccggt tttatccaca ttaattaccg
     3421 tgccggctgc tttttcttgg tgaggtaaca ccgtggcttg gtgaattttg atactttgct
     3481 caacgccatc aacggttaag gttaaaaaac taaacggcca agggttaaaa gctcggatat
     3541 tgcgttccag ttgaactgct gggagttgcc aatccaattt agcttcttct ttggaaagtt
     3601 tctcggcgta attggacagt gcttcatctt gtttttccgc tttgaatgtg tggttggcta
     3661 aaccgtttaa cacctcaagc aatgccagag gggcaagttc tgccagtttg gcatacaagg
     3721 aggcggaggt ttcattcggc tcaatcgggg ttgtgacttt atgtaacata tcaccggtgt
     3781 ctaagccaac gtccattagc ataatggtta cgccggtttc tgtatcacct gcccaaatcg
     3841 aacgctgaat cggagctgct ccacgccagc gaggtagtag cgaaccgtgt acgtttaggc
     3901 aaccatattt aggagcattc aatactgctt caggtagaat taagccgtaa gctaccacca
     3961 ccatcacatc ggcatttagg gctttcagtt cagcttgagc ctcttcctta cgcagggatt
     4021 tgggttggta aacaggaatg ttgtgagctt cggccagctg ttttaccggg ctggcttgca
     4081 gttttttgcc tcgcccggca ggtttatccg gctgagtata aaccgcaatc acgttatgct
     4141 cggaatctaa taaggcttgt aaatgttgag cggcaaaatc aggcgtgccg gcaaaaataa
     4201 tattgagttt tgacatattt tttattcgtt caagttatca atgaaagact tattaaacca
     4261 ttaaacagca caaataaaaa gtggcttgaa tatggtatca ttgccacatt caagataaga
     4321 gaatcaaaca atggaatttt ttatccccaa agcggataca atttttgaag aagagattaa
     4381 aaaaagccga tttatcacct accttcgcca tactgagggt atggagcagg ccaaggcatt
     4441 ttggcaggag ctgaaaattc agcatccgca cgcacgccat tggtgttggg caacggtggc
     4501 aggcttgccg aatgattcgc aacaatacgg cttttcggat gatggagaac cgtctggtac
     4561 agcaggtaag ccaatgctca attatttgct tgggtcaggc ttgggggaaa ttacagcggt
     4621 ggtggttcgc tactacggtg gtatccagct tggcaccggc ggcttggtga aagcctatgg
     4681 caatggggtg caacaggcgt tattgcagtt ggagcggatt cgcaaagttt tgcgaaaaaa
     4741 ctaccgcttg caatgtgaat atgagcagtt taataccatt tctcatctca ttagcgagaa
     4801 agatattgtg attgtcgagc aactttttag cgataaagtg gatttgttgc tggcatttaa
     4861 cccgagcgag gttgaggcct ttgcagatga attaacccaa cgcttttcgg gcaagctcgc
     4921 attaataaaa gaagaaatct agtctatgca atttttttcc attattcgta ttgttggcat
     4981 tttggtgatg tgtttttcat tcacaatgct tgtgccggca acggtcgccc taatttatgg
     5041 cgatggcggt gggcgggcgt ttttagaagc cttcgctctg aattttatgg tcggtacgct
     5101 gctttggtgg ctgtgccgtg acaacaaaaa cgagctacgt tcccgtgagg gctttttgat
     5161 tgtagtactg ttttgggtgg tgctgggttt gctcggggct gtgcctttta ttattttgga
     5221 aaaccccgat ttaaacgtgg cggaatccat ttttgaatcc ttttccggct taactacaac
     5281 gggtgcaacc gtcatcaccg gcttagatag cttgcccaaa gcgattttat tctaccgcca
     5341 atttttgcaa tggctagggg gaatggggat cattgtgtta gcggttgcga ttattccgct
     5401 gttaggcatt ggtggaatgc aactttatcg tgcggaaatg cccggaccgc tcaaagagca
     5461 gaaaatgcga cctcgcattg cggaaacggc aaaagcgttg tggctgattt atctcagcct
     5521 gacgattctg tgtgcggtcg cattttggct cgccggaatg acggtgtttg atgccatttc
     5581 gcatagcttt tccacggttt cgattggcgg attttctacc cacgatgcca gcatcggcta
     5641 ttttaataat gcggcaatta gctatattac cgtgtttttc ctgctacttt ctgcctgcaa
     5701 ctttgcattg cattttgcgg tgattgatcg catacgagat gcacaatcac gcaaaaaagg
     5761 gggtatttta agccgcttgt attggggcga ttacgagttt cgttttttct tgatggtgca
     5821 gttagggctt ttcttggttt gtaccttggt gttagtgggt tacggttatt tcgataatac
     5881 ctctgttacg attgagcaag cgttgtttca atcggtgtcc atttccacca cggccggctt
     5941 tactaccaat gattttagcc aatggagttc gtttttaccc acgctgttgg tgctgtcttc
     6001 atttatcggt ggttgtgccg gctcaaccgg tggcggcttg aaagtgattc gggtgttgct
     6061 gctttattta caaagtaaac gtgaaatcca ccgctacatt caccccaatg tgattcaacc
     6121 gattaaatta ggcaaccacg ttttatcgga acgggtggtt gatggtattt gggcgttttt
     6181 ctcggcgtac tttttcgtgt tcgtgatctg ctggcttgct accatcgctt gtggaatgga
     6241 aacctttgat gctctaaatg cggtaattgc ctcactaaat aatctaggtc ctgcattagg
     6301 gagcgtgagc agcaatttca cccaagtgcc ggacagtgcc aagttagtgc tgacttttgc
     6361 aatggtatgc ggacgtctgg aagtgtttac cttgctggtg attttaagcc ctgttttttg
     6421 gaaagattaa atgaaaacct taattctcta ttttacgacc gatggtcaaa ccaaaaaaat
     6481 tgccgaacga ttggcggacg tgattactca cgaagtcgag ctgatttcgc taaaagatca
     6541 agcggtcgat tttgccgaaa aaattgcaaa tgccgaccaa attgtcatcg gtgcttcaat
     6601 tcgctatggg cattttaacc cgttggttta tcagtttgtg gaacagcatt atccggcatt
     6661 aaacgccaag aaaactgcct tttacggtgt gaatttgacc gctcgcaaag ataatcgaaa
     6721 cacgcctgaa accaatactt atgtgcgtaa atttttagct aaagtgaaat ggaaaccaac
     6781 ccacattgag gtaattgctg gggcattact ttacctacgc tataagccat tcgaccgatt
     6841 gatgattcgc tttattatga aaattaccaa aggcgaaacc gatacctcca aagaatatga
     6901 gtacaccgat tggcagcagg tggagaattt tggcaaatta ttagccaatc agttataatc
     6961 aaactgatct aaatcaaaaa aatgtaaatt tatttaaatg ttgtagaaat tttaaagatt
     7021 ttgattataa tcgccagccc acgttcttgc gaagaccgtg tttaatcatt gaatgaaagg
     7081 aaagccccct tgagtatttt aaaagagttc cgtgaatttg cggtaaaagg taatgttgtt
     7141 gatatggctg tcggtgtgat tatcggcggt gcattcggta aaattgtttc ttcattagtt
     7201 agcgatgttg taatgccacc tatcggttgg ttaatcggtg gcgtggattt caaagattta
     7261 gccattgaaa tcgccccggc aaaagaaggt gcggaagcag tgatgttaaa atacggtgca
     7321 tttatccaaa acgtatttga tttcttaatt atcgcacttg cggtattcgg tatggtgaaa
     7381 gtgattaact cactgaaaaa agctccagtt gtagaagaag ctcctgcaga gccaacagcg
     7441 gaagagaaat tattaactga aatccgtgat ttattgaaaa aataattaac tgattttgaa
     7501 acaagggcta ttttagaata tctagaatag ccctttgtgt tatggttaaa aagaaaaaaa
     7561 ccaacataaa gtcggttttt ttcatatctg ttcgatatta cgctaatttt ttgatttgcg
     7621 ctgctaattt agatttgtgg ttagccgctt tgttagcgtg gattaagttt ttagatgcca
     7681 tacggtctac aactttttgc atttcaacga aagccgtttg agctgctgct ttatcgcctg
     7741 ctgctactgc tgcatatact tttttgatga atgtacgcat cattgagcgt tggcttgcgt
     7801 tgtgttggcg gcgtttttca gattgaaccg cacgtttttt tgctgacttg atattagcca
     7861 aggtcaaact cctaaaatat ctgtgtaaaa attagatata aacaaaatcg ttgtttatat
     7921 tgcctatcga tagtttttaa ttcattttca acgagacacg tgcttgaaaa taacaccgtt
     7981 tttctgatag aaaacgatag ggcgagattt taacagtttt tttctgattt tcctataaca
     8041 aactgctaaa attatgatcg atttttagga tcagactaca agcggtctga tttttcaata
     8101 attttactaa tattactctt tattatgagc aaaaaacttt taagatcagg aatgatcgta
     8161 agctttatga ccttaatttc tcgcatactc ggtttgattc gagacattgt ggtggcaacc
     8221 attttaggca caggcgtgag tgccgatatt ttcctgtttg ccaaccgtat tcccaatttt
     8281 cttcgccgtt tgtttgccga aggggcattt tctaaagcct ttgtgccggt gttggcggaa
     8341 tataatgcgg ataacgatcc aaacaaaacg agagaattta ttgccaaagt atcgggtaca
     8401 ttaggaggtt tggtaactgt tgttaccctt gtggcaatga ttgcctcgcc tgtggttgcc
     8461 gctctttttg gtacaggttg gtttttagat tggctttacg acgggccaaa tgccgaaaaa
     8521 ttcacccaag cctctttttt gctcaaaatc actttccctt atttgtggtt tattaccttt
     8581 gtggcgttat ccggtgcggt gttaaatacc atcggtaagt ttggggtgat ggcattttcc
     8641 ccggtgttgc tgaatgtggc gattatcgcg gtagcgttat ggggcagaga ttatttcgat
     8701 tccccggata ttgccttagc gtggggggta tttttaggcg gcttattgca atttttattc
     8761 caaattccat ttatgaaaaa agagggctta ctggttaagc caaaatgggc gtggaaagac
     8821 gaaggtgtca ctaaagtccg taaattaatg attccggctt tatttggcgt ttccgttacc
     8881 cagctaaatt tactgctaaa ccaagtgatt gcctcgtttt tgattaccgg ctcgattagt
     8941 tggatgtatt atgccgaccg cttaattgaa tttccgctcg gtttatttgg aattgcgatt
     9001 tccaccgtcg tgctgccaag cctttcccgt attgcgaaaa acaaagaact cactgaaatc
     9061 caacgtggag aacactttca aaacacaatg gattgggggg tgagaatggt gctgttgctc
     9121 ggcattccgg caatgatcgg tatggcagtg ctggctcagc cgattattat gacaatgttt
     9181 atgcggggta aatttggttt tgaagatgtg ctggcaacct cttatccact ttgggtaatg
     9241 tgcttggggt taaacagcta tatgttgatt agcgtgctgg caaacggttt ttatgccaac
     9301 caaaacacca aaacaccggt aaaagttggg attattgccg ccttaagtaa tatttgcttt
     9361 ggcttggcgt ttgctccgtt tttgggatac attggtttag cgttagcttc tgcgtgttcg
     9421 gcattagtga atgtgagctt gctgtatgtg aatctctcaa aaaatggtta ctataaagta
     9481 agccataaaa ccgtgctttt tgtgttgaaa ctattcatcg ccgcttgtgt aatgggggcg
     9541 ttggttgcct atttcacgcc tgagattgaa ctttgggcat taatgacaat gtggcagaaa
     9601 gtgtattggc tgatttggct gatgatctta gccggcggta gttattttgc ctctattttg
     9661 gtattaggca ttcgtaaaaa agatttccgc tcggcataaa atgaaatcat taaaactgaa
     9721 aatcccgccg ccggcttggt tcttgctttg tgccgcttta atgtggctgg tagctcaata
     9781 tgtgccggtg agcttgccga attatcagca tacagccata ttttttagcg gtttagctgt
     9841 ggcgataatt ggcggagcgg ttgccgtctc ggcactttgg gtcatacacc aagcgaaaac
     9901 gacatacagt ccttttcgac cacaacatac cgctaaattg gtcacttggg gcatttaccg
     9961 caaaagccga aacccaatgt atctttcgtt actattaggt ttgattgcgt gggcattatg
    10021 gttgggggca atgttggcgt ggctggtttt accgctgttt gtatggttga taacctattt
    10081 ccaaatcaag ccggaagagc aaattttagc ccaaaaattc ggcacacatt atgccaaata
    10141 ttgcaaccaa gtaaggcgtt ggctttaaat gcaagcggtg agattttgtt ggaaatttgc
    10201 aaatttttcc gaaaatctca ccgcttgtgg ggttagtgat tgaaatcagc cgtcattaag
    10261 tcgtgcgagt tgtccatcgc taaattgata aagcgttcat actgttgcag cacgtcggca
    10321 atcaactctt ctttggtcat atattgcaca tcataacctt tccgcccgtc taagaaataa
    10381 gtaatcggct cgtaaatggt attttgctca atgttcggta ggttgtcgtc acctaccacc
    10441 aaatccgata attcccgtgg cacactttca atgccgtaaa tgaaattgcg taaattttct
    10501 ttcaccactt caaactctaa tttcgggttt tgttcgttgg tgaaattcat tttagcgatt
    10561 aagccatagc tttcaaattc ctcgataagt tctaaaaatg ctggtctggc aactttaata
    10621 aagaagtgac ggacatcttg cttattgctt gggttgatga ttttctccaa gcgttgtttc
    10681 caatctttac ccgcccaatg ttggctacct tgcgagaatt ttttgttgaa gtattggtta
    10741 tctaccatta atcctttcca taagccgata cagagaatca gcataatgaa ggtaaatggt
    10801 aaggcgataa tcagtgtcat tgtttgcaga gaagccaagc cacccgaata gagtagtgat
    10861 aacgctaaga tggctaataa tgctccccaa agcacgcttt gccatttcgg tgcattttct
    10921 tcgccttgtg aagcaatgct gttgagaaca aaaatccccg agtcggcaga ggtgataaag
    10981 aaaatactga taacaatgac ggcaacgaaa gaggcaatag agccaaacgg taattgctca
    11041 aaaaaggtaa ataacagttg ttcggtattg ccgctgactt cagctaaagc accggcagtt
    11101 tgttgatcga accaaatggc agagctgccg aagctggtca tccataaaat gttaaacagc
    11161 gatggaacaa atagcacccc taaaataaat tcacgaatgg ttctgccttt agagatcttg
    11221 gcaataaaca aaccaacaaa tggcgcccaa gatgcccacc atgcccaata aaggaccgtc
    11281 cagccgctta gccagccttg atgttccggt tcataagcga aggtacggaa actcatctca
    11341 agcagcgagc taaaataata gcctaaattt tcggtgaagc ttgagaaaag taatagagtt
    11401 gggccggtga ttatcacaaa aataagtagc aatccggcta atgtgagatt gatttcactt
    11461 aagattttaa cccctttgcc tacgcccgaa acggcagata acacggcaag agccattgct
    11521 actgttacga taatcgcaag aacagtaaaa ttgctctgtt caattaaacc tagattgtta
    11581 aagccagcac tgacctgcat caccccaaag ccaagtgtag tcgttaaacc gaaaatcgtg
    11641 ctacaaaggg caataatatc aattaaatgc ccccagaagc ctgaaatacg atgttttagt
    11701 aagggataaa atccggaacg aatagtgagt gctaacttat atctgaagcc aaaataagca
    11761 agagctaagg caatcacacc ataaattgcc caagcgtgaa taccccaatg atagaacgtt
    11821 gtcatcatcg cttctttcat acgctccggc tcagttaaat tttgttggac gggtttaagg
    11881 taatgcaaaa taggttctgc taccccaaaa tacattaacc cgatccccat tccggcggcg
    11941 aataacatcg caatccaaga gccaaaacca aattcaggct catcggtatc tgcccctaat
    12001 ttaatatcac ccaatcggct gaaagagaga aaaattagaa acaggaaaaa gatagagcct
    12061 gcaaaaatat agaaccagct aaaatgttgg aagagactat ttttgatggt atcaagtgag
    12121 gtttgtgctt gctgtggaaa gatgatacag aaaacggcaa caaagctgac aaagagtaaa
    12181 ctcggtagga aaatcggtac cctaaaggta cttcctgtgt ttaatttttt gattaaatcc
    12241 aatgctattt cctctatttt tgaatggtta gaggcttgaa tatagc
//
LOCUS       DANLZD010000080        12237 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.080, whole genome shotgun sequence.
ACCESSION   DANLZD010000080 DANLZD010000000
VERSION     DANLZD010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12237
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.080"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            55..2145
                     /locus_tag="PXE26_001605"
     CDS             55..2145
                     /locus_tag="PXE26_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HDL5594175.1"
                     /translation="MLSYLVFFSKIIKIPNLKGFLPHCEIRRRPLVGKTFIAQKRPNQ
                     IIGWGLRPSAVGSRAYAQKHQLPYIALEDGFLRSLGLGVKGYPPFSLVYDDIGIYYDT
                     TCPSRLEKLLLEKPLQDQEQIKLAERALSQILTYGLSKYNHALDFSEIPSAKEKIVLV
                     IDQTFGDMAVKYGQASEVDFNKMLETAISENPEAQIWVKTHPDVLSGKKKGYLTDLPQ
                     YTDRVRIITEDVNPASLIKLCEKVYCVTSQMGFEALLLGKKVVTFGVPWFAGWGVTDD
                     RNEAVQLLVQQNRRKDRSLLQLFYAAYFDYSRYINPNTGEKGSIFDVIDYLYKAKRLN
                     QRLSGNLYCIGMSLWKQAVIKPFFNLPQCRLHFVRSLNSLKKRPLADNAKILVWSNGK
                     ADVLQFAQQNNIPLLRMEDGFIRSVGLGANLVAPLSLVVDDLGIYFNAENTSRLEQIL
                     LSAEHFSETDLSYAETLRQKLVASHIGKYNVGGGDVKFNAQGKKIILVPGQVEDDASI
                     KSGSPQIKRNLDLLKKVRELNPSAYIIYKPHPDVVSGNRVGQIPTAETRRFADQMVDN
                     ANILDCILIADEVHTMTSLAGFEALLRGKKVHCYGLPFYAGWGLTEDRLKSARRGKSL
                     TLSQLIAATLIYYPLYVDPISRQFIDANQAIHILSQQKRNLTNQRIKRSWVSKQYGKL
                     QHLYRAFKYASHTK"
     gene            2168..3400
                     /locus_tag="PXE26_001606"
     CDS             2168..3400
                     /locus_tag="PXE26_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL5594176.1"
                     /translation="MEHYLDELIINSQRILLLQGPIGSFFTEFARWLESEQKEVFKLN
                     FNGGDEYFYPNNSPNTFPYYDSLDNFEAYLIQFCQTHQIDNILCFGDNRYYHKVAKNV
                     CLKLKLVFWAFEEGYFRPEYITLEKWGVNAFSPIPKNHTFFLPYAELPVVSEPEKVSK
                     GFRCMAGKAIPYYWNAYKKRKAYAKYQHHRFLNLKYYLNLWTRSGIKRICYWLHDKGF
                     AKRVEKGEFGEFFIVPLQVYDDTQVRIHSEQKSVERFLREVLNSFAKFAPAHLNLIIK
                     HHPMDRGFIDYKMVIYEFLEQYPQLNGRVFYIHDVPLPVFLRYGKGMVTLNSTSGLSA
                     LLHNMPVKTLGRANYDFEGLTDKQPLDTFWANPQPPNSEVFKGYRQFHLHKTHINGNF
                     YHKSILRYPYNWENEAHR"
     gene            3481..4542
                     /locus_tag="PXE26_001607"
     CDS             3481..4542
                     /locus_tag="PXE26_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5594177.1"
                     /translation="MAIYAIWNNKGGVGKSYLTFQIACEYAKQYPAKKVLVVDLCPQA
                     NSSSMLLGGIEKGEQELAKIHSQVNKNTISGYISERLVSPYRSINSATKYVTQVSTIN
                     EYVPKNVYLVVGDEELEIQSSGILHASQAVHVPDSWRLVHLWVRDLVSDIQNAWDNDD
                     NVVFIDCNPSFTIYTELALAASDRLIIPFSADGSSKRAVKSVLSLVYGVKRHSGDVSS
                     HFYTESQKSKLALPQIYMYVGNRLTINAKASATAFKTVVEEIGDEIYNIWKTNANLFC
                     IHPAGVGTPTNKSSFRKMFQYEVRDANTASVVSGALGIPISRLSSGKRDVLGKNVMVN
                     QSQLDAQVPNIQNLVQCIE"
     gene            4694..6346
                     /locus_tag="PXE26_001608"
     CDS             4694..6346
                     /locus_tag="PXE26_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HDL5594178.1"
                     /translation="MTIFQVAQNWLAQDPDAETRAELEQLIQAAESDEKAKAELTARF
                     DGRLQFGTAGLRGRLQAGSMGMNRVLVAQAASGLAGFIKGYDKEPSIVIGYDGRKNSD
                     VFARDTAEIMAAAGIKTYLLPRKLPTPVLAYAIQYFDTTAGVMVTASHNPPEDNGYKV
                     YLGKANGGGQIVSPADKEIAALIDKVAAGDIRDLPRSQDFTVLDDEVVNAYIEKTASL
                     AKRPKAEINYVYTAMHGVGYEVLSKTLEKAGLPQPYLVSEQIQPDGSFPTVNFPNPEE
                     KGALDLAIKLAKEKNAEFIIANDPDADRLAVAVPDAQGNWKPLHGNVIGCFLGWYLAK
                     QFHAQGKQGVLACSLVSSPALAEIAKKYGLSSEETLTGFKYIGKVENLLFGFEEALGY
                     LVDPDKVRDKDGISAAIMFLDLVCSLKQEGKTLADYTTEFVQEFGAYVSGQISIRVCD
                     LAEIGKLMTALRNNPPSEIGGFKVAEFIDHTKTTRQNDILVFVLENGSRLIARPSGTE
                     PKIKFYLDARGTDAENAEQVLAQFDESVRSLLRQEEYGKQDC"
     gene            6399..7333
                     /locus_tag="PXE26_001609"
                     /pseudo
     CDS             6399..7333
                     /locus_tag="PXE26_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250489.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
     gene            complement(7355..9436)
                     /gene="recG"
                     /locus_tag="PXE26_001610"
     CDS             complement(7355..9436)
                     /gene="recG"
                     /locus_tag="PXE26_001610"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HDL5594179.1"
                     /translation="MSEQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPMRY
                     EDRTRITPIADVRPESFATIEGYVQLTEVQFGKRPILSVTLSDSTSKIMLKFFNFNAG
                     MKNSLATGVRVKAFGEIKRGRFMAEIHHPEYQIIRDNQPLVLAETLTPIYSTTEGLKQ
                     ASLRKLTEQALALLEKVKVAELLPDEYNPHKYSLKEALQLLHRPPPTISAEVLEKGDH
                     PAQKRLIFEELLAHNLAMQQLRLGVKQQYAEALTYQTDIKQRFLDSLPFKPTHAQSRV
                     TADIEQDLAKPHPMMRLVQGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHA
                     NNFANWLNPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDNVEFHHLA
                     LVIIDEQHRFGVHQRLTLREKGAKENNYPHQLIMTATPIPRTLAMTVYADLDTSIIDE
                     LPPGRTPITTVVISEDRRAEIVQRVYQVCKQEHRQAYWVCTLIDESEVLEAQAAAAIA
                     EDLQRALPDLRIGLVHGRLKPQEKQAIMAEFKAANLDLLVATTVIEVGVDVPNASLMI
                     IENSERLGLAQLHQLRGRVGRGATASHCVLMYKPPLGKISSKRLQVMRDSQDGFYIAE
                     KDLEIRGTGEILGTKQTGMAEFKVADLMRDRKMIPLVQRYAKQIISENQPLAEALIKR
                     WLDNKAEYTNA"
     gene            complement(9440..9868)
                     /locus_tag="PXE26_001611"
     CDS             complement(9440..9868)
                     /locus_tag="PXE26_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HDL5594180.1"
                     /translation="MYRYLFDTNIVSELYKLRNDKMDVNVRQWLRGVNPSQTNISCIT
                     LSEIKTGILLKARKDKEQSDRLNDWFENNVLKAYQTKAFVVNNDIALLASEYHIPNKM
                     DLNDAYIAATAKYHNLILVTRNTKDFIRCDVRLFNPFETA"
     gene            complement(9868..10155)
                     /locus_tag="PXE26_001612"
     CDS             complement(9868..10155)
                     /locus_tag="PXE26_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HDL5594181.1"
                     /translation="MAITITSREFNQNASKVLKMAEKEPVFITKWGKIVNVVSSYMDY
                     QQKKPSEPSFEELFASSENEDVSDEFWQEFEQTLVEIRKSNKPRPVDFGDE"
     gene            10319..12202
                     /gene="htpG"
                     /locus_tag="PXE26_001613"
     CDS             10319..12202
                     /gene="htpG"
                     /locus_tag="PXE26_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HDL5594182.1"
                     /translation="MANNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAA
                     DKLRFKALSEPALYEGDGELRVRVSVDETLGTITIADNGIGMTREQVIDHLGTIAKSG
                     TKEFLNALGTDQAKDSQLIGQFGVGFYSSFIVADKVTVKTRAAGVPAEQGVIWESAGE
                     GDYTVADLEKKERGTEIILHLREDEKEFLNEWRLREIIGKYSDHIGLAVEIQTNEYDD
                     EGKASGQKWEKINKAQALWTRSKNEISDEEYTEFYKHLSHDFADPLIWSHNKVEGKQE
                     YTSLLYVPSKAPWDLFQREQKHGLKLYVQRVFIMDDAEVFMPNYLRFMRGLLDTNDLP
                     LNVSREILQENKVTQSLRSALTKRALQLLEKLAKDDAEKYAQFWQAFGVVLKEGVGED
                     FANKQQVAGLLRFASAQRDDSEQAVSFADYIARMKEGQKAIYFLTADSYQAAKNSPHL
                     ELFHKKGIEVLLLSDRIDEWLVSHLTEFDGKPLQSITKSDLDLGELADKQEEESQKAQ
                     QAEFGSFLERAKGYFGERVKNVVLTHRLTDTPAVVSTDSDEMTTQMAKLFAAMGQQAP
                     EVKYTFELNPDHPMVKKVADLADEAEFADWIELLFEQALLAERGTLENPTAFIKRVNK
                     LLG"
BASE COUNT         3553 a         2405 c         2745 g         3534 t
ORIGIN      
        1 tcatgttatc tgctatggta caatacataa atacgaatat gagattaatt ttttatgctt
       61 agctatttag tgttttttag taaaattata aaaatcccta atttaaaagg ttttttacct
      121 cattgtgaaa ttaggcgaag acctcttgtg ggaaaaacct ttattgctca aaaaagaccg
      181 aaccaaatca tcggctgggg gcttcgtcct tcagcggtgg gatcaagagc ttatgcacaa
      241 aaacatcaac ttccctatat tgcattagaa gacggctttt tacgctcact agggctgggt
      301 gtaaaaggct atccgccatt ttctttagtt tatgatgata taggtattta ttacgatacc
      361 acctgtcctt ctcgtttaga aaagttattg cttgaaaaac ctttacagga tcaagagcaa
      421 atcaagcttg cagagagagc attatctcaa atcttaactt acggactttc taaatataat
      481 cacgcactag attttagtga aatcccctct gccaaagaaa aaatcgtgtt agttattgac
      541 caaacctttg gtgatatggc ggtgaaatat ggtcaagcga gtgaagtgga tttcaataaa
      601 atgttggaaa cggcaatcag tgagaatcca gaggctcaaa tttgggtaaa aactcacccc
      661 gatgtattaa gtggcaagaa gaaaggctat ttgaccgatt tacctcaata tactgatagg
      721 gtcagaatta ttactgaaga tgtgaatccg gcaagtttga ttaaattgtg tgagaaagtc
      781 tattgcgtaa cttcgcaaat ggggtttgag gcattattat taggtaaaaa agtggttacc
      841 tttggtgtac cgtggtttgc cggttggggg gtaacagatg atcgtaacga agcggttcaa
      901 ctattagttc aacaaaatag acggaaagat cgttcattac tgcaactttt ttatgctgcg
      961 tattttgatt acagccgtta tattaatccg aataccggtg agaaaggctc tatttttgat
     1021 gtcatcgatt atctatataa agccaaaaga ttaaatcagc gcttaagtgg gaatctatac
     1081 tgtattggta tgtcgctatg gaaacaggcg gtaattaagc cgttttttaa tttgccacaa
     1141 tgtcgattac attttgttcg ttcgctaaat tctttaaaaa aacgaccgct tgcagataat
     1201 gcaaaaattt tagtttggag caatggcaaa gcggatgtct tgcaatttgc acagcagaat
     1261 aatattccat tgttaagaat ggaagatgga ttcattcgct ctgtcggact aggcgctaat
     1321 ttagttgcac cgctttcttt agtagtcgat gatttaggca tttattttaa tgcagagaac
     1381 acttcacgat tagaacaaat tttattgagt gcagagcatt tttctgaaac tgatttgtct
     1441 tatgctgaaa cattaaggca gaaattggtg gctagccata ttggaaaata taatgtgggc
     1501 ggtggcgatg taaaatttaa tgctcaaggt aaaaaaataa ttcttgtacc ggggcaggta
     1561 gaagatgacg cttcgatcaa atcaggttct ccacaaatta aaagaaatct ggatttactg
     1621 aaaaaagtga gggaattaaa ccctagtgcc tatattattt ataagcctca ccctgatgtg
     1681 gtaagtggta atcgagtcgg tcagattcct acggcagaaa cacgcaggtt tgcggatcag
     1741 atggtggata atgccaatat tttagattgt attttaattg cagatgaagt gcatacaatg
     1801 acatctttag ccggtttcga agcattatta agaggtaaaa aagtgcattg ctacggatta
     1861 cctttttatg ctggttgggg attgacggaa gatagattga agtcggcacg cagaggtaaa
     1921 tctttgacat tatctcagtt aattgccgca acattgatat attaccctct gtatgttgat
     1981 cctataagca ggcagtttat tgatgccaat caagcgattc atatattgtc acaacagaaa
     2041 cgaaacctaa ccaatcaaag gattaaacgt tcttgggtga gtaaacaata tggaaaatta
     2101 cagcatcttt atcgtgcgtt taaatatgct tcccacacta aataagcgta gagggtagga
     2161 aattaagatg gaacattatt tagatgagct aatcatcaat agccagagaa ttttattgtt
     2221 acaaggcccg ataggctctt ttttcactga gtttgcccgt tggttagaaa gtgagcaaaa
     2281 agaggtcttc aagttaaatt ttaatggcgg agatgaatat ttctatccaa ataatagccc
     2341 gaatactttt ccttactatg atagcttaga taattttgaa gcctatttaa ttcagttttg
     2401 ccaaactcat caaatagata atatcttatg ttttggcgat aatcgttatt atcataaagt
     2461 ggctaaaaac gtttgcttga agttaaagtt ggtcttttgg gcgtttgaag aagggtactt
     2521 taggccagaa tatattacgt tggaaaaatg gggtgtaaat gctttttctc caatccctaa
     2581 aaatcacact ttctttttgc cttatgccga gttaccagta gtcagtgaac cagaaaaagt
     2641 atctaaaggc tttagatgta tggcgggaaa agcaatcccg tactattgga atgcctataa
     2701 aaaacgtaaa gcatacgcaa aatatcagca tcatcgtttt ctgaatctca aatactacct
     2761 taatttatgg acaaggtcgg gaattaagcg aatatgttat tggttacatg ataaaggctt
     2821 tgccaagcgg gtagaaaaag gagagtttgg tgaatttttc attgtgcctc tacaagttta
     2881 tgatgacact caagtgagga ttcatagtga acaaaaaagt gtagagcgtt ttttaaggga
     2941 agttctgaat tcctttgcca aatttgcacc ggcacatctc aatttaatta ttaagcatca
     3001 cccgatggat agaggattta tagattataa aatggtgatt tatgaattct tagagcaata
     3061 tccccaatta aacggtagag ttttttatat tcacgatgtg ccgttacctg tctttttacg
     3121 ttatgggaaa ggaatggtga ctttaaattc aaccagtggg ctttctgcat tgctccataa
     3181 tatgccggtc aaaaccttag gtagagccaa ttatgatttt gagggattaa ccgataaaca
     3241 gccattagat actttttggg ctaatcctca gccacctaat tcggaagtat ttaaaggcta
     3301 cagacaattt catttacata aaacgcatat taacggtaat ttttaccata aatcgatttt
     3361 gcgttatcct tataattggg aaaatgaagc acacaggtga tggaaaatat taaaataagt
     3421 aatatcttat agctaaatta ttgtgttatt attacaccta ttgttaaaag agggggcatt
     3481 atggctattt atgcaatatg gaataataaa ggtggggttg gtaaaagtta tttaactttt
     3541 caaatcgctt gtgagtatgc aaaacaatac ccagcaaaaa aagttctcgt tgttgattta
     3601 tgtcctcaag caaattcatc atctatgcta ttaggcggca ttgaaaaagg tgagcaagag
     3661 ttagcaaaaa ttcattctca agtaaacaag aatactattt caggatatat ttcagaaaga
     3721 ttagtaagtc cttaccgttc tattaatagt gcaacgaaat atgtaactca agttagcact
     3781 ataaatgaat atgtaccaaa aaatgtttat cttgttgttg gtgatgagga attagaaatc
     3841 caatcatctg gtattttaca tgcttcccaa gctgttcatg ttcctgattc ttggcggcta
     3901 gtgcatcttt gggtgcgtga tttagtttct gatatacaga acgcttggga taatgatgat
     3961 aacgttgtat ttattgattg caatccaagt ttcactattt atactgaatt agcgttggct
     4021 gcttcagata gattgatcat ccctttttcc gctgatggtt catcaaaacg agctgttaag
     4081 tctgtattat ctctagtata tggggttaaa aggcactctg gggatgtcag ctctcatttt
     4141 tatacagaat ctcaaaagag taagttagca ttacctcaaa tttatatgta tgtaggtaat
     4201 agattaacga taaatgccaa agcatcagca accgcattta aaacagttgt agaggaaata
     4261 ggtgatgaaa tctataatat atggaaaact aatgctaatt tgttctgtat tcacccagca
     4321 ggtgttggta ctcctacaaa taaatcaagc ttcagaaaaa tgtttcagta tgaggtgaga
     4381 gatgcaaata cagcatctgt tgtttcaggt gctttaggta ttccaattag tcgcttatca
     4441 tcaggaaaaa gagatgtttt aggtaaaaat gtaatggtga atcagtcaca attagatgct
     4501 caagttccta acattcaaaa tcttgttcag tgtatagaat aaagaaaaat agcgtatatt
     4561 aagtacgcta ttttttattt ctgacaaatc tttttatttg atagctcgat cacaaaaaaa
     4621 gaaatatctc cttttaaata aaaggacttt gggctaatct aaacagagtt tttaaattac
     4681 ataggagtaa aaaatgacta ttttccaagt tgcacaaaat tggttagccc aagacccgga
     4741 tgcagagacc cgtgcggaat tagagcagtt aattcaagcg gcagaatcgg acgagaaagc
     4801 aaaagcagaa ttaacagccc gttttgacgg acgtttacag tttggtacgg ctggtttgcg
     4861 tggtcgctta caagcgggtt caatgggtat gaaccgtgtt ttggtggcac aagctgccag
     4921 cggtttagct gggtttatta aaggttatga taaagagccg tcaattgtta ttggttatga
     4981 cggtcgtaaa aattccgatg tgtttgcccg tgacaccgct gaaattatgg cagcggcagg
     5041 cattaaaacg tacctgcttc ctcgcaaatt gccaacacca gtgcttgcct atgcgattca
     5101 atattttgat accacagccg gtgtgatggt aactgccagc cacaacccac cggaagataa
     5161 cggctataaa gtttatttag gtaaagccaa cggtggcgga caaattgttt cgccggcaga
     5221 taaagaaatt gctgctctga ttgataaagt agcagcaggc gatattcgtg atttacctcg
     5281 tagccaagat ttcacggtgt tagacgatga agtggtaaat gcttatattg agaaaaccgc
     5341 ctcactagcc aaacggccaa aagccgaaat aaactacgtt tacactgcaa tgcacggtgt
     5401 gggctatgaa gtgttaagca aaacattaga aaaagccggc ttaccgcaac cgtatttagt
     5461 tagtgagcag attcagccgg acggttcgtt cccaacggtt aatttcccga acccggaaga
     5521 gaaaggggcg ttagatttag cgattaaatt ggcgaaagag aaaaatgccg aatttattat
     5581 cgccaacgac ccggatgctg accgtttagc ggtagccgtg cctgatgctc aaggcaactg
     5641 gaaaccactg catggcaatg tgatcggctg tttcttaggc tggtatttag ccaaacaatt
     5701 ccacgcacaa ggtaaacaag gcgtgttggc ttgctcgtta gtatcctctc cggcgttagc
     5761 tgaaattgcg aaaaaatatg gtttaagctc ggaagaaacc ttaaccggct ttaaatatat
     5821 cggaaaagtt gaaaacctat tatttggctt tgaagaagcc ttaggttatt tggttgaccc
     5881 agacaaagtg cgtgataaag acggcatttc cgctgccatt atgttcttag atttagtgtg
     5941 cagcctcaaa caagaaggta aaacccttgc ggattacacc accgagtttg tacaagagtt
     6001 cggggcttat gtaagcggtc aaatttcgat cagagtttgt gatttagccg aaatcggcaa
     6061 attaatgacg gcgttacgca acaatcctcc aagcgaaatt ggtggcttta aagtggctga
     6121 gtttattgac catactaaaa ccacacgcca aaatgacatt ttagtgtttg tgttggaaaa
     6181 tggcagccgt ttgattgctc gcccttcagg tactgagccg aaaattaaat tctatttaga
     6241 tgctcgtggc acagacgctg aaaacgcaga gcaagtgctg gctcagtttg acgaaagtgt
     6301 gcgttcgctg cttcgccaag aagaatacgg caaacaagat tgctaatggc attaattgag
     6361 ggggagctta ggctctccct tttttaaagg agacaataat ggctcaaaaa attattttag
     6421 attgtgatcc ggggcatgac gatgcgattg cgatgatgct cgcttggggg aatccgaata
     6481 ttgatttgtt ggcagtgact acggtggtag gtaatcaaac cttagaaaaa gtatcgcgta
     6541 atgcgttggc ggttgcggaa attgctcata tttgcaacgt tccttttgcc aaaggttgtg
     6601 ccagaccgct ggtgcgtgaa gtggaaaatg ccccggatat tcacggtgat tcgggaatgg
     6661 atgggcctgt actccctgaa tctacccgac aatttgagaa aaaacacgcc gctcaattaa
     6721 ttattgattt gataatgtcg cacccggaga aaagcattac cttagtgccg accggtgggc
     6781 aataaccaat attgctctag ctgcccgcct tgagccccgt attattgaaa gagtgaaaga
     6841 agtggtgctg atgggcggag gttatcacac cggcaactgg agtgcggtgg cagaatttaa
     6901 tattaaaatt gacccggaag ctgctcatat tgtgtttaat gccggttgga aggtgacgat
     6961 ggtcggctta gacttaactc accaagcact tgcgaccccc gatgtggttg aacgctttaa
     7021 ggcattaaac agcaaatcgg ggcagtttgt ggtggaattg ctggcgttct tcgccaaaat
     7081 gtataaacag gctcaaggct ttgatgctcc accggttcac gatgcctgtg cggtggcgta
     7141 tgtgattgac ccaagcctga ttgaagttca gcaagtgccg gtcaatattg agctaacagg
     7201 cacgcataca ctgggtatga cggtggcgga tttccgctac ccgccaaaac agtgtaatac
     7261 ttgggtagca aaaaaattag acaaatcccg cttttgggat ttggtaattg aatcggtgaa
     7321 aaacctgccg taatctaaat aacccgcttg ccggttaagc gttggtatat tccgccttgt
     7381 tgtctaacca acgcttaatt aacgcctctg caagcggttg attttcgcta ataatttgct
     7441 tggcgtaacg ttgcaccagc ggaatcattt tgcggtctcg cattaaatcc gccaccttaa
     7501 attctgccat tccggtctgt tttgtgccga gaatttcgcc tgtgcctcga atctccaaat
     7561 ctttttcggc aatgtagaaa ccgtcttggc tatcacgcat cacttgtaac cgcttgctgg
     7621 aaattttccc gagcggcggt ttgtacatta agacgcaatg cgaggcggtt gcccctcgcc
     7681 caacacgtcc acgcaactgg tggagttgag ccagcccgag tcgttcggaa ttttcgataa
     7741 tcattaggct agcattcggc acgtccactc ccacttcaat tacggtggtc gcaaccagca
     7801 aatctaaatt cgctgcctta aattccgcca taatcgcttg tttttcctgt ggtttcagcc
     7861 gtccgtgtac taacccgatg cgtaaatccg gcaaggctcg ctgtaaatct tcggcaatcg
     7921 ctgccgcggc ttgagcctcc aacacttcgc tttcatcaat cagggtgcag acccaatagg
     7981 cttggcggtg ttcttgctta cagacttggt acacccgttg gacgatttct gctcgccgat
     8041 cttcagaaat caccacagtc gtgattggcg ttctacccgg tggcagttcg tcaatgattg
     8101 aggtgtcgag gtcagcatag accgtcattg ccagcgttct cggaatgggg gtcgccgtca
     8161 taatgagctg atgcggatag ttattttctt tcgctccttt ttcccgcaag gtcagccgtt
     8221 ggtgtacgcc aaaacggtgt tgttcatcaa taatcaccaa cgctaaatgg tgaaattcca
     8281 cattgtcttg gaacagggcg tgagtgccga taatcatctg cacatcaccg tttttgattg
     8341 cctcaagttg tgcggttctc gccttgcctt tcactttacc ggcaagccag ccaacctcaa
     8401 tcccaaaggg attaagccag ttggcaaaat tattggcgtg ctgttcggca agaatttcgg
     8461 tcggtgccat taatgccacc tgcttgccgt tatcaatcgc taatagtgct gccaaggcgg
     8521 ctactaaggt tttacctgaa ccaacatcgc cttgtaccag tcgcatcatc gggtgtggtt
     8581 tggcaagatc ttgctcaata tctgcggtta ctcggctttg tgcgtgagta ggcttaaaag
     8641 gcaaactgtc gagaaaacgc tgttttatat cggtttggta agtaagtgcc tctgcatatt
     8701 gctgttttac ccctaaacgg agttgctgca tcgctaaatt gtgtgccagc agttcttcaa
     8761 aaatcagccg tttttgagca gggtggtcac ctttttccaa gacttcggca gaaatcgtcg
     8821 gcggtgggcg gtgcaataac tgcaacgctt cttttaggct gtatttgtgc ggattgtatt
     8881 catcaggcaa cagctcggcg actttcactt tctctaataa agcgagggct tgctcggtta
     8941 atttccgcag cgaggcttgt tttaacccct cagtggtgga gtaaatcggg gtcagggttt
     9001 cagccagtac aagcggttga ttatcccgaa taatttgata ttcagggtgg tgaatttccg
     9061 ccataaatcg cccacgctta atttccccaa aggcttttac ccgaacgccg gtggcaaggc
     9121 tatttttcat tccagcattg aaattgaaga atttaagcat aattttgctg gtgctgtcgg
     9181 agagtgtaac cgataaaatc gggcgtttac caaactggac ttcggtaagt tgtacatagc
     9241 cttcaatggt ggcaaagctt tccgggcgaa catcagcaat cggggtaata cgggtgcgat
     9301 cttcataccg cattggcaga tgaaacagta aatcctgcac attattaatg ccgattcgac
     9361 ttaacttttc ggaaattgcc gctcctacgc cggaaagggc ggttaatggc acgccgtcta
     9421 ataattgttc actcattatt tatgcggttt caaatgggtt aaataaacgc acatcacaac
     9481 ggataaaatc tttggtgttg cgggtgacta aaatcagatt gtggtatttg gcggttgccg
     9541 caatataagc atcatttaaa tccattttat tgggaatatg gtactctgat gccaatagag
     9601 caatgtcgtt attcaccaca aacgcttttg tttgataagc ctttaataca ttattttcaa
     9661 accaatcatt taatcggtct gattgttctt tgtctttgcg ggctttcagc aaaatacctg
     9721 ttttgatttc agataacgta atacagctga tattggtctg gctaggatta acccctctca
     9781 gccactggcg aacattgaca tccatcttgt catttcttaa cttataaagc tcggaaacta
     9841 tattggtatc aaaaaggtag cgatacatta ctcatctcca aaatcaacag gtcttggttt
     9901 attgcttttg cggatttcaa ccaatgtttg ttcaaactct tgccaaaatt catcgctcac
     9961 atcctcattt tcggaagagg cgaatagctc ttcaaagctt ggctcgctag gctttttctg
    10021 ctgataatcc atataactag acaccacatt gacgattttg ccccatttgg taataaaaac
    10081 cggctctttt tctgccattt ttaacacttt gctggcattt tgattaaatt ctctggaagt
    10141 aatggttatt gccatatcgc tctccaaaat gtagtaaaaa gatgagtgta ttttattaaa
    10201 tgtagtaata tctttcaatt aattcgctat ttggcaacag atattttgca aaaaatcttg
    10261 aaaatctgac cacttgcccc atctattccc tgttttttaa tgaataaagg aatacacaat
    10321 ggcaaataat caagaaaccc gtggcttcca gtcggaagtg aaacagttat tgcaactgat
    10381 gatccactcg ctttactcca acaaagaaat tttcctgcgt gagcttattt ccaacgcctc
    10441 tgacgccgcc gataaattgc ggtttaaagc cctttccgag ccggctttgt atgaaggtga
    10501 tggcgaactg cgtgtgcgtg tctctgttga tgaaacactc ggtacgatta cgattgccga
    10561 taacggtatc ggtatgaccc gtgagcaggt gatcgaccat ctcggtacga ttgcaaaatc
    10621 tggtaccaaa gaatttttga acgcactcgg cactgatcaa gccaaagaca gccagcttat
    10681 cgggcagttc ggcgtgggct tttactcttc tttcatcgtg gcggataaag tgacagtcaa
    10741 aacccgtgcc gccggagtgc ctgccgagca aggcgtgatt tgggaatctg ccggtgaggg
    10801 cgattacacc gttgccgatc tggagaaaaa agagcgtggc acggaaatca ttcttcactt
    10861 gcgtgaggac gaaaaagagt ttttaaacga atggcgtttg cgtgagatta tcggcaaata
    10921 ctccgaccat atcggcctgg cggtggaaat tcagaccaat gaatacgatg acgagggcaa
    10981 agcaagcggt caaaaatggg aaaaaattaa caaagctcaa gcgctttgga cacgctcaaa
    11041 aaatgagatt agtgacgagg agtacaccga attttacaaa cacctcagcc atgattttgc
    11101 cgacccgctg atttggtcgc acaataaagt cgaaggtaag caagaataca ccagcttgct
    11161 gtatgtgccg agcaaagccc cgtgggatct gttccaacgc gagcaaaaac acggcttgaa
    11221 actctacgtt cagcgtgtat ttattatgga cgatgcggaa gtctttatgc cgaactactt
    11281 gcgttttatg cgtggcttgc tcgacaccaa cgacctgccg ctcaacgtca gccgtgaaat
    11341 tctgcaagag aataaagtta cccaatcgct ccgttctgcc ttaaccaagc gtgcgttaca
    11401 actgctggaa aaattggcga aagacgatgc cgaaaaatat gcccaattct ggcaagcgtt
    11461 cggcgtggtg cttaaagagg gcgtgggcga agactttgcc aacaaacaac aggttgcagg
    11521 cttactccgt tttgcctccg cccagcgtga tgacagcgaa caagcggtca gttttgccga
    11581 ttatattgca agaatgaaag aggggcagaa agcgatctac ttcttaaccg cagacagcta
    11641 ccaagcggct aaaaacagcc cgcacttaga gctgttccac aaaaaaggca ttgaggtgct
    11701 actgctttct gaccgcattg atgaatggtt ggttagccac ctcaccgagt ttgacggcaa
    11761 accgctacaa agcattacca agtcggactt agacttaggc gagcttgccg acaagcagga
    11821 agaagagagc caaaaagccc aacaggcgga gtttggttcg ttcttagaac gggcgaaagg
    11881 ctactttggt gaacgggtca aaaacgtggt gctgactcac cgcttaaccg acacaccggc
    11941 agtggtttcc actgacagcg atgaaatgac cacccaaatg gcaaaactgt ttgcagcaat
    12001 ggggcaacaa gcaccagaag tgaaatatac ttttgagctg aacccagatc acccaatggt
    12061 gaaaaaagta gctgatcttg ccgatgaagc cgagttcgcc gattggattg aactgctgtt
    12121 tgaacaagct ctgcttgctg aacgaggcac gttggaaaac ccgacagcct ttattaaacg
    12181 ggtaaataaa ttgttgggct agccattact aaaaacggaa atctaggttt ccgtttt
//
LOCUS       DANLZD010000081        12013 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.081, whole genome shotgun sequence.
ACCESSION   DANLZD010000081 DANLZD010000000
VERSION     DANLZD010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12013)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12013)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12013
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.081"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..407)
                     /locus_tag="PXE26_001614"
     CDS             complement(<1..407)
                     /locus_tag="PXE26_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5594183.1"
                     /translation="MPFYAGQVKCIFIDPPYNTKSAFTHYDDNLEHSIWLSMMYPRLE
                     ILRELLAEDGSIWITLDDNESHYLKIMLDEIFGRKNFISNLIWEKKRKPSFLGKVGKV
                     TDNLFCYAKNKNELNELNDLTYLETSGDETYPL"
     gene            complement(776..3262)
                     /gene="torA"
                     /locus_tag="PXE26_001615"
     CDS             complement(776..3262)
                     /gene="torA"
                     /locus_tag="PXE26_001615"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
                     /protein_id="HDL5594184.1"
                     /translation="MKKQDNIDVSRRGFLKNSSLSLAAGAGLASGTTGVVGALASTSA
                     KAAEMKTVVTAAHWGPLGVVVENGKVVKSDSVFEISVPNELQHVVADQVHGETRVKYP
                     MVRKGYLEGNKDTTLRGRDEWVRVSWDKAFELVANEMKRVREAHGANAIFGGSYGWYS
                     SGALHASRTLLQRYLNVTGGFVGVKGDYSTGAAQVIMPHVLGTIEVYEQQTSWEVILE
                     SSDIVVLWSANPLNTLRIAWTSTDQQGIEYFKKLKESGKRIICIDPVKSESCEFLGAE
                     WVPVNTGTDVALMLGMAHTLVAEGKHDQAFLKKYTTGFEKFEEYLLGKTDNQPKDAKW
                     ASQICGVPEETIKKLATDFQSKRTMLMAGWGIQRQRHGEQGHWMLVTLAAMLGQIGLP
                     GGGFGLSYHYSNGGVPSATGGILGSITANPAVEAGAKTWLDETSKSSFPVARISDALL
                     NPGKTIDYNGTQITYPDIKIVYWAGGNPFTHHQDTNTLVKAWQKPDTIIVNECHWTPT
                     ARMSDIVLPATTSYERNDLTMSGDYSMMNIFPMKQVVEPQFEAKNDYDIFAELAKRAG
                     KEAEFTEGKSEMDWLQSFYQTAFEAARKNRVIMPKFEKFWQENKPLSFKASDKAKKWV
                     RYEEFRNDPLLNPLGTPSGKIEIFSEVIAKMNYDDCKGHPTWMEHEEYSGKTTAEEPL
                     ALVTPHSKWRLHSQLAYSSLRKQYAVNDREPVLIHTEDAAARGITSGDIVRIFNKRGQ
                     VLAGAVVTDGIIKGTLALHEGAWYDPLDLGTSEQPLCKNGNPNVLTRDEGTSKLAQGN
                     SPNTATVQVEKFTGQAPEVTVFKEPKYTQG"
     regulatory      complement(3281..3477)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            complement(3481..4596)
                     /locus_tag="PXE26_001616"
     CDS             complement(3481..4596)
                     /locus_tag="PXE26_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HDL5594185.1"
                     /translation="MAKMKKIAVFVGIMALGAAVLGGTQYAMKATSSTEFCVSCHSMT
                     HPQAEWEGSVHFSNRKGIRAECSDCHLPQDGLHYVKAKIIALKDVWHTVVTNKLPDQE
                     AYEAHRLEMAQRVWAEMKENDSMTCKSCHSFDAMVLSEQTEAAQKMHKLAQETNQTCI
                     DCHKGIAHFMPDVPVDNAAAMGELAKHGAEFSTNDKTLYTLAMTPVQLAQGGEIRLLP
                     YAELHQWTAEGEQVKATVNGWQQEGAESVVYMDLGKRIMVALLPDDAQSKVNVTKTVF
                     DNVTNSNWKEINFEITAPKNAVTANITALNHFGDNLNQTHCSGCHAPIGAEHYTANQW
                     IGVVNSMKDRTSMSADDVRAVTIYLQRNAKDVAGSSH"
     gene            complement(4738..6489)
                     /locus_tag="PXE26_001617"
     CDS             complement(4738..6489)
                     /locus_tag="PXE26_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5594186.1"
                     /translation="MDKRSRWSCLVNEQGEISEWEDKAGADYFAELPQICHYAQALLY
                     SDKNSLQFYYSSNHQWLKISLERHQSFVLTQAEHTDLPYGLSKREIELLTLISSGLSN
                     EDIANELCISKRTVDKHIENIFAKTHTKSRTLLAVFAITEHLICLPTPGKLTQSILAS
                     FNIEQLALQIIAKKQPLVTASTRHEPPIFTINHHHSRPIIIGVPYVEQGIGQIDTREL
                     LNGTQLAVETINQQGGIHGREVQVATAGFYVKDKASILQAYHHLFDQEVDAISTAYAC
                     YLPEVHELIATKGIPYLHIATHSGSNKLAQNLPNQRIENMFQVCASDVTYGLGISHFL
                     QYYRYHYAPWLQNKTVMVVTVSWQKVDIGIESLTLSLREQGWNVDYLELTQEQDNYAT
                     LMAQVHNLAPSIIVFASYFAEDIVQFYQTFIRNPTNAIIYSIYAPSAFLPHEKLCEGV
                     LWSTNSGLSENYLGRQFSQHYERFFGKSPTYSQASIAYDQANILANAWKQSVSPRHFK
                     AVSNAIRLQPHYGVNGTYYFNTDSQIGLTYAETHDLSISLPQLVYQIQQGQSRVIAPE
                     LFANAQFILPPWFSEKA"
     regulatory      6653..6809
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            6798..7823
                     /gene="moaA"
                     /locus_tag="PXE26_001618"
     CDS             6798..7823
                     /gene="moaA"
                     /locus_tag="PXE26_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HDL5594187.1"
                     /translation="MQSIIPIKNVGDDVVSGLVDRFQRQYTYLRLSITDVCNFRCNYC
                     LPDGYKPPSHKQTFLSVDEIQRVAKAFANLGTEKIRITGGEPTLRKDFLEIAHTISQT
                     PGIRKVALTTNGYRLERDVELWQQAGITDINVSVDSLDPRQFQLITGENKLQSILKGI
                     DKAFEIGYPKIKVNAVLMKQYTAPELDKFLTWIKDKPIQMRFIELMETGEMDSFFQAQ
                     HLSGQSVMTRLLQEGWQLQPKAMSDGPAKVLSHPDFKGEIGLIMPYEKNFCASCNRLR
                     VSALGKLHLCLFGEEGIDIRDLLASDEQQLQLETRLKSSLQGKREHHYLHIGDSGVRN
                     NLASIGG"
     gene            8324..8800
                     /gene="moaC"
                     /locus_tag="PXE26_001619"
     CDS             8324..8800
                     /gene="moaC"
                     /locus_tag="PXE26_001619"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HDL5594188.1"
                     /translation="MTTFTHINQNGEANMVDVSMKQETVRIARAEAFVRMNAETLQMI
                     VSGNHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEVQLEALPESNQVRIESL
                     CKLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMIIENVRLLSKSGGKSGDFKVD"
     gene            8793..9038
                     /gene="moaD"
                     /locus_tag="PXE26_001620"
     CDS             8793..9038
                     /gene="moaD"
                     /locus_tag="PXE26_001620"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005631889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase sulfur carrier subunit"
                     /protein_id="HDL5594189.1"
                     /translation="MIKILFFAQVRELVATDRLDVEPTFTTAEALREHLSQQGKKWQL
                     ALEKGKLLVAINQTICPLETEIKDGDEVAFFPPVTGG"
     gene            9040..9495
                     /gene="moaE"
                     /locus_tag="PXE26_001621"
     CDS             9040..9495
                     /gene="moaE"
                     /locus_tag="PXE26_001621"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase catalytic subunit MoaE"
                     /protein_id="HDL5594190.1"
                     /translation="MFETLIEVQEAEFDQNRIYQWLSEQHSVGAATLFIGKVREMNLG
                     DNVSGLFLEHYPAMTKKALQEIVAQARTRWDLQRVAVIHRIGQLHTGDEIVLVGVSSA
                     HRGDAYHANEFIMDYLKTKAPFWKREQTQAGERWIEGRESDQQAAKKWQ"
     gene            9528..10010
                     /gene="ybeY"
                     /locus_tag="PXE26_001622"
     CDS             9528..10010
                     /gene="ybeY"
                     /locus_tag="PXE26_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HDL5594191.1"
                     /translation="MENLYIDLQIACENTENLPSEQQFYTWVQKALAVEAKTDDFPES
                     EITIRIVDEAESHELNLTYRGKDKPTNVLSFPFEAPEGIEMPLLGDLVICRQVMEKEA
                     EEQGISAESHWAHLAIHGTLHLLGYDHIEEDEAVEMESLETEIMQSLGYEDPYLSEKI
                     "
     gene            10088..>12013
                     /locus_tag="PXE26_001623"
     CDS             10088..>12013
                     /locus_tag="PXE26_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(Met) cytidine acetyltransferase"
                     /protein_id="HDL5594192.1"
                     /translation="MRTIAIITSPNNADFIQQGYFYIPENHQLKAIPFSNAKTILGQE
                     YPFAIYTMQAENGVNFNLDAFAILAGTIQENGTLFLLCPQWDNLENELDFDALRWNEN
                     QAIACPNFYQHFKQLVAKFGFEVRTNLPKLPATSGQIPSKIYQLTQEQQNILQNLPLD
                     PADIHLITAPRGRGKSTLAGRLAKALPAQNKVLITARSYSALPSFWRSAEQKIPFFAP
                     DNLIEQVKSKNISPNQWLFIDEAASLPLPILHTLCAYFEKVVLTTTTQNYEGTGRGFE
                     LKFPVMLDKPFKHWTLSQPLRWSENDPLEAFVTELLLLSEEKSPLFSKEGKGEIYSLR
                     SHYVPLLKQRSNAKRLWQKQLSKNISYSNKHLQEKIAFYHLLANAHYKTTPTDLRRLF
                     DGENQLLFSQQENEQLIGGIWAMQEGGLDEKLTQAIWLGERRPQGSLVAQYLCFQGNL
                     PQACKLHSIRISRIAVLPEKQNQGVGKRLISQFILQNSVEKRPLDFISVSFGLTTPLH
                     AFWQSCGFQLVQITPNKEASSGYQSAMMIYPISEQGKLFAQQATQAFARDFALQPFFT
                     EICEELQNFEQFRPLATHNLDERDWKNLTAFAHGKRTFSAAYVSLKRLYLSDKARFSE
                     LDIFERKGQKISKMEVEN"
BASE COUNT         3462 a         2541 c         2500 g         3510 t
ORIGIN      
        1 tataatggat aggtttcatc acctgaggtc tcaaggtaag ttaagtcatt taattcattt
       61 aattcatttt tgttttttgc atagcaaaat aaattatctg taactttacc aactttgcct
      121 aaaaaagatg gtttcctttt cttttcccaa attaagttag aaatgaaatt cttccgccca
      181 aaaatttcat caagcataat tttcaaatag tgactttcgt tatcatcaag agtgatccaa
      241 attgaaccat cttcggcaag taactctcgc agaatttcaa ggcgtggata catcattgaa
      301 agccaaatgg aatgctctaa attatcatcg tagtgggtaa aggccgattt tgtgttatag
      361 ggaggatcaa taaaaataca tttgacttgc cccgcataaa agggcaaaag agattttaag
      421 gctgataaat tatcaccctg aataattaaa ttttgcttga ctttagataa ggtttcagca
      481 gaagctgagc tgtcggctgt cggctgtcgg ctgtcggctg tcggctgtcg ggcaatatta
      541 tgcgagaagt ccggcaactc acgcaatagg caatatgggg tttgttttgc ttttttgacg
      601 gcttcttctt tgccgtacca agtaagggtt gtcataaaat gcacctgaaa agtaaaagtg
      661 gattattgta acaagcggtc aaaaaaatag aaagttttac aaaaaattaa gcaaatttaa
      721 ccgcttgcaa catagaaaag gcacagtttt atactgtgcc tttggttata tgaaattagc
      781 cttgtgtgta tttaggctct ttaaatactg ttacttctgg tgcttgtccg gtgaattttt
      841 caacctgtac cgtagcggta tttggtgagt taccctgtgc taattttgat gtgccttcat
      901 cacgggttag cacgttaggg ttgccgtttt tacatagcgg ttgctcgctg gtgccgagat
      961 cgagcggatc gtaccaagct ccttcgtgca aggctaatgt acctttgata atgccatctg
     1021 tcaccaccgc accggctaat acttgaccac gtttgttaaa aatacgtaca atatcaccgc
     1081 ttgtaatgcc acgagcggcg gcatcttcag tatggatcaa caccggctca cggtcattaa
     1141 ccgcatattg tttgcgtaat gatgagtaag ctaactggct gtgtaaacgc catttagagt
     1201 gtggagtcac caatgccaac ggttcttctg cggtggtttt acccgagtat tcttcgtgtt
     1261 ccatccaagt tgggtgacct ttacagtcat cataattcat tttggcaatc acctcagaga
     1321 aaatctcaat tttgccggac ggtgtgccta atggatttag gagtgggtca ttacgaaatt
     1381 cttcataacg aacccatttt ttcgctttgt ctgatgcttt aaaagaaagt ggtttattct
     1441 cttgccagaa tttctcgaat ttcggcataa tcacacgatt tttgcgtgct gcctcaaatg
     1501 cagtttgata gaaactttgt agccaatcca tttcagattt gccttcggta aattccgctt
     1561 ctttgcctgc acgtttggct agttcggcaa aaatatcgta gtcgtttttt gcctcaaatt
     1621 gcggttcgac cacctgtttc atcgggaaaa tattcatcat tgaataatcg cccgacatag
     1681 ttaagtcatt acgctcatag ctggtggttg ccggcagcac gatgtcagac atacgagccg
     1741 ttggtgtcca atggcattca ttgacgataa tagtatccgg tttttgccac gctttcacca
     1801 aagtgttggt gtcttggtgg tgggtaaacg gattaccccc tgcccaatag acaattttga
     1861 tatcaggata agtaatttgt gtgccattgt aatcaatggt tttgcccggg ttgagcagtg
     1921 catcggaaat acgagccacc gggaatgaag attttgatgt ttcatctaac caggttttcg
     1981 ctccggcttc tactgccgga tttgctgtga tagagcctaa aatgccccct gtggcactcg
     2041 gcacgccgcc gtttgagtaa tggtagctta aaccgaaacc accacccggt aagccgattt
     2101 gacctaacat tgcagctagg gtgactaaca tccaatgccc ttgttcaccg tgtcgttggc
     2161 gttgaatccc ccagcctgcc attaacattg tgcgtttaga ttggaaatca gtcgctaatt
     2221 ttttaatggt ttcttccggc acaccacaaa tttgacttgc ccattttgca tctttcggtt
     2281 gattgtctgt tttaccgagc agatattctt caaacttctc aaaaccggtg gtgtattttt
     2341 taaggaatgc ttgatcgtgt ttgccttcag cgactaaggt atgagccata ccgagcatta
     2401 acgcaacatc agtgccggtg tttaccggta cccattctgc acctaaaaat tcgcaagatt
     2461 cactttttac cgggtcaata cagataatgc gtttcccgct ctctttgagt tttttgaagt
     2521 attcaatacc ttgttgatcg gtagaagtcc acgcaatgcg tagcgtattt aacgggttag
     2581 ctgaccaaag caccacaata tctgaacttt ctaaaatcac ttcccaacta gtttgctgtt
     2641 cgtacacctc gattgtaccc aagacgtgtg gcataatcac ttgagcagca ccggtagaat
     2701 agtcgccttt tacaccaaca aatccgccgg taacatttaa atagcgttgt aacagtgtac
     2761 gggaagcgtg taatgcccca gaactatacc aaccgtaaga accaccaaaa atagcattcg
     2821 ccccgtgagc ctcacgaaca cgtttcattt cattcgcaac taattcaaat gccttatccc
     2881 acgaaactcg cacccattca tcacgcccac gtagagtagt atctttatta ccttctaagt
     2941 agcctttacg caccattggg tattttactc gtgtttcacc gtgtacttgg tctgctacca
     3001 cgtgttgcaa ttcatttggc acagaaatct caaaaacaga atcagatttc accactttgc
     3061 cattttctac cactacacct aaaggccccc agtgggcggc agttactact gttttcatct
     3121 cggctgcttt ggcactggtg gaagctaatg cccccactac accggtagta ccactggcta
     3181 aacctgcacc ggcagctaag cttaatgatg aattttttag aaaaccgcga cgacttacgt
     3241 caatattgtc ttgttttttc ataataaacc tcgtttgaag ttaagttaaa aatagacacc
     3301 tttctaaagt cgagtggata aaccatttct cgtgtatcca ttggtaaaag caccgacggt
     3361 aatttttgca aaatgttagg aaaaaatgac cgcttgtagt aggtgcttta cggcttgcta
     3421 ccatatctct gctctcagca gacacttagg ctcacaagct cggtatcctc taagttgcaa
     3481 ttaatgggaa ctgcctgcta catcttttgc attacgttgg agatagatag tcaccgcacg
     3541 cacatcatca gccgacatag atgttctgtc tttcattgaa tttaccaccc caatccattg
     3601 atttgcggtg taatgttctg ccccaatcgg tgcatggcaa ccgctacagt gtgtttggtt
     3661 taagttatcg ccaaaatgat ttagtgcagt aatattggca gtgactgcat ttttaggagc
     3721 agtaatttca aaattgattt ctttccaatt tgagttggtg acattatcaa acactgtttt
     3781 tgtgacattc actttgcttt gagcgtcatc aggtagaaga gcaaccataa tacgcttgcc
     3841 taaatccata tacaccacag attccgcacc ttcttgttgc cagccattaa ccgttgcttt
     3901 aacctgctcg ccttctgctg tccattgatg taattctgca taaggtaaca agcgaatttc
     3961 tccaccttga gcgagctgca ctggagtcat tgcgagcgta taaagggttt tatcatttgt
     4021 gctaaattcc gcaccgtgtt tagctaattc gcccattgct gcggcattat ctaccggcac
     4081 atcaggcata aaatgggcaa ttcctttatg gcaatcaata caggtttgat tagtttcttg
     4141 ggctagtttg tgcattttct gtgccgcttc tgtttgttca gaaagtacca tcgcatcaaa
     4201 actatgacag cttttacagg tcatagaatc gttttctttc atttctgccc aaacacgttg
     4261 tgccatttct agacgatggg cttcataggc ttcttgatca ggtaatttat tggttacaac
     4321 ggtgtgccaa acatctttta atgcgatgat tttagctttg acataatgca agccgtcttg
     4381 tggtagatgg caatccgaac actcggctcg aattccctta cggttggaaa aatggacact
     4441 gccttcccac tctgcctgtg ggtgagtcat agaatggcag ctcacacaaa attctgttga
     4501 gctggtggct ttcattgcat attgtgtgcc acctaatacc gcagcaccta atgccataat
     4561 accgacaaat acagcaattt ttttcatctt agccataaat taccccactt aatacactaa
     4621 aaattaaaga cagaggcatt gtattaactc ccaagaggta taaaaataag taaaaatacc
     4681 tattacctcg aaagagtgag aataatttga tctaaggcaa aaatatgtag tgaaatttta
     4741 ggctttttca gagaaccacg gcggtaagat aaattgtgca ttggcaaaca actccggtgc
     4801 aatcacacgg ctctgccctt gttggatttg gtaaaccaac tgtggcaagc tgatagataa
     4861 gtcgtgggtt tctgcgtaag ttaatccaat ttggctatcg gtattaaaat agtaagtgcc
     4921 gtttacccca taatgtggct gtaagcggat cgcattggag acggctttaa aatgccgtgg
     4981 tgaaacactc tgtttccacg catttgccag aatattcgct tggtcataag caatactggc
     5041 ttgggaataa gtgggcgatt tgccgaaaaa ccgttcgtaa tgttggctaa actgtctgcc
     5101 taaataattt tcgcttaacc cactattggt actccaaaga acgccttcgc aaagtttctc
     5161 gtgtggcaaa aacgccgaag gtgcataaat actgtaaata atggcatttg ttgggttgcg
     5221 aatgaacgtt tgataaaact gtacaatatc ttctgcaaaa taagaggcaa acacaataat
     5281 ggaaggtgcg agattatgca cctgtgccat taatgtggca taattatctt gctcttgggt
     5341 gagttccaga taatccacat tccagccttg ctcccgcaaa cttagggtta aactttcaat
     5401 accgatatca actttttgcc aactcaccgt taccaccatc accgttttat tctgaagcca
     5461 aggggcataa tggtaacggt aatattgcag aaagtgagat atacctaagc cataggttac
     5521 atcactggcg caaacctgaa acatattttc aattcgttga ttcggtaaat tttgggcaag
     5581 tttatttgag ccactatggg ttgcaatatg caaataagga atgcctttag ttgcaattaa
     5641 ttcgtgtact tccggcaagt agcaggcata agcggtggaa atcgcatcaa cttcttgatc
     5701 aaataaatga tggtatgcct gaagaatact tgctttatct ttaacataaa acccagccgt
     5761 tgcaacctgt acttctctgc cgtgaatacc accttgttga ttgatggtct caaccgcaag
     5821 ttgagtgccg ttaagtagct ctcgggtatc gatttgccca ataccctgtt caacataagg
     5881 cacgccaata ataatcggac gactatgatg gtggtttatc gtaaaaatcg gtggttcgtg
     5941 tcgagttgaa gccgttacaa gcggttgttt tttcgcgata atttgcaatg ccagttgttc
     6001 aatgttaaag ctggcaagaa tggattgggt tagttttccc ggtgtgggta aacagattaa
     6061 atgttcggta atggcaaaaa cagctaataa ggttcggctt ttggtatgtg ttttcgcaaa
     6121 aatattttcg atatgtttat caacagtccg tttgctgata caaagctcat tggcgatatc
     6181 ctcattgctc aaaccactgc taattagagt gagaagctca atctcccttt tactcagtcc
     6241 ataaggcaaa tcggtatgct ctgcttgagt caatacaaac gattggtggc gttctaggct
     6301 gatcttaagc cattgatggt ttgaactata gtaaaactgc aagctatttt tatctgaata
     6361 gagcaatgcc tgtgcatagt ggcaaatttg cggtaattca gcaaaatagt ctgcccctgc
     6421 tttgtcttcc cattctgata tttcgccttg ttcatttact aaacaagacc atcggctacg
     6481 tttatccatt ctcacctcga actaaaaacg ttagctaaaa tagcaaaatt atctcggcat
     6541 taatatgata taaatcaaac taagcaacgg ttgccagatt tttataggta gagcatacaa
     6601 tttaaattat acctcttgcc taattaggtt tctcaccata aaatgaaaac caatttattg
     6661 aagactccga gcattatttc ctaactctaa aaattaaaga caaatttttg atatggaatt
     6721 tatgccagta acagcataaa gctgttcaaa ggataactta gaaatgggtt gtcctctcgt
     6781 gtttagaaag gtgtcaaatg cagtctatta tcccaattaa aaacgtgggt gatgatgtcg
     6841 tttcaggttt agttgatcgc tttcagcgtc aatatactta tttgcgacta tccattactg
     6901 atgtttgtaa cttccgttgt aattattgct tgcctgatgg ctataagccg ccttcacata
     6961 agcaaacttt tcttagcgtt gatgaaatcc agcgggtggc taaagccttt gccaatttag
     7021 ggacggaaaa aatccgtatc accggtggtg agccaacttt acgcaaagat ttcctcgaaa
     7081 tcgctcacac tatttcacaa acacccggta tccgtaaagt tgccctaacc accaacggct
     7141 atcgcctaga gcgtgatgtt gaactgtggc aacaagccgg tattaccgat attaatgtga
     7201 gtgttgatag ccttgaccca cgccaatttc aactgattac cggcgagaac aagttgcaat
     7261 ctattttaaa gggtattgat aaagcctttg aaattggcta cccaaaaatt aaagtcaatg
     7321 cggtgctaat gaagcaatat accgcccctg aattggataa attcctcact tggatcaaag
     7381 acaagccgat tcaaatgcgg tttattgagc tgatggaaac cggtgaaatg gatagtttct
     7441 tccaagctca acatctttct ggtcaatcgg tgatgacccg cttattacaa gaaggctggc
     7501 aattacaacc caaagcgatg tctgacggcc cggcaaaagt gctttctcac cctgatttta
     7561 aaggcgaaat cggcttaatt atgccctacg agaaaaattt ctgtgcctct tgcaaccgct
     7621 tgcgtgtttc cgcacttggt aaactgcatc tttgcttatt tggtgaagaa gggattgata
     7681 ttcgtgattt actggcaagc gatgagcaac agttacagct tgaaacccgc ctaaaatctt
     7741 ccttacaagg caagcgagaa caccactatt tgcatattgg ggatagtggg gttaggaata
     7801 atttggcgag tatcggtggt taaacaacca ccgagcgtgt tttttctgtt acttttcttt
     7861 gcttcgccaa agaaaagtaa ccaaaagaaa ggcgacccca gattttcctt aatccttcgc
     7921 ttgttgctaa cttttgggac gaacttttca aactcgccaa ctgcgttggc tcaaacacga
     7981 aaagttgtcc tcaaaagttt acgcaatcgc tacggcggaa aataggggca agcggtacat
     8041 tatttaagat ttttgcaagt ttttatttaa aaataaccgc ttgtaatgtt ccagcttctc
     8101 ccttctgaac cgcctgagcg actttgaatt tataggaaaa atttagtgtt tgagccaacg
     8161 aagttggcga gttttaaatt tttccgttaa acaaattcaa ataaaatgaa gatagcggtg
     8221 aagtagggtg tgctttcttt ggttactttc tttgcacaag caaagaaagt aacaagaaga
     8281 cgctcaatat taattttaca atcaaattta aagagacaaa caaatgacaa ccttcaccca
     8341 catcaaccaa aacggcgaag ccaatatggt tgatgtttca atgaaacaag aaaccgtacg
     8401 cattgcccga gcggaggcat ttgtgcgaat gaatgccgaa acattacaaa tgatcgtcag
     8461 tggtaatcac cacaaaggcg atgtattcgc aaccgctcga attgccggta ttcaggcggc
     8521 gaagagaact tgggagctga ttccactctg ccacccgtta ttgctttcta aagtggaagt
     8581 tcaactggag gcgttgccgg aaagcaacca agtgcgaatt gaatcactct gtaaactaac
     8641 cggcaaaacc ggcgtggaaa tggaggcatt aaccgcagct agtgttgctg ctctgactat
     8701 ttacgatatg tgtaaagccg tgcaaaaaga tatgattatt gaaaatgtaa gattacttag
     8761 taaaagtggc ggaaaatcag gagatttcaa ggttgattaa gatacttttt ttcgcccaag
     8821 tgcgtgaact tgtggcaacg gatagactag atgttgagcc tacttttacc actgccgaag
     8881 cgttgcgtga acacttaagc caacagggta aaaaatggca acttgccctt gaaaaaggca
     8941 aactgctggt tgcaattaat caaacgatct gcccgcttga aacggagatc aaagacggcg
     9001 atgaagtggc attcttccca ccggtaaccg ggggctaaaa tgtttgaaac cctgattgaa
     9061 gtacaagaag ctgaatttga ccaaaaccgc atttaccaat ggctcagtga acaacatagc
     9121 gtgggggcag ccactctatt catcggtaaa gtacgtgaaa tgaatttggg cgataatgtt
     9181 tccggtttgt ttcttgaaca ctatccggca atgactaaaa aagcattgca agaaattgtg
     9241 gctcaagctc gcactcgttg ggatttacaa cgcgttgcgg tgattcaccg cattgggcaa
     9301 ctgcataccg gtgatgaaat cgtattagtc ggtgtgagtt ctgctcatcg aggtgatgcc
     9361 taccacgcca acgagtttat tatggattat ctcaaaacca aagccccatt ttggaaacga
     9421 gaacaaaccc aagccggtga acgttggatt gaagggcgtg agagtgacca acaagccgcc
     9481 aaaaaatggc aatagaaaaa atggcaataa tttgcaaaag gtaacgaatg gaaaatttat
     9541 atattgattt gcagatcgcc tgcgaaaata ccgaaaactt accaagtgaa caacaatttt
     9601 atacttgggt acaaaaagcc ctcgcagttg aggcaaaaac cgatgatttc cctgagagtg
     9661 agatcaccat tcggattgtc gatgaagcag aaagccacga gctaaatctg acttatcgtg
     9721 gtaaagacaa gccaaccaat gtgctatctt tcccgtttga ggcccccgaa ggaatcgaaa
     9781 tgccactatt gggtgattta gtcatctgtc gtcaagtaat ggaaaaagag gcggaagaac
     9841 aaggtatttc agccgaatcc cattgggctc atttggcgat tcacggcaca cttcatctgc
     9901 tcggctacga ccatattgag gaagatgaag cagtggaaat ggaaagcctc gaaaccgaaa
     9961 ttatgcaaag tttagggtat gaagatccgt atctttcaga aaaaatatag tcttgtaggg
    10021 gagggtcctg tgccctccag tactccatta taatcggaca ggcacaggag ctgttcctac
    10081 aagttatatg agaacgatcg caatcataac atctcctaac aatgccgact ttattcaaca
    10141 aggctatttt tacattcccg aaaatcatca gcttaaagct atcccctttt ccaatgccaa
    10201 aacgatttta ggacaagaat acccttttgc catttatact atgcaagcag aaaatggggt
    10261 gaattttaac ttagatgctt ttgcaatact tgccggcact attcaagaaa acggtacttt
    10321 atttttgctt tgtcctcagt gggataattt ggaaaatgaa ttagatttcg atgcgttacg
    10381 ttggaacgaa aatcaggcta ttgcctgccc gaatttctat caacatttta aacaattagt
    10441 cgctaaattt ggttttgaag tcagaactaa tttgccaaaa ttaccggcta caagcggtca
    10501 aattccttca aaaatttacc aattaacgca agaacagcaa aatattttgc aaaatctacc
    10561 gcttgatcct gccgatattc atttgattac cgcccctcgt gggcggggca aatctaccct
    10621 tgcagggcga cttgcaaaag cgttacccgc acaaaataag gtattaatta ccgcacggtc
    10681 ttattctgca ttgcccagtt tttggcgttc ggcagagcaa aaaatccctt ttttcgcacc
    10741 tgacaattta atcgagcaag ttaaaagtaa aaacatttca cctaaccaat ggctctttat
    10801 tgatgaggca gctagcctac ccttgccgat actccacaca ctttgtgcct attttgaaaa
    10861 agtggtttta accacaacaa cccaaaatta cgaaggcacg gggcgaggat ttgagctgaa
    10921 attcccggta atgttggata aaccgtttaa acattggacg ttatctcaac cattgcggtg
    10981 gagcgaaaat gatcctctcg aagcatttgt gactgagttg ctattacttt ccgaagaaaa
    11041 atctcccctc tttagcaaag aggggaaggg ggagatttat tcgcttcgct cacactatgt
    11101 gccgttgcta aagcaacgtt caaacgcaaa gcgtttgtgg cagaagcaat tatcgaagaa
    11161 tataagttat tcgaataagc atttacagga aaaaatcgct ttctaccact tactcgccaa
    11221 cgcccattac aaaaccactc caactgactt acgccgttta tttgatggcg aaaatcagct
    11281 tttgttttca caacaggaaa acgagcaact tatcggcgga atttgggcaa tgcaagaggg
    11341 tggtttagat gaaaaattaa cccaagccat ttggctaggg gaacgccgtc cgcaaggcag
    11401 tctagtggct caatatctct gttttcaagg gaatttaccg caggcttgca aattgcattc
    11461 cattcgcatt tctcggattg cggtattgcc tgaaaagcaa aatcaaggcg ttggcaagcg
    11521 gttgatttct cagtttattt tgcaaaattc ggtagaaaaa cgaccgcttg attttatctc
    11581 tgtgagcttt gggctaacta ctccactcca cgcattttgg caatcttgtg gtttccaact
    11641 tgtgcaaatc acaccgaata aagaggcaag cagtggttat caaagtgcaa tgatgattta
    11701 cccgatttcg gagcaaggaa agttatttgc acagcaggca acccaagcct ttgccagaga
    11761 tttcgccctt cagccatttt tcacggaaat ttgtgaggaa ttgcaaaatt tcgaacaatt
    11821 tcgaccgctt gccacacaca atttagatga acgtgattgg aaaaatttaa ccgcgtttgc
    11881 tcatggcaag cggacgtttt cagcggcgta tgtgagttta aaacggcttt atttatcgga
    11941 taaagcacgc ttttcagagc tggatatttt tgaacgaaaa gggcaaaaaa tctccaaaat
    12001 ggaggtggaa aat
//
LOCUS       DANLZD010000082        12010 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.082, whole genome shotgun sequence.
ACCESSION   DANLZD010000082 DANLZD010000000
VERSION     DANLZD010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12010
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.082"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..583
                     /locus_tag="PXE26_001624"
     CDS             <1..583
                     /locus_tag="PXE26_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDL5594193.1"
                     /translation="YTTIMQRISGAKQIDSLTVKIKDDIESQTAEKSIAELLVAKHGK
                     KDFFIMNSDTIKQTITSTTNTMTLLISSIALISLIVGGIGVMNIMLVSVTERTREIGV
                     RMAIGAKQRNILQQFLIEAVVICLIGGVIGILLASAIIWAFNTLGTNFKMMLSPESVI
                     IAVLCSTLIGVVFGYIPARNAAQLNPITALAQE"
     gene            667..1437
                     /locus_tag="PXE26_001625"
     CDS             667..1437
                     /locus_tag="PXE26_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HDL5594194.1"
                     /translation="MTITNTELEQILNTKLNSSAINDYAPNGLQVEGKREIKKIITGV
                     TATLPLIEKAIEKNADAILVHHGYFWKSENPCIRGMKGKRIKQLLVNDINLFGYHLPL
                     DIHSELGNNAQLAKHLGVKNLQGLEDRPNSIPMYGELENPISANELKQKLEKTLQRTV
                     ILCDEFVHSPQKMIKTIGICSGGGQGYIDLAFEKGCDAFISGEISEQTTHSAREQGIY
                     YFACGHHATERDGVKALGEWLAVEYGLDVEFIDIDNPA"
     gene            complement(1518..2648)
                     /gene="nrdB"
                     /locus_tag="PXE26_001626"
     CDS             complement(1518..2648)
                     /gene="nrdB"
                     /locus_tag="PXE26_001626"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDL5594195.1"
                     /translation="MAYTTFSQHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQ
                     LSFFWRPEEVDVSQDRIDYAQLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSI
                     PELETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDD
                     LIRDSQLYSLYGEGSYQVDGKTCEVSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFA
                     FAERQLMEGNAKIIKFIARDEALHLTGTQHILNIMAYGNDDPEMAEIARECRQEAYEL
                     FLSAAEQEKAWAEYLFKDGSMIGLNRDILVQYIEYITNIRMQAVGLPLPFKARSNPIP
                     WINAWLVSDNVQVAPQEVEVSSYLVGQIDAKVDSRDFGDFEL"
     gene            complement(2675..4945)
                     /gene="nrdA"
                     /locus_tag="PXE26_001627"
     CDS             complement(2675..4945)
                     /gene="nrdA"
                     /locus_tag="PXE26_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDL5594196.1"
                     /translation="MNKSLMVTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELR
                     SHIQFYEGIRTSDIHETIIKAAADLITKDTPDYQYLAARLAIFHLRKKAYGQFEPPHL
                     YEHVKKLVALGKYDADLLSDYTPEEWETMNGFIDHWRDMTFSYAAVKQLEGKYLVQNR
                     VSGEIYESAQFLYLLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIMAGVRTP
                     TRQFSSCVLIECDDSLDSINATSAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHT
                     GCIPFYKHFQTAVKSCSQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMD
                     YGVQINKMMYQRLIKGGEISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIRQRK
                     VKAVELFSLLMQERASTGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLA
                     HFYDEQGEIALCTLSAFNLGTLSNLDELEELADLVVRALDALLDYQDYPVLAARNSSL
                     NRRALGVGVINYAYYLAKNQVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACA
                     YFDQTTYAKGLLPIDTYKKEIDELTQEPLHYDWEQLRQDILQFGLRNSTLTALMPSET
                     SSQISNATNGIEPPRGYISVKASKDGILKQVVPEYERLKAYYELLWDIPNMDGYLHLV
                     GIMQKFVDQAISANTNYDPNRFAEAKVPMKVLLKDLLTAYKYGLKTLYYQNTRDGAED
                     VQDDLDEGCAGGACKI"
     gene            complement(5302..7650)
                     /locus_tag="PXE26_001628"
     CDS             complement(5302..7650)
                     /locus_tag="PXE26_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL5594197.1"
                     /translation="MLISAQFSPLVWAENNDVAVLDEVSVVGSTPSISQGSEVTLLKV
                     SDKIIAGKEFKKRSATLGNALASELGVHSNPFGGGASKPIIRGQEGARIRILQNGSDV
                     IDMSNLSPDHAVVADSLLADQVEILRGSSTLLYASSSPVGIVNVVDKRIPTAIPEKGY
                     EVELNSRFDTAAKEKVGALGATFGIGNHIAVRVEGLSRHSDNYRVPGINLGERLNYVP
                     DTYNKSKVGTLGLSFVGERGYIGASYSKRRDNYGLPGHNHKFDFCTGHIYGNKRDKYA
                     YTYLYPHLIGEENIGSNPHFHCGTNHAEDGTHSHDNPFGHAHDHTHKGPWVDLESKRI
                     DVKAELRQPFKGVDKIKASYADADYYHDEKDAGVLATRYHKQLKKDQDYGKPVNIFKN
                     RGKNTRLEVYHAPLGGLTGVWGVQYQTQKSSMNAPKDREVKFPLVENTNKQFSLFGVE
                     QYMWDSVAVELAGRMEKQKIEIEYDRNEIKRLQEHYRISGGKQVEPDLSPYDETAYAY
                     SGTLNWFFHPDYQLSFTASHNERLPTPMELYYHGQHIATNSFEYGNKDLKKEQSNNVE
                     LGLGYQAERIGYKVSVYYNHFKNYIYNENLFRENQLFMRRYNQAKARFYGVEAEASYR
                     FNDQYQATIFGDMVRGWLTNLPPLKINSDYSVFKDYLPENVEKGKDYLLYRADQNTPR
                     TPPMRLGFRFNAEFTPNWSGDLELIRTFTQRRTSQLEYITEGNTMLNVGLSYSNKWKE
                     LDYKISLNGTNLLNQPVYIHTSYHQFVPQMGRNFMLGMEMKF"
     gene            7835..9292
                     /locus_tag="PXE26_001629"
     CDS             7835..9292
                     /locus_tag="PXE26_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594198.1"
                     /translation="MRSTFKLTLAALAVSIVLSGCKSSQGPSIVADSPPPKEITATDG
                     NDKEKTDNKEKKSAQPNKSDPQPDKPANAKDPVKPDAETNKPSKKDKEYTPPATEKID
                     NSSVQPDKMVPNPIENKENDSNKPNPKESDSDNNDKVTEGNKPNAPTETVNKDKEAEK
                     SKKENKEDSSNNTPNINFDGAKPIDTDSKGSPYRVINLNPRKSVVNASAMQKVDFDSF
                     TDESVENSPFVSSDTEKEYNNTLVFGLGAGDKDSYFKNLNQKGDKHLGIHSGVYEDAN
                     LEGNTKKINYLYVNQPYSSYGALFTDQKDSHLFNVRLTAGRDDVKENGDSYAEYGVFT
                     QSGKEAKWNDNLIGDATYKGQAIARVIRQVNGEQVAGIPQFDGDVTLNLHLSKEWNES
                     KLNGKIDSQSVGVITLKESEIANPTALRSNIGFGEEVIVENKENLVGDYAVDFTGPQL
                     EEAVGVVELENEAETFSENEVIKYNAVFGVSKAAK"
     gene            9356..10768
                     /locus_tag="PXE26_001630"
     CDS             9356..10768
                     /locus_tag="PXE26_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5594199.1"
                     /translation="MKKIALLALFPMMLFARDPNTTQAYIEHTAQPTTTPQRVKIEKS
                     VPIFNETELRANQLLTEKLLIQAIYSRRLANMEKLTAIYRDFTHIDPVLLRYAQGKIA
                     LLKGDYAQAIQHFQTILAKQPKLNTVRIELAIALLYDQQLNQAQAQFEKAKSAEHLPP
                     KVHALIEQYQQHLAKKQEWKFSFSANYVRDGNINRTSKQPNIEQTGYVKQPNLLPQTA
                     HGVHYAFGLQRDFNLFDSHYVSFDNQTQGELYWDNHDYDEITNRTLFGYAYKKSDQTT
                     RLLPFYEKRWKHHRSERWTNGIRLEHAQWFSPHWQLATALEYGKKRYFDLPIYNGSYK
                     LASATLLWLRNPQQFFFVGTDFNQDKTQLKQYSSDTKGIRFGWQREWQALELSSRLTL
                     GYTDRRYKDTAILGGKLNLGRIRHDRVQSANLTLWKRDWHWLGLMPKLQFSYAKHRSN
                     LPSLYAYTDKNINLIIESRF"
     gene            complement(11018..11341)
                     /locus_tag="PXE26_001631"
     CDS             complement(11018..11341)
                     /locus_tag="PXE26_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin"
                     /protein_id="HDL5594200.1"
                     /translation="MQKAYQIYTHSEREKVTEAKLELGKVETRLRNEGKTKEEIAQHP
                     EYLQLKRDLNDKQQTFDNAYGTGSKTKRAVDAVTAALQGLAAKDSGQAAVGLASPYLN
                     EQIKK"
     gene            complement(11310..11837)
                     /locus_tag="PXE26_001632"
     CDS             complement(11310..11837)
                     /locus_tag="PXE26_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDL5594201.1"
                     /translation="MRDKNKERQQTLERYQELYDQDPELRVIAANSEGDLDLLQETFF
                     VKGELTITDSTPKEKWNWLHMCNLNSYSPSPLSVVEFYIKHGVDVNAQDCYGMTPLHY
                     AMRAKNVDAAIALLNAGADPNIENKDQVIPLSMIGAVPKEIELIEHDISEVKETQELV
                     KGIGEIAEGLSDLHA"
     gene            complement(11839..>12010)
                     /locus_tag="PXE26_001633"
     CDS             complement(11839..>12010)
                     /locus_tag="PXE26_001633"
                     /inference="COORDINATES: protein motif:HMM:NF025767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594202.1"
                     /translation="ELNWSQKQFNDYVNARPENFRLENISENRSHKNEMPGKDNIKSI
                     IDDMKKFQQIGK"
BASE COUNT         3673 a         2590 c         2231 g         3516 t
ORIGIN      
        1 ttataccact attatgcaac gcatttcagg tgcaaaacag atagattcac tcacggttaa
       61 aattaaagat gatattgaaa gccaaactgc cgaaaaaagc attgccgaat tgttagtagc
      121 taaacacggc aaaaaagatt tctttattat gaatagtgat acgatcaaac aaaccattac
      181 cagtaccacc aatacaatga ctttgctgat ctcctctatc gcccttattt cgctgattgt
      241 cggtggtatc ggggtaatga atattatgct cgtttccgtc accgaacgca cccgagaaat
      301 tggtgtccga atggcgattg gcgcaaaaca acgcaatatt ttgcaacaat ttttaattga
      361 ggcggtggtt atttgcctaa taggtggtgt gattggcatt ttactggcaa gcgctattat
      421 ttgggcattt aataccttag gtacgaattt taaaatgatg ctttcaccgg aatcggtgat
      481 tattgccgtg ctctgctcta cacttatcgg tgtggtattt ggctacattc cggcaagaaa
      541 cgccgcccaa ttaaacccaa ttactgctct ggcacaagag taaatgcgat aactatctgc
      601 tacactgtag gggcaaaaaa ttttttgccc ctacatccat tattatgcca agtttaagga
      661 gataaaatga caataaccaa tactgaacta gaacaaattc tgaacaccaa actcaacagc
      721 tccgccatta acgactatgc cccaaatggc ttgcaagttg aagggaaaag agagatcaaa
      781 aaaattatta ccggtgtgac agctacactt cccctgattg aaaaagcgat tgagaaaaac
      841 gccgatgcaa ttttagtcca ccacggttat ttttggaaaa gtgaaaaccc gtgcattcga
      901 ggaatgaaag gtaaacgcat taaacagctt ttagtgaatg acatcaatct ctttggttat
      961 cacctaccac tggatattca ctccgaacta ggtaacaacg cccagcttgc taagcattta
     1021 ggagtaaaaa atctacaagg tttagaagac agacctaatt caattccaat gtacggtgaa
     1081 ttagaaaatc cgatttccgc caatgaactg aaacaaaaac ttgaaaaaac gttacaacgc
     1141 accgttattt tatgtgatga atttgttcat agcccacaaa aaatgattaa aacaataggg
     1201 atttgctccg gcggaggaca aggctatatt gatttagcct ttgaaaaagg ctgtgatgcc
     1261 tttattagtg gcgaaatttc cgaacagacc actcactctg cccgtgaaca aggaatctat
     1321 tattttgctt gcggtcatca cgccacggaa cgagatggcg taaaagcctt aggtgaatgg
     1381 ttagccgttg aatatggttt agatgttgaa tttattgata ttgataaccc tgcataaaaa
     1441 atacaagcgg ttgaatttcc tgaaaatttt gcaatttgca aaaaatcact aaaaatcaac
     1501 cgcttgtata tcatagtcta aagttcaaaa tcgccaaaat cacggctatc tactttagca
     1561 tcaatctggc caaccaaata agaactgact tccacttctt gtggtgctac ctgtacatta
     1621 tcggaaacca accacgcatt gatccacgga atggggttgg aacgtgcctt aaatggtaat
     1681 ggtagtccaa cagcctgcat ccgaatatta gtgatatatt caatatattg caccaaaata
     1741 tcccgattta gccctatcat cgaaccgtct ttaaacaggt attccgccca cgctttttct
     1801 tgttcagctg cacttaaaaa aagctcgtag gcctcttggc gacattcacg tgcaatttct
     1861 gccatttcag gatcatcatt gccataggcc ataatattca atatatgctg agtgccggta
     1921 agatgtaatg cttcatcacg tgcaataaat ttgatgattt tggcatttcc ttccataagc
     1981 tgccgttccg caaaggcaaa tgagcaagca aaagagacat aaaaacgaat tgcttcaagc
     2041 gcattcacac tcatcataca gagataaagt tgtcttttta gactacgcaa actgacctca
     2101 caggtttttc catcaacctg ataactgcct tcaccataca aactatagag ttggctgtca
     2161 cgaatcaaat catcataata ggcggaaata tctttggcac gcttaataat ttcttcgttt
     2221 gtgacaatat catcaaatac tattgatgga tcattgacaa tattacggat gatatgtgtg
     2281 taagaacgac tgtgaattgt ttcgctaaat gtccaagttt caatccaggt ttcaagctcg
     2341 gggatagaca ctaatggcaa aagcgccaca ttcgggctac gcccttgaat ggaatccaac
     2401 aaggtttggt attttaaatt gctgataaaa atgtgctttt catgttcagg cagttgggca
     2461 tagtcaatgc ggtcttgtga cacatccact tcttccggtc gccagaaaaa tgagagttgt
     2521 ttttcaatca gtttttcaaa aatttcgtat ttttgttgat cataacgcgc cacattcaca
     2581 ttttgtccaa aaaacatggg ttcttttagt tgatcatttt tatgttgtga aaacgtagta
     2641 tatgccatgt tattctcctt tatttctgtt cttattaaat tttacaagca ccaccagcac
     2701 agccttcatc taagtcgtct tgcacatctt ctgctccatc acgggtattt tgatagtaaa
     2761 gggtttttaa cccgtattta tacgccgtta atagatcttt taataatact ttcatcggta
     2821 ctttagcttc tgcaaagcgg tttgggtcgt aatttgtatt cgccgaaatc gcttggtcaa
     2881 caaatttctg cataatccca accaaatgca aatatccgtc catattagga atatcccaaa
     2941 gcagttcata gtatgctttt aaacgttcat actccggcac aacctgcttt aaaataccgt
     3001 cttttgatgc tttaacacta atatagccac gcggaggttc aattccattg gtggcattcg
     3061 aaatttgcga cgaagtctcc gatggcatta aggcagttaa agtggaattg cgcaagccaa
     3121 attgcagaat atcctgacgt agttgttccc aatcataatg aagcggttct tgagttaatt
     3181 catcaatttc ttttttataa gtatcgatag ggagtaaccc tttggcataa gtggtttgat
     3241 caaaataagc acacgcccct tgttctttgg ctaaattcat cgatgctttt aataaataat
     3301 actgaatcgc ttcaaaggta cggtgagtta aattattagc actgccatcg gaataacgca
     3361 cttggttttt agctaaatag taagcatagt taatcacgcc tacacctaat gcgcgacgat
     3421 ttaatgagct gttacgtgca gctaataccg gataatcttg ataatctaat agggcatcta
     3481 gcgcacgaac cactaaatca gccaattctt ctaactcatc taaattgctg agtgtgccta
     3541 aattaaatgc cgataatgta cataatgcga tttccccttg ttcatcataa aaatgtgcca
     3601 gtggcttagt tggcaaagca atttctaagc agaggttcga ttggcgtatc ggtgcgacac
     3661 gaggattaaa tgggctatga gtattacaat gatcgacatt ctgaatataa attcgccctg
     3721 ttgaagcccg ctcttgcatc agtaatgaaa acaattctac agctttaact ttacgttgcc
     3781 gaatgctcgg atcttgctca tattgcaaat aaagttgctc aaatttagct tgatcagcaa
     3841 aaaacgcttc atataacccc ggcacatctg atggactaaa taaactaatc tcaccgcctt
     3901 taattaaacg ttgatacatc attttattaa tctgtacccc gtaatccata tggcgagcac
     3961 ggttttcttc cacaccacgg ttatttttta ataccattaa gctttctgct tccaaatgcc
     4021 aaatcggaaa atacacggta gccgctccac cgcgaacacc accttgagag caagacttta
     4081 ctgcagtttg aaaatgttta taaaagggaa tacagccggt atgaaatgct tctccaccac
     4141 gaatggggct acctaatgcc cgaattgcgc cggcattaat accgatccca gcacgctgtg
     4201 aaacatattt aacgattgca gccgaggttg cattgatgga atctaagcta tcatcacact
     4261 caattaacac acaggaacta aattgacgag taggtgtacg cactcctgcc ataatcggtg
     4321 ttggcaaaga aattttgaaa gtggaagtcg catcataaaa acggcgaata taatctaagc
     4381 ggcttgctgt tggatactta gaaaataaac aggcagctac gagtaaatac aaaaattgag
     4441 ccgattcata aatctctccg ctaacacgat tctgcactaa atattttcct tccaactgct
     4501 ttactgctgc ataggaaaac gtcatatccc gccagtgatc aataaatcca ttcattgtct
     4561 cccattcttc gggcgtatag tcgctcagca agtctgcatc atatttacct agcgcaacta
     4621 attttttaac gtgctcatat aaatgcggtg gctcaaattg tccataagct tttttgcgta
     4681 agtggaaaat cgccaagcgt gcggctaaat attgataatc tggcgtatcc ttagtgatta
     4741 gatcagctgc agccttgata atagtttcat gaatatctga agtgcgaata ccttcataaa
     4801 attgaatgtg agaacggagt tctacttgtg aaacagaaac attctctaac ccttctgccg
     4861 cccaagtaat cacacgatga attttatcta gattgagttg ctcgcgcgtg ccattacgct
     4921 ttgttaccat taaactttta ttcataatta ttaacccttt ataaaatacc ttagtaaaac
     4981 actacatctt gtgtttttca ttaaagtaaa cacaagatag tgtgcttaaa gcaaaacatc
     5041 aaccaataaa tttttacttt ttctcttgac agatgctaag ttatttataa ataaccatat
     5101 ttttaataaa gggataaagt taattgtctt atttaacaac aaacaggaaa ttttggtaag
     5161 ctccgaaaat aacaagaaag gaaaaacagc actattttat ccaaattacc aatacctgag
     5221 ttttaaacaa gcggttattt ttagccgttt ttttgcaaaa tttgaagaaa aaataaccgc
     5281 ttgtcttgtt atgtcgagaa cttaaaattt catctccatt cccaacataa aatttcgtcc
     5341 catttgtggt acaaattggt gatacgaagt gtggatatac accggctgat tcagtaagtt
     5401 tgtgccgttt agactgattt tgtaatccag ctctttccac ttattgctat acgacaaccc
     5461 gacattcaac atcgtattac cttcggtaat atattccaac tggctcgtac ggcgttgggt
     5521 aaaggtgcgg atcagctcta aatcccccga ccaatttggg gtaaattccg cattaaagcg
     5581 aaaacctaaa cgcattggcg gtgtacgagg ggtgttttgg tcagcccgat atagaagata
     5641 atctttccct ttttccacat tttccggcag ataatctttg aacacactat aatcgctatt
     5701 tatcttcaat ggtggtaaat ttgttagcca gcctcgtacc atatcgccga aaatcgtggc
     5761 ttggtattgg tcgttaaagc ggtagcttgc ctctgcttct accccgtaaa aacgggcttt
     5821 tgcctgatta taacggcgca taaatagctg attttcacgg aaaagatttt cattgtagat
     5881 gtagttttta aagtgattgt aataaacact cactttatag ccaatacgtt cagcttgata
     5941 gcccaagccc aactccacat tatttgactg ctcttttttc aagtctttat tgccgtattc
     6001 aaacgaatta gtagcaatat gctgcccgtg ataatacagc tccattggcg ttggcaagcg
     6061 ttcattgtgc gaggcagtaa acgaaagctg atagtcaggg tggaagaacc agttaagcgt
     6121 gccggaatag gcataagccg tttcatcata gggtgaaaga tctggctcaa cctgtttgcc
     6181 gccactgata cggtagtgtt cttgtaaccg tttgatttca ttgcgatcat actcaatctc
     6241 aatcttctgc ttttccattc gtccggcaag ctcaacagca acgctatccc acatatactg
     6301 ctcaacccca aacaggctga actgtttatt ggtattttca accagcggga atttcacttc
     6361 gcgatctttc ggcgcattca tactgctttt ttgcgtttga tactgaacac cccatacacc
     6421 ggttaagcca cctagcggtg cgtgatagac ctccaagcgg gtatttttgc cccgattttt
     6481 gaaaatattc accggcttgc cgtaatcctg atcttttttc agctgtttat ggtaacgggt
     6541 ggcaagcacg cctgcatctt tttcatcgtg gtaataatcg gcatcagcat agcttgcctt
     6601 aattttatct acgcccttaa acggctggcg tagctcggct ttcacatcaa tccgttttga
     6661 ttctaaatcc acccacgggc ctttgtgagt gtgatcgtgg gcgtgtccga acgggttatc
     6721 gtggctgtgt gtgccgtcct cggcgtggtt ggttccacag tggaagtgcg gattgctccc
     6781 aatattttcc tcaccaatca aatgcggata gagataggta taagcgtatt tatcccgctt
     6841 attaccgtag atatgaccgg tacagaaatc aaatttatgg ttatgccccg gcaagccata
     6901 attatcccgc cgtttgctgt atgaggcacc aatatagcct cgttcaccga caaaggataa
     6961 gcccaacgtg ccgactttgg atttattgta agtgtccggc acatagttta agcgctcgcc
     7021 taagttgatc cccggcacac ggtagttatc actatgacga ctcagccctt cgactcgcac
     7081 cgcaatgtgg ttaccgatgc caaaggttgc ccctaatgcg ccgactttct ctttggcggc
     7141 ggtatcaaaa cggctattga gttcaacctc atatcccttt tcaggaatag cggtcggaat
     7201 acgtttatcc accacattta caattcctac cggcgaactg ctggcataaa gcaaggtgct
     7261 ggaaccacgc aagatttcga cctgatcggc aagcagtgaa tcagcaacaa cggcgtgatc
     7321 aggagatagg ttcgacatat caatcacgtc tgaaccgttt tgcaaaatgc gaattctcgc
     7381 cccttcctgc ccacgaataa tcggcttact cgctccgcca ccaaacgggt tactatgcac
     7441 gcctaattct gacgccaacg cattacccag cgttgccgaa cgctttttaa attccttacc
     7501 tgcaataatt ttatcactga cttttagcaa ggtaacttca ctcccctgcg atatacttgg
     7561 agtgctgcca acgaccgaaa cttcatctaa caccgctaca tcgttatttt ccgcccaaac
     7621 aagcgggcta aattgagccg aaatcagcaa tgccaatcct gttttcttaa acacaatctt
     7681 tctccttaaa aaaattaagg ataataaggt actgcaaaat atgagtcttt acaataataa
     7741 ccataaaaaa attatatttt ttaaattttc cctattgcca aacaggaaat atatccatta
     7801 aaattttatg gatttaatct gacggagaca aaatatgcgt tctacattca aacttactct
     7861 tgcagcttta gctgtttcta ttgttttaag tggctgtaaa tctagccaag gtccatctat
     7921 tgttgcagac agccctccac ctaaggaaat aacagctact gatggcaacg ataaagagaa
     7981 aaccgataac aaagagaaaa agtctgcgca accaaataaa tccgatcctc aaccggataa
     8041 acctgctaac gcaaaagacc cagtaaaacc tgatgcggag acaaataaac caagtaaaaa
     8101 agataaagaa tatacaccac ctgctactga aaaaatcgat aactcatcag tacagccgga
     8161 taaaatggtg cctaatccta tcgagaataa ggaaaacgac agtaataaac ctaaccccaa
     8221 agaaagcgat agcgataata atgacaaagt cactgaaggc aataaaccaa atgccccaac
     8281 agaaacagta aataaagata aagaagctga gaaaagtaaa aaggagaata aagaggactc
     8341 aagcaataat actcctaaca ttaattttga cggggcaaag cctatagata cagatagtaa
     8401 aggtagcccg taccgagtaa taaacctaaa tccgagaaaa agcgtagtaa atgcaagtgc
     8461 tatgcaaaaa gtagatttcg actcttttac ggatgaatct gttgaaaatt caccatttgt
     8521 cagtagcgat actgaaaaag aatacaataa tacacttgtt tttgggcttg gtgccggaga
     8581 taaagattct tattttaaga acttaaatca aaaaggggat aaacatttag gtattcatag
     8641 tggcgtgtat gaagatgcga atttagaagg taatactaaa aaaattaact atctctatgt
     8701 aaatcaacct tattcgagct atggtgcttt atttacggac caaaaagaca gccatttatt
     8761 caacgttcgt ctgaccgctg gtagagatga tgtaaaagaa aatggagata gttatgccga
     8821 atatggtgta ttcacacaat caggaaaaga agctaaatgg aatgataacc tgattggtga
     8881 tgccacttac aaaggtcaag ctattgctcg cgttattcgt caggtaaatg gggaacaagt
     8941 cgcaggtatt cctcaatttg atggtgatgt tacattaaat ttacaccttt ccaaagaatg
     9001 gaatgaaagt aaactaaacg gcaaaattga tagccaaagt gttggggtaa ttacacttaa
     9061 agaaagtgaa atagctaacc ctaccgcact ccgctcaaat attggttttg gagaagaagt
     9121 catagttgag aataaagaga atcttgtggg tgattacgct gtcgatttta ccgggcctca
     9181 gcttgaagag gcggtaggcg ttgttgaatt agaaaacgaa gccgagacat tctctgaaaa
     9241 tgaagtcatt aaatacaatg cggtatttgg cgtaagcaaa gcggcgaaat agtatttttt
     9301 gtatcttaca aagggctgtt aagccctttt atttttatta ttttaaggat aaaaaatgaa
     9361 aaaaattgcc ttactggcac ttttcccaat gatgttattt gcccgagatc ctaatactac
     9421 acaggcttat attgagcata ctgcacagcc aactacaacc ccccaaaggg tcaagatcga
     9481 aaaatcagtg cctattttta acgaaactga attacgtgct aatcaattat tgaccgaaaa
     9541 gctacttatc caagctattt atagtcgtag gcttgctaac atggaaaaat taactgcgat
     9601 ttatcgggat tttacccaca ttgacccggt tttactgcgt tatgcacaag gtaaaattgc
     9661 cctactgaaa ggcgattacg cacaggcaat tcagcacttc caaaccattc ttgccaaaca
     9721 acccaaacta aacactgtaa gaattgagct ggcgattgct ctattgtacg atcagcaact
     9781 taatcaagcc caagcacaat ttgaaaaagc caaaagtgcc gaacatctac cgcctaaagt
     9841 tcacgcatta attgagcaat atcagcaaca tctggcaaaa aaacaggaat ggaaatttag
     9901 tttttcagcc aattatgtgc gagacggcaa cattaaccga acctcgaaac agccgaacat
     9961 tgagcaaacc ggctatgtaa aacaacctaa tttgttgccc caaaccgcac atggtgttca
    10021 ctatgcgttt ggattacaga gagatttcaa cctgttcgac tcacactatg tgagttttga
    10081 caaccaaacc caaggtgaac tttattggga taaccacgat tatgatgaaa ttaccaatcg
    10141 caccttgttt ggatacgctt acaaaaaatc cgaccaaacc acccgcttgt taccgtttta
    10201 tgaaaaacgc tggaaacatc accgttcgga acgctggaca aacggaattc gacttgaaca
    10261 cgcacaatgg ttttcaccgc attggcaact cgccaccgca ttggaatacg gcaaaaaacg
    10321 ttattttgat ttgccgattt ataacggcag ctacaaactt gcctctgcca cattgctttg
    10381 gttacgcaat ccacaacaat ttttctttgt cggcactgat ttcaatcaag acaaaactca
    10441 gttaaaacaa tatagctctg atactaaagg catacgcttt ggctggcaac gagaatggca
    10501 agccctcgag ctttccagtc gcctcacgct tggctatact gacagacgtt acaaagacac
    10561 cgctatattg ggaggaaaac ttaatcttgg cagaatccgc catgaccgtg tgcaaagtgc
    10621 taacctcacg ctttggaaac gagattggca ctggctcggc ctgatgccga agctgcaatt
    10681 tagttacgcc aaacaccgta gcaacctgcc gagcctctat gcctacaccg ataaaaacat
    10741 caatttaatt attgaaagtc ggttctagct ccataaaaac aacaagcggt taaaattcct
    10801 agaaattttg caaattgcaa aaaatgtaga aaatttaacc gcttgtatct atactgcagc
    10861 ttcttttcct tcagtataaa ttaatataca ccgttgcaac aataatggct gctccctgtc
    10921 atcaccttga actgaaaatt gctcaaggtg gatatgacta tcgcagccgc ttccaccgca
    10981 cccagtaatg tatgggcaag caggttggct tgggtatcta ctttttaatt tgttcgttga
    11041 gatatggcga agctaagcct actgctgctt gtcctgaatc tttcgccgct aaaccttgta
    11101 aggctgccgt caccgcatcc accgcacgct tggttttgct gcccgtgccg taggcgttat
    11161 caaaagtctg ctgtttatcg tttaaatccc gttttaattg gagatattca ggatgttgag
    11221 cgatttcttc ttttgttttt ccctcatttc tcaaacgggt ttccactttg cccaattcca
    11281 gcttcgcttc cgtcactttt tcacgctcac tatgcgtgta aatctgataa gccttctgca
    11341 atctcgccta tgcccttcac cagctcctgt gtttctttca cctcactaat atcgtgttct
    11401 attaactcta tctctttagg aactgctcca atcatagaca atggaataac ttgatcttta
    11461 ttttcaatat tcggatctgc ccccgcattt aataatgcta tcgctgcatc aacattcttt
    11521 gccctcattg cataatgtaa aggggtcatt ccgtagcaat cttgggcatt aacatctacc
    11581 ccatgtttaa tgtaaaattc gactacagaa agaggagatg gtgaataact atttaagtta
    11641 cacatatgta gccagttcca tttttctttt ggtgtgctat ccgtaatagt cagttcacct
    11701 tttacgaaaa atgtttcttg taaaagatcg agatcgcctt ctgagtttgc tgcaataact
    11761 cttaattcag gatcttgatc atataattct tgataacgtt ctaatgtctg ctgacgttct
    11821 ttattcttat ctctcatttt actttcctat ttgttggaat tttttcatgt catcgattat
    11881 tgatttaata ttatctttcc ccggcatctc attcttatga ctccgatttt cagatatatt
    11941 ttctaatctg aaattctccg gtctcgcatt aacataatca ttaaattgtt tttgactcca
    12001 atttaattct
//
LOCUS       DANLZD010000083        11910 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.083, whole genome shotgun sequence.
ACCESSION   DANLZD010000083 DANLZD010000000
VERSION     DANLZD010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11910)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11910)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11910
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.083"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..570
                     /locus_tag="PXE26_001634"
     CDS             <1..570
                     /locus_tag="PXE26_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5594203.1"
                     /translation="FIAVQYPEEIDIKSKNGKVAKQFCQRKNLPLYITEISKERIRRA
                     GKQILQNNPENRPLDVGFKVFKLTESHFKQWQSPTSENLADQLEMFIDPVSEKADTQA
                     VLYELLLRLGLKLTAKVRLENKVFWVEENGLIFALLLNAADEEIIQTVIAQQPKKVIA
                     LDRLFNGNDARKKNTELQMQDAGITFFVI"
     gene            580..3216
                     /locus_tag="PXE26_001635"
     CDS             580..3216
                     /locus_tag="PXE26_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL5594204.1"
                     /translation="MELQFETLEYQLQAVNATVNLFVGQPNAATEFSLKAQNDMRFVP
                     NLGLQISDEQLQQNLANLQNRQKIDRTLLVEQGKNFTVEMETGTGKTYVYLRTIFELN
                     RQYGWQKFVIVVPSVAIREGVLHTLETTKSHFNTVFDNPSVNQKFEYKSNQTSRLKSF
                     ASANHIEILVMNIDAFTKESNVINTVNESGDAPIFYIQQANPIVIIDEPQNMETEIRR
                     NAIESLSPLFTLRYSATHKNAYNPIFSLNPVQAYEMGLVKQIEVDSVLAENEVNGAYL
                     SLKEIKTGAKSWSAKIEILFNDKKAMKKKVISVKPNQDLYELSNQNEMYRSGFILSGM
                     DTDSQMVSFSNGTQIFQGAEHSQLKEDVQKMQIRRTIGEHLQKEKKLRPLGIKVLSLF
                     FIDKVDNYRPSAQSPTGGKFAKWFEEIYLELAKEEPQGVHNGYFSQDKKGVAKDTNGT
                     TQADNETYQLIMRDKEKLLSLENPLRFIFSHSALKEGWDNPNVFQICTLNDTASEMKK
                     RQEIGRGLRLPVNQQGLRIYDRHLNTLTIIANESYEQFAATLQREIEEDCGVQFAKSN
                     VKKREDKKAVRYRKDFSLHPEFAAIWERIKHQTTYRVDFSNAELIESAVEKIRKMPDI
                     EATKIKHSKVKLEMNETGISTNYRSSNETAVNTQWAIPDLLSEIQKKTGLTRATLCKI
                     LQKSDRLQEVFRNPQRFIDLIAEKINLALQQIMTDGVEYHKIAGKTYEMTLFGDFDFY
                     LNQYTFEVQDKTKTIYEDYIALDSQTENIFARHCESSEQVEFYFKLPKRFKIPTPLGS
                     YNPDWAVVFKGENKIYLVAETKNTGKGIQAGVDEEKLDESERMKIDYARKHFKGLQRD
                     YKDLDYRVVQKVEELSAEYCKI"
     gene            3348..5780
                     /gene="gyrB"
                     /locus_tag="PXE26_001636"
     CDS             3348..5780
                     /gene="gyrB"
                     /locus_tag="PXE26_001636"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HDL5594205.1"
                     /translation="MSEQTQATSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHM
                     VFEVVDNAIDEALAGHCKDIIVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTV
                     LHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLA
                     IIGNTEKTGTSVRFWPSLDIFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKE
                     EHFKYEGGIKAYVEYLNEGKTHIHNTPFYLTTEKDGIGVEISLQWNDSYNENVYCFTN
                     NIPQRDGGTHLAGFRGALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKV
                     PDPKFSSQTKDKLVSSEVRGAVESSMNEALSDYLAENPDDAKNIVTKIIDAARAREAA
                     RKAREMTRRKGALDLGGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAI
                     LPLKGKILNVEKARFDKMLSSQEVATLITALGTGIGRDDYNLEKLRYHKIIIMTDADV
                     DGAHIRTLLLTFFYRQMPELIENGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDI
                     ALEGAGLYVSEDAPALSGVALENLIAQYNGVQKLIERLSRRYPTLLLNELIYSKPLSV
                     EFAKNQANMTAWSEQFVATLMAKEVGGSFYRINTLFNEERQIYEPEIIVTTHGMDSTY
                     RLDYNFINGNEYARIVALGNELNDLLSDSAYVVRGERRQEISSFAEALDWLVKESRKG
                     LTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAIAADKLFSTLMGDEVEPRRDF
                     IETNALYAQLDI"
     gene            complement(5833..6795)
                     /gene="cmoB"
                     /locus_tag="PXE26_001637"
     CDS             complement(5833..6795)
                     /gene="cmoB"
                     /locus_tag="PXE26_001637"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005707797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HDL5594206.1"
                     /translation="MIDFRPFYQQIATTDLSAWLETLPLQLKQWEKTTHADYAKWAKV
                     ADFLPNSTACINLKDKVESISSKPLSEGEVKQITHHLKQLMPWRKGPYHLHGIHIDTE
                     WRSDFKWDRVLPHLAPLKDRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQFE
                     AVRKLLGNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKAQLVRGG
                     ELVLETLVIDGDINDVLVPADRYAKMKNIYFIPSVAALINWLEKVGFKNVRCVDEAIT
                     TLEEQRKTDWLENESLVDFLDPNDHSKTIEGYPAPKRAVILANA"
     gene            complement(6892..8655)
                     /locus_tag="PXE26_001638"
     CDS             complement(6892..8655)
                     /locus_tag="PXE26_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     accessory protein YcaO"
                     /protein_id="HDL5594207.1"
                     /translation="MSEQTFITGKDAALEDSIATFQHKLKTLGFNIEEASWLNPVPNV
                     WSVHIRDADCPQCFSNGKGASKKAALASALGEYFERLSTNYFWADFYLGQEIANSEFV
                     HYPTEKWFPIDDEAIPPMEMMDEFLWEYFDPNGEITPELLVDLQSGNYDRGIVTLPYV
                     RQSDNETVYIPQSIIGNLFVSNGMSAGNTKNEARVQGLSEVFERFVKNRIITEAISLP
                     EIPQSVIDGYPTIKASIEKLEQEDFPILCYDASLGGEFPVICVILLNPNNGTCFASFG
                     AHPNFQVAFERTVTELLQGRSLKDLDVFAPPSFNNEDVADHANLETHFIDSSGLISWD
                     LFKRDADYPFVHWDFSGTTEQEFNNMMAIFNKHNQPVYIMDYEHLGVYACRILAPGMS
                     NIYPSDDLVYANNNMGMDWREILLDLPHFHHDAETYQELLDELDEQSIDDLTRVREFI
                     GVVAEKGSAMQTLRIGELKSMLHLALGNLEQASDWANWTANMNASVFSAERNNYYRCL
                     IQSIELFLDEERDSEQYRMVFEKMYGKQAVEAAWGAIQGGNPFHGLTASDESLENMTA
                     HQKLLNAYRKVQKAKVNPIAR"
     gene            8919..11207
                     /locus_tag="PXE26_001639"
     CDS             8919..11207
                     /locus_tag="PXE26_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated helicase/endonuclease Cas3"
                     /protein_id="HDL5594208.1"
                     /translation="MEEHTIQSFYAHSGKLSDHSDWQTLLSHANNVGLLAAEFAAPFA
                     SQEIARCTGLLHDLGKYSERYQKRLHGGERVNHSTAGAKIAVERWGPLGKMMAFCIAG
                     HHAGLANGSGEGKNRSTLTQRLQEQFGYGHKDLPVLDAIWQQELNLPEKLPLPPLKPS
                     KNEPFFSYAFFIRMLYSCLVDADFLDTEAFYANLEKRPLERGNYPNLTALHQQFNQFI
                     AQFRERIATQTPNTQEAQRKAEVNRLRSEILDYAVSQAKQETGLFSLTVPTGGGKTFT
                     SMAFALEHAKQYGLCRIIYVIPFTSIIEQNAAEFRKAFGELGTEAVLEHHSTFDHDSL
                     PDKSSRDKLKLASENWDTPVVVTTAVQFFESLFADRSSRCRKLHNIVGSVIILDEAQM
                     LPLNLLRPIMAAIDELARNYQCSVVLCTATQPAIHQANGFYKGFENVREIAPNPTALF
                     EKLKRTTVKHIGIQTDVELQSKLADNPQMLIIVNNRRHARALYDSAKQLEGAYHLTTL
                     MCAKHRSQTLTEIRLRLKQNLPCRVIATSLIEAGVDVDFPLVMRAEAGLDSVAQAAGR
                     CNREGKRLSVESNVWVFQPEEQWKAPPELGLLSGCMRSTVQVHADDLLNPKAINHYFQ
                     AVYEAKGKELDKPNILKACHDAGQSLNFPFQKIAEDFRMITSHLIPVIIPFDQEAENL
                     IDRLRYADQVGGILRKLQPYTVQVPEKALAELYNAGRVETINETNFGKQFYCLIGMDL
                     YDEVAGLSWENVDFLESEKLVL"
     gene            11338..>11910
                     /locus_tag="PXE26_001640"
     CDS             11338..>11910
                     /locus_tag="PXE26_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594209.1"
                     /translation="MREPLLDEDELKKWLQTIFTDNLVIIVGSGLSCAEGLPGMGALA
                     DRLKERMPECLDDIDKVTWNTISDCLDSEGLEGALLKHQANETIEAAIIKITAEYVLS
                     EEQKAINKCIAENQKLKFSYLLPHISASNPKIARVITTNYDRLIEFAAEYENWGIDSM
                     MVGRYWGKHNPDLSRKLQIRDIRVKGKCPKL"
BASE COUNT         3745 a         2285 c         2564 g         3316 t
ORIGIN      
        1 tttattgcgg ttcaatatcc tgaagaaatt gatatcaaga gtaagaatgg aaaagtagca
       61 aagcaatttt gccaaagaaa aaatttacca ctatatataa ctgaaatttc aaaagaacgt
      121 attcgccgtg ccggaaagca gattttgcaa aataaccccg aaaaccgacc gcttgatgta
      181 ggttttaaag tcttcaaact gacagaaagc cattttaaac aatggcaatc gcccacatct
      241 gaaaatttag ccgatcaact tgaaatgttt attgatcctg ttagtgaaaa agcggatacg
      301 caagccgttt tatatgagct tttattgcgt ttagggttaa aactcacggc aaaagtgcgg
      361 ttggaaaata aggtgttttg ggtggaagaa aacgggctga ttttcgcctt gctgttaaat
      421 gcagccgacg aagaaattat tcaaactgtt atcgctcaac aaccgaaaaa agtcatcgct
      481 ttagaccgtt tattcaacgg caatgatgcc cggaagaaaa acaccgaatt gcaaatgcaa
      541 gatgccggca ttacgttttt tgtgatttaa ggagaaaaaa tggaactcca atttgaaacc
      601 ttagagtatc aattacaagc cgttaatgcc acagtaaatt tgtttgtcgg acagccgaat
      661 gccgcaactg aattttcact caaagcccaa aatgatatgc ggtttgtgcc gaatttaggc
      721 ttgcagatta gtgatgagca gttacaacag aatttggcta atctgcaaaa caggcaaaaa
      781 atcgaccgca ctttgcttgt cgaacaggga aaaaatttta ccgtggaaat ggaaactggt
      841 acagggaaaa cctatgtcta tttacgcacg atttttgaat taaaccgtca atacggctgg
      901 caaaaatttg tgattgtcgt gccgagtgtg gcaattcgtg agggagtgtt gcatacgttg
      961 gaaactacaa aaagccattt taatacggta tttgataacc cgagcgtcaa tcaaaaattt
     1021 gaatataaaa gtaaccaaac ttcacgctta aaatcctttg ctagtgctaa tcatattgaa
     1081 attttagtga tgaatattga tgctttcacc aaagaaagta acgtgattaa taccgtgaat
     1141 gaaagcggtg atgctccgat tttctatatt caacaggcga atccgattgt gattattgat
     1201 gaaccgcaaa atatggaaac ggagattcgc cgtaatgcga ttgagagttt aagtccgctt
     1261 ttcactttgc gttattctgc cacccataaa aatgcgtata acccgatttt tagcctcaat
     1321 ccggtgcaag cctatgaaat gggattagtt aaacaaattg aggtagatag cgtattggcg
     1381 gaaaatgagg taaatggagc ttatctttcc ctcaaagaga ttaaaacagg ggcaaaaagc
     1441 tggtcggcaa aaatcgaaat tttatttaac gataaaaaag cgatgaaaaa gaaagtgatt
     1501 agcgtgaaac cgaatcagga tttgtatgag ctttccaacc aaaatgaaat gtatcgttca
     1561 gggtttatat taagcggaat ggataccgat agccaaatgg ttagcttctc caacggcaca
     1621 caaatttttc aaggggcgga acattcccaa cttaaagaag atgtgcaaaa aatgcagatt
     1681 cgccgcacta ttggcgagca tttgcaaaaa gaaaagaaat tacgaccgct tgggatcaag
     1741 gtgttgtctt tgttctttat cgataaagtg gataattatc gcccttctgc acaaagccct
     1801 acggggggaa aatttgcaaa atggtttgag gaaatttatt tggagctagc caaagaagag
     1861 cctcaaggcg tgcataacgg ttatttctca caggataaaa aaggcgtagc aaaagatact
     1921 aatggcacaa cgcaagcgga taacgagact tatcaactga ttatgcggga taaagaaaaa
     1981 ttgctttcgc tggagaatcc gttacggttt attttctcgc attctgcctt aaaagaagga
     2041 tgggataatc cgaatgtgtt tcaaatttgt actttaaacg atactgcaag cgaaatgaaa
     2101 aaacgccaag agattgggcg gggcttgcgt ttgcctgtga atcaacaagg attgcggatt
     2161 tatgatcgtc atctaaatac gctgacaatt atcgcaaatg aaagttacga acaatttgcc
     2221 gccacattac agcgtgaaat tgaggaagat tgtggtgtac agtttgccaa aagcaatgtt
     2281 aaaaaacggg aagataaaaa agccgttcgc taccgtaaag atttcagctt acatccggaa
     2341 tttgcggcaa tttgggaacg gattaaacac caaaccactt atcgggtaga tttcagtaat
     2401 gcggaattga ttgaaagtgc ggtggaaaaa atccgcaaaa tgcccgatat cgaggcgaca
     2461 aaaattaagc attccaaagt gaaattggaa atgaatgaaa cagggatttc aactaattat
     2521 cgctcatcta atgaaacagc ggtaaataca caatgggcga tacctgattt attgagtgag
     2581 attcaaaaga aaaccgggct gacgcgtgcg accctttgca aaattttaca aaaatccgac
     2641 cgcttgcaag aagtcttccg caatcctcaa cgctttattg atttaattgc agagaaaatc
     2701 aaccttgctt tacaacaaat tatgacagac ggggtggaat atcacaaaat tgccggaaaa
     2761 acctatgaaa tgacgttatt cggcgatttt gatttttacc tcaatcaata tacttttgaa
     2821 gttcaagata aaacaaaaac gatttatgaa gactatattg cactggattc ccaaacagaa
     2881 aatatcttcg cccgacattg tgaatctagt gagcaagtgg agttttattt taaattaccc
     2941 aaacgtttta aaattccaac gccattaggc agctataatc ccgattgggc agttgtgttt
     3001 aagggagaaa ataaaattta cttggttgcc gaaacgaaaa atacaggcaa aggtattcaa
     3061 gcaggagtag atgaagaaaa attagatgaa agtgaacgaa tgaaaatcga ctatgcccgt
     3121 aagcatttca aaggcttaca gagagattat aaggatttgg attatagggt tgtacagaaa
     3181 gtggaggagc tgtctgcgga gtattgtaaa atttaatctg tggtcttgta gaattgagat
     3241 agactgcaat ttcaactaaa atttaaccgc ttgttttgcg atacttttac gcatttttct
     3301 gctataatcg gcacaatttt ttcgatttca aattagtagg aataagaatg tctgaacaaa
     3361 ctcaagcaac aagttatgat tcttccagta ttaaggtgtt acgcggctta gatgcggtgc
     3421 gtaaacgccc gggaatgtat atcggcgata ccgatgacgg tacgggctta caccatatgg
     3481 tgtttgaggt ggttgataat gcgattgacg aagcattagc cgggcattgt aaagacatta
     3541 ttgtcacaat tcattccgat aattcggttt ctgtgcaaga tgacggtcgt ggaattccgg
     3601 tggggattca cccggaagaa ggcgtttcgg cagcagaagt cattatgact gttcttcacg
     3661 caggcggtaa atttgacgat aactcctata aggtttccgg cggtttgcac ggtgtgggcg
     3721 tatcggtggt gaatgcactt tcctctaaat tacaactcac tattcgccgt gaaggacacg
     3781 ttcacgagca attctatagc ttaggtgagc ctgatgcacc tttagcgatt atcggcaata
     3841 ccgaaaaaac ggggacgtcg gttcgtttct ggccaagttt ggatattttc aaaaataaaa
     3901 ccgaatttga atataaaatt ctgtctaaac gcttgcgtga actatcattt ttgaattcag
     3961 gcgtttcgat taaattaatt gatgaacgag acggcaaaga agagcatttt aaatatgagg
     4021 gcggtattaa agcctatgtt gagtatttaa acgaaggcaa aactcatatt cacaatacgc
     4081 cattctattt gaccactgag aaagacggca ttggcgtgga aatttcccta cagtggaatg
     4141 acagttacaa cgaaaatgtg tactgcttta ccaataatat tccacagcgt gatggcggta
     4201 cgcacttagc cggtttccgt ggggcattaa ctcgtgcgtt gaaaaactat atggataaca
     4261 gcggggtatt gaaaaaagcc gatgcgaaca ttgatgcctc aggtgatgat gcccgtgaag
     4321 gtttagtagc ggtgatttcg gtgaaagtgc cggatccgaa attctcctca caaaccaaag
     4381 ataaattggt gtcgtcagaa gtgcgtggag cagtggaaag ctcaatgaat gaggctttat
     4441 ccgactattt agccgaaaat ccggacgatg caaaaaatat cgttaccaaa attattgatg
     4501 cagcccgtgc aagagaagca gctcgtaaag cccgtgaaat gacccgccgt aaaggggcgt
     4561 tagatttagg cggcttaccg ggtaaattag ctgattgtca ggaaaaagat ccggcgttat
     4621 cggagcttta cttggtggag ggtgactctg ccggtggctc ggcaaaacaa gggcgtgacc
     4681 gtaaaaacca agcgattttg ccgttaaaag ggaaaattct gaacgtggaa aaagcccgct
     4741 ttgataaaat gctttcttca caagaagtag caaccttgat taccgcttta ggcacaggca
     4801 tcgggcgtga tgattataat ttggaaaaat tacgttacca caaaatcatt attatgaccg
     4861 atgcggacgt ggatggtgca catattcgta cgcttttatt aactttcttc taccgtcaaa
     4921 tgccggagct gattgaaaac ggctatattt atattgcaca gccaccgctt tataaagtga
     4981 aaaaaggcaa gcaagagcgt tatattcaag ataacgatga aatgtcgcaa tatgaaattg
     5041 atattgcatt agaaggtgca ggcttatatg tgagtgaaga tgctccagcg ttaagtggcg
     5101 tagcgttaga gaacttaatt gcccaatata acggcgtaca aaaattaatt gaacgtttaa
     5161 gccgtcgtta cccaacatta ttacttaacg aattaattta ttcaaaaccg ctttcggtgg
     5221 aatttgcaaa aaatcaagca aatatgaccg cttggagcga gcaatttgtc gctacattga
     5281 tggcaaaaga ggtgggcggc agtttctacc gtattaatac cttgttcaat gaagaacgcc
     5341 aaatttatga gccggaaatt attgtgacta cacacggtat ggacagtacc tatcgtttag
     5401 attacaactt tatcaacggt aatgaatacg ctcgcattgt ggcattaggc aacgagctga
     5461 acgatttact atctgattca gcctatgtgg tgcgtggtga acgtcgccaa gaaatcagca
     5521 gttttgctga agccttagat tggttggtga aagaatctcg taaaggctta actattcaac
     5581 gttataaagg gttaggtgag atgaatccgg aacaattatg ggaaaccacg atggatccgg
     5641 tggctcgtaa aatgctacag gtcaatatta ccgatgcgat tgcggcagat aaactcttca
     5701 gtacgctgat gggcgatgaa gttgaaccac gccgagattt cattgaaact aacgctttgt
     5761 atgctcagtt agatatttag ttaaaaaatc cgcatttgac atgcggattt tttattctct
     5821 taaactagca ttttaagcat tcgctaaaat caccgcccgc ttcggagcag ggtagccttc
     5881 aatggttttg ctatgatcgt ttggatctaa aaaatccact aaactttcat tttccaacca
     5941 atcggttttt cgctgctctt ctagtgtagt gattgcctca tcaacacaac gcacattttt
     6001 aaagccgact ttttccagcc aattaatgag tgcagcaaca gaaggaataa aatagatatt
     6061 tttcattttc gcatagcgat cagccggcac taaaacatca ttaatatcgc catcaatcac
     6121 cagcgtttct aacaccaatt caccgcctct gactaattgg gctttgagtt gagaaagatg
     6181 atcaagcggt gatttgcgat gataaagcac ccccattgaa aacacggtat caaaagcagc
     6241 aagcggttgc atttgctcaa taccaagtgg aatcagatta gcccgtctat cattccctaa
     6301 gagtttccgc actgcctcaa attggcacag gaacagctcg gtcgggtcaa taccaactac
     6361 catttttgcc ccttcgccta ccattcgcca catatgataa ccgctaccgc agccgacatc
     6421 taaaatggtg cggtctttta acggtgcaag atgcggaagc acacgatccc atttaaaatc
     6481 ggaacgccat tcggtatcaa tatgaatccc gtgtagatga taagggcctt tacgccacgg
     6541 cattagttgc tttaaatggt gggtaatttg cttgacttcc ccctcagata aaggcttgct
     6601 tgaaatagac tcaaccttgt cttttagatt gatacaagcg gtcgaatttg gtaaaaaatc
     6661 tgcaactttt gcccacttgg catagtcagc gtgggtggtc ttttcccatt gtttgagttg
     6721 taagggtaag gtttctaacc aagcagaaag gtcggttgtg gcaatttgtt gataaaaagg
     6781 acgaaagtca atcattttga aatttatgtc taggggagag acctatgccc tcccgaaagg
     6841 tagtaaatag aaaggacagg cacagaacct acccctacga aaaatataaa attatctcgc
     6901 aatcggattt actttcgctt tttgcacttt gcgataagcg ttcagtaatt tctgatgtgc
     6961 agtcatattt tcaagcgatt cgtccgatgc agttaaaccg tggaacgggt taccgccttg
     7021 gattgcaccc caagcagctt caaccgcttg tttaccgtac attttctcaa acaccatacg
     7081 atattgttcc gaatcacgct cttcatctaa gaacaactca atcgattgga ttaagcagcg
     7141 gtaataattg ttacgttctg ctgagaatac gcttgcattc atattcgctg tccagtttgc
     7201 ccagtctgag gcttgctcta agttacctaa agctaaatgc agcatcgatt taagctcacc
     7261 gatacgcaat gtttgcattg cagagccttt ctctgccacc acgccaataa attcacgcac
     7321 acgggttaaa tcatcaatgc tttgctcatc taattcatca agcagttctt ggtaagtttc
     7381 agcatcgtga tggaaatgtg gcaaatctaa caagatttca cgccaatcca tacccatatt
     7441 gttattggca tagaccaaat catcgcttgg atagatattc gacatacccg gtgcaagaat
     7501 acggcaagcg tacacaccta aatgctcata atccataata tacacaggct gattatgctt
     7561 gttgaaaatc gccatcatat tattaaattc ttgctccgtt gtgccggaga agtcccaatg
     7621 cacgaacgga taatccgcat cacgtttgaa aagatcccac gaaattagac cgcttgaatc
     7681 aataaagtgt gtctcaaggt tcgcatgatc tgctacatct tcattattaa atgaaggtgg
     7741 ggcaaacaca tctaaatcct ttaagctacg gccttgtaat aactcggtta cggtacgttc
     7801 aaacgccact tggaaattcg ggtgtgcacc aaaagaggca aaacaagtac cgttatttgg
     7861 gtttaacaag atcacacaaa taactggaaa ttctccgcct aatgaagcgt catagcataa
     7921 aatcgggaag tcttcttgct ctagtttctc gatagaggct ttgattgtcg gataaccgtc
     7981 aatcacactt tgcggaattt ccggcaagct gattgcctca gtaataatac ggtttttgac
     8041 aaaacgctcg aacacttcgg ataagccctg cactcgagct tcattttttg tgttgcctgc
     8101 cgacataccg tttgaaacaa acaggttgcc gataatgctt tgcggaatgt aaaccgtttc
     8161 attgtcagat tggcgaacgt aaggtagggt aacaattcca cgatcataat ttcctgattg
     8221 taaatcaacc aataattccg gcgtgatttc accattcgga tcaaaatatt cccataaaaa
     8281 ctcgtccatc atctccattg gtggaatggc ttcatcatca atcggaaacc atttttcggt
     8341 tggataatgc acaaattcac tattagcaat ctcttgacct aaataaaaat ccgcccagaa
     8401 atagttggta gataaacgct caaaatactc acctaatgca gaggcaagag cggctttttt
     8461 gcttgctccc ttaccgttag aaaaacattg cggacagtct gcatcacgaa tatgcaccga
     8521 ccacacattc ggaacaggat ttaaccaaga ggcttcttca atattaaaac ctaaggtttt
     8581 taatttatgc tgaaaggtcg caatgctgtc ttcaagtgca gcatctttac cggtaataaa
     8641 agtttgttct gacatgataa tacctttaac ttgtcgtaaa aatggcaaca ttctagcaaa
     8701 aatccccata gataagtaaa ttttttgtga aatttctgct gaaagaacag atttcaaaac
     8761 ttagaaaaaa tgattacaag cggtcaaatt ttacttgaat tttgcaagtg aaatttgtgt
     8821 ttgatttaga ttaagaaaat attatctagg atatatacag aataaaaggt tagaggtagt
     8881 attgcttgtg ttaggaagga aatattgaag gtataaaaat ggaagaacat actattcagt
     8941 ctttttatgc ccattcgggg aagctttcag atcattcaga ttggcaaact ttactcagcc
     9001 acgccaataa tgttggcttg cttgccgccg aatttgctgc gccgtttgct tcacaagaaa
     9061 ttgctcgctg cacggggcta ttgcacgatt taggcaaata tagtgaacgt taccaaaagc
     9121 gtttacatgg cggagaacgg gtaaatcact ctactgctgg tgcaaaaatt gcagtggaac
     9181 gttgggggcc tttgggcaaa atgatggcgt tttgtatcgc aggccaccac gctgggttag
     9241 caaatggttc tggagaaggg aaaaatcgtt ctacacttac acaacgtttg caagagcaat
     9301 ttggctatgg tcataaagat ctaccggtac ttgacgctat ttggcagcaa gaacttaatt
     9361 tgcctgaaaa attgccctta ccgccgttaa agccttctaa aaacgaacct ttcttttctt
     9421 acgccttttt tatccgaatg ctctattctt gccttgtcga tgccgacttt cttgatacag
     9481 aagcttttta tgccaatctc gaaaaaagac cgcttgaacg aggaaattac cccaatttaa
     9541 ccgcactcca tcagcaattt aatcaattta ttgcacagtt tagggagcga attgccactc
     9601 aaacgcctaa tacgcaggaa gcacaacgta aagcggaagt aaaccgcttg cggagtgaaa
     9661 ttttggatta tgccgtatct caagcaaaac aggaaacagg tctgttttct ctgactgtgc
     9721 caacgggcgg tggtaaaacc tttacttcaa tggcgtttgc ccttgagcat gctaaacagt
     9781 atggtttatg ccgcattatt tatgttattc cgtttaccag cattattgaa caaaatgctg
     9841 cggaatttcg taaagctttt ggcgaattag gaacagaggc ggtattggaa catcacagca
     9901 cttttgatca cgatagccta cctgataaat caagccgaga taagctgaaa ttggcatcag
     9961 aaaattggga tactcctgtt gtggttacaa ctgcagtgca attctttgaa agtttgtttg
    10021 ccgaccgttc ttcacgctgt cgcaaattgc ataatatcgt cggtagcgtg attattttgg
    10081 acgaagccca aatgctaccg ttgaatttat tacgcccaat tatggctgcg attgatgaat
    10141 tagctcgcaa ttatcaatgt tcggtagtgc tttgcacagc gacacaaccc gctattcatc
    10201 aagcgaacgg tttttataaa ggatttgaaa atgtgcgaga aattgcccct aatccaaccg
    10261 cactttttga aaaattgaaa cgtactacgg taaagcatat cggtattcaa acagatgtgg
    10321 agttgcaaag caaactcgca gataacccac aaatgctgat aatcgtgaat aaccgccgtc
    10381 acgcccgagc gttatatgat tcagcgaaac agttagaggg agcttatcac ctcaccacgc
    10441 taatgtgtgc taaacaccgc tcacaaacgc tgactgaaat tcgtcttcgc ctaaaacaaa
    10501 acctaccttg ccgagtgatt gccacttctt taattgaagc cggtgttgat gtcgatttcc
    10561 cactggttat gcgagctgaa gcaggactag attcagtggc tcaagcagca gggcgttgca
    10621 accgagaggg gaaacgttta tctgtagaaa gcaatgtttg ggttttccaa cctgaagaac
    10681 agtggaaagc accaccagag ctaggcttac tttctggctg tatgcgttca acggttcagg
    10741 ttcacgcaga tgatctactt aatccgaaag caatcaatca ttatttccaa gcggtttatg
    10801 aggctaaagg aaaagagctg gataagccaa atattttaaa ggcgtgtcac gacgctgggc
    10861 aaagccttaa tttcccattc caaaaaatag ctgaagattt ccgaatgatc acaagccatt
    10921 taattccggt gattatccct ttcgaccaag aagccgaaaa ccttattgac cgtttacgct
    10981 atgcggatca agtaggcggt attttaagaa aactccagcc ttacactgtg caagtaccgg
    11041 aaaaagcatt agccgaactc tataacgctg gcagagttga aaccattaat gaaaccaact
    11101 tcggcaaaca gttttactgc ttaattggaa tggatttgta tgatgaagtg gcggggttga
    11161 gttgggagaa tgtggatttt cttgagtcgg agaaattggt tttatagatg aatgtttatt
    11221 ttaacttctt tataagttta attttgcata gatatacttt aatataccaa atagcctatg
    11281 acgtctcgta gtaaacagct agtttgtaag aatagatatt tggaagggaa acgtaaaatg
    11341 agagaaccat tattagatga agatgaatta aaaaaatggt tgcaaactat ttttactgac
    11401 aatttggtca ttattgtcgg ttcgggtttg tcctgtgccg aaggtttgcc gggaatggga
    11461 gcattagctg atagattaaa agaacgaatg cctgaatgtc ttgatgatat agataaggta
    11521 acatggaata ccatttctga ttgtctggat tctgaaggct tggaaggtgc attgttgaag
    11581 catcaagcaa atgagacgat agaagccgct attattaaaa taacagccga gtatgtactc
    11641 tccgaagagc aaaaagcgat aaacaaatgt attgctgaga atcagaagct caaattttct
    11701 tatttgcttc cccatatttc agcttcaaat cctaaaattg cccgtgtaat tactactaat
    11761 tatgatagat tgattgagtt tgcggcagag tatgaaaatt ggggaataga ttcaatgatg
    11821 gtcggtcgtt attggggaaa acataatcct gatttgagta ggaaattgca gataagagac
    11881 attagagtaa aaggtaaatg tccaaaattg
//
LOCUS       DANLZD010000084        11849 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.084, whole genome shotgun sequence.
ACCESSION   DANLZD010000084 DANLZD010000000
VERSION     DANLZD010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11849)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11849)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11849
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.084"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..213)
                     /locus_tag="PXE26_001641"
     CDS             complement(<1..213)
                     /locus_tag="PXE26_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594210.1"
                     /translation="MSSIKEIFSTKNSPINVLMQTEWFLGFILIVVYLDAYFQLVHQV
                     PIYIAIQQKEIYLTKTIDYIAAIFFFS"
     gene            complement(283..1416)
                     /locus_tag="PXE26_001642"
     CDS             complement(283..1416)
                     /locus_tag="PXE26_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDL5594211.1"
                     /translation="MKTIKIGLVGTGYIGRCHAIAYAQAPTLFPLKGKIQLEYLAEIN
                     QALADQKAREFGFQRATDDWRKLVTDPNVDVVDICTPNFLHKEIALEAIKHGKHVYSE
                     KPLALTAQDAKEMVIAAQQAGVKTLVGFNYIKNPTTQLARQIIQNGEIGEVVHFYGTH
                     NEDYLANPNTPIDWHCYKAKAGLGTLGDLAAHIVSIAHYLVGSDIERVIGDMQTVIEE
                     RPSPHNPAEKIKVENEDQASSLIRFANGVMGTLESSRISCGRKMGLTYVVTGTKGTLS
                     YTQERMAELKLYLHDDDKSRQGFKTILVGPEHPDYAAFCVSAGHGIGFNDQKAVEIRD
                     LINGIAADDPMYPDFEEGYKISRVLEAIAKSAEEKRWVEVSEI"
     gene            complement(1547..2575)
                     /locus_tag="PXE26_001643"
     CDS             complement(1547..2575)
                     /locus_tag="PXE26_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5594212.1"
                     /translation="MTTQFLKNMGMVDDKGKIDFIAFFERFGVLIFLILLIIFFTSQN
                     GAFLSQRNIYNVLTEVSIFGIMAVGMTFVILTAGIDLSVGSILAVTAMFAAYIIKGDN
                     TVTLEAGAWGGMSWLIGLSICLGLGTFIGWLHGLGVTKLKLPPFIITLGGMTIWRGLT
                     LVLNNGSPIAGFDEGYRWWGRGDILGVPVPVVIFAVVAIIGYFALHKTRWGRYVYSVG
                     GNPEAARLAGVNINRTLVSVYVVIGALAGLAGFILSARLGSAESVAGVSFELRVIASV
                     VIGGTSLMGGYGRVTGTIIGSIIMGVLINGLVLMDVSAYYQQIIMGLIIILAVAFDTY
                     AKSRRGAL"
     gene            complement(2587..4131)
                     /locus_tag="PXE26_001644"
     CDS             complement(2587..4131)
                     /locus_tag="PXE26_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5594213.1"
                     /translation="MSTPLLEVKDLTKSFSGVMALNGVKLTVGKGEVHALLGENGAGK
                     STLLKALSGAQPQTSGEIIFNGETLSLSDSPFDRQLKGIVTIYQEFNLLPNMTVAENF
                     FLGREPVKGLFVNEKAVNEEAQLVLDNLGLNIKPDTQVSRLSVAQQQMVEIARAMTLN
                     AKLIIMDEPSAALSDKEVETLHQIVRDLKSRGISVIYVTHRLNEVFALCDRFTVFQDG
                     RYSGEGEVKNVNVDQIIKMMVGREVAFTRRPPEETHHTHRPIRLAVKNLHREKPAFDP
                     HGIALHGVSFNIHEGEVLGIAGLVGAGRTEIARCLFGVENYTADEISLDGKPYAATSP
                     LDALEKGVALVPEDRKKEGLVLGLPIKTNMTLPILSKLLKGNLFVDNQKEDDLIETYR
                     QALRIKMASSELEARKLSGGNQQKVILARCMALNPKVLIVDEPTRGIDVGAKSEVHQV
                     LFDMAKQGVAVLVISSDLPEIMAISDRIITLSEGRVTGEIHGDDATEEKLMSMMAVGV
                     QRKAAA"
     gene            complement(4182..5120)
                     /locus_tag="PXE26_001645"
     CDS             complement(4182..5120)
                     /locus_tag="PXE26_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HDL5594214.1"
                     /translation="MKKRIKFVLSALTLGLAMNSFAKDELVVFSLPNLSSPFEVQLQK
                     VAVETSKKLEIKLQVLDGQSSSTKQASDLENAITRGAKGIIISPNDVNAISGAVEEII
                     KEKIPAATLDRKVESSKPVPHFGANNYTGGQEVAKAVKAKYPNGAKIILLTGQPGSTS
                     NIERTKGIRDELAAGGDKYKIVVDQTGNWLRSEGLRIIESVLPTLKEKPEVIISANDD
                     MALGAIEALRSQGLKAGDILVTGFDSTPEALARVKDGWLYLTADQRPSFAVSTALEQV
                     VGNIRESKEVSGADYPPKIILKDNLQEAERFAEISE"
     gene            complement(5452..6963)
                     /locus_tag="PXE26_001646"
     CDS             complement(5452..6963)
                     /locus_tag="PXE26_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HDL5594215.1"
                     /translation="MSQFVQNFINGAVVESQSQRVTSVFNPATGEETKKVKLSLPNEV
                     DAAIAAADQAFKSWSQQSPLRRARILFKFKELLEANFDELARLISSEHGKIYSDAIGE
                     LTRGLEVVEFATGIPHLQKGEFSANAGRGIDIHSIQQPLGVVAGITPFNFPAMVPMWM
                     FPVALACGNTFVLKPSEKDPSVSIRLAELLKEAGLPDGVFNVVQGDKEAVDILLTDSR
                     IQAVSFVGSTAIAQYIYEKGSANGKRVQALGGAKNHALIMPDADVQGTINALLGAAFG
                     AAGERCMALSVAVVVGDELADKIIEELIPKVKALKIGSGLLPQGVLENDMGPVISKEH
                     KAKIESYIDQGVAQGAKLCVDGRGYKVEGFENGYFVGGTLFDNVTPEMTIWQDEIFGP
                     VLSVVRVKDYAEGIALINSHQYGNGSAIFTADGDSARQFTQDVQAGMVGVNIPIPVPM
                     AFHCFGGWKASIFGPLNVYGTDGVRFYTRMKTITTRWPDSSVRSQAAFNFPTL"
     gene            7182..8006
                     /gene="iolB"
                     /locus_tag="PXE26_001647"
     CDS             7182..8006
                     /gene="iolB"
                     /locus_tag="PXE26_001647"
                     /EC_number="5.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-deoxy-glucuronate isomerase"
                     /protein_id="HDL5594216.1"
                     /translation="MSSPLLSKPNFNQHEGLIQHITPENAQWEYVGFDVYQLSKQQIT
                     LESGENELCLVFVTGFGSVYVDDYAFENIGNRTTPFEKIPPYAVYIPPHKSVLVKTEL
                     NLELAVCKAPSQGNYPVRLISPNHIGVEKRGFGNNQRLVHNILPETEAADSLLVVEVF
                     TDEGNTSSYPSHKHDDKHSTEETYLEETYYHRFDPPQGFAMQRVYTDDRTLDECMAVY
                     DKNVVKVPRGYHPVATIAGYNNYYLNVMAGPVRKWKFTWEQDHLWVNSETYKAKFE"
     gene            complement(8082..9533)
                     /locus_tag="PXE26_001648"
     CDS             complement(8082..9533)
                     /locus_tag="PXE26_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HDL5594217.1"
                     /translation="MPNHKFLLLRFQAYINGKFVSSQNGKTFTVQNPTNGEKIGEVAD
                     LGTEETAQAIEAAAVAQKKWQALLPKERSVILRKWFELIMQNQEELAQILSLEQGKPL
                     AESRGEIAYGASFIEWFAEESKRIYGDVLPQDKAGRRLFVTKQPIGVVAAITPWNFPN
                     AMITRKAAPALAAGCAIVIKPAAETPLSALALAQLADQAGIPKGVFNIITSSDVEGVG
                     RELSTNPTVRKLTFTGSTRVGKILMQQSAGTVKKLALELGGNAPAIVFDDADLDTAVE
                     GVFASKFRNGGQTCVCANRIYVQAGIYEQFLAKLSEKVAQIKLGSPFEEEVTIGALIS
                     ERAVEKVESHINDALSLGAELVLGGERHALGGTFFQPTILKNVTQAMKVAREETFAPL
                     APIFKFETEEEVIQWANDTEFGLAAYLFSQNIGRIWRVSEQLEYGIVGINEGIISNEI
                     APFGGWKESGLGREGSKYGIEEFLEIKYLCMKV"
     gene            complement(9711..11021)
                     /locus_tag="PXE26_001649"
     CDS             complement(9711..11021)
                     /locus_tag="PXE26_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL5594218.1"
                     /translation="MIYAEIFVVLAAIYLGLRSGGLGIGLYGGLGLAILTLGFGLPMG
                     SIPVDVMLIIMTVVIGAAVLQAVGGMDLLVRYAEVLMRKNPKYINFIAPMITWLMTIM
                     AGTGFIVFSTLPVIAEVAKESGIRPSRALAGSVVSSQLAIAGSPLSAAMAAMIAVMEN
                     NSVTFFQVIAVCLPVSFIASMVAAFVASKQGCELQNDVVYLERLKAGIVSPSRKLASE
                     STYSKGAKLSIGIFLLATVLVVLLAAVPGLKPVYENGKSMSTRDIIIVMMLASSCLMM
                     LVGKIKPDTIVASPIFRSGMTSIAVIIGIVTLGMTFVDAHLIEIKASIGNILTEYPML
                     LAVVLFFTCALLYSQGSTSALIIPLAVSLGIPNWAILASFIAITGIFILPTYPTSLAA
                     MELDTTGSTRAGKYIIDHPFMLPALVGVAVGLAFGFVWAPMIVS"
     gene            complement(11037..11732)
                     /locus_tag="PXE26_001650"
     CDS             complement(11037..11732)
                     /locus_tag="PXE26_001650"
                     /EC_number="5.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HDL5594219.1"
                     /translation="MARNIIGILGGMGPAATADMFQKFIRLTPADCDQAHIPLLISSI
                     PDIPDRTRYILANGENPAPVMEKYIEGLESAGATCIIIACNTAHYWFEHLKAKSQVEM
                     LSMIDCVVDEVLKCGKWRVGLLATDATLAVDLYKKQLEAQGLTFICPTENGQKAVMDS
                     IYLLKSGELEKATELMLQQRDELIRLGAEVIILGCTEVPIILAQEIEREPMRYVDSTL
                     VLVKKAIDWYQTH"
BASE COUNT         3388 a         2764 c         2339 g         3358 t
ORIGIN      
        1 tgaaaaaaag aaaattgctg caatataatc aatggttttt gtgagatata tttccttttg
       61 ctgtatcgca atatagatag gcacttgatg aacaagttgg aagtaagcat ccaaataaac
      121 aactatcaat atgaagccta aaaaccattc tgtttgcata agaacattga tagggctgtt
      181 ttttgtgcta aaaatttctt taattgaact cataattttt ccttaaatgt aaaaaaacgt
      241 acctcaacca atttgagata cgtttctatt ttaatgtaat tattaaatct cactcacctc
      301 cacccacctt ttctcctccg ccgattttgc tatcgcttcc aatactctgg agattttata
      361 gccttcttca aaatcgggat acatcgggtc atcagcggcg atgccgttga tgaggtcacg
      421 gatttccacc gctttttggt cgttaaaacc gatgccgtga ccggcactca cacaaaaagc
      481 agcgtagtcg ggatgttccg ggccgactaa aatggttttg aatccttggc gggatttatc
      541 gtcatcgtgc aaatagagtt tgagttctgc cattcgttct tgggtatagc tgagcgtgcc
      601 tttagtacct gtaacgacat aggtcagccc cattttacgc ccgcaggaaa tgcgggagct
      661 ttcgagcgtg cccattaccc cattagcaaa tcgtatgaga ctacttgcct gatcttcgtt
      721 ttctactttg attttttctg ctggattgtg cggactaggg cgttcttcaa tcactgtttg
      781 catatcgccg ataacacgct caatgtctga accaaccaaa tagtgtgcga tactgacaat
      841 atgtgcggct aaatctccca acgtaccaag cccggctttg gctttgtagc agtgccaatc
      901 aatcggggta ttagggttgg cgagataatc ttcgttatgc gtgccgtaga aatgcaccac
      961 ctcaccaatt tcgccgtttt gaataatttg gcgagccagt tgggtggttg gatttttgat
     1021 atagttgaaa ccgaccaagg ttttaactcc cgcttgttga gcggcaatca ccatttcttt
     1081 ggcatcttgg gcggtgagtg caagcggttt ttctgaatag acgtgtttgc cgtgtttaat
     1141 cgcttctaag gcaatttctt tgtgcagaaa atttggtgta caaatgtcca ccacatcgac
     1201 attcggatcg gtaaccaatt ttcgccaatc gtcagtagca cgctgaaagc caaattctcg
     1261 ggctttttga tcggctaatg cttggttgat ttcggcaagg tattccagtt ggattttgcc
     1321 tttaagtgga aacagggttg gggcttgagc gtaggcaatg gcgtggcagc gaccgatata
     1381 gccggtgcca actaagccga ttttgatggt tttcataata ctatcccagt agggtgcgtt
     1441 tgctaacgca ccattagaat tttcagtgca ttggcaaacg caccctataa gaaagcggtc
     1501 tggttttgca aaatttttac aaaatcagac cgcttgtgtt agctatctat aatgctcctc
     1561 gtctgctctt cgcataggtg tcgaaggcaa cggcaaggat gatgattaag cccataatga
     1621 tttgttggta gtaagcggaa acgtccatta gtactaaacc gttaatcaat acacccataa
     1681 taatggagcc gatgatggtg cctgtgactc gtccgtatcc ccccattagg gaagttccgc
     1741 cgataaccac tgaggcaatt acacgtagct caaaagaaac gccggcaacg gattcggcac
     1801 tgcctaaacg ggcggagaga atgaaaccgg caagtcctgc caatgctccg atcaccacat
     1861 aaacactgac taaggtacgg ttaatattca caccggctaa acgggctgct tccggattgc
     1921 cacctaccga gtacacatag cgtccccagc gggttttatg caatgcgaag taaccgataa
     1981 tggcgactac ggcaaaaatc actaccggca ccggtacgcc taaaatatcg ccacgtcccc
     2041 accagcggta accttcgtca aatccggcaa ttggcgagcc gttatttaac acaagtgtta
     2101 aaccacgcca aattgtcata ccgccaagcg tgataataaa cggtggcagt ttgagtttag
     2161 tgacgcctaa gccgtgtaac caaccaatga aagtgcctaa acctaaacag atactcaaac
     2221 ctatcagcca gctcattccg ccccaagcac cggcttctag cgttaccgta ttatcgcctt
     2281 tgataatata ggccgcgaac attgcggtaa cagcaaggat tgagccgaca gagagatcga
     2341 tccctgcagt taagatgacg aaagtcattc ctaccgccat aatgccgaaa atcgacactt
     2401 cggttaaaac gttatagatg ttgcgttgcg ataaaaatgc cccgttttgt gaagtgaaga
     2461 aaataatcag taagatcaag aaaatcagta cgccgaaacg ttcaaagaag gcgataaaat
     2521 cgatttttcc tttgtcatcg accataccca tattttttag aaattgcgtt gtcatacaaa
     2581 cctctcttat gctgccgctt tacgctgaac gccaacagcc atcattgaca ttaatttttc
     2641 ttcggtggca tcatcgccgt gaatttcgcc agttacccga ccttcggaaa gagtgataat
     2701 gcggtcggaa atcgccataa tttccggtaa atcggaggaa atcactaata ccgcaacacc
     2761 ttgttttgcc atatcaaaca gcacttggtg aacctcagat tttgccccaa catcaatacc
     2821 tcgtgtcggc tcatcaacaa ttagtacttt cgggttgagt gccatacaac gggctaaaat
     2881 cactttttgc tgattaccac ccgataattt gcgggcttca agttcgctac ttgccatttt
     2941 gatgcgtaac gcttggcggt aggtttcgat taaatcatct tctttttgat tatcgacaaa
     3001 caagttaccc ttcaataatt tgcttaaaat cggcagggtc atattggttt taatcggtaa
     3061 accgagaact aagccctctt ttttgcgatc ttccggcaca agggcaaccc ctttttccaa
     3121 agcatctaac ggcgaggtgg cagcataagg cttaccgtct aggctgattt catcagccgt
     3181 ataattttct accccaaaca agcaacgggc aatttcagtt cgccctgcgc caactaagcc
     3241 ggcgatccct aatacttcac cctcgtgaat gttaaaagag acaccgtgga gagcaatgcc
     3301 gtgtggatcg aatgccggtt tttcccgatg cagatttttc acagctaaac gtattggtcg
     3361 gtgggtatgg tgagtctctt ctggtggacg gcgagtaaag gcaacttcac gtcctaccat
     3421 cattttaata atttgatcga cattcacatt tttgacttca ccctcaccag aatagcgccc
     3481 gtcttggaaa acggtgaaac ggtcgcatag ggcaaacact tcgtttaagc ggtgggtcac
     3541 ataaatcacg ctaatgccac ggctttttaa atcacgcacg atttggtgta gtgtttccac
     3601 ttctttatca cttaaggcag cggacggttc gtccataata atcaacttag cgtttaaggt
     3661 cattgcacgg gcaatctcga ccatctgctg ttgtgccaca cttaaacggg aaacttgggt
     3721 gtcaggtttg atatttaagc cgagattatc cagcactaat tgtgcttcct cattcaccgc
     3781 tttttcattg acgaataaac ctttcaccgg ctctctgccc aaaaagaaat tttcagcaac
     3841 cgtcatattc ggtaacaagt taaattcttg ataaatcgtt acgatgcctt tgagttggcg
     3901 atcaaacggg gaatcgctca aacttaaggt ttcaccgtta aagataattt cgccacttgt
     3961 ttgtggctga gcgcctgaaa gtgcttttaa taaggtcgat tttcctgcac cgttttcacc
     4021 caacaatgcg tgaacttcgc cttttcccac agtcagtttc acgccattga gtgccataac
     4081 accagagaaa ctttttgtca gatctttcac ttcaagtaag ggagtagaca tacaacctcc
     4141 gtaaaaaaac gccctccggc ctcagccgga aggcagataa attattcgct gatttctgca
     4201 aaacgttctg cttcttgcag attatctttc aggataattt ttggcggata gtccgcaccg
     4261 ctcacttctt tgctctcacg gatattgcca accacttgct ctaatgcggt gcttaccgca
     4321 aaacttgggc gttggtcagc ggtgagatac aaccagccat ctttcacacg tgcaagagcc
     4381 tcaggggttg agtcaaagcc ggttactaaa atatcgccgg ctttcaaacc ttggctacgc
     4441 aatgcttcaa tcgcaccaag tgccatatcg tcattcgctg aaataatcac ttctggtttc
     4501 tcttttaagg ttggtaacac actttcaata atgcgtaatc cctcagaacg gagccagtta
     4561 ccggtttgat caaccacgat tttatatttg tcaccaccgg cagctaattc atcacgaata
     4621 cctttggtac gttcaatgtt agaggttgaa cccggctggc cggttaaaag aataattttt
     4681 gccccattcg ggtatttggc tttcactgct tttgcgactt cttgaccgcc tgtgtagtta
     4741 tttgccccaa agtgtggaac cggcttactg ctttcaactt ttcggtctaa tgtcgcagca
     4801 ggaatttttt ctttgataat ttcttccact gcacctgaaa tcgcattcac atcattcggg
     4861 gaaatgataa tgcctttagc accacgggta attgcatttt ctaagtcaga agcctgctta
     4921 gtagaagaac tttgcccgtc taatacttgc aatttgatct ccaacttttt actggtttct
     4981 accgctactt tttgtagttg aacttcaaac gggctggata ggttcggtaa gctaaatacc
     5041 acaagctcat ctttcgcaaa gctgttcatt gctaagccta acgttaaagc actcaataca
     5101 aatttaatac gctttttcat tacaaaatcc tctttttaag atgggaattg acggcgaata
     5161 ttgccaatgt tacttcaaac tgcgaaggaa acttaagtct tatttcaata ataaacctca
     5221 atgaaataaa tttttcaatt tagaatatat cattcaaaat tttccaaacc aaatgctttg
     5281 tttcaaattt gttacgtaga tcacattttt aggaagagat aaatgcaagc ggtcaaaaca
     5341 ggtcgctttt ttgcaaaaat ttgaataaaa atgaccgctt gtgagatgaa aaccaataaa
     5401 aaagcggtga tttctcaccg ctaaacactc aaaaaagaaa tgtactcgtt attataaggt
     5461 tgggaaatta aatgccgctt ggctacgcac cgagctgtcc ggccaacggg ttgtgatggt
     5521 tttcatacgg gtgtagaaac gcacgccgtc tgtgccgtac acattgagag gcccgaaaat
     5581 agaggctttc caaccgccaa agcagtggaa cgccattggc acaggaattg gaatattcac
     5641 gcccaccata ccggcttgta catcttgggt gaattgacgt gctgaatcgc catctgcggt
     5701 gaaaattgca ctaccattgc cgtattggtg actgttaatg agtgcgatcc cttcggcata
     5761 atctttcaca cgcacaacag agagaaccgg tccgaagatt tcatcttgcc agatggtcat
     5821 ttcaggtgtc acgttatcaa acagcgtacc tccgacaaag taaccgtttt caaacccttc
     5881 gactttatag cctcgaccat cgacacagag tttcgccccc tgtgccaccc cttgatcgat
     5941 atagctctca attttggctt tatgctcttt ggaaatcacc ggccccatat cattttcaag
     6001 cacgccttgt ggtagtaagc ctgaaccgat tttcaatgct ttgaccttag gaattagctc
     6061 ttcaatgatt ttatcggcta attcatcacc aacaactacc gctaccgata gtgccataca
     6121 acgttcaccg gctgcaccaa atgctgcgcc cagtaaggca ttaattgtgc cttgtacatc
     6181 agcatccggc ataatcaaag cgtggttttt cgcaccgccc aaggcttgaa cccgtttgcc
     6241 gtttgctgag cctttctcat aaatatattg tgcaattgca gttgagccga caaaactcac
     6301 cgcctgaatg cgagagtcgg ttaaaagaat atctaccgct tctttatcac cttgcaccac
     6361 attgaataca ccgtccggca agccggcttc ttttaataat tctgccaagc gaatagacac
     6421 acttgggtct ttttcagacg gttttaaaac gaaagtgtta ccgcaagcaa gtgccactgg
     6481 gaacatccac atcggtacca ttgccgggaa attgaacggg gtaatgcctg ccactacgcc
     6541 caacggttgc tggattgagt gaatatcaat gccacgccct gcattggcgg agaactcacc
     6601 tttttgtaag tgtggaatac cagtggcaaa ttccaccact tctaaaccac gggttaattc
     6661 gccaatcgca tcggaataga ttttgccgtg ttctgagctg attaaacgag ccaactcatc
     6721 aaagtttgct tccaataact ctttgaattt aaataaaatt ctggcacggc gtagtggtga
     6781 ttgttgtgac cagcttttga aagcctgatc ggccgctgca attgccgcat cgacttcgtt
     6841 tggcaggctt aatttgactt ttttggtctc ttcaccggtt gcgggattaa ataccgaggt
     6901 aacacgctgg ctttggcttt caacgactgc accgttaata aaattttgga caaattggct
     6961 cattggaggc tccttatcaa ctgattgaga ggaaaaacgg ataaaataca gccgataaac
     7021 taccgctaaa aatggaaaat atcaatacat aatactaaaa aatgaaaatt ttatttcatt
     7081 tttgtgatct aagtagcaag tttacagatt gccggtatta aaatgagaca aaatttcgta
     7141 tagtttgaaa gcgtattcca tttcgttaag cgaggtttcc tatgtctagt ccattattgt
     7201 ctaaacccaa tttcaaccaa catgaagggt taattcagca cattacccct gaaaatgcac
     7261 agtgggaata tgttggattt gatgtttatc agctcagtaa gcaacaaatt acgctggaaa
     7321 gtggtgaaaa tgaactttgt ctagtctttg tgaccggttt tggctctgtc tatgttgatg
     7381 attatgcttt tgaaaatatc ggcaaccgta ccacgccatt tgaaaaaatt ccgccttatg
     7441 cggtctatat cccgccacac aaaagcgtgt tggttaaaac cgaactcaat ttagaattgg
     7501 cagtgtgcaa agcaccaagt cagggtaatt atccggtgcg tttgattagc ccgaaccata
     7561 tcggtgtgga aaaacggggc tttggcaaca atcaacgctt ggtgcataat attctgccgg
     7621 aaaccgaagc agccgacagt ttgctggtgg tggaagtctt taccgatgaa ggcaatacca
     7681 gttcctaccc aagccacaag cacgatgaca aacactctac cgaagaaacc tatttggaag
     7741 agacctacta ccaccgcttc gatccaccac aaggttttgc aatgcaacgg gtttataccg
     7801 atgatcgcac acttgatgaa tgtatggcgg tgtatgataa aaatgtggtt aaagtgcctc
     7861 gtggctacca ccctgttgct accattgccg gctataacaa ctactaccta aatgttatgg
     7921 cagggccggt acgcaaatgg aaatttactt gggaacaaga tcatctttgg gtgaacagtg
     7981 aaacctataa agccaaattt gagtaatgca agcggtcttt ttccaccaat tttttacaaa
     8041 ataagggatt aaaaatggga cgcttttggc gtcccattcg gttatacttt catacaaaga
     8101 tattttattt ctaaaaactc ttcaataccg tacttcgaac cttcccgccc aagtccagac
     8161 tctttccagc cgccgaacgg agcgatttcg ttactgatga tcccctcatt aatcccgaca
     8221 atgccatatt ccaactgctc cgatactcgc caaattcgcc cgatattttg gctgaataag
     8281 taagccgcca aaccaaactc agtatcattc gcccactgga taacctcttc ttcggtttca
     8341 aatttgaaaa tcggggcaag gggagcaaag gtttcctcac gagccacttt catcgcttga
     8401 gtgacatttt tcagaatggt tggctggaag aatgtgccac ccagtgcgtg gcgttcaccg
     8461 cctaacacca gttctgcccc aagtgaaagg gcatcgttaa tgtggctttc gactttttcc
     8521 accgctcgtt cactaattag tgcacctatc gtgacctctt cctcaaatgg cgagccaagc
     8581 ttgatttgag ccactttctc actcaatttt gcaagaaatt gctcataaat gcccgcttgc
     8641 acataaattc ggttagcaca gacgcaggtt tgcccaccgt tacggaattt agaggcaaac
     8701 acgccctcaa ccgctgtatc tagatccgca tcatcaaaca caatcgccgg tgcattaccg
     8761 cctagctcca atgccaattt ttttaccgtc cctgccgatt gttgcattaa aattttgccg
     8821 acacgggtgg agccggtaaa ggtgagtttg cgtacggtcg gattagtgct caactcccgc
     8881 cctacacctt cgacatcgct actggtaata atgttaaata cccctttggg aatacctgct
     8941 tgatccgcta attgggctaa tgctaaggca gaaagcgggg tttctgccgc cggtttaatc
     9001 acaatcgcac aacctgccgc taacgccggt gccgctttac gggtaatcat tgcatttggg
     9061 aaattccacg gtgtaattgc tgccaccacg ccaatgggtt gtttagtcac aaacaagcgg
     9121 cgaccggctt tatcttgtgg caagacatcg ccataaatcc gcttgctttc ttcggcaaac
     9181 cactcgataa aactggctcc ataggcaatc tcgcctcgac tttctgccaa tggtttaccc
     9241 tgttctagac ttaaaatctg ggcgagttct tcttggtttt gcataatcag ctcaaaccat
     9301 ttacgcaaaa tcacggaacg ctctttgggc aataatgcct gccatttttt ctgggcaact
     9361 gcggctgctt caatcgcttg agcggtttct tccgtgccta aatcagccac ctcaccgatt
     9421 ttctcaccat tagtcggatt ctgtaccgta aaggttttcc cattttggct tgaaacaaat
     9481 ttaccgttaa tataggcttg gaaacggagt agcaaaaatt tgtgatttgg cataatcact
     9541 ccttgaatgg ttaaaaagag aacaatattg actataatcc aatttcagta aagagaaaag
     9601 agctgaaaaa taacttttta ctcaataata aagcacctta gacaagcgtt cttctaaggt
     9661 gcagccattt attattgaga attaacttaa attctctaca tatttaataa ttaagataca
     9721 atcattggag cccatacgaa tccaaaagca agcccaacag caaccccaac taaagctgga
     9781 agcataaacg gatgatctat aatatatttg ccagcacgag ttgaacccgt agtatctaat
     9841 tccatcgctg ctaatgaagt tgggtaggtt ggcaggataa aaatgcctgt aattgcaatg
     9901 aaagaagcca aaattgccca gttagggatc cccaagctta ctgctaatgg aataataaga
     9961 gcagaagttg acccttgtga ataaagtaat gcacaagtaa aaaagagtac tacagctaac
    10021 aacattggat attcagttaa aatatttcca atagaggctt taatttctat taaatgtgca
    10081 tcgacaaaag tcatacctaa tgtaacaatc ccgataatta ccgcaataga agtcattcct
    10141 gagcggaaaa ttggactagc cacaatcgta tcaggtttaa tttttcctac caacatcatt
    10201 aagcacgaag aggctaacat catcacaata attatatctc gggtactcat tgacttccca
    10261 ttttcatata ctggctttaa ccctggaacg gctgcaagta gaacaaccaa tacagttgct
    10321 agtaagaaaa tgccaatcga tagttttgct ccttttgaat aggtagattc actcgctaac
    10381 ttacgagatg ggctgacgat tcctgctttt aaacgttcta aataaacaac atcattttgc
    10441 aattcacagc cctgcttaga agcaacaaat gcagcaacca tagaggcaat aaaagaaaca
    10501 ggtaagcata ctgctattac ttgaaaaaat gtaacactgt tgttttccat tactgctatc
    10561 atagccgcca ttgcagcact caatggagaa cctgcaatag ctaattgaga agacacaacc
    10621 gagccggcta atgctcttga agggcgaata ccactctctt ttgccacttc tgcaatcaca
    10681 ggtaaggtgg aaaagacgat aaaacctgta ccagccataa tcgtcattaa ccaagtaatc
    10741 atcggtgcaa taaagttaat atatttagga tttttacgca tcaatacttc cgcataacga
    10801 acaagtaaat ccatacctcc tactgcttgt aacacagcag cacctattac aacagtcata
    10861 ataatcagca ttacatcaac tggaatagaa cccataggta aaccaaaacc tagagttaga
    10921 atcgcaagcc ctaaaccacc atatagtcct attcctaagc ccccagaacg cagtcctaaa
    10981 tagattgcag caagtaccac aaagatttct gcataaatca tatccatctc cttaaattaa
    11041 tgagtttgat accaatcaat tgctttttta accaatacca acgttgaatc tacataacgc
    11101 attggctcac gctctatttc ttgagctaaa ataataggta cttctgtaca acctaaaata
    11161 attacttctg cacctaaacg aatgagttca tcacgttgtt gtaacattag ctctgtggct
    11221 ttctctaact cacctgattt taataaatag atactatcca ttactgcctt ttgaccattt
    11281 tctgtcgggc aaataaaagt cagtccttgt gcttcaagct gttttttgta taggtctacc
    11341 gccaaagttg catcagttgc caacaatcca acccgccatt ttccacactt caaaacctca
    11401 tcaaccacac aatcaatcat acttagcatc tctacctgac ttttggcctt caagtgttca
    11461 aaccaataat gtgcagtatt acatgcaata atgatgcagg ttgcccctgc actctcaagc
    11521 ccttcaatat atttttccat taccggagcc ggattctctc catttgctaa aatatagcga
    11581 gttctatctg gtatgtcggg aatagaggaa atcaataatg gaatatgagc ttgatcacaa
    11641 tcagctggtg ttaagcggat aaatttttgg aacatatctg ctgttgctgc aggtcccatt
    11701 ccacctaaaa tgccaataat atttcttgcc atacacttct ccttataaga tttaatttac
    11761 tgcgatgact tatacaaaca agttatgcaa aaaagaaatg caataaatcg aatcagtatg
    11821 caaaaaatgc aacaaagctc tttatagat
//
LOCUS       DANLZD010000085        11601 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.085, whole genome shotgun sequence.
ACCESSION   DANLZD010000085 DANLZD010000000
VERSION     DANLZD010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11601)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11601)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11601
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.085"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..721)
                     /gene="rffM"
                     /locus_tag="PXE26_001651"
     CDS             complement(<1..721)
                     /gene="rffM"
                     /locus_tag="PXE26_001651"
                     /EC_number="2.4.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     N-acetylmannosaminouronosyltransferase"
                     /protein_id="HDL5594220.1"
                     /translation="MFDKVIIRGIALQAVKNREIFANWLMNEKRIQFGRLVAINAEKV
                     ILSEKNPLLRRVIDEAEFNYADGISVVQSIRKKYPNYKIERIAGADLWETLMQRAGAL
                     NVPVFLVGSSADTLTKVEAKLAQWKVNIVGRQNGYFKAEQEQDVIEQIKASGAKFISV
                     AMGTPKQELFIQQLQQQYPQALYMGVGGTYDVFAGKVKRAPKIWQNLGLEWLYRLLKQ
                     PTRWQRQLNLLKYAYYYLTNQL"
     gene            complement(711..1982)
                     /locus_tag="PXE26_001652"
     CDS             complement(711..1982)
                     /locus_tag="PXE26_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WzyE family oligosaccharide polymerase"
                     /protein_id="HDL5594221.1"
                     /translation="MNNLIPLGGFYLVSVGLFFSLLYQLYQKSGISFHLLFSLLYFVT
                     FYAGFPFSLIMAFGFDYPLPELKTQWQVFTAAGVGYLIYYVVYSRLWSAVSQPTALVA
                     NFQAKTTACILAAVAVVALLYFLYLNGFLLFKLEKYSQLFAKDRVILSALKRFFYFLL
                     PALLIFCFLYKNKTAWWALLIVGGAFGILSYVAVGGTWANLALAVGFFLLIGLQQGYL
                     SLSKVIAVSLIGVVAMFFLALARYKLTLSGSEMIYTFLYLSRDTFSPWENLARVFSNE
                     VEYQGLMPIVRDFYVYIPQSLWQERPEIVWNTANYFTKVILGNQSGLAISPTLLGSFY
                     IMGGFSVMALGMGIVAAMIKALDNLFAYAKACNSALLQAYCFGNLFNLIVLVREGIDA
                     FVSRFCFFTLIFMACYLLAKILSMGKNNNVR"
     gene            complement(1975..3045)
                     /locus_tag="PXE26_001653"
     CDS             complement(1975..3045)
                     /locus_tag="PXE26_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDP-N-acetylfucosamine:lipid II
                     N-acetylfucosaminyltransferase"
                     /protein_id="HDL5594222.1"
                     /translation="MLPIYHILGSEIEHHNQQVLTFFQQELLPLLPDSEHFFYVVGKP
                     SLQTAFPHLRIKQFSSQKAIANALIAKKRQNPTACFLLHGQFNPWIWLAIALGRLPTT
                     NLIWHIWGADLYEMATSWKFKLFYPFRRVAQQKILQVWATRGDLDHLWRNMRTRSEQD
                     HLIYFPTKLGDQIKISPTQNDRLTILLGNSGDPANELIQALSEIHQRLGNNVRIIIPM
                     GYPENNESYIRQVEAYSKRLFLAENLQILRKKLSFEEYVTLLSHCDLGYFNFKRQQGI
                     GTISLLISHNVPCVLHSANPFGLDLQAEKVPYLLAENLTASQIQTTKQQLKSIDKNRI
                     AFFAPGYTKLWQQRLIELMQNE"
     gene            3232..4653
                     /gene="glnA"
                     /locus_tag="PXE26_001654"
     CDS             3232..4653
                     /gene="glnA"
                     /locus_tag="PXE26_001654"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011298219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HDL5594223.1"
                     /translation="MSNAIANVSKLIQDNDIKFVLLKFTDIKGKEHGVSLPVSLVAND
                     LEDLFEEGKMFDGSSVEGWKAINKADMLLMPIAETAVVDPFARIPTLSIRCSIYDPNT
                     MQSYDRDPRSIATRAENYLKSTGIADSVMFGPEPEFFLFDDVRFSTEMNNVSYRIDDV
                     EAAWNTNRKFEEGNKAYRPLKKGGYCAVAPIDTAHDIRSEMCLLMEEMGLVIEAHHHE
                     VATAGQNEIATRFNSLTLKADETQIYKYIVQNVAVEHGKTACFMPKPFAGDNGSGMHC
                     NMSLSKDGKNVFMGDKYAGLSETALYYIGGIIKHAKALNAFTNPTTNSYKRLVPGFEA
                     PVLLAYSASNRSASIRIPAVTSPKATRVEARFPDPMANPYLCFAALLMAGLDGVINKI
                     HPGDAMDKNLYDLPPEELKDIPTVASSLESALDALSNDFEFLTQGGVFTKDFIDAYIG
                     IRRKEVERVNMTPHPVEFELYYS"
     gene            complement(4697..5840)
                     /gene="rffA"
                     /locus_tag="PXE26_001655"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /pseudo
     CDS             complement(4697..5840)
                     /gene="rffA"
                     /locus_tag="PXE26_001655"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251256.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxygalactose transaminase"
     gene            complement(5827..6471)
                     /gene="rffC"
                     /locus_tag="PXE26_001656"
                     /gene_synonym="wecD"
     CDS             complement(5827..6471)
                     /gene="rffC"
                     /locus_tag="PXE26_001656"
                     /gene_synonym="wecD"
                     /EC_number="2.3.1.210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxy-D-galactose
                     acyltransferase"
                     /protein_id="HDL5594224.1"
                     /translation="MKPDQWLSDFFGREIVQVKVAADDFRQIARLQKQGFVLVEGELE
                     FELALATFSENMTACRPADMADLPDLNLLFGSAFPDSRFRSPYFSREENQRFYRTWIE
                     NAVKGKFDDIGLVQCNADGQIQGAVTVRLLAQQQAKIGLLAVKPDCRQQGIGSELLNA
                     AIAWAKQQNAKKLMITTQLSNQKAIRFYQAFGASIKAVYYWFYPALEKYDDEQS"
     gene            complement(6468..7715)
                     /gene="wecC"
                     /locus_tag="PXE26_001657"
     CDS             complement(6468..7715)
                     /gene="wecC"
                     /locus_tag="PXE26_001657"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HDL5594225.1"
                     /translation="MMSKTEFNTICILGLGYIGLPTSVVFANAGKQVIGVDINPQVVA
                     SLNQGNIHIIEPDLQTAFTQAVKKGNFFATAKPQPADAFIIAVPTPLCGKQPDLTYIQ
                     NAAAMIAPCLRKGNLVVLESTSPVGTTENLAEWLSQARPDLAFPADVSIAYCPERVLP
                     GNIMTELVENDRIIGGLSEQCSQQAVDLYQIFAKGRCVTTTARTAEMCKLVENSFRDV
                     NIAFANEISMICDALKINVWELIELANLHPRVNILQPGAGVGGHCLAVDPWFIVSTSP
                     QQARLIRTAREVNDSKPQWVIEQVKTSVADCAMEQDCKPSELTIACLGLAFKPNIDDL
                     RESPALAITRQLAAWHQGSLLAVEPNIQQLAGEKITLVDLNTALSQADILVLLVDHTS
                     FKQISREQIRQRHIIDCRGVWVR"
     gene            complement(7756..8568)
                     /locus_tag="PXE26_001658"
     CDS             complement(7756..8568)
                     /locus_tag="PXE26_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS chain length-determining protein"
                     /protein_id="HDL5594226.1"
                     /translation="MKTLFYRLLVLILFAAIGAGAGYGLSYTQPEKWKVTAQFEQPTI
                     PDLGNYYSLLSTYHFLNSNSQEANSQTAQQQASEQVYAEFKRNLTSADLLQAYLLQTE
                     AVKLKAQVAKKSPAVVAAELVEQFRFEKDMATSADNVSLIAENAEEAQKLLADFIPLV
                     NTQARDKLNADLIAKWKVLFQQIKTASELNINGKQGSQDWAAKLQMMRSVQPLDNQLT
                     AYRLVKSPSVPLKSESPDPPILADDWGIKWLTAGLYAQFCGESESSTCGTLI"
     gene            complement(8579..9643)
                     /gene="wecA"
                     /locus_tag="PXE26_001659"
     CDS             complement(8579..9643)
                     /gene="wecA"
                     /locus_tag="PXE26_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--undecaprenyl-phosphate
                     N-acetylglucosaminephosphotransferase"
                     /protein_id="HDL5594227.1"
                     /translation="MWLTFLTVFIVSFLALIVMRPVAEFVGLVDKPNFRKRHQGLIPL
                     IGGIALFIGNLTFYFMQWQDMRLPELYLTAVTILLIIGVLDDRFDISPLLRAGIQAAL
                     AGAMIYSGLSLSSLGQIIAPFSIELGWLGIVFTVFITIGVINAFNMVDGIDGLLAGLS
                     SVSFAGLGTLMFINGEPSLGYWCFALIFVLLPYAMFNLSLFGAKWKVFMGDSGSMLIG
                     FTIIWILLLSTQGQGSPISPITGLWLIAVPLIDMVAVIIRRLKKGKSPFKPDRLHLHH
                     LMMRAGLTSRQALLVITLWAGFCSTIGVLGEVYYWNQWVMMLMFIGLFFLYAYSITHA
                     WRVTRFVRRLKRRAKRSKQL"
     gene            9785..11065
                     /gene="hemL"
                     /locus_tag="PXE26_001660"
     CDS             9785..11065
                     /gene="hemL"
                     /locus_tag="PXE26_001660"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HDL5594228.1"
                     /translation="MSISEQLFEQAQKVIPGGVNSPVRAFKGVGGTPVFIEKAEGAYI
                     TDSDGKQYIDYVGSWGPMVLGHNHPAIIDAVLKAVPKGLSFGAPTAAEITLAELVCKL
                     VPSIEMVRMVSSGTEATMSAIRLARGYTNRDKIIKFEGCYHGHSDSLLVKAGSGALTL
                     GQPSGPGVPADFAKHTLTCTYNDLDSVKAAFEQYPNEIACLIVEPVAGNMNCIPPQEG
                     FLQGLRDLCTQYGAVFIIDEVMTGFRVALGGAQSYYGVTPDLTTLGKIIGGGMPVGAF
                     GGKKEIMEYIAPTGPVYQAGTLSGNPIAMAAGLACLTELSKAGNETILAEKTKTLAEG
                     FKALADKHNVPLTVQYVGGMFGLFFTEQKAVNNFQEVMKCDAAKFNRFFHLMLEQGVY
                     LAPSAFEAGFMSLAHSDEDIARTLEAADKAFAQL"
BASE COUNT         3433 a         2694 c         2343 g         3131 t
ORIGIN      
        1 agagctgatt tgtcagatag taataggcat attttagtaa atttaattgt ctttgccagc
       61 gggttggctg tttcaatagt cgataaagcc attccagccc caaattttgc caaattttag
      121 gtgctcgttt cactttaccg gcaaacacat cgtaagtccc gccaacaccc atatataagg
      181 cttgtggata ttgttgttgt aactgttgga taaaaagttc ctgttttgga gttcccattg
      241 ccacactaat aaacttcgcg ccacttgctt taatttgctc tataacgtcc tgttcttgct
      301 ccgccttaaa atagccattc tgcctaccga caatattcac cttccattgt gccaattttg
      361 cttccacctt cgttagggta tccgccgagc tgccgaccaa aaacaccggc acatttaacg
      421 ctccggctct ttgcattaag gtttcccata aatcggctcc ggcaattcgc tctattttat
      481 agtttggata tttttttcga atcgattgaa caacactgat gccgtctgca tagttgaact
      541 cggcttcatc tatcactcgg cgtaacaacg gatttttttc cgacagaatc actttctcag
      601 cattaattgc cactaatctt ccgaactgaa tccgcttttc attcatcagc caatttgcaa
      661 aaatttcccg atttttgacc gcttgtaacg caatgccccg aatgatcact ttatcgaaca
      721 ttattatttt tccccattga aaggattttc gccagcaaat agcaagccat aaatatcagc
      781 gtgaaaaagc aaaaacggga aacaaatgca tcgattccct ctcgcactaa tacgatcaaa
      841 ttgaataaat tgccgaagca gtaggcttgc aacaaggcgg aattgcacgc tttggcgtaa
      901 gcgaataggt tatctaaggc tttaatcatg gcagctacta tccccattcc caacgccata
      961 acgctaaatc cgcccataat atagaaagag ccgagtaagg taggcgaaat agctaaccct
     1021 gattggttgc ctaaaatcac tttggtaaaa taattcgccg tattccagac gatctcaggg
     1081 cgttcttgcc ataaagattg tgggatatat acatagaaat cccgcacaat cggcattaaa
     1141 ccttgatatt ccacctcatt agaaaataca cgagccaaat tttcccaagg cgaaaaagta
     1201 tctcggctta aatataagaa ggtgtaaatc atctcgctac cggaaagggt aagtttgtaa
     1261 cgggctagag cgaggaagaa catcgccacc acgccgatta ggcttacggc aatcaccttt
     1321 gataacgaca gatagccttg ctgcaatcca atcaataaga aaaagccaac cgctagtgct
     1381 aaatttgccc atgtgccgcc cactgccaca tagcttaata tgccgaatgc cccaccaaca
     1441 atcagtaacg cccaccacgc tgttttattc ttatatagga agcaaaaaat taacaacgcc
     1501 ggcaataaaa agtagaaaaa tcgttttaat gccgaaagta tgaccctatc tttggcaaac
     1561 agttggctat atttttcgag tttgaaaagc agaaaaccgt ttaaataaag gaaatatagc
     1621 agggcaacaa ctgccacagc ggcaaggata caagcggtcg tttttgcctg aaaatttgca
     1681 acaagagcag ttggttgcga cacagcactc cacaagcgtg aatagacaac gtaataaatc
     1741 aaatagccaa cacctgctgc cgtaaaaact tgccattgtg tttttagctc cggcagcggg
     1801 taatcaaagc caaatgccat tattaacgaa aacggaaaac cggcgtaaaa agtaacaaaa
     1861 tagagcaaac taaacagtaa atggaaagaa atccccgatt tctgataaag ttgataaagt
     1921 aagctgaaaa atagcccgac agaaacaaga taaaatccgc caagtggtat taaattattc
     1981 attttgcatt aattcgatta atcgctgttg ccatagttta gtgtagcccg gagcaaaaaa
     2041 cgcaatgcgg tttttatcta tgctctttag ttgttgtttg gttgtttgaa tctgtgaagc
     2101 agtcagattt tccgccaaca aataaggcac tttttctgcc tgtagatcca acccaaacgg
     2161 attggctgaa tgtaacacac aaggtacatt atggctaatc aaaaggctta tcgtgccaat
     2221 gccttgctgg cgtttaaaat tgaaatagcc gagatcacaa tggctcaata acgtaacata
     2281 ctcttcaaag ctcagcttct tccgcaaaat ttgcaaattt tccgccaaaa ataaccgctt
     2341 gctataggct tccacctgcc gaatatagct ttcattattt tccgggtagc ccattggtat
     2401 gataatccgc acattgttcc ctagtcgttg atgaatctcg cttaaggctt gaataagctc
     2461 attcgctgga tcgcctgaat tgccgagcaa tatcgtcaag cgatcatttt gtgtggggct
     2521 aatttttatt tgatcaccta atttcgtggg gaaatagatt aaatgatcct gttctgatct
     2581 tgtacgcata tttcgccaca aatgatccag atcgcctctt gttgcccaaa cctgtaagat
     2641 tttttgttgg gcaacacgcc gaaacgggta aaacagctta aatttccacg aagttgccat
     2701 ttcatataaa tccgcccccc aaatatgcca aatcaggttg gtggtcggca atctgcctaa
     2761 ggctatcgcc agccaaatcc aagggttaaa ctgcccgtgt aacagaaaac aagcggtcgg
     2821 attttgccgt ttttttgcaa ttaaggcgtt cgcaatcgct ttttgtgaag agaactgctt
     2881 aatccgcaaa tgaggaaaag cagtttgcag tgaaggcttg cctaccacat aaaaaaaatg
     2941 ttcggagtct ggcaataacg gcaaaagctc ttgctgaaaa aaggttaaaa cctgttggtt
     3001 atgatgctca atctcggagc ctagaatatg ataaatcggc aacattacac gcttttctct
     3061 ccccaccata caaacaatat gcaagcggta agattttagc aaaaatttgc aacattactg
     3121 caacttcttt tagctttgaa acactaaaaa acatcacaca cttggttaaa aaatgctatg
     3181 ataaccgagc ttttttatta ttcatttatc ccaacgagga cttattttac tatgtcaaac
     3241 gcaatcgcta atgtatctaa actgattcaa gacaatgata ttaaatttgt cttattaaaa
     3301 tttactgata ttaaaggtaa agaacacggg gtttcgctcc ctgtcagctt agttgccaac
     3361 gatttggaag acttattcga ggaaggcaaa atgttcgacg gttcgtccgt agaaggttgg
     3421 aaggcaatta acaaagcaga tatgttgtta atgccgattg ctgaaaccgc tgtagttgac
     3481 cctttcgccc gtattcctac cctttctatt cgttgttcca tttacgaccc aaacacaatg
     3541 cagtcttatg accgtgaccc tcgctctatt gcaacccgtg ccgaaaacta cttgaaatcc
     3601 accggtatcg ccgatagcgt aatgtttgga cctgagcctg aatttttctt attcgatgat
     3661 gtgcgtttta gcaccgaaat gaacaatgtg tcataccgaa ttgacgatgt agaagcggct
     3721 tggaatacca accgtaaatt tgaagaaggc aacaaagcct atcgtccgtt gaaaaaaggc
     3781 ggctactgtg cggttgcacc gattgatacc gcccacgata ttcgctccga aatgtgttta
     3841 ttgatggaag agatgggttt agtgattgaa gctcaccacc acgaagttgc gacagccgga
     3901 caaaatgaga tcgcaacccg attcaacagc ctgaccttaa aagccgatga aacccaaatc
     3961 tataaataca tcgtgcaaaa tgttgccgta gaacacggaa aaaccgcttg ctttatgcca
     4021 aaaccgttcg ccggcgacaa cggctcggga atgcactgta atatgtcatt aagcaaagac
     4081 ggcaaaaatg tgtttatggg cgataaatac gccggcttat ctgaaactgc cctctactat
     4141 attggcggta tcattaaaca cgcaaaagca ttaaatgcct ttactaaccc aaccacgaac
     4201 tcttataaac gtttagtgcc gggttttgaa gcaccggtgt tattggcata ttctgcaagt
     4261 aaccgctctg cctctatccg tattccggct gtgaccagtc cgaaagcgac ccgtgtagaa
     4321 gcacgcttcc cggatccaat ggcaaaccca tacctttgct ttgccgccct gttaatggct
     4381 ggcttagacg gtgtgatcaa caaaatccac ccgggcgatg caatggataa aaacttatac
     4441 gatttaccgc cggaagagtt aaaagatatt ccaacggttg cctcgtcttt agaatccgct
     4501 cttgacgcat taagcaatga ttttgaattc ttaacacaag gtggcgtgtt cacgaaagac
     4561 tttattgatg cttatatcgg tattcgtcgc aaagaggtgg aacgtgtaaa tatgactccg
     4621 cacccggtag aatttgaact ttactattca tagtaacaac atatagcaaa aaacggctga
     4681 aacactcagc cgttttttat tgattgaaga aagcaagcac tgcttgaata acacgctctt
     4741 gctcctgctt actcaaatta taaaacagtg gcaatcttac caaccgttcg ctttctaagg
     4801 tagtaaagcg atcatcacct gctaatcgac ctaatttctg ccctgccgga ctgctgtgca
     4861 acggcacata atgaaacacg gttaagatat tctgtgcctt cataaaatca ataaaagcag
     4921 ttctctgctt caagtcactt agctttaagt agaacaaatg cccgttatgg cgacaatatt
     4981 cgccaatgcg aggaagctcg cacttagctg tttgggcaag tggcaaaaag gcttgatagt
     5041 aattgtgcca aagggttaaa cgctgttggt tgattttatc tgcctctata agctgagcat
     5101 acaaataagc cgcttgaatt tccgacatta aaaaacttga accaatatcc tgccagcgat
     5161 atttatctac ctcaccacga aaaaattggc tacggttagt gcctttctct ctgatgattt
     5221 ccgctttttc cagcaaatgc ctcattaatc acgatcgccc caccttcacc gccagcggta
     5281 tagtttttgg tttcgtgaaa actatagcaa ccaatatgcc cgatggaacc taacgcccta
     5341 cctttataaa acgaattgac tgcctgtgcc gcatcttcta ccacataaag cccgtatttt
     5401 tcggctgttg ccattattga atccatatca caagcaatgc cggcataatg caccggcaca
     5461 atcactttgg tttttggggt aatggcttgc tcaattttgc gttcatcaat attcattgta
     5521 tccggacgaa tatccacaaa cacaatcttt gccccacgca acgcaaacgc atttgcagta
     5581 gagacaaaag tatagctcgg cataatcact tcatcgtccg gctgaatatc cagcagtatt
     5641 gccgccatct ctaacgcagc cgtgcaagaa ggggtaagca acactttgct acgggccagg
     5701 ttttcaagcc actgctcaca taagcgggtg aatttaccac cgcccgaaag ctgccctgtt
     5761 gccatcgcct gttctatata ggcttgctcc gcccccacaa ccgggggttg attaaacgga
     5821 ataaaatcag gattgttcat catcgtattt ttccaaagca gggtaaaacc aataatacac
     5881 cgccttaatg cttgcaccaa acgcttgata aaaacgaatc gctttctggt tactcagctg
     5941 agtggtaatc atcagttttt tcgcattttg ctgtttcgcc cacgctatcg cagcatttaa
     6001 caattccgag ccaatacctt gttgtcggca atcaggcttt accgccaata atccgatttt
     6061 cgcttgctgt tgggcaagta agcgaaccgt taccgcccct tgaatttgcc cgtcagcatt
     6121 gcattgaacc aagccaatat catcaaactt gccttttacc gcattttcaa tccaagtccg
     6181 gtaaaagcgt tgattctctt cccttgaaaa atagggcgaa cgaaaccggc tatcgggaaa
     6241 tgccgaacca aacaataagt tcaagtcggg caaatctgcc atatccgccg ggcgacaagc
     6301 ggtcatattt tcagaaaatg ttgcaagtgc cagctcaaat tccaattctc cctccacaag
     6361 tacaaaacct tgtttttgca acctagcgat ttgcctaaaa tcatcagccg ctacttttac
     6421 ttgcacaatt tctctaccga aaaaatcgga cagccattga tccggcttca tcttacccac
     6481 actcctcgac aatcaataat atgccgttgc ctgatctgtt cccttgaaat ttgcttaaat
     6541 gaagtgtgat ccactaacaa gactaaaatg tctgcctgcg aaagtgcggt gttgagatcg
     6601 actaaggtga ttttttcgcc agccagctgt tgaatatttg gctcaaccgc caacaggcta
     6661 ccctgatgcc aagcggcaag ttgccgggta atcgctaatg ccgggctttc ccgcaaatca
     6721 tcaatattcg gcttgaaagc tagccctaaa caagcgatgg ttagctcact tggcttacaa
     6781 tcttgctcca tcgcacagtc tgcgaccgat gttttcactt gctcgattac ccattgcggt
     6841 ttgctgtcat tcacttctcg tgccgtgcga ataaggcgag cctgttgggg cgatgtggaa
     6901 acgataaacc acgggtcaac cgccaaacaa tgtccgccca cccctgctcc gggctggaga
     6961 atatttactc tcgggtgaag atttgccaat tcaattagct cccacacatt gatcttcaac
     7021 gcatcacaaa tcattgaaat ttcattggca aaggcaatgt tcacatcacg aaagctgttt
     7081 tccaccaact tgcacatctc cgctgtgcga gctgtggtgg tgacacaacg tccttttgca
     7141 aaaatttggt ataaatcgac cgcttgttga ctgcattgtt cgcttaatcc gccgataatg
     7201 cggtcatttt caaccaattc cgtcattata ttacccggca aaacacgttc agggcagtag
     7261 gcaatagaca catcggctgg aaaggctaaa tcagggcgag cttggcttag ccattcggct
     7321 aaattttctg ttgtaccgac aggcgaagtg gactccagca ccaccaaatt ccctttacgc
     7381 aaacaagggg caatcatagc ggcggcattt tgaatataag tgagatcggg ctgcttcccg
     7441 caaagtgggg ttggcacggc gatgataaaa gcatcggccg gttgcggttt ggcagttgca
     7501 aaaaaattac cttttttgac cgcttgtgtg aaggcagttt gtaaatccgg ctcgataata
     7561 tgaatgttgc cttgattaag gcttgccacc acttgcggat taatatccac cccaattact
     7621 tgcttgccgg cattggcaaa aacgactgag gtcggcaagc cgatatagcc taaccccaga
     7681 atacaaatag tgttaaattc agttttactc atcatcagtt acaaagagaa atggcacact
     7741 aaattgtgtg ccattttaga ttaaagttcc gcaggttgag ctttcgcttt caccgcaaaa
     7801 ctgagcataa agcccagcag taagccactt aatgccccaa tcatcagcca aaataggcgg
     7861 atcaggcgat tctgatttaa gtggaacgct aggcgattta accaagcgat aagctgtaag
     7921 ttggttgtct aacggctgaa cagaacgcat catttgcagt ttagctgccc aatcttgtga
     7981 gccttgctta ccgttaatat tcaactccga agcagtttta atttgctgga acaagacttt
     8041 ccatttcgca attaaatcgg cgtttaattt atctcgagct tgggtgttta ccaacggaat
     8101 aaaatcggct aataattttt gagcctcttc cgcattttct gcaattaagc tgacattatc
     8161 tgccgaagtt gccatatctt tttcaaaacg gaattgttca actaattcag ccgccaccac
     8221 cgccggtgat ttctttgcaa cctgagcttt taatttcacc gcttctgttt gtagcaaata
     8281 ggcttgaagc aagtcggcgg acgtgaggtt gcgtttaaat tccgcataaa cctgctcact
     8341 tgcctgttgc tgtgccgttt ggctattcgc ttcttggcta ttactattca aaaaatggta
     8401 ggtggaaagt aacgagtaat aattacctaa atcgggaata gtcggttgct caaattgagc
     8461 ggtcactttc catttttcag gttgagtata actcagccca taaccggcac ctgccccgat
     8521 agcagcaaat aaaattagca ctaaaagtcg ataaaataag gttttcacaa catatccttt
     8581 aaagttgttt gctacgtttt gcacggcgtt ttagacggcg aacaaaacgg gttacacgcc
     8641 aagcgtgggt aatggaatag gcgtatagga aaaacagccc gataaacatt agcatcatca
     8701 cccactgatt ccaataatac acctcgccta ataccccaat ggtggaacaa aatcccgccc
     8761 agagggtaat caccaataat gcttggcgag aggtaagccc tgctcgcatc attaaatggt
     8821 gtaggtgcaa gcggtctggt ttgaacggac ttttaccttt tttcaaacgg cggataatca
     8881 ccgcaaccat atcaattaac ggcacggcaa tcagccacaa accggtaatc gggctaattg
     8941 gcgagccttg cccttgggtg cttaacagca gaatccaaat aatggtaaag ccgatcagca
     9001 tactgcctga gtcgcccata aacactttcc atttcgcccc aaacaggctc aaattgaaca
     9061 ttgcatacgg caacaacaca aagataaggg caaagcacca atagcccaaa cttggttcgc
     9121 cattaatgaa cattaaagtg ccaagaccgg caaaactcac gctggaaagc cctgctaata
     9181 agccatcaat cccatctacc atattaaacg cattaataac gccaatggtg ataaacacgg
     9241 taaagacaat gccgagccaa cctaattcta tactaaaggg ggcaataatt tgccctaaac
     9301 tgctgagcga caagccactg taaatcatcg ccccagctag tgctgcttga atcccggcac
     9361 gcagtaatgg gctgatgtca aatcggtcat ctaacacgcc gataatcagc aaaatagtta
     9421 ccgctgtcag atacagttcc ggcagccgca tatcttgcca ctgcataaaa tagaaagtga
     9481 gattgccgat aaataatgca ataccaccga ttaacggaat caacccctga tggcgtttac
     9541 ggaagttggg cttatctacc aaaccaacaa attccgccac cggacgcatc acaatcaggg
     9601 ctaaaaaaga aacaataaat acggttaaaa aagtaagcca catacaggga ttgcctcaaa
     9661 aaatgagtca taaaatagga atgcagaata gcataaggca acaaaatcgt aaatttttta
     9721 gcgaaaacaa gggcttttca gtacaataac aggcaaattt ttacatcaaa agaaaggaat
     9781 tgatatgtct atttcagaac aactgtttga acaagcccaa aaagtgattc cgggcggtgt
     9841 gaactcccct gtgcgtgcat ttaaaggcgt gggcggcaca ccggttttta ttgaaaaagc
     9901 cgaaggtgct tatattaccg acagcgacgg caaacaatat atcgactatg tcggctcttg
     9961 ggggccaatg gtactcgggc ataaccaccc ggcgattatt gatgcggtgc taaaagccgt
    10021 gccaaaaggc ttaagtttcg gtgccccaac ggcagcagaa atcacacttg ccgaattagt
    10081 gtgcaaatta gtaccttcta ttgaaatggt gagaatggtg agcagcggaa cagaggcaac
    10141 aatgtctgcc attcgtttgg ctcgtggcta taccaaccga gataaaatca tcaaatttga
    10201 aggctgctac cacgggcatt ccgattctct gttagtaaaa gccggttcag gtgctttaac
    10261 cctcggtcag ccaagcggcc cgggcgtacc cgctgatttc gccaagcata cgcttacttg
    10321 cacctataat gatttagatt cagtaaaagc agcatttgag caatacccaa atgagatcgc
    10381 ttgtttaatt gttgagcctg ttgccggcaa tatgaactgc attccgccac aagaaggctt
    10441 tttacaaggc ttacgtgatc tttgcacaca atatggtgcg gtatttatta ttgatgaagt
    10501 aatgaccggc ttccgtgtcg cactcggtgg ggctcaatct tactatgggg taacaccgga
    10561 tttaaccaca ctcggcaaaa ttatcggcgg cggaatgccg gtgggggcat ttggtggtaa
    10621 aaaagagatt atggaataca tcgctccaac tggcccggtt taccaagccg gcacgctctc
    10681 aggcaacccg attgcaatgg ctgcaggttt ggcatgctta actgaattat caaaagcagg
    10741 aaatgaaacc attttagcgg aaaaaaccaa aaccctcgct gaaggcttta aagctcttgc
    10801 agataagcac aatgtgccat taacggtaca atatgtcggc ggaatgttcg gcttattctt
    10861 caccgaacaa aaagcagtaa acaacttcca agaagtaatg aaatgtgatg ccgccaaatt
    10921 caaccgtttc ttccacttaa tgctggaaca aggcgtgtat ttagccccat cggcattcga
    10981 ggcagggttt atgtctttag ctcacagtga tgaagatatt gctcgtacgc tagaggctgc
    11041 ggataaggca tttgctcagc tttagaagaa tgacaagcgg ttgggtttac tcaataattt
    11101 gcaagttttt gagggaattt gaccgcttgt agtgcaaatt tctcttacga tagcaattat
    11161 gatggtgttc gtctctgacg agtgcttata caaactttca ttatgcttaa acaagcaccc
    11221 gtctggagac gggcgctatc gagggaatag gattgataaa gcaatatatg ggcttccaac
    11281 acttgcaggc aaggacaagt cttacacttt ctaatattac aaatatattt ctttctttaa
    11341 tctataccat aaaggtttaa gttggttctt tataactttg gaatccatag atgaataagc
    11401 tctctttcca taagagataa aattagattt tccgaaatga gaatacttag aaaatagctt
    11461 tcttttataa atgcctttga tagctacccc tcgtcttatt cttatcctat tatatttacc
    11521 ctgagtttgc ttagctagac taacccctcg tttcatttta tttgaatatc gtgtaaatgc
    11581 cgatgatcta atactaatag a
//
LOCUS       DANLZD010000086        11585 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.086, whole genome shotgun sequence.
ACCESSION   DANLZD010000086 DANLZD010000000
VERSION     DANLZD010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11585
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.086"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            108..2000
                     /gene="mnmG"
                     /locus_tag="PXE26_001661"
     CDS             108..2000
                     /gene="mnmG"
                     /locus_tag="PXE26_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HDL5594229.1"
                     /translation="MIYNQIYDVIVVGGGHAGTEAALAPARMGLKTLILTHNVDTLGQ
                     MSCNPAIGGIGKGHLVKEIDAMGGLMAKATDVAGIQFRTLNNSKGPAVRATRAQADRV
                     LYRNAVRTALENQPNLDIFQQEVVDILVENNRAVGAVTKMGLTFKARAVVLTAGTFLA
                     GKIHIGLDNYAGGRAGDPAATMLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQ
                     HGDEVLPVFSFMGDVSQHPRQIPCYITHTNDQTHDLIRNSLDRSPMYTGIIEGVGPRY
                     CPSIEDKVMRFADRNSHQIYLEPEGLNTIEVYPNGISTSLPFDVQMGIVNSMKGLENT
                     RIIKPGYAIEYDYFDPRDLKPTLETKAIDGLFFAGQINGTTGYEEAGAQGLLAGINAA
                     LQVQGKEAWYPTRDQAYTGVLVDDLCTLGTKEPYRVFTSRAEYRLLLREDNADIRLTP
                     KAHELGLIDEARWVRFNQKMEAIEQERARLKSTWAHLQMPNLDELNALLANPLAREAS
                     GEDLIRRPEMSYEKLTQIALFAPAIEDKQVAEQVEIAIKYQGYIEHQYNEIERHKRHE
                     NTLIPVEFDYDKVESLSNEVRAKLMQHRPVSIGQASRISGITPAAISILLVNLKKQGM
                     LKRGEL"
     gene            2095..2319
                     /locus_tag="PXE26_001662"
     CDS             2095..2319
                     /locus_tag="PXE26_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594230.1"
                     /translation="MIYLRKLGFSPFDHQMFAQPSWYFCNALVHTNYENLRQGVFVTK
                     AYLVMFLENLLFEKSHSLSNRALRINENND"
     gene            2332..2946
                     /gene="rsmG"
                     /locus_tag="PXE26_001663"
     CDS             2332..2946
                     /gene="rsmG"
                     /locus_tag="PXE26_001663"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HDL5594231.1"
                     /translation="MLAKLNRLLAQAEINLTDQQKEQLVGFVRLLDKWNKAYNLTSVR
                     NPDEMLVKHILDSLVVSRHLQGETFIDVGTGPGLPGIPLAIANPDKQFVLLDSLGKRI
                     TFIKNALRELGIKNVTPVQSRVEEYTESQFDGVLSRAFASLNDMIDWCYHLPTENGKF
                     YALKGVYDEQEIIEIKQPIQLVEVIKLEVPELVGERHLVVLKKP"
     gene            3214..4662
                     /locus_tag="PXE26_001664"
     CDS             3214..4662
                     /locus_tag="PXE26_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5594232.1"
                     /translation="MNRVTNKADEFAKLSTFERIAYGSGDLAQNLVFGTVGGFLLTYL
                     TTVNGISAVAGATIFLIVKWGNVFWDPFVGAFIDKSKPSAQGKYRPYLLKFGIPLVVL
                     ASLLFLPLESVRGSVIYAFLSYFATAMVYSFVNIPYGSLSASLTRDTDEIAKLTTTRM
                     TMANIANLFVYTLFPLFVQLLAPHAELKNTGFFGIELYLGDYMSAAAGPAWFKVYAVY
                     MVIGFVALMLSYFGTKERIIPTAEETDKVKYSDLVNELKRNRPLQILGLFFLIGFTFM
                     FFGNTVWPFYLKYNIGHSEWIASVGLLGSIPGIFLVFLWPKLRRTIGKKNFFYLFLGI
                     FVLGQLCLWVWQFDSFKYSPTLGYIGRFLQQWGLTSATGFMWALVPEVVTFGEFKSKK
                     RVAGIINALMGLFFKIGLALGGIIPGYINAVYGFNGSLLAQTEEALFGINLSMIWAPI
                     ILAIIAGFVMSRYPLSDTDIDHINEKITAYSK"
     gene            4685..5731
                     /locus_tag="PXE26_001665"
     CDS             4685..5731
                     /locus_tag="PXE26_001665"
                     /inference="COORDINATES: protein motif:HMM:NF016497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HDL5594233.1"
                     /translation="MQIQNPVLPGFNPDPSIVRVGDTYYIATSTFEWFPGVRIHESKD
                     LVHWNLVKNVLDTTTLLDMRGNPSSGGIWAPDLSYAEGKFWLVYTDVKITDGAFKDMT
                     NYLTTAKEIQGPWSAPIKLNGIGFDASLFHDDDGRKYLVQQTWDHREYHHPFDGITLT
                     EFDVATMKLKPETQRTIFEGTEVKLVEGPHIYKINGEYYLFAAEGGTVFTHQEVVARS
                     KTLEAHSFQLAPNTPFITNFDTPNSYLQKQGHGSLVDTPSGEWYYASLTARPWNHATE
                     SATDPRGWSTLGREAAIQKVEFDQDGWPYIVGGHGGKTFVEAPKDAIFTEAPIDHSQH
                     DEFDSSTLDINWNT"
     gene            5734..6372
                     /locus_tag="PXE26_001666"
     CDS             5734..6372
                     /locus_tag="PXE26_001666"
                     /inference="COORDINATES: protein motif:HMM:NF036826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,4-xylosidase"
                     /protein_id="HDL5594234.1"
                     /translation="MPFSKEMGEVGNGVLKLIGRGSLANTHDLSLIARRWQAFYFDAE
                     TKVKFTPFSYQSMAGLTNYYNHSHWSWIFITKNDQGQQVIEVAENKGGLRNGQYTSYL
                     KDKAIVIPDGTEYVWFKTKVRKETYRYEYSFDGKQWHTIPVELDAAVLSDDYVLRSYG
                     GFFTGAFVGLAAVDYSSYESTAEFSYFDYKELGDKQLTDGSFSWEKSESCFG"
     gene            6391..7371
                     /locus_tag="PXE26_001667"
     CDS             6391..7371
                     /locus_tag="PXE26_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDL5594235.1"
                     /translation="MKQRRFGKTNKMVSEIGLGTWQLGTKWGEPFNHQEAMAILETAY
                     EQGINFIDTADVYNNGQSEKAIGDILKKYPDFFYVVTKCGRALNPHTAEMYTPQAIEK
                     FVDGSLSHLGTEKLDMILLHCPPTLVYRNDEIFTKLEQLKAGGKLIDYGVSIETAEEG
                     LLAMEYDIAAMEVIFNMFRLKPLEQLFPTAQQKNVGIIARVLLASGLLTGRYNACTQF
                     GKDDHRTFNRNGEAFDKGETFSGVDYQLGLQAVEELKALFGTEDLIPYALRWVLMNEA
                     VSTVIPGASKVSQVITNAAVDNFPPLTENEMQKVEDIYNRLIRPSVHHLW"
     gene            complement(7433..8773)
                     /locus_tag="PXE26_001668"
     CDS             complement(7433..8773)
                     /locus_tag="PXE26_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5594236.1"
                     /translation="MFSFLKASPPAEQKVEASRVDAEYRKLRWQVFAGVFIGYAAYYL
                     IRKNFSLAMPYLIDEYGFTKADLGTVGVALSLAYGFSKFIMGNVSDRSNPKYFITIGL
                     LGSAIVSLVFGLVPGVLSSIPIMIILAALNGWFQGMGYPPGAKTMTNWFSTSERGVWW
                     SWWNVSHNLGGGLIGPLAILGLSIFGVWQSLFYLPALIAIVLAFVMFYLMRDTPESQG
                     LPPIDEYKGEKVVEKVESAHTLSSKDIFYKYILNNKFLWAIAIANVFVYFIRYGIIDW
                     APTYLKEVKHFSVDKQSWAYFLYEYAGIFGMLASGYLSDKVFKGHRAPPMLLFLAGVL
                     IAIVVYWKNPAGNPLIDNICLVAIGFLIYGPVMMIGLQAADLVPRVATGTATGLTGLF
                     GYLLGSASAGYVMGKLVDMFGWDGGFYALILSCFLAFAFIALTLFKKTSKQLEV"
     gene            complement(8963..10036)
                     /gene="glpQ"
                     /locus_tag="PXE26_001669"
     CDS             complement(8963..10036)
                     /gene="glpQ"
                     /locus_tag="PXE26_001669"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HDL5594237.1"
                     /translation="MKFKFKTLVAALALSATALGAYAQQSDKLVIAHRGASGYLPEHT
                     LESKALAFGQQADYLEQDLAMTKDNRLIVIHDHFLDGLTDVAKKFPERKRADGRYYVV
                     DFTLDEIKTLEMTENFEVKDGKQAQVYPNRFPMWQSHFTIHTLEEELEFIQGLEKSTG
                     KKIGIYPEIKAPWLHHKEGKDIALETLKVLKKYGYDSKTSPIYLQTFDFNELKRIKTE
                     LLPKLGMDVKLVQLVAYTDWHETEEKDKNGNWVNYDYDWMFKDGAMAEVAKYADGVGP
                     GWYMLVDKEKSKVGNIVYTPLVKELAKYKMELHPYTVRKDALPDFFQNVDEMYDALLN
                     KAGATGVFTDFPDTGVEFLKKQK"
     gene            complement(10106..11551)
                     /gene="glpT"
                     /locus_tag="PXE26_001670"
     CDS             complement(10106..11551)
                     /gene="glpT"
                     /locus_tag="PXE26_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter"
                     /protein_id="HDL5594238.1"
                     /translation="MFGPFKPAPHIAELPADKVDARYKFLRWQVFAGIFFGYAAYYFV
                     RANFDLAQKGLIEAGMYTKTDLGVIGTAAGLAYGLSKFVMAGMSDRSNPKVFLPTGLL
                     LSGLCMTLMGLMPWATSSILVMWVMIFLNGWFQGMGWPPCGRTMVHWWSKSERGTIVS
                     IWNTAHNLGGMVPGAMVLLASALYFSEYGVEATAKDVWQQALYFPGIAAMIAAIPIYL
                     VMKDTPQSCGLPPVEKWRNDYPDDYNEKTYEHDLSTKEIFVTYVLKNKLLWYIAIANV
                     FVYLIRYGVLKWSPVYLGEVKHFNIKGTAWAYTIYELAAIPGTLLCGWVSDKLFKGKR
                     GLTGFIFMILTTAAVVAFWLNPATPESEIAQYAGHAWYENPYQLMDFIWMTTIGFLIY
                     GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGTVAASAVVGWAADKFGWDGGFYVM
                     IGGGVLAILLTFIVMVEEGKHKAKLEDHYGK"
BASE COUNT         3328 a         2447 c         2491 g         3319 t
ORIGIN      
        1 cgcatttaga tcttaacctc tctaaaaatc tatttcccag atgatccctt tttacgctaa
       61 aatatgcgtt catttttcag cagaatttgt aagatagtag aagagatatg atttacaacc
      121 aaatttacga tgtgatcgtg gtcggcggtg gtcacgccgg cacagaagcg gccctagcac
      181 cggcacgaat gggcttaaaa accctgattt taacccacaa tgttgatacc ttagggcaaa
      241 tgtcgtgcaa cccggctatc ggagggatcg gcaaaggcca tctggttaaa gagatcgatg
      301 cgatgggcgg tttaatggca aaagcaacag acgttgccgg gatccaattc cgtaccctaa
      361 acaactcaaa agggcctgcg gtgcgtgcca cccgtgccca agctgaccgt gtgctttacc
      421 gtaatgcggt acgcactgcg ttagaaaatc aaccaaattt agatattttc cagcaagaag
      481 tagtggatat tttggtggaa aacaaccgtg cagtgggtgc agttaccaaa atgggcttaa
      541 cgtttaaagc ccgtgcggta gttttaaccg ctggtacgtt cttagcgggt aagatccaca
      601 ttgggttgga taactatgca ggtggtcgtg ccggcgatcc tgctgcaaca atgttggcag
      661 atcgtctgcg tgatctgaat ttgcgtgttg atcgccttaa aacaggtaca ccacctcgcc
      721 tcgatgcccg taccatcaac tttgacgtac ttgccaaaca gcacggcgat gaggtgttac
      781 ctgtcttctc ttttatgggc gatgtctcac agcacccacg ccaaattccg tgctacatca
      841 cccacactaa cgatcaaacc cacgatttaa ttcgcaacag tcttgatcgc agcccgatgt
      901 acaccggtat tatcgaaggg gttggtccac gttactgccc gtctattgaa gataaagtaa
      961 tgcgttttgc cgatcgtaat agccaccaga tctaccttga accggaaggc ttaaatacga
     1021 ttgaggttta cccgaacggg atctccacca gcttgccgtt tgatgtgcaa atggggatcg
     1081 tcaactcaat gaaaggcttg gaaaacaccc gcatcatcaa accgggctat gcgattgagt
     1141 acgactactt cgacccgcgt gatttaaaac caacccttga aaccaaagcg attgacggtt
     1201 tattctttgc cggacaaatt aacggcacga ccggttacga agaggcaggt gcgcaaggtt
     1261 tgctggcagg gattaacgca gcgttacagg ttcaaggtaa agaggcgtgg tatccaaccc
     1321 gtgatcaagc ctacaccggc gtgttggtgg acgacctctg tacattaggc accaaagagc
     1381 cataccgtgt gtttacctct cgtgccgaat accgtctgtt gctgcgtgaa gacaatgcgg
     1441 acattcgttt aacaccaaaa gcccacgaac taggattaat tgacgaggca cgttgggtgc
     1501 gtttcaacca aaaaatggaa gcgattgagc aagaaagagc tcgtttgaaa tccacttggg
     1561 cacatttgca aatgccaaat ctggacgaat tgaacgcgtt attggctaat cctttagccc
     1621 gtgaagcaag cggtgaagac ttaatccgcc gtcctgaaat gagttacgaa aagctgaccc
     1681 aaatcgccct atttgcccct gctattgaag acaagcaagt ggcagaacag gtggaaattg
     1741 cgatcaaata tcagggctat attgagcatc aatacaacga aatcgaacgc cataaacgcc
     1801 acgaaaacac cctgattccg gtagagtttg actacgacaa agtcgaaagc ctctccaacg
     1861 aagtgcgagc taaattgatg caacaccgcc ctgtctctat cgggcaggca agccgcattt
     1921 ccggcatcac accggcagcg atttccattc tgttggtgaa tttgaagaag caaggaatgt
     1981 tgaaacgggg tgagctgtaa atactacaag cggttggttt tgcagaaatt tttgcaaaat
     2041 tgaccgcttg tattctttgg agaaggaaat acccgaacta ccgccgtatt tttaatgata
     2101 tatctgcgta aactcggttt ttcgccgttc gatcaccaaa tgtttgccca accttcgtgg
     2161 tatttctgca atgcacttgt tcataccaat tatgaaaatc tgcgacaagg tgtatttgtg
     2221 actaaagcgt atttagtgat gtttcttgaa aatttattgt ttgaaaaaag tcattcgtta
     2281 agtaatcggg cattgcgtat taatgaaaat aatgattaag gaatttgcaa aatgttagct
     2341 aaattaaacc gcttgcttgc tcaagccgaa ataaatttga ccgatcaaca aaaagagcag
     2401 ttagttggtt ttgtgagatt attggataaa tggaataagg cgtataacct cacttccgtt
     2461 cgcaaccctg atgaaatgtt ggttaaacat attttggaca gccttgttgt tagtcgtcat
     2521 ttacaaggcg aaacgtttat tgatgtcggc acggggccgg ggctaccggg cattccgctg
     2581 gcgattgcta accctgataa acagttcgtg ctactagaca gcttaggcaa acgcatcact
     2641 tttatcaaaa atgcgttgcg tgagcttggt attaaaaacg ttaccccagt gcaaagtcga
     2701 gtggaggaat acactgaaag ccagtttgac ggcgtattaa gccgagcctt tgcctcgctt
     2761 aatgatatga tcgactggtg ttatcattta ccgactgaaa acggtaaatt ttatgcatta
     2821 aaaggcgtgt atgatgagca ggaaataatt gaaatcaaac aaccgattca gctagtggaa
     2881 gtgattaagc ttgaagtacc tgagttggta ggagaacggc atttagtagt gttgaaaaag
     2941 ccctaataca ttggaagttt aatgatacaa gcggtcgaat ttgtaaattt ttttgcaaat
     3001 ctgcctgctt gtgttaacta tttttcataa agcatacctg gttaataagg tgtgcttttt
     3061 ttataaccta ttatttcatc tgatttattt ctattttgtg atgtgcttca caaaaacaaa
     3121 aaaacataat gtagtaaaaa atattcgtaa ttgaagccct tatttcttta cctgaaaata
     3181 agcgaactta attatataac gaggaggttc gtaatgaaca gggtaacaaa taaggcagat
     3241 gagtttgcta aactcagtac gtttgaacgt attgcttatg gtagtggcga cttagcccaa
     3301 aatttagttt ttggtacagt tggtggtttc ttactcactt acttaactac tgtaaacggc
     3361 atttctgccg tagcaggagc aacgattttc ttaattgtaa aatggggaaa tgtgttttgg
     3421 gatccgtttg tcggtgcctt tattgacaaa agcaagccct cagcacaggg taaataccgc
     3481 ccgtatttac tgaaatttgg gattcctctt gtggttttag cttcactact atttcttcct
     3541 cttgaatcag tacgtggctc agtgatttat gctttccttt cttattttgc cactgcgatg
     3601 gtttattctt ttgttaatat tccttatggc tcgctttctg cttctcttac tcgagacaca
     3661 gacgaaattg ctaaattaac cacaacccgt atgacaatgg caaatatcgc taatttgttt
     3721 gtttatacct tattcccact ttttgtgcag ttacttgcac cacatgccga attaaaaaac
     3781 accggctttt tcggtattga gctctattta ggtgattata tgtctgctgc tgcaggccct
     3841 gcttggttta aggtttatgc ggtctatatg gtaattggat ttgtggcgtt aatgctctct
     3901 tattttggta ctaaagagcg gattattcca acagcggaag aaacagataa agtcaagtat
     3961 tcagatttag ttaatgaact caaacgcaat cgtccattac agattttagg gttattcttc
     4021 ttaataggtt ttacttttat gttcttcgga aatacggtgt ggccttttta cctaaaatat
     4081 aatattgggc attctgagtg gattgcctcc gtcggtttat taggctctat ccctgggatt
     4141 ttccttgtat tcttatggcc gaaactacgt cgcactatcg gtaaaaagaa ctttttctat
     4201 ctatttttag ggattttcgt tctagggcaa ctttgtctat gggtatggca atttgactcc
     4261 ttcaaatact ctccaacctt aggctatatc ggtcgtttct tacaacaatg gggattaact
     4321 tctgctaccg gttttatgtg ggcgttagtg cctgaggttg ttacctttgg agagtttaag
     4381 tcgaaaaaac gtgtagcagg tattattaat gcgttaatgg gcttgttctt taaaatcggc
     4441 ttggcgttag gcggtattat tccgggttat attaatgcgg tttatggttt taacggctcg
     4501 cttttggctc aaaccgaaga ggctttattt ggtatcaatc tttcaatgat ttgggctcca
     4561 attattttag cgattattgc aggatttgtg atgagtcgct atccgttaag cgatactgat
     4621 attgatcata tcaacgaaaa aattactgct tattccaaat aatttgagta taggagaata
     4681 gattatgcaa attcaaaatc cagttttacc cggtttcaat ccagatccat ctattgtgcg
     4741 tgtgggtgat acttactaca ttgcaacttc tacttttgaa tggtttccgg gagtgagaat
     4801 tcacgaatcg aaagatttag tgcattggaa tttagttaaa aatgtcttag atacaaccac
     4861 gttgttagat atgcgaggca atccctcttc aggtggtatc tgggctcctg atctttctta
     4921 tgcggaaggt aaattttggt tggtttatac cgatgtaaaa attacagacg gtgcattcaa
     4981 agatatgact aactatctaa ctactgccaa agaaattcaa ggtccttggt cagctccgat
     5041 taaattgaat ggtattgggt ttgatgcttc gttgtttcac gatgatgatg ggcgaaaata
     5101 tttagtgcaa cagacttggg atcaccgtga atatcatcac ccctttgacg gtattacgtt
     5161 aacggaattt gatgttgcca caatgaaact caaacctgaa acccagcgta cgatttttga
     5221 aggtacagaa gtgaaattgg tggaaggtcc acatatttat aaaattaatg gcgaatatta
     5281 tctgtttgcg gcggaaggcg gcacagtatt tacgcatcaa gaagtagtgg ctcgttctaa
     5341 aacattggag gctcactctt tccaactggc tccaaataca ccgtttatta ctaattttga
     5401 tacacctaat tcttacctac aaaaacaagg gcacggttca ttagttgata ccccaagtgg
     5461 tgaatggtat tacgcttccc tcacagcaag accttggaat catgcaacag aatccgcaac
     5521 cgatcctcgt ggttggtcaa cattagggcg tgaagccgcc attcaaaaag tagaatttga
     5581 tcaagacggc tggccttata ttgtgggtgg acacggtgga aaaacctttg tagaagcccc
     5641 aaaagatgca atttttaccg aagctcctat tgatcattct caacacgatg agtttgatag
     5701 ctcaacgtta gatattaact ggaacactta agagtgcctt ttagtaaaga gatgggcgaa
     5761 gttggtaatg gtgttttaaa attgattggg cgaggctctc ttgcaaatac acacgattta
     5821 tcgctaatcg cacgccgttg gcaagccttc tattttgatg cggaaaccaa agtgaaattt
     5881 acaccgtttt cttatcaatc tatggcaggt ttaactaact attacaatca ctcacactgg
     5941 tcttggattt tcatcaccaa aaatgatcaa ggacaacagg tgattgaagt tgcagaaaat
     6001 aaaggtggac tcagaaatgg gcaatatact tcttacctta aagataaagc aattgtcatt
     6061 cctgatggaa cggagtatgt ttggtttaag actaaagttc ggaaagaaac ttaccgttat
     6121 gaatattcat tcgatggcaa acaatggcac actattccgg ttgaattaga tgcggcagtg
     6181 ctttcagatg attatgtgtt acgcagttat ggcggtttct tcacaggagc ttttgtcggg
     6241 ctggctgcag tggattactc cagttatgaa tctacagcag aatttagcta ctttgactat
     6301 aaagagttag gcgataagca acttacagac ggctcattct cttgggaaaa atctgaaagt
     6361 tgctttggct aaaatgagga gaatatcaca atgaaacaac gcagatttgg taaaaccaac
     6421 aaaatggtgt cagaaattgg gttaggcact tggcagcttg ggacgaaatg gggtgaaccg
     6481 ttcaatcatc aagaggcgat ggcaatttta gaaaccgctt atgagcaagg catcaatttt
     6541 attgataccg ctgatgtgta taacaacggg caaagcgaga aagccattgg tgatattttg
     6601 aaaaaatacc ctgacttttt ctatgtcgtt accaaatgtg gacgtgcgtt aaacccgcat
     6661 actgctgaaa tgtacacgcc acaggcaatc gaaaaatttg ttgatggtag tttaagccat
     6721 cttggcacgg aaaagttgga tatgattttg ctccactgcc cgccaacgtt ggtttatcgc
     6781 aatgatgaga tttttacgaa attggaacag cttaaagccg gcggaaaatt aatagactac
     6841 ggtgtgagta tcgaaacggc agaggaaggc ttgttggcaa tggagtatga cattgcggca
     6901 atggaagtta tcttcaatat gttccgctta aaaccattgg agcaactctt cccaaccgct
     6961 cagcaaaaaa atgtgggtat tatcgcccgt gtactgttgg caagtggttt gcttacaggc
     7021 agatataatg cctgcaccca atttggcaaa gacgaccacc gcacatttaa ccgcaatggt
     7081 gaagccttcg ataaaggcga aaccttttcg ggtgtggatt atcaactcgg tttacaagcg
     7141 gtggaagaat tgaaagccct attcggcacg gaagatttaa ttccttacgc cctacgttgg
     7201 gtattgatga atgaagctgt gagtacagta atcccgggag caagtaaggt ttcacaagta
     7261 attactaacg cagcggtgga taatttccct ccactcactg aaaatgaaat gcaaaaagtg
     7321 gaagatattt acaaccgctt aattcgccca agtgtgcatc atttgtggta atttatccaa
     7381 cgctataaaa aatggaactc taacttgagt tccatttttg tcaattttag ccttaaacct
     7441 ctaactgttt agaggttttc ttaaacagag tcaatgcaat aaacgcaaag gctaagaaac
     7501 aggaaaggat cagggcatag aaaccaccgt cccagccgaa catatcaacc agtttaccca
     7561 tcacataacc tgcacttgca gagcctaaca agtagccgaa taaaccggtt aaacctgttg
     7621 ctgtaccggt ggcaacacga ggcactaaat ccgctgcttg taaaccgatc atcatcaccg
     7681 gcccgtagat taagaaacca atcgccacta agcagatgtt gtcgattaac gggttgccgg
     7741 ctgggttttt ccagtacacc acaatcgcaa ttaacacacc agcaaggaat aacaacatcg
     7801 gcggcgcacg gtgacctttg aatactttgt cgcttaaata accgcttgca agcataccga
     7861 agataccggc atattcatac aagaagtacg cccagctctg tttatccaca gagaaatgtt
     7921 tcacttcttt taagtaagtc ggtgcccagt cgataatgcc gtagcgaatg aaatagacaa
     7981 acacgttggc aatcgcaatt gcccacagga atttgttgtt taaaatatat ttgtagaaaa
     8041 tgtctttgga agagagtgtg tgggcagact ccactttttc caccactttc tcgcctttgt
     8101 actcatcaat cggcggtaag ccttgagatt ccggcgtatc acgcatcaaa tagaacatca
     8161 caaacgccag tacaatcgca atcaacgccg gcagatagaa cagggattgc cacacgccaa
     8221 aaatagataa gcctaaaatc gccaacggcc cgattaaacc gccgcccaag ttgtgcgaca
     8281 cgttccacca gctccaccac acgccacgtt cagaggttga gaaccagttg gtcatcgttt
     8341 tcgcccccgg cggatagccc attccttgga accagccgtt taacgccgcc aaaatgatca
     8401 taattggaat agacgaaagc acgcccggta ctaaaccgaa caccagactc acaatcgctg
     8461 aaccgagcaa gccgatagtg ataaagtatt tcgggttaga acggtcggaa acgttaccca
     8521 taataaattt actgaagccg taagcgagtg ataatgccac gcccaccgta cctaagtctg
     8581 ctttggtgaa gccatattca tcaatcaaat acggcattgc caacgagaag tttttacgaa
     8641 ttaaataata tgccgcatag ccgataaaga cgcctgcaaa cacttgccaa cgtaatttgc
     8701 gatattccgc atcaactctg ctggcttcca ctttttgttc tgctggtgga gaggctttta
     8761 gaaaggaaaa cattttacta ctcctttaag aatgaaatcc tatggctact ataatctttc
     8821 atttggagca gaaaaagtgg atttttgaaa atttgtgagc aagattaaaa ttattttgag
     8881 cgaaaacgaa aagcggttga atttccttct ttttttgcaa aaaatttgag aaatctaacc
     8941 gcttgtttca cttaaaaatc agctatttct gctttttcaa aaattccacg cccgtatcag
     9001 ggaagtcagt aaagacgcct gttgcacccg ctttattcag cagggcatcg tacatttcat
     9061 cgacattttg gaaaaagtcc ggcagagcat ctttgcgcac ggtgtatggg tgaagttcca
     9121 ttttgtactt cgccaactct ttcactaatg gcgtgtaaac aatgttgccg actttagatt
     9181 tttctttatc caccaacata taccagcccg ggccgacacc atcggcatat tttgccactt
     9241 ctgccatcgc accgtctttg aacatccagt cgtagtcgta attaacccag ttgccgtttt
     9301 tatctttctc ttcggtttcg tgccaatcgg tgtaggcaac taactgcacc aattttacgt
     9361 ccatacccag tttcggtagt aattcggttt tgatccgttt cagctcgttg aaatcgaagg
     9421 tttgcaggta aattggtgag gttttgctgt cgtagccata ttttttcaac actttcaggg
     9481 tttcgagtgc aatgtcttta ccctctttat ggtgcaacca aggggcttta atttcaggat
     9541 agatcccaat ttttttgccg gttgatttct ctaatccttg aataaattcc agctcttctt
     9601 ccaaagtgtg aatggtgaaa tgggactgcc acatcgggaa gcggttcggg taaacttgtg
     9661 cctgcttgcc gtctttcacc tcaaaattct cggtcatttc aagggtttta atctcatcaa
     9721 gggtgaaatc caccacataa taacgaccgt ctgctcgttt acgctcaggg aattttttcg
     9781 ccacatcagt taaaccgtct aaaaagtggt cgtgaatcac aatcaggcgg ttatctttgg
     9841 tcatagcaag atcttgctct aaatagtccg cttgttgccc gaatgctaga gctttagatt
     9901 caagcgtatg ctcaggtaaa taaccgcttg caccacggtg ggcaatcact aatttatcag
     9961 attgttgtgc ataggcaccc aatgctgtcg cggacaatgc taatgcagca accaatgttt
    10021 tgaatttaaa tttcatagaa ttacctcata taatgtaaaa ataaaaggaa gaacaaaaat
    10081 gtccttcctt ttgataagtt atttattatt taccatagtg atcttctaat tttgctttgt
    10141 gcttgccttc ttcaaccatc acaatgaagg ttaagagaat ggctaataca ccaccaccga
    10201 tcatcacgta gaaaccgccg tcccagccaa atttatctgc tgcccagcca actactgcag
    10261 aggctgccac tgtaccacct aagtaaccga ataaaccggt gaaacctgct gctgtacctg
    10321 ctgctttttt cggtgcaagt tcaagggcgt gtaagccaat caacattacc gggccgtaga
    10381 ttaagaaacc gatagtggtc atccaaatga agtccattaa ttgatatggg ttttcatacc
    10441 aagcatggcc tgcatattgt gcaatttcag attccggtgt cgcagggttg agccagaacg
    10501 caaccactgc tgcggtggta agaatcataa agatgaaacc ggttaaacca cgtttgcctt
    10561 tgaacagttt gtcagagacc caaccacaga gtaatgtacc tggaatcgca gctaattcat
    10621 aaatggtata tgcccatgct gtacctttaa tgttgaagtg ttttacttcg cctaagtaca
    10681 ccggcgacca tttcaatacg ccatagcgga ttaagtaaac gaagacattc gcaatggcaa
    10741 tgtaccataa cagtttgttt ttcagcacat aagtcacgaa aatctctttg gtgcttaaat
    10801 cgtgttcata ggttttttcg ttatagtcgt cagggtagtc gttacgccat ttttcaactg
    10861 gcggtaaacc gcaagattgt ggagtatctt tcatcacaag gtagattgga atagctgcga
    10921 tcattgctgc aattcccggg aaataaaggg cttgttgcca tacatctttt gccgttgctt
    10981 ctacaccata ctcactgaaa tagagcgcac ttgctaatag caccatcgcc cccggcacca
    11041 taccgcctaa gttgtgagcg gtattccaga tagaaacgat agtaccacgc tcagatttag
    11101 accaccagtg aaccattgtt cgtccacacg gtggccaacc cataccttga aaccagccgt
    11161 ttaagaagat cattacccac attactaaaa tgcttgatgt tgcccaaggc attaagccca
    11221 taagggtcat acatagacct gaaagtaaca atccggtcgg taaaaatact ttcgggttag
    11281 agcggtcgga cattcctgcc atcacgaatt ttgataaacc gtaggccagg ccggcagctg
    11341 taccaatcac accgagatcg gtttttgtat acataccagc ttcaatcaag cctttttgtg
    11401 ctaagtcgaa gtttgcacgc acaaaatagt aagcggcata gccgaagaaa attcctgcaa
    11461 acacttgcca acgcaagaat ttatatcttg catcgacttt gtccgccggt aattccgcaa
    11521 tgtgcggagc gggtttaaat ggaccaaaca tagtattctc caatattact tagtaaaacc
    11581 tctga
//
LOCUS       DANLZD010000087        11577 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.087, whole genome shotgun sequence.
ACCESSION   DANLZD010000087 DANLZD010000000
VERSION     DANLZD010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11577)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11577)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11577
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.087"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..4458)
                     /gene="mukB"
                     /locus_tag="PXE26_001671"
     CDS             complement(<1..4458)
                     /gene="mukB"
                     /locus_tag="PXE26_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukB"
                     /protein_id="HDL5594239.1"
                     /translation="MIDTTELQNNPQIAPLARPNDVQRGKFLSLTLINWNGFFARTFD
                     LDDLVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTAGSRDKGLYGKLK
                     AGVCYAVLESFNSRGQRIITGVRLQQIVGRDKKVDIRSFSLQNIPQEQSIISLLTEQV
                     GNKARVLALNELKDQFENSEVQFKQYHSITDYHSFMFDLGVIPKRLRSAADRSKFYKL
                     IEASLYGGISSVITKSLRDYLLPENTGVRQAFQDMESALRENRMTLEAIKVTQSDRDM
                     FKRLITESTNYVSADYMRNANERRGNVQQALEQRKEWYAAKSKILLEQQRFVEFSRES
                     ADIAEAELALEADYNSANDHLNLVMNALRHQEKIERYQDEVEELNIKLEEQQEALEEI
                     AEIAENAQARADEADDHVEELRSQMADYQQALDAQQTRALQYQQAVNALEKAKQLTGL
                     VNLDLNNIEDYHAEFVAQAEDLTDQVFELEQRLSVSDMAKTQFEKAFELVCKISGEID
                     RLQAWEEARALLSAFPEQKMQAQQAVSLRQKLNDLEQRLQQQQNAQRLVAEFNQKSQQ
                     QLNSAEELDAYFEEQQARLEDLEAELSDFVEQRSTQRQQREQLNQQYQQLAKNAPAWH
                     TAQSALTRLEEQCGEKFEASQSVMQFMQNMLSKEREATLARDELARKEQMLDEQINRL
                     SQPDGSEDARLNQLAERFGGVLLSELYDDVSIEDAPYFSALYGEARHAIVVRDLEAVK
                     TQLEKLDDCPSDLYLIEGDPSAFDDAVFSAEELGEGVVVKVSDRQWRYSKFPEVPLFG
                     RAAREKHLATLKAERDETAEKHAERAFDVQKCQRLHQHLSQFIGTHLNLAFQENPEML
                     MQEIAAERAEIERELAQSAGNEQQLRHQLESVKAQLQMLNKILPLANLLADETLEARA
                     EECREQLELAEEDEMFIRQFGATLSQLEPIAAALKSDPALFEQLEADYRRSVAEQKVL
                     QQKVFSLADVMNRRLHFSYQETVGTEGSALTEQLRQRLENAQREREQARDQLRQAQAQ
                     LSQYNQVLTGLRSSYEAKNQMLQELIREIDDLGVRGDSGAEERARFRRDELQQRLSQQ
                     RSRKGYLDKQIAVIEAEMDNLNRTLRKAERDYHTQRELVVQAKASWCIVQRLSRNSDV
                     EKRLNRRELAYQSAEELRSISDKALGALRTAVADNEYLRDSLRASEDSRKPENKVAFF
                     IAVYQHLRERIRQDIIKTDDPIDAIEQMEIELSRLTNELTGREKKLAISAESVANILR
                     KTIQREQQRILQLNQGLQNIAFGQVKGVRLVVNIRDTHAILLNALSNNREEHKDLFDS
                     QKLSFSEALAMLYKRVNPHIEMGQRTPQTIGEELLDYRNYLDLEVETFRGADGWMRAE
                     SSALSTGEAIGTGMSILLMVVQSWEEEARRMRAKDILPARLLFLDEAARLDATSINTL
                     FELCERLDMQLLIAAPENISPERGTTYKLVRKITNNQEYVHVVGLKGFAK"
     gene            complement(4634..5350)
                     /gene="mukE"
                     /locus_tag="PXE26_001672"
     CDS             complement(4634..5350)
                     /gene="mukE"
                     /locus_tag="PXE26_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukE"
                     /protein_id="HDL5594240.1"
                     /translation="MTENIQDFISPKLALAIANPIFPELDSQLRAGRHINTEQLDQHV
                     FLMDFQAELESFYRRYHVELIRAPEGFFYLRPKASTLIARSAMSEMEMLVGKVLCYLY
                     LSPERLAQQGIFSQDDVYEELLSLADESKLLKAVNPRSTGSDLDRAKLAEKAGGALRR
                     LARIGIITRVGEQNSKKFVISESVFRFGADVRTGDDPREAQLRLIRDGEATTPALLNE
                     QAVEIDENIADEAPFDGENE"
     gene            complement(5399..6742)
                     /gene="mukF"
                     /locus_tag="PXE26_001673"
     CDS             complement(5399..6742)
                     /gene="mukF"
                     /locus_tag="PXE26_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukF"
                     /protein_id="HDL5594241.1"
                     /translation="MQNELAQTIPELISWTKDREFSLSLSSDRLAFLLAISIYNQEQT
                     DGELLESDLIDLFRYVSNSFEQSDATFTQRANNAINDLVRQRLLNRFSSEFTEGLAIY
                     RVTPLGVGISNYYVRQREFSTLRLSIQLSIVADEIQRASVAAEEGIEQAQDERFWRNN
                     VFAPLKYSVAEIFDSIDLSQRIMDENQHQIRERIAELLSQNWHEAIMSCEQLLDETSG
                     NLRELQDTLNAAGDKLQAQLLRIQSCLMARNDLDFIDQLIVNLQNKLDRIISWGQQAI
                     DLWIGYDRHVHKFIRTAIDMDKNRVFGQRLRQSIQDYYNSPWLLYTAKADSLLDLRDD
                     EAMLNEAESVGELPSELEYESLSDVQEQIVSAMQAHLAPFRAEGKPIDLGVILREQLA
                     RFPESRHFDVARIIVDQAVKLGMASQDSQAVYPQWQPINEQGAEVQANVIDQYNK"
     gene            complement(7007..7894)
                     /gene="galU"
                     /locus_tag="PXE26_001674"
     CDS             complement(7007..7894)
                     /gene="galU"
                     /locus_tag="PXE26_001674"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HDL5594242.1"
                     /translation="MKVIIPVAGLGTRMLPATKAIPKEMLILADKPLIQYIVNECVAA
                     GFKEIVLVTHSSKNAIENHFDTSFELETMLEKRVKRQLLDDVRSIVPKDVTLIHVRQG
                     QAKGLGHAVLCGRTVVGDEPFAVVLPDVLLGEFTANQKTENLAAMVKRFQETGYSQIM
                     VAPVPMENVSSYGVADCHGVDIPLGGAAPIAKMVEKPSIEEAPSNLAVVGRYVFSSNI
                     WNLLEKTPVGVGDEIQLTDAIDMLIHQETVEAFHMTGRSFDCGYKVGYMKAFVEYSLN
                     HDKCGKEFKAFIKELAKSL"
     gene            complement(8030..8215)
                     /gene="csrA"
                     /locus_tag="PXE26_001675"
     CDS             complement(8030..8215)
                     /gene="csrA"
                     /locus_tag="PXE26_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HDL5594243.1"
                     /translation="MLILTRKIGEVLLVGDDVEITVLSIRGNQVKLGVNAPKEISVHR
                     REIYERIKASVEEENAE"
     gene            complement(8305..10932)
                     /gene="alaS"
                     /locus_tag="PXE26_001676"
     CDS             complement(8305..10932)
                     /gene="alaS"
                     /locus_tag="PXE26_001676"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HDL5594244.1"
                     /translation="MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMN
                     QFKDVFLGLEKRPYSRATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYF
                     KQDAIKFGWEFLTSPQWLGLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNK
                     GAPYASDNFWAMGDTGPCGPCTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQF
                     NRLADGTMEKLPKPSVDTGMGLERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKDLD
                     NKSLRVVADHIRACSYLIADGVLPSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLV
                     PTLATVMGQAGEVLTQKQAHIQKTLKAEEEQFARTLERGLNLLEEALAKVENNTLSGE
                     VAFKLYDTYGFPLDLTADVCRERDIKIDEDGFNAEMTAQRERAKASSSFGTDYNNVIK
                     VDSKTCFSGYTETSLNDATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD
                     SGQISAEICNFEVVDTQKYGQVFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSA
                     THLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENI
                     QVIIEEMDIESAKAKGAMALFGEKYGEVVRVVEMSDFSIELCGGTHVKQTGDIGLFKI
                     TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAK
                     RTEKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLG
                     SAVVVFATTAEDKVNLIVGVTKDLTDKVNAGQLVGAMAEKVGGKGGGRPDMAMAGGSE
                     PQHLLQALSLAQEWITAKL"
     gene            complement(11127..11552)
                     /locus_tag="PXE26_001677"
     CDS             complement(11127..11552)
                     /locus_tag="PXE26_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDL5594245.1"
                     /translation="MYKHILVAVDLSEESLVLVRKGAALAEKCGAKLSLIHVDVNFSD
                     LYTGLIDINMSSVQYSVVEETNTALAELASKVNYPVSECLNGTGDFSQVLEEAVEKHN
                     VDLLITGHHQDFWSKFMSSTRRVMNNITVDMLVVPLADE"
BASE COUNT         3135 a         2692 c         2197 g         3553 t
ORIGIN      
        1 tttagcaaag ccttttaaac caacaacgtg aacatactct tggttattgg tgattttacg
       61 caccaattta taagttgtgc ctcgttcagg gctaatattt tcaggggctg caattaataa
      121 ctgcatatcc aaacgttcgc agagttcaaa tagcgtatta attgaggtag catctaatcg
      181 agccgcttca tctaagaaca ataagcgagc cggtagaata tctttggcac gcatacggcg
      241 agcttcttct tcccagcttt gaactaccat taagagaatc gacatacctg taccgatcgc
      301 ctcaccggtc gataatgcac tactttctgc acgcatccag ccgtctgcac cacggaaggt
      361 ttccacttct aaatctaagt agttacggta atccaataac tcttcaccaa tggtctgtgg
      421 tgtacgttgc cccatctcaa tatgagggtt cacccgttta tacaacatcg ctaaggcttc
      481 ggagaagctc agtttttggc tgtcgaataa atctttgtgt tcctcacgat tattggataa
      541 cgcattgagt aaaatagcgt gcgtatctcg gatattcacc accaaacgca ccccttttac
      601 ctgaccgaat gcaatatttt gtaaaccttg gttcagttgc aaaatgcgtt gttgttcacg
      661 ctgaatggtt ttacgtaaaa tatttgccac actttccgca ctgatcgcca gttttttctc
      721 acgaccggtt aattcattgg ttaagcgtga aagctcgatt tccatctgct caatcgcatc
      781 aatcggatca tcggttttga taatgtcttg gcgaatccgc tcacgcaaat gctgataaac
      841 cgcaataaag aacgccactt tgttttccgg cttgcgacta tcttcagaag cccgcaagct
      901 atcacgcagg tattcattat ccgccacggc ggtgcgtaat gccccgagag ctttatccga
      961 aatcgaacgt aattcttcag ccgattgata agccaattca cggcgattta aacgtttttc
     1021 cacatcgctg ttacgagata aacgttgcac aatacaccag ctggcttttg cctgcaccac
     1081 caattcacgt tgtgtatgat aatcacgttc ggctttacgt aaggtgcggt taaggttatc
     1141 catttccgcc tcgatcaccg caatttgttt atctaaataa cctttgcggg aacgttgctg
     1201 gcttaaacgt tgttgcaatt catcacggcg gaatctggct cgctcttccg ctccgctatc
     1261 accacgcacg cccaaatcgt caatttcacg aattaactct tgtagcattt ggtttttcgc
     1321 ctcataagaa ctgcgtaagc cggtcaatac ttggttatat tgtgaaagtt gagcttgagc
     1381 ttgacgcagc tgatcacgag cctgttcacg ctcacgttgt gcattttcca aacgttggcg
     1441 tagctgttcg gttaatgcag agccttctgt acccaccgtt tcttgatagc taaaatggag
     1501 gcggcgattc attacatcag ccaagctgaa cactttttgc tgtaacactt tttgctcggc
     1561 aactgaacgg cggtaatcgg cttccaactg ttcaaataaa gccggatcac tttttaatgc
     1621 ggctgcaatc ggctcaagtt ggcttaatgt tgctccaaat tggcggataa acatttcatc
     1681 ttcttctgcc aattctaatt gctcacgaca ttcctccgct cgtgcttcca gcgtttcatc
     1741 ggctaataaa ttcgcaagcg gtagaatttt attcaacatt tgcaactggg cttttacgct
     1801 ttctaattgg tgacgtaatt gctgttcgtt accggctgat tgtgccaatt cacgttcaat
     1861 ttctgcccgt tctgccgcaa tctcttgcat taacatttca gggttttctt ggaacgctaa
     1921 atttaagtgc gtgccgataa attggcttaa gtgttgatgt aaacgctggc atttctgcac
     1981 atcaaaggca cgttcagcgt gtttttctgc ggtttcatca cgctctgctt ttaaagtcgc
     2041 taaatgtttt tcacgagcag cacgtccgaa taacggcact tcagggaatt tagaataacg
     2101 ccattggcga tcggagactt tcaccaccac gccttcgcct aattcctcgg cactaaatac
     2161 cgcatcgtca aaggcggacg gatcaccttc aattaaataa agatcacttg ggcaatcgtc
     2221 taatttctct agctgtgttt taaccgcctc taaatcacgc actacaatag cgtggcgagc
     2281 ctcgccgtat aaggcggaga aataaggcgc atcttcaatt gatacatcat catataactc
     2341 agagagtaac actccaccaa aacgttctgc caactggttt aagcgggcgt cttccgagcc
     2401 gtccggctgg cttaagcgat taatttgctc atcaagcatt tgttctttac gagccaattc
     2461 atcacgagca agggtggctt cacgctcttt gctcagcata ttttgcataa actgcatcac
     2521 tgattggctg gcttcaaact tctcgccaca ttgctcttct aaacgagtca gagccgattg
     2581 tgccgtatgc caagccggtg cattcttcgc taattgctga tattgttgat taagctgttc
     2641 acgttgttgg cgttgggttg aacgttgttc tacaaagtcc gaaagctctg cctctaaatc
     2701 ttctaggcga gcttgctgct cttcaaaata ggcgtctaat tcttccgctg aattgagttg
     2761 ttgttgcgat ttttggttaa attccgccac taaacgctgg gcattttgct gttgttgcaa
     2821 acgctgttct aaatcgttga gtttttgacg taaactcacc gcttgctgag cttgcatttt
     2881 ttgctcaggg aaggcagaaa gtaacgcacg agcctcttcc cacgcttgca agcggtcaat
     2941 ttcaccggaa attttgcaaa ccaattcaaa cgctttttca aattgggttt tcgccatatc
     3001 cgacacgctt aaacgttgtt ccagctcaaa tacttgatcg gtaagatctt cggcttgagc
     3061 cacaaattct gcgtggtaat cttcaatatt atttaaatct aaattcacta agccggttag
     3121 ctgtttggct ttttctaacg cattcaccgc ttgttggtat tgcaatgcac gagtttgctg
     3181 tgcatctaag gcttgttggt aatccgccat ttgagaacgc aattcttcaa cgtgatcatc
     3241 tgcctcatcc gcacgagcct gagcattttc ggcaatttcc gcaatttctt ccaatgcctc
     3301 ttgctgttct tccagcttaa tattcagctc ttcaacttcg tcttggtagc gttcgatttt
     3361 ctcttggtgg cgtaacgcat tcatcactaa atttagatga tcgttcgcac tattgtaatc
     3421 cgcctctaac gccagctctg cttcggcaat atccgcactt tcacggctaa attccacaaa
     3481 gcgttgctgt tcgagcaaaa ttttggattt tgccgcatac cactctttgc gttgctctaa
     3541 ggcttgttgt acattgccac ggcgttcatt cgcattacgc atataatccg ccgacacata
     3601 attggtcgat tcggtaatta agcgtttgaa catatcccga tccgattgcg tgaccttaat
     3661 cgcctctaag gtcatacggt tttcacgcag agcggattcc atatcttgga acgcttggcg
     3721 aacgcccgta ttttccggca acaagtaatc acgcaaggat ttggtaatca cacttgaaat
     3781 accaccataa agcgaggctt cgattaattt gtagaatttg ctacggtcgg ctgccgaacg
     3841 aaggcgtttt gggattacgc ccaaatcgaa cataaaactg tggtaatcag taatcgaatg
     3901 gtactgtttg aattggactt cgctgttctc aaattgatct ttgagttcat ttaacgccag
     3961 cactcgagcc ttattcccca cttgttcggt cagtaggctg ataatgcttt gctcttgagg
     4021 aatattctgg agcgagaacg aacgaatatc gactttttta tcccgtccga caatttgttg
     4081 caaacgcacg ccggtaataa tccgttgccc acgggaattg aatgactcta acaccgcata
     4141 gcaaacaccc gcttttaact taccgtataa gcctttatca cgagaaccgg cggttgagcc
     4201 tgcttcagtc gtattacgga aattaagcaa ggttaaatct gggatcaagg cggtcacaaa
     4261 ccctgccatt gtggtggact tacctgcccc gttaccgcct gaaagcgtgg tcactaagtc
     4321 atctaaatca aaggttcgag caaaaaaacc gttccagtta atcagcgtta aagagagaaa
     4381 tttaccgcgt tgtacatcat tcgggcgtgc aagcggtgca atttgaggat tattttgcaa
     4441 ttctgtggta tcaatcatta tgttttctca ctaattgtcc tagcacgcta aagcgtacta
     4501 ggttaggtat aggtgagtag ctccgctact ctaatcgcaa cctcagcctt ggagggctgc
     4561 tttatgctta acctagttcg gctttaccgt gtctagggca gactcattaa atgctgaatc
     4621 tattcgaatg aaatcactca ttttctccgt caaagggggc ttcatctgca atattttcat
     4681 ctatttcaac cgcttgttcg tttaacaacg caggggttgt cgcttcacca tcacgaatta
     4741 agcgaagctg tgcctctctt gggtcatcac cggtacgcac atcagcccca aaacggaaga
     4801 ccgattctga aatcacaaat tttttgctgt tttgctcgcc tactcgggta ataatgccga
     4861 tacgggctaa tctgcgtaac gctccgccgg ctttttctgc cagcttggca cggtctaaat
     4921 cggaaccggt cgaacgtggg tttaccgctt ttaataattt gctttcatcg gcaagactga
     4981 gtaattcttc atacacatca tcttggctga aaatcccctg ctgagccaaa cgttccggac
     5041 ttaaatagag gtagcacaac accttaccca ctaacatttc catttctgac attgccgaac
     5101 gggcaattag tgtcgaggct ttcgggcgta ggtagaaaaa gccttccggt gctcgaatca
     5161 actcaacgtg ataacggcgg taaaaactct ctagttccgc ttgaaaatcc atcaaaaaga
     5221 cgtgttggtc aagctgctcg gtattgatat ggcgaccggc tcgtaattgg ctgtctagct
     5281 ccggaaaaat cgggttggca atcgcaagtg ccagtttcgg ggaaatgaaa tcttggatat
     5341 tctctgtcat tgtcattctc ttcaattttg caaaattctg ggtaaaaacg accgcttgtt
     5401 atttattgta ttggtcgata acattcgcct gcacttccgc cccttgctcg ttaatcggct
     5461 gccattgtgg gtaaacggct tggctatctt ggcttgccat acctaactta acagcttgat
     5521 cgacaataat acgagccacg tcaaaatggc gggattccgg gaatcgggca agctgttcac
     5581 gcaagataac gcctaaatct atcggtttac cttcagcacg gaacggcgct aaatgagctt
     5641 gcattgccga aacaatttgc tcttgcacat ctgaaagcga ctcatactct aactcacttg
     5701 gcaactcgcc caccgattct gcctcattta acattgcttc atcatcacgc aagtccagta
     5761 acgaatcggc ttttgcagta taaagcaacc aagggctgtt gtaataatct tgaatcgatt
     5821 ggcgtaaccg ttgcccgaat acacggtttt tgtccatatc aatcgctgta cgaataaatt
     5881 tatgcacatg gcggtcatag ccgatccaaa gatcgatagc ttgttgtccc cagctgataa
     5941 tacggtctaa cttattttgt agattcacaa tcagctgatc gataaaatcc aaatcattac
     6001 gagccatcag gcaactttga atccgcaata attgagcttg cagtttatca ccagcggcat
     6061 ttaaggtatc ttgcaactca cgcaaattcc ccgaggtttc gtctaacaat tgctcacaac
     6121 tcataattgc ttcgtgccag ttttggctaa gcagttcggc tattcgttca cggatttggt
     6181 gctgattttc gtccataatc cgttgtgaaa gatcgatgct gtcaaagatt tccgccaccg
     6241 aatatttcaa tggggcaaac acattatttc gccaaaaacg ttcatcttgt gcctgctcta
     6301 ttccctcttc cgctgctact gaagctcgct gaatttcatc tgccacaatc gaaagttgaa
     6361 tcgataaacg cagggtagaa aattcccgct ggcgaacgta ataatttgaa attcccaccc
     6421 ctaacggcgt aacacgataa atcgccaaac cttccgtaaa ttcgctacta aaacggttta
     6481 acaaccgttg tctgactaaa tcattaatcg cattattggc acgctgggta aaagtggcat
     6541 cagattgctc aaacgaattt gaaacataac ggaaaagatc aataagatca ctttctaaca
     6601 attcaccatc tgtctgttct tggttataaa tagagatagc aagtagaaac gctaagcggt
     6661 cggaagaaag cgaaagtgaa aattcacgat ctttcgtcca agagatgagt tctggaatag
     6721 tctgtgccaa ttcgttctgc atacgggctt aatctttaat ttctatacaa aaatggtatt
     6781 tattgtaact gaatgtaatc aaaatgggaa tggataaaac gcagacaaga gaaatgaaca
     6841 atataagcgg tcaaatatgg gtgatttttt gcaaaaagta ttttaaaggt aaatgaatcc
     6901 gaaaatttat tatcactacg ctaatttatg ataccataaa tagaaaagac tggatccaat
     6961 agaatatcag acacagcccc ttagatcata gtctaaactc taaggcttag agtgatttag
     7021 ctaactcttt aataaatgct ttaaattctt ttccgcattt gtcatgattt aaactatatt
     7081 ctacaaatgc tttcatatag ccgactttat aaccacaatc aaatgagcgc cctgtcatat
     7141 gaaaagcttc aaccgtttct tggtgaatca acatatcaat tgcatccgtc agctggattt
     7201 catcacctac gcctactggc gttttttcta ataaattcca aatatttgag gaaaatacat
     7261 aacgtcctac taccgctaaa ttagaaggcg cctcttcaat acttggtttt tcaaccattt
     7321 tcgcaatagg cgctgccccc ccgagaggga tatctacacc atggcagtca gcaaccccat
     7381 agctacttac attttccatt ggaaccggcg caaccataat ttggctatat ccggtttctt
     7441 ggaaacgctt caccatcgca gctaaatttt ccgttttttg gtttgctgta aattcaccaa
     7501 gtaatacatc tggtaataca accgcaaacg gttcatcgcc aaccactgtt cgtccacata
     7561 gaaccgcatg acctaaacct ttggcttgcc cttggcgaac gtgaattaag gtaacatctt
     7621 ttggtacaat agaacgtaca tcatctaata attgacgttt tactcgtttc tccagcatcg
     7681 tttccaattc aaaagaggta tcaaaatggt tttcgatagc attctttgaa gagtgagtaa
     7741 ccaatacaat ttctttaaaa cctgcagcca cacattcatt tacaatgtat tgaataagag
     7801 gtttatctgc aaggataagc atttcttttg gaatagcttt ggttgcgggt aacatgcgcg
     7861 ttcccaatcc agcaacagga ataatgactt tcatttggaa tcctttgatg acttaacata
     7921 ttagatataa ctgaaataaa ccgcttagac ataacaggcg gtcaattttc agaaaatttt
     7981 gcattgcctg cttcgctgtt atcatctagc agctttacag ttaaaatgct tattccgcat
     8041 tttcctcttc tactgaggct tttattcttt cataaatctc tcggcggtgt acagagattt
     8101 cttttggtgc attcacacct aatttaactt gatttcctcg gatgctgagt accgtaatct
     8161 caacatcatc tcctacgagt aaaacttccc caatcttacg agttagaata agcataattg
     8221 tctcctaaaa agtgaaaaac tctataaata cttaaatata gagtaaagtt ttaaaggcga
     8281 gttcagctcg ccttgttatt atttttaaag ttttgctgta atccattctt gagcaagtga
     8341 caatgcttgc aataaatgtt gtggttctga gcctccggcc attgccatat caggacgtcc
     8401 gcccccttta cctcccactt tttcagccat tgcaccaact aattgaccag cattgacttt
     8461 atcggttaaa tctttggtca cacctacaat caaattgact ttatcttccg ccgtagtcgc
     8521 aaatacaaca actgcactgc ctaattgatt ttttaggtca tcaaccatcg ttctcaatgc
     8581 ttttggttca acattctcta attgttgaat cactacattc acgccattga tttgggtagc
     8641 ttgtttggct aaatctgaac ctgcttgtgc tgcaagttta tcttttagct gttgaagctc
     8701 tttttctgta cgtttagcct tctcttgtaa ttgaacaatt ttctcaacga atgaatgact
     8761 gtctgctttt aacaattcag cactttgttg aacggcttgt tgtaaggtat gcaaccaagc
     8821 aatcgcattt tcaccagtga cagcctctat acggcgtaca cctgctgcta ccgcaccttc
     8881 agaggtaatt ttgaataagc caatatcacc ggtttgttta acgtgtgtgc cgccacaaag
     8941 ttcaatcgag aaatctgaca tttccactac acgcactact tcgccatatt tttcaccaaa
     9001 taacgccatt gcacctttcg cttttgcaga ttcaatatcc atttcttcaa tgattacctg
     9061 aatattttca cgcactttag cattcacgat acgttcaact tcttcaagtt gtgatttagt
     9121 aattgcttcc ggctgagaaa tatcaaaacg taaaatattt tctgacacta atgagccttt
     9181 ttgagcaacg tggtcgccta gcacttggcg taacgcagaa tgcagtaagt gggtagcact
     9241 gtggtttaat gtaatagcat gacgacgctc tctatctacg atcgtattaa ctttgtcgcc
     9301 aacagaaagt gagccggaag ttaattgccc aatatgcccg aatacttgac catatttttg
     9361 cgtatctact acctcaaaat tgcaaatttc tgcggaaatt tgaccgctat ctcccacttg
     9421 tccgcccatt tctgcataga atggggtttt atctaaaatc actaccgcat tttcacccga
     9481 ttgaatagac tcaaccgatt ttccattact aaataaccca attacagtag catcatttaa
     9541 gctggtttca gtatatccac taaagcatgt tttactgtcc actttaatca cattgttata
     9601 atctgtgcca aagctactgc tggctttcgc acgctcacgt tgtgcggtca tttctgcatt
     9661 gaagccgtct tcgtcaattt taatatcacg ttcacggcaa acatctgcgg ttaaatctaa
     9721 cgggaagcca taagtatcat aaagtttgaa cgcaacttcg ccagataagg tgttattttc
     9781 aaccttcgct aatgcttctt ctaataaatt caatccacgc tcaagagtac gggcaaattg
     9841 ctcttcttct gctttgagtg tcttttgaat atgcgcttgt ttttgggtca gcacctcacc
     9901 agcttgcccc attaccgttg caagtgttgg caccaattta tagaaaaagg cttcttttgc
     9961 acccaaaata ttaccgtgac gaaccgcccg gcggataata cggcgtaata catagcctct
    10021 tccttcattt gaaggtaaaa caccatcggc aatcagatag gaacaagcac gaatatggtc
    10081 tgccactaca cgtaaagatt tattatctaa atctttcaca ttaagcaaag tagcgacttc
    10141 tttaattaaa gtttggaaaa tatccgtttc gtagttggag tttacgtgtt gcattaccgc
    10201 agtcatacgt tctaacccca tccctgtatc tacagaaggc ttaggcagtt tttccatcgt
    10261 accgtctgct aaacgattga actgcataaa tacaatattc catacctcaa tatagcggtc
    10321 gccatcttct tctgggctac ccggtaagcc accccaatgt tcaggcccgt gatcatagaa
    10381 aatctcggta caagggccac aagggccggt atcgcccatc gcccagaagt tatctgaagc
    10441 ataaggtgcg cctttattat cgccaatgcg aataatatgt tccgatggta cacctacttc
    10501 tttatgccaa atatcgtagg cttcatcatc agtttcatac acagttacat ataatttttc
    10561 ttttggtaag ccaagccatt gtggagaagt taaaaactcc caaccgaatt tgattgcatc
    10621 ttgcttgaag taatcaccaa agctgaaatt ccccatcatt tcaaaaaaag tatgatggcg
    10681 agcggtataa cctacgtttt ctaaatcatt gtgtttacca cctgcacgta cacaacgttg
    10741 tgccgtagtc gctctgctat aagggcgttt ttctaaccca agaaaaacat ctttgaattg
    10801 gttcatgccc gcattggtaa ataataatgt cggatcattc tcgggaacaa gagagctgct
    10861 tggaacaatc gtatgtcctt tagtttggaa aaactctaga aaagattgtc tgatatctga
    10921 agttgttttc attaaaaatc actctttttg taaatagaag ttaaacattt agttatcttg
    10981 ctattttaca cattttttat gctattgggg gagctatatg ctacttattt tttcaattaa
    11041 ataatttttg taaattttcc caaaaaaata accgcttgta agacagataa actgtctcaa
    11101 gcggttattt ttcattcact ttcttgctat tcatctgcta atggcacaac cagcatatca
    11161 acagtgatat tattcatgac tcgacgagtt gaagacataa atttactcca gaagtcctga
    11221 tgatggccag tgatgagtaa atcgacattg tgtttttcta cggcctcttc caaaacttga
    11281 ctaaaatctc ccgttccgtt taaacattca gatacaggat aatttacttt tgaggcaagt
    11341 tcagccagtg ccgtatttgt ttcttcaaca acactgtatt gtaccgaaga catattaata
    11401 tcaattaatc ctgtatagag atccgaaaaa ttaacatcaa cgtgaatgag ggaaagttta
    11461 gctccgcatt tttctgctaa cgcagccccc ttacgcacta aaacaagact ttcttcagaa
    11521 agatccactg caactaagat atgtttatac ataatatgct ccttgcttgt gagagtt
//
LOCUS       DANLZD010000088        11359 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.088, whole genome shotgun sequence.
ACCESSION   DANLZD010000088 DANLZD010000000
VERSION     DANLZD010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11359
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.088"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            284..1828
                     /gene="leuA"
                     /locus_tag="PXE26_001678"
     CDS             284..1828
                     /gene="leuA"
                     /locus_tag="PXE26_001678"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HDL5594246.1"
                     /translation="MSNNNIIIFDTTLRDGEQSLKASLTVKEKLQIALALERLGVDVM
                     EVGFPVSSAGDFESVQTIARHIKNSRVAALSRAVAKDIDAAYEALKVAEAFRIHTFIA
                     SSALHVEAKLKRSFDDVVEMAVAAVKRARNYTDDVEFSCEDAGRTGIDNICRIVEAAI
                     NAGATTVNIPDTVGFCLPNEYGNIIHQVMNRVPNIDKAIVSVHCHNDLGMATANSLTA
                     VQNGARQIECTINGIGERAGNTALEEVVMAIKTRQEFMGVDTRINTQEIHRVSQMVSQ
                     LCNMPIQPNKAIVGSNAFAHSSGIHQDGMLKNKNTYEIMSPETIGLKKEKLNLTARSG
                     RAAVKGHMADMGYTETDYDLDKLYEAFLQLADKKGQVFDYDLEALAFIDMQQGDEDRL
                     KLDVITTQLISGLPASAFVQVELDGVRQSATSQGGNGPVEATYNAIMNIVGMELKMSH
                     YNLTAKGEGAEALGQVDIVVEYEGRKFHGVGLATDIVESSARALIHAINAIYRSQKVA
                     DLKAKK"
     gene            2050..2622
                     /gene="rpoE"
                     /locus_tag="PXE26_001679"
     CDS             2050..2622
                     /gene="rpoE"
                     /locus_tag="PXE26_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000003307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HDL5594247.1"
                     /translation="MSEQITDQELVEKAQKGDKKAFNLLVVRYQNRVAGLLTRYVARD
                     DIPDIVQESFIKAYRSLESFRGESAFYTWLYRIAVNTAKNHLTSLGRRPPKEDILAED
                     AESYDVGAQLRESDTPENLILSEELKKVVFDTIENLPDELKTAIRLRELEGLSYEEIA
                     EVMECPVGTVRSRIFRAREAIDAKIKPLMQ"
     gene            2668..3291
                     /locus_tag="PXE26_001680"
     CDS             2668..3291
                     /locus_tag="PXE26_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5594248.1"
                     /translation="MQERITQQNERLSAYMDGQNVDTAFVETLTNSPELQQKWASYHT
                     IRSVMQGDEIILGRDFSAKMEALLENEEIESQANVEKPKGLLLKLKRWGTPIMQAGIA
                     ASVCLVAVLGVNSMNASDEIAQTQQPVLQTLPFSNSVEAVSYNAPVQDQPTEEQLELQ
                     QRKINALLENHELQRRTNNVKNLTLSEEEKQKAQTSSNTESEPNIQK"
     gene            3449..4432
                     /locus_tag="PXE26_001681"
     CDS             3449..4432
                     /locus_tag="PXE26_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucB/RseB C-terminal domain-containing protein"
                     /protein_id="HDL5594249.1"
                     /translation="MLFKIKKYLLLFWVISACYTFAWAESTIKTPLAYLTAMSEAHKK
                     STYELVYILQQGSDTESFRLRHAFTHNKEYAQLLNLDHSREEIILKNNKVSYLGYNFR
                     PFSLNSSQILDNLPNVLYTDYANLKGYAFLDAGKDRISDRITKVIRMKPNDTLRYAYI
                     LWIDEETHLLLKSQVLNMDNLVLEEFRVLQLYQSPELDRIANVIESLMLPTLTTVKKE
                     EFPKSDGWQVKWLPTGFRLIQQQTVTGATYQVESEYVDSRVYSDGLSTLTIYIMPSQG
                     VSFNEYAWQQGKLTILNQTINDRDIVIIGDVPLQSAKQIMNNIGFKEGAQP"
     gene            4429..4893
                     /locus_tag="PXE26_001682"
     CDS             4429..4893
                     /locus_tag="PXE26_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SoxR reducing system RseC family protein"
                     /protein_id="HDL5594250.1"
                     /translation="MMIEQATVVEYQNGVAIVQCYAKSSCGGCVAQSACGSKALSALA
                     GEKIDPRFRIEVDEPLKVGDKVELGLAENILLKSVFLIYGIPLLVLVMTAVGFSQFFA
                     NELIVLFIMLLSTGITFWAVRKLIHKHSKQANFSPIFLGKVLGDYNGKNMAK"
     gene            4871..6556
                     /gene="fadD"
                     /locus_tag="PXE26_001683"
     CDS             4871..6556
                     /gene="fadD"
                     /locus_tag="PXE26_001683"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase FadD"
                     /protein_id="HDL5594251.1"
                     /translation="MEKIWLNNYPPYSPKTIETDQYESLVEMFEAAIQRHPDIPAYIN
                     MGQVLTFRKLEERSRSFAAYLQNELRLKKGDRIALMMPNLLQYPIALFGALRAGLVVV
                     NVNPLYTPRELEHQLNDSGAKAIVIVSNFAATLEKIVFNTEIKHVILTRMGDQLSFGK
                     RTLVNFVVKYIKKLVPKYKLPHAVSFREALSIGKQRQYVKPNIVSQDLAFLQYTGGTT
                     GVAKGAMLTHQNLIANMMQAKWIVEPLLGNSANMIGLVPLPLYHVLALSMNCLLFIEL
                     GLTGLLITNPRDIPGFIKELKKYKVSVITGVNTLFNALLNHESFKEVDFSHLKLSVGG
                     GAAIQSSVAKRWHDLTGVHIIEGYGMTECSPLISATRGDSVEYSGSIGVPVPNTDIRI
                     VDDEGKEVPLGERGELVVKGPQVMQGYWNRPDETAQVLQDGWMATGDIVVMGDDLNLR
                     IVDRKKDMIIVSGFNVYPTEIEEVISQNPKVNEVVAIGVPSEASGESIKIFVTKKDES
                     LTRDELRTYCRQFLTGYKIPRDIEFRDELPKSNVGKILRRVLRDEELAKVNKA"
     gene            6581..7210
                     /gene="upp"
                     /locus_tag="PXE26_001684"
     CDS             6581..7210
                     /gene="upp"
                     /locus_tag="PXE26_001684"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HDL5594252.1"
                     /translation="MKIVEVKHPLVKHKLGLMREAEISTKDFRELANEIGSLLTYEAT
                     KDLEMESVEINGWSGEKIAVERIKGKKVTVVPILRAGLGMMDGVLEHIPSARISVVGI
                     YRDEETLKPVPYFSKLANDVDERLAIITDPMLATGGSMVATIDLLKKAGCKQIKVLVL
                     VAAPEGIKVLEAAHPDVELYTASIDSHLNENGYIIPGLGDAGDKIFGTK"
     gene            complement(7321..8187)
                     /gene="rsmA"
                     /locus_tag="PXE26_001685"
     CDS             complement(7321..8187)
                     /gene="rsmA"
                     /locus_tag="PXE26_001685"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HDL5594253.1"
                     /translation="MSSTNSKKHLGHTARKRFGQNFLHDMNIIHSIVSAINPKNGQFL
                     LEIGPGLGALTEPVAELVDKLTVVEIDRDLAERLRHHPFLNQKLTIIEQDALRFNFRD
                     YFNQLNLDEDSVRVFGNLPYNISTPLIFHLLTFHDLIQDMHFMLQKEVVKRLCAAPNS
                     KAYGRLTIMAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPYNQLPYPAKDVYWLNR
                     VTTQAFNQRRKTLRNALSTLFSAEQLDALGVDLTARAENLTIADYVRLANWLHDNPPA
                     IDTTEELVDEDC"
     gene            complement(8249..9199)
                     /locus_tag="PXE26_001686"
     CDS             complement(8249..9199)
                     /locus_tag="PXE26_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDL5594254.1"
                     /translation="MKMKLVKSLFAVAVATMSLTQTAHAFEERVVALVNDTPIMQSQV
                     QRVLGKKKATETAQRAAIDQVIDDMLVQQAMKEAGVKVSPAAVNQAVENVAIQNGITY
                     GQLLDALDYQGITLEQFKRNIAQQMAMEQVRHISISKSIQVAPQQVQALAKELMAKDK
                     AAGKLKTVSGKEHRISHILLKTNPILNDAQAKAKLSSLTTDINSGKISFEEAAKTHSV
                     DYASGADGGDLGFNFLEIYDPAFANVASKIKPNQISAPFKSQFGWHILKVTDTRNGDR
                     TEDAYHQRAYQQLVNKQAEEASKDWVKALRKTANIQYVGQ"
     gene            complement(9272..9826)
                     /gene="pyrR"
                     /locus_tag="PXE26_001687"
     CDS             complement(9272..9826)
                     /gene="pyrR"
                     /locus_tag="PXE26_001687"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HDL5594255.1"
                     /translation="MAREKIIIDTEQFQRTISRISHQIIEKHGDLQDVVIVGIKRRGA
                     EIAELIQKRIEDLAQTRLPYMALDITFYRDDLDLIYQDPVFMGADNQLNLNGKKVILV
                     DDVLFTGRTIRAALDALLDFGRAARIELVIFVDRGHRELPIRADYVGKNIPTAKNEQI
                     QVQTLSYDGINQVVLVPAANKESA"
     gene            complement(9840..11267)
                     /gene="hldE"
                     /locus_tag="PXE26_001688"
     CDS             complement(9840..11267)
                     /gene="hldE"
                     /locus_tag="PXE26_001688"
                     /EC_number="2.7.1.167"
                     /EC_number="2.7.7.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase/D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase HldE"
                     /protein_id="HDL5594256.1"
                     /translation="MMMQYSPKFNNAKVLVLGDVMLDRYWFGATNRISPEAPVPVVKV
                     QDIEERAGGAANVAMNIASLGVPVTLHGLIGDDDAGRALDKLLNSHQIQNHCVVINSH
                     PTITKLRILSRHQQLLRLDFEEGFHNVDSTALLAKLSQEITAYGALILSDYGKGTLES
                     VQQMIQIARNAKVPVLIDPKGTDFERYRGATLLTPNMSEFEAVVGHCKDEDEIVSKGL
                     KLIADYDLSALLVTRSEKGMTLLRPNHEPYHLPTQAKEVYDVTGAGDTVISVLATAIA
                     DGRAYEEACYLANAAAGVVVGKLGTSTVSPVELENAIHQRTATGFGVVSEAELKAIVE
                     EAKKRGEKIVMTNGCFDILHPGHVSYLENARKLGDRLIVAVNTDASVKRLKGEARPIN
                     DLAARMAVLAGLASVDWVVPFDEDTPQRLISEILPDLLVKGGDYKPEEIAGSQEVWAN
                     GGDVRVLNFENGCSTTNVIKKIQAL"
BASE COUNT         3459 a         2160 c         2458 g         3282 t
ORIGIN      
        1 atgacttgaa ttaatgggct ggtaaacggt tgcgtgaaga gaaaaatgct attgacattg
       61 atttggataa ggataatata cacctcaact actgaataac aatgcaaaca taaacataca
      121 acacaacatg gaaaaattta ccttactccg attatctctg ttatcgtatt ttgtgcgagg
      181 ataaagattg attggaaaaa gtaaatggac tatccacatt cttgcccgca ccttaaaatg
      241 cgggcttttt ttatcaaata aaaacaccta aaaagaggct tctatgagca acaataacat
      301 tattattttt gatacgactt tacgtgatgg tgagcaatca ttaaaagcaa gtttaaccgt
      361 aaaagaaaaa ttgcaaattg cccttgcttt agaacgttta ggggttgatg tgatggaagt
      421 cggttttcca gtttcttcag cgggcgattt tgaatcagta caaaccatcg ctcgtcatat
      481 caaaaacagc cgggtggcgg cgctttcccg agcggttgca aaagacattg atgcagctta
      541 tgaagcctta aaagtagcag aagcattccg tatccatacc tttattgcca gctcggcatt
      601 acacgttgag gctaaattaa aacgttcatt tgatgatgta gtcgaaatgg cggttgcagc
      661 ggtaaaacgc gccagaaatt atactgatga tgttgagttt tcctgtgaag atgctgggcg
      721 tactggaatt gataacatct gccgcattgt agaagctgcc attaatgccg gtgcaaccac
      781 agtgaatatt ccggatacag tcggtttctg tttaccgaat gaatacggca atattatcca
      841 ccaagtgatg aaccgtgttc cgaatatcga taaagcgatt gtctctgttc actgccataa
      901 cgatttaggt atggctaccg ccaactcatt gacagcggtg caaaacggag cgagacagat
      961 tgagtgtact atcaacggta ttggcgaacg tgccggtaac accgctcttg aagaagtggt
     1021 aatggcaatt aaaacccgcc aagaatttat gggggttgat acccgcatta atacccaaga
     1081 aattcaccgt gtcagccaaa tggtcagcca gctttgcaat atgccgattc agccgaacaa
     1141 agcgattgtc ggtagcaatg cctttgctca ctcttcaggt attcaccaag acggtatgct
     1201 gaaaaataaa aatacttatg aaattatgtc gccggaaacc atcggcttga aaaaagagaa
     1261 gctgaattta actgcccgtt caggtagagc agcggtgaaa gggcatatgg ctgatatggg
     1321 ttatacggaa acggattacg atttagataa actttatgag gccttcttgc aacttgctga
     1381 taaaaaaggg caagtgtttg attatgactt agaagctctt gccttcattg atatgcagca
     1441 aggcgatgaa gaccgcttaa aattagatgt aattaccacc caactaatca gcggtttacc
     1501 ggcttcggct tttgtacagg tggaattaga cggcgttcgt caaagtgcta catctcaagg
     1561 gggaaatggt ccagttgagg caacttacaa tgccattatg aacattgtgg gaatggagct
     1621 aaaaatgtcg cactataatc tgactgcgaa aggcgaagga gcagaagcat tagggcaagt
     1681 ggatattgta gtggaatatg aaggtcgaaa attccacggt gtgggtttgg caaccgatat
     1741 tgtggaatct tcagcccgag ctttaattca cgccattaat gcgatttacc gttcacaaaa
     1801 agtggcagat ttaaaagcga agaaataact tatagagcga aagcataaca tagacaagcg
     1861 gtcggatttt ttgaaatttt tgcaaaattt cgctaaaatc cgaccgcttg cttagtttat
     1921 taagtaggtt ttatctagga atgtaaaaaa ttacacaatt tttcaaattt tttgaacttt
     1981 tgtcataaag cacacactaa caaagtgtgc aatggaaaat gacatattga tatttaggag
     2041 agtccgcagt tgagcgaaca gatcaccgac caagaattag tcgaaaaagc acaaaaaggt
     2101 gataaaaaag catttaattt acttgttgta cgttatcaaa atagagtagc cggtttgctg
     2161 actcgttatg ttgcaagaga tgatattccg gacattgtgc aagaatcttt tattaaagcc
     2221 tatcgttctt tagagtcttt ccgtggcgaa agtgcttttt atacgtggct ttatcgcatt
     2281 gcagtgaata ctgcgaaaaa tcatttaacc tctttaggca gaagaccgcc aaaagaagat
     2341 attcttgccg aagacgctga aagttatgat gtaggcgcgc aacttcgtga aagtgatacg
     2401 ccagagaatt tgatattatc cgaggaatta aagaaagtcg tgtttgatac gattgaaaat
     2461 ttacctgatg agcttaaaac cgccattcgt ttaagagaat tggaagggct aagttacgaa
     2521 gaaatcgcag aagtgatgga atgtccggtt ggtactgtac gttcccgtat tttccgagca
     2581 agggaagcga ttgatgctaa aatcaagcca cttatgcaat agatagaaag attattttag
     2641 aagagattta aatcattgga gtcaattatg caagaacgca tcactcaaca aaatgaacgc
     2701 ctttcagctt atatggatgg gcaaaatgtt gatacagcat ttgtagaaac attaactaac
     2761 agccctgaat tacagcaaaa atgggcaagt tatcacacta ttcgtagtgt gatgcaaggt
     2821 gatgagatca ttttagggag agatttctct gctaaaatgg aagcattact ggaaaatgaa
     2881 gaaattgaat ctcaagcaaa tgtagagaaa cctaaaggct tattgctcaa gctcaagcgt
     2941 tggggaactc caattatgca agccggtatt gcagcttcag tgtgcttagt tgcggtatta
     3001 ggggttaatt caatgaatgc gagtgatgaa atagctcaaa cgcaacaacc agtattacaa
     3061 acattgccat ttagcaattc agttgaagcg gtaagttata atgcgccagt tcaagatcaa
     3121 ccaacagaag aacagttaga gcttcaacag cgtaagatta atgcgttatt agaaaaccat
     3181 gagttacaac gccgtactaa taacgttaaa aatttaacct tatctgagga agaaaagcaa
     3241 aaagcacaaa cttcttccaa tacagaatca gagccaaata tacaaaaata ataggtaaaa
     3301 taagttactg aaagccacat aatttatcca taattatgtg gctttttgta tgtaaatgta
     3361 gcgaaaaaat aagaaataac caacaagtag cgaaatagtg aaaatttttt gctaaaataa
     3421 cctaagttaa tttggcttga gaataaatat gctttttaag ataaaaaaat acttattgtt
     3481 gttttgggtt atttctgcct gctatacatt tgcttgggca gaatcaacta ttaaaacacc
     3541 attagcatat ttaacggcta tgtcagaagc acataaaaaa tccacttatg aattagttta
     3601 tattcttcaa cagggaagtg atacagaatc tttccgttta cgtcatgctt ttacccataa
     3661 taaagaatat gcccaattac tgaatttaga tcacagccga gaagaaatta ttttaaaaaa
     3721 taacaaggtc agctatttgg ggtataattt tcgtcctttt agtttaaata gttcacagat
     3781 tttagataac ctccctaatg tactttacac agattatgca aatttaaaag gttatgcctt
     3841 tttagatgct ggtaaagatc gtatttctga ccgaattaca aaggtaattc gtatgaagcc
     3901 aaatgatact ttaagatatg cctatatact atggattgat gaagaaacac atttattact
     3961 taaaagccaa gtcttgaata tggataattt ggtattagaa gaattcagag ttttgcaact
     4021 ttatcaatct ccagaattgg ataggattgc aaatgtaata gaatcactaa tgttaccaac
     4081 attaacgaca gtgaaaaaag aagaatttcc taagtctgat ggttggcagg tgaagtggtt
     4141 gccgacaggg tttaggttaa ttcagcaaca aacagtcaca ggtgcgacat atcaagtgga
     4201 aagtgagtat gtagatagca gagtatatag tgatggttta tctacattaa ctatttatat
     4261 tatgcctagc caaggcgtga gttttaatga gtacgcttgg caacaaggta aattaacgat
     4321 tttaaatcaa acgattaatg atagagatat tgtgattatt ggtgatgtgc cgttgcaatc
     4381 ggctaagcaa attatgaaca atattggttt taaggaagga gctcagccat gatgatcgaa
     4441 caggctacgg tggtggaata tcagaatggt gtggctattg tacaatgtta tgctaaaagt
     4501 agctgtggtg gctgtgtagc tcagtctgct tgtggcagca aagcattatc agcattagca
     4561 ggtgaaaaaa ttgaccctcg ttttcgtatt gaggtagatg aacccctaaa agtaggcgat
     4621 aaggttgaac tagggttagc tgaaaatatc ttgctcaaaa gcgtgttttt aatttatggc
     4681 attcctctgc tggttcttgt gatgacagcg gtcggatttt cgcaattttt tgcaaatgag
     4741 cttattgttt tatttataat gttgctttca acaggtataa cattctgggc tgtaagaaaa
     4801 ttgattcata aacacagcaa acaagcaaat ttttcaccta tctttttagg taaggtttta
     4861 ggagactata atggaaaaaa tatggctaaa taattatccg ccttattcac caaaaacgat
     4921 tgaaacagat caatatgaat ctttagtgga aatgtttgaa gcagcgatac aacgccaccc
     4981 tgatattcca gcttatatta atatggggca ggttttaacg ttccgtaaat tggaagaacg
     5041 tagccgctcg tttgccgctt atttgcaaaa tgaattacgc ctgaaaaaag gtgatcgaat
     5101 cgcattgatg atgccgaatt tattgcaata tccgatcgct ttatttggcg cattacgtgc
     5161 cgggcttgtg gtggtgaatg tcaacccgct ttatacgccg cgtgaattag aacatcaatt
     5221 aaatgacagt ggtgcgaaag cgattgtgat agtctcgaac ttcgcggcta ccttagaaaa
     5281 aattgtcttt aatactgaga ttaagcacgt tattttgacc cgaatgggcg accaactttc
     5341 attcggcaaa cgcaccttag tcaattttgt ggtgaaatac atcaaaaaat tagtgccgaa
     5401 atataaattg ccacatgcgg tcagcttccg tgaagcctta agcattggca aacagcgtca
     5461 atatgtaaaa ccgaatattg tcagccaaga tctcgccttt ttacaataca ctggcggtac
     5521 tacaggtgta gcgaaagggg caatgctgac tcatcaaaac ttaattgcta atatgatgca
     5581 ggcaaaatgg attgttgagc cattgttggg taattctgcc aatatgattg gattggtacc
     5641 tttaccgctg tatcacgtct tagcactttc gatgaattgc ttgctcttta tcgaattagg
     5701 acttaccgga ttattaatta ctaatccgcg cgatattcca ggctttatta aagaattaaa
     5761 aaagtacaaa gtttcagtga ttactggggt aaatacattg tttaatgcat tacttaatca
     5821 cgaaagtttt aaagaggttg atttttcaca cctaaaatta agtgtaggtg gcggtgcagc
     5881 gatccaatct agcgtggcaa aacgctggca cgatttaacc ggcgtacata ttatcgaagg
     5941 ttatggaatg acagaatgtt ctccgctgat tagtgcaacc cgtggcgatt cggtggaata
     6001 ttccggctct attggcgtgc cagtgccaaa tactgacatt cgtattgtgg atgatgaagg
     6061 caaagaagta ccactcggcg aacggggcga gctggtggtg aaagggccgc aagtaatgca
     6121 aggctattgg aaccgtcctg atgaaacggc acaagtgcta caagatggtt ggatggcaac
     6181 cggtgacatt gtggtaatgg gggatgatct gaacttacgc attgttgatc gtaaaaaaga
     6241 tatgattatt gtctccggtt ttaatgtgta cccaaccgaa attgaagaag tgatttccca
     6301 aaacccaaaa gtgaatgaag tagtggcgat tggtgtgccg agtgaggctt ccggcgaaag
     6361 cattaaaatt tttgtaacca aaaaagatga aagtttaact cgagatgaat tgagaaccta
     6421 ttgtcgtcaa ttcttaaccg gctacaaaat tccaagagac atcgaattcc gtgacgaatt
     6481 accaaaaagt aatgtcggca aaattcttcg ccgagtgtta agagacgaag aattagcaaa
     6541 ggtgaataag gcttaaatta cactaattaa ggagcttaaa atgaaaattg ttgaagtaaa
     6601 acacccactt gtaaagcata aattgggctt aatgcgtgaa gcggaaatca gcaccaaaga
     6661 tttccgtgag ctagcgaatg aaattggtag tctgcttact tacgaagcaa ccaaagatct
     6721 ggaaatggaa agtgtggaga tcaatggctg gagcggagag aaaattgcgg ttgagcgaat
     6781 taaaggcaaa aaagtgactg ttgtgccgat tctgcgtgct ggcttaggta tgatggacgg
     6841 tgtgttagag catattccaa gtgccagaat tagtgtggtt gggatttatc gtgacgaaga
     6901 aaccttaaag cccgtgccgt atttctccaa actagccaac gatgttgatg agcgtttagc
     6961 cattatcacc gacccaatgc ttgcaaccgg tggctcaatg gtagcaacca ttgacctcct
     7021 gaaaaaagca ggctgtaagc agattaaagt gctagtgtta gttgccgctc cagaggggat
     7081 taaagtatta gaagccgccc acccagatgt tgaactctac accgcctcaa tcgatagtca
     7141 cttaaacgaa aacggctata tcattccagg cttaggcgat gcaggggata aaattttcgg
     7201 caccaagtaa catcaaaact aagtaacagc aaaacaagta aagctgattt aaacaagcgg
     7261 ccatttttca ctaaagattt gcaaatcttg gtagaaaaat gaccgcttgt aatttattga
     7321 ttagcaatct tcatcaacca attcttcggt tgtatcaatt gccggcgggt tgtcgtgtag
     7381 ccagttagcc aaacgcacat aatcggcaat ggtaaggttt tccgctcggg cggttaaatc
     7441 aacgcctaag gcgtccagtt gctccgcact aaacagggtt gaaagagcat tgcgtaaggt
     7501 tttacggcgt tggttaaagg cttgagtcgt gacccgattg agccaataca catcttttgc
     7561 cggataaggc agttggttat aaggcactaa acgcactacc gcagaatcga cttttggtgc
     7621 cggtttaaag gcggttggcg gcacttccag caccggaatt acttggcaat agtattgagc
     7681 cataatggtt aaacgcccgt atgctttact gtttggcgcg gcacataaac gtttcaccac
     7741 ctctttttgc aacataaagt gcatatcttg aattaagtcg tgaaaggtca gcaggtggaa
     7801 tatcaagggc gtagaaatgt tgtaaggtaa gttaccaaac acacgcaccg agtcttcgtc
     7861 taagttgagt tggttaaaat agtcacggaa attaaagcgt agggcatctt gctcaataat
     7921 ggtgagtttt tggtttaaaa acgggtggtg gcgtaaacgc tctgctaaat cacggtcaat
     7981 ttcaaccacc gtgagtttat ctaccaattc ggcaaccggc tcggttaatg ctcctaaacc
     8041 cggaccgatt tctaataaaa attgtccgtt tttcgggtta atggctgaaa ctatgctgtg
     8101 aataatgttc atatcgtgca aaaagttttg cccgaaacgc ttacgagcgg tatgacctaa
     8161 atgttttttg gaatttgtag aactcattgt tatccttttt gaaataagaa aagaaccccg
     8221 cattatgcga ggttcttaaa aattttaatt attgaccgac atattgaata ttggcggttt
     8281 ttctaagcgc ttttacccaa tctttagagg cttcttcggc ttgcttgttc accagttgct
     8341 gataagcacg ttggtggtaa gcatcttcgg ttctgtctcc gttacgagtg tcggtgactt
     8401 ttaaaatatg ccaaccaaat tgcgatttaa acggagcaga aatttggttt ggtttgattt
     8461 ttgatgcaac attcgcaaat gccggatcgt aaatttctaa gaagttaaaa cctaaatctc
     8521 caccgtctgc ccctgaggca taatcaacag aatgggtttt tgccgcttct tcaaagctga
     8581 ttttgcctga gttaatatca gtagttaagc tgctaagttt tgctttggct tgagcatcat
     8641 ttaaaatcgg gttggttttg agcaaaatat gactaatgcg atgctctttg ccagaaacgg
     8701 ttttcaattt gcctgctgct ttatctttcg ccattaactc tttcgccaga gcttgcactt
     8761 gctgtggtgc aacctgaatc gatttgctaa tgctgatatg gcgaacttgt tccattgcca
     8821 tttgttgagc aatattacgt ttgaattgtt caagtgtaat accttgataa tctaacgcat
     8881 ctaataactg accgtaagta atgccgtttt gaattgctac attttcaacc gcttggttta
     8941 ccgcagctgg gctgacttta acgccggctt ctttcattgc ctgttgcacc aacatatcat
     9001 caatcacttg atcaatagcc gcacgttgag cagtttctgt cgcctttttc ttgccaagca
     9061 cacgttgaac ctggctttgc ataatagggg tatcattcac taacgccacc actctttctt
     9121 caaatgcgtg ggcggtttgg gtaagactca ttgttgcaac ggcaacagca aataatgatt
     9181 tgactaattt catttttata acaatcctaa tggaggtaat taagcagtaa cttttcctta
     9241 gagataagtt tagcgaaaag gttcacttaa tttaagcact ttctttattg gcagcaggaa
     9301 ctaagaccac ttggttaatc ccatcatacg agagcgtttg cacctgaatt tgctcgtttt
     9361 tagccgttgg aatatttttt ccgacataat cggctcggat aggcaattcc cgatgacctc
     9421 tatcgacaaa aatcaccagt tcaattctgg cagctctgcc aaaatctaag agtgcatcaa
     9481 gtgccgcccg aatggttctg ccggtaaaca gaacatcatc aaccaaaatc acttttttac
     9541 cgttcagatt tagctgatta tcggctccca taaatacggg atcttgataa attaagtcta
     9601 ggtcatcacg gtagaacgta atatctaacg ccatataagg caagcgtgtt tgagctaaat
     9661 cttcaatgcg tttttggatt aactcggcaa tttcagctcc tcgacgtttg atgccgacaa
     9721 tcactacatc ttgcaaatca ccgtgttttt caataatttg atgtgaaata cgagatattg
     9781 tgcgctgaaa ttgctcggta tcaataatga ttttttctct cgccattcgc ttattaccat
     9841 tatagtgctt gaattttctt gatcacatta gtggtagaac agccgttttc aaagttcaat
     9901 actcgcacat cgccgccgtt tgcccatact tcttggctgc cggcaatctc ttccggcttg
     9961 taatcaccac cttttaccaa taaatcaggt aggatttcac tgattaaacg ttgtggtgta
    10021 tcttcatcaa aaggcacaac ccaatctaca gaggctaaac cagctaaaac tgccatacgg
    10081 gcagctaaat cattaatcgg gcgagcttcg ccttttaggc gttttaccga agcatcggta
    10141 ttgacggcta caattaatcg gtcgcctaat ttacgggcgt tttccaaata ggaaacgtga
    10201 ccggggtgaa gaatatcaaa gcaaccgttc gtcatcacga ttttttcgcc acgttttttc
    10261 gcttcttcca caatcgcttt taattcggct tcagaaacca cgccaaaacc ggtggcagtg
    10321 cgttggtgaa tcgcattttc cagctcaacc gggctgacgg ttgaagtccc taatttacct
    10381 acgactacac cggcggcagc attggctaaa tagcaggctt cttcataggc tctgccatcg
    10441 gcaatcgcag tggctaatac actgattacg gtatcgcctg caccggttac atcataaacc
    10501 tctttggctt gggtcggcag atgataaggc tcgtggttcg ggcgaagtaa ggtcattcct
    10561 ttttccgaac gggtaactaa tagtgcagat aaatcatagt cggcaatcag ttttaaccct
    10621 ttgctgacaa tctcatcctc atctttacaa tgcccaacca ccgcttcaaa ttccgacata
    10681 tttggtgtaa gcaatgttgc cccacgatag cgttcaaagt ctgtgccttt cgggtcgatc
    10741 agcaccggca ccttagcatt gcgggcaatt tggatcattt gttgcaccga ttccaatgtg
    10801 cctttgccgt aatccgagag aattaatgct ccgtaagcgg taatttcttg cgaaagtttt
    10861 gcaagtaggg cggtagaatc tacattgtga aaaccctctt caaaatccaa ccgcaataat
    10921 tgctgatggc gggaaagaat ccgcaatttt gtgatggttg ggtgcgaatt aatcaccaca
    10981 caatgatttt ggatctggtg ggaattaagt aatttatcta aagcacgccc ggcatcatca
    11041 tcgccaatta agccgtgtaa tgttaccggt acgccaaggc tggcgatgtt catcgccacg
    11101 tttgccgcac cgccggcacg ctcttcaata tcttgtactt tcaccaccgg cacaggggct
    11161 tcaggcgaaa ttcgattggt tgccccgaac cagtaacggt ctaacattac atcgccaagc
    11221 accagcactt tagcattatt aaattttgga gagtattgca tcatcatagt taatattctc
    11281 tgttaaatga tggcgcaagc gtccacgctt gtgccattat tagttttagc acaagcgtgg
    11341 acgcttgcgc tatcgttag
//
LOCUS       DANLZD010000089        11304 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.089, whole genome shotgun sequence.
ACCESSION   DANLZD010000089 DANLZD010000000
VERSION     DANLZD010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11304)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11304)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11304
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.089"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            119..1904
                     /locus_tag="PXE26_001689"
                     /pseudo
     CDS             119..1904
                     /locus_tag="PXE26_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249346.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate-specific subunit IIBC"
     gene            1984..3045
                     /locus_tag="PXE26_001690"
     CDS             1984..3045
                     /locus_tag="PXE26_001690"
                     /inference="COORDINATES: protein motif:HMM:NF012376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL5594257.1"
                     /translation="MKKILSTLFMLSAVSVAVAKEVNIKLLGTSDVHGRVVPWSYGAD
                     VEDKSGSFAQIATYVKEVRANHKNVLLFDIGDAIQDNQVEEFAKTLDKAKNNPVPKVL
                     NAMNYDIFILGNHEFNFGMPNLDAILKDINAKILTANFYHKDGKRYVEPTTIIERDGV
                     KLGIIGLTTPMSAIFEKDTGHLDAMKFTSPIEEAKAQIADLKAKGVDAIIVLAHMGIE
                     NENNIPDTGVADLVNAVDGIDVIIAGHMHKDVPSETIKNTLITEPHRYGTVVSEVDLA
                     FDVNDKGEVKLLSKTAKTVPVKKLASDPEIEKIYQPYHNELRALNNVKIGETAQDLIP
                     QGKITVYRLLSRKTPECPH"
     gene            3033..3497
                     /locus_tag="PXE26_001691"
     CDS             3033..3497
                     /locus_tag="PXE26_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HDL5594258.1"
                     /translation="MSSLIHDVQQHYSGADVVSFAFDYETVRLDKGDIKKKDIIYNYR
                     YAGGDVSMYELTGKQLKQYMEWSADYFDTIQAGDKDYRYNAVRGKSKYVTFDLFGGVS
                     YNIDLRNPSGSKIVDLKLANGSLITDDGKYKVGMNSYRFGQLTKKGGIWEGQ"
     gene            3528..3644
                     /locus_tag="PXE26_001692"
     CDS             3528..3644
                     /locus_tag="PXE26_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ser/Thr protein phosphatase"
                     /protein_id="HDL5594259.1"
                     /translation="MGAEKGTIQNMLIDYITNVKGGKIEGKSHNRWAIIGLN"
     gene            3660..4127
                     /locus_tag="PXE26_001693"
     CDS             3660..4127
                     /locus_tag="PXE26_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL5594260.1"
                     /translation="MNLKQSLIENNSILLNQSAANWEDAIKIGTDLLVKAGTIEPRYY
                     DNIVSKIKEMGPYIILAPGLAMPHARPEEGVIKTSFALVTFDTPIYFEGEDEPVHVML
                     TLAGSDSDQHMQGLVEITQVLDDPESDTGVDLDKIRRCKTAEEVYAVIDQALA"
     gene            4182..4862
                     /locus_tag="PXE26_001694"
     CDS             4182..4862
                     /locus_tag="PXE26_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HDL5594261.1"
                     /translation="MSKPLLQIALDSLSLEKAVADAKQAENQVEIIECGTILAFAEGM
                     KAVSTLRVLHPNHIIVCDLKTTDGGAILAKMAFEAGADWLTVSAAAHPATKAACKKVA
                     DEFNAAHPELKVKKEIQIEIYGNWTVEKDAKEWVELGVTQAIYHRSRDAELAGKGWTT
                     EDVELMKQLSDLGIELSITGGIVPEDIHLFKEIKNAKAFIAGRALVGEKGKQTAEAIR
                     VEIDKYWN"
     gene            complement(4930..6072)
                     /locus_tag="PXE26_001695"
     CDS             complement(4930..6072)
                     /locus_tag="PXE26_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HDL5594262.1"
                     /translation="MKIVIAPDSFKESLTALEVAQAIQQGFARVFPEAEYQLVPMADG
                     GEGSVQSLVDATHGSLQKISVIAPLANEVEGFFGLSGDQKTAFIEMAAASGLHLVPME
                     QRNPLVTTSYGTGQLIKAALDLGVEKIILGIGGSATNDGGVGMLQALGAKFLNAEQRE
                     IGFGGEALSQIQQIDLSGLDSRLKQVEFEVACDVDNPLCGERGASAIFGPQKGATPEM
                     VKMLDHALLHFAETVKSQLGIEIAEKAGAGAAGGMGGGLLLLPNVTLRSGVQIILEAT
                     DLAEKLADADLVVTGEGRMDAQSIAGKTPIGVAKVAKQFGKPVIAIVGSLKEDYPVVY
                     QHGIDAVFPIIRQVSNLEAVLKSGKENLISTAENVARLWKISALQE"
     gene            complement(6082..7461)
                     /locus_tag="PXE26_001696"
     CDS             complement(6082..7461)
                     /locus_tag="PXE26_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HDL5594263.1"
                     /translation="MSGIALILIFLVAIIIMIYMIAKWKVHPFLALMSISIALALVAG
                     LPLAKIPTIVGEGFSNTFKSIGIVIIFGAIIGTILEKTGAALKLADMVVKVVGQKRPE
                     LAMLIMGWVVGIPVFCDSGFVVLNPIREAIRKKILANPVGMAVALSAGLYASHVFIPP
                     TPGPIAAAGAVGLSHNLLLVIGMGFVVSIPVLIASYFFAKYVGKQVSVMEEAQADQVI
                     SQSYEDLIKQYGKLPSGFLSFAPIFMPIILMAIGSIAKIAGVSGDFGVFLQFVGNPII
                     ALAIGVIFAIFLLVSSGKMAEFDSLTNDTLKLVGPILFITAAGGVLGNVITQAGFVDY
                     IKQNAHIISTAGIFFPFLISAILKTAQGSSTVAIITTASIMGMFNAPDSLMNALGLTS
                     EMAAALTVMAIAAGSMCVSHANDSYYWVVTNFTKLTPQQGYRTQTTLTFIMGVVGMLT
                     VYLLSLILL"
     gene            complement(7583..8677)
                     /locus_tag="PXE26_001697"
     CDS             complement(7583..8677)
                     /locus_tag="PXE26_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5594264.1"
                     /translation="MKLNQAIADRIVKRTMQIIPNSVNVMDSEGVIIASGDVGRIGQR
                     HTGAVIALRNDQAVEIDENLAKQWCDEVKAGINLPLHYLGSTIGVVGISGQPQQVRQY
                     AQLVKMAAELIMQQAFELEQERWQRRYREEFVRALLKGSLSTAEIQQQAVFFGQDFAK
                     PLSVMVIKIHGSTAEKLQRLIDFFEHYFPSLLTAVIGLDKIALLNHLSNEKSLIRNAL
                     NKLNDPDISFKTVVGLAVENLSQTHISYQTACHTLNYAEQIQSRKQIIHFEDFKLPAL
                     LHSFSHSWEAKTLLSPFQALLVSDKKQVLLKSLRYYFFANCDLDHAAKKLFIHPNTLR
                     YRLEKIEQITGLSFNNIEQKFVLYLGAVLS"
     gene            complement(8781..9233)
                     /locus_tag="PXE26_001698"
     CDS             complement(8781..9233)
                     /locus_tag="PXE26_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HDL5594265.1"
                     /translation="MNLKAVAVSALAMSSVAMADIADVKPVVFESKFDFQTTVTTLTN
                     TLKEKGMTIFAEIDHQAAAKQAGLEMQPATVLVYGTPKAGTPLMVKDPMLALQLPLKV
                     LITEPNKGKVEVMLNRADQVVAHANTDYADVENNLAKAEKLIKATVAK"
     gene            complement(9254..10006)
                     /locus_tag="PXE26_001699"
     CDS             complement(9254..10006)
                     /locus_tag="PXE26_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HDL5594266.1"
                     /translation="MHFEKRSHWSGELGREMSFNVYGHAGKPVIVFPSSGGNENEYGN
                     FGMIEACRSFIERGLIKFYTPDSYDAESWLSKHKSGHDMALAHNAYDRYIIHELVPLI
                     RHESHWNGTMIATGCSMGAFHTVNFALRHPDLFDIAIALSGVYDARFFSGEFYGDKAV
                     YFNSPIDYVWGQNDDWFLDRYRQNHYVIAVGQGAWEEQHIEDTRRLQEAFNAKGIDAW
                     FDYWGFDIDHDWPTWRKQMPYFLGKLEEQGII"
     gene            complement(10017..11201)
                     /locus_tag="PXE26_001700"
     CDS             complement(10017..11201)
                     /locus_tag="PXE26_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HDL5594267.1"
                     /translation="MSRPLNFVMISPHFPTNFETFAIRLREAGFNTLGIADAPYESLS
                     ENLRHSLTEYYRVDNMEDYEQVYRAVAYFAHKYGRIDRIESHNEYWLELDAKLRTDFN
                     VFGYKSDDMLSIKTKAQMKEVFRKTGLKVAQGRVFKDDEDARKLAKQLKFPVIIKPNS
                     GVGASDTYKIKTAEELEAFFGYKTPTVEYIMEEFIDGDIITFDGLTDKEGNIVFYSSL
                     EYSEAVLDTVSKDGDMFYYVPCEISPKLVEMGKQCVKAFNVKERFFHFEFFRVKGSKK
                     EELLPLEINCRPPGGLTIDMWNYANDFDVFREFANIVKENKFYADIQHPWNVVYISRK
                     ANQNYVNSIEAVCEKFAGNIISVQSVPGVFAKVMGEQGILARTETMEQMREIAQFAQA
                     KQ"
BASE COUNT         3260 a         2594 c         2353 g         3097 t
ORIGIN      
        1 ctcgctcaca aataattaaa aataatcttt tttaatcttt ttctagcgtt tatcattaat
       61 tccgacaact tctctggagt tttttagttc tattaatctc tcaacaaaga ggccccctat
      121 ggacttttta accgaaattc tccttttctt aaaggatcaa gtgctgaata aagcaccctt
      181 cttactaggt atcgtagctt gcttaggtta cattcttctt aaaaaagaca cttctacgat
      241 tattaaaggc acaattaaaa caattgtcgg ttttatgatt gtacaagccg gttcaggttt
      301 cttagtaacc aactttaagc cggttattga tggcttagcc aaatatcacc aacttaccgg
      361 tgcagtaatt gacccttaca ccagtatgca atcgaccatt caaaccatgg gcgagaacta
      421 cgcttgggtt ggttatgccg taattggggc gctgttcctc aatattctat tagtggtgtt
      481 ccgccgttta accggtatcc gtaccattat gctcaccggt cacattatgt tccaacaagc
      541 aggcttggtt gcggtgttct atatgatcat cggagcgtca atgtgggaga ccattatcta
      601 cacctcagtg ttgatggctc tttattgggg tatttcgtct aatattatgt ataaaccaac
      661 ccaagcggta acaggcggtg caggcttctc aattggtcac caacaacaaa ttgcttcttg
      721 gattgcagtc aaactcgcac caaaacttgg cgataaagac gatactgtag ataaaatgaa
      781 attgcctaac tggctcaata ttttccacga cagtatttct gcaaccgcat tagtaatgac
      841 catcttcttt ggaatcatct tactttcatt cggtttagat aacctcaaag aacttgctgg
      901 caaaaccaac cagtttatgt acattcttga aatgggcttg aaatttgcgg tggcaattca
      961 aatcattgta accggcgtac gtatgtttgt agctgagctt tcagaagcct tcaaaggtat
     1021 tgctgaacgc ttaattccaa actcagtatt agcgattgac tgtgccgcta tctacgcttt
     1081 ctcgccaaat gcgatggtat tcggctttat gtggggggct atcggtcaat ttgggcttgc
     1141 ttgcagtagg ctcaccggtg cttattattc cgggctttat cccgatgttc ttctctaacg
     1201 caaccattgg tgtgtttgca aaccaatttg gtggttggaa agcagtaatg aaaatctgtt
     1261 ttgtgatggg tattattgaa gtgcttggct cagcttgggt tattcaaatg cttgcttcac
     1321 aaggcacaac ctttaacggt tggatgggta tggctgactg ggcattgttc ttcccaccaa
     1381 tcctacaagg tattatcagc attccgggct tcttctttgt aattgtggca gcagcaatgg
     1441 tttatatgtt cttcgcatct aaacaacttc gtgccgaaga agcagaagcg gcagctcgtg
     1501 gcattacact tgaacaatta gacggctacg gcttagatga agtaaaagca gaaccaaaag
     1561 cggaggcagt agtacaacaa gcggtcgaaa atgccgaaaa ttctgcaaac ccaatccgca
     1621 ttctagcggt gtgtggctct ggtcaaggct catcaatgat gatgaaaatg aagatcaaag
     1681 gctatctcga caaacgtggt attccgaata ttatggattc ctgtgcggta actgattaca
     1741 aaggcaaatt aagcgaggtt gatattattg tctccagcaa acatttagcc aacgaaatcg
     1801 aagtaccgga aggcaaagcg gtattaggtg tacaaaatat gctaaatcca aactcatttg
     1861 gtgatgaatt agttgagcta atcaatcagc ataatgcaaa ataagtaagt ttaggggtga
     1921 ataatcaccc ctatctatgc taaagattgt aaaaactcac ttcatcaaac gaggaattat
     1981 ccaatgaaaa aaatcttatc caccctgttt atgctctccg cggttagcgt tgccgttgcc
     2041 aaagaggtaa acattaaact acttggtacc tcagacgttc acggacgtgt tgtgccgtgg
     2101 agctacgggg cagacgtgga agacaaatcc ggctcattcg cccaaattgc aacctatgtc
     2161 aaagaggtgc gtgccaacca caaaaatgtg ttgctgtttg atattggcga tgcgattcaa
     2221 gacaaccaag tcgaagagtt cgctaaaacc ttagacaaag cgaaaaacaa tcccgtgccg
     2281 aaagtgctga atgcaatgaa ttacgacatc ttcattctcg gcaaccacga atttaacttc
     2341 ggaatgccga atttagatgc gattttaaaa gacatcaacg ccaaaattct cactgccaac
     2401 ttctatcaca aagacggcaa acgctacgtt gagccaacta ccatcattga acgtgatggc
     2461 gtaaaacttg ggattatcgg cttaaccacc ccaatgtcgg ctatttttga aaaagacacc
     2521 ggtcatttag acgcaatgaa gttcacttcg ccgattgaag aggcgaaagc ccaaattgcc
     2581 gatctcaaag ccaaaggcgt ggacgccatt attgtgctgg cacatatggg gattgagaac
     2641 gaaaacaaca ttcccgacac cggcgtggcg gatttagtga atgcagtgga cggtattgat
     2701 gtaattatcg ccggccatat gcataaagat gtgccgagtg aaactatcaa aaataccctg
     2761 attaccgaac cgcaccgcta cggcacagtg gtttccgaag ttgatcttgc ctttgatgtg
     2821 aatgacaaag gcgaagtgaa actactttct aaaaccgcca aaaccgtacc ggtgaagaaa
     2881 ctcgcaagcg atccggaaat cgaaaaaatt taccaaccat atcacaatga actgcgtgcc
     2941 ttaaacaacg tcaaaatcgg tgaaactgca caagatttaa tcccacaagg caaaatcacg
     3001 gtgtatcgat tgctttctcg caagacaccg gaatgtcctc attgatccac gatgtgcaac
     3061 aacattacag cggtgcagac gtagtgagtt ttgcatttga ctacgaaacc gtgcgtttag
     3121 acaaaggcga catcaagaaa aaagacatca tctacaacta ccgctatgcc ggtggcgatg
     3181 tgagcatgta tgagctaacc ggcaaacagc ttaaacagta tatggaatgg tcagcggatt
     3241 acttcgacac cattcaagcc ggtgacaaag actaccgcta caacgctgtg cggggtaaat
     3301 ctaaatacgt taccttcgac ctattcggcg gcgtaagcta caacatcgac ctacgcaatc
     3361 caagcggtag caaaattgtc gatctaaaac tggcaaacgg cagtctaatc accgatgacg
     3421 gcaaatacaa agtgggaatg aactcctacc gctttggtca gctcaccaaa aaaggcggca
     3481 tctgggaagg acagtaaatc cccgtgattt gggaatccaa agtcgccatg ggggctgaaa
     3541 aaggcacaat ccaaaatatg ctgattgatt acatcaccaa cgtcaaaggc ggaaaaatcg
     3601 aaggcaaatc gcataaccgc tgggcgatta tcggcttaaa ttaacgaaag ggaaacacta
     3661 tgaacttaaa acaatctctt attgaaaata actctatttt gctcaatcaa tcagcggcga
     3721 attgggaaga cgcaatcaaa atcggcactg atttattagt caaagccggt acgattgaac
     3781 cacgctatta cgataatatt gtaagcaaaa tcaaagagat ggggccttat attattcttg
     3841 caccgggctt ggcaatgcct cacgcccgtc cggaagaagg tgtgattaaa acctctttcg
     3901 ctttagtgac ttttgacacc ccgatttatt ttgagggcga agatgagccg gttcacgtta
     3961 tgctaaccct tgcagggagt gactctgatc agcatatgca aggcttggta gaaatcaccc
     4021 aagtgctaga tgacccagag agcgacacag gtgttgattt agataaaatc cgccgctgta
     4081 aaacggctga agaagtgtat gcagtaatcg atcaggcatt agcctaatat tctacaagcg
     4141 gttcaaaaac atcaatattt tgcaaataga ggaatacaat tatgtccaaa ccattattac
     4201 aaattgccct tgattctctt tcactggaaa aagcggtggc ggatgcaaaa caagcagaaa
     4261 accaagtcga aattattgaa tgcggtacta ttcttgcttt tgctgagggt atgaaagccg
     4321 tttccacctt gcgtgtattg cacccaaatc acattattgt gtgcgactta aaaaccaccg
     4381 atggcggtgc aattttagct aaaatggcat ttgaagccgg tgccgactgg ctcacggttt
     4441 cggctgcggc tcaccctgca accaaagcgg cttgcaaaaa agtggcggac gaatttaacg
     4501 ctgctcaccc ggagctaaaa gtgaaaaaag agattcaaat tgaaatctac ggcaactgga
     4561 cggtggaaaa agatgccaaa gagtgggtag aattaggggt aacccaagcg atttaccacc
     4621 gctcccgtga tgcggaacta gcaggtaaag gttggacaac ggaagatgtt gagttaatga
     4681 aacagctttc tgacttaggc attgaattat ctatcaccgg cggtatcgta ccggaagata
     4741 ttcacctgtt caaagagatc aaaaacgcca aagcctttat tgcaggccgt gctttagtcg
     4801 gtgaaaaagg caaacaaact gccgaagcca ttcgtgtgga gattgataaa tactggaact
     4861 aatccggcat tgaaacccaa taaaaatggc gttctctcaa ccggaacgcc attttttatc
     4921 tcattttttc tattcttgca aggccgatat tttccacaat ctcgctacat tttcggcagt
     4981 tgaaatcagg ttctctttgc ctgattttaa caccgcttct aaattgctga cctgtcgaat
     5041 aatcggaaat accgcatcaa tgccgtgttg gtacaccaca gggtaatctt ctttcaatga
     5101 gccaactatc gcaatcaccg gcttgccaaa ctgcttagcg actttcgcca ccccaatcgg
     5161 ggttttaccg gcgatagatt gagcgtccat tcgcccttcc cctgtcacca ccaaatccgc
     5221 atcggcaagt ttctcagcaa gatcggttgc ctcaagaata atttgcacgc cggaacgtaa
     5281 tgttacgtta ggcagtagca gtaaaccacc gcccattcca ccggctgcac cggcaccggc
     5341 tttctcggca atctcaatgc ctaattggga ttttacggtt tcggcaaaat gcaacagggc
     5401 gtggtcgagc attttaacca tttccggtgt agctcctttc tgtggcccaa aaattgccga
     5461 agcccctcgc tcgccacaca gcggattatc gacatcgcaa gcaacctcaa attccacttg
     5521 ctttaagcgt gaatccaaac cgcttaaatc aatctgctga atttggctta atgcctcgcc
     5581 accaaagccg atttcccgct gttcggcatt tagaaatttc gctcctaagg cttgtagcat
     5641 tccgacaccg ccatcgttag tcgcactgcc gccaatgccg agaatgattt tttccacccc
     5701 taaatctaag gcggctttaa ttaactgccc cgtgccgtag ctggtggtaa ccagcggatt
     5761 tcgttgctcc attggcacta aatgcaagcc acttgccgcc gccatttcaa taaaggcggt
     5821 tttttgatcc cccgacaagc caaaaaagcc ctccacctca tttgcaagcg gtgcaattac
     5881 gctgattttt tgcaaactgc cgtgagtggc atcaaccagc gactgtaccg agccttcgcc
     5941 accgtctgcc atcggtacga gctgatactc cgcctcaggg aaaacacggg caaaaccctg
     6001 ttgaattgct tgagccactt ctaatgcggt caaactctct ttaaatgaat ccggtgcaat
     6061 cacaattttc atcgtcaatc cttagagtaa aatcaatgaa agcagataaa ccgtgagcat
     6121 acccaccaca cccataatga aagttagggt agtttgcgta cgatagcctt gttgcggagt
     6181 cagtttagta aagtttgtta ccacccagta gtagctgtca ttggcgtggg aaacgcacat
     6241 tgagccagcc gcaatcgcca ttacggttaa ggctgccgcc atttcactgg ttagccctaa
     6301 ggcgttcatt aatgagtccg gtgcgttgaa cattcccata atggaggcgg tggtgataat
     6361 tgccaccgtt gagctgcctt gtgcggtttt taaaattgcc gaaatcagga acgggaagaa
     6421 aatccctgct gtactgataa tatgagcgtt ttgcttgatg taatccacaa agccggcttg
     6481 agtaatcacg ttacctagca caccaccggc ggcggtaata aagagaattg ggccgactaa
     6541 tttcagggta tcattggtta agctgtcaaa ttccgccatt ttaccgcttg aaaccagtag
     6601 gaaaatagcg aagatcaccc caattgctaa cgcaataatc gggttgccga caaattgtag
     6661 gaatacgccg aaatcgccac ttacaccggc aattttggca atcgagccga tagccattaa
     6721 gataatcggc ataaaaatcg gggcaaagct taaaaaccca cttggtaatt tgccgtattg
     6781 tttgatcaga tcttcatagc tttggctgat tacttgatcc gcttgagctt cttccatcac
     6841 gctgacttgt ttgccaacat atttggcaaa gaagtaactg gcaatcaaca caggaatcga
     6901 aaccacaaag cccattccga tcacaagcag gagattatgg cttaaaccaa cagcaccggc
     6961 tgctgcaatc gggcccggtg tcggaggaat aaagacgtgg gaggcatata aaccggcact
     7021 taacgccacc gccattccca ccggattggc aagaattttt ttgcgaatag cttcacgaat
     7081 cgggtttaac accacaaagc cgctatcaca gaacactggg ataccaacca cccagcccat
     7141 aatcaacatt gccagttcag ggcgtttttg ccccaccact tttaccacca tatcggctaa
     7201 tttgagggct gcaccggttt tttctaaaat cgtgccgata atcgccccaa aaataatcac
     7261 gataccgata cttttgaagg tattactaaa accttcgccc acaatagttg gaattttggc
     7321 aagcggtaaa cctgccacta atgcaagggc tatcgaaatc gacattaagg ctaagaacgg
     7381 gtgaactttc cacttcgcaa tcatataaat cattatgatg atagcgacca gaaagatcag
     7441 aataagtgca atacctgaca taataagtct cctcattgta gaaaaatgaa cttattattc
     7501 ggtatttatt gctaaaaaga tttagataaa tttgcaaaaa atttgttaaa aacgaccgct
     7561 tgtttgtata tttttacaat ttttacgaca gaaccgctcc aagatacagc acaaattttt
     7621 gctctatgtt attgaaagat aaaccagtta tctgctcaat cttctctaaa cggtaacgta
     7681 gcgtatttgg gtgaataaac aattttttgg cagcgtgatc cagatcacaa tttgcgaaaa
     7741 aatagtaacg cagacttttc agtaacacct gttttttatc ggaaaccagt aaagcttgga
     7801 acggcgagag caaggttttc gcttcccaag agtggctgaa actgtgcaag agggccggca
     7861 gtttaaaatc ttcaaaatga ataatctgct tacggctttg gatctgctcg gcataattga
     7921 gggtatggca ggcggtttgg taggaaatat gggtttgcga taaattttcg accgccagcc
     7981 caaccaccgt tttgaaggaa atatccggat cgttaagttt gtttagtgca ttgcggatta
     8041 acgatttttc gttggataaa tgattcagca aggcaatttt atctaaccca atcacggcgg
     8101 tgagtaggct cgggaaataa tgttcgaaaa aatcaatcag gcgttggagt ttttccgcag
     8161 tagagccgtg aattttaatc accatcaccg acagcggttt tgcaaaatct tgcccgaaaa
     8221 agaccgcttg ttgctggatt tctgctgtgc ttaggctacc tttgagcaag gcccgcacaa
     8281 actcttcccg atagcggcgt tgccaacgtt cctgttccaa ctcaaacgct tgctgcataa
     8341 tcagctccgc cgccattttc accaattgag catattgccg aacttgttgt ggctgccctg
     8401 aaatccccac tacaccaatg gttgagccta aatagtgaag cggtaagtta atgcccgctt
     8461 tcacttcatc gcaccactgt tttgcaagat tttcatcaat ttcgaccgct tgatcgttgc
     8521 gtaacgcaat caccgctcct gtgtgtcgtt gcccgatacg accgacatcg ccggaagcaa
     8581 taatcacccc ttcactatcc atcacattga cggagttggg aataatctgc atcgtgcgct
     8641 tgacgatgcg gtcggcaatc gcttggttga gtttcattat atgattccta ctcattccca
     8701 atactatgaa aaatccctct ttcgagggat ttgcaaatta tctacgcttc cacttcctga
     8761 gaatagatca tagcgtgaag ttattttgcc acagtcgctt taattaattt ttccgctttg
     8821 gcaaggttgt tttctacatc agcataatcg gtattagcgt gagccaccac ttgatcggca
     8881 cgatttaaca ttacttcgac cttgcccttg ttcggttcgg taattaacac ttttaacggt
     8941 aattgcaacg ctaacatcgg atctttcacc attaatggcg taccggcttt cggtgtgccg
     9001 taaaccaata cggttgccgg ttgcatttct aagccggctt gttttgccgc cgcttggtga
     9061 tcgatttcgg caaaaatcgt cattcctttt tcttttaagg tgttggttaa agttgtgact
     9121 gtagtttgga aatcaaattt actttcaaat accaccggtt tgacatcggc aatatctgcc
     9181 attgccacgc tgctcattgc taatgcagaa actgcgactg cttttaagtt catttctttt
     9241 ctcctcaaat agattaaata atcccttgtt cttccaactt gcctaagaaa taaggcatct
     9301 gtttacgcca agtcggccag tcatggtcaa tatcaaagcc ccagtagtca aaccaagcat
     9361 cgatcccttt tgcgttaaaa gcctcttgta atcggcgggt gtcttcaata tgctgttctt
     9421 cccacgcacc ttgtccgact gcaatcacat agtgattttg gcggtagcgg tctaagaacc
     9481 aatcgtcatt ttgaccccat acataatcaa tcggcgagtt aaaataaacc gctttatcgc
     9541 cataaaactc accactgaaa aagcgagcgt cataaacacc gcttaaggcg atggcaatat
     9601 caaacagatc cggatgacgt aaggcaaagt ttaccgtatg gaaagccccc atactacaac
     9661 cggtggcaat catcgtgccg ttccagtgcg attcatggcg gattaacggc actagctcgt
     9721 gaataatata acggtcgtaa gcattatgag ctaatgccat atcgtgtccg gatttatgtt
     9781 tagataacca agattccgca tcgtaagaat caggcgtgta aaatttgatt aagccacgtt
     9841 caataaagga acggcaagcc tcaatcattc caaaattacc atactcgttt tcattgccgc
     9901 cggaggaagg gaaaacaata accggtttac ctgcgtgtcc gtaaacgttg aacgacattt
     9961 cacgacctaa ttctccactc cagtggcttc ttttttcaaa atgcatactt cacctcttac
    10021 tgtttagctt gtgcaaattg tgcaatttca cgcatttgct ccattgtttc ggtacgggct
    10081 aaaatgcctt gttcgcccat cactttggca aatacgcccg gtacgctttg cacgctgata
    10141 atattgccgg caaatttctc acaaacagct tcaatcgaat tcacataatt ttggtttgcc
    10201 ttgcgggaaa tataaaccac gttccaaggg tgctgaatat cggcatagaa tttgttttct
    10261 ttcacaatat tggcaaattc acggaacaca tcgaaatcgt tggcgtagtt ccacatatca
    10321 atagttaagc cacccggcgg acggcagttg atttcgagtg gtaacaactc ttcttttttg
    10381 ctccctttaa cacggaagaa ctcaaaatgg aaaaaacgct cttttacgtt aaaggctttc
    10441 acacattgtt tgcccatttc cactaatttt ggcgaaattt cacatgggac atagtagaac
    10501 atatcgccat cttttgaaac ggtatctaat accgcttctg aatattcaag gctggagtag
    10561 aaaacgatat tgccctcttt atcggttaaa ccgtcaaagg taataatatc gccgtcaata
    10621 aactcttcca taatatattc aaccgttggc gttttataac cgaagaaagc ttctaactct
    10681 tccgcagttt tgattttgta agtatcgctt gccccaaccc ctgaatttgg cttgataatc
    10741 accgggaatt taagctgttt tgctaatttg cgggcatctt catcatcttt aaatactcgc
    10801 ccttgtgcca ctttcaagcc ggttttgcgg aatacctctt tcatttgggc tttggtttta
    10861 attgagagca tatcatcgct cttataacca aacacattga aatcggtacg caatttcgca
    10921 tctaactcca gccaatattc attgtgcgat tcaatgcggt caattcgccc gtatttatgg
    10981 gcaaagtacg cgaccgcacg ataaacttgt tcgtaatctt ccatattatc tacacgataa
    11041 tattcagtca gggaatgacg cagattttcg ctcaatgatt cataaggggc atctgcaatt
    11101 cccaatgtat taaaaccggc ttcacgcaaa cgaatggcaa aggtttcaaa gttcgttggg
    11161 aagtgcgggg aaatcatcac aaaattaagt ggtctagaca tagttcttcc tttataaagt
    11221 ttgcatatta ttaaaatgat tagaatagat tttaggctaa atttattaat tttcaaaatg
    11281 tattcacaca agcaataatt ttta
//
LOCUS       DANLZD010000090        11014 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.090, whole genome shotgun sequence.
ACCESSION   DANLZD010000090 DANLZD010000000
VERSION     DANLZD010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11014)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11014)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11014
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.090"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(47..1336)
                     /locus_tag="PXE26_001701"
     CDS             complement(47..1336)
                     /locus_tag="PXE26_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HDL5594268.1"
                     /translation="MDSIPLSSLFITLAILLVLSAFFSGSETGLMSLNRYKMRHLAEQ
                     GHKGAKLAEKLLARTDVLLSLILICNNLVNIAASAIATMIGMQLSGEAGVAIATGLLT
                     FVMLVFSEILPKTVAAIYPEKVGFFASFVLTPLKKLLSPIVFLMNLIIAGLMKLLRIQ
                     QKDKQGLSSEELRSVVLDAGKFIPAEHREMLVSILDMEKVTVDDIMVPRNDISGIDID
                     DDWKAIMRQLNHAPHARVIIYKGDMDNNIVGILRVREAFRLMLEKNEFTKEMLLRATD
                     EVYFIPEGTPLTTQLMNFKANKERIGLVVDEYGDIKGLVTLEDILEEIVGEFTTSSAP
                     TLEQEVQQQSDGTVIIEGSANLRDLNKLFDWDLPLEEARTFNGLILEHLEKIPDEGME
                     FELYNLKVMILEVSENMVKQAKVEHLSPKIEKEQDSA"
     gene            complement(1460..2257)
                     /gene="ccsA"
                     /locus_tag="PXE26_001702"
     CDS             complement(1460..2257)
                     /gene="ccsA"
                     /locus_tag="PXE26_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HDL5594269.1"
                     /translation="MLLPLLSIVAYALALLWVAPTLVNLENAATVNKKPNMMLVFGFG
                     LLATILHFSVLYNELFLIEGQNFTVTNVISLMSFIMAACVTLALLKWKTVWFPLIIVY
                     SFAICSVGVAGFVKGSFIRNVQENAGLLFHLGIALFSYALFFLALIYAFQLKWLDRKL
                     KSKTMFFCQILPPLMTVERHFFTLTLAAQAMLTLTLFSGVVYLHNFFEPEHIHKAIFS
                     FLAWLVYSIQLLGQWKLHWRGKRVLIYSISGMMLLTIGYFGSRLIVN"
     gene            2473..2997
                     /gene="yceD"
                     /locus_tag="PXE26_001703"
     CDS             2473..2997
                     /gene="yceD"
                     /locus_tag="PXE26_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA accumulation protein YceD"
                     /protein_id="HDL5594270.1"
                     /translation="MQKVKLPLTIDPYKDAQRRVDYEGYISGKLLTRLGESVCNVQSD
                     AQVTLSLYVDPQRLTVIKGTAKVDVEFDCQRCGDPFTQTLDCSFVFSPVSNMDQADIL
                     PEIYEPIEVNEFGEVNLLDMIEDEFILELPLVPMHSEEHCEVSVSEQVFGELPEELVQ
                     KPNPFAVLANLKKN"
     gene            3014..3184
                     /gene="rpmF"
                     /locus_tag="PXE26_001704"
     CDS             3014..3184
                     /gene="rpmF"
                     /locus_tag="PXE26_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006231206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HDL5594271.1"
                     /translation="MAVQQNKKSRSRRDMRRSHDALTTAAVSVDKTSGETHFRHHVTA
                     DGYYRGRKVINK"
     gene            3203..4225
                     /gene="plsX"
                     /locus_tag="PXE26_001705"
     CDS             3203..4225
                     /gene="plsX"
                     /locus_tag="PXE26_001705"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HDL5594272.1"
                     /translation="MVDITLAVDVMGGDFGPRVTIPALEKALKQNPSLSFLLFGDEHQ
                     IAPLLQKHTLLNHPKIQIHHTEQVIEADVPFTTAIRQSKNSSMRLAIEAVKEGKAQGC
                     VSGGNTGALMGLAKLLIEPLPNIERPALTSLIPTLNGKSSVMLDLGANIEVSNHQLQQ
                     FAEMGNLFAQVMLDLVYPRLSLLNIGTEENKGTAQLQAVHQLLKNRQDLNYTGFIESD
                     KLTSYLTDVIICDGYTGNIALKALEGAAKNIISLFKKEKADSNICRNTKRYLLKAMFY
                     RYYRKLQQINPDRHNGATLLGLSKVVVKSHGGANINAFYYAIDYAVQQIQGDIPNKIL
                     EGLTQK"
     gene            complement(4322..5605)
                     /gene="hisD"
                     /locus_tag="PXE26_001706"
     CDS             complement(4322..5605)
                     /gene="hisD"
                     /locus_tag="PXE26_001706"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HDL5594273.1"
                     /translation="MQTLIWNNLTETEQQQYLARPAQVVGESIKAAVNEIKANVIANG
                     DKALFELAEKFDKVKLESLVVSEQQIQQAQSRISPELKQAIQNAKANIEAFHKAQQNQ
                     EVDIETQPGVCCQVITRPINAVGLYIPGGSAPLFSTVLMLAVPAKIAGCNKIVLCSPP
                     PIADEILYTAHLCGVETIYAVGGAQAIIAMANGTQTVAKVDKIFGPGNAFVTEAKRQV
                     VQEGTAIDMPAGPSEVLVIADEFADPAFVASDLLSQAEHGADSQVILVTPSESLARAV
                     DEELEKQVAVLPRAETARKALAHSRTFIAENLQQAVEISNKYAPEHLIVQTENARSLL
                     ADLDNAGSIFLGAYSPESMGDYASGTNHVLPTYGYTKTYSSLGLADFSKRMTVQELTP
                     QGFLALAETVERMASAELLDAHRNAVSLRVAKLKG"
     gene            complement(5617..6516)
                     /gene="hisG"
                     /locus_tag="PXE26_001707"
     CDS             complement(5617..6516)
                     /gene="hisG"
                     /locus_tag="PXE26_001707"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HDL5594274.1"
                     /translation="MTTQNRLRIAMQKKGRLSQECSELLKQCGVKIIWNDQRLIAYSE
                     NMPIEILRVRDDDIPGLVFDGVVDLGIIGENVLEEVELGRLSAGENVAYKKLRQLDFG
                     GCRLSLAIDRDKNYNNIKDLEDAVIATSYPNLLKRYMKEQNVPFKSILLTGSVEVAPS
                     AGIANAICDLVSSGATLEANGLKEVEVIYRSTACLIQRQEPLSAEKQALVDKLLTRIQ
                     GVQQANESKYIMLHAPKDKLAEITALLPGVENPTILPLANDQTRVAMHVVSQENLFWE
                     TMEQLKEMGASSVLVLPIEKMLA"
     misc_feature    complement(6549..6676)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            6875..7732
                     /locus_tag="PXE26_001708"
     CDS             6875..7732
                     /locus_tag="PXE26_001708"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HDL5594275.1"
                     /translation="MQISLKKIYSGKVRDLYEIDEKRMLMVATDRLSAFDVILDDPIP
                     RKGEILTQISNFWFNKLAHIMPNHFTGDSVFDVLPQEEAEAIQHRAVVCKRLIPVKIE
                     SIVRGYLTGSGLKDYQQTGTICGLTLPEGLVEASKLPQPIFTPSSKAEVGDHDINISY
                     EECERQIGQELAAKVRDAALKLYTEAANYALTKGIIICDTKFEFGLDENGELTLMDEV
                     LTPDSSRFWSVETYREGTNPPSFDKQFVRDWLENSGWNKQPPAPKIPAEVIEKTVAKY
                     QEALDLLTK"
     gene            complement(7873..9354)
                     /gene="ilvC"
                     /locus_tag="PXE26_001709"
     CDS             complement(7873..9354)
                     /gene="ilvC"
                     /locus_tag="PXE26_001709"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HDL5594276.1"
                     /translation="MANYFNTLNLRQKLDQLGRCRFMDRDEFADGCNFLKGKKIVIVG
                     CGAQGLNQGLNMRDSGLDIAYALRAEAIAEKRASFKRASENGFVVGTYEQLIPEADLV
                     INLTPDKQHSKVVADVMPLMKQGAAFGYSHGFNIVEEGEQIRPDLTVVMTAPKCPGTE
                     VREEYKRGFGVPTLIAVHPENDPKGEGLAIAKAWASATGGDRAGVLESSFVAEVKSDL
                     MGEQTILCGMLQAGSIVCYDKLVSEGKDPAYAGKLIQYGWETITEALKQGGITLMMDR
                     LSNSAKLRAFELSEQIKEELAFLFEKHMDDIISGEFSSTMMADWANGDANLLKWREET
                     GKTAFENAPQADGIKISEQEYFDNGVLMVAMVKAGVELAFDTMVSAGIYEESAYYESL
                     HELPLIANTIARKRLYEMNVVISDTAEYGNYLFSHVATPILAEKIIPTLEKGDLGEPT
                     PAVEIDNVTLRDVNDAIRNHPIELIGQELRGYMTDMKRISSQG"
     gene            9576..10811
                     /locus_tag="PXE26_001710"
     CDS             9576..10811
                     /locus_tag="PXE26_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="paraquat-inducible protein A"
                     /protein_id="HDL5594277.1"
                     /translation="MKINRIILQSCSECGQQVRVPLTSNGNAVCPVCHNILRKSNTWS
                     LHRSAFLALAILILLPFALTFPLMSIDLLGIKINATVWDGIWKMATEGYPYTAFMVLV
                     CAVIMPIAFVLLILTIQLQRIIRQRPRYTLIFLTKIKEWVMLDVYLVALAVAAFKIRD
                     YADLQFDINLIAFVLVTLLNTLLFIKTEPKQAWERFYPEYHALPFDHPSNPTLCPTCE
                     YCFDETILDLKGRQRCPRCESNLSISDNVKIQRVWACLIAGTIMMIPANIFPISTTEL
                     AGQVSADSLMSGVLLFMEMGSYTVAAIVFIASIAVPVSKITIIFYLLLAIHYKWKHPI
                     HWQMKLLHYVHFVGRWSMLDLFVLSLMMSLLERGQILSFSVGEAAFYFGAAVFLTMFA
                     SANLDSRMLWKIHTVQKTS"
BASE COUNT         3276 a         2459 c         2077 g         3202 t
ORIGIN      
        1 attatttgta caaataatgt gttatttact ttcttttttc ttaaaattag gctgaatctt
       61 gctctttttc aattttcggt gaaagatgtt caactttcgc ttgtttaacc atattttcac
      121 tcacttcaag aatcatcact ttcaagttgt agagttcaaa ttccattcct tcatcaggaa
      181 ttttttctaa atgctctaaa atcaagccgt taaaggttct ggcttcctca agcggtaaat
      241 cccaatcaaa tagtttgttc agatcacgca ggttggctga gccttcaata atcaccgtac
      301 catctgattg ttgctgaact tcttgctcaa gggtcggtgc tgatgaagtc gtaaattcac
      361 ccacaatttc ttctaaaata tcttcaagag tgactagccc tttaatatca ccatactcat
      421 caaccactaa accaatacgc tctttattcg ctttaaagtt cattaattgt gtagtgagtg
      481 gtgtgccttc aggaataaaa tagacttcat ctgttgcacg cagtagcatt tctttggtaa
      541 attcgttttt ctccaacatt aaacgaaagg cttcacgcac ccgcaaaatc ccaacaatat
      601 tgttgtccat atcccctttg tagataatca cccgagcgtg aggggcgtga ttaagctgac
      661 gcataatcgc tttccagtca tcatcaatat caatgccgct gatgtcgttg cgaggcacca
      721 taatgtcatc aaccgtcact ttttccatat ctaaaataga gaccaacatt tcacggtgtt
      781 cggcaggaat aaatttaccg gcatcaagca ctacactacg cagctcttcg gagcttaagc
      841 cttgtttatc tttttgttga atccgcaata atttcatcag cccggcaata atcaaattca
      901 ttaaaaatac aatcgggctg agtaattttt taagcggtgt tagcacaaag ctggcgaaaa
      961 aaccgacttt ttcagggtaa attgccgcta ctgttttagg taggatttcc gaaaaaacca
     1021 acattacaaa agttagcaaa ccggttgcaa ttgccacacc ggcttcaccg gataactgca
     1081 taccgatcat cgttgcaatc gcagaggcgg caatgttgac taagttatta caaattaaga
     1141 taaggctaag tagcacatcg gtgcgtgcca agagtttttc cgccagtttc gcccctttat
     1201 gcccttgctc ggcaaggtga cgcattttgt agcggtttaa agacatcaag ccggtttccg
     1261 agcctgaaaa aaatgcagag agtactaaaa gaatagctaa ggtaataaat aaactactca
     1321 ggggaatact gtccaaaatt caattcctat gtaaattaat cataaaaggt agcgtaacac
     1381 taaaagcgtt gtcactacct cactttgtcg gttcagccga cttgcaaaaa attttgcttt
     1441 tttgaccgct tgtagatcat taattgacga tcaaacgact accgaaatag ccgatggtga
     1501 gcaacatcat acccgaaatc gaataaataa gcacccgttt tccacgccaa tgtaatttcc
     1561 actgtccaag taactgaatg ctataaacaa gccaagctaa aaaggagaaa attgctttat
     1621 gaatatgctc cggctcgaaa aagttatgca aataaaccac accggaaaat aaagtgagcg
     1681 tcagcatagc ttgtgcagct aaggttaaag taaagaaatg gcgttcaacc gtcattagcg
     1741 gtggtagaat ctggcaaaag aacattgttt tgctctttag ttttctatcc agccatttga
     1801 gttgaaaagc ataaattaat gctaaaaaga agagagcata agaaaataat gcaatcccta
     1861 aatggaaaag cagtcccgca ttttcttgca cattacggat aaaactacct tttacaaatc
     1921 cagccacccc cacactacaa atggcgaaag agtacacaat aattaaagga aaccaaaccg
     1981 ttttccattt taacaacgca agtgtgacac aagccgccat aatgaaactc atcaaagaga
     2041 ttacatttgt taccgtaaaa ttctgccctt cgattaaaaa taattcatta tataacacag
     2101 aaaaatgcaa aatcgtggca agtaacccaa acccaaagac taacatcata ttaggctttt
     2161 tattaactgt tgcggcattt tctaaattca ctagagtagg ggcaacccaa agtagcgcta
     2221 gagcgtaagc aacaatggat aaaagaggaa gtaacatatt gtctcgaatc tcgtcaaata
     2281 agaataacta tcagaatttt aatcaaaagt aaccgtttta gctagttttt gctgttgcta
     2341 gatcaaaaat tatcctaaaa aatgtgcttt tcgccttaaa ttgaacccta ccttttctcg
     2401 gtaagattat ctcactgaaa acaataattt tcctttgact aatttgcttt ctatctgtaa
     2461 tatgcacacc ctatgcaaaa ggtaaaacta ccccttacga ttgaccctta caaagatgct
     2521 cagcgtcgcg ttgattatga aggctacatt tcaggtaaac ttctaacacg cttgggtgaa
     2581 tcagtatgta atgtgcaaag tgatgcacaa gtcactctct cgttatatgt cgatccacaa
     2641 cgcctaactg tgattaaagg cacagcaaaa gtagatgtgg aatttgattg ccaacgatgt
     2701 ggtgacccgt ttacacaaac gctcgactgt tcatttgttt tcagtccggt gtctaacatg
     2761 gatcaggcgg acatcttgcc cgaaatttat gaacctatcg aagtaaacga gttcggtgaa
     2821 gtaaatttac tagatatgat tgaagatgaa tttattcttg aattacctct agtcccgatg
     2881 catagtgaag aacactgtga agtgtccgta agtgaacagg tatttggcga gttgccggaa
     2941 gaactggtac aaaaaccaaa cccgttcgca gtattagcta atttaaagaa aaactagatc
     3001 taggagaaag cccgtggctg ttcaacaaaa taagaaatct cgttcacgtc gtgatatgcg
     3061 tcgttcacac gatgcattaa caactgcagc agtttcagta gataaaacca gtggtgaaac
     3121 tcactttcgc caccacgtaa ctgcagacgg ttactaccgt ggtcgtaaag taatcaacaa
     3181 gtaattcctt tcgaggttta tcttggttga tatcactctt gcagtagatg tgatgggcgg
     3241 ggactttggt ccccgcgtta ctattcctgc actggaaaaa gccttaaaac aaaatccaag
     3301 cctttctttt ttattatttg gtgatgaaca ccaaatagcc cctttattac aaaaacacac
     3361 actactcaac caccccaaaa tccaaattca tcataccgaa caagtgattg aagctgatgt
     3421 tccgttcact actgcaatcc gccaaagcaa aaacagctct atgcggttag cgattgaggc
     3481 agtaaaagag ggcaaagcac aaggttgtgt tagtggcggt aacactggtg cgttaatggg
     3541 attggcaaaa ttattgattg aaccattacc aaatattgaa cgccctgcac tcacttcgct
     3601 aattcctacc ctcaacggca aatccagcgt aatgttagat ttaggggcaa atattgaagt
     3661 aagcaatcac cagctacaac aatttgcaga aatgggaaac ctgtttgctc aagtaatgct
     3721 tgatttagtt taccctcgcc tgtctttatt gaatattggt acagaagaaa ataaaggcac
     3781 ggcacaactt caggcagtgc atcaactgct gaaaaacaga caagacttaa attacaccgg
     3841 ctttattgaa agcgataaat taaccagcta tctcactgat gtgattattt gtgacggcta
     3901 caccggcaat atcgcgttaa aagcgttgga aggggcagct aaaaatatta tttctctctt
     3961 taaaaaagag aaagccgatt ccaatatttg ccgtaacacc aaacgatatt tactgaaagc
     4021 gatgttctac cgttactacc gcaaattgca acaaattaac cctgaccgcc ataacggtgc
     4081 gaccttgctc ggcttatcta aagtagtcgt gaaaagccac ggcggggcaa atatcaatgc
     4141 cttttattac gctattgatt atgcggtgca acaaattcaa ggcgacattc caaataaaat
     4201 cctagagggt ttaacccaaa aataagcgaa ctcaactgtt cgcttatttt catttcttgt
     4261 ttcacttaaa gatacaagcg gtcaaatttg caaaaaaatt tacccattca accgcttgtg
     4321 tttagccttt taattttgcc actcgtaaac taaccgcatt gcggtgtgca tctagcaatt
     4381 ctgcacttgc cattcgttcc accgtttcgg ccaaggctag aaagccttgt ggtgtcagct
     4441 cctgcaccgt cattcgcttg ctaaaatcag ctaaacctaa gctcgaatag gttttagtgt
     4501 agccgtaagt cggtaaaacg tggttagtgc cgctagcata atcccccata ctttccggcg
     4561 aatacgcccc taagaaaatc gagccggcat tatctaaatc cgccaacaac gagcgagcat
     4621 tttcagtttg cacaattaaa tgctcgggtg catatttatt actaatttcg accgcttgtt
     4681 gcaggttttc cgcaataaaa gtgcgactgt gagccaatgc tttacgggca gtttcggcac
     4741 gaggtaaaac cgccacctgc ttttctaatt cttcatcgac tgcccttgcc aagctctcac
     4801 ttggtgtgac taaaatcact tgggaatcgg ctccatgttc tgcttgagag agtaaatcgc
     4861 tcgccacaaa tgcagggtca gcaaactcat cggcaatcac caacacttcc gacgggcctg
     4921 ccggcatatc aatcgccgtg ccttcttgca caacttggcg tttcgcctcc gtcacaaacg
     4981 cattgcccgg gccgaaaatt ttatccactt tcgctaccgt ttgtgtgcca tttgccatcg
     5041 caataatcgc ttgagccccc ccaactgcgt aaatcgtttc caccccacac aaatgggcgg
     5101 tgtagagaat ttcatcggca atcggcggtg gtgagcaaag cacaatcttg ttacaaccgg
     5161 caatttttgc cggcactgca agcattaaca cggtagagaa aagcggggct gaaccgcccg
     5221 gaatataaag ccccaccgca ttaatcgggc gagtgatgac ttggcaacac acccccggct
     5281 gggtttcaat atccacctct tgattttgct gtgccttgtg gaaagcctcg atattcgctt
     5341 tcgcattttg aatcgcttgc ttaagctctg gtgaaatacg gctctgtgct tgctgaatct
     5401 gctgttctga tacaactaag ctctctaatt ttactttatc gaacttttca gctaattcaa
     5461 ataatgcctt atcgccgttg gcaattacat tcgctttaat ttcattaact gccgctttaa
     5521 tactctcgcc aaccacctgt gccggacggg caagatattg ctgctgctca gtttctgtta
     5581 aattgttcca aattagggtt tgcatattta ttccttttac gccaacattt tctcaatcgg
     5641 taaaaccaat acggaacttg cgcccatttc ttttagctgc tccattgttt cccagaacag
     5701 gttttcttgg ctgacaacgt gcattgccac acgggtttgg tcgttagcta acggtaaaat
     5761 agtcgggttt tccacaccgg gtaataaagc ggtaatttcc gccagtttgt ctttgggggc
     5821 gtgcagcata atatacttag attcgttcgc ctgttgcaca ccttgaatgc gggttaataa
     5881 tttatccact aacgcttgtt tttccgctga aagtggttct tggcgttgaa ttaggcaagc
     5941 agttgaacgg taaatcactt caacctcttt taatccgttc gcctctaatg ttgcacctga
     6001 agaaaccaag tcacaaatcg cattcgcaat tccggcactt ggagcaactt caaccgaacc
     6061 ggtgagtaaa atacttttaa acggcacatt ttgctctttc atataccgct ttaataaatt
     6121 ggggtaagaa gtggcaatca cagcatcttc taaatctttg atattgttat aatttttatc
     6181 acgatcaata gctaacgata aacggcagcc accaaaatct aactgacgaa gttttttata
     6241 ggcaacattc tcaccagcac ttaatcgccc taattccact tcctctaata cattttcacc
     6301 gataatccca agatcaacta cgccgtcaaa aactaagcct ggaatgtcgt catcacgcac
     6361 ccgtaaaatt tcaatcggca tattttctga ataggcaatc aggcgttgat cgttccaaat
     6421 gattttcacg ccacattgtt taagcaactc actacattct tggcttaagc gacctttttt
     6481 ctgcatcgca attcttaatc gattttgtgt tgtcattgtt gtttccttct tatgttttaa
     6541 attgtaaaaa taaaaaaacc tctcgaaatc acttccgaga gggttaaatt tatgctgcgt
     6601 ttaggcgtac tcggaagtct tatcttccgc acataccaaa tgcccgaaag attattcagg
     6661 taaatgatgg tggtgatgag tacgaataaa agccattttg ttgttctcca aactaaattg
     6721 ctttaaaaga tacgcttaaa ttttggcaat gacaagtgtt ttttgcgaaa aaattgctat
     6781 ttttcatctc tctaaaacaa ctatcgcaaa cgtttgcgta aagcggtata atttgcctga
     6841 ttttttgcaa attcaacaaa gtaggaataa cactatgcaa atcagcctca aaaagatcta
     6901 ctccggcaaa gtccgtgatc tctacgaaat cgatgaaaaa cgtatgctta tggttgccac
     6961 cgaccgatta tctgcctttg atgttatttt agacgatcct attcctcgta aaggcgaaat
     7021 cctcacccaa atctccaact tctggttcaa caaattagcc cacattatgc caaaccactt
     7081 caccggcgac agtgtgtttg acgtgttacc gcaagaagag gcagaagcta ttcaacatcg
     7141 tgcggtggtt tgcaaacgct taataccggt gaaaattgaa tcgattgtgc ggggttattt
     7201 aaccggctcc gggctgaaag attaccaaca aaccggcacg atctgcggct taacattgcc
     7261 ggaaggcttg gttgaggcca gcaaattacc gcaaccgatc ttcacaccgt ccagcaaagc
     7321 cgaggtgggc gatcacgata ttaatatcag ctacgaagag tgtgaacgcc agatcggtca
     7381 agaacttgcc gccaaagtgc gtgatgccgc tctaaaactc tacactgaag cggcaaacta
     7441 tgccctgacc aaaggaatta ttatttgcga caccaaattc gaattcggct tagacgaaaa
     7501 cggtgaacta acgctaatgg acgaagtcct aaccccggat tccagccgtt tttggtcagt
     7561 tgaaacctac cgagaaggca caaatccacc ttcatttgat aaacaattcg tgcgtgactg
     7621 gctggaaaat agcggttgga acaaacaacc cccagccccg aaaataccgg cagaggtaat
     7681 tgaaaaaacc gtagcgaaat atcaagaagc attggattta ttaaccaaat aacaccacaa
     7741 gcggtcaaat ttacgctatt ttttgcaaaa caaaaacctg taagccaaca cttacaggtt
     7801 ttttagttag tggtaaaaag tgcggttatt ctaccgcact tttgcaaaat tttgtgtaaa
     7861 tctgaccgct tgttagcctt gcgaagaaat acgtttcata tctgtcatat aaccacgtaa
     7921 ttcttgaccg attaactcga ttgggtggtt acggattgcg tcattcacat cacgtaaggt
     7981 aacgttgtcg atttccactg ccggagttgg ttcacctaaa tcgcctttct ctaacgttgg
     8041 gataattttc tccgctaaaa tcggggttgc aacgtgagag aataagtagt taccgtattc
     8101 tgcggtatct gaaattacca cgttcatttc atataaacgc ttacgagcga ttgtatttgc
     8161 gattaacggt aactcgtgta gagactcgta gtaagccgat tcttcataaa taccggctga
     8221 aaccattgta tcaaaggcta attcaacccc tgctttcacc attgcaacca ttaacacacc
     8281 gttatcaaag tattcttgct cagaaatttt aataccgtct gcttgtggtg cgttttcaaa
     8341 ggctgtttta cctgtttctt cacgccattt taataagttg gcatcgccgt ttgcccagtc
     8401 tgccatcatc gttgatgaga actcaccact gatgatgtcg tccatatgtt tttcaaataa
     8461 gaacgctaat tcttctttga tttgctcaga aagctcgaac gcacgcaatt tggcactgtt
     8521 tgataagcga tccatcatta aggtgatacc gccttgtttt aacgcttcgg taatggtttc
     8581 ccaaccgtat tggatcaatt tacctgcgta agccggatct ttaccttccg acactaattt
     8641 gtcgtagcac acgattgaac ctgcttgtaa cataccgcaa agaatggttt gttcacccat
     8701 taaatcagat ttcacttctg ctacgaatga agattctaat acgcccgcac ggtcaccacc
     8761 ggtagcactt gcccacgctt tcgcaatggc taaaccttcg cctttagggt cattttccgg
     8821 gtgaacggca attaaggttg gcacaccgaa accacgtttg tactcttcac gcacttccgt
     8881 gcccgggcat ttcggagcgg tcatcacaac cgttaaatcc ggacgaattt gctcaccttc
     8941 ttccacaatg ttgaaaccgt gtgaataacc aaatgccgca ccttgtttca ttaacggcat
     9001 tacatcggca actactttag agtgctgttt gtccggcgtt aagttaatga ctaaatccgc
     9061 ttcaggaatt aattgctcgt aagtacccac cacaaagccg ttttcagaag cacgtttaaa
     9121 tgaagcacgt ttttcagcaa tcgcttcggc acgtaaagcg taagcaatat ctaagcctga
     9181 atcacgcata tttaaacctt ggtttaaacc ttgagcacca caacccacaa tcacgatttt
     9241 tttgcctttt aagaaattgc agccatctgc aaattcatca cgatccataa agcggcaacg
     9301 acctaactgg tctaattttt gacgtaaatt taaagtgttg aaatagttag ccatttttta
     9361 atccttattt gaattaatga gattgatatg atgttttgtt tgcacattgt tatagtttga
     9421 tttgattata ccttaaccta acattgcgta aattgaaaat attaatattt catattgcat
     9481 aaaatgcaac ttgcaaaaat tttgccaaat ttaaccactt gcaatctcta cgataaagta
     9541 gaaaataacc acctaattta atagaagatc aaaaaatgaa aataaacaga atcattttac
     9601 aaagctgtag cgaatgtggg caacaagtgc gagtcccgct cacgtcaaat ggcaatgccg
     9661 tttgcccggt ctgccataat atattacgca aaagcaatac ttggagcttg caccgtagtg
     9721 cttttttggc attagccatt ttaattttgc ttcccttcgc acttactttt cccttgatga
     9781 gcattgactt actcggcatc aaaattaatg ctaccgtatg ggacggtatt tggaagatgg
     9841 caacggaggg ctacccttac accgctttta tggtgctagt ctgcgcggta ataatgccga
     9901 ttgcatttgt attgctaatt ttaaccattc agctacaacg tattattcgc caacgccccc
     9961 gttacacgct gattttctta actaaaataa aagaatgggt aatgcttgat gtctatttag
    10021 ttgctcttgc ggttgccgct tttaaaattc gagattatgc cgatctacaa ttcgatatca
    10081 acttaatcgc ctttgtgttg gtaacactct taaacaccct actttttatt aaaaccgagc
    10141 caaaacaagc atgggaacgt ttttacccag aatatcacgc cttgccgttt gatcacccaa
    10201 gcaatccaac actttgcccg acctgtgaat attgctttga tgaaactatt ttagacttaa
    10261 aaggacggca acgctgccct cgttgtgaaa gcaatttatc tatttccgac aacgtaaaaa
    10321 tacaacgggt ttgggcttgc ttaattgcag ggactattat gatgattccg gcaaatattt
    10381 tcccgatttc gacaactgaa ctggcaggtc aggtttcggc agattcatta atgtccggcg
    10441 tgcttctgtt tatggaaatg ggtagctaca ccgtggcagc gattgtgttt atcgctagta
    10501 ttgcggtgcc ggtgagcaaa attaccatta ttttttatct cttgctggca attcattaca
    10561 agtggaaaca cccgattcat tggcaaatga aactactaca ctacgtccat tttgtcggac
    10621 gctggtcaat gctggattta ttcgtgttat cattgatgat gtcgctactc gaacgagggc
    10681 agattctcag tttctcggta ggggaagccg ctttctattt tggagcagcc gtattcttaa
    10741 cgatgtttgc ctctgcaaat ttagattcca gaatgttgtg gaagattcat actgtccaga
    10801 aaacatccta aataaagatt ttccgataaa taatacataa catgcaaagt aagaaaagta
    10861 gtacgtaacc caaaatctca atccctattg agtaagaaag agccgataat gtagcaccga
    10921 tagccagaaa gaaattagca aatataaaat agtctttact atatttactt gaggcaatta
    10981 gggtatccat tgcagtacta aagaacattt ccaa
//
LOCUS       DANLZD010000091        10770 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.091, whole genome shotgun sequence.
ACCESSION   DANLZD010000091 DANLZD010000000
VERSION     DANLZD010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10770)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10770)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10770
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.091"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            243..944
                     /locus_tag="PXE26_001711"
     CDS             243..944
                     /locus_tag="PXE26_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5594278.1"
                     /translation="MIGQALGWRATFGIIGIIALIVLMMIWRLLPYLPSKNAGSIKSL
                     PLLFKRPMLIGIYLLVALIVSGHFTAYSYIEPFMIKISSVSVENTTFILLVFGLAGVV
                     ASFLFGRLYGKAPNKFILSGIAIIMCSQLCLLFLSDSTVAMFMVAFVWGIGITGMSIA
                     LQMKVLELAPDATDVATAIFSGTYNLGIGGGALLGSIAIQQLGLANIGFAGGSIAFVA
                     MVWFVFVSLKYRQLR"
     gene            complement(1011..2744)
                     /locus_tag="PXE26_001712"
     CDS             complement(1011..2744)
                     /locus_tag="PXE26_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3413 domain-containing protein"
                     /protein_id="HDL5594279.1"
                     /translation="MFARLRSLLPTNSRQYREETSQKITWGHWFALFNIVLALLISSR
                     YAFNADWPNTLVGKLYFFVSLFGHFSFVVFAGFLLILFPLSFIVKNHRTYRGLSVILA
                     TIGQTVLLVDTEVFKQFYLHLSPLVWDLLVNPEEGELTRKWQLLFVPMPLLLLAEMLY
                     SRWCWQKLRSFSRQKWGKYVALFFVISFTATHLIYAWADMNAYRPITAQRANYPLSYP
                     MTARNFLEKHGFIDRVEFNQEIEESGRLDTFYLNYPKSPLIATKTPSTNILLINLSGL
                     SKQIINAETMPKLTEISQQSHRFMQHYSSGDSASAGALGLFYSLSGKYLDSVLADKTV
                     SPLIEIARKSDYQLGLFSHNGFADPIYHQAIFSGILLPTAHSNVGAIGQWKNWISSRS
                     LENPFFSYLDLRMPFAHTAQEQAKLLDWQFAEIWQHLTQNALLANTLVIITADISNEV
                     GAENSFDKQHIQVPMMFYWQGESKEYHFLSSHLDIMPTLLSQFFGVQNPLNDYAQGMD
                     LSTQNQRLWVSSSNHKWNVAIMPNGDQYQIDRKGNFKHFNSNGEHEKDARPPLALFLQ
                     MIQQSNQFIEK"
     gene            complement(2749..2970)
                     /locus_tag="PXE26_001713"
     CDS             complement(2749..2970)
                     /locus_tag="PXE26_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1414 domain-containing protein"
                     /protein_id="HDL5594280.1"
                     /translation="MATKSKYHTKQFEQLLADLIATIEKHKAPVDLSLMALGNMITNI
                     LIENIQSPAQREALADAFADALKQSLKTK"
     gene            3209..3781
                     /locus_tag="PXE26_001714"
     CDS             3209..3781
                     /locus_tag="PXE26_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HDL5594281.1"
                     /translation="MSRRSEPKEEMVNRILSATESLIVQEGLQNLSMRSIAKEAGIAS
                     GTLYLYFKTKDDLLHSLAAQLLECYNGYMHFEFKPEMALFEQYKALVNKKWQFLIERL
                     DLVKQFQAVIGIDELIRETIADETSFWNKLILEGKKQRIIADLSNELLYGLSIGTLVD
                     IQYLQNLNQENQFDGYLDEIILRTWKAITF"
     gene            3812..5017
                     /locus_tag="PXE26_001715"
     CDS             3812..5017
                     /locus_tag="PXE26_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDL5594282.1"
                     /translation="MTTETQKLGKGRKFLIVLTLLIVLIVFAAIVGLQKIGAMKKAEA
                     AANMPEAVSEVTAMQVTTQEWTPTISAVGYIRPNQGAMLSAETSGVVSRVLVTSGQRV
                     KKGDLLVEFDSSVEIANLRASEAQLPNAKANLERYRNLIASNSASKAEFDNAQSTYNQ
                     LLANIEALRATIKRRQIYAPFSGLAGIVNVNVGQYITMGTEIVRVEDQSSMKVRFTLP
                     QTNLEQISIGQKVTAVIDALPAQTFPAKIVAIDPAVDRLTGLINVEAVIEEGQEKLLS
                     GMFARLNVALPTETGQIVVPQISIAYTMYGETVYVLQPLSDEDKEMVNKMAVQNPSLD
                     VNKMYRAKQMEVKTADRKGNYSQLSKGVKAGDLIVTGGLQRLSNNALVKVSDTEAVGI
                     TTPAKNSKL"
     gene            5031..8198
                     /locus_tag="PXE26_001716"
     CDS             5031..8198
                     /locus_tag="PXE26_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HDL5594283.1"
                     /translation="MKFTDIFIKRPVLAVCISLLITILGLQAIEKLQVREYPEMTVSI
                     VTVSVNYSGADARLMQTLVTSQLEEAVAQADNIDYMTSSSSPSTTTVTAKMKLNTDPN
                     AALSDISAKVNAVRSNLPSGIDDPSIRVSTGSNDALMYIRFVSDELNTSQVTDYINRV
                     VKPQFFTVNGVSSVDVYGSVFGLRIWLDPDKMASNNLSGAAVLSALSANNLQTAAGNS
                     NGYYTVYRNKVLSTTPSVTELEEVTVSTTKDGKTIKLKDIATVELDKYQDAARATVGG
                     KDAVVLAVSVAATANSLTVAKDIYPMFEQVLKNLPSTIQGDIVYDKTIAIDSSIKEVI
                     KTIGEATVIVLVVIILFLGSLRAMIVPVITIPISLIGVLFFLQMFGFSINLLTLLALV
                     LAIGLVVDDAIVVLENVERHVKEGKTPFDAAIIGTREIALPVISMTITLGAVYSPMAL
                     MTGVTGTLFKEFALTLAGAVFISGIAALTLSPMMSSRILKEHKEGEESAFARVVHRSL
                     DKMTSCYTNMLSGIMAVRGFVLFFAVLIFASLPMLFGSLSSEVAPTEDRGFVVGISNG
                     PSNTNLDYTEAALAQFNQEVTKLPEVSSLMTVSGFNGANSALSIIALKDWNDRSRERA
                     AISNDVAAIGKKVVGMDVNAIAFPEISTGENGLPFSLVITTADSYEKLAIVASEFLKK
                     AQTSGQFFFANLDLKFDTVTMNMKFDREKMGAYGVTMQQVSGTLGAFLSGAIITRVDI
                     DSRAYPIVSQAVRNDRLNPEDLMNYYVTTATGQSIPLGSFVTMELKTSPSSLPRMSQL
                     NSATIGGVVSGSIGDAVNWAKAELDRTLPSGYQYDFRGESRQFVQEGNAMAMTFALAV
                     IIIYLVLAIQFESWRDPLVILVSVPLAVSGALLVMNIPTAMKGLFMGIAAGTGSKDMM
                     AFANGIWTAGYTLNIYSQVGLITLVGLITKHGILMCEVAKEEQLLHGKSRYEAIFHAA
                     TIRLRPIMMTTAAMIAGLIPLLFAVGAGAIARFSMGMVIVAGLAIGTLFTLFILPVIY
                     TFLGQEHKPLREFDEEKYFPTTKEA"
     gene            8426..9889
                     /gene="guaB"
                     /locus_tag="PXE26_001717"
     CDS             8426..9889
                     /gene="guaB"
                     /locus_tag="PXE26_001717"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HDL5594284.1"
                     /translation="MLRIKQEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM
                     LSAAMDTVTETKLAISLAQEGGIGFIHKNMSIERQADRVRKVKKFESGIVSEPVTISP
                     DMTLAELAELVKKNGFAGYPVIDENQNLVGIITGRDTRFVTDLSKTVREFMTPKDRLV
                     TVKENASREEIFHLMHEHRVEKVLVVNNEFQLKGMITLKDYQKAESKPNACKDEFGRL
                     RVGAAVGAGPGNEERIDALVKAGVDVLLIDSSHGHSEGVLQRVRETRAKYPDLPIVAG
                     NIATAEGAIALADAGASAVKVGIGPGSICTTRIVTGVGVPQITAIAEAAAALKERGIP
                     VIADGGIRYSGDISKAIAAGASCVMVGSMFAGTEEAPGEIELYQGRAFKSYRGMGSLG
                     AMSKGSSDRYFQSDNAADKLVPEGIEGRIAYKGYLKEIIHQQMGGLRSCMGLTGCATI
                     EELRTKAEFVRISGAGIKESHVHDVTITKEAPNYRMG"
     gene            10010..10681
                     /locus_tag="PXE26_001718"
     CDS             10010..10681
                     /locus_tag="PXE26_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HDL5594285.1"
                     /translation="MLQAIIFDMDGVIVDTEYLEFSLQKQFIEDIKEHSRPITLEQQS
                     EVVGKCLKEIPVIIKKLSESSLPIEEIRARYYAFFQDLFSKVDFKTIFRADIQQIIQF
                     AKQNQIKLAVASSSALSHIENILTVCGIKDEFDLIVSGEQFEHSKPDPTIYRYTCEKL
                     GVEPQNAVAIEDSYYGMLAAKTAGLTVIGYEEKRILIDQSLADYMGKDMKEILKILQK
                     CNTPS"
BASE COUNT         3133 a         2005 c         2446 g         3186 t
ORIGIN      
        1 cggagattat cgttccttag agtatttagt cttgcctttg cggcttttat agtaaacacc
       61 accgaattta ttcctattgc attgctttca gacattgcaa gcagtttcca aatggagcct
      121 tcatcggcag gcattatgat gacggtttat gcgtgggtgg tatttttatt atcgttaccg
      181 ttgatgttac tcacggcgaa tatggaaaga aaacggctgt tgctgatgtt atttatgggc
      241 gaatgatcgg gcaagcctta ggctggcggg caacctttgg cattattggg attatcgctt
      301 tgattgtgct aatgatgatt tggcggttgc tgccttattt accaagcaaa aatgcaggct
      361 cgataaaaag tttgcctttg ttatttaaac gcccgatgtt aatcggcatt tatttgctgg
      421 tggcattgat cgtttcagga cattttaccg cttacagcta tattgagccg tttatgatta
      481 aaatcagttc ggtgagtgtg gaaaacacca cctttatttt gctggttttt ggcttggcag
      541 gtgtggtggc aagtttttta tttggtcggt tatatggcaa agccccgaat aaatttatct
      601 taagcgggat cgccattatt atgtgcagcc agctttgttt actgtttttg agtgactcaa
      661 cagtggcaat gtttatggtc gcttttgtct ggggaattgg cattaccgga atgagcattg
      721 cgttgcaaat gaaggtgctt gaacttgccc ctgatgcgac tgatgtcgca actgcaattt
      781 tttccggcac ttataattta ggcattggcg gtggagcatt actggggagc atcgctattc
      841 agcaactggg attagccaat atcggatttg ccggtgggag tattgctttt gtagcaatgg
      901 tttggtttgt atttgttagc ttgaaatata gacagctcag atagtgacaa gcggtcatat
      961 tttgctgaaa ttttgcaaat tttcctgcaa aaatgaccgc ttgttgaaca ttacttttca
     1021 ataaattgat tgctttgttg aatcatttgt aagaacaacg ctaatggtgg tcgagcatct
     1081 ttctcgtgtt cgccattgct gttaaagtgc ttaaagttgc ctttacgatc aatttgatat
     1141 tgatcgccat tcggcataat cgccacattc catttgtgat tagaactgga tacccataaa
     1201 cgttggttct gggtgcttaa atccatacct tgtgcataat cattcagcgg attttgcacg
     1261 ccgaagaatt ggctcagtaa ggttggcata atatctaaat ggcttgaaag gaaatggtac
     1321 tctttgcttt cgccttgcca gtagaacatc atcggcactt gaatgtgttg tttatcgaag
     1381 ctattttctg ctccaacttc attactaata tcggcggtaa tgattaccag cgtattcgcc
     1441 aatagtgcat tttgggtcaa atgttgccag atttcagcga attgccaatc taataatttt
     1501 gcctgctctt gagcggtgtg ggcgaagggc attcttaagt ctaaatagct aaagaacgga
     1561 ttttccaatg agcgagagct gatccagttt ttccattgcc caatcgcccc tacattactg
     1621 tgcgccgtag gcaataaaat accagagaag atcgcctgat gataaatcgg gtcggcaaaa
     1681 ccattatgtg aaaacagccc taattgatag tccgattttc tagcgatttc gataagcggt
     1741 gacacggttt tatcggctaa aacggaatcc aaatatttac cgcttaaact gtaaaataga
     1801 cctaatgcac cggcagaggc tgaatcacca ctactgtaat gctgcataaa gcggtggctt
     1861 tgttggctga tttctgtcag cttaggcatt gtttcggcat ttattatctg tttagataaa
     1921 cctgataaat taatcagtaa aatattagtt gagggcgttt tggtcgcaat caagggagat
     1981 tttggataat tcagatagaa agtatctagt ctgccacttt cttcaatttc ttgattaaat
     2041 tctactcggt caataaaacc gtgtttttct aagaaattac gagccgtcat cgggtaagaa
     2101 agtgggtagt ttgctcgttg agcggtaatc gggcggtagg cattcatatc tgcccacgca
     2161 tagattaaat gagtagcggt aaagctgatc acgaaaaaga gagcgacata tttgccccat
     2221 ttttggcggc taaaactacg cagtttctgc cagcaccagc gagagtagag catttctgcc
     2281 agcaaaagga gtggcattgg tacaaacagc agttgccatt tacgggtcag ttccccttct
     2341 tccggattaa ctaacagatc ccatacaagc ggtgataaat gcagataaaa ttgcttgaag
     2401 acttcagtat ccaccaataa cacggtttgc ccgatggtgg ctaaaatcac ggaaagccca
     2461 cgataggtgc gatgattctt aacaataaaa ctgagcggaa acagaattaa tagaaatcct
     2521 gcaaagacca caaagctgaa atgcccgaac aggctgacaa agaaataaag tttgcctaca
     2581 agcgtgttcg gccagtctgc attaaatgcg taacgagagg aaatgagtag tgccaacaca
     2641 atattaaata gtgcaaacca atgcccccac gtgattttct gtgaggtttc ttctcgatat
     2701 tggcgagaat tggtcggcaa taaactgcgt aggcgtgcaa acatcatctt atttggtttt
     2761 tagtgattgt tttaatgcat cggcaaaggc atcagcgaga gcttctcttt gtgccgggct
     2821 ttgaatattt tcaattaaaa tgttagttat catattgcct aatgccatta acgataaatc
     2881 caccggtgct ttatgctttt ctatggtggc gatgaggtca gccaatagct gctcaaattg
     2941 tttggtgtgg tatttagatt tcgttgccat attgaaataa agatgatcct ataattaggt
     3001 acaaatagta gcacaaaaat aataataaag tagcgttaag cgttattgtt tgagtgattt
     3061 ttgcaaagtt ttagccaaaa atgaccgctt gttcaataaa tgaggaattt tgcaactatt
     3121 ttattttaat ttgataggtg ttttctgctt tcttttttca taaaaaaagc tataatgaac
     3181 ggctgttcat tataggtaag gagataaaat gtctaggcga agcgagccaa aagaagagat
     3241 ggtaaaccgt attttatcgg caaccgagtc gctgattgtg caagaaggtt tgcaaaacct
     3301 ttcaatgcgt agtattgcaa aagaagcagg gatcgcttcc ggtacattat atctttactt
     3361 taaaaccaaa gatgatttat tgcactcatt ggctgcccaa ttactcgaat gttataacgg
     3421 ttatatgcat tttgagttta agcctgaaat ggcgttattt gagcaatata aagcgttggt
     3481 caataaaaaa tggcagtttt taatcgagcg tttagatttg gtaaaacagt ttcaagcggt
     3541 gatagggatt gatgaattga ttcgggaaac catagctgat gaaacttcct tttggaataa
     3601 attaatttta gaagggaaaa agcaaaggat tattgctgat ctatctaatg agttgcttta
     3661 tggattaagc atcggcacat tggtggatat ccaatatctg caaaatctga atcaagaaaa
     3721 tcagtttgat ggatatttag acgagattat tttacgcact tggaaagcaa tcacttttta
     3781 agtttctttt tattagtttt atggagaatg tatgacaacg gaaacacaga agctgggtaa
     3841 aggcagaaag tttttaattg tactcacatt gttaatcgta ttgattgtgt ttgctgcaat
     3901 cgtagggtta caaaaaatcg gggcaatgaa aaaagccgaa gcagcggcaa atatgccgga
     3961 ggcggtgagc gaagttactg ctatgcaagt gacgacccaa gaatggacac caaccatttc
     4021 tgcggtcggt tatattcgcc caaatcaagg ggcaatgtta agtgctgaaa cttcaggcgt
     4081 ggttagccgt gttttggtca cttcaggaca gcgtgtgaaa aaaggtgatc tgttagtaga
     4141 atttgacagc agtgttgaaa ttgctaactt gagagcctct gaagcgcaat taccgaatgc
     4201 caaagcaaat ttagagcgtt accgtaatct gattgcctca aacagtgctt ctaaagccga
     4261 gtttgataat gctcaatcta cctacaacca attattagcc aatatcgagg cattgcgtgc
     4321 tacgattaaa cgccgtcaaa tttatgctcc gtttagtggt ttagcgggta tcgtgaatgt
     4381 gaatgttggg caatacatta caatgggtac ggaaattgtg cgtgtggaag atcaatcttc
     4441 aatgaaagta cgttttacct tgccgcaaac taatttagag caaatctcga ttgggcaaaa
     4501 agtgacagcc gtaattgatg cgttaccggc acaaaccttc ccagctaaaa ttgtggctat
     4561 tgatccggct gtggatcgtt taaccggctt aattaatgtg gaagcggtga ttgaagaagg
     4621 gcaggaaaaa ttgctttcag gtatgtttgc ccgcttaaat gttgctttac caacagaaac
     4681 cggacaaatc gtcgtaccac aaatttctat cgcttacact atgtatggtg aaacggtata
     4741 tgtgctgcaa ccattatctg atgaagataa agaaatggtg aacaaaatgg cggtacaaaa
     4801 cccaagttta gatgtaaaca aaatgtaccg tgcaaaacag atggaagtga aaacggctga
     4861 ccgcaaagga aactattcac aattatccaa aggcgtgaaa gcaggtgatc tgattgtaac
     4921 aggcggttta caacgtttaa gtaataatgc gttggttaaa gtttctgata cagaagccgt
     4981 aggcattacc acaccggcga aaaacagtaa actgtagtgg agtgagttaa gtgaaattta
     5041 ctgacatctt tattaaacgt cctgttttgg cagtttgtat cagcctattg attacgatcc
     5101 taggcttgca agcaatcgaa aaattgcagg tgcgtgaata tccggagatg acggtctcga
     5161 ttgtaaccgt gagtgttaac tattcaggtg cagatgcacg tttaatgcag acactggtta
     5221 cctcacagtt agaagaggct gttgctcaag cggataatat tgactatatg acttcatcaa
     5281 gctctccaag taccactacg gtaacggcaa aaatgaagtt aaataccgat ccgaatgccg
     5341 cactttccga tatttcggca aaagtgaatg cggtacgctc aaatttaccg agcggtattg
     5401 atgatccgtc aattagagtc tcaaccggtt caaatgatgc gttaatgtat atccgatttg
     5461 tctctgatga acttaataca tcacaagtta ccgattatat taaccgtgta gtaaaaccac
     5521 agttctttac ggtaaatggt gtttctagcg ttgatgtgta tggctctgtt tttggcttac
     5581 gcatctggct tgatccggat aaaatggcga gcaataacct atcaggggcg gctgtattat
     5641 cggcattaag tgccaataac ttgcaaaccg ctgcgggtaa ttctaacggt tactatacgg
     5701 tttatagaaa caaagtactt tctaccacgc cttctgtgac agagttagaa gaggttacgg
     5761 tttcaaccac caaagatgga aaaaccatca aattaaaaga tattgcgact gttgagctgg
     5821 ataaatacca agatgcagca agagcaacgg ttggcggtaa agatgcagtt gtgcttgctg
     5881 tttcggtagc cgcaacggca aactctttaa ccgtagcgaa agatatttat ccgatgtttg
     5941 agcaggtatt aaaaaatcta ccaagcacca ttcaaggaga tattgtttac gataaaacca
     6001 ttgcgattga tagttctatc aaagaagtaa ttaaaactat tggtgaggca accgtcattg
     6061 tattggtagt aattatcctg ttcttaggtt cattacgagc aatgattgta ccggtgatta
     6121 ccattccgat ttccttaatc ggggtattat tcttcctgca aatgtttggt ttctcgatca
     6181 acttgcttac tttgctggcg ttggtattag cgatcggctt ggtagtggac gatgcgattg
     6241 tcgtacttga aaacgtagaa cgtcacgtta aagaaggtaa aacgccattt gatgcagcga
     6301 ttatcggtac acgtgaaatt gctttaccgg ttatttcaat gactattact ctgggtgcag
     6361 tatattcacc aatggcatta atgaccgggg taacagggac actatttaaa gagttcgctt
     6421 taacgcttgc cggtgcggta tttatttcgg ggattgcggc attaaccctt tcgccgatga
     6481 tgtctagccg aatattaaaa gaacataaag aaggggaaga gtcagcattt gcccgcgtgg
     6541 tgcatagatc actagataaa atgaccagct gctataccaa tatgctaagc ggtattatgg
     6601 ctgttcgtgg tttcgtctta ttctttgcgg tgctgatctt cgccagttta ccgatgttat
     6661 ttggctcact ttccagtgaa gttgcaccga cagaagaccg tggctttgtg gttggtattt
     6721 ctaatggacc ttcaaacacc aatttagatt ataccgaagc agcgttagcc caatttaatc
     6781 aggaagtaac taaattacct gaagtatctt ccttaatgac agtttcaggc tttaatggtg
     6841 caaatagtgc attatcgatt attgcattaa aagattggaa tgatcgtagc cgtgaacgtg
     6901 ctgcgatttc taatgatgtg gctgcaatcg gtaaaaaagt ggtgggtatg gacgtgaatg
     6961 caattgcatt ccctgaaatt tcaaccggtg aaaatggtct accattctca ttagtgatta
     7021 ctaccgctga tagctatgaa aaattggcaa tcgttgcctc tgaattcttg aaaaaagccc
     7081 aaacttccgg tcagttcttc tttgcgaatt tagatttgaa atttgatacg gtcacgatga
     7141 atatgaaatt cgaccgtgaa aaaatgggtg cttatggcgt gacaatgcag caggtgagtg
     7201 gcacattagg ggcattctta tccggtgcga ttattactcg tgtcgatatt gactctcgtg
     7261 cttacccgat tgtgtcgcaa gcggtgcgta atgatcgttt aaatcctgaa gatttaatga
     7321 attactatgt cacgactgca acagggcaat ctatcccgtt aggttcattt gtgacgatgg
     7381 aattaaaaac atcaccatct tctttacctc gtatgagcca attaaactcg gccaccattg
     7441 gtggggtagt atctggctca atcggcgatg cggtaaattg ggcgaaagca gaattagatc
     7501 gcactttacc atcaggttat caatatgact tccgtggtga atctcgccag ttcgttcaag
     7561 aaggtaatgc gatggcaatg actttcgctc tagcagttat cattatctat cttgtacttg
     7621 caattcaatt tgaatcttgg cgtgacccat tagtaatttt ggtttctgtg ccgttagctg
     7681 tgagtggtgc attgttggta atgaacattc caaccgcaat gaaaggcttg tttatgggga
     7741 ttgcagcagg cactggctcg aaagatatga tggcattcgc caacggtatt tggacggcag
     7801 gttatacctt aaatatctat tcacaagtag gtctaattac ccttgtcggc ttaattacta
     7861 aacacggtat cttgatgtgt gaagtggcga aagaagagca gttactgcac ggcaaatcac
     7921 gctatgaagc tattttccac gcagccacga ttcgtttacg cccaattatg atgacaacgg
     7981 cagcaatgat tgcaggctta attccgcttc tgtttgcggt gggtgccggt gcaatcgccc
     8041 gcttcagtat gggtatggta atcgtagcag gcttggcaat cgggacattg tttactctgt
     8101 ttatcttgcc ggttatctac actttcttag ggcaagaaca caagccatta cgtgaatttg
     8161 acgaggaaaa atatttccca acgacaaaag aagcatagtt ttaaatagca aaagagcgta
     8221 gcgatacgct cttttttgtt ggcttacaag cggtcgtttt ttatttattg tttgctaaaa
     8281 aatcacaaaa tttaaccgct tgaaagtata ttttcagata gcgtaaacgt ttccctattt
     8341 acagaaacct agttcctctg tataatccgc tcgcaatttt ccagtacaga ttttcaattt
     8401 aatcattttt taaggaataa ttgcaatgct acgaattaaa caagaagccc tcacttttga
     8461 tgatgttctt ctcgtcccgg cacattctac tgtgcttcct aatactgctg atctttctac
     8521 tcaattaact aaaaccattc gtttaaacat tccgatgctt tctgctgcaa tggataccgt
     8581 tacagaaact aagcttgcga tctcccttgc tcaagaaggc ggcattggtt ttatccataa
     8641 aaatatgtcg attgaacgcc aggcagaccg tgtgcgtaaa gtgaaaaaat ttgaaagtgg
     8701 tattgtttct gagccagtga cgatttctcc tgatatgaca ttagcggaat tggctgaatt
     8761 ggtgaaaaag aacggttttg caggctatcc ggtgattgat gaaaaccaaa atttagtggg
     8821 aattattacc ggacgtgata cccgatttgt cacggattta agcaaaacag tgcgtgaatt
     8881 tatgacacca aaagaccgtt tagtgacggt aaaagaaaac gcaagccgtg aagaaatttt
     8941 ccacttaatg cacgaacacc gagtggagaa agtgctggta gtgaataatg aatttcagtt
     9001 aaaaggaatg attaccctaa aagactacca aaaagcggaa agcaaaccga atgcctgtaa
     9061 agatgagttt gggcgtttgc gtgtgggggc ggcagtggga gccggtccgg gcaatgaaga
     9121 acgaattgat gctttagtaa aagcgggtgt cgatgtgcta ttaatcgact cttcgcacgg
     9181 gcattctgaa ggtgtattac aacgtgtgcg tgaaacccgt gcaaaatacc ctgatttacc
     9241 gattgttgcc ggtaatattg ccactgcaga aggagcgatt gcgttagctg atgcaggagc
     9301 cagtgctgtg aaagtaggaa tcggcccggg ttcaatttgt accaccagaa ttgtaacagg
     9361 cgttggcgtg ccacaaatca cggcaatcgc agaagcggca gctgcgctta aagaacgagg
     9421 cattcctgtg attgctgatg gtggaattcg ttattcaggc gatatttcaa aagctattgc
     9481 cgccggtgca agttgcgtaa tggtcggttc gatgtttgcc ggcacagaag aagccccggg
     9541 tgaaattgag ctttatcaag gcagagcatt caaatcctac cgtggaatgg gatcattagg
     9601 tgcaatgagt aaaggctcgt cagatcgcta tttccaatct gataatgccg ccgacaagct
     9661 cgtaccggaa gggattgaag ggcgtatcgc ttacaaaggc tacttgaaag aaattatcca
     9721 ccaacaaatg ggcggcttac gctcctgtat gggattaacc ggctgtgcca ctattgaaga
     9781 actccgcacc aaagcagaat ttgtccgcat tagtggtgct ggtattaaag aaagccacgt
     9841 ccacgatgtg acaattacca aagaagcacc gaactaccga atgggttaat agcctttctc
     9901 actctctccc cttgtgggag agagaccgtt ttaaattacg ttcagtaatt taaaacagag
     9961 agagggaata agtggttaga ttttcttaaa attttacaaa agaggctata tgctccaagc
    10021 tatcattttt gatatggacg gcgtgattgt ggataccgaa tatctggaat tttccttaca
    10081 aaaacagttt attgaagaca tcaaagaaca cagccgcccg attactttag aacaacaatc
    10141 ggaagtggta ggcaaatgtt taaaagaaat tccggtgatt atcaaaaaac taagcgaatc
    10201 cagtttgccg attgaggaaa ttcgtgcacg ttactacgcc tttttccaag atctgtttag
    10261 caaagtggat tttaaaacca ttttcagagc cgatattcag caaattattc aatttgccaa
    10321 gcagaatcaa attaagcttg cggttgcctc ttcttccgcc ctttcgcata ttgaaaatat
    10381 tctcacggtt tgcggcatta aagacgaatt tgatttaatc gtcagcggtg aacagtttga
    10441 acacagcaag ccagacccaa ccatttaccg ctacacctgc gaaaaattag gcgttgagcc
    10501 acaaaatgca gtggcgattg aagactccta ctacggaatg ctcgccgcca aaaccgcagg
    10561 cttaacggtg attggttacg aagaaaaacg aatactgatt gaccaaagtt tagcggatta
    10621 tatgggcaaa gatatgaaag agattttgaa gattcttcaa aaatgtaata ctccaagtta
    10681 ataaacggtc gatttttata gaaattttgt caatgtttct acttcaagta cttggaacag
    10741 tctatcggct tgagtaacct agaaatgaga
//
LOCUS       DANLZD010000092        10675 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.092, whole genome shotgun sequence.
ACCESSION   DANLZD010000092 DANLZD010000000
VERSION     DANLZD010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10675
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.092"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            120..1238
                     /gene="malK"
                     /locus_tag="PXE26_001719"
     CDS             120..1238
                     /gene="malK"
                     /locus_tag="PXE26_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005552148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter ATP-binding
                     protein MalK"
                     /protein_id="HDL5594286.1"
                     /translation="MANVSLRNVGKSYGDVHISKDINLEINEGEFVVFVGPSGCGKST
                     LLRMIAGLEDITTGELYIGGKLMNEVEPSKRGIGMVFQSYALYPHLDVAENMSFGLKL
                     AGVSKAERDQRVNQVAEILQLAHLLDRKPKALSGGQRQRVAIGRTLVSQPEVFLLDEP
                     LSNLDAALRVQMRVEISKLHKKLNRTMIYVTHDQVEAMTLADKIVVLNAGGIAQVGKP
                     LELYHYPANRFVAGFIGSPKMNFLPVKVIAVEPERVKIELPDANHHNFWIPVSGEGVN
                     VGDNLSLGIRPEHLVPSDQTQVTLHGIVQVVELLGNETQIHLEIPEIKQPTLIYRQND
                     VVLVNEGDDLNIGILPERCHLFKEDGTACKRLFVEKGV"
     gene            1336..2625
                     /locus_tag="PXE26_001720"
     CDS             1336..2625
                     /locus_tag="PXE26_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltoporin"
                     /protein_id="HDL5594287.1"
                     /translation="MKKTVLAVAISGAMFAASASAVDFHGYARSGIGWTSGGGEQSAF
                     TVNGGGSKYRLGNESDTYAELKLGQELFKSGEKSIYFDTNLAYGGTLHNNDWTPTSPA
                     LRELNVQFKNFADSLPGATLWAGKRFYQRHDVHMNDFYYWDISGPGAGVENIDLGFGK
                     LSLAVTRDTERGGANTFGYTTVYKLDPSTGKIKLDKQRNKADVYNDIFDVRLAGIELW
                     KDGSLELGFDYGNAHAKKGAALEKGATKNGYMVTAEYTQGNFFGGFNKFTAQYATDSM
                     TSWNNGHAQGSKADNKGNMLRLINQGVVQASDKVEVMYALIYEKTKLDNKQGKTWYSA
                     GIRPMYKWNDTMSTLLEVGYDRIKDQATGKKNDLVKYTVAQQWQAGNSIWARPAIRVF
                     GTYARWNDKFNTKARTDAGYKAKDGEFITGVQFEAWW"
     gene            2706..3602
                     /gene="malM"
                     /locus_tag="PXE26_001721"
     CDS             2706..3602
                     /gene="malM"
                     /locus_tag="PXE26_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose operon protein MalM"
                     /protein_id="HDL5594288.1"
                     /translation="MKKTLLSTAIFFAHLLVVSPSIANGSAGKSIHINSAELAQIQWQ
                     DVPFSQTVKTDLSEQHKQAFTTAFAGIASPVAAYRIPANQGTLEIEIESPVMDKNVFV
                     PTAVVLDSQFNVASTYPSSEFKLLEERGLKGSRLGAELNLTPAMNQDYIYLLIYTTQQ
                     DLAKTTMMPHPAKTYAKATGKQPPAINDIEVAHSLKGQIHINVTGSNGTKFIGLPTEI
                     FSSNKAATPAAKTAIPLPIKENPVAVKTAVDKDTEAYFNQAVMKAIKAKDINKAMNLV
                     NEAEKLGLTSPRQIFLKNVSSN"
     gene            complement(3762..5630)
                     /locus_tag="PXE26_001722"
     CDS             complement(3762..5630)
                     /locus_tag="PXE26_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDL5594289.1"
                     /translation="MSGLVSPELIKTVALLATSVTIVPLFKRLGLGSVLGYLVAGCLI
                     GPSGIGLFQDPAAVVHMAELGVVMFLFIIGLEMHPELLWAMRKAIFGRGFLQVAICGT
                     LLTLAGIYLLGFSKEVAFIAGMGFTLSSTAIVMQVLEDKGISSTPKGQRIVATLLFED
                     LAIVPLLASVAFLAPNQVDAESSTNWSAIGLSLVAVLILVASGKWLMNPIFRVISKAK
                     VREMMTAAALLVVLGSALLMEISGLSMAMGAFLAGVMLSESSFRHQLEADIEPFRGLL
                     LGLFFMGVGMSLDLSLVLNNWLWLLVIVAVYVIGKGLGIFIAASITRLTLNESIVRTT
                     IMAHGGEFAFVLFSAAATAGILTPDTHATLTAAVIVSMLLSPLLILIKQGVRKKKAKN
                     ESTNMTGVELPEDLEANVLVIGFGRFNQIVCQALLAKGLSVSVIDSNTDHIRAAARFG
                     FKLYYGDGARLDVLRASGIANANCVIVGVGNPERTEKIVELIKSEYPLVPVFARTYDR
                     QSAVDLVKKHHVDYHIRETFESALALSQAAIERLGSSEEEAKQIISYVRRLDAERFNE
                     ELLHGFSAEVIRKYWVPTPWVNPQHEGSALNEETADILEELGETVEVIKVDITDKN"
     gene            complement(5661..8198)
                     /locus_tag="PXE26_001723"
     CDS             complement(5661..8198)
                     /locus_tag="PXE26_001723"
                     /EC_number="4.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HDL5594290.1"
                     /translation="MKTLTLTANKITAVEGAAIGANQGSFAQKLNSTKARIDQLNAYR
                     IERAINANNHHFMHVFSLIPLLIHLNHPVLPAYVENAPQGIWHFQLSDYQKQFLVSYR
                     FDEAISADHLGPHPSFDALYSMGSTGTITQTSCSDLDLWLCYPNHFTIEQYKLMELKI
                     NKLQEWAKTFQIDINIYLMNPEQFKSQTYNSSVTDEHSGSAQHFFLLDEFYRSAILLA
                     GKRLLWLHLHKNEYQNVHNNPEIDLTEWIDFGDFSSLSTSEFFGASLWQLYKGINNPY
                     KSAIKILLLECYAHTYPKTKLISKEFKKKLLSDNALEYHFDPYLAMLELVTEHLRSRK
                     EWVKLDRLRVCFYAKAVEGEINNNWRSRDLDELVNQWSWSEKQIQLLQNRQHWKIKQV
                     MNHENMLIDHLLQSYRNLIHFARKFHINPSIMTNDTDILMRKLYSVFEALPGKISLIN
                     HKISSNLAEKAITFIEAKVGSALQPGWYLVNQAPKSRYDSENRYVHYNKSPIKLIAWG
                     YFNGIINAATNLHTVSPNLDIEKLRQFITDLRLSFPIQAPEVTNDDMHHPNEIRNLVI
                     ALNLVQDPTEHIDELPKKVYPSDLFNFGKAQKTLVGSVSIIYRNVWNEIRTQHFDGED
                     AILKALKLVSNRIYQGNSSPQSVNVFCYSKYLRSELRDFVADLVHKCITIQTGCLLQE
                     NEFSTLKVAGKTWQFLFHKKTFSIKQIDEQQAVENLNSFAKTKQNAKSENEKKKEFPQ
                     QISEFASEGFLQFFFEDNVDNSFNVYVVDERNNVESYYNCFGNKEEKIRKINKLQNEK
                     QLKTETPASFGSFNHPQFYQLISPNGELCIVPFQSRQHLDYLAQKHH"
     gene            8459..9676
                     /gene="fabB"
                     /locus_tag="PXE26_001724"
     CDS             8459..9676
                     /gene="fabB"
                     /locus_tag="PXE26_001724"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HDL5594291.1"
                     /translation="MKRVVITGLGVISSIGNNKEEVLESLKAGKSGIEFVPEFAEVGM
                     RSQVAGTIKLNPAELIDRKIYRFMGDAAAYAYLSMKEAIEDSGLTEEQVSNDRTGLVI
                     GAGTGSAHSQLVACDAVRGPRGVKAVGPYAVTKTMASSVSACLATPYKIRGVNYSISS
                     ACATSAHCIGHAMELIQLGKQDVVFAGGAEELSWECATEFDAMGAVSTKYNETPTKAS
                     RAYDANRDGFVIAGGGAVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAPSGEGA
                     ERCMRQAMATVNGEIEYINVHGTSTPVGDVKELGAIRNVFGDKTPAISSTKSMTGHSL
                     GAAGAHEAIYSLLMLDNNFIAPSINIETLDEQAQGMNIVTERQDKALTTVMSNSFGFG
                     GTNACLVFQRYSK"
     gene            9794..9940
                     /locus_tag="PXE26_001725"
     CDS             9794..9940
                     /locus_tag="PXE26_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594292.1"
                     /translation="MIKPLDSVYWRGKDVSEFFARKRLPDTAVQCVKDNELSYVYGYS
                     TSFV"
     gene            9909..10619
                     /locus_tag="PXE26_001726"
     CDS             9909..10619
                     /locus_tag="PXE26_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4189 domain-containing protein"
                     /protein_id="HDL5594293.1"
                     /translation="MFMVIQLALYNLQTYEVGRNATTIFMTTDKVYTGGSTWTYLFAD
                     ADNKITSVREMNGFGDVEKEFKCGEYKEAVTIASKEDLAKRKTQPRLWSSIYMSPEQN
                     MMWVTDNTSKNLENAKQDAFKQCEKNGGRNCQMILSFSNMCLAFAQGYKDGQGFEDFG
                     YGIVSSLAEENALENCNQKGGSSCLLSAPAVCAIPCDILSNNKCMYDQPQIIIPGKNN
                     NQPINPPANGNGEHWLSN"
BASE COUNT         3353 a         1940 c         2199 g         3183 t
ORIGIN      
        1 taaaaaggcg actattcagc ctaaaaaaaa gtattttagg atgatttctt ctttagataa
       61 aaaggcgact attcagccta aataaaacca acaagcaaaa gcagaaaaga ggtttagtta
      121 tggcgaatgt atcattacgt aacgtgggaa aatcgtatgg tgatgttcat atctctaagg
      181 atattaattt agaaattaac gaaggagaat tcgttgtttt cgttggaccg tcaggttgtg
      241 gcaaatctac gctattacga atgatagcag gtttggaaga tattacgaca ggagaactct
      301 atatcggtgg aaaactgatg aatgaagtag agccttcaaa acgtggtatc ggtatggtgt
      361 tccaatccta tgctctctat ccacatttag acgttgccga aaatatgtct tttggcttaa
      421 agctggcagg tgtaagtaaa gcagagcggg atcaacgagt taaccaagtt gccgaaatct
      481 tacagcttgc ccatttatta gatcgaaaac ctaaagcact ttccggcgga caacgccaac
      541 gggtggctat tggtagaaca ctggtttccc aaccggaagt atttttactc gatgaaccac
      601 tttccaacct tgatgccgca ttgcgtgtac aaatgcgggt agaaatttcc aaattacata
      661 aaaaactaaa ccgcacaatg atttatgtta cgcacgatca agttgaagca atgacattag
      721 cggacaaaat cgtggtatta aatgccggcg gtattgctca agtaggtaaa ccgttagaac
      781 tttatcatta cccggcaaat cgctttgtag cagggtttat cggctcgcct aaaatgaact
      841 ttttaccggt aaaagtgatt gcggtagagc cggaacgggt aaaaattgag ttacctgatg
      901 cgaatcatca taatttttgg attccggttt ccggcgaagg ggtgaatgtg ggagataact
      961 tatctttagg tatccgcccg gaacatttag ttccttcgga tcaaacccaa gtgaccttac
     1021 acggtattgt gcaagttgtg gaattgctcg gaaatgaaac acaaatccac cttgaaatcc
     1081 ctgaaatcaa acaaccaacc ttaatttatc gtcaaaacga tgtggtatta gttaatgaag
     1141 gcgacgatct gaatatcggt atattgccgg aacgctgcca tttatttaag gaagacggta
     1201 cagcttgcaa acgtttgttt gttgaaaaag gggtataaca atttcagttt attactgatt
     1261 ttagagggta ttttcaatct tctaatcaat taataattaa cctaagtaaa atcaaatctt
     1321 aagagaggtt ctattatgaa aaaaacagtc ctagcagttg caatcagtgg tgcaatgttc
     1381 gcagccagtg catcagcggt tgatttccac ggatatgcac gttcaggtat cggttggaca
     1441 tcgggggggg gggagcaatc cgcattcacg gtaaatggtg gtggttcaaa ataccgttta
     1501 ggtaacgaat ctgataccta tgcagaattg aaattaggtc aggaattatt caaaagtggt
     1561 gagaaatcta tctactttga tacaaacctt gcttacggcg gtacgcttca caataatgat
     1621 tggacaccaa caagtccagc actacgtgaa ttaaatgtac agttcaaaaa ctttgcagat
     1681 agtttaccag gtgccacctt atgggctggt aaacgttttt accaacgcca tgatgtacat
     1741 atgaatgact tctattactg ggatatttca ggtccgggtg caggggttga aaatattgat
     1801 ttaggcttcg gaaaactctc tttagcggtt actcgtgata cagagcgtgg aggggcgaat
     1861 acttttggat atactacagt ttataaatta gatcctagca caggtaaaat taaattagat
     1921 aagcagcgta ataaagccga tgtttacaac gatatttttg atgttcggtt agccggtatt
     1981 gagctttgga aagatggttc gttagagtta ggctttgatt acggtaatgc acatgctaag
     2041 aaaggtgcag cccttgaaaa aggagcaacc aaaaacggtt atatggtaac agcggaatac
     2101 actcaaggta acttctttgg tggtttcaat aaatttactg cacaatatgc aaccgactct
     2161 atgacttctt ggaataatgg gcacgcacag ggttcgaaag cagataataa aggtaatatg
     2221 cttcgtttaa tcaaccaagg ggtagtgcaa gcgagtgata aagttgaagt aatgtatgcc
     2281 ttaatctacg aaaaaacaaa actagataat aaacaaggta aaacttggta ctcagcaggt
     2341 attcgcccaa tgtacaaatg gaatgataca atgagtacat tattagaagt tggttatgat
     2401 cgcattaaag atcaagcaac aggcaagaaa aatgacttgg taaaatacac cgttgcacaa
     2461 caatggcagg ctggtaatag catttgggct cgccctgcaa tccgtgtgtt tggtacttat
     2521 gcacgttgga atgataaatt caacacgaaa gctcgtaccg atgccggcta taaagccaaa
     2581 gacggcgagt ttatcaccgg tgttcaattt gaagcttggt ggtaatcatc aaacctttgt
     2641 gtgggtagga ttacctaccc actatttcag cactttatcc tatttcacga tttttagggg
     2701 ttaatatgaa aaaaacgctt ctttcgacag caatattctt cgcccatctt ttggtggtgt
     2761 ctccgagtat agcaaatggc tcggcaggta agtctattca tattaactcg gctgaattag
     2821 ctcaaattca atggcaagat gtgccatttt cacaaaccgt aaaaacagat ctaagcgagc
     2881 aacacaaaca agcatttacc acagcgtttg ccggtattgc cagcccggtt gcagcttatc
     2941 gtattccggc aaatcaaggc acattggaaa ttgaaatcga aagcccggtg atggacaaaa
     3001 atgtttttgt acccacggca gtcgtgttgg atagtcaatt taatgtggca tcaacttacc
     3061 cctcttctga gtttaaatta ttggaagagc gaggactcaa aggtagccgt ttaggggcag
     3121 aacttaattt aacgccggca atgaaccaag attatattta cttgctcatt tataccacgc
     3181 agcaagattt agccaaaacc acgatgatgc cgcatccggc aaaaacctat gcaaaagcaa
     3241 ccggtaaaca accaccagca attaacgata ttgaagtagc acacagttta aaagggcaaa
     3301 ttcacatcaa cgttaccggc tcgaacggca ctaaatttat tggattaccg actgaaattt
     3361 tcagctcaaa caaagcagca acgccggcag ctaaaacggc tataccgttg ccgataaaag
     3421 aaaatccagt tgcagtaaaa acagcagtag ataaagatac ggaagcctat tttaatcagg
     3481 cggtaatgaa agcgattaaa gcaaaagata ttaataaagc gatgaatttg gttaacgagg
     3541 cagaaaaatt agggctgact tctccacgcc aaattttctt aaaaaatgta agttcaaatt
     3601 gatttattgt ttttttcata gatattctcc ttgtcatcgt gcgatggttt attaccatta
     3661 acaccctatc agattatgcc gatagggtgc ttttttacga gtgattatgc gatatgtata
     3721 ggaaggctta tacttgaata aggattcaaa gtataaattc tttaattttt atcagtgata
     3781 tccactttta taacttctac tgtctcacca agctcttcta aaatatcagc cgtttcttca
     3841 ttaagtgcac taccttcgtg ttgtggattt acccaaggtg ttggtaccca atatttgcgg
     3901 ataacttctg cggagaaacc gtgtaataat tcctcattaa agcgttctgc atctaatcgg
     3961 cgaacatagc tgataatttg ttttgcctct tcctcgctag aacctaagcg ttcaatggcg
     4021 gcttggctta atgcgagggc tgattcaaag gtttctcgaa tgtgataatc aacgtggtgc
     4081 tttttgacta aatcaaccgc actttgtcta tcataggttc tcgcaaatac aggtactaag
     4141 gggtattcag atttaatcag ctctacgatt ttctccgttc tttccggatt gcctacgcca
     4201 acaattacgc agtttgcatt ggcgatgcca gatgccctaa gtacatctag tctcgctcca
     4261 tcaccatagt aaagtttaaa accaaaacga gcagcagcac gaatatgatc agtatttgaa
     4321 tcaataaccg atacacttag tcctttggct aataaggctt ggcagactat ttggttaaag
     4381 cgtccaaaac cgatgactaa tacattggct tctaaatctt ccggtaattc aacccctgtc
     4441 atattagtgg attcattttt cgcttttttc tttctcactc cttgcttgat taaaatgaga
     4501 agtggggaaa gcaacattga gacaattacc gcagcggtta aggtagcgtg agtatctggg
     4561 gttaaaatcc cagcggttgc ggcggctgag aatagcacaa aggcaaattc accaccgtga
     4621 gccataatgg tagttcgcac aatagattca ttcagtgtta atcgggtgat agaggcagca
     4681 atgaagattc caaggccttt accgataaca taaactgcta caatcaccaa taaccatagc
     4741 caattattga ggacgaggct gaggtctaat gacattccta cgcccataaa gaataagcct
     4801 aaaagtaaac cacggaaggg ttcaatatca gcttctagtt gatggcggaa agaagactcc
     4861 gaaagcatta ctccggcaag gaatgccccc attgccattg aaagcccact gatttccatt
     4921 aaaagagcgg agcctaatac cacaagtaag gcagcggcag tcatcatttc tcgtactttg
     4981 gctttagaaa taacacggaa aatagggttc atcagccatt ttccactcgc aaccaaaata
     5041 agaacggcaa ctaggctaag accaatagca gaccaattag tactggattc agcatctact
     5101 tggttaggag caagaaaggc aaccgaggct aataatggca caatcgctaa atcttcaaat
     5161 agtaaagttg caacaatacg ttgccctttt ggcgtggaac ttatcccttt atcttccagc
     5221 acttgcatta caatggcagt agaagatagc gtaaaaccca taccggcaat aaatgccact
     5281 tctttggaaa aacctaataa gtaaatgccg gctaaggtta ataaagtacc gcaaatcgca
     5341 acttgtaaga aacctcgccc gaagatggct ttacgcatcg cccaaagcag ttccgggtgc
     5401 atttccaaac caataataaa caaaaacata accacgccaa gttctgccat atgcacaaca
     5461 gcggcagggt cttggaacaa tccaatgccc gatggcccga ttaaacatcc tgcgactaaa
     5521 taacccaata cgcttcctaa accaaggcgt ttaaatagcg gtacaatagt gacgctggtt
     5581 gcaagtaatg cgactgtttt aattaattcc ggactaacta atcctgacat agaattccca
     5641 cctgtataat ataaataaga ttaatgatgt ttttgtgcta aataatctaa atgctggcgg
     5701 ctttgaaacg gcacaataca taactcaccg tttggtgaaa taagttgata aaattgtgga
     5761 tgattaaagc ttccaaatga tgctggtgtt tctgttttta attgtttttc attttgtaat
     5821 ttattgattt tcctgatttt ctcttcttta ttgccgaaac agttatagta actttcgaca
     5881 ttattacgtt catctacaac atatacatta aaactattat cgacattgtc ttcaaagaaa
     5941 aactgtaaaa agccttcact ggcaaattca ctaatttgct gcggaaattc ttttttcttt
     6001 tcattttcgc ttttagcatt ttgcttggtt tttgcaaaag aatttaaatt ttcaaccgct
     6061 tgttgttcat caatttgttt aatgctaaat gtttttttat gaaaaagaaa ctgccaggtt
     6121 tttcctgcta cttttaaagt gctaaattca ttctcttgca gtaaacaacc agtctgaatt
     6181 gtaatacatt tatgaactaa atctgccaca aaatcacgta actcactacg tagatattta
     6241 ctatagcaaa aaacattaac tgattgaggt gaagaatttc cttgataaat tcgattggat
     6301 accaatttta gtgcttttaa aatagcatct tcaccgtcaa aatgttgagt tcgaatttca
     6361 ttccatacat ttcgataaat aatgctcaca ctaccaacta acgttttttg tgccttacca
     6421 aaattaaaca gatcgcttgg ataaactttt tttggtagtt catcgatatg ttcggttgga
     6481 tcttgtacta aattaagcgc tataaccaaa ttgcgaattt cattagggtg atgcatgtca
     6541 tcattggtca cttccggcgc ttgaattggg aaagataagc gcaagtcggt gataaattgt
     6601 cgcaatttct cgatatctaa attagggcta acagtatgta aattagttgc tgcgttaata
     6661 atgccgttaa aataccccca agcaataagc ttaatcgggc ttttattata atggacataa
     6721 cgattttcag agtcataacg acttttaggt gcctgattaa ctaaatacca accgggttgt
     6781 aacgcagatc caactttagc ttcaataaat gtaattgctt tttctgctaa attggacgat
     6841 attttatgat taattaaaga tatttttcct ggaagtgctt caaatacaga ataaagtttt
     6901 cgcattaaaa tatcagtatc atttgtcata atgctcggat taatatgaaa ttttcgagca
     6961 aaatgaatta aatttcgata actttgtagt aaatgatcaa tcagcatatt ctcatgattc
     7021 atcacttgct taattttcca atgttgacgg ttttgaagta attgaatttg tttttctgac
     7081 caagaccatt ggttaaccag ctcgtctaaa tcacgacttc tccagttgtt atttatttct
     7141 ccctcaaccg cttttgcata aaaacagact cgcaagcggt ctaatttcac ccactctttg
     7201 cgtgatctta agtgttctgt taccaattca agcatggcta agtagggatc aaagtgatat
     7261 tccaaagcat tgtcacttag tagttttttc ttaaattctt tggagatgag ctttgtttta
     7321 ggataagtgt gagcgtagca ttcgagcaat aaaattttaa ttgccgattt ataagggtta
     7381 ttaattcctt tgtagagctg ccataagctt gcaccaaaaa attcactggt tgaaaggctg
     7441 gaaaaatcgc cgaaatcaat ccattccgtt aagtcaattt cagggttatt gtgaacattt
     7501 tggtattcat ttttatgtaa atgcaaccag agtaaacgct taccggcaag taaaatagct
     7561 gaacgataaa attcatctaa tagaaaaaaa tgctgtgctg aaccactgtg ttcatcggtt
     7621 acgctactgt tataagtttg gctcttaaat tgttctgggt tcattaaata aatattgatg
     7681 tcgatttgga atgtctttgc ccattcttgc aatttattaa ttttgagctc cattaactta
     7741 tattgttcaa ttgtaaaatg gttcggatag catagccata aatctaaatc agaacagctt
     7801 gtttgggtaa tagtaccggt gctacccatc gaataaagag catcaaagct gggatggggg
     7861 cccaaatgat cggcagagat tgcttcatca aaacggtaag aaaccagaaa ttgtttttga
     7921 taatcagaga gttgaaaatg ccaaatccct tgtggtgcat tttcaacata agccggtaac
     7981 acagggtgat taagatgaat aagcaatgga atgagagaga aaacatgcat aaaatgatga
     8041 ttattagcat tgatagctcg ttctattcgg tatgcattaa gttgatcaat tcgtgcttta
     8101 gtagagttta atttttgggc gaagctcccc tggttcgccc caatggcagc gccttctacg
     8161 gctgttattt tgttggctgt cagggttaat gttttcacgt cagctttcct tactaaagtg
     8221 tgaactgttt agcattttag cggaaaagtg attattatgt aatagggtaa aaaatcggga
     8281 aattaaattt cattccctat tttgcaaaaa atgtctgaaa ttcaaccgct atcttgatag
     8341 aaagagttca gaccagtaat gaaattgtgt aaaataatca agttttagta gcttatttga
     8401 gtgaacaagt gtaagctgaa tcaagtattt ttcagatcaa aatgatgaag gaaacaaaat
     8461 gaaaagagtc gttattacag gattaggtgt aatttccagt atcggtaaca acaaagaaga
     8521 agtgttggaa tcactaaaag caggtaaatc aggcattgaa tttgtgcctg agtttgctga
     8581 agtgggtatg cgtagccaag tggcaggtac gattaaatta aatccggctg agttaattga
     8641 ccgtaaaatc tatcgtttta tgggagatgc tgcggcttac gcttatcttt caatgaaaga
     8701 agcaatcgaa gactcaggct taaccgaaga acaagtttca aacgatcgta ccggtttggt
     8761 gatcggagct ggtacaggct cggcgcacag tcaacttgta gcttgtgatg cagtacgtgg
     8821 cccacgtggt gtgaaagccg ttgggcctta cgcagtaacc aaaacaatgg catcaagtgt
     8881 gtcagcatgc ttggcaacac cttataaaat tcgtggtgta aactattcaa tcagctcagc
     8941 ttgtgcgact tcagcacact gtattggaca cgcgatggag ttaatccaat taggtaaaca
     9001 agatgtggtg tttgcaggtg gtgcagaaga actttcttgg gaatgtgcaa ccgagtttga
     9061 tgcaatgggt gctgtttcaa ctaaatataa tgaaacacca acaaaagcta gccgtgctta
     9121 tgatgctaat cgtgacggtt ttgtgattgc cggtggtggt gcagtggttg tggtggaaga
     9181 gttagaacac gctcttgctc gtggtgccaa aatctatgct gaaattgtgg gctatggggc
     9241 aacctcagac ggttacgata tggtcgcgcc aagtggtgaa ggtgctgagc gttgtatgag
     9301 acaggcgatg gcaactgtaa atggtgaaat cgagtatatt aacgtacacg gcacttctac
     9361 tccagtgggt gatgtaaaag agttaggggc gatccgtaat gtctttggtg ataaaacgcc
     9421 agcaatttca tcaaccaaat caatgaccgg acactcatta ggtgcagcag gtgcgcacga
     9481 ggcaatttat tcattattaa tgttagataa taattttatt gcaccaagca ttaatattga
     9541 aacccttgat gaacaagcac aaggtatgaa tattgtgact gaacgccaag acaaagcatt
     9601 aacaaccgtg atgtcaaaca gcttcggctt tggtggtact aatgcgtgtt tagtgttcca
     9661 acgctattct aagtaacata aaaagagcaa gtgaaagctt gctctttttt cttttgaggt
     9721 aattattata aatttcaaaa taagttcttt gctatttgtt attttgtcat tatttttgac
     9781 cgcttgttct acaatgatta agccactaga tagtgtttat tggcgtggta aagatgtatc
     9841 tgaatttttt gcacgtaaac gtttacctga tacagcggtt caatgcgtaa aagataatga
     9901 attaagctat gtttatggtt attcaactag ctttgtataa tttgcaaact tatgaagttg
     9961 gtcgtaatgc aaccactata tttatgacaa cagataaggt ttatacaggt ggatcgactt
    10021 ggacatatct ttttgctgac gctgataata aaatcacttc tgttcgtgaa atgaatggtt
    10081 ttggtgatgt cgaaaaagag tttaaatgtg gtgaatataa agaagcggta accattgcca
    10141 gtaaagagga cttagcaaag cgtaaaacac agcctcgttt atggtcatca atttatatgt
    10201 cacctgaaca aaatatgatg tgggtgactg ataatacgtc taaaaattta gaaaatgcga
    10261 agcaagatgc gtttaaacag tgtgaaaaga acggtggtcg taattgccaa atgatcttat
    10321 cgtttagtaa tatgtgcctt gcttttgcac aaggttataa agatggtcaa ggcttcgagg
    10381 attttgggta tggtatcgtt agtagtcttg ctgaagaaaa tgcattagag aattgtaatc
    10441 aaaaaggtgg ttcaagttgt cttctttctg cccctgccgt atgtgctatt ccctgtgata
    10501 tattgtcgaa caacaaatgt atgtacgatc agcctcaaat tattattcca ggtaagaata
    10561 ataaccaacc gattaatcca ccagctaatg gcaacggtga gcattggttg agtaattaaa
    10621 tcattttagt aaaaagtgcg gaaacgcact tttttattgc ctgcaagcgg tcatt
//
LOCUS       DANLZD010000093        10428 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.093, whole genome shotgun sequence.
ACCESSION   DANLZD010000093 DANLZD010000000
VERSION     DANLZD010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10428
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.093"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            57..1331
                     /gene="nadR"
                     /locus_tag="PXE26_001727"
     CDS             57..1331
                     /gene="nadR"
                     /locus_tag="PXE26_001727"
                     /EC_number="2.7.1.22"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional transcriptional
                     regulator/nicotinamide-nucleotide
                     adenylyltransferase/ribosylnicotinamide kinase NadR"
                     /protein_id="HDL5594294.1"
                     /translation="MTDFAYLQQKRKQLKLKVNDICEQAGVTRAYFNQLVSGKIKNPS
                     ANKLKALHSVLDIVEDSNQRSGVIFGKFYPIHTGHINMIYEAFSKVDVLHVIVCTDSE
                     RDLRLFQESKMKRMPTNEDRLRWVQQIFKYQQKQIFIHHLVEDGIPSYPNGWEDWSGR
                     VKALFEEKSINPTIVFSSEIQDKESYEKYLNLEVQLVDPTRESFNISATQIRNNPFQY
                     WRFIPKEVRPFFVKTIAILGGESSGKSVLVSKLANVFNTTSAWEYGREFVFEQLGGNE
                     QAMQYSDYPQMVLGHQRYVDYAMKHAHKVAIIDTDYITTQAFCIQYEGKAHPFLDSMI
                     REYPFDVTILLSNNTKWVADGLRSLGSKKQRQQFQHLLKKLLEKHHIPYIKIESPSYL
                     DRYNQAKEVVEAILNEEPIPLQFKQYNIHEFE"
     gene            1349..2041
                     /locus_tag="PXE26_001728"
     CDS             1349..2041
                     /locus_tag="PXE26_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL5594295.1"
                     /translation="MILFAGDPHGSYEHLYPILQQQTEEVALVILGDLQLTTPDELDR
                     LSQYCDIWFIHGNHDSKTVAAFDAIWNSSWKERNIHGKVVDIQGIKIAGIGGVFRGHI
                     WMPPNRPMFFDPIHFCQYSAPEKIWRGGIPLRHRSSIFPSDFEALENEKADILITHEA
                     PKPHPQGFSVINQLARKLGASKIFHGHYHDNFNYGNLNVSRECAIYNIGFRSLADING
                     NYLILGVDDREK"
     gene            2174..2896
                     /gene="arcA"
                     /locus_tag="PXE26_001729"
     CDS             2174..2896
                     /gene="arcA"
                     /locus_tag="PXE26_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator ArcA"
                     /protein_id="HDL5594296.1"
                     /translation="MKIPQILIVEDELVTRNMLKSIFEGEGYQVFQASNGEEMHSVLS
                     TNEINLVLMDINLPGKNGLILAREIRENMKLPLMFLTGRDNEIDKILGLEIGADDYIT
                     KPFNPRELTIRARNLLQRTMIDKENDVVKEQSEIESYRFNGWILDINSHSLISPEGEV
                     NKLPRSEFRALLHFCQHPGKIQTREDLLKKMTGRELKPHDRTVDVTIRRIRKHFEDHP
                     NTPEIIVTIHGEGYRFCGNIEP"
     gene            2916..3434
                     /locus_tag="PXE26_001730"
     CDS             2916..3434
                     /locus_tag="PXE26_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HDL5594297.1"
                     /translation="MKKLTIVALTCLFSTHLLAAPVGNTFTGIGVGVDVTTTKYKVEG
                     VKGKDSTGPALVVDYGIEQGNNFVGVVQGKAKVGSTKVFSDVKQKNKYTIAYQQGYRV
                     GSDLLPYVKVDASSSKIGNETYRGFGFGAGAKYAVSSDVELGAEYTRDNLKRSGTKLK
                     GNAFTANATYRF"
     gene            complement(3512..4741)
                     /gene="serA"
                     /locus_tag="PXE26_001731"
     CDS             complement(3512..4741)
                     /gene="serA"
                     /locus_tag="PXE26_001731"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HDL5594298.1"
                     /translation="MAKISLDKSKIKFLLLEGVHQNAIDVLLAAGYTNIEVHKKALDG
                     QELIDAIKDAHFVGIRSRTFLTEEVLAQAPKLIAIGCFCIGTNQVDLNAAKRRGIPVF
                     NAPFSNTRSVAELVLAEMILLMRKVPTANAEVHRGVWNKSAAGANEVRGKKLGIVGYG
                     HIGSQLSILAEAIGMQVYFYDVENKLPLGNAQQVPTLEHLLSTCDMISLHVPEIDSTK
                     NLMSAERIAQLKEGSVLINAARGTVVDLDALAARIEDGSLRGAAIDVFPEEPASINDP
                     FVSPLCKFDNVILTPHIGGSTSEAQANIGTEVANKFVKYSDNGSTVTAVNFPEVSLPL
                     HTNTKRLLHIHENRPGMLNQINQIFVESNVNIAAQYLQTDAAIGYVVIDVESDNVDEA
                     LQRLKAIEGTIRARVLY"
     gene            complement(4778..5437)
                     /gene="rpiA"
                     /locus_tag="PXE26_001732"
     CDS             complement(4778..5437)
                     /gene="rpiA"
                     /locus_tag="PXE26_001732"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HDL5594299.1"
                     /translation="MDQQEMKKIAAQAALKFVKPDTIVGVGSGSTVNCFIDALASMKD
                     EIKGAVAASKASEQRLRDIGIEVFSANEVTELDVYIDGADEITPQGAMIKGGGAALTR
                     EKIVSSLAKKFICIVDKSKQVDVLGSTFPLPVEVIPMARSYVARQLVALGGSPEYREG
                     VVTDNGNVILDVHNFKIMEPLKMEHTINNIAGVVTNGIFAQRFANVTIVGTPEGAVIL
                     E"
     gene            complement(5582..6916)
                     /gene="glmM"
                     /locus_tag="PXE26_001733"
     CDS             complement(5582..6916)
                     /gene="glmM"
                     /locus_tag="PXE26_001733"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HDL5594300.1"
                     /translation="MARKYFGTDGVRGEVGKFPITPEFALKLGWAAGKVLATQGTKKV
                     LIGKDTRISGYMLESALEAGLTAAGLSAVFVGPMPTPAIAYLTRTFRAEAGIVISASH
                     NPYYDNGIKFFSSVGEKLPDEIEEAIEAMLDKPMDCVDSANLGRASRINDAAGRYIEF
                     CKGTFPSELSLEGYKIVVDCANGATYHIAPNVMRELGAEVLEIGTKPDGLNINEKCGA
                     TDIKALQKVVVEAGADVGLAYDGDGDRLIMVDHLGNKVDGDQILFILAREALRSGKLQ
                     GGVVGTLMSNMSLELALKELAIPFSRANVGDRYVLEQLKEKGWKLGGENSGHIIVLDK
                     NTTGDGIIASLQVLAAMASHKLSLNDLAKAVPLFPQVLLNVRFEKGAANPLESNEVKA
                     VAADVEKRLAGKGRILLRKSGTEPLIRVMVECEDAVLAQSCAEEIVEAVKRN"
     gene            complement(6942..8474)
                     /gene="ilvA"
                     /locus_tag="PXE26_001734"
     CDS             complement(6942..8474)
                     /gene="ilvA"
                     /locus_tag="PXE26_001734"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HDL5594301.1"
                     /translation="MMNETQHSQSAIDYLRSILSSNIYDLAQVTPLQKMEKLSERLGN
                     SIFIKREDRQPVHSFKLRGAFAMISNLSKAQKEAGVIAASAGNHAQGVALSAKHLGLR
                     ALIVMPQNTPAIKVDAVRGYGGEVLLYGANFDEAKAKAIELSTELGMTFIHPFDSPAV
                     IAGQGTIGLELVQQKPDLDYVFIPVGGGGLIAGIAVLIKQVMPNIKVIGVESKDSACL
                     YHALKQGQPTDLERVGLFADGIAVKRIGDETFRLCQQYVDDVVLVDNDEICASMKLIF
                     ENVRAISEPSGATSLAGLKKYVKEHQLQDKNLACILSGANVNFHTLRFVSERCEIGEK
                     REALLAVTIAEQKGSFLKFCEILGNRAVTEFNYRHSDDKQACIFVGVRISGSAEKVEI
                     IKDLQQNGYDVADLSDDDIAKTHIRYMVGGRASSIQYEQLYSFEFPEQKGALLKFLQM
                     LTNWDISLFHYRAHGADYGDILAAFALNRGDEVELNRHLEQLGYRFQNVSESPAYQYF
                     LK"
     gene            complement(8735..9328)
                     /gene="slyD"
                     /locus_tag="PXE26_001735"
     CDS             complement(8735..9328)
                     /gene="slyD"
                     /locus_tag="PXE26_001735"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDL5594302.1"
                     /translation="MNITKDLVPSIAYQVRTQEGVLVDEAPVNQPLEYLHGHNNLVEG
                     LEKALEGKAVGDVFEVRVKPEEGYGEYNDNMVQRVPKDVFMGVDELEVGMRFIADTDL
                     GPLPVVITEVDGDEVVVDGNHMLAGQELLFSVEVVGIREATAEEIAHGHVHGGHEHGC
                     GCGGHDHHHDHDGCCGGHDHDHHHHHGHGGCGCGGHH"
     gene            complement(9431..9571)
                     /locus_tag="PXE26_001736"
     CDS             complement(9431..9571)
                     /locus_tag="PXE26_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594303.1"
                     /translation="MKKLIKVCGLISATIFLSGCLVTSVVGGVVGTAVDVVDTVTPDI
                     ID"
     gene            complement(9643..10329)
                     /gene="aqpZ"
                     /locus_tag="PXE26_001737"
     CDS             complement(9643..10329)
                     /gene="aqpZ"
                     /locus_tag="PXE26_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HDL5594304.1"
                     /translation="MKKYFAEFFGTFWLVFGGCGSAVLAAGIPELGIGYAGVSLAFGL
                     TVLTMAYAVGHISGGHFNPAVSIGLLVGGRFNAKDLVPYIIAQVIGAIAAGAVLYTIA
                     SGVPTFDATAGFAGNGYGEHSPHGYSLTAALLIEVVLTAFFLIIIMGATDKRAPAGFA
                     PIAIGLALTLIHLISIPVTNTSVNPARSTGVALFQGSWAIEQLWLFWVAPIVGAIIGA
                     VVYRFIAEEK"
BASE COUNT         3138 a         2308 c         1967 g         3015 t
ORIGIN      
        1 tattcaaatg ctacatttta ctatatgata atcatcaaaa aatcgaggga atcattatga
       61 cagattttgc ttatcttcaa caaaagcgca aacagcttaa actcaaagtg aatgatattt
      121 gtgaacaagc tggggtaacc cgagcttatt ttaatcagtt agtaagcgga aaaatcaaaa
      181 atccaagcgc caataagctt aaagccttgc attccgtttt agatatcgta gaagatagca
      241 accagcgttc cggggttatt tttggcaaat tctatcctat tcacacaggt catattaata
      301 tgatctatga agcatttagt aaagtagatg ttttacatgt tattgtttgt accgattctg
      361 aacgggattt acgtcttttc caggaaagta aaatgaaacg aatgccgaca aatgaagatc
      421 ggctacgctg ggtacagcaa atttttaaat accaacaaaa acagatcttt attcaccatt
      481 tagttgaaga cggtattccg agctatccaa atggctggga agattggtct ggtcgtgtta
      541 aagcgctatt tgaagaaaaa agcattaatc ctactattgt ttttagtagt gaaattcaag
      601 ataaagaatc ttatgaaaaa tatttgaatc tagaagttca acttgtcgat cctactcgtg
      661 aatcctttaa tatttcagca acacaaattc gtaataatcc ttttcaatac tggcgcttta
      721 ttccgaaaga agttcgtcct ttctttgtta aaactattgc gattttaggt ggtgaaagca
      781 gtggtaaatc agtgttggtg agcaaattag cgaatgtatt taacactacc tctgcttggg
      841 aatatgggcg tgagtttgtg tttgagcaac ttggtggcaa tgaacaagca atgcaatatt
      901 ccgactatcc gcaaatggtg cttggacatc aacgctacgt tgattatgcc atgaaacatg
      961 ctcataaagt ggctattatt gataccgatt acatcacaac tcaagcgttc tgtattcagt
     1021 atgaagggaa ggctcacccg tttctggatt caatgatccg cgaatatcct tttgatgtga
     1081 cgattttact ttctaacaat acaaaatggg tagccgatgg tttacgcagt ttaggatcga
     1141 aaaaacagcg tcaacagttt caacacctac tgaaaaaact actagaaaaa caccatattc
     1201 cttatattaa aattgaatct ccaagttatt tggatcgcta caatcaagcc aaagaggtgg
     1261 tagaagctat tttaaatgaa gaaccaatcc cattacagtt taagcaatat aatattcacg
     1321 aatttgaata actgccacag gaaataacat gatacttttt gcaggcgatc cacacggtag
     1381 ctacgagcat ctttatccga ttctacaaca gcagacggag gaggtagctt tagttattct
     1441 aggcgatctt caattgacta ctcctgatga attagatcgg ctttcgcagt attgtgatat
     1501 ttggtttatt catggtaacc atgacagtaa aaccgttgct gcctttgatg ctatttggaa
     1561 tagtagctgg aaagaacgca atattcacgg taaagtagtt gacattcaag gaataaaaat
     1621 tgcaggtatt ggaggggtct tccgaggtca tatttggatg ccgcccaatc gtccaatgtt
     1681 ttttgatccc atccattttt gccaatactc tgctccggaa aaaatttggc gtggtggtat
     1741 tccattaagg caccgctctt cgatcttccc ttctgatttt gaagcattgg aaaatgaaaa
     1801 agccgatatt ttaattacac acgaagcacc aaagccacac cctcaaggct tctctgtaat
     1861 caaccagcta gcaagaaaat taggggcgag caaaattttc catggccact accatgataa
     1921 ttttaattat ggcaatctaa atgtcagcag agaatgtgct atttataata tcggctttcg
     1981 tagcctagcg gatattaatg gaaattatct aattttaggt gttgatgatc gagagaaata
     2041 gccaaaaatt tgactgaatt aaacaaattg tcattttacc cttcccattc ataaatttat
     2101 aagtaaaatg cgagaaattt gtaacataaa cgttattaaa cagaatttat aaattaaatc
     2161 agaggtttaa aagatgaaga tcccacaaat cttaattgtt gaggatgagt tagtaacaag
     2221 gaatatgctg aaaagcattt ttgaaggaga aggatatcag gtatttcaag catctaacgg
     2281 cgaggaaatg cactctgttc tgagtacaaa tgaaatcaat cttgtgctaa tggacattaa
     2341 cttaccggga aaaaatggat taattctcgc ccgagaaatt cgagagaata tgaagctacc
     2401 attaatgttt ttaaccggtc gcgacaatga aattgataag atcctcggtt tagaaatagg
     2461 tgccgatgac tatatcacta aaccgtttaa tcctcgagaa ttgactatcc gagcgagaaa
     2521 tttattgcaa cgaacgatga tagataaaga aaacgacgtt gtaaaagagc aatctgaaat
     2581 tgaaagctat cgctttaacg gttggatctt agacattaac agtcatagtt taatctcacc
     2641 agaaggtgag gtaaataaat taccacgtag tgaatttagg gctttattac atttttgcca
     2701 acatcctgga aaaattcaaa cacgtgaaga tttattgaaa aaaatgaccg ggcgggaact
     2761 aaaacctcat gatagaaccg ttgatgttac tattcgccgt attcgtaaac attttgaaga
     2821 ccaccccaat accccagaaa ttattgtcac cattcacggt gaaggctacc gtttctgtgg
     2881 taacatcgaa ccttaatcaa gataggagta attttatgaa aaaattaact attgtcgcat
     2941 taacttgctt attttctacc catctattag ccgctcctgt cggaaataca tttactggca
     3001 tcggtgtcgg tgtagatgta actacaacaa aatacaaagt tgaaggagta aaaggcaagg
     3061 attccacagg tccggcatta gttgtcgatt atggtattga gcaaggcaat aactttgtag
     3121 gcgttgtaca aggaaaagca aaagtaggta gtacaaaagt atttagcgat gtaaaacaaa
     3181 aaaataaata tactatagct tatcaacaag gttatcgtgt tggatccgat ttattacctt
     3241 atgtaaaagt agatgccagc tcaagcaaaa tcggtaatga aacctatcgt ggctttggtt
     3301 tcggtgctgg tgcaaaatat gcagtttcaa gcgatgttga attaggtgca gaatacactc
     3361 gcgataattt aaaacgtagc ggcacaaaat taaaaggtaa cgctttcacc gcgaatgcaa
     3421 cttatcgttt ctaatcttag cggtaaagtt ttctgaaaaa ataaccgctt gtaacacaaa
     3481 agagcctgaa gtgattcagg ctctttgcct tttaatataa tactcgggct cgaatcgtgc
     3541 cttcgatcgc ttttaaacgt tgtaatgctt catcaacatt gtcgctctct acatcaatta
     3601 caacataacc gatagctgca tcggtttgta aatattgagc ggcaatattc acatttgatt
     3661 ccacaaaaat ctggttaatt tgatttaaca tacctgggcg attctcgtga atatgtaata
     3721 aacgtttggt attagtatga agcggtaagg atacttcagg gaaattcact gccgtcacgg
     3781 ttgaaccgtt atctgaatat ttcacaaatt tattggcaac ttcggtgccg atatttgcct
     3841 gagcttcaga ggttgaacca ccaatatgtg gcgttaaaat cacgttatca aacttgcaca
     3901 atggtgacac gaacgggtca ttaattgatg ccggttcttc cggaaatacg tcaatcgccg
     3961 caccacgcaa tgagccgtct tcaatccgag cggctaatgc gtctaaatcg accactgtac
     4021 cacgagcggc attaattaac accgagcctt cttttaattg agcaatgcgt tctgcactca
     4081 ttaggttttt agtcgagtcg atttccggaa cgtgtagtga aatcatatcg caggttgaaa
     4141 gcaaatgctc taatgtcggc acttgctgtg cattaccgag tggtagtttg ttttcaacat
     4201 catagaaata aacctgcata ccaatggctt cggcaagaat actaagctgt gaaccgatat
     4261 gaccatatcc cacaatacct aatttcttgc cacgtacttc gtttgcacct gctgccgatt
     4321 tattccacac cccacgatgc acttccgcat ttgcagtcgg gactttacgc attaataaaa
     4381 tcatctctgc cagcactaat tctgccaccg agcgggtatt tgagaacggt gcattgaata
     4441 ccggaatacc tcgtcttttc gccgcattca aatcaacttg gtttgtaccg atacagaaac
     4501 aaccaatcgc aattaatttc ggagcttgag ccagtacttc ttcggttaaa aaagtacgcg
     4561 agcgaatacc aacaaagtgt gcatctttaa ttgcatcaat taattcttga ccgtctaatg
     4621 cttttttatg cacttcaata ttggtataac cagccgctaa gagtacatca attgcgtttt
     4681 gatgtacgcc ctcaagcaga aggaatttga tcttggattt atccaaagaa attttagcca
     4741 ttttttgctc ctaagtattt gtatttgcaa taataaatta ttctaaaata actgcacctt
     4801 caggtgtgcc gacaatggtt acattggcaa aacgttgtgc aaaaataccg ttagtcacca
     4861 cgcctgcaat attattaatg gtatgttcca ttttcaacgg ctccataatt ttaaagttat
     4921 gtacatctaa aatcacattg ccgttatcag tgaccacgcc ctcacggtat tccggcgaac
     4981 cacctaaggc tacgagctga cgagccacat aagaacgagc cattgggatc acctccaccg
     5041 gcagagggaa agttgaaccc agcacatcaa cttgtttgga tttatccaca atgcagataa
     5101 attttttcgc taatgaactc acgattttct cacgggtaag tgctgccccg ccacctttaa
     5161 tcatcgcccc ttgtggcgtg atttcatcag ctccgtcaat atacacatct aattccgtca
     5221 cttcattggc actgaatact tcaatgccga tatcacgcaa acgctgttcc gaggctttag
     5281 aggcagcaac cgctccttta atctcatctt tcattgaagc aagggcatca ataaaacagt
     5341 ttacggttga accacttccc accccaacaa tagtgtccgg ttttacaaat tttaatgcag
     5401 cttgtgccgc aatttttttc atttcttgtt gatccatttt tacctccact tgtagggcaa
     5461 atcatcattt gcccacttcg gcaaggcgaa aaaaattttc gccctactac atctattcta
     5521 cacatatatg taacaagcgg tcatatttgg caaatttttt accaaaaacg accgcttgtc
     5581 attagttacg ttttactgct tcaacaatct cttccgcaca gctttgagca agtacagcat
     5641 cttcgcactc caccatcact cgaattaatg gctcagtgcc tgatttacgc aataaaatac
     5701 gccctttgcc tgccaagcgt ttttccacat ctgccgctac cgctttcact tcgttacttt
     5761 caagcggatt tgccgcccct ttctcaaagc gaacatttag cagaacttgc gggaacagag
     5821 gcactgcttt tgccaaatca ttcaggctta atttgtggct tgccattgct gctaatactt
     5881 gcagtgaggc aataatacca tcaccggtgg tgtttttatc taacacgata atatgcccgg
     5941 agttttcgcc acccagtttc cagccttttt ctttaagctg ctctagtaca tagcggtcac
     6001 ccacgttagc acgagagaat ggaatggcta gctcttttaa agctaattcc aagctcatat
     6061 tactcattaa tgtaccgact acaccgcctt gtaatttgcc tgaacgtaga gcttctcggg
     6121 ctaaaataaa tagaatttgg tcgccatcaa ctttattgcc taagtgatcg accataatca
     6181 aacggtcgcc atcaccatcg taagctagac caacatccgc acctgcttct accaccactt
     6241 tttgaagtgc tttaatatcc gttgcaccac atttttcgtt gatgtttaaa ccgtccggct
     6301 tagtaccgat ttcaagcact tctgccccta gctcacgcat tacattcggc gcgatatggt
     6361 aggttgcacc gttggcacaa tccaccacaa ttttatagcc ttcaaggctt agttcagacg
     6421 ggaaagtgcc tttacaaaac tcgatataac gtcctgcggc atcattaata cgactggcac
     6481 gacctaaatt tgctgaatct acgcaatcca taggcttatc aagcattgct tcaatcgctt
     6541 cttcaatttc atcaggtagt ttttcaccaa ccgacgagaa gaatttaatg ccgttatcgt
     6601 aataaggatt gtgagaggca gaaatcacaa tgccggcttc cgcacggaaa gtacgggtta
     6661 aataagcaat tgccggagtc ggcatcggac caacgaatac tgctgataaa ccggctgcgg
     6721 ttaaaccggc ttccagagcc gattccaaca tataaccgga aatacgggta tctttaccga
     6781 ttaatacttt tttcgtgcct tgggttgcca acactttacc tgctgcccaa ccgagtttta
     6841 atgcaaattc aggtgtaatt ggaaatttac ctacttcacc acgcacaccg tctgtgccga
     6901 aatatttacg agccattcta attcctaaga ttgataaaaa tttactttaa aaaatattga
     6961 tatgccggac tttcgctcac attttggaag cggtaaccta gctgttctaa atgtcggttt
     7021 aattctactt catcgcctct gtttaatgca aatgcggcaa gaatatcgcc ataatcggct
     7081 ccgtgagctc ggtaatggaa taacgagata tcccagttag tcagcatttg taagaatttt
     7141 agcaatgccc ctttctgctc tggaaattca aagctataga gttgctcata ttgaatggag
     7201 cttgctctac cgcctaccat ataacgaata tgggttttgg caatatcatc gtccgataaa
     7261 tctgccacat catagccgtt ttgttgcaga tctttaataa tctctacttt ttctgccgag
     7321 cctgaaattc gcacccccac aaaaatacag gcttgtttat catcggaatg gcgatagtta
     7381 aattccgtta ccgcacggtt gcctaaaatc tcgcagaatt ttaagaaact acctttctgt
     7441 tcagcaatgg tgactgccaa taaagcttca cgtttctccc cgatttcaca acgctctgac
     7501 acaaaacgta aggtgtggaa attcacattc gccccggaaa gaatgcaagc taagttttta
     7561 tcttgtaatt gatgctcttt cacatatttt ttcaaaccgg caagggaagt tgccccggac
     7621 ggctcggaaa tcgcacgcac attttcaaaa atcaacttca ttgaggcaca gatttcatca
     7681 ttatccacca acaccacatc atcaacatat tgctgacaca ggcggaaagt ttcatcgcca
     7741 atgcgtttta ccgcaatacc gtcagcaaaa agcccaaccc gttctaaatc ggtcggttgc
     7801 ccttgcttta aggcgtgata taagcaagca gaatctttag attcgacccc aatcacttta
     7861 atattcggca tcacctgctt aattaaaacc gcaatgccgg caattaagcc gccaccgccc
     7921 actggaataa atacataatc taaatccggc ttttgttgca ccagttctaa gccgattgtg
     7981 ccttgccctg caatcactgc cgggctgtca aacgggtgaa tgaaggtcat acccaattcg
     8041 gtggaaagct caatcgcttt cgccttagct tcatcaaaat tcgccccata aagcaacact
     8101 tcaccaccat agccacgtac cgcatcaacc ttaattgccg gtgtgttttg cggcattaca
     8161 atcaaggctc ttaaacctaa atgtttggca gaaagtgcca ccccttgtgc gtggttgcct
     8221 gctgaagccg caatgactcc agcctctttt tgtgctttgg ataaatttga gatcatcgca
     8281 aaagcacctc gcaatttaaa gctgtgaacc ggctgtcggt cttcacgttt gataaaaata
     8341 gagttgccta accgctcaga cagtttttcc attttctgta aaggggtcac ttgcgctaag
     8401 tcataaatat ttgagcttaa aatcgagcgt aaatagtcga tagcggattg ggaatgttgt
     8461 gtttcgttca tcattttgaa aggttattta ttgttagatt gagataaaga cattggtaaa
     8521 tttccaagga aaattgaccg cttgtttggt tatttagcaa tggctttaac agggaatatt
     8581 tcctctcgcc cgtttgcggg agagagacag cttaaaattt cgttcagaaa ttttaagcag
     8641 agagagggga aaccttggat atccccctct ccctccgcaa atcttcgatt tgctccaccc
     8701 tctcccgcaa gcggggagag gggaaatcac aaagttagtg atgaccaccg caaccacagc
     8761 caccgtgtcc gtgatgatgg tgatgatcgt ggtcgtgacc gccgcagcaa ccatcgtgat
     8821 cgtgatgatg atcgtgccca ccacaaccgc aaccgtgttc gtgtccgccg tgaacgtgtc
     8881 cgtgtgcgat ttcttccgct gtcgcttcac gaatgccaac cacttccaca gagaaaagta
     8941 attcctgacc ggctaacata tggttaccgt ccaccacaac ttcatcgcca tctacttcgg
     9001 taattaccac cggtagcgga cctaaatccg tgtccgcaat aaaacgcata cccacttcta
     9061 attcatcgac gcccataaat acatctttcg gtacacgttg aaccatatta tcgttgtact
     9121 cgccgtaacc ttcttccggt ttcacacgca cttcaaacac atcgcctaca gctttgcctt
     9181 caagggcttt ttctaagcct tctaccaagt tgttgtgacc gtgtaaatat tctaacggtt
     9241 ggtttaccgg tgcttcatct actaatacgc cttcttgagt acgcacttga tatgcaatgc
     9301 ttggcactaa atcttttgta atgttcatat tgaatccttt aattcatcgg ttttataaaa
     9361 tagcaagcca ttgtaacgct ttattttata tttgcaatct atctggaaat tttaaccgct
     9421 tgtcagtaaa ttagtcgata atatcagggg ttacggtgtc taccacatca actgcggttc
     9481 ccaccactcc accaaccacc gaagttacca aacaaccact taggaaaata gttgctgaaa
     9541 tcagcccaca tactttgatt aattttttca ttttaaaatc ctttcaaaaa caaaaaacag
     9601 ccctaatcaa gactagagct gcatcatatt tattcgctta aattattttt cttcagcgat
     9661 aaagcgataa actaccgcac cgataattgc accgacaatc ggagcaaccc agaacaacca
     9721 taattgctca atcgcccagc tgccttggaa taacgctaca ccggttgaac gtgccgggtt
     9781 tactgaggta ttggttaccg gaatgctgat taagtggatt aaggttaaag ccaaaccaat
     9841 agcaatcgga gcgaaacctg ctggagcacg tttatcggtt gcacccataa tgatgattaa
     9901 gaagaatgcc gttaatacca cttcaattaa taatgctgct gttaagctat agccgtgtgg
     9961 cgaatgctca ccataaccgt tgccggcaaa gcctgctgta gcatcaaaag tcggaacacc
    10021 tgaagcaatg gtgtataaca ctgcaccggc agcaatcgca ccgattactt gggcaatgat
    10081 ataaggcact aaatctttag cgttaaaacg accgccgact aataaaccga ttgaaaccgc
    10141 cgggttgaag tgaccacctg aaatatgacc gactgcatac gccattgtta atacggttaa
    10201 accgaaggct aacgaaacgc ctgcataacc gattcctaat tcaggaatgc ctgctgctaa
    10261 aactgcactg ccgcaaccac caaacactaa ccaaaatgtc ccgaaaaact cagcaaaata
    10321 ttttttcatt ttttatcctt accctaaagg gtgaatcaca cataagtgta ttaactttcc
    10381 gaatgctata aaacatagcc aataaaatat gagtatacta aaaaaagt
//
LOCUS       DANLZD010000094        10417 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.094, whole genome shotgun sequence.
ACCESSION   DANLZD010000094 DANLZD010000000
VERSION     DANLZD010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10417
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.094"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..1861
                     /locus_tag="PXE26_001738"
     CDS             <1..1861
                     /locus_tag="PXE26_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HDL5594305.1"
                     /translation="QKLHQINNRLKIVATDSQWNTPLAIFWTLVLCLPSTLMFLAGFV
                     AITYISFENPQEVWTWGLKMAIYWLYFAFLVAMLRPHGIGHIHFNMPQKSNEIFRNIL
                     KRSVWIIALLLNTSIFTNLEMGISYDMLGQTMTIFVLILMIWMIVPAFRQAISTYENV
                     TTEEKKESKSILLTIVKLVLLLAPIILIILIALGYYYTALVIIEHLVDSYFAIITWII
                     IRNILYRAFSISSRRLAYRRLQEKREAAEAKTRAKAEQNDENPDGVELPFELKEDSIA
                     VSEVKNQMLKLTDFVLWIGLFVLLYWVWSDLITVALYLDGVTLWQQSVTTEAGIVMES
                     ITLLNLLTAILIIVVMVVLIRNLSGLLEALIFSHFKLSQGTPYTITTLLTYLIIALGA
                     IFAFGTLGMSWSKLQWLLTALSVGLGFGMQEIFANFVSGIIILFERPMRIGDTITIGT
                     YSGTVSKIRIRATTLVDFDGKEVIVPNKAFVTERLVNWALSSTATRIIVQVGVAYGSD
                     LELVKRLLLQVAEENPKVLKDPQPRAYFLTFGASTLDHELRAYVNDLSDRNPTIDALN
                     TRIHQLFNEHNIDIAFNQLDVYIKNNDTQDEIKVDSKRFEFERPNNITAKEKE"
     gene            1864..2946
                     /gene="aroC"
                     /locus_tag="PXE26_001739"
     CDS             1864..2946
                     /gene="aroC"
                     /locus_tag="PXE26_001739"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HDL5594306.1"
                     /translation="MAGNSIGQLFKVTTFGESHGIALGCIVDGVPPNMALSEADLQPD
                     LDRRKPGTSRYTTPRREDDEVQILSGVFEGKTTGTSIGLIIKNGDQRSQDYGDIAEKF
                     RPGHADYTYQQKYGIRDYRGGGRSSARETAMRVAAGAIAKKYLREQFGIEVRGYLSQI
                     GNIKIDPKTVENIEQIDWHAVNSNPFFCPDPVAIEGFDALIRELKKEGDSVGAKLTVI
                     AERVPVGLGEPVFDRLDADLAHALMSINAVKAVEIGDGFAVVEQRGSQHRDEMTPQGF
                     LSNHAGGILGGISSGQPIIAHIALKPTSSITIPGRSVNKNNEAVEVITKGRHDPCVGI
                     RAVPIAEAMMAIVLLDHLLRFKAQCR"
     gene            2965..3792
                     /gene="mepA"
                     /locus_tag="PXE26_001740"
     CDS             2965..3792
                     /gene="mepA"
                     /locus_tag="PXE26_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-insensitive murein endopeptidase"
                     /protein_id="HDL5594307.1"
                     /translation="MKLLKTLLVSSLAFTATALNATQWEKIKTPVQGKAQSIGGYSNG
                     CIIGAQPLALKGEGYQVIRSARNRYYGHPQLLDYLTHLGKKTKAAGVPTILIGDMGMP
                     AGGRFASGHASHQTGLDADIWFKFGPMDDETARNPAGLATIMVNRSTERVDDSLWNQH
                     HTNLVKLAATDPRVDRIFVNPAIKVKLCQTAGNDRAWLRKIRPWYGHDSHFHVRLTCP
                     ADAASCENQALVPAGDGCGEELYSWFEPKEASGTPKAKVLPTAPVQCQMILSEQGLN"
     gene            3865..5784
                     /locus_tag="PXE26_001741"
     CDS             3865..5784
                     /locus_tag="PXE26_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HDL5594308.1"
                     /translation="MRLFVAEKPSLARAIADVLPKPHTKGDGFIQCGEHDTVTWCIGH
                     LLEQAEPDVYDERFKMWRMEHLPIVPEQWKLIPKKETLKQFKVVEKLIKKADVLVNAG
                     DPDREGQLLVDEVFGYLNLSAERKSQIQRCLVSDLNPNAVSRAIEKLQKNSDFIPLAT
                     SALARARADWLYGINMTRAYTLQGRWAGYKGVLSVGRVQTPVLGLIVRRDLEIEHFVP
                     KDYFEVLAQIVVPETQERFKAQWQPSKACEDYQDEDGRVLSRPLAENVVKRITDQPAT
                     VTEYQNKIEKETAPLPYSLSVLQMEAAGRYGLSAQAVLDICQKLYETHKLITYPRSDN
                     RYLPTEHFNDRFKVMAAIAHHLPEYQQKPEVIDATIRNRCWNDKEVEAHHAIIPTARQ
                     GTVHLTENEKRVYQLIARQYLMQFCPDAEYRKSKIGLEIAGGSFVAQARNLVIAGWRA
                     LLGKEDSLDDAEPLLPIVKKGQILHCEKGEIVSKKTQPPRHFTDRSLLSAMTGIARFV
                     QDKELKKILRETDGLGTEATRAGIIELLFKRGFLIRKGKNIHSTEAGRILIQALPDSA
                     TQPDMTAHWEMQLNQISKKETSYQQFMFDLNQQLPHLLQSPNRQVLQNLAKITPLASG
                     NKPRYFKKRTQTAEN"
     gene            5890..6216
                     /gene="secG"
                     /locus_tag="PXE26_001742"
     CDS             5890..6216
                     /gene="secG"
                     /locus_tag="PXE26_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HDL5594309.1"
                     /translation="MLINVLTIVYLVVAVLLIAFVLMQQGKGADAGASFGAGASATVF
                     GSAGSANFLSRTTALLATIFFAISLVIGNLSSHNVAPKSQFEDLSQVEQKQVEPVKIE
                     NSDIPQ"
     gene            6241..6326
                     /locus_tag="PXE26_001743"
     tRNA            6241..6326
                     /locus_tag="PXE26_001743"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6275..6277,aa:Leu,seq:gag)
     gene            6529..7770
                     /locus_tag="PXE26_001744"
     CDS             6529..7770
                     /locus_tag="PXE26_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5594310.1"
                     /translation="MARTTKALNKTQIENAKSKDKEYILSDGDGLNLRVKPLPKGSKI
                     WIFNYTNPQTKNRTNLTIGRYPLITLAEARTICDGYRSLIEKGIDPQEEKKRLQQEAE
                     NRVNDTFRNVAESYFNGIYKEKAKNPITREKNWIRLENHIFPYIGDKHVEEIKVKALV
                     DIYSKVADKSNTLKKLHQLVSAVMDHAITQGIIESHNCRLAVKNFYIKPSTPNPTIEL
                     EELPQLFTDLHNAKLSKQTYALVCWSFLTALRPNEAVNAEWKEIDFEKKLWNIPKEKM
                     KGKADKKRPHSVPLSSQALKILEMMKMHSNSSPFVFPGRSSNSKPMSNATVNSTLKRN
                     GYKDRLTAHGIRAFVKTFLSSRKVDRHVSESILSHLLEGGDDLENTYNRYDFLEERVP
                     VMQLLGDYCEQCGMNLELVRG"
     gene            complement(7929..9797)
                     /locus_tag="PXE26_001745"
     CDS             complement(7929..9797)
                     /locus_tag="PXE26_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HDL5594311.1"
                     /translation="MFKKLLELRQQKAAIEAEMRSILTKADEEKRSTTEAEGAKFDEL
                     RSQAENLVKEIARYEAITDEQRNQPGQQVETANVKVSDDELRHWIKTGELRSLATNTN
                     GGADGGYSVIPELDKQVMKRLTDDSVMRQIANVVKLTQGKEYKKLVSAGGAAVNHIGE
                     GEARTETATPKMNEVTIAVHNIYAYPKTTQEILDFGGVDILGWLTEEISESFVETEET
                     DLTNGTGTKQAKGFLAYPRTTANDKTRPFGTLQKMEVQPATVIGWNSKGQPETLTPYP
                     PYSVNVQRTVNRQNWLTAYIPHSYDENVAETPHFDQWLNFVSDGKQDKAKNILAALYA
                     ILTNRYNWQVFFQVTGKGGSGKSVFAGIATLLAGEKNTASARLENFDDERKIAGLEDK
                     KLIICSEQTKYAGDGGGLKAITGGDMVRVDPKNKHPFNARIAAMIMIVNNDPCKWTER
                     NGGIDRRIVNFRFNKRPPENERDPYFMDKITLEIGGIIRKVLDTFPDPLEAKRALEEQ
                     KESLEALEIKKQSDPLTDFFEYLYTTENTDGLYIGTGNTLGHDKIRTHLYPAYLAFVK
                     AKNVLELGLNTFVVGIEQAVKQHGNKHDFTKRKTNKGQRTNVHFKNFDDFQSDILN"
     gene            complement(9808..10203)
                     /locus_tag="PXE26_001746"
     CDS             complement(9808..10203)
                     /locus_tag="PXE26_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5594312.1"
                     /translation="MISNEAIRQEVIDLLQGNIQGIQHFHNGRAVFTDVENELPAIAV
                     FIDEAEYSQLTLCDGECNAYLKIGIYLPMFSTENDLDLVAQKISDVMNQATFHSMDEC
                     VLAKYSYDYDANESAWKTATLHYNINYLN"
BASE COUNT         3062 a         2200 c         2183 g         2972 t
ORIGIN      
        1 acaaaaatta caccaaatta ataatcgact aaaaattgtc gccacagata gccaatggaa
       61 cacccctctt gctatttttt ggacattagt gctttgcctg ccaagtacac taatgttctt
      121 agccggattt gttgctatca cttatatttc atttgaaaat cctcaggaag tctggacttg
      181 gggattaaaa atggcaattt attggctgta ttttgccttt ttagtggcga tgctacgccc
      241 gcacggcata ggacatattc actttaatat gccacaaaaa agtaatgaaa tcttccgtaa
      301 tattttaaaa cgttcggtat ggatcattgc tttattactg aacacctcta tttttacaaa
      361 cttagagatg ggaatatctt acgacatgct tggacaaaca atgactattt ttgtccttat
      421 attaatgatt tggatgattg taccggcatt taggcaagct atttctacct atgagaatgt
      481 cacaacagaa gagaaaaaag aatctaaaag tattttactc actattgtca aattagtgct
      541 actgcttgcc cctatcattc ttatcattct gattgcattg ggctattact atactgcact
      601 ggtgatcatt gagcatttag tagattctta ttttgcgatc attacttgga ttattattcg
      661 taatattctc tatcgagcat tctctatttc atcacgccgt ctggcttaca gacgtttaca
      721 agaaaaaaga gaagcagctg aagccaaaac acgagctaaa gcagaacaaa atgatgaaaa
      781 cccggacggt gtcgagcttc cttttgagct aaaagaagac tctattgccg taagcgaagt
      841 caagaaccaa atgttgaaat taactgattt tgtgctttgg attggcttat ttgtgctgct
      901 ttactgggtt tggtcggact taattactgt tgcactctac ctagacggcg ttaccttatg
      961 gcaacaaagt gttacaacag aagccgggat tgtaatggaa tccattaccc tgctgaattt
     1021 actcactgct attctgatta ttgtggtaat ggtggtactc attcggaact tatccggttt
     1081 acttgaagcc ctgattttct cgcacttcaa gttatcgcaa ggtacaccat acacaattac
     1141 cacactctta acctatttga ttattgcgtt aggggcaatc tttgcgttcg gtacattagg
     1201 gatgtcttgg agcaagctcc aatggctact aactgcactt tctgtcggtc tgggttttgg
     1261 tatgcaagag atctttgcaa acttcgtttc agggattatc atcttgtttg aacgtccaat
     1321 gcggattggc gacaccatta ccatcggcac ttacagcggt acggtttcca aaattcgtat
     1381 tcgtgccaca accttagtcg attttgacgg caaagaagtg attgtaccaa acaaagcatt
     1441 cgtaaccgaa cgcttggtga actgggcatt aagcagcacc gcaacccgca ttattgttca
     1501 agtcggcgtg gcttacgggt ctgatttaga attagtcaaa cggctgttat tacaagtggc
     1561 ggaagaaaat ccgaaagtct tgaaagatcc acaaccaagg gcttatttcc ttacctttgg
     1621 tgcaagcact ttagatcacg aattaagagc ctatgtgaac gatttatctg atcgtaaccc
     1681 aactattgat gcactaaata cacgcatcca ccagctcttt aatgaacata atattgatat
     1741 tgcatttaac caattagatg tttatatcaa aaacaacgat acacaagatg aaattaaagt
     1801 agattcaaaa cgctttgagt ttgaacgacc aaataacata acagcaaaag aaaaggaata
     1861 acaatggcag gcaacagcat cggacaatta tttaaagtga ccactttcgg cgaatctcac
     1921 ggtattgcat taggctgtat cgtagatggc gtaccgccga atatggcttt aagcgaagca
     1981 gatttacagc cggatttaga ccgccgtaaa cccggtactt cacgctacac cacgcctcgc
     2041 cgtgaagatg atgaagtgca aattttatcg ggagtctttg aaggcaaaac gacgggaaca
     2101 agcattggtt taatcattaa aaacggtgac caacgctcac aagactatgg cgacattgcc
     2161 gaaaaattcc gcccggggca cgcagattat acctatcagc aaaaatacgg cattcgagat
     2221 taccgtggcg gtgggcgttc ttctgctcgg gaaaccgcaa tgcgggttgc cgccggggcg
     2281 attgccaaaa aatatttgcg tgagcaattt ggcattgaag tgcgaggcta cctctcacaa
     2341 atcggcaata tcaaaattga cccgaaaacc gttgaaaata ttgaacaaat tgattggcac
     2401 gcagtcaata gtaatccttt cttctgcccc gatcccgttg cgattgaagg ctttgatgcc
     2461 ttaattcgtg agctgaaaaa agagggcgat tcggtggggg caaaattaac cgtgattgca
     2521 gagcgtgtac ctgtagggtt aggcgaacct gtgtttgacc gcctagatgc cgaccttgcc
     2581 cacgccttaa tgtcgatcaa cgccgtgaaa gcggtggaaa ttggcgatgg ttttgcagtt
     2641 gtggaacaac gtggtagcca gcaccgagat gagatgacgc cgcaaggctt tctctctaat
     2701 cacgccggcg gaattttagg tggtattagc tccggtcagc cgattatcgc tcatattgcg
     2761 ttaaagccga cctcaagcat tactattccc ggcagaagcg tgaacaaaaa caacgaagcc
     2821 gttgaagtga tcactaaagg cagacacgac ccctgtgtag gtattcgtgc tgtgccgatt
     2881 gcagaagcga tgatggcgat tgtactactc gaccatctgt taagatttaa ggctcaatgc
     2941 cgttaaacac ataaaattgg aaaaatgaaa ttattaaaaa cacttttagt ctcaagcctt
     3001 gcttttacag ctaccgcact gaatgcaacg caatgggaga aaatcaaaac tccggttcaa
     3061 ggaaaagcac aatctatcgg cggttatagt aacggctgta ttattggggc acagcccctt
     3121 gcattaaaag gcgaaggcta ccaagtgatc cgctcggctc gtaaccgcta ttacggacac
     3181 ccacaactgc tcgattatct cactcactta ggcaaaaaaa ccaaagctgc cggtgtgccg
     3241 accattttaa tcggcgatat gggaatgcct gccggtgggc gttttgcctc cggtcacgcc
     3301 tcccatcaaa ccgggctgga tgctgatatt tggtttaagt tcggaccgat ggacgatgaa
     3361 accgcccgca atccagcagg gcttgccacc attatggtaa accgtagtac cgagcgggtt
     3421 gatgattcac tctggaatca acaccatact aatttagtaa aacttgctgc aaccgatcct
     3481 cgagtggatc gcatttttgt caatcctgcc attaaagtga aactctgcca aaccgcaggc
     3541 aatgatcgtg cttggttacg caaaattcgc ccgtggtacg gacacgactc ccatttccac
     3601 gtccgtttaa cctgcccggc tgatgccgca agttgtgaaa atcaagccct tgtgcctgcc
     3661 ggtgacggct gtggtgaaga gctttactcg tggtttgagc cgaaagaagc ctccggcaca
     3721 ccaaaagcca aagtgctacc cacagcgcct gttcaatgtc agatgatttt atctgaacaa
     3781 ggcttgaatt aattgcaaaa taacaacctt ttttgaccgc ttgtcagccc acaagcggtt
     3841 cattttctta aataatttac gattatgcgt ttatttgttg ccgaaaaacc cagccttgcc
     3901 cgagcgattg ccgatgtgtt accaaaaccc cataccaaag gagatggctt tatccaatgc
     3961 ggcgaacacg acactgttac ttggtgtatc ggtcatttat tggaacaggc tgaacccgat
     4021 gtctatgatg agcgtttcaa aatgtggcga atggaacatt tgccgattgt gcctgaacaa
     4081 tggaaattga ttcccaaaaa agagacgctc aagcagttta aagtggtgga aaagctgatt
     4141 aaaaaagccg atgttttagt caatgccgga gacccggatc gagaagggca gctgttggtg
     4201 gacgaagttt ttggctattt gaatttatct gctgaacgca aaagccaaat tcagcgttgt
     4261 ttggtaagcg atctcaaccc gaatgcggtg agccgagcca ttgaaaaatt gcaaaaaaac
     4321 agcgatttta taccgcttgc aacctctgct ctcgcccgag ccagagcgga ttggctgtat
     4381 ggtatcaata tgacccgagc ctatacccta caggggcgtt gggcaggcta taaaggcgtg
     4441 ttatcagtcg gacgtgtgca aacgccggta ttagggctga ttgttcgccg agatctggag
     4501 atcgagcatt tcgtgccaaa ggattatttt gaggtgttgg cacagattgt cgtgccggaa
     4561 acccaagagc gatttaaggc gcagtggcaa ccgagcaaag cctgtgaaga ttatcaagat
     4621 gaagatgggc gggtgctgtc tcgtccattg gcagaaaatg tggtaaaacg gattaccgac
     4681 cagccggcaa ccgtcaccga atatcaaaat aaaattgaaa aagaaactgc accgctgcct
     4741 tattctcttt cggtattaca aatggaagcc gccggcagat atgggctatc cgcccaagcg
     4801 gtgttggata tttgccaaaa gctgtatgaa acccataaac taattaccta ccctcgttct
     4861 gataatcggt atttgccgac cgaacatttc aacgacagat ttaaagtgat ggcggcgatt
     4921 gctcatcatt tacctgaata tcaacaaaaa ccggaagtga ttgatgccac tattcgcaat
     4981 cgttgctgga atgataaaga ggtggaagcc caccacgcca ttattcccac tgcacggcaa
     5041 gggacggtac atttaaccga aaatgaaaaa agagtttatc aactcattgc ccgccaatat
     5101 ctaatgcaat tctgccctga tgcggaatat cgcaaaagta aaatcgggct tgaaattgca
     5161 ggtggtagtt ttgtcgctca agcacgcaac cttgtaattg ccggctggcg agcgttactg
     5221 ggtaaagaag atagccttga cgatgcagag ccactactac cgattgtcaa aaaagggcaa
     5281 atcctccatt gtgaaaaagg ggaaattgtc agcaaaaaaa cacaaccgcc ccgccacttt
     5341 actgatcgca gtttgctttc agcaatgacc gggatcgccc gttttgtaca agataaagaa
     5401 ttgaaaaaaa tcttgcgtga aaccgatggt ttaggcacgg aggcaacccg agccggtatt
     5461 atcgaattgc tgtttaaacg tggtttttta atccgtaaag ggaaaaatat ccacagtacc
     5521 gaagccggca gaatattgat tcaagcactt cccgactctg ctacccagcc ggatatgacc
     5581 gctcattggg aaatgcagct gaatcaaatc agcaaaaaag agaccagcta tcagcaattt
     5641 atgtttgatc taaaccaaca gctcccacat ttattacaaa gcccaaaccg ccaagtgttg
     5701 caaaatttag cgaaaatcac accgcttgca agcggcaata aacctcgtta ttttaaaaag
     5761 cgaacacaaa ctgctgaaaa ttaaatcaag caggtaaaaa ttactgttta gcacttgtca
     5821 aacgggcgta aattctatat tatgcacgcc attgcaaatt tcgcataaag aatacaagag
     5881 aataaattaa tgttaattaa tgtactcact attgtttatc ttgtagttgc cgtattactg
     5941 atcgcatttg tattaatgca acaaggtaaa ggcgctgatg caggtgcttc tttcggggcg
     6001 ggtgcttcag caacagtttt cggctcagca ggatcagcaa attttttatc aagaacaact
     6061 gctctacttg caacgatttt cttcgcaatt agtttagtta tcggtaattt aagctcacac
     6121 aatgtagcac cgaaaagcca atttgaagac ttaagccaag ttgaacaaaa gcaagtagaa
     6181 cctgtaaaaa tagaaaatag cgatatccct caataatcgc ttaacattaa aaagaataaa
     6241 gctctggtgg tggaattggt agacacgcca tcttgagggg gtggtggaca cagtccgtgc
     6301 gagttcaagt ctcgcccaga gcaccattca actaaatttg gctcaacgga gctaaactaa
     6361 aaaagcctta gaaagcctgt aaaatcaaca tttacaggct tttttactat cttaactcaa
     6421 cggctctaaa cgtttcctat cacaaatttt agttacacgt ttagttacac gttttaaatc
     6481 gtgttactat actttcaata atcgtgtaac acttcgtagg tttaatttat ggctagaaca
     6541 actaaagcat taaataaaac tcaaatagaa aatgccaaat caaaggataa agaatatatt
     6601 ttatccgatg gcgatggatt aaatcttaga gttaaacctc tccctaaagg ctctaaaatt
     6661 tggattttta actacactaa cccacaaact aaaaacagaa caaatttaac tattgggcgt
     6721 taccccttaa ttacacttgc ggaagctcgc actatatgtg atggctaccg ctcgttaata
     6781 gagaaaggca tagatccaca ggaagaaaaa aagcggctgc aacaagaagc agaaaatcga
     6841 gtaaatgata ctttccggaa tgtggccgaa agctatttca atggtattta taaagagaaa
     6901 gcaaaaaatc cgattactcg tgaaaagaat tggataaggt tagaaaatca tattttcccc
     6961 tatatcgggg ataaacacgt tgaagaaatc aaagtaaaag cccttgttga tatttattct
     7021 aaagtggcag ataaaagcaa cacattaaaa aaactgcatc agcttgtatc tgctgtaatg
     7081 gatcacgcca ttacgcaagg cattatagaa agccataact gccgattagc agttaaaaac
     7141 ttttatatca agccatctac gccaaatccc actattgagc ttgaagaatt accgcagtta
     7201 tttactgatt tacataatgc gaagttatca aagcaaactt acgcccttgt ttgttggtcg
     7261 ttcttgactg ctctacgccc aaatgaagcc gttaatgctg aatggaaaga aatagacttt
     7321 gagaaaaagc tatggaatat ccctaaagag aagatgaaag gaaaagcaga taaaaaacgc
     7381 cctcactctg tgccgttatc ctcccaagcg ttaaagatat tagagatgat gaaaatgcac
     7441 tctaattcta gcccttttgt ttttccaggt cgttcatcaa atagtaaacc aatgagcaac
     7501 gcaacggtaa attcaacatt aaaaaggaat ggatataaag atagactaac cgcacacggt
     7561 attcgggcat ttgtgaaaac atttctatct tctcgcaaag tagatcgcca cgtttccgaa
     7621 agtatattat cccatttatt agaaggtgga gatgatttag aaaacacata caaccgatat
     7681 gattttttag aagagcgtgt gccagtaatg cagcttttag gtgattattg cgaacagtgc
     7741 ggaatgaatt tagagttagt tcggggttag ggaggtaaaa tatatgattt tagtcgtcac
     7801 gtcatcactt ttcccacttt cccctttaaa atcaaatagt taagtggtga tgactggttt
     7861 taaagtcatc attaagtcat cacaaaaagg tgatgaccta gaaaaaaaga ggggtttccc
     7921 cctctttgct aattcaaaat atcactttga aagtcatcaa aatttttgaa atgaacgttt
     7981 gttcgttgcc ctttattcgt ctttcgtttt gtgaaatcgt gcttattgcc gtgttgcttt
     8041 actgcttgct caatacctac tacaaaagta tttaagccta gttctagcac attcttagcc
     8101 ttaacaaagg ctaaatatgc cggataaagg tgcgttctta ttttgtcgtg tccaagcgtg
     8161 ttgccagttc cgatataaag cccgtctgta ttttctgttg tatatagata ctcgaaaaaa
     8221 tccgttaatg ggtcagactg ctttttaatc tccaacgcct ctaggctctc tttttgctcc
     8281 tctaaggctc ttttagcttc gagtgggtca gggaaggtat caagcacttt acggataatg
     8341 ccccctatct ctaatgtaat tttatccata aaatacggat cacgttcatt ttcaggcggt
     8401 cttttattaa aacggaaatt gacaatccgc ctatctatac cgccattccg ttctgtccat
     8461 ttacaagggt cgttattgac gatcataatc attgccgcaa ttcttgcgtt aaatgggtgc
     8521 ttgttcttcg gatcgactcg caccatatca ccgccagtaa tcgctttcaa tccgccacca
     8581 tctccagcgt atttcgtttg ctcggaacag ataatcagct ttttatcttc cagccctgcg
     8641 attttgcgtt catcatcaaa gttttctagc cttgctgaag ctgtgttctt ttctccagct
     8701 aatagtgtcg caatgccagc aaataccgat ttaccgcttc cgcctttccc tgttacttgg
     8761 aagaatactt gccagttgta gcggtttgtt aaaatcgcat agagagcggc tagaatgttc
     8821 ttcgccttgt cttgcttgcc gtctgataca aagttaagcc attgatcaaa gtgtggtgtt
     8881 tcggctacgt tctcgtcata gctatgtgga atataagccg ttagccagtt ttggcggtta
     8941 acggttcttt gaacatttac cgaataaggt gggtaagggg ttaaagtttc gggttgcccc
     9001 ttgctattcc aaccaatcac cgtagccggt tgtacttcca ttttttgaag cgtgccgaat
     9061 ggtcgggttt tatcgttggc tgtcgtgcgt ggataagcta agaagccttt agcttgtttt
     9121 gtgcctgtac cgttggttaa atcggtttct tcagtttcga caaaggattc tgaaatttct
     9181 tcagtcagcc agcctagaat atctacacca ccaaagtcta aaatctcttg cgtggttttc
     9241 gggtaagcgt aaatattatg aacggcaatc gttacttcat tcattttcgg ggtggcggtt
     9301 tcggtgcgtg cttcgccttc accgatatga tttaccgctg caccgccagc cgatactaat
     9361 tttttatatt ctttgccttg ggtcagtttc accacgttag caatttgtcg cataacagaa
     9421 tcatctgtta ggcgtttcat tacttgcttg tcaagttccg gaatcactga atagccaccg
     9481 tctgcccctc catttgtatt cgtagcaagc gaacgcaatt cgcctgtttt aatccagtgg
     9541 cgaagctcgt catcagatac tttcacattt gcggtttcaa cctgttgccc cggttggtta
     9601 cgctgttcat cagtaatcgc ttcataacgt gcgatttctt ttactaaatt ttcagcttgt
     9661 gagcggagtt catcaaactt agccccttct gcttcagttg ttgagcgttt ttcttcgtct
     9721 gctttggtta aaattgaacg catttctgct tcaatagccg ctttttgttg gcggagttct
     9781 aaaagttttt taaacattgc cttatcctta attcaaataa ttgatattgt agtgaagcgt
     9841 tgctgttttc cacgctgatt cgttagcatc ataatcatag ctatacttag ccagcacaca
     9901 ttcgtccata ctgtggaatg tggcttgatt catcacatca ctgatttttt gagccactaa
     9961 atctaggtcg ttttcggttg aaaacattgg taagtaaatg ccgattttca aataggcgtt
    10021 gcattcgcca tcgcaaagcg tgagttggct atattccgct tcatcaatga atacggcgat
    10081 agccggtaat tcattttcta catcggtgaa tacggctcgg ccgttatgga aatgttgaat
    10141 gccttgaatg ttaccttgta ataagtcgat aacttcttgg cggattgctt cgttagaaat
    10201 cataaaaaag tcctcttaat taagaaggct acaattagcc acagaacaat ataggcataa
    10261 tttcaacgga gtaaataggg taaaatttaa tcgtttagct acgtttgaac acgttaagag
    10321 gataattttt aaatgattat tttttattca acaaaagaca aaatggaagg aaataaacga
    10381 ataattttat agaagtgatg actgtgacta cttagtg
//
LOCUS       DANLZD010000095        10168 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.095, whole genome shotgun sequence.
ACCESSION   DANLZD010000095 DANLZD010000000
VERSION     DANLZD010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10168)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10168)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10168
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.095"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..728)
                     /locus_tag="PXE26_001747"
     CDS             complement(<1..728)
                     /locus_tag="PXE26_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5594313.1"
                     /translation="MWVRLGDICLKITDGTHHSPPNIDKSDFLYITAKNIKKDGLDLS
                     KISYVTKEIHNEIFSRCNPEKGDILYIKDGATTGVSIINTLNEPFSMLSSVALIKTSQ
                     EIDNEYLNYVMNSHYFYNISIGSMSGTGIPRITLTKLESYLVPVPPLLEQQRIVQKIE
                     ELLPLVERYEQTEQQLTKLNNTFPEQLKKSVLHAAIQGKLTEQDPNDELASCLIERIK
                     AEKNRLIAEKKLKKPKSVSEIVMR"
     gene            906..3182
                     /gene="gshAB"
                     /locus_tag="PXE26_001748"
     CDS             906..3182
                     /gene="gshAB"
                     /locus_tag="PXE26_001748"
                     /EC_number="6.3.2.2"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate--cysteine ligase
                     GshA/glutathione synthetase GshB"
                     /protein_id="HDL5594314.1"
                     /translation="MKLQKLIRENHLALLFQQGNFGLEKESQRVDRNGNIVTTPHPAV
                     FGNRSYHPYIQTDFAESQLELITPPNAKLEDSFRWLSAIHEVVLRSLPEEEYIFPLSM
                     PAGLPPEEQIQEAQFDNPEDVQYRQHLSKNYGKYKQMVSGVHYNFQLSTEFVEKAFAL
                     QTEYSELKAFQNALYMKLANNFLRYQWILLYLLAATPTVESQYFYEKSPLARGQLVRS
                     LRSSPYGYVNSEKVVVNHDSLESYVESLEANVANGLLIAEKEFYSNVRLRGGKKAREL
                     LENGVKYAEFRLFDLNPFAPYGIELNDAKFIHYFLLGMLWLEETSGQKEVEIGKQKLY
                     QVALEDPRTETAFRAEGEAILNQLLAMLEELSAGQESLDLVREKLAQFADPSKTLNGR
                     LIAAIEEVGSYKALGAKLAQTYKAQAFERFYALSAFDNMELSTQALFFDLIQQGIEVE
                     VLDENDQFLALKFGDHLEYVKNGNMTSRDQYISPLIMENKVVTKKVLAKAGFNVPKSV
                     EFTNLEQAVAHYPLFEGKAVVIKPKSTNYGLGITIFQQAVKNREDFAKAVEIAFREDK
                     EVMVEDYLVGTEYRFFVLGDETLAVLLRVPANVVGDGIHSVKELVERKNDDPLRGDGS
                     RSPLKKIALGEIEQLQLKEQGLTVDSVPAKGQTVQLRANSNISTGGDSIDMTDQMHES
                     YRQIAVGIAQAMGAKVCGVDLIIPDLTKPAEPNLSSWGVIEANFNPMMMMHIFPYQGK
                     SRRLTKAVIKMLFPEIGN"
     gene            3504..4481
                     /gene="manX"
                     /locus_tag="PXE26_001749"
     CDS             3504..4481
                     /gene="manX"
                     /locus_tag="PXE26_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HDL5594315.1"
                     /translation="MSIAIIIATHGVAAEQLLKTTEMLIGEQEDVAYIDFVPGENAET
                     IMGKYQALVEGPLSHCDQVLFLVDMWGGSPFNAANRFQDGKSGMDVVAGVNIPMLVNT
                     CMARDDVESLEELVEVALEAGSTGIRSLNHQPEVAEVQTATPAQETAAVQQPEIVDDG
                     RRMTIALARIDDRLIHGQVATVWTKESKVNRIIVVNEGVAKDSVRTTMLKSVAPLGVT
                     AHVVDVPKMIRVYNNPEYADDRVMLLFTNPSDVLALIEGGVPLNSINVGGISHKEGKQ
                     MVSHSVAVDQNDIDAFKAIDAKGVELEVRKVSSDSRQYMMDLLKKHNLI"
     gene            4493..5293
                     /locus_tag="PXE26_001750"
     CDS             4493..5293
                     /locus_tag="PXE26_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005716709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HDL5594316.1"
                     /translation="MELSALQIVLLFLVACISGMGSILDEWQTHRPLIACTMIGLVLG
                     DVTTGVIVGGSLELLALGWMNIGAAVAPDAALASIVSTILVIVGRQDISTGIAIAIPL
                     AAAGQVLTYVVRAITVGFQHAADKSIEDGNLSRLDWLHRGALLLQAMRIAIPALIVAL
                     TAGTDAVQTMLNAIPEVVTTGLKIAGGFIAVVGYAMVINMMRAGHLMPFFFAGFVIAG
                     FTDFNLVALGVLGTVIAMVYIHMHPKYNKSQQVVVAAAPKNDLDNRLD"
     gene            5307..6143
                     /locus_tag="PXE26_001751"
     CDS             5307..6143
                     /locus_tag="PXE26_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005564636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HDL5594317.1"
                     /translation="MTTEIKKVTKSDLNAVVRRSNLFQGSWNFERMQALGFAYAMVPV
                     IKRLYPDPNGPGRKEAIKRHSEFFNTQPFVGAPILGVTIAMEEERANGKEIDNAAING
                     IKVGLMGPLAGVGDPIFWGTVRPVFAALGAGLALKGELLGPILFFALFNIVRLAARYY
                     GVVYGYKKGLDVVQDMSGGLLQKLTEGASILGLFIMGALVQKWTSINVPLVLSTIQKQ
                     DGTIEVTTVQSILDSLMPGLLPLLLTFACMWLLRNRVNAIWIILGFFVIGILGAATGA
                     LA"
     gene            6236..6721
                     /locus_tag="PXE26_001752"
     CDS             6236..6721
                     /locus_tag="PXE26_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF986 domain-containing protein"
                     /protein_id="HDL5594318.1"
                     /translation="MTNTILILFILLGLVFAIYDQVFMHKLKGTTLLEIRLKKQKTID
                     TWLLIGLIVLSISYGVQNQIQPFTLYLLATCIILSVYLAFFRSPRLLLKQHGFFFANV
                     FFNYDKIYQVNIAEGKADEKILVIDLHSGRRLLAYVENAEDLQPVVDFFGGYKKESEQ
                     K"
     gene            complement(6807..7598)
                     /gene="tpiA"
                     /locus_tag="PXE26_001753"
     CDS             complement(6807..7598)
                     /gene="tpiA"
                     /locus_tag="PXE26_001753"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HDL5594319.1"
                     /translation="MARRPLVMGNWKLNGDKAFTKTLIADLKAELHGVEGCDVAIAPP
                     VMYLAHAEASLAGCGCGCSDKGLIALGSQNVDVNVKGAFTGDISPEMLKEFGAKYIII
                     GHSERRTYHKESDEFIAQKFKVLKDAGLVPVLCIGESEAENEAGKTEEVCARQIDAVI
                     NAHGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAAKSQAVADQVIIQY
                     GGSVNDANAAELFTQPDIDGALVGGVSLKAPAFAVIVKAAAAAKA"
     gene            7758..8672
                     /locus_tag="PXE26_001754"
     CDS             7758..8672
                     /locus_tag="PXE26_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HDL5594320.1"
                     /translation="MKLNYLYSPPQAVGRLKAEYADFIVREELGYELAGEGEFVAVKI
                     RKTNASTLFVGEKLAKFVGISEREMSYAGLKDRHNRKIRVGSLAGNHFELLLRDVAES
                     EELIYRLQQLQAVGFPNYFTEQRFGRDGHNLTQALRWANGEISVKDRKKRSFYLSAAR
                     SEVFNLVVSQRINDCLTQKILENDYVQLAGSNSFFCVKSDEIAETQARLAQQDLLLTA
                     PLIGERSLELECNPAEKAIIEQHAQLVALMQKERMAAARRAMLCKPQNLEWQFEQEGL
                     RLKFFLDSGSYATALVRELILLTEESEA"
     gene            8843..9631
                     /gene="surE"
                     /locus_tag="PXE26_001755"
     CDS             8843..9631
                     /gene="surE"
                     /locus_tag="PXE26_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HDL5594321.1"
                     /translation="MRILISNDDGFHAVGIQTLAKALRDAGHIVTIIAPDRNRSAASS
                     CLTLVDPLRVHRFDEYNYAVIAGTPADCVHLALNGLFDGKFAEKFDLVVSGINHGANL
                     GDDVVYSGTVAAALEGRHLPLPSIAVSLVGRKHSSFLDGENHFGTAAQVVLDLLEKME
                     TQRFPSNHVLNVNVPNLPYSELKGTMITRLGERSPAAEIVKQKDPRNADVYWIGVTGE
                     PLDESFGTDFYALNRDCVSITPIQVDMTAHKTIATLKGIFNETV"
     gene            9618..>10168
                     /locus_tag="PXE26_001756"
     CDS             9618..>10168
                     /locus_tag="PXE26_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL5594322.1"
                     /translation="MKLFETIYDKTMQWSKHRFAAFWLSFVSFIEAIFFPIPPDVMLI
                     PMSMAKPQNAFKYAVYTTLASVAGGVIGYFIGLYATDWVQGVIANWGMQANFDKAKLW
                     FETWGVAVVFLAGFSPIPYKVFTICAGVMQMAFFPFVITAAISRFARFILVAKLSAWG
                     GKKYEQKIRRSIELIGWGTIVLAV"
BASE COUNT         2913 a         2033 c         2187 g         3035 t
ORIGIN      
        1 tcacgcatta caatctctga aacacttttt ggttttttga gttttttctc ggcaataaga
       61 cgatttttct ccgcttttat ccgctcaatc aggcaagatg ccagttcatc attcggatct
      121 tgctcggtta atttaccctg aatagctgcg tgtaacaccg attttttcag ctgttcgggg
      181 aatgtattgt tgagtttagt gagttgctgt tcggtttgct cgtagcgttc aacaagcggt
      241 aataattcct cgattttttg cacaatgcgc tgttgttcta ggagtggcgg aactgggact
      301 aaataagatt ctaatttagt taatgttatt cttggaatac ctgttccaga catacttcca
      361 atagaaatgt tataaaaata atgactattc attacataat ttaagtactc attatctatt
      421 tcttgtgagg tcttaattaa ggcaacactg gataacatac taaatggctc attaagagta
      481 tttataatac ttactccagt tgtggctcca tctttaatat atagaatatc tcccttttca
      541 ggattacaac ggctgaaaat ttcattatga atttcttttg ttacatagct aatttttgat
      601 aaatctaatc catctttctt tatattttta gctgtaatat aaagaaaatc actcttatcg
      661 atatttgggg gagaatgatg agttccatct gtaattttta ggcatatatc ccccaacctc
      721 acccacaccc aactctcagg aatctcaaaa ggtggttcaa tggtataagg ggctttatcc
      781 gaagcagtat ttctgttata accaaatcat ctacttcatt ccaataaact aaaacccact
      841 atttcactaa gtctttcatt tgtgttattg tgccgataca tttttttgac tacaaaggat
      901 agatgatgaa actacaaaaa cttatccgag aaaatcattt agcattgctg tttcaacaag
      961 ggaattttgg gcttgagaaa gagagccaac gggttgatcg caacggcaat atcgttacta
     1021 ctccccaccc tgccgtattc ggtaatcgct cttaccaccc ttatattcaa accgattttg
     1081 ccgaaagtca gctagagtta atcactcccc cgaatgctaa attagaagac agttttcgtt
     1141 ggctctctgc tattcacgaa gtggtattgc gttcgttgcc agaggaggaa tatatcttcc
     1201 ctctcagtat gccggcaggc ttgccgccgg aagagcaaat tcaagaagca caatttgaca
     1261 accctgaaga tgtgcaatat cgccaacacc tttccaaaaa ctatgggaaa tataagcaaa
     1321 tggtaagcgg cgtgcattat aattttcaac tttcaacgga atttgtcgaa aaagcctttg
     1381 ctttacaaac ggaatatagc gagctgaaag ccttccaaaa cgcactttat atgaagttag
     1441 ctaataactt tttgcgttat caatggattt tgctctattt attggctgcc acgcctacgg
     1501 tggaatcgca atatttttat gaaaaatcac cgcttgcgag agggcaactt gtccgcagct
     1561 tgcgttcaag cccttatggt tatgtgaatt cggaaaaagt ggtggttaat cacgacagct
     1621 tagaaagcta tgttgaaagc cttgaagcca atgttgccaa cggattatta attgccgaaa
     1681 aagaattcta ttccaatgtg cgtttacgag ggggcaaaaa agcccgtgag ctattggaaa
     1741 acggtgtgaa atacgccgaa ttccgtttat ttgatttaaa ccctttcgcc ccttacggca
     1801 ttgagctgaa tgatgccaaa tttatccatt atttcttact cggtatgctt tggctggagg
     1861 aaacaagcgg tcaaaaagag gtcgaaatcg gcaaacagaa actttaccaa gtcgcacttg
     1921 aagatccaag aacagaaacc gctttccgtg ccgaaggtga agccatttta aatcaacttt
     1981 tagcgatgct tgaagaatta tctgccggtc aggaaagcct agatttggtg cgggaaaaat
     2041 tagctcaatt tgctgatcca agcaaaaccc tgaacggacg tttaattgcc gcaatagagg
     2101 aagtcggcag ttataaagca ttgggggcta aattggctca aacctataag gcacaagcct
     2161 ttgagcgttt ttatgcgtta tcggcatttg ataatatgga actttccact caagccctgt
     2221 tttttgattt gatccaacaa gggattgagg tggaagtact ggacgaaaac gatcaattcc
     2281 tcgccctaaa atttggcgat catttggaat atgtgaaaaa cggcaatatg accagccgag
     2341 atcaatacat ttcaccgctg attatggaaa acaaagtggt gacgaaaaaa gtattggcaa
     2401 aagccggctt taacgtgccg aaaagcgttg aatttaccaa ccttgaacag gctgtggcac
     2461 attatccgct atttgaaggc aaagcggtgg tgattaagcc gaaatcgact aactatggtt
     2521 tagggattac catcttccaa caagcggtca aaaatcgaga agattttgca aaagcggttg
     2581 aaattgcgtt ccgtgaagac aaagaggtga tggtggaaga ctatttagtc ggtactgaat
     2641 accgcttctt tgtactgggc gatgaaaccc ttgcggtgtt actgcgtgta ccggcgaatg
     2701 tagtgggaga tggcattcac agtgtaaaag agctggtgga gcgtaaaaat gacgatccgc
     2761 tacgtggcga tggctctcgt agcccgttga aaaaaattgc cttaggtgaa attgagcagt
     2821 tacaacttaa agagcaaggc ttaaccgtag attccgtacc ggcgaaaggt caaacagttc
     2881 aactgcgtgc caattccaac atcagcaccg gcggcgattc gattgatatg accgaccaaa
     2941 tgcacgaaag ctatagacaa attgcagtgg gaattgctca ggcaatgggg gctaaagtgt
     3001 gtggggtgga tttgatcatt cctgatctca ccaaacctgc cgagccaaat ttaagctctt
     3061 ggggcgtcat tgaggcaaac ttcaacccaa tgatgatgat gcacattttc ccttaccaag
     3121 gcaaatcccg ccgtttaacc aaagcggtaa tcaaaatgct gtttcctgag ataggcaatt
     3181 aaattttctc tctatacctc ttttaaggag aatttactca agaattctcc ttaatttatt
     3241 tctaaagttt tactccaatt aaatttcact ttgtgcaaaa cactccaaaa gaagaatttt
     3301 tttgtataag taaaaacgat cgaaaatatc tccgttaaca aaatgttata aagaaaagac
     3361 atttagccca atttatagcc aaaaaagctt attgtctgtg atatagatca cacttttgta
     3421 attaatacat tgtgtgaaat aattatcata ttaaaatctc gccccagtaa ataaacaact
     3481 taaaaaaccg caaggagtaa caaatgagca ttgctattat catagcaacc catggtgttg
     3541 ctgcagagca acttctcaaa acaactgaga tgttgattgg tgaacaagaa gatgttgctt
     3601 acattgactt tgttcccggc gaaaatgcag aaacgattat gggcaaatat caagcattgg
     3661 ttgaaggtcc actatcacac tgtgatcaag tgctgttttt ggtggatatg tggggaggaa
     3721 gcccattcaa cgccgcaaac cgattccaag atggaaaatc gggtatggat gttgttgcgg
     3781 gtgtgaatat tcctatgtta gtgaacacct gtatggctcg tgatgatgtg gagtcgttgg
     3841 aagaattggt ggaagtcgca ttagaagccg gctcaaccgg gattcgttca cttaatcacc
     3901 aacctgaagt ggctgaggtg caaaccgcta ctcctgcaca agaaactgca gctgttcaac
     3961 agcctgaaat tgttgatgac ggacgtcgta tgaccattgc ccttgcccgt attgatgacc
     4021 gcttgattca cggtcaagtt gcgacggttt ggacaaaaga aagtaaagtc aatcgcatta
     4081 ttgtggtaaa cgaaggtgta gcaaaagata gtgtacgaac tactatgcta aaaagtgttg
     4141 ctcctcttgg cgtaacggct cacgttgttg atgtacctaa aatgattcgt gtctataaca
     4201 accctgaata tgccgatgat cgtgtaatgt tactctttac caacccaagt gatgtcttag
     4261 ccttaattga aggcggtgta ccactcaata gcattaacgt gggcggtatt tcgcataaag
     4321 aagggaaaca aatggttagc cattctgtgg cggttgatca aaatgatatt gatgccttca
     4381 aagcaattga tgcgaaaggc gttgaattag aagtacgcaa agtctcaagc gatagccgtc
     4441 agtatatgat ggatttattg aaaaaacata acttaatcta aaggaaatta ctatggaact
     4501 ttcagcatta caaattgtgc ttttattcct cgttgcctgt atctcaggta tgggctcaat
     4561 tcttgatgaa tggcaaaccc accgtccgtt aattgcctgt acgatgatag gcttagtgct
     4621 tggtgatgtg actaccggcg ttattgttgg tggctcatta gagttattag ctttaggttg
     4681 gatgaacatc ggtgccgctg ttgcaccaga tgcggcatta gcctctattg tctcaaccat
     4741 tttagtcatt gtaggtcgtc aagatatttc aactggtatc gccatcgcta ttccgcttgc
     4801 agctgccggt caagtattaa cctatgttgt gcgtgcaatc accgtaggtt tccaacacgc
     4861 agcagataaa tcaattgaag acggtaactt aagccgttta gactggttac atcgtggtgc
     4921 tttattgctt caagcaatgc gtattgccat tccggcatta attgtggcat taacagcagg
     4981 tacagatgcg gttcaaacaa tgttaaatgc cattcctgaa gtggttacaa ccgggctgaa
     5041 aattgccggt ggcttcatcg ccgtggtggg ttatgcgatg gtgatcaata tgatgcgtgc
     5101 aggtcattta atgccgttct tcttcgcagg ctttgtaatt gcaggcttta ccgatttcaa
     5161 tcttgttgcc cttggggtat taggtacggt tattgcaatg gtttatatcc atatgcaccc
     5221 taaatataac aaaagccaac aggtagtggt ggcagctgca ccaaaaaatg atttagacaa
     5281 ccgtttagac taagagggca tttaaaatga caactgaaat caaaaaagta acaaaaagcg
     5341 atttgaatgc cgttgtacgt cgttcaaact tattccaagg ttcgtggaac tttgagcgta
     5401 tgcaggctct tggttttgcg tatgcgatgg taccggttat caaacgttta tatccggatc
     5461 caaatggccc gggtcgcaaa gaagcaatta aacgccattc tgagttcttt aacacccagc
     5521 cattcgtcgg tgcaccgatt ttaggggtaa ccattgctat ggaagaagaa cgtgccaacg
     5581 gtaaagaaat cgacaatgcc gcaattaacg gtattaaagt tggtttaatg ggaccattag
     5641 ccggtgtggg tgacccaatt ttctggggaa ctgttcgccc tgtatttgcc gcattaggag
     5701 caggcttagc cttaaaaggt gagcttttag gcccaatcct gtttttcgcc ttatttaaca
     5761 tagtgcgttt agccgcacgc tattatggcg tagtgtatgg ctataaaaaa gggttagatg
     5821 ttgtacaaga tatgagcggc ggtttattgc aaaaattaac cgaaggtgct tcaatcttag
     5881 gtctgtttat tatgggggca ttggtacaaa aatggacgag cattaacgtt ccgcttgtgc
     5941 tttcaaccat tcaaaaacaa gacggtacca tcgaagttac cacagtgcaa agcattctcg
     6001 acagcttaat gccgggccta ctcccattat tattaacctt tgcttgtatg tggttacttc
     6061 gtaatcgagt aaatgctatc tggattatcc tcggtttctt tgttatcggt atcctcggcg
     6121 ctgcaaccgg tgcattagct taattgcaaa attttctgtg aaaacgaccg cttgaacttg
     6181 aacattcaag cggtttttta tacgctttag cccaaataaa ttcacttgct taattatgac
     6241 caataccatc cttattctct ttattttact tggcttagta ttcgccattt atgaccaagt
     6301 ttttatgcac aaactcaaag gcacaacctt actggaaatc cgtttaaaaa agcaaaaaac
     6361 aattgatact tggttattga ttggtttaat cgtcttgtca attagctatg gcgtacaaaa
     6421 tcaaatccag ccttttacac tttacctgct ggcgacttgc attattctgt cggtctatct
     6481 cgcctttttc cgttcccctc gcttgttgtt aaaacagcac ggttttttct ttgcgaatgt
     6541 cttttttaat tacgacaaga tttatcaagt caatattgca gaaggaaaag cagacgaaaa
     6601 aattttggta attgatttac atagcggaag aaggctgctt gcctatgttg aaaatgcgga
     6661 agatcttcaa ccggtagtgg atttttttgg cggttataaa aaggaaagtg agcagaaata
     6721 gtttgcgaac aaaacacaag cggtcatttt tccctgaaat tttgcaaaaa actgaggaaa
     6781 aatgaccgct tgtaaaatcg gttaaattag gctttagcag ccgctgccgc tttaacgatc
     6841 accgcaaaag caggcgcttt aagtgaaaca ccgcctacta atgcaccgtc aatatccggt
     6901 tgagtgaata actctgctgc attggcatcg tttacagagc caccgtattg aatgatcact
     6961 tggtcagcca ctgcttgcga tttagctgca atatggtcac gaataaattt atgcactgct
     7021 tgtgcttgtg ccggagtcgc tgatttgccg gtaccgattg cccaaattgg ttcgtaagca
     7081 ataactgcac cgttgaatgc ttccacaccg tgcgcgttga tgaccgcatc aatttgtctt
     7141 gcacacactt cttcagtttt acctgcttca ttttcggctt cagattcacc gatacataat
     7201 acaggcacta agccggcatc ttttaatact ttgaattttt gagcaataaa ttcatcgctt
     7261 tctttgtggt aagtacggcg ttctgaatgc ccgataataa tatattttgc cccaaactct
     7321 tttaacattt caggtgaaat atcaccggtg aatgcccctt ttacgttcac atcaacgttt
     7381 tgtgaaccaa gtgcgattaa gcctttatca ctgcaaccac agccacaacc ggcaagtgat
     7441 gcttcagcgt gtgccaaata catcaccggt ggagcgattg ctacatcaca gccttcaacg
     7501 ccatgtaatt ctgcttttaa atctgcaatt aaggttttag taaacgcttt atcaccgttt
     7561 aatttccagt tacccattac aagtggacga cgtgccattt tgtttctcct atatgaagtt
     7621 gaacttaaat ataaacgttg caaactatac caaattttaa tgtcgttttg ttgtttttat
     7681 tttgcttttt ctgatctaga tcgaaaggtt taacgtataa tgccgaaatc ttatttttta
     7741 tgttattcga gaagtgaatg aaactgaatt atttatactc tcctcctcaa gctgttgggc
     7801 gactaaaagc cgaatatgca gactttattg tgcgtgaaga actgggctac gaactagccg
     7861 gcgaagggga atttgtggcg gttaaaatcc gcaaaaccaa cgccagcacg ctgtttgtgg
     7921 gggaaaagtt agccaaattt gtcggtattt ccgagcgtga aatgagttat gcaggcttaa
     7981 aggaccgcca caaccgcaaa attcgtgttg gttcgctcgc cggcaatcat tttgaattat
     8041 tgctacgtga tgtagcagaa agcgaagagt tgatttaccg tttgcaacag ttgcaagcgg
     8101 tcggatttcc caattatttt accgaacaac gtttcgggcg agacggacat aacctgactc
     8161 aagccttgcg ttgggcaaac ggggaaatta gcgtgaaaga tcgcaaaaaa cgcagtttct
     8221 acctttccgc tgcccgctcg gaagtgttta atttagtggt ttcacagcgg attaatgact
     8281 gcttaaccca aaaaatcttg gagaatgatt acgttcaact tgccggctct aacagctttt
     8341 tctgcgtgaa atcggacgaa attgctgaaa ctcaagcccg tttagcacag caagatctac
     8401 ttctcaccgc tccgctgata ggcgaaagat cgcttgaatt agaatgcaat cctgctgaaa
     8461 aagccatcat agagcaacac gctcaattgg ttgccttaat gcaaaaagag cgtatggcag
     8521 ccgctcggcg agcaatgctt tgtaagccac aaaatctgga atggcaattt gaacaagaag
     8581 ggctacggtt aaaattcttt ttagattcag gcagttatgc cactgcactg gtgcgagagt
     8641 taattctgct taccgaagag agcgaagctt agtccataac acataacaag cggtaagatt
     8701 ttaatcattt tttgcaattt gcaaaacttt aacaaaatct taccgctttt tgcactttta
     8761 gactaaaaaa actgtcgaaa aattgttaga attgcgatct ttgtatttag agtctatcaa
     8821 gatgtaagat ctaaaggaaa ttatgcgaat tttaattagt aatgacgatg gttttcacgc
     8881 tgtcggcatt caaactttag ccaaagcctt gcgagatgca ggccatatcg tcaccattat
     8941 tgcaccggat cgtaaccgca gtgcagcttc aagctgccta accttagtag atccacttcg
     9001 ggtgcatcgt tttgatgaat ataattatgc ggtgatcgcc ggcacacctg ccgattgcgt
     9061 gcatttagcc ttaaacggct tgtttgacgg caaatttgca gaaaaatttg atttggtggt
     9121 ctccggcatt aatcacgggg caaatttagg cgatgatgtg gtttactccg gtacggtagc
     9181 ggcagcattg gaaggccgcc acttgccatt accaagtatt gcagtatcac tggttgggcg
     9241 taaacactct tcgtttttag acggtgaaaa tcattttgga acggcagcac aggtagtgtt
     9301 agatttattg gaaaaaatgg aaacgcaacg ttttccatca aaccacgttc tcaatgttaa
     9361 tgtgccgaat ttaccttatt cagagctaaa aggcacaatg atcacccgct taggtgaacg
     9421 ttcacccgct gcggaaattg tgaagcaaaa agatcctcgt aatgctgatg tctattggat
     9481 tggtgtaaca ggtgaaccac tggatgaaag ttttggtact gatttttatg cattaaaccg
     9541 agattgcgtt tctatcacac caattcaagt ggatatgacc gctcataaaa cgatagcaac
     9601 cttaaaaggc atttttaatg aaactgtttg aaacaattta tgacaaaaca atgcagtggt
     9661 ctaagcaccg cttcgctgcc ttttggttga gttttgtcag ttttatcgag gcgatctttt
     9721 tcccgattcc gccggatgtg atgttgattc cgatgtcgat ggcaaaaccg caaaatgcgt
     9781 ttaaatatgc agtttacact acccttgctt cggttgccgg tggtgttatt ggttatttta
     9841 ttggcttata tgctaccgat tgggtgcaag gcgtcatcgc aaattgggga atgcaagcaa
     9901 actttgataa agcaaaattg tggtttgaaa cttggggtgt cgcggtagta tttttagccg
     9961 gtttttcgcc gattccctat aaggtattta ccatctgtgc cggtgtaatg cagatggcgt
    10021 tcttcccgtt tgtgattact gctgcgattt ctcgctttgc ccgttttatt ttggtagcaa
    10081 aactctctgc ttggggtggc aaaaaatatg aacaaaaaat tcgccgctca attgaattaa
    10141 ttggttgggg aacaatcgtt ttagccgt
//
LOCUS       DANLZD010000096        10096 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.096, whole genome shotgun sequence.
ACCESSION   DANLZD010000096 DANLZD010000000
VERSION     DANLZD010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10096)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10096)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10096
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.096"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            163..393
                     /locus_tag="PXE26_001757"
     CDS             163..393
                     /locus_tag="PXE26_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594323.1"
                     /translation="MNAQATLNNHKDYILCGRKEKRTSDFINVFEVFENEATQEFVIE
                     RAMFRNGKLIDWNQSDKMNAEQAQQLWQAYIH"
     gene            775..1011
                     /locus_tag="PXE26_001758"
     CDS             775..1011
                     /locus_tag="PXE26_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594324.1"
                     /translation="MSNQEFVKLGSVEPSTIDELQKEDIRQAILKSVSITPYYVGLEI
                     AVCQAISAINKFSDGCITEELLDTKNGDKYRKNN"
     gene            1318..1393
                     /locus_tag="PXE26_001759"
     tRNA            1318..1393
                     /locus_tag="PXE26_001759"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1351..1353,aa:Arg,seq:tct)
     gene            1580..2086
                     /locus_tag="PXE26_001760"
     CDS             1580..2086
                     /locus_tag="PXE26_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594325.1"
                     /translation="MKTKYKIIIERAKQQGLTHIELTQKHCLYLATSVGKLCYGVANN
                     AEQHIKLAAGEIFTLLTIINHQIQFDEDLELHTWKASGTTPPEQRAIRMLHHTSQFAW
                     FAPWLVDSNEKEQNQNTIRINLFNKCSGILIELNGILKEYELTLDECLDEFLKNKHCL
                     NEFSIHKE"
     gene            2090..2449
                     /locus_tag="PXE26_001761"
     CDS             2090..2449
                     /locus_tag="PXE26_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594326.1"
                     /translation="MTTFSIYTSVWHDSSTKGFRHNIKHKRHDCWRADIRIKQKINDV
                     WVQISRIRKRFKCPEQAKSFVEQWKQIDSPAFMQHQINRQALREELSNLEQRKQKQDG
                     ILEVIEYRISQIKELLK"
     gene            2446..2925
                     /locus_tag="PXE26_001762"
     CDS             2446..2925
                     /locus_tag="PXE26_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594327.1"
                     /translation="MKRNKVESYTIRLLKNNHTKRYFGEVILNGIKEISTAEMMSEIN
                     AIKAVNKRIEALNKTKAVNLPNYPEIRGHQPIMYNYNFEQIEEDPEQVKPKPSKPKRK
                     PFIPYGLNGYFVDSNGNIRLHLDRRASAETITLETDFFNVLAEMVKRTQEANNAKHA"
     gene            3059..3271
                     /locus_tag="PXE26_001763"
     CDS             3059..3271
                     /locus_tag="PXE26_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594328.1"
                     /translation="MIGYEDYTDASLQPEEDPSEEAFILAEENIIELLENNGFETIAT
                     ILAGSDGWRNAINAYLAEQNKHRNEF"
     gene            3284..4234
                     /locus_tag="PXE26_001764"
     CDS             3284..4234
                     /locus_tag="PXE26_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594329.1"
                     /translation="MTTANQQFELILKTESRVVSTNLQTFEEQANQYLATLTTTFETD
                     DDFAKAKEEVKELESIEKKIRDAIKQTQTGEIAELVLTAEQIAERFRQERLTRDKLVK
                     SKETEIKKQIADKAIEEITDTRNKLVKVSDISLALEITMPKHGIANRIAEAQKNKRTI
                     DSLTKAVNAEKALIISEMSVEIGRLTERLEQLAAKSAYLFPDAVKLIATQDDLAPIIQ
                     QRLAEEAEREAAIKAKAEADKVQAEAKAITDKMERKQAVENPQNVAKMNIEEPAQTDG
                     PLGDFIITIRLNQTIQTNAVSIARELKAKFGDSVSLNKAK"
     gene            4275..5069
                     /gene="bet"
                     /locus_tag="PXE26_001765"
     CDS             4275..5069
                     /gene="bet"
                     /locus_tag="PXE26_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage recombination protein Bet"
                     /protein_id="HDL5594330.1"
                     /translation="MTTALQTLTNKLAERFEMGDGSGLVETLKSSAFAGATVSDAQMI
                     ALLVIANQYQLNPWTKEIYAFPGGNGGLTPIVGVDGWVRIINREPQYDGMEFHFTDDY
                     SACTCTIYRKDRSKPIVVTEFMGECKKSSPAWNSHPKRMLRHKAMIQCARLAFGFTGI
                     YDQDEAERIAENEKPPKNITPQNNVVETTAVELISEEQLSQIRQLMQVTGTEEAKILA
                     YIGVQALNQIPKSQAEAVIKKLNLTLDKQNAEKADNGESVGEEIPL"
     gene            5066..5701
                     /locus_tag="PXE26_001766"
     CDS             5066..5701
                     /locus_tag="PXE26_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaJ viral recombinase family protein"
                     /protein_id="HDL5594331.1"
                     /translation="MTGDLIILDCEQGSEEWLNARLGIPTATGIENIVTPSGKKSSAW
                     NSYLAELVAESIEGAKDGFKSSDMARGNELEPLARMAYEFETDTEVVQVGGVYLNAEK
                     QLMVSPDGLIPNLKKGLEIKCPKMKTHIKYLLEGGVPNEYLIQVQSALWVTGYETWDF
                     VSYCPEYQKQPLYIYTAERDPVLMKAFDQYIPQFIKSLYALKGVTAPKGAF"
     gene            5714..5890
                     /locus_tag="PXE26_001767"
     CDS             5714..5890
                     /locus_tag="PXE26_001767"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594332.1"
                     /translation="MTTQKKYELLQNDTINHNGRTLYRIKAICHFRRTAEYSARATHA
                     TAAECYGGIACTST"
     gene            5911..6363
                     /locus_tag="PXE26_001768"
     CDS             5911..6363
                     /locus_tag="PXE26_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDL5594333.1"
                     /translation="MKPFDLNKALAGEPVKLRNNDKAFVKYLISDDYIRDNKDHQVQG
                     YTVDEENVFLSEVSWAVSGSHFNDGTIAQYDIVGMWEEPRPAVTLTLPCPLKEPQENM
                     WFIDNDFTIVKSMFANAPFVKKFLPQGRCFASEEDAQEWLDAMRNSRR"
     gene            6441..6968
                     /locus_tag="PXE26_001769"
     CDS             6441..6968
                     /locus_tag="PXE26_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HDL5594334.1"
                     /translation="MNEEKYFSVDVSDETHVIRLHETLEQAKQSCLNGATEAYEFAGD
                     MDDHESYESYEAYDLPYAVYGVVLGRAKSDIRPLTDEERASELFGEAEQVIEPPTLLE
                     NNGWISIEDKLPPIETDVLGLCDISGMQLILIVSRELADNEWYFLSVNQYGLDDDVIA
                     VTHWQPLPEPPKEEK"
     gene            6965..7168
                     /locus_tag="PXE26_001770"
     CDS             6965..7168
                     /locus_tag="PXE26_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594335.1"
                     /translation="MTDTERLDFIAQRKLDVRYSDLVDEFIIASYTKPHEQYFHWARN
                     ADLRTAIDEAMKEMRGLNNATTN"
     gene            7152..7616
                     /locus_tag="PXE26_001771"
     CDS             7152..7616
                     /locus_tag="PXE26_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL5594336.1"
                     /translation="MQQLIKNIEQWAEDRNLINGSTPQKQMLKLMEEFGELCGGIARN
                     NPEMIKDAIGDLIVVCIIKAKQEKQPIYPVQFENHRLNGYRFDISVAVHCLYDIERIK
                     DRGKYSRFFGILHHLALINRFTLNDCLAHAYDQIKDRKGEMQAGIWVKEDDL"
     gene            7710..7880
                     /locus_tag="PXE26_001772"
                     /pseudo
     CDS             7710..7880
                     /locus_tag="PXE26_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253375.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            8116..8607
                     /locus_tag="PXE26_001773"
     CDS             8116..8607
                     /locus_tag="PXE26_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5594337.1"
                     /translation="MQTKPILDACCGSRMFHFDKQNPLVLFADNRQIETTMKDRDKIR
                     HLEIKPDVLHDFTNMPYENESFWHIVFDPPHLVQGGENSWLVKKYGKLPCNWREVLKK
                     GFDECMRVLKPNGTLIFKWNETQIPVSEILKVIDCQPIYGHKSGRLNQTHWLAFVKIE
                     QSL"
     gene            8634..8891
                     /locus_tag="PXE26_001774"
     CDS             8634..8891
                     /locus_tag="PXE26_001774"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594338.1"
                     /translation="MEQIKLSEKAERALILSQLNENSAMIIDLDDVALILNCGYDYVQ
                     SKISKKPGFPEPVQGINGKSVLFKSGDVIRWVNRQARTRKN"
     gene            complement(8888..9877)
                     /locus_tag="PXE26_001775"
     CDS             complement(8888..9877)
                     /locus_tag="PXE26_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL5594339.1"
                     /translation="MASIRKRGSKYQVEISKKGVRKSATFRTKAEAQAWAYEEERKIE
                     IISKGGVVDILFAEALERYQNEVSINKRTWRREIGRINNILKEPIANRYVQDIKRDDI
                     EDWIEARLKRGLKGSSVERDLSILSNVFTYCLKRWGYISENPMIGVIHPNKVPPRKQR
                     YSQEDIDKILEVSKYREDIKRSNARLAAAMLFAIETAMRAGEISGLTWDNVNFEKRIA
                     HLPMTKNGSSRDVPLSSKAIEILKRLETIKKDNSVFQLPQGNGLSARFFELKEKAGLS
                     YLNFHDTRREALSRLAKKVDVMTLAKISGHKDVKILLNTYYAPNMEEVAHLLD"
BASE COUNT         3437 a         2056 c         2041 g         2562 t
ORIGIN      
        1 aacaaccttt ctaaaaataa tttctcttta aaatcaatta tttaatcacg aattgaaatt
       61 tgtttggcta aaataattac aaattgaatt gacttaatga tttcaatttg tgataataaa
      121 cccatcaaaa caaacaacgc cacagacaaa gaggaaacca aaatgaacgc acaagcaacg
      181 ctaaataacc acaaagacta cattttatgc ggacgcaaag aaaaacgcac cagtgatttc
      241 atcaatgtgt ttgaggtctt tgaaaatgaa gccacgcaag agtttgtgat tgaaagagca
      301 atgttcagaa atggcaagtt aatcgactgg aaccaaagcg acaaaatgaa cgccgagcaa
      361 gctcaacaac tttggcaagc ctacattcac taagaatttt tatcaaagcc cttcacggag
      421 ggcttgaata aaggttctaa acctcgccga aaggcattgt tctttaaaaa ttaaaccaaa
      481 aacacatcac gacaagcgga ttacttagca atgtaatgac attggagaga cagaaccaat
      541 ctttgcataa agcggtaaaa cgtatgcggt aaatgaactt ataggcaagt tgtgaaactc
      601 tctaagctac tcggactgaa agaatagtac ggtagttgtg gcgaatttac tggtgatgtg
      661 cgaactagcg gaaaggttaa gcactggcag tgaatcggga agcacaaacg ctggttcaat
      721 tccaaagcat atttgagaaa gtgtgctttg gaatattaat aacaggagaa caaaatgagt
      781 aatcaggaat ttgttaaatt aggcagcgtt gaaccttcaa cgattgatga attacagaaa
      841 gaagatatta ggcaggcaat attaaaatcc gtctctataa cgccatatta tgtggggctg
      901 gaaatagcgg tttgccaagc aatatcagcc atcaataaat ttagtgatgg ctgtattaca
      961 gaagagcttt tagatacgaa aaatggtgat aaataccgaa aaaataacta atcaataaca
     1021 ccaaagtgat ttcatttttt cggcattagc cctagatgtt gcccaagtat tatattcctc
     1081 gaagttgtgg caaacaagag gacttggccc ggtggctcac aagtataaaa aagagccacc
     1141 atctctaaca gctctcaaca gagagtgaga caaataaccc cgttttagtt ttaatgtttt
     1201 ctaaagttgg cgttaggcag cgaaacgaat gtactagaga gttgttagag atggttagtc
     1261 catcacattc cttagattga agtaagccct gccgttgggg ttaagcaacg gtactttgac
     1321 cgcatagttc agtggataga gcagctgcct tctaagcagt gggtcgagag ttcgaatctc
     1381 tctgcggtcg ccatccaaaa ccgctttacg cacatcatcg atgacgagcc tacgaagtgg
     1441 aaacctaccg tgtagagcgg ttttgaatgg ctaagttgtg taactgctac aacttaaaaa
     1501 gagcggttga taataaacat aatgactccg tttccccgcc tcgtgcgggg ctttttttat
     1561 ccacataaaa ggattcaaaa tgaaaactaa atacaaaatt attattgagc gagcaaaaca
     1621 acagggtttg acccatattg agcttactca aaaacattgt ctgtatctcg ctacatcagt
     1681 agggaaactg tgctacgggg tagctaataa tgcagaacaa catattaaac ttgctgctgg
     1741 agagattttt acactactaa cgatcattaa ccatcaaatc cagttcgatg aagacttaga
     1801 gcttcacacg tggaaagcta gtggaacaac cccacccgag caaagagcga tacgtatgtt
     1861 acatcatacc tcgcaatttg cttggtttgc tccttggtta gtggacagca atgaaaaaga
     1921 acaaaaccaa aatacaatca ggattaattt atttaacaaa tgctctggga ttctgattga
     1981 actaaatggc attcttaaag aatacgagct aactcttgat gagtgcttag atgaattctt
     2041 gaaaaataag cattgtttga atgaatttag tattcacaag gagtaaaaaa tgacgacgtt
     2101 tagtatttat accagtgtat ggcacgacag ctccacgaaa ggctttcgcc acaacattaa
     2161 gcataaacgc cacgattgct ggagagcgga tatccgcata aagcaaaaaa tcaatgatgt
     2221 gtgggtgcag atttcaagga tacgcaaacg cttcaagtgc cctgaacagg caaaatcctt
     2281 tgtagaacaa tggaaacaaa ttgattcacc tgcatttatg caacaccaaa tcaaccgcca
     2341 agcattaaga gaagaattat caaaccttga gcaacgcaaa cagaagcaag acggaatact
     2401 tgaggtgatt gagtatcgta ttagccaaat caaggagttg ctgaaatgaa acgcaataaa
     2461 gtagaaagct atactatccg cttattaaaa aataatcata caaaacgcta cttcggagaa
     2521 gttatattaa acggcataaa agaaatcagc acggcagaga tgatgtctga aattaacgct
     2581 attaaggcag taaataagcg cattgaagct ctgaataaaa ccaaagccgt taatttgcct
     2641 aattatcctg aaatccgggg tcatcagcct attatgtaca attacaattt tgaacaaatt
     2701 gaggaagatc ctgaacaggt taagcctaaa ccatcaaaac caaaacgcaa gccattcata
     2761 ccttatgggc taaacggcta ctttgtggat agcaacggta atattcgctt acatctagac
     2821 agacgagcaa gtgccgaaac aattaccctt gaaactgatt tcttcaacgt tcttgccgaa
     2881 atggtaaaac gtacacaaga ggcaaacaat gctaaacatg cttagacaat ggattaaata
     2941 cggcttatac gccctgcttt ttatggttgc catcaccctc ctaatgcaat gaagagctta
     3001 tccctgaaag cacctgcaag cctgaaactt gcgaatttaa agtaacggag aaagtgtgat
     3061 gataggatac gaagactaca cagatgcttc acttcaacca gaagaagacc ctagcgaaga
     3121 ggctttcatc ttggctgaag aaaacatcat cgagctatta gaaaacaacg gctttgaaac
     3181 cattgccacc atcctagccg gttctgatgg ctggcgtaac gcaatcaacg cctacctagc
     3241 cgaacagaac aaacacagaa atgaatttta gaggaataag aaaatgacaa ctgcaaatca
     3301 acaatttgaa cttattttaa aaaccgaaag ccgagtggtt tctaccaact tgcaaacttt
     3361 tgaagagcaa gcaaatcaat accttgccac gctcaccacc acctttgaaa ccgatgatga
     3421 ttttgcaaaa gcaaaagaag aagtgaagga gcttgaaagc attgagaaaa aaattcgtga
     3481 cgcaattaaa caaacgcaaa ctggcgagat tgcggaattg gtattaacag cagaacaaat
     3541 cgctgaacgt ttccgccaag agcgattaac ccgagacaag ctcgttaaga gcaaagaaac
     3601 ggaaatcaaa aaacagattg ccgataaagc cattgaagaa atcactgata ccagaaacaa
     3661 gctggttaaa gtaagtgata tttcccttgc cttagaaatc acaatgccaa aacacggcat
     3721 tgctaatcgt attgccgagg cacagaaaaa taaacgcacg attgacagct taaccaaagc
     3781 cgtgaacgcc gaaaaagcgc tgattatcag cgaaatgtcg gtagaaatcg ggcgcttgac
     3841 tgagcgatta gaacagcttg ctgcaaaatc agcttatctt tttcctgatg cagtgaaatt
     3901 gatcgcaacc caagacgacc tcgccccaat tattcaacaa cgccttgccg aagaagccga
     3961 gcgtgaggcg gcgattaaag ccaaagcaga agccgacaaa gtacaagccg aagccaaagc
     4021 gattactgat aaaatggagc gcaaacaagc ggtcgaaaat ccgcaaaatg tggcaaaaat
     4081 gaacatcgaa gaaccggcac aaaccgatgg gccattaggc gattttatca ttactattcg
     4141 cttaaaccaa acaatccaaa ccaacgcagt cagtattgct cgtgagctga aagcgaaatt
     4201 tggggatagc gtttcgctca ataaggctaa atgatttgat accgcacaaa ttcaacctaa
     4261 ataaggatca tattatgaca actgcattac aaacactaac caacaaactt gccgagcgtt
     4321 ttgaaatggg agatggctca ggattagttg agacacttaa atcgtctgct ttcgcagggg
     4381 caaccgtaag cgatgctcaa atgattgcac tattggttat tgctaaccaa taccaattaa
     4441 acccttggac aaaagaaatt tatgcattcc ccggtgggaa cggtggatta acgcctattg
     4501 tcggcgttga tggttgggtt cgcattatta accgtgagcc tcaatatgat ggaatggaat
     4561 ttcattttac cgatgactat tccgcctgta cttgtactat ctaccgtaaa gatagaagta
     4621 aaccgattgt ggtgacggaa tttatggggg aatgtaaaaa gagctctcca gcttggaact
     4681 ctcacccaaa aagaatgtta cgccataaag caatgatcca atgtgcaaga ttagcctttg
     4741 gctttacggg tatttacgac caagacgaag cagagcgtat tgcggaaaat gaaaaaccac
     4801 ctaaaaacat cacaccacaa aataacgtgg tagaaaccac tgccgttgaa ctcatttcgg
     4861 aagaacaact gtcgcaaatc cggcagttaa tgcaagtaac cggtacggag gaggcgaaaa
     4921 ttctcgccta tattggcgtt caagcactga accaaatccc taaatcgcag gcagaggcag
     4981 tgattaaaaa gctcaatctt acgctagaca agcaaaacgc tgaaaaggcg gataatggcg
     5041 aaagtgtcgg tgaggaaatc ccactatgac aggcgattta atcattttag attgcgaaca
     5101 aggatcagaa gaatggctca atgccagatt gggcattccc accgccacag gcattgaaaa
     5161 tatcgttacg ccaagcggta aaaaatcgtc cgcttggaat agctatcttg ccgaactggt
     5221 tgccgaaagc attgagggag caaaagacgg ttttaagtcg tctgatatgg cacgaggcaa
     5281 cgagcttgaa ccgcttgcac gaatggctta cgagtttgaa accgacaccg aagtcgtgca
     5341 agtcggcggt gtgtacctta acgccgaaaa acagttaatg gtaagtcctg acggcttaat
     5401 tcccaatcta aaaaaagggt tggaaatcaa atgcccgaaa atgaaaaccc acatcaaata
     5461 cctgctagaa ggcggtgtgc cgaatgaata tcttattcaa gtgcaatctg ccctttgggt
     5521 aacaggctac gaaacgtggg actttgtcag ctactgcccc gaataccaaa aacaaccgct
     5581 ttacatctac acagccgaac gtgatccggt attgatgaaa gcctttgatc aatatatccc
     5641 gcaatttatc aaatcccttt atgcattgaa gggggtaacc gccccgaaag gggcttttta
     5701 ataggtagcc aatatgacaa cccaaaagaa atacgaacta ctccaaaacg acacaatcaa
     5761 ccacaacggc agaacactct accgcatcaa agccatatgc cactttaggc ggacggctga
     5821 atattccgca agagccactc acgccacagc cgctgaatgc tatggtggaa ttgcctgtac
     5881 atcaacataa ccacaaacac ggagaataaa atgaaaccat ttgatttaaa taaagcattg
     5941 gcaggtgagc cagtaaaact aagaaataat gataaggcat ttgtaaaata cctaattagt
     6001 gatgactata ttagagataa taaagaccac caagtacaag ggtatacagt tgatgaagaa
     6061 aatgtatttt tgtcagaagt atcgtgggct gttagcggat ctcatttcaa tgatggaaca
     6121 atagctcaat atgatattgt tggtatgtgg gaagaaccaa gaccagcagt aacattgacg
     6181 ttaccttgcc cattaaaaga acctcaagaa aatatgtggt ttattgacaa tgattttacc
     6241 atagtaaaat ctatgttcgc aaatgccccc tttgtaaaaa aattcttgcc acaagggcga
     6301 tgtttcgctt cagaagaaga cgctcaagaa tggttagatg caatgcgaaa tagtcgtagg
     6361 taaatcggca gcactaacag ctgaatgctg ctgttgaatt tcttgtatat ccacataaac
     6421 acggaacgcg gagaaagaaa atgaatgaag aaaaatattt ttcggtcgat gtctcggatg
     6481 agacacatgt aataaggttg cacgaaacat tagagcaagc aaaacaaagc tgtttaaatg
     6541 gtgctactga agcctatgag tttgcgggtg acatggatga tcacgaaagc tatgaaagct
     6601 atgaagccta tgatttaccc tatgcagttt atggtgttgt tttaggtaga gcaaaatcag
     6661 atattcgtcc actaacagac gaagaaagag catcggagtt atttggggaa gctgaacaag
     6721 ttattgaacc accaacactt ttagaaaaca acggctggat ttccattgag gacaaattac
     6781 cacctattga aacggatgtg ctagggttat gcgatatttc aggaatgcag ttaattttaa
     6841 tagtttcaag agaacttgcc gataacgagt ggtattttct tagtgtaaat caatatgggc
     6901 ttgatgacga tgtgattgca gtaacccact ggcaaccact tcccgaacca ccaaaggagg
     6961 aaaaatgacc gacaccgaac gcttagactt tatcgcccaa cgcaaattag atgtccgata
     7021 ttctgatttg gtggacgaat ttattattgc tagctatacc aaaccgcacg agcagtattt
     7081 tcattgggca agaaatgccg atttacgcac ggcgattgat gaagcaatga aagaaatgag
     7141 aggactaaac aatgcaacaa ctaattaaaa acatcgaaca atgggcggaa gaccgcaatt
     7201 taattaacgg ctcaacccca caaaagcaaa tgctcaaact gatggaagag tttggcgaac
     7261 tctgcggagg cattgcccgc aataatcctg aaatgattaa agatgcgatt ggggatttga
     7321 ttgttgtctg tattattaaa gcaaaacaag aaaaacaacc tatttaccct gtacaatttg
     7381 aaaatcatag attaaatggt tacagatttg atatttcggt cgctgttcat tgtctatatg
     7441 atattgaacg cattaaagac agaggtaaat atagccgttt ttttggcata ttacaccatt
     7501 tagccttaat aaatagattt acgcttaatg actgcctcgc tcacgcctac gaccaaatca
     7561 aagatcgcaa gggcgaaatg caagctggga tttgggttaa agaagacgat ttatagtacc
     7621 taagctataa aaaccgaaac atcttgcaga aaagcattcc gccactctat aagagtttcg
     7681 gtttcttctt cgttggcgtt gattatgttt acacgcacgc taccgagtat caaaccacgc
     7741 ttggcgtaat gaagcggata cttgaaccga tgttagccga cttcgaggtc gatccgtttg
     7801 aagaggctca ctaccacaaa gccctaacta ccttaaggca ataccagccg aaaggcttag
     7861 gcggcttagt ccgaatttaa tttgcaaaaa aatcacacaa tccgaccgct tgtgaaacaa
     7921 caagcggcgg atttccatac ccaaattttg aggacaagcc gatgaaatac gcaaaaatca
     7981 ttctattttt aaccgccttt gcagttgctg ctgaccatct agagttacgc aacgactgcg
     8041 atggcaaaat ttgtatggct caacgctaat taacccaacc gcttgttccg caagcggtta
     8101 ttttttggag gaaaaatgca aacaaaaccg atattagatg cgtgttgtgg ttcccgtatg
     8161 tttcattttg acaagcaaaa tccactcgtc ctgtttgctg ataatcgaca aatagaaacc
     8221 acaatgaaag accgagacaa aatccgccat ttagaaatca aacctgatgt tttacacgat
     8281 ttcacgaata tgccatacga aaacgagagt ttttggcaca ttgtttttga tccgccacat
     8341 ttagttcaag gtggagaaaa tagctggctt gtaaagaaat acggcaaatt accttgcaac
     8401 tggcgagaag tcttgaagaa aggctttgac gaatgtatgc gagtgctaaa accaaacggc
     8461 acgcttattt tcaagtggaa tgaaacacaa atccccgttt cagaaatttt aaaagttatt
     8521 gattgtcagc cgatttatgg acacaaaagc ggacgcttaa accaaacaca ttggctggcg
     8581 tttgtgaaaa ttgagcaatc cctctaaatg aggggtttat ttttggagag aatatggaac
     8641 aaattaaact ttcagaaaaa gcggagagag ccttaattct ttctcagctc aacgaaaatt
     8701 cagcaatgat tattgattta gatgatgttg ccctgatttt gaattgcgga tatgactatg
     8761 tgcaatccaa gatcagtaaa aagcccggtt tcccagagcc agtgcaaggc attaacggga
     8821 aatcagttct tttcaaaagt ggcgatgtta tccgttgggt caaccgtcaa gcacgaacac
     8881 gcaaaaatta atccagcaaa tgagcgactt cttccatatt tggggcgtag taagtgttaa
     8941 gcaaaatctt cacatcttta tgccctgaaa ttttggctaa ggtcatcaca tcgacttttt
     9001 ttgccaagcg tgaaagagcc tctctcctcg tgtcgtgaaa attcaaataa gaaagcccag
     9061 ccttttcttt taactcaaag aatctagcac ttaaaccatt cccttgtgga agctgaaaaa
     9121 cggaattatc ctttttgatg gtttccagtc ttttcaagat ctcgattgcc tttgatgata
     9181 acggaacgtc tcttgatgaa ccgttttttg tcataggcaa atgagctatt cttttctcaa
     9241 aattcacatt atcccacgtt aaacccgaaa tctcaccggc acgcattgcc gtttcaatcg
     9301 caaataacat agccgcagcc aatcgagcat tagagcgttt aatatcttct cggtatttgc
     9361 tgacttctaa gattttatca atatcttcct gggaataacg ctgttttctt ggtggcactt
     9421 tgtttgggtg aataacaccg atcatcggat tttcactaat atagccccag cgttttaagc
     9481 agtaggtaaa tacattgctt aaaatagaca aatccctctc aacacttgag ccttttaacc
     9541 ctctcttcaa tctagcttcg atccaatctt caatatcatc tcgcttaata tcttgtacat
     9601 aacgattcgc aataggctct ttcaatatgt tattgattcg acctatctct cgtcgccacg
     9661 tcctcttatt aatcgatact tcattttgat accgctctaa cgcttccgca aataaaatat
     9721 caactacccc acctttcgag atgatctcta ttttacgctc ttcttcgtaa gcccatgcct
     9781 gtgcctctgc ttttgtgcgg aaggtagctg attttctcac ccctttcttc gagatttcga
     9841 cttgatattt actgccccgc ttgcgaatgc tcgccatatt tttacctgcc ttttgtcgta
     9901 aatttgtcgt aatttatacc atacaataac cgacaataac agataataac cgattttatg
     9961 aaatcatctt aaggcaaaga agagaggaaa aacttaagat aacctattga aataactata
    10021 ataaacgata ataaccgaca aaaaacggaa ataaaaaaaa gcccctaatc aaaaaagcga
    10081 aaaggggcgg aagtct
//
LOCUS       DANLZD010000097         9989 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.097, whole genome shotgun sequence.
ACCESSION   DANLZD010000097 DANLZD010000000
VERSION     DANLZD010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9989)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9989)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9989
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.097"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(6..1730)
                     /locus_tag="PXE26_001776"
     CDS             complement(6..1730)
                     /locus_tag="PXE26_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005824196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HDL5594340.1"
                     /translation="MPNSTAQHSTAQHSTAQHSTAQHSTAQRDLNADTSQAFLNELDQ
                     TLWTAADKLRKNLDAANYKHIVLGFIFLKYISDSFTDFQAKLKTQLTTPESELYLDPA
                     LFDEQEFSQILAEELEQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDELPWGDKFKG
                     VSRLIDDAFEAIERENPKLKGVLQRIAGFGVPDEMLTGLIDLFSRTNFTQPMHNGEPV
                     HLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEMLEPYSGRIYDPAMGS
                     GGFFVQADRFIQAHAGNRNAISVYGQESNSTTRKLAVMNMAIRGIPFDFGDKPEDTLL
                     NPLHIDKKMDVVMANPPFNQKEWWNESLANDPRWAYGTPPQGNANFAWLQHMIYHLSP
                     KGKMALLLANGSMSSQTSGEGDIRKNIVQADLVEAMIALPNQLFTNTQIPACIWIINK
                     AKARKGEVLFINATQIGYLKDRVLRDFTADDIAKISDTYHNWQKQNGYENIPAFCYCA
                     TLDEIAKNDFVLTAGRYVGAVQEENDGVPFAEKMQELTALLNEQFKQGRELEQQIAEN
                     LKGLGYGI"
     gene            1908..2285
                     /locus_tag="PXE26_001777"
     CDS             1908..2285
                     /locus_tag="PXE26_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacL family protein"
                     /protein_id="HDL5594341.1"
                     /translation="MEYQFTHSIHGVVAKCSMDHEAFARWLNAEITENPSQLAPIFAE
                     IEKCRAAFPNHYECVFEGREYSLYFDYDEVMAKANNLDAAFDDEEMEEGFQFYNEESI
                     AFCGLDDFEKFLKAYQHFVQTYH"
     gene            2374..2961
                     /gene="yihI"
                     /locus_tag="PXE26_001778"
     CDS             2374..2961
                     /gene="yihI"
                     /locus_tag="PXE26_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Der GTPase-activating protein YihI"
                     /protein_id="HDL5594342.1"
                     /translation="MSRTKKTRRITDIMPARKTDKPKQPMPKLGGGKNRKLTRYELDA
                     QAREEKRKRKHKGLPTGSRNADPAEQKKAVVKEVKDPRIGSRKKVPLMVEFVNQPEKG
                     RTIKAVPVEPIKPTLSPEQELEQLENNECLNQLLDDLEAGKTLSAEDQKFMNECLDRI
                     DELMTELGIEYEDEEGDNGDALLRQFETMDINKFR"
     gene            2975..3442
                     /locus_tag="PXE26_001779"
     CDS             2975..3442
                     /locus_tag="PXE26_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2489 domain-containing protein"
                     /protein_id="HDL5594343.1"
                     /translation="MLRIFLMVLAALILISLGGYALHLMLKVRAQKKHEQALIEQAKQ
                     AQKDRYIRILDSIEVIARAMISEQCDFSEGVLRLKPLLDVLGRKLSDYTAMWALYGVV
                     ENMPILDERKNLKRNERMKLDLEREAKEAELESDIKNECYQLLKDIEEMRKAI"
     gene            3442..4809
                     /gene="hemN"
                     /locus_tag="PXE26_001780"
     CDS             3442..4809
                     /gene="hemN"
                     /locus_tag="PXE26_001780"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HDL5594344.1"
                     /translation="MSEIIWDLALIQKYNHSGPRYTSYPTALEFNENYTNEDFIRAAA
                     RYPERPLSLYVHIPFCHKLCYFCGCNKVITRHRHKVEIYLDYLEREIKTRAPLFQNRL
                     VTQIHWGGGTPTYLDEDQSARLMQMLRANFDVSDDAEISIEMDPREIELSMLDHLRAI
                     GFNRLSMGIQDFDKEVQRLVNREQDEEFIFALMKRAKELGFVSTNVDLIYGLPKQNVE
                     SFMYTLKRVVELNPDRMSVFNYAHLPSRFAAQVKIKEELLPAPETKLTILQNSIEFLG
                     KNGYKFIGMDHFAKPDDELAIAQEKGILHRNFQGYTTQEECDLLGMGVSAISLLGDTY
                     AQNRKELQQYYADVETNGIALHKGIALTQDDCIRRDVIKALICNFKLDFATIEKQYGI
                     DFKRYFAEDLAFLAPLAEDELLTMNDDSIVVSPRGRLLIRNICLCFDVYSRQLARRQQ
                     FSRII"
     gene            4883..7216
                     /gene="lptD"
                     /locus_tag="PXE26_001781"
     CDS             4883..7216
                     /gene="lptD"
                     /locus_tag="PXE26_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HDL5594345.1"
                     /translation="MKQRYSLLSLAVMAACYSNSAAADLKQQCLLGVPHFQGEVVEGD
                     QLRMPVTIEADSAVINQPRDATYTGDVTIKQGNRSIWADQVRVEQDGENARMAYLQGN
                     FNYQDNLIQATGSDATINLLSKDANLANANYQLIGRQGRGTAESGEFGNSKHTLKNAS
                     FTSCLPNDNSWQIEANEMIQHVDEEYAEMWHARFKVLGMPVFYSPYLQFPIGDRRRSG
                     LLIPSFERSSKNGWTYSQPFYWNIAPNMDSTITPTYYSRRGWQISPEFRYLTKIGQGL
                     VATEYMAKDRLSEYQPGNDDRKRYLFHWRHAMSFLTDWRFSVDYTKVSDRRYFSDFDS
                     DYGSSTDGYATQNFKLGYYQPNYNISISGKKFQTFDELDIGPYRVLPQIDFNYYKNDL
                     IKGGDFKFFAQAARFENDSKLMPKAWRFHAEPTLNFPLANRYGSLNLETKLYATYYQQ
                     TKGSESTEEIKKSVSRVLPQIKLDFKTVLESDKQLFSGYTQTLEPRVQYIYRPYKDQS
                     DIGSKAHRSVSLGYDSALLQNDYFSLFNDRRYSGLDRISSANLVTAGGTTRFFKEATG
                     EEVFNFSLGQTYYISPSKIDDTSDNSTKGHTTSWAAESNWKFHKNWNWHGSYQYDTRL
                     NQTALANMSLQYKPQSDKLIQLNYRYASKDYINQNLNTNKYGQSIKQVGGVLGWELTD
                     KVSVMTSYYHDLALKKPVEGQISLNYNTCCWAANVYVARRLVSTPVGSSDTINDFYYD
                     NKFGINFELRFGTNYSNGVTRMLKRGIIPYTEPYSIN"
     gene            complement(7358..9958)
                     /gene="ppc"
                     /locus_tag="PXE26_001782"
     CDS             complement(7358..9958)
                     /gene="ppc"
                     /locus_tag="PXE26_001782"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HDL5594346.1"
                     /translation="MLGEFLGETIRDAQGNYILELIESIRVLSRNSRAGDENAREQLL
                     DKLANISNDDVLPVARAFSHFLNLTNIAEQHQTVSRHHIDESLGSRSLDSLFLRLKSQ
                     NIPVEKVIKTVESLMIDLVLTAHPTEVTRRSLGHKHVEINKCLNLLEHDDLTEAESYK
                     IKRRLMQLIALAWHTNEIRTQRPTPVDEAKGGMAVIENSLWKAVPEFCRQLNFYLEKH
                     FGVQYPVNLAPVRFSSWMGGDRDGNPFVTAETTRRVLRMNRWKATELFLQDIKNLAEE
                     LSITQCTPAFRAKYGNHLEPYRVLLKVLRQKLINTEIYYAELLEGKISTIDESDILTS
                     DQQLWEPLFDCYESLQACGMRIIANGALLDCLRRINCFGLGLSRLDIRQESTRHEMAI
                     AEITRYIGLGDYAHWTEDDKQAFLVRELSSRRPLIPTNWTPSPETKEVLDTCKIVAEQ
                     PEGVISAYVISMAREASDVLSVHLLLKEAGCKFTIPVAPLFETLGDLDHSEKVMTDLF
                     NIGWYRGVINNYQMIMIGYSDSAKDAGMLAAGWAQYRAQEALVNLCEKYNIELTLFHG
                     RGGTIGRGGAPAHAALLSQPPRSLKNGLRVTEQGEMIRFKLGLPAVAVESLELYASAI
                     LEANIFPPPEPKQQWRDVLAKASDISCQIYRDMVRGELDFVPYFRSATPEQELSRLPL
                     GSRPAKRNPKGGVESLRAIPWIFAWMQNRLMLPAWLGAGQALQQLIDEGNETLLKEMC
                     NEWPFFSTRIGMLEMVFSKADIWLAEYYDQRLVEPKLHRLGNMLRTQLQADLKTVLAL
                     AHDGQLMADLPWIAESIALRNIYTDPLNLLQVELLDRIRKQGENADPVLEQALMITIT
                     GIAAGMRNTG"
BASE COUNT         2869 a         1975 c         2286 g         2859 t
ORIGIN      
        1 actgattaaa tgccatatcc caaccccttt aaattctctg cgatttgctg ttccaattcc
       61 cgcccttgtt taaattgttc attcaataaa gcggtcaatt cctgcatttt ttctgcaaac
      121 ggcacgccgt cattttcttc ttgtaccgca ccgacatatc gccctgcggt cagcacaaaa
      181 tcgtttttgg cgatttcgtc cagcgtggca caataacaaa acgcagggat attttcgtag
      241 ccgttctgtt tttgccagtt gtggtaggtg tcgctgattt tggcgatgtc atcagcggta
      301 aaatcacgca agacgcggtc cttcaggtag cctatttggg tggcgttgat aaacagcact
      361 tcaccttttc tggctttggc tttattgata atccaaatgc aggcagggat ttgggtgttg
      421 gtgaatagct gattgggcag ggcaatcatc gcttcgacaa ggtcagcttg cacgatgttt
      481 ttgcgaatgt cgccttcgcc tgaagtttgg ctgctcattg agccgttggc gagcaggagt
      541 gccattttgc ctttggggga gaggtggtaa atcatatgtt gcaaccacgc aaagttggcg
      601 ttgccttgcg gcggtgtgcc gtatgcccag cgtggatcgt ttgctaggct ttcattccac
      661 cactcttttt ggttaaaggg cggatttgcc atcacaacat ccattttttt gtcgatgtgc
      721 aaagggttta gtagggtatc ttcgggcttg tcgccaaagt caaagggaat accacgaatc
      781 gccatattca tcaccgccag tttgcgagtg gtggagttgg attcttgccc ataaacggaa
      841 atggcgttgc ggttgcctgc gtgagcctga ataaagcggt cagcttgcac aaaaaagccg
      901 ccgctgccca tagctgggtc gtaaatccgc cctgaatagg gttcgagcat ttcaacaatc
      961 agggtaacga tggattttgg cgtgaagtat tgaccgcctt ttttgccttc ggcaagggca
     1021 aattgcccaa gaaagtattc atagacgtgc cctaaaatgt ctttggcttg cagatgcaca
     1081 ggttcgccat tgtgcatagg ctgggtgaaa ttggtgcgtg agaacaggtc aattaagcct
     1141 gtgagcattt catcaggcac gccaaagccg gcaatgcgtt ggagtacgcc tttgagtttg
     1201 gggttttccc gttcgatggc ttcaaaggca tcatcaatca agcggctgac acctttaaat
     1261 ttgtctcccc aaggcaattc atcgccaaga ttgagtttgc ttaatgattt gatgttgtcc
     1321 cagcgggctt gctccggcac ccaaaagatg ttttcagcgg cgtagtaatc tctctgttcc
     1381 aactcttcgg caagaatttg gctaaattct tgttcgtcaa atagtgcagg gtcaagatag
     1441 agttcgcttt cgggggtggt aagctgggtt tttagcttgg cttggaaatc ggtaaagctg
     1501 tcggagatgt attttaggaa gataaagcca agaacgatgt gtttgtagtt ggcggcatcg
     1561 aggtttttac gcagtttgtc ggcggcagtc cagagggttt ggtcgagttc gtttaaaaag
     1621 gcttgacttg tgtcagcgtt gagatcacgc tgtgctgtgc tgtgctgtgc tgtgctgtgc
     1681 tgtgctgtgc tgtgctgtgc tgtgctgtgc tgtgctgtgc tgtttggcat agtagttcct
     1741 ttttgatgta tcaatactaa aaataacctg tattattcta gcagatttct gggtaatcga
     1801 ggagttgata acatttaaaa attagcgttt tgcaaaattt tccaaaaaaa gaccgcttgt
     1861 taggctataa tagccaacca aacagaccaa ttcaaaggag aatcggtatg gaatatcaat
     1921 ttacccatag tattcacggg gtggtggcaa aatgttcgat ggatcacgag gcgtttgctc
     1981 gttggttgaa tgccgaaata acggaaaatc ctagccagtt agcccctatt ttcgctgaaa
     2041 tagagaagtg tcgagccgca tttccgaatc attatgaatg tgtgtttgaa gggcgggagt
     2101 atagtctcta ttttgattat gatgaagtga tggcaaaagc aaacaattta gatgctgctt
     2161 ttgatgatga ggaaatggaa gaaggctttc aattttacaa tgaagagagc atcgcatttt
     2221 gtggcttaga tgactttgag aaatttttga aagcctacca acattttgtg caaacttatc
     2281 attgattgaa atgattaatt gaaaccaaag ctattaaggg aatctaattc cttgtagaat
     2341 agccgtttat agcaatttta agatattaaa tttatgagtc gtactaaaaa aacacgtcgt
     2401 attaccgaca ttatgccggc aagaaagacc gataaaccta aacagcccat gcctaaatta
     2461 ggtgggggga aaaatcgcaa actgacccgt tatgagttag atgctcaagc ccgtgaggaa
     2521 aaacgtaagc gtaaacataa aggcttgccg acaggctcac gcaatgctga tccggcagag
     2581 cagaaaaaag cagtggtgaa agaggtgaaa gatccgcgta tcggtagccg taaaaaagtg
     2641 ccgttaatgg tggaatttgt gaaccagccg gaaaaagggc ggacgattaa ggctgtgccg
     2701 gttgagccaa tcaaaccaac gctttcaccg gaacaagagc tggagcagtt agaaaataac
     2761 gaatgtttaa atcagttgtt agatgatttg gaggcgggca aaaccttatc cgcagaagat
     2821 cagaaattta tgaatgaatg tttagatcgc attgatgaat taatgactga gcttggcatc
     2881 gaatatgaag atgaagaggg cgataatggc gatgcgttat tacgccaatt tgaaacgatg
     2941 gatattaata aattccgcta ggtagccgat tatgatgcta agaatattcc tgatggtgct
     3001 tgccgctttg attttaattt cgctgggcgg gtatgcactg cacttaatgc tgaaagtgcg
     3061 agctcagaaa aagcacgaac aagcactgat tgaacaggca aagcaagcac aaaaagatcg
     3121 ttatattcgg attttagaca gcattgaagt tattgctcgg gcaatgattt cagaacagtg
     3181 cgatttttcg gaaggcgttt tacgtttaaa accgctatta gatgttctcg gcagaaaatt
     3241 aagcgactat acggcgatgt gggcgttgta tggcgtggta gaaaatatgc cgattttaga
     3301 tgaacgcaaa aatttaaaac gtaacgaaag aatgaagttg gatttagagc gggaagcaaa
     3361 agaagcggag cttgaatcag acatcaaaaa tgagtgttac caattattaa aagatattga
     3421 agaaatgaga aaggcaatct aatgtcagaa attatttggg atttagccct tattcaaaaa
     3481 tataaccatt cagggcctcg ttatacctct tacccaacag cgttggagtt taacgaaaat
     3541 tacaccaatg aagattttat tcgtgctgca gctcgttacc ctgagcgtcc gctttcgctt
     3601 tatgtgcata ttccgttttg ccataaactg tgctatttct gtggctgtaa taaagtgatt
     3661 actcgtcatc gccataaagt tgaaatttat ttagattatt tagagcgtga aattaaaact
     3721 cgcgcacctc tgtttcaaaa tcgtttagtg acccaaatac actggggtgg cggtacgccg
     3781 acttatttag acgaagatca atcggcacgt ttaatgcaaa tgctacgagc caattttgat
     3841 gtgagcgatg atgcggaaat cagcattgaa atggatccgc gtgaaatcga attaagtatg
     3901 ttggatcacc tgcgtgctat cggttttaac cgtctgagta tgggtattca ggatttcgat
     3961 aaagaagtgc aacgtttggt gaatcgtgag caagatgaag agtttatttt tgccttgatg
     4021 aaacgggcaa aagaacttgg ttttgtttca actaatgtgg atttgattta cggcttgcca
     4081 aaacagaatg tggaaagctt tatgtacacc ttaaaacgtg tggtagagct aaaccctgat
     4141 cgtatgagcg tatttaacta tgcccacttg ccaagccgtt ttgctgcaca agtgaaaatt
     4201 aaagaagagt tgttgccggc tccggaaacc aaattgacga ttttgcaaaa ttccatcgaa
     4261 tttttaggca aaaacggtta taagtttatc ggtatggatc actttgctaa acctgatgat
     4321 gagttagcta ttgcacaaga aaaaggcatt ttacaccgta acttccaagg ctataccact
     4381 caagaagagt gtgatttatt gggaatgggc gtatcggcaa tcagcttact cggcgatact
     4441 tacgcccaaa accgcaaaga attacaacaa tactatgctg atgttgaaac caacggtatt
     4501 gcgttgcata aaggcattgc gttaacccaa gatgattgca ttcgccgtga tgtgataaaa
     4561 gccttgattt gtaatttcaa attagatttt gccaccattg aaaagcaata tggtattgat
     4621 tttaaacgtt attttgccga agatttagct ttcttagcgc cgttggcgga agatgaatta
     4681 ttaacgatga atgacgacag cattgtggtt tccccacgag ggcgtttatt gatccgtaat
     4741 atttgcttat gctttgatgt ctattcaaga caattagcga gaagacagca gttttcccgt
     4801 attatttaat gagcaagcgg tcgattttgg taaaaatttt gcaaaaacag accgcttgtt
     4861 cccggcttat aaaggaaaaa tgatgaaaca gcgttatagc ttactttctc ttgctgtgat
     4921 ggcagcttgt tatagcaaca gtgccgcagc tgatttaaag caacaatgtt tacttggcgt
     4981 gccgcatttt cagggcgaag tggtagaggg cgatcaactt agaatgcctg ttaccattga
     5041 ggctgacagt gcggtcatta accagcctcg tgatgccacc tacaccggtg atgtaacgat
     5101 caaacaaggt aaccgttcga tttgggcgga tcaggtgcgg gttgagcaag atggcgaaaa
     5161 tgcccgaatg gcgtatttgc agggtaattt taactaccaa gataatttga ttcaggcaac
     5221 cggttcagat gcgaccatca atctgctttc caaagatgcg aatttagcta atgctaatta
     5281 ccaattaatt ggcagacaag ggcgtggcac ggcagaatcc ggtgaattcg gcaacagcaa
     5341 acacacgctg aaaaatgcca gtttcacttc gtgcttaccg aatgataatt cgtggcaaat
     5401 tgaagcgaat gaaatgattc agcacgttga tgaagaatat gcggaaatgt ggcacgcccg
     5461 ttttaaagtg ctgggaatgc cggtatttta ttcgccttac ttacaatttc cgattggcga
     5521 ccgccgccgt agtgggttat taattccaag ttttgagcgt tcaagcaaaa acggctggac
     5581 atattcgcaa ccgttttatt ggaatatcgc accgaatatg gactcgacca tcactccaac
     5641 ttactattca cgccgtggtt ggcaaatcag cccggaattt cgttatttaa cgaaaatcgg
     5701 gcaaggctta gtggcaaccg aatatatggc gaaagatcgt ttaagcgagt accaaccggg
     5761 aaatgatgat cgtaaacgct atttattcca ctggcgtcac gcaatgagtt ttttaaccga
     5821 ttggcgtttc tcggtcgatt acaccaaagt gagcgacaga cgttatttct ctgattttga
     5881 ttcggattat ggtagcagta ctgatggcta tgcgacgcag aattttaaat taggctacta
     5941 tcagccgaat tataatatct caatttcagg taaaaaattc caaaccttcg atgagttgga
     6001 tatcgggcct tatcgcgttc tgccacaaat tgattttaac tattataaaa acgatctaat
     6061 taaaggcgga gatttcaaat tctttgccca agcagcccgt tttgaaaatg atagtaaatt
     6121 aatgccaaaa gcgtggcgtt tccacgctga gccaacactg aatttcccat tagcgaaccg
     6181 ctatggtagc ttaaatttag aaaccaagct ctatgcaacc tactatcaac aaacgaaagg
     6241 tagtgagagt acggaagaaa ttaagaaaag tgtaagtcgt gtactgccac agattaagct
     6301 cgattttaaa accgtgttgg aatccgataa acagcttttc tctggctata ctcaaacgct
     6361 tgagcctcgg gtgcaatata tttatcgccc atataaggat caaagcgata ttggctcgaa
     6421 agcacatcga agtgtgagct taggctatga ctctgcatta ttgcaaaacg actatttctc
     6481 actgtttaat gacagacgtt atagcggttt agatcgtatt tcgtcagcaa atttagtcac
     6541 cgcaggtggc acaacccgtt tctttaaaga ggcaaccggt gaagaggtgt ttaatttcag
     6601 cttaggacaa acttattata taagcccgtc taaaattgat gatacctcag ataacagcac
     6661 taaaggtcat acgacttcat gggcagcgga atctaactgg aaattccata agaattggaa
     6721 ttggcatggt agctatcaat atgatactcg tttaaaccaa acggcgttag cgaatatgtc
     6781 attgcaatac aaaccacagt cagacaaatt gattcagctt aattaccgct atgcaagtaa
     6841 agattacatc aatcaaaact tgaacacgaa taagtatggg caatccatta aacaagtggg
     6901 cggtgtgcta ggttgggaat taaccgataa agtgtcggta atgaccagtt attaccacga
     6961 ccttgcattg aaaaaaccgg tggaagggca aatttcgctt aactacaaca cttgctgttg
     7021 ggcggcaaat gtgtatgtgg ctcgtcgctt agtttcaacg ccggtaggtt catctgatac
     7081 gatcaatgat ttctactatg acaataaatt cggcattaac tttgagctac gctttggcac
     7141 aaactacagc aatggtgtaa cccgtatgct aaaacgaggt attattcctt acaccgagcc
     7201 gtatagcatt aattaacaaa gtaaaaacaa ataagtaaaa atacaaatcg gggcgaaaaa
     7261 tatttgcccc gattttttta tatttggctg ataagcggtt aaattctgtt ggaattttgc
     7321 aaatcttccg ctaaattcaa ccgcttgcca tcgaaactta acctgtattt cgcatacctg
     7381 cggcaatacc tgtgatggtg atcatcaatg cttgctctag tacaggatca gcattttcac
     7441 cttgtttgcg aatcctatct aacaattcta cctgaagtag attgagcgga tcggtataaa
     7501 tattgcgtag tgcaatcgat tctgcgatcc aaggtaaatc ggccattaat tgtccatcgt
     7561 gagccagtgc aagtacggtt ttaagatcag cctgtagttg cgtacgcaac atattgccta
     7621 aacggtgtag ttttggctcg actaggcgtt ggtcgtaata ttccgccagc caaatatcag
     7681 ctttactaaa taccatttcc agcattccga tacgggtcga gaaaaacggc cattcgttac
     7741 acatttcttt tagtaaggtt tcattacctt catcaatcaa ctgttgcaat gcttgccctg
     7801 cacctaacca agcaggtagc attaagcggt tttgcatcca agcgaaaatc caaggaattg
     7861 cacgcaaact ctccactccg ccttttggat tacgttttgc agggcgtgag ccaagcggca
     7921 gacgggaaag ttcttgctct ggtgtagcag agcggaaata cggtacgaag tctagctcgc
     7981 cacgcaccat atcacggtaa atttggcaag aaatatcgga ggcttttgct agcacatctc
     8041 gccattgctg ctttggctcc ggtggtggga aaatattcgc ttctaaaatc gcactggcat
     8101 agagttctaa actttcaact gccacggcag gtaagcctaa tttaaagcgg atcatttctc
     8161 cttgttcggt cactcgtaag ccatttttga gtgagcgagg tggctgagaa agtaaggctg
     8221 cgtgagccgg tgcgccacca cgcccgatag taccaccacg accgtggaat aaggttaatt
     8281 caatattata tttttcacat aaattaacca gagcttcttg cgcccgatat tgcgcccagc
     8341 cggcagcaag cattccggca tctttggcgg aatcagagta gccgatcata atcatttggt
     8401 aattgttgat gacgccacga taccagccga tattaaataa atcggtcatc actttttcac
     8461 tatgatctaa atcgcctagc gtttcaaata atggggcaac cggaatagta aatttgcacc
     8521 ccgcctcttt gagtaaaagg tgaaccgaga gtacatcaga ggcctctctt gccattgaaa
     8581 tgacataggc tgaaatgaca ccttcaggtt gctcggcaac aattttacaa gtgtctaaca
     8641 cttctttagt ttcagggctt ggagtccagt tggttggaat caatgggcgg cgagaactga
     8701 gttcacgcac taagaatgcc tgtttatcat cttccgtcca gtgagcataa tcgcctaagc
     8761 cgatatagcg ggtaatttct gcaatcgcca tttcgtggcg ggtactttct tggcgaatat
     8821 ctaagcgtga taaacctaaa ccaaaacagt ttatacgacg taagcaatct agtaatgcac
     8881 catttgcaat aattcgcata ccacaggctt gtaatgactc atagcaatca aaaagcggtt
     8941 cccacaattg ctgatctgaa gttaaaatgt cactttcatc aatagttgaa attttacctt
     9001 ccaataattc cgcatagtaa atttcggtat taattaattt ctggcgtaat acttttagta
     9061 atacgcgata tggctctaaa tggttgccat atttagcacg aaatgcaggg gtacactgtg
     9121 taatcgataa ttcttcagca agatttttaa tatcttgtaa gaacaattcc gtggctttcc
     9181 aacggttcat tcttaataca cggcgagttg tttctgccgt gacgaacggg ttaccgtcac
     9241 ggtctccgcc catccaagaa gaaaaacgga caggggctaa atttaccgga tattgcacac
     9301 caaagtgttt ttctaaatag aagttaagct gacggcaaaa ttccggcacg gctttccata
     9361 aactattttc aatgactgcc ataccgcctt tggcttcatc aacaggggtt gggcgttggg
     9421 ttctgatttc attagtatgc caagcaaggg caatcagttg cattaaacgg cgcttgattt
     9481 tatagctttc tgcctcagtt aaatcatcat gttccaacaa attcaaacat ttattgattt
     9541 caacgtgttt atgccccagc gaacggcggg ttacttccgt tgggtgagct gttagcacta
     9601 aatcaatcat taggctttcc acggttttaa tcactttttc aacggggata ttttgtgatt
     9661 ttagacgaag gaacagagag tctaatgagc gactaccaag tgattcatca atatgatggc
     9721 gagaaacagt ttgatgttgt tcagcaatat ttgttagatt tagaaaatgg ctaaatgcac
     9781 gtgcaacggg taagacatca tcgttagaaa tattggctaa tttatctaat agctgttcac
     9841 gggcgttttc atcgccggca cgagaattgc gagataacac acgaatgctt tcgatgagtt
     9901 ctagaatgta atttccttgc gcatcacgaa tcgtttctcc caaaaattca cctaacatat
     9961 ggatattatg ctgaattgtt gaatattgc
//
LOCUS       DANLZD010000098         9875 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.098, whole genome shotgun sequence.
ACCESSION   DANLZD010000098 DANLZD010000000
VERSION     DANLZD010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9875
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.098"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(227..721)
                     /locus_tag="PXE26_001783"
     CDS             complement(227..721)
                     /locus_tag="PXE26_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5594347.1"
                     /translation="MLSGLKIESFSKEFKRDCFDSESELLNQYLKTQVSQDIKRRITS
                     CFLAVNSEQTVVGYYTLASTSLSLSDLPITLQRKLPRYPTVPAVLLGRLAVDKRVKGL
                     GLGQALLGNALKRVLRADIAAYALIVEAKDESAVNFYRKFGFIDFENEARKLFFPLDR
                     VRLS"
     gene            complement(721..993)
                     /locus_tag="PXE26_001784"
     CDS             complement(721..993)
                     /locus_tag="PXE26_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HDL5594348.1"
                     /translation="MATATARFEARMSQEVHMLLKRAASLEGRSLSDFVVGAALSAAR
                     KTVEQNDIIRLSVNDQELFAKALIDPPEPNLAMQKALALSSQILGE"
     gene            complement(1152..1580)
                     /locus_tag="PXE26_001785"
     CDS             complement(1152..1580)
                     /locus_tag="PXE26_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594349.1"
                     /translation="MRKLLVITALTLCTTPVFAADKNVIFSCTSTEGKPLTVKRVGND
                     YEYSYDKTTFKNPIKKAVTNDGSIIARGSGFTTYALELENDGLKYLVGFVQPNGNAKE
                     FIEPGATISQSKEQPSIGSVDCDTRKKSHYKFDVHLMNTL"
     gene            complement(1601..3607)
                     /locus_tag="PXE26_001786"
     CDS             complement(1601..3607)
                     /locus_tag="PXE26_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL5594350.1"
                     /translation="MKSQFKFKKTHLLVITVLFSSTSSISFADSITDKLEFSKSDSII
                     SDRVFYQIGGGTGYMAPPSRGNTKVVDLGIGWKANLTCGNFDIKTTIKNDLNGLKDGF
                     KDLMGNVIDSAKGAVASMPAMILQRANPQLYDLLTNGMYQGKLDFNRLKTSCEEMSKV
                     LADHTLGGKWGQAADLESYKQITSTQPDAKQAQKDLEDKKGKDGRVWVGGQRKGGQNQ
                     DPINVVGDVAKGGFNLLNKRNVLDSSPVSNCEGNLCQTWDTPQAAADFLTKIIGEQSI
                     STCKEDCGTKTSSKAGVGLSPEIEEEHIRTIVKLENVLNMDVPKSELLAELSSSSVPV
                     TRGLIESLRDDPDVELLSQRLSAEIATSKVMEKMLLARRAILAGMREPNVAQNADAQV
                     ELERVLNIIDREISQVKLEMDMQKMITGNTASVILQSKSEREALAGAHSLSQDSLDKR
                     VQGLENGNVALTDLETGSNINLSRRNIALSIPNIPNVAALIPTLPNRGGSGVGGNFPS
                     LAQISGSTMDQATGLLRNFEGFISKAQWDVNAHRVGYGSDTITRADGTVVKVTKDTVI
                     TKEDAERDLARRTAIFANNVRQELGDSHWNALPANAQAVLVSYAYNYGSLAKTKSVLD
                     AARRSAQTGDMTALATAVRNRQVDNNGINARRRNQEADYILGKN"
     gene            complement(3622..4563)
                     /locus_tag="PXE26_001787"
     CDS             complement(3622..4563)
                     /locus_tag="PXE26_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03756 family integrating conjugative element
                     protein"
                     /protein_id="HDL5594351.1"
                     /translation="MKRAFFSVLLSVSLAVPTTLYPQQVKASLNTASIAASSASTSCL
                     DYKVVGTCFWLFCTYFGCKVRTSTKIKHYLPEMVVSSYNQDGQTPWTELQSLNPGVKG
                     GEYRSPQRQYSQLTFKNADAFGHPQGAIGQLLGSTGYYCKSQTTPFIPYFLSGLDFFA
                     WRENMPEMFYPEALIPGMREVGRVGDSWGNIYPRSGWVTQAHDYKASATIVQRVADIV
                     TRTAQPHIYFPAAKKGGVGEWPPGPVEEGQARTHKWQMLYPQMSNTCSVFPNGGQTDT
                     YSSQISNQGDYAWALWRPYSCCKRRGQTFLYSIDWSH"
     gene            complement(4560..5003)
                     /locus_tag="PXE26_001788"
     CDS             complement(4560..5003)
                     /locus_tag="PXE26_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03757 family integrating conjugative element
                     protein"
                     /protein_id="HDL5594352.1"
                     /translation="MKASRFLGYFSIVTVVFSVVAQAQPNIIVYTTKMYPIQNSQLAS
                     QVYYLDQVENFEEEISRNLSKSPEIAEREIRAFFNSADWKAQEEQLKDAYQGVISGWQ
                     NGIKKVPAVFFNNLQSSPSVIYGMTDIQKALDEWHKWVQQHGESK"
     gene            5378..5731
                     /locus_tag="PXE26_001789"
     CDS             5378..5731
                     /locus_tag="PXE26_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594353.1"
                     /translation="MSQQTAGWDVIPFESSKTAKPSLFWKLGNKLGNIFVSAKHKAKS
                     KYVEVTKGINQRIAEEDEMRALELQMCLDEQAAEYEQEISRIKRKMFFRALFVAIIAF
                     LCGMATVFGTQLSLI"
     gene            5803..6048
                     /locus_tag="PXE26_001790"
     CDS             5803..6048
                     /locus_tag="PXE26_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5594354.1"
                     /translation="MSVHIKLSCVGDILPIKLNEWTPEHRALHHEISHKALEAWQNRD
                     KGTQSVRFMQQMPARQGLHFRFLSVSEQDGKLIVSRS"
     gene            6057..6299
                     /locus_tag="PXE26_001791"
     CDS             6057..6299
                     /locus_tag="PXE26_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594355.1"
                     /translation="MFGKLFYKMNPKVLAKIGEDFRKAGYLMGAGFVGMVISNDQIST
                     SEGFVLFLWGLYIWIIGHIALHHSEKILNSKQGEPK"
     gene            6563..7405
                     /locus_tag="PXE26_001792"
     CDS             6563..7405
                     /locus_tag="PXE26_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594356.1"
                     /translation="MSDSVLNTYFKHALVKAGFPDTLDMEYSLSHCQGDGVAFYGRLG
                     TDDLIQLFNHLNPQKRKQKMFANLLTHIESWETHDDIGFEIIRNRFGYRYSHWNTMEL
                     YAKTADQLVFFNDSDARRNWYFPTSKVDKYKALWDGFIEDLEQYIKDISREMESVGYQ
                     IIEASPYQTETVFKFNTEKYLVELQRKPSEFYSELVDWAFGDMCDFEAAIEQICQGQL
                     CYADFEATVTDKKSEIQLGLARLSGISYSPNDRSFSGYRQELIGEAIASARHNAARFA
                     YLHA"
     gene            7520..7933
                     /locus_tag="PXE26_001793"
     CDS             7520..7933
                     /locus_tag="PXE26_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5594357.1"
                     /translation="MKNEHNLEQLKYIWDNRNLENKVYQYLFHICIEPMKKGDWNRYT
                     IWLNFHGNLINVSDVVYRVVESQKLKDDIKIWYDKQYYCRPTKVETTGFISIFLHLFY
                     EGIARILLEQGMITETEAAEKSYNFRAANCFQRLL"
     gene            7947..8102
                     /locus_tag="PXE26_001794"
     CDS             7947..8102
                     /locus_tag="PXE26_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594358.1"
                     /translation="MEPRTVKVIYDDGDYFFTLINADEQTIRNYYAIGSSIGFDNTRK
                     IVAVEIL"
     gene            8182..9165
                     /locus_tag="PXE26_001795"
     CDS             8182..9165
                     /locus_tag="PXE26_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HDL5594359.1"
                     /translation="MNPQSNTQPKFDLYQEVTDKIIAALEQGTAPWLKPWDSVIPYGG
                     MPCNAISGRLYSGINVLLLWLSAAEHGYIQRKWITAKAAIEAGGHVRKGEKATLAVSY
                     RPYDREKTDDDGNLVLDDDGNPVIEHLASIKKHCLFNIEQCEKLPQDWYETVETPEQL
                     TDENQYAIFEEIRLMLKGMDLQVMVKPSNQAYYHPRNDHIVMPEMKQFHSPQKFHSVL
                     LHEMTHATGHQSRLARDGIVSGKARFGNKVYAFEELVAEMGCAFLCSHLGFADVPQNA
                     SYIESWIKVLREDKRAIFRASGKAREACQYMLDALNIAQLADKYEVFEEAA"
     gene            9255..9497
                     /locus_tag="PXE26_001796"
     CDS             9255..9497
                     /locus_tag="PXE26_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594360.1"
                     /translation="MLNLNLFKRPIEISTLESWSKFCDDVGKVAFVAVPAMLYSNYEF
                     WIKISSIIGLFIATYFCLVIGRNIRQFIEKEKSKWD"
BASE COUNT         2886 a         1987 c         1920 g         3082 t
ORIGIN      
        1 gtgttattgc gttattctca tgcataaaat cagctaacag aacaatacca attaaggata
       61 taactgctcc gaatacagca tataaccata gccttagctg ataagttatt aggagaaata
      121 atataatata tgtatatttg agaaaagtgg gatgattcca ttctttaaaa gctcgaattt
      181 tcctgcctaa ccaataacca aaattatttt tcataatcac tctccattaa gataatctca
      241 ccctatctag tggaaaaaat aatttcctag cctcattttc aaagtcaata aatccaaatt
      301 tacgataaaa attgaccgca ctttcatctt ttgcctcaac aattaatgcg taagctgcta
      361 tatctgcacg aagtaccctt ttaagtgcat tacctaatag agcttgccct aaccctaatc
      421 cctttacacg cttatctact gctaatcgac caagtaggac ggcaggtacc gtaggatatc
      481 ttggtaattt cctctgtaat gtaattggta aatcagataa tgaaagactt gttgaagcca
      541 gtgtgtaata tcctactact gtctgttcag aattaacagc taaaaaacaa gaagtaatac
      601 gtcttttaat atcttgtgaa acctgagttt tgagatattg atttaataat tcagattcac
      661 tatcaaaaca atctcgttta aattccttgc taaatgactc tattttcaat cccgaaagca
      721 ttattccccc agaatctgtg agcttaatgc caaggctttt tgcattgcca aattaggttc
      781 aggaggatca atcaatgctt tagcaaaaag ttcttggtca ttcacagata atcgaataat
      841 atcattttgc tcaactgttt ttcttgctgc agatagtgca gctccaacaa caaaatcact
      901 aagactacgc ccttcaagag aagcggctcg ttttaacagc atatgaactt cttggctcat
      961 tctagcttca aatcgtgcgg ttgcagttgc catatatttt ctccttgaat tatttagttt
     1021 taattgtacg tatttatacc gtacaaatca agcatgacaa taaaaaaatc ccttagattt
     1081 tcaaacctaa gggatttacc taccgatctt tgtgtttttt aacgtgggct ggccctagtg
     1141 ccatacaggc attataaagt attcatcaaa tgaacatcaa acttataatg gcttttttta
     1201 cgagtatcac aatcaacaga gccgatactt ggttgttctt tactttggct aatcgttgct
     1261 cccggctcaa taaattcttt tgcattgcca tttggctgaa caaagccgac caaatacttc
     1321 aatccatcat tttccagctc taatgcatac gttgtaaaac ctgaacctct ggcgataatt
     1381 gagccgtcat tagtgactgc ctttttaatc ggatttttga aggttgtttt gtcatacgaa
     1441 tattcgtaat catttcctac ccgtttaaca gtaagcggtt ttccctccgt gctggtacag
     1501 gaaaatatta cgtttttatc tgctgcaaat actggggtcg tgcagagtgt aagagcagta
     1561 attactaata atttacgcat aaatgtaact ccttataagg ttaattttta ccaagaatat
     1621 aatcagcttc ctgattccgg cggcgtgcat tgataccgtt attatcaacc tggcgatttc
     1681 tgacagcagt tgccaaagca gtcatatcac cagtttgagc tgatcgtcta gctgcgtcaa
     1741 gcacactttt tgttttcgct agtgagccgt aattatatgc ataagacacc aaaacagcct
     1801 gagcgttcgc cggtaatgca ttccaatgtg aatcacctaa ctcttgtctc acattgttcg
     1861 caaagatagc agttctgcga gctaaatcac gttcagcatc ttctttggta atcacagtat
     1921 ccttggtcac tttaactacg gtaccgtctg cccgtgtaat cgtatcggaa ccatatccta
     1981 cacgatgggc attcacatcc cattgagcct tggagataaa gccttcaaaa ttacgcagta
     2041 accctgttgc ctgatccatc gttgaaccgc tgatttgtgc aagtgatggg aaatttccgc
     2101 ctacacctga accacctcta tttggtagag tcgggatgag agctgctaca ttcggaatat
     2161 ttgggatact caatgcaata tttctacgag agaggttaat attagagcct gtctctaaat
     2221 cagttaatgc aacattaccg ttttcaagtc cttgaacacg cttatccaga ctatcttggg
     2281 ataaactatg agcaccagca agagcttccc gttcggattt actttgcaga atcaccgaag
     2341 ccgtattgcc ggtgatcatt ttttgcatat ccatttccag ttttacttgg gaaatttcac
     2401 ggtcaataat attgagtact ctttccagtt ctacttgagc atccgcattt tgagcaacat
     2461 tcggctctcg cataccagct aggattgctc ggcgagccag tagcattttt tccattactt
     2521 tactggtcgc aatttcagcg gataaacgtt ggctgagaag ttcaacatct ggatcatcac
     2581 ggaggctttc aatcaagcca cgagtgacag gtacactact tgagcttaat tcagctaata
     2641 gctcggattt cggcacatcc atattcagta cattttctaa tttaacaatt gtacgaatat
     2701 gttcttcttc aatttccgga cttaaaccaa caccggcttt cgaactggtt ttagtaccac
     2761 aatcctcctt acaggttgaa attgattgct caccaataat cttagttaag aagtcggcag
     2821 cagcttgagg tgtatcccaa gtctgacaaa gattaccttc acaatttgaa accgggctgc
     2881 tatctaagac attccgctta ttgagtaaat taaatccgcc tttcgctaca tcaccaacga
     2941 cattaattgg atcttggttt tgcccacctt tacgttgccc accaacccaa actctcccat
     3001 ctttcccttt tttatcttct aggtcttttt gggcttgctt cgcatcaggt tgtgtcgagg
     3061 taatttgctt atagctctct aaatctgctg cttgccccca ttttcctcct agtgtgtgat
     3121 ctgccagaac tttagacatt tcctcacagg aagtttttag acggttgaaa tccagcttac
     3181 cttggtacat accatttgtc agcaaatcgt agagttgagg gttggcccgt tgcaatatca
     3241 ttgcaggcat actggcaacc gcacctttag ctgaatcaat gacattcccc attaaatctt
     3301 taaagccatc tttaaggccg tttaaatcat ttttaatagt tgttttaatg tcaaaattgc
     3361 cacaggttaa attcgctttc caaccgatgc ctaaatcaac gactttggta ttaccacgac
     3421 taggtggagc catataacct gttcctccgc cgatttggta aaagacacga tctgaaataa
     3481 tcgaatccga cttactaaat tccagtttat cagtgattga gtcagcaaaa gagatagagg
     3541 aagtactgga aaaaagtact gttattacta atagatgtgt tttcttgaat ttaaattgtg
     3601 atttcattgc aagacctcgt tttagtgtga ccaatcaata ctgtaaagga atgtttgccc
     3661 tcggcgttta caacaactat aaggtcgcca tagtgcccaa gcataatcac cttgatttga
     3721 aatctgagag gaataggtgt ctgtttgccc cccatttgga aaaacagagc aggtatttga
     3781 catttgagga taaagcattt gccatttatg tgttctggct tgtccttctt cgacaggtcc
     3841 tggtggccat tctccaacac cacctttttt cgctgccggg aaataaatat gtggttgagc
     3901 agttcgggtc acgatgtctg caactctctg cacaatggtt gcagaggctt tataatcgtg
     3961 agcttgtgtt acccaaccgg aacgtgggta aatatttccc cagctatcgc ctacacggcc
     4021 aacttcccgc attcccggaa tcagagcttc cggataaaac atttccggca tattttcacg
     4081 ccaagcaaag aaatctaatc cacttagaaa atagggtata aatggtgtgg tttgactttt
     4141 acaatagtag cctgtacttc ctaataactg accaattgct ccttggggat gcccgaaagc
     4201 atctgcattt ttgaaggtta gttgagagta ttgacgttgc ggagaacgat attctccgcc
     4261 ttttacgcca ggattgagag attgtaattc tgtccacgga gtttgcccat cctggttata
     4321 agatgaaacg accatttccg gtaaataatg cttaattttg gttgatgtac gaaccttgca
     4381 tccaaagtag gtgcaaaata accagaagca cgttccgacg actttatagt ctaaacagct
     4441 tgttgaggca cttgatgcag caatcgacgc cgtattcaat gatgctttta cctgttgagg
     4501 atataaggtt gttggtactg ctaaacttac agagagaagt accgaaaaaa acgctctttt
     4561 cattttgatt caccgtgttg ttgaacccat ttatgccatt catctagtgc tttttgtata
     4621 tcagtcatac cataaatcac gctcggagag gattgcagat tattaaaaaa caccgcaggc
     4681 acttttttaa ttccattttg ccatccactg atcacccctt gataagcatc ttttaattgc
     4741 tcttcttggg ctttccaatc tgctgaatta aagaatgctc gtatttctcg ttcggcaatc
     4801 tcgggggatt tactgagatt tcgactgatt tcctcttcaa aattctctac ttgatcaaga
     4861 taataaactt gggaggcaag ttgtgaattt tgaatggggt acatctttgt tgtatagaca
     4921 atgatattcg gctgtgcttg tgccactaca gaaaacacta ctgttactat gctgaaatat
     4981 cctagaaatc tacttgcttt catcactctc tttccgaata aataagcaga aaattagcga
     5041 gatttttaca tagaggatag gaaaaactct tttcaaaaaa gagatatttt tttgagcaaa
     5101 aaatggttga ttttataaat ggatttcgta tgatatggaa tattaagatg ctgtggaaac
     5161 agcccttaaa agtcgcataa ctcttgagaa gcggcggcta tccatcgagg tagttgagtt
     5221 atttacccaa aatgtctccc agcattctga aagggaacgc tgcaaatttg caggaatgcc
     5281 acctaaacac ctaccttccg agggatattt caattccctt ggaattgcga tctcctgagg
     5341 aattttattt atttaacttt ttataggaga actcgctatg agtcaacaaa ccgcaggatg
     5401 ggatgtgatc ccatttgaat cgtcaaaaac cgcaaaacct tctctttttt ggaaacttgg
     5461 caataagctc ggtaatattt tcgtttcggc gaaacataaa gctaaaagca aatatgtcga
     5521 ggtaaccaaa ggcatcaatc aacgaattgc tgaagaagat gaaatgcgag ccttagaatt
     5581 gcaaatgtgc ttagatgagc aagcagctga atatgagcag gaaatttctc gcattaagcg
     5641 taagatgttt ttcagggctt tattcgttgc gattattgcc tttttatgtg gtatggctac
     5701 cgtttttggt actcagctct ctttaatcta atttaactca cccatcgggg aaatgctatt
     5761 tcccttgtgg taatacattt ccccttaatt ttggagaaat gtatgtcagt tcatatcaaa
     5821 ctctcctgtg ttggagatat tttgccaatc aaactcaatg aatggacacc ggaacatcga
     5881 gccttacatc acgaaattag ccataaagct ctcgaagcct ggcaaaatcg agataaaggc
     5941 actcaaagcg tgcgatttat gcaacaaatg ccagcccgac aaggactgca tttccgcttt
     6001 ctgagtgtat cggagcaaga cggcaagctc attgtcagtc gttcatagtt ggttcaatgt
     6061 ttggtaagct tttttacaaa atgaatccca aagtactagc taaaatcgga gaagatttta
     6121 gaaaagctgg ttatcttatg ggagctggtt ttgtcggaat ggtaatttcc aatgatcaga
     6181 tttccacatc ggaaggattt gttctttttt tgtggggatt gtatatttgg attatcgggc
     6241 atatcgcact acatcattct gagaaaatac ttaattcaaa gcaaggagaa ccgaaatgag
     6301 tccgtacttt ttaggtgctg ctattggaac agcgttattg gcaacaattt ttattgttct
     6361 agtaacttgg gcaaatcgag atattttgtt tacaaaatca gataagccac agtctaaata
     6421 gcaaaactcc attctaaccc ataggggaac aagttccccg aggagcttgt tctccgtttt
     6481 accttccttt taccctatcg ggaaatactt tcccgaattg ggcttaagtg tttcccatta
     6541 ttttttattt tggagaaaca ttatgtcaga ttcagtatta aacacttatt ttaaacacgc
     6601 tcttgtcaaa gctggttttc cggatacctt agatatggag tattcactca gccattgtca
     6661 aggagatgga gtcgcatttt atggtcggct tggtacagat gatctaatcc agcttttcaa
     6721 tcatctcaat ccacagaaac gtaaacagaa aatgtttgct aatttgctaa cgcacattga
     6781 atcttgggaa acccacgatg atattggttt tgaaattata cgaaatcgct ttgggtatcg
     6841 ttactcgcat tggaatacga tggagcttta tgctaaaact gcagatcagt tagtgttttt
     6901 caatgatagt gatgctcgaa gaaactggta ttttcctact tcaaaagtgg ataaatacaa
     6961 agcattgtgg gacggattta tcgaagattt ggagcagtac atcaaagata tttcccgtga
     7021 aatggaatcg gtcggttatc aaattattga agcctcgccg tatcaaacgg aaaccgtttt
     7081 caaatttaat acggaaaaat atctagtaga actgcaacgt aaaccttctg agttttattc
     7141 agagcttgtt gattgggcat ttggtgatat gtgtgatttt gaagcagcta tagagcagat
     7201 ttgtcaaggg caactctgtt atgctgattt tgaagcaact gttaccgata agaaaagtga
     7261 aattcagtta ggtcttgctc gcttgagtgg aataagttac tcgccgaatg accgttcgtt
     7321 tagtggttat cgacaagagc ttattggtga ggcgattgcc tctgctcgcc ataatgcagc
     7381 acgttttgcc tacttgcacg cctaatttgc agatttttac tttaatttga ccgcttgtag
     7441 tggttaattt tcaccccgtg gggaaatatt ttccctattg ggcaaaatgt ttctccactt
     7501 tttaatttgg agaaatgtta tgaaaaatga acacaattta gagcaactta aatatatttg
     7561 ggataaccgc aaccttgaaa ataaagtcta tcaatatctg tttcacatct gcattgagcc
     7621 gatgaaaaaa ggagattgga atcgttatac gatttggctt aattttcacg gtaacttaat
     7681 caacgtgtca gacgttgtat atcgagttgt ggaatctcaa aagctcaaag atgacatcaa
     7741 aatttggtat gacaagcaat actattgccg tccaaccaaa gttgaaacaa caggttttat
     7801 ttccattttt ctgcacctgt tttatgaggg catagctcgt attttgctgg aacagggaat
     7861 gattactgaa actgaagcag ccgagaaaag ttacaacttc agagctgcaa attgttttca
     7921 acgtttgctt taatggaggt gagataatgg aacctcgcac tgttaaagtt atttacgatg
     7981 atggcgatta tttctttacc ctaatcaatg ccgatgaaca gactattcgt aattactacg
     8041 ctataggcag ttcaatcggt tttgataaca caaggaaaat tgtcgctgtt gaaattttat
     8101 aaactaccca tcggggaaac gacttcccca tagggcgata gtgtttcccc atttttctac
     8161 ccgaactttg gagaaacact tatgaaccct caatcaaaca cacagcctaa atttgattta
     8221 tatcaagaag tgaccgataa aatcatcgcc gctttagagc aaggaacggc tccttggctt
     8281 aaaccttggg atagcgttat tccttatggt ggtatgccgt gtaatgccat atccggaaga
     8341 ttgtattccg gaatcaatgt tttgttactt tggttgtctg ccgcagaaca cggctatatc
     8401 caacgcaagt ggatcactgc aaaagcagct attgaagccg gtggacacgt tcggaaaggt
     8461 gaaaaagcaa cccttgcggt cagctatcgc ccgtatgatc gagaaaaaac cgatgatgat
     8521 ggcaaccttg tcctcgatga cgatggtaac ccggtaatcg aacatctcgc ttcgattaaa
     8581 aagcactgcc tattcaatat tgaacagtgc gaaaaactgc cacaggactg gtatgaaacg
     8641 gttgaaaccc cagaacagct gactgacgaa aatcagtatg ctatttttga ggagattcgt
     8701 ttgatgttga aaggtatgga tttgcaagtg atggtaaaac caagcaatca agcttactac
     8761 cacccacgca atgaccatat cgtgatgccg gaaatgaagc agtttcattc accacaaaaa
     8821 ttccatagcg tgctgctaca tgaaatgact cacgcaacag ggcatcaatc tcgccttgct
     8881 cgtgatggta ttgtttccgg aaaagctcgc tttggcaata aagtttatgc ttttgaagaa
     8941 ttggtcgctg aaatgggctg tgcattcttg tgttctcacc taggctttgc tgacgtgcca
     9001 caaaatgcca gctacattga aagttggatc aaggtgttaa gagaggataa acgggcaatt
     9061 ttcagggctt cagggaaagc tcgggaagcc tgtcaatata tgctggatgc cttaaacatc
     9121 gcacagctgg ctgataaata cgaagtattt gaagaagccg cttaataaat ttgccgaaag
     9181 gcatttcccg tggggagata ctctcccttc ggggcattgt gtctcccttt ttattcactt
     9241 aacgagagga ctcaatgctc aatctaaact tatttaaacg acccattgaa atttcgacac
     9301 ttgaatcttg gtcaaaattc tgtgatgatg ttggtaaagt agcttttgtt gcagtacctg
     9361 ctatgctgta tagtaattac gagttttgga ttaagataag cagtataatt ggtctattta
     9421 tagctaccta tttctgttta gttatcggta gaaatatacg ccaatttatt gagaaggaga
     9481 aatcaaaatg ggattaatga tcggcatttg gattattgct tttattgcat ttgggttggc
     9541 catatggaca agccatattc taaaaaagca agatgaacgc cttaaacagc taaaaaatag
     9601 ctaactttca aaatacggca cattttgtgc cgtatttctt ttgtactggt ggcaaatata
     9661 agattactat catcagtata ttgtaatatc tcaactcaac agcattagtc aaaaatcctc
     9721 caacatattc agagagtttt tcctactgag ttctcttatt ttttggttca atactctccc
     9781 tttataaatt aaatttggtt cagataaaag ccgctcaatg gcaaaaggat aaaggagccc
     9841 ttacgggcaa gggtaatccc ctaaggggga ataag
//
LOCUS       DANLZD010000099         9841 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.099, whole genome shotgun sequence.
ACCESSION   DANLZD010000099 DANLZD010000000
VERSION     DANLZD010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9841)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9841)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9841
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.099"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            147..1853
                     /locus_tag="PXE26_001797"
     CDS             147..1853
                     /locus_tag="PXE26_001797"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HDL5594361.1"
                     /translation="MNTSSFNRTWAKVILSALMRYGVKHFCIAPGSRSTPLTLAAVQL
                     QQTQYAECHTHFDERGLGFYALGIAKATDSPVAIIVTSGTAVANLYPAVIEASLSHQK
                     LIILSADRPTELIGCGVNQAIHQQGIFANYPVASVNLPKANEAYHASWLVSTIEQACT
                     TQAQQGGVLHINVPFEEPLYEADINEILNTPWLRPIQGWLNNAQTKWIDQQAIQSEVS
                     MHENWDYWRTKRGVIVVGKLPPEQGTGLKTWAETMGWCLLSDVQSCIEASLPYADIWL
                     SNETVKQRLLQADIVIQFGTQIVSKRVNEFLKAFQGEYWVVEQSHDYHNPNAHHQTRF
                     IAKAHHFLRVHPPLRQKPWLLEPLALSQFCSTFIEQQVGGSLSEASLAHNIQDVLAIN
                     GNLFIGNSLFVRLVDALCKLPEGYPVYTNRGASGIDGLIATMAGIAKGSDRPTVGVVG
                     DISALHDLNSIALLTKINQPTILFVVNNSGGALFDMLPVDSKAKDQYYRLAHNFEFAQ
                     VATMFGLEYIRPFTWADLKTKLKHAYARKGVTIVEIKVNEHDGSNMYKSLLKQISQAE
                     IA"
     gene            1902..2741
                     /gene="menH"
                     /locus_tag="PXE26_001798"
     CDS             1902..2741
                     /gene="menH"
                     /locus_tag="PXE26_001798"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HDL5594362.1"
                     /translation="MLSYQWHAQQGTPVVFLHGLLGSQQDWQAVLQHLQNFPQIRPLT
                     IDLPFHGNSKHITCADFANLRQQLHATLESLIGSRPFYLVGYSLGGRAALDYVLNMEN
                     PNLQGVVLEGANIGLSTENDRQIRRQNDRHWANRFRQEPIEQVLEDWYKQPVFADLSD
                     TERECYIDSRKHNQGEQIAQMLEATSLAKQPDYTEKLKQTDKNIVFFIGEKDQKFRKM
                     ASSHQLPTQLIANAGHNAHRANAKNFVEKLGLLILHSDSDLRSQSVKHNGAALLHKSP
                     SGA"
     gene            complement(2790..3467)
                     /locus_tag="PXE26_001799"
                     /pseudo
     CDS             complement(2790..3467)
                     /locus_tag="PXE26_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251475.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            3553..4215
                     /locus_tag="PXE26_001800"
     CDS             3553..4215
                     /locus_tag="PXE26_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heteromeric transposase endonuclease subunit
                     TnsA"
                     /protein_id="HDL5594363.1"
                     /translation="MRKTHSFQQVRKIKPTWMSVSGHIPFRNGVSIPYESTLERDFLM
                     YFTYLPSVDEVVSQPTTLPFVKNGITYTYTPDFFLSFTDGRKPMLIEVKPKAKWQKHW
                     KEWKEKWKAAIRFCQENGYVFHVYDEDRIRHLALFNLNYVQRYKRIQHEQEDIDAILA
                     QVKLMGNTTIDYLLSRFFAGSLYRMKGLQIIYHLLATKQLHCNWFLPLNEFTEVWGNN
                     DE"
     gene            4205..6133
                     /locus_tag="PXE26_001801"
     CDS             4205..6133
                     /locus_tag="PXE26_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HDL5594364.1"
                     /translation="MMSNSGFTEKRYHHRLDRGRIILQKGNIYLNREDGEQYELVDYM
                     DEPSQLLVRNLNTRTTKVVSIHQLENFKMNERTDLSVDVTAISNEYWEKAQQKYEAIK
                     PLLGMDQHRPYAVKARAEDVGVNPRTLYRWLQAYNSIGSIAGLVDQKRGWQQGNSRLT
                     PEQDKLIVQVINEFYLHKQRPTTEQTIREIRRRCKIEKVESPSKETIRMRILHISEEE
                     RLRKRGQREKARNKFKPKPNSFPDADYPLSVVQIDHTPVDLIIVDSKYRKPIGRPFLT
                     VAIDIYSRMIVGYYLSLDAPSVTSVAMCIARGILPKERLLLDLGLQGSEWNAFGYPVK
                     VHVDNGPDFQALDLSKSCSAHGIHLEFRPMGRPEYGGHIERVIGTFMKEVHSLAGTTF
                     SNIKERDSYDSEKEAIMTLDEFEKWLVHYIVNVYHKRVHSALGISPEQKWKIGIFGDE
                     NEVGCGYPQLPVDEQTLLLDFLPSITRTIQHNGVTIDGLRYYDVALNMYISDSDESGK
                     SKEFLFRRDPRNISKIWFYDPKLKRYFPIPFANQAMPEMSIWEYREVRSRIANKGDKY
                     INEQQVLDGLTEMREMVAESAQRTKKARRQAERQKMHKASKPIIETKVETKAVVPVVV
                     TSNLLALDDESLSFGEVD"
     gene            6133..7020
                     /locus_tag="PXE26_001802"
     CDS             6133..7020
                     /locus_tag="PXE26_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TniB family NTP-binding protein"
                     /protein_id="HDL5594365.1"
                     /translation="MQYEHVHEKFRHLVTADNQERIAFLDEPRWLGYGVAKDIMDNLV
                     SLMNKPKRPRMLNLLIVGDSNNGKTTLIRRFFDLYGQAYIDSDSNAIYPILLAEAPPS
                     ANEKELYISLLERFYVPYKPTDTIAKLRYQTIHLFREFRVKMLVIDEFHSLLVGTPRL
                     QRQVMNAIKMLCNELQIPIVGVGTRDAIRVLHTDRQHASRFDVAELPIWKLDKEFQKL
                     LFQFQGILPLRESSNLQSPELATKIHTISGGNLGNVHRLLTACAVQAITSGTEKITLD
                     IIEKNSWVQPTNGYRKIIG"
     gene            6978..8084
                     /locus_tag="PXE26_001803"
     CDS             6978..8084
                     /locus_tag="PXE26_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TniQ family protein"
                     /protein_id="HDL5594366.1"
                     /translation="MGTTNKRLSQNNRIKKGVIHTPIYSNESISSWLIRASFDCGTDP
                     LTFTGFYWEKHRLWTLDLDRGLENIEPTIYDDVQALSGKIQLSEYSLFRRLYPINADE
                     TLAKGQVRWVIPRSARNRTHHIGQQYCPLCLDESPHLRNDWRLAWNFGCLKHNMMLAN
                     RCFCCGTLYQPHLLSAEKRHLNHCHQCGGKLEQGTMEMSLAEKLTLQGINQVLEKDSG
                     ICFGYKVSGKVWFDMLRYCINLLRRASDRPNHALAKFVVNLQIDVENICSPKTGLSFE
                     QLPLGERTNLLVNAYHILGMEADSIRSAIYLCGGTQKTFMFEKYPDFWQEFMALAPAG
                     PNRTRKRTKPQNESITAINRRWERLKRKLHLNNE"
     gene            8081..9505
                     /locus_tag="PXE26_001804"
     CDS             8081..9505
                     /locus_tag="PXE26_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594367.1"
                     /translation="MKINVIKPQEEPCSACGKISRIWRRYNGEGYCANCYAKWFPKKE
                     CSCCHQPKRIYLSSTVCWDCEKQTDCVRCGKAAGTFKIGKITRYGAVCNVCSRYFREE
                     RECFECGQLSRTMLRASESGHSELLCLKCFQKYRFATCKNCRRYRKVHDRDNQLCRKC
                     SEQRTSQCPKCKQDMPAGYGNICADCSRRTLLFNLIRMNVHLFRHKKVKRAYKKFIFW
                     YLAKCGVSVVLKKSDDHVLFFMRCDENWGNIPDYRELVTFFKPNGLRTHLTVLRWLLD
                     TNQVKVDESLKEEMAGLERIQSLFNKLSNSVPCIANYYTQLQHKYEAGKTSLKSVRLA
                     LQPAIDFISSESVSLLPTQVQLNSYLVAKTGQIAAITGFINHLNREYHCELEIDRSLI
                     QKMKEKQLKQQAKQRLAILYKQEKLSIKEQNELLSVVLLNLHNIWIKSPKKLSISEID
                     GIAYYVDNEKKYFIPKDIHIRLME"
     gene            9620..9826
                     /locus_tag="PXE26_001805"
     CDS             9620..9826
                     /locus_tag="PXE26_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA delta(2)-isopentenylpyrophosphate
                     transferase"
                     /protein_id="HDL5594368.1"
                     /translation="MTLKAQFREWLKKEQEHDEMIGFAHIPCILSKVDSKLAIVSGNA
                     YEKKYLRYWIKCFRFDRNISKYIK"
BASE COUNT         3041 a         1986 c         2122 g         2692 t
ORIGIN      
        1 taagtaaagt gttgctcaat agatagaaat tttcacgaag ttttacaaaa acattccaat
       61 tttctcctaa aaaacttccc acaataattt cactttttgc tacaatccta accatttatc
      121 gaatttatca atcagtagag aagaatatga ataccagttc ttttaatcgc acttgggcaa
      181 aagtgatttt aagtgcatta atgcgttatg gcgtaaaaca tttttgtatt gctccgggtt
      241 ctcgctcaac accgctcaca ttagcggcag tgcaacttca acaaacgcaa tatgcagagt
      301 gccacactca ttttgatgag cgtggtttag gtttttatgc gttagggatt gctaaagcaa
      361 ccgacagccc ggttgctatt attgtcactt ccggcacagc agtagcgaac ctttatcctg
      421 cggtgataga ggcaagcctg agccaccaaa aactgattat tctttctgcc gaccgcccaa
      481 ccgaattaat cggctgtggg gtaaaccaag ccattcatca gcaaggtatt tttgccaatt
      541 acccggttgc cagtgtcaat ctaccgaaag cgaacgaggc ttaccacgca agctggctgg
      601 tttcgaccat tgagcaagcc tgcactaccc aagcacaaca aggcggtgtg ttgcatatca
      661 atgtgccttt tgaagagccg ctttacgaag cagacattaa tgaaattcta aatacacctt
      721 ggttacgccc aatccaaggc tggttgaata acgctcaaac caaatggata gaccaacaag
      781 cgattcaaag cgaagtctca atgcacgaaa attgggatta ctggcgaact aaacgagggg
      841 tgattgtggt cggcaaactg ccgccggaac aaggcacagg tttaaaaact tgggcggaaa
      901 ccatgggttg gtgcttgcta agtgatgtgc aatcttgcat tgaagccagc ctgccgtatg
      961 ccgatatttg gctctccaac gagactgtca aacagcgttt attgcaagcg gatatcgtga
     1021 ttcaattcgg cacgcaaatt gtcagcaaac gggtgaatga atttttaaaa gcattccaag
     1081 gggaatattg ggtggtggaa caatcgcacg attaccataa tccaaacgct catcatcaaa
     1141 cccgttttat tgccaaagca catcactttt tgcgggtaca cccaccactt cgccaaaagc
     1201 catggttgct tgagccattg gcattatcgc aattctgctc cactttcata gagcaacaag
     1261 tgggtggcag cttaagtgaa gcctcacttg cacacaacat tcaagatgtt ttagcaatta
     1321 atggcaactt atttatcggc aatagcttat ttgttcgatt ggttgatgct ctgtgcaaac
     1381 tgccggaagg ctaccctgtt tacaccaacc gtggtgcaag cggtattgat ggcttaatcg
     1441 caacaatggc aggcattgca aaaggtagcg accgcccgac tgtcggtgtg gtaggtgata
     1501 tttccgcatt acacgatctt aactcaattg cattgctcac caaaattaac cagccgacca
     1561 ttttatttgt ggtgaataac agcggtggtg cgttgtttga tatgttgcct gttgatagca
     1621 aagcgaaaga tcaatattac cgccttgctc acaactttga atttgctcaa gtcgccacaa
     1681 tgttcgggct tgaatatatc cgcccgttta cttgggcaga tctaaaaacc aaactcaaac
     1741 acgcctatgc tcgtaaaggt gttaccattg tggaaatcaa agtaaatgaa cacgacggca
     1801 gcaatatgta taaatcattg ctaaaacaaa tttcacaggc ggaaattgcc taatcacaac
     1861 tgcccctcgc caatcctgcg aggggtaaaa atgtatcgac tatgctttcc tatcaatggc
     1921 acgctcaaca aggcacaccc gtggttttcc ttcacggctt gctcggctca caacaagact
     1981 ggcaagctgt tctccaacat ttgcaaaatt ttccgcaaat tcgaccgctt accattgacc
     2041 ttccttttca cggaaatagt aagcacatta cctgtgccga ttttgccaac ctgcgacaac
     2101 aactacacgc cacccttgaa agcctaatcg gctcacgacc tttctattta gtcggctact
     2161 cactcggtgg acgagcggca ctcgattatg tgttaaatat ggagaatccg aatctgcagg
     2221 gcgtggtgtt agaaggggcg aatatcggct taagcacaga aaacgaccgc cagattcgcc
     2281 ggcaaaatga ccgccattgg gcaaaccgtt tccgtcaaga acccatcgaa caagtgcttg
     2341 aagattggta caaacagcct gtttttgcgg atttaagcga tacggaaaga gaatgttata
     2401 ttgatagcag aaagcacaat caaggagagc aaattgctca aatgctggaa gccaccagcc
     2461 tcgccaaaca gcctgactac accgaaaaac tcaagcagac ggataagaat attgtctttt
     2521 ttatcggtga aaaggatcag aaatttcgca aaatggcatc aagccaccaa ctaccaacac
     2581 aactgattgc taatgcaggg cataacgctc atcgggctaa tgctaaaaat tttgtggaga
     2641 aattggggtt attgatactc cactccgaca gcgacctacg gtcgcaatcg gttaagcata
     2701 acggtgcagc tctgctgcac aaaagcccca gtggggctta atcagccgta ggctaaatat
     2761 aacctagtac ggctcagccg tgctaggtgt tagggctccc cctgcaaccg ttgcaataag
     2821 cgatccatcg cccgataacc aagtgcttcc gctaaatgca gttgttgaat attcgcctcg
     2881 ccggctaaat cagcaatagt ccgagaaact ttcaaaatac ggtggtaggc tcgtaccgat
     2941 aaaccgagct ttgtcaatgc agtttctaaa aatagggcat cttgtgccga taattggcaa
     3001 tctcgctcaa tttctcgggt ggtgagttga gaattgattt tacctgctcg ctcaaattgc
     3061 atttttctgg ctaaaaacac tcgcttgcga acctgctcgg tggtctctcc tcgattctcc
     3121 gtcccacttt gcaatgctcc ttgtggcaaa agtggcactt ctatagagag atcgaaacgg
     3181 tctaagaaag gtccggaaag gcggtttaaa taccgcatta cctgttgggg cgaagtgcgg
     3241 ttatgcgtgc cttgataatg ccctgtcggg cttgggttca tcgctgcaat taattgaaag
     3301 cgtgccggaa attgtacttt agcgttggct cgggaaatca caatttcgcc tgcctccaac
     3361 ggctgacgta acgcatcaag cactttacgt tcaaattcag gcaattcatc taagaacagc
     3421 acaccgttat gggcaagtga aatttccccc ggtttgggga tcgagccact gtaaaaacta
     3481 gaaataaatg tcataaaaac tagaaatagc tgtcagatta tttagaaaac aagaaatagg
     3541 tgtcaaatta ttatgagaaa aacacatagt tttcaacagg ttagaaaaat taaacccact
     3601 tggatgagtg tatcggggca tattccattt agaaacggag tcagtattcc ctatgaatcg
     3661 actttagagc gtgatttttt gatgtatttc acttatctac cttcagtaga tgaagtcgtc
     3721 tctcaaccga ctaccctacc tttcgtcaag aatgggatca cttataccta tacaccagat
     3781 ttcttcttgt catttacaga cggtcgaaag ccgatgttaa tcgaggtcaa accgaaagca
     3841 aaatggcaga agcactggaa agaatggaaa gaaaaatgga aagctgcaat acgtttttgc
     3901 caagaaaacg gttatgtatt ccatgtgtat gatgaagatc ggattcgaca tctagcgctt
     3961 ttcaatctca actatgttca gcgctataag cgaatacaac atgaacaaga agatatagat
     4021 gctattctag cccaagtaaa gctgatggga aataccacta ttgactattt actctctcga
     4081 ttttttgcag gttctctata tcgcatgaaa ggcctacaaa tcatctatca cttactggca
     4141 acgaaacaac tacattgcaa ttggtttcta ccacttaatg aatttaccga ggtatggggg
     4201 aataatgatg agtaactctg gatttacaga aaagcgctat catcaccgat tagatcgggg
     4261 acgtattatt ttgcaaaaag gtaatattta cctaaataga gaagatggag aacagtatga
     4321 attggttgat tatatggatg aaccctccca actgctcgta cgaaatctca acactcgtac
     4381 aaccaaagtc gtcagtattc atcagcttga aaatttcaaa atgaacgagc gaacggatct
     4441 ttctgtggat gtaaccgcta ttagtaatga atattgggag aaagcccaac aaaaatatga
     4501 ggcaattaaa ccgttattag ggatggatca acatcggcct tacgcagtta aggctcgtgc
     4561 agaagatgtt ggggtgaacc ctcgtacatt ataccgttgg ttacaagcct ataattccat
     4621 aggatctatc gcaggtttag tcgatcaaaa acgtggatgg caacaaggaa attcccgttt
     4681 aacgccagag caagacaagc tgatcgtgca ggtaatcaat gagttttacc tacataaaca
     4741 acgcccaact actgagcaaa ctattagaga aattcgccgc cgatgcaaaa ttgaaaaagt
     4801 ggaaagccca agcaaagaaa ccatccgtat gcgcattttg catatttcag aggaagagcg
     4861 attacggaaa cgcgggcaac gagaaaaggc acgcaacaaa tttaagccga agccaaatag
     4921 ctttcctgat gcggattatc cattgagtgt ggtacaaatt gaccatacac cagttgacct
     4981 aattattgtg gatagtaagt atcgtaaacc gattggccga ccgtttttga cggttgcgat
     5041 agatatatac agcagaatga ttgttggtta ttacctttca cttgatgcgc cttctgtaac
     5101 ttcggtggcg atgtgtattg cacgtggtat tttgccgaaa gaacgcctac tgcttgattt
     5161 aggtttgcaa ggctcagaat ggaatgcttt tggctaccca gtgaaagtgc atgtggataa
     5221 tggcccagat tttcaggctt tggatttatc taaatcttgt tctgcacacg gaatccatct
     5281 tgaatttaga ccgatggggc gacctgaata tggcggacat attgagcgtg ttatcggtac
     5341 atttatgaaa gaagttcaca gtttagcagg aacaacattc tccaacatca aagagcgtga
     5401 ctcttacgat tcggaaaaag aggccattat gactctcgat gagtttgaaa aatggttggt
     5461 acattacatt gtgaatgttt accacaaacg tgtgcattct gctttaggca tttctcctga
     5521 acaaaaatgg aagattggta tttttggaga tgaaaatgaa gtgggatgtg gttatccgca
     5581 acttcctgtt gatgaacaaa cactactact tgatttcttg ccaagtatca ctcgtaccat
     5641 tcagcataat ggtgtaacaa ttgacggact tcgttattac gatgttgcgc taaatatgta
     5701 tatcagtgat tcagatgaaa gcggtaaatc taaggaattt ctgtttcgcc gagacccgcg
     5761 aaatatcagc aaaatttggt tttatgatcc gaaattaaaa cgttacttcc caattccatt
     5821 tgcaaatcag gcaatgcccg aaatgagcat ttgggaatat agagaggttc gtagccgaat
     5881 tgcgaataaa ggtgataaat atatcaacga gcaacaagtt ttagacggtt taaccgagat
     5941 gcgtgaaatg gttgctgaat cggctcaacg gacgaaaaaa gcacgccgtc aggctgaacg
     6001 acaaaaaatg cacaaagcaa gtaagccaat tattgaaaca aaagtggaaa ctaaggctgt
     6061 tgtaccagtc gtagtaacat cgaatttgct tgctttagat gatgagagct tatcttttgg
     6121 tgaggtggac taatgcaata cgaacatgtt catgaaaaat tccgccatct tgtgacagcg
     6181 gacaatcagg agaggattgc gttcttggac gagccaagat ggttaggtta tggtgtcgcc
     6241 aaagacatta tggataattt ggtttcttta atgaataaac caaaacgccc acgaatgttg
     6301 aatttgttga ttgtcggcga ttccaataat ggaaaaacca cactgatccg ccgcttcttc
     6361 gacttgtacg gtcaggcgta tatcgacagt gattctaatg cgatttaccc tattcttctt
     6421 gccgaagccc caccaagtgc gaatgaaaaa gaattgtaca tctcattatt agagcggttc
     6481 tacgtaccat ataagccgac agatacgata gccaaacttc gttatcagac tatccatttg
     6541 ttccgagaat ttcgtgtcaa aatgttggtt attgacgagt ttcattctct gttggttggt
     6601 acaccacgct tacaacgaca ggtgatgaac gcaattaaga tgctttgtaa cgagctacaa
     6661 attccaattg tcggtgttgg tactcgtgat gcaattcggg tattacatac ggatcgacaa
     6721 catgccagtc gttttgatgt tgcggaattg ccaatatgga aactagataa ggaatttcaa
     6781 aaactcctat ttcaattcca agggatttta cctttgaggg agagttcaaa tctgcaatct
     6841 ccagaacttg ctacgaagat ccacaccatt tcaggtggga acttagggaa cgtgcatcgc
     6901 ttactaacag cttgtgcagt tcaagccatt acaagtggca cggaaaaaat caccttagac
     6961 atcattgaga aaaattcatg ggtacaacca acaaacggct atcgcaaaat aatcggataa
     7021 aaaaaggtgt tattcatacc cctatttatt caaatgaaag tattagctcg tggttaattc
     7081 gtgcatcctt tgattgtggt acagatccac tgacttttac agggttttat tgggaaaaac
     7141 atcggttgtg gacattagat ttagatcgtg gcttggaaaa tattgagcca actatctatg
     7201 atgatgtaca ggcattatcg ggtaaaatcc aactttcaga atattccttg tttcgcaggc
     7261 tttaccctat aaatgcagat gaaaccttag ctaaaggtca agtaagatgg gtgattccac
     7321 gttcggcaag gaatagaacc catcacattg gtcaacaata ttgtcctttg tgcttggatg
     7381 agtcgccaca tttacgcaat gattggcggt tagcgtggaa ttttggttgt ctcaagcata
     7441 atatgatgtt ggcgaacaga tgtttttgtt gtggtacatt gtatcaaccc catttactat
     7501 cagcggaaaa gaggcatttg aatcattgtc atcaatgtgg tgggaaactg gaacaaggca
     7561 caatggaaat gagtctagct gaaaagctga cattgcaagg tattaatcag gtactcgaaa
     7621 aagattcagg catctgtttt ggatacaagg tgtcgggtaa ggtgtggttt gatatgctcc
     7681 gctactgcat caacttattg agacgtgcat cagacagacc aaatcatgcc ttagcaaaat
     7741 ttgtagttaa tctacagatt gatgttgaaa atatatgtag ccccaaaaca ggactttctt
     7801 ttgaacaact tccgctaggt gaacgtacaa atttacttgt gaatgcctat catattttgg
     7861 gaatggaagc agattctatt cgtagtgcaa tttatttgtg tggcggaaca caaaaaacct
     7921 ttatgtttga aaaatatcct gatttttggc aagaatttat ggcactagca cccgcaggcc
     7981 caaatagaac acgaaaacgc accaagcccc aaaatgagtc tatcacagca attaatcgcc
     8041 gttgggagcg tttgaaacgc aaactacact taaataacga atgaaaatta atgtaataaa
     8101 accacaggaa gaaccttgct ccgcttgtgg caaaatttct cgcatttggc gcagatataa
     8161 tggcgaaggc tactgtgcca attgctatgc taagtggttt ccgaaaaaag agtgcagctg
     8221 ttgccatcaa ccaaagcgta tctatttgag ttcaacagta tgttgggatt gcgaaaaaca
     8281 gactgactgt gtacgttgcg gtaaggctgc gggtacattc aaaattggta aaattacccg
     8341 ttatggtgca gtttgtaatg tgtgttcacg ttattttcgt gaagaacgag aatgttttga
     8401 gtgtggtcaa ctatctagaa ctatgcttcg agcatcagag tcaggtcata gcgagctact
     8461 ctgcttgaag tgttttcaaa aatatcggtt tgcgacttgt aaaaactgtc gccgttatcg
     8521 caaagttcat gaccgtgata atcagctttg tcgaaaatgt agtgagcaac gaacttcaca
     8581 atgcccgaag tgcaaacagg atatgcctgc gggatatggt aatatttgtg cagattgttc
     8641 taggcgaact ctactgttca accttattcg aatgaatgtg catttattcc gccacaaaaa
     8701 agtgaaaaga gcatataaaa agttcatttt ttggtatctc gcaaagtgtg gcgtgagtgt
     8761 tgtgctgaaa aaatcagacg accacgtcct cttttttatg cgttgcgatg aaaattgggg
     8821 caacattcca gactaccgtg agttggttac attctttaaa cccaatggat tacggacgca
     8881 tttgactgtg ttgcgttggt tgcttgatac caatcaagtc aaagtagatg agagcttaaa
     8941 agaggaaatg gcggggttgg aacgtattca atccctattt aacaaattaa gtaactctgt
     9001 accttgtatt gcaaactact acacgcagtt acaacataaa tatgaggcgg gcaaaacatc
     9061 actgaaatct gttcgattag ctttacaacc tgcgattgat ttcatcagtt cagaatctgt
     9121 ctcgttactg ccgactcaag tacaactgaa tagctatctt gtggcaaaaa cgggacagat
     9181 tgctgctatt acaggcttta taaaccacct gaaccgagaa tatcattgtg aattagaaat
     9241 tgaccgctcc ctcattcaaa agatgaaaga aaagcagttg aagcagcaag caaaacagcg
     9301 attagcgata ctctacaagc aagaaaaact aagtatcaaa gagcaaaatg agctactctc
     9361 agtcgtatta ctgaatttgc acaacatttg gataaaatca ccgaaaaaat taagtatttc
     9421 agagatagac ggtatagcct actatgttga taatgagaaa aaatacttta taccaaaaga
     9481 cattcacata cgcctgatgg aataagctgt cgtcaatttt tatttttgcg atctgtgtcg
     9541 agaaaataat atttatgaat cgacagatga aataatattg ataaagtctc tttgtgtgtt
     9601 caacaaacag gagataaata tgacattaaa ggctcaattt cgtgaatggc ttaaaaaaga
     9661 gcaagaacat gatgaaatga tagggttcgc ccatatccct tgcattttat ctaaagtgga
     9721 tagcaaactg gcgattgtta gcggaaatgc ttatgagaag aaatatctca gatattggat
     9781 caagtgtttt aggttcgata gaaatatcag caagtatatt aaataggtta aatatctagc
     9841 t
//
LOCUS       DANLZD010000100         9743 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.100, whole genome shotgun sequence.
ACCESSION   DANLZD010000100 DANLZD010000000
VERSION     DANLZD010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9743
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.100"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            84..362
                     /locus_tag="PXE26_001806"
     CDS             84..362
                     /locus_tag="PXE26_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594369.1"
                     /translation="MEILFILLGLIGFGALLAIGFTTFAAIFGVVTTVFLSLLSLLAN
                     MVGLSIIVILISLYVLLPLNTFILIALIFSAILGFLCWYHSDRQSVNQ"
     gene            complement(413..871)
                     /locus_tag="PXE26_001807"
     CDS             complement(413..871)
                     /locus_tag="PXE26_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL5594370.1"
                     /translation="MSEPIEQVKTAFDSLLNNISKPRRRLMYQQIGRELARSQRRRIK
                     AQQNPDGSAYEPRKKPKKGVKSKIKSGKMFDKITQPRFMRLRLESEGVSLGYEGGDAV
                     IARIHQQGLIGRVRKDWDLKVKYASRELLGFTDDDLQMIEDYMINILAGS"
     gene            complement(864..1349)
                     /locus_tag="PXE26_001808"
     CDS             complement(864..1349)
                     /locus_tag="PXE26_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5594371.1"
                     /translation="MIKPDRLRAVLTQTIDIFQANPEKLILQYDKGKIKSKGSQSHSF
                     EYHYDLELIVVDFPYHPDVLFVPVLNFVRNEQWELLQNPELQDKIEFEIDHNNHESYD
                     IYIRLPLTERVIVKEQDGHLTATHADEPNLADVSPFTRLTEYEVYLKDELIYQWAEPN
                     E"
     gene            complement(1346..1567)
                     /locus_tag="PXE26_001809"
     CDS             complement(1346..1567)
                     /locus_tag="PXE26_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HDL5594372.1"
                     /translation="MSDQIDRANELAEKAREAALAKILQNQTACTSLFECEDCGEPIP
                     EKRREMVIGCTRCIECQTIYEHKQKGYRR"
     gene            complement(1716..2171)
                     /locus_tag="PXE26_001810"
     CDS             complement(1716..2171)
                     /locus_tag="PXE26_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594373.1"
                     /translation="MIVKLCQMTNKHFSPLMIVLVLVGVLANFVQFRQNESLKADLQA
                     RTTQNQLIQADNRNLANQLENSQIQLEAYQKQVDDLNQKVLAKMKQAEQRSNEILNEL
                     EKHKKWADSAVPPSVGKLLNQRKRAVSHPQIEPDNLSEKAGVPNTGNRD"
     gene            complement(2168..2734)
                     /locus_tag="PXE26_001811"
     CDS             complement(2168..2734)
                     /locus_tag="PXE26_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HDL5594374.1"
                     /translation="MSKSVKVGVFVCSVAAIIGTVKQYYSSEIRTSETGLAIIGNAEG
                     CRRDPYKCPADVITVGIGSTEASGEKINVNHKYTDKEIAERWIKDLKIAERCINRYFN
                     GDKMNENQFSAMVSAAFNMGCYNLRFYPNENGKYIQTTIHKYAMAKDFKAMCNRIPDF
                     NRSGGKVLRGLKIRREKEKALCLGQEVK"
     gene            complement(2727..2933)
                     /locus_tag="PXE26_001812"
     CDS             complement(2727..2933)
                     /locus_tag="PXE26_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HDL5594375.1"
                     /translation="MHKTEQASYFGAIFGFFGSLTLSDWGVVVSILVAILTLLLNWAY
                     RAKEYKLKEREFELKLQNQGKKNE"
     gene            complement(2939..3151)
                     /locus_tag="PXE26_001813"
     CDS             complement(2939..3151)
                     /locus_tag="PXE26_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HDL5594376.1"
                     /translation="MNTLIARQDDTLDELIFRHYGQTAGLVEQALEYNPELAHLPRLP
                     IGTVVTMPDIESRFATVAKSSVQLWD"
     gene            complement(3148..3663)
                     /locus_tag="PXE26_001814"
     CDS             complement(3148..3663)
                     /locus_tag="PXE26_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HDL5594377.1"
                     /translation="MEQRNHVISIPKVNGYESSKNAIKPTAESDETITNNGFFPNIEL
                     LEVRNAMRIDGTVINERLKQAVIEAMATVNADLKAYRLNAEQAQKANLQACDDEQING
                     ESVLVYKYKRAVYCLAVANLYERYRSYDSTKDGHDKAEELESTAGDLKRDYHFAVRDI
                     LGENRMISELI"
     gene            complement(3775..4464)
                     /locus_tag="PXE26_001815"
     CDS             complement(3775..4464)
                     /locus_tag="PXE26_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase endonuclease subunit"
                     /protein_id="HDL5594378.1"
                     /translation="MRMSPARAHFLRKTAESESATPNRENLEGLQGYDLVLAQLKAHQ
                     RQLKKIQSIERKIEFKRNNFEQYRPWVEGSLAKGSGVQDTVITTMLIWSIDIGDYPTA
                     LAIAQYVLMHDLAMPEQFERTPATALVEELAEAAKKARDQKQPFEAAVLKQANDLTAE
                     FDMPDPVRAKLLRELGELIQEAEPQTALEHYQRAIALDPQCGAKGLRDKLEKQLAKQA
                     EEPKPAEEQNE"
     gene            complement(4474..5502)
                     /locus_tag="PXE26_001816"
     CDS             complement(4474..5502)
                     /locus_tag="PXE26_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein, P2 family"
                     /protein_id="HDL5594379.1"
                     /translation="MKDLTLEKYNAYLARQAELNNLPFNALATGIKFTVQPSVQQKLY
                     EKVRESSDFLKSISFVFVDEQTGETLGLDSAHTVASTTDTSGDGERKTTSIAKLVKQT
                     YHCQQINFDTHINYKQLDMWAKFPDFQQKVANVAAKQRKRDLIMIGFNGTSRAATSDR
                     NSNPLLQDVAKGWLQKMREDAKERVMNGESTDNQVLVGKGQEYANLDALVMDATEELI
                     DEWHRDDTDLVVITGRKLLADKYFPIVNQQNAPTEELAADIVISQKRIGGLKAVRVPF
                     FPANAILITKLENLAIYVQEGTTRKHIENVPKKDRIETYESENIDYVVEDYGCAALIE
                     NITLKDKE"
     gene            complement(5516..6343)
                     /locus_tag="PXE26_001817"
     CDS             complement(5516..6343)
                     /locus_tag="PXE26_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HDL5594380.1"
                     /translation="MTTKSKWFVVATEGATTDGREISREWLTQIEENYDPKNNYGARI
                     NLEHFRWRWFEKDDPHSYSYGDVLAVKTEEREDGKLQLLAEIAPTEALVKLVKDKQKV
                     YTSVEIDLNFADTGEAYLVGLAVTDTPASLGTEYLTFCAGATHNPLADRKQKPENLVS
                     EAVEANLEFTAEPEKGAWLEKFKAMFTKAKTDNDGKFAEHEKAMELLAEQFSKVSTEN
                     DRLQTELSTLQIEFTELQKQAGEFAEKFAKLEQEPSANYTPRPKATGAKAGDVQTDF"
     gene            6493..8295
                     /locus_tag="PXE26_001818"
     CDS             6493..8295
                     /locus_tag="PXE26_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase ATPase subunit family protein"
                     /protein_id="HDL5594381.1"
                     /translation="MENENTITEYEVLAANPLHDKREAQSKYWAGYTVTEISRQLNIP
                     VSTIASWKKREKWDEISPVGRVEATLESRLNLLIMKESKNNNDYKEMDALRRLLESTA
                     RIKKYSNGGGNEADLNPNIKNRNKGDRKKPEQNAISEEQAELLINGFLDGMFHYQKKW
                     HEAGLTHRIRNILKSRQIGATYYFAHEALVDALVTGRNQIFISASKKQALQFRAYIVA
                     YAKRVADVELKGETITLPNESQLIFLGTNSKTAQSYHGNLYFDEIFWVNRFEEIRKVA
                     AGMASQKQYRITYFSTPSSITHSAYLLWSGKLFNRKRPKAEQVEIDISHANLKNGKKC
                     GDGQWRQIVNIYDAEAGGCNLFDIEQLKLENSPDEFEQLFMCEFIDDNQSVFKFTMMQ
                     RCLVDSMEVWRDYVFTDGYQRPFGNKEVWVGYDPSYTGDRSALVVIAPPKVDGGKFRL
                     LEYRTFKGADFAEQAAEIVAICAKYNVTRLAIDTTGLGVGVYEIVKKERPDAVALTYN
                     VELKSKMVLKGLDIISKGRFEFDSMHAVEVGASFMAIKKQITNSGRQVTYVADRSEEA
                     SHADLAWACLQVFINEPFDGKLEETTGTVDFLDD"
     gene            8304..9344
                     /locus_tag="PXE26_001819"
     CDS             8304..9344
                     /locus_tag="PXE26_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDL5594382.1"
                     /translation="MKKQLRKNLTQNDRLQPQAQTEIFSFGDPIPVLDRADILNYLEC
                     SAMYEKWYNPPMSFDGLAKSLRSSTHHESAIITKANILLSTCEVDSRYLSRRDLSSFV
                     KDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQFYYVPQRFDHQEHEFAKG
                     SIYHLLEPDINQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSDASQ
                     KQEDVENIRQQLKQSKGVGNFKNLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSR
                     DDVLAAHRVPPQLMGIIPNNTGGFGNVADAAEVFFITEIEPLQERLKEFNQWLGQEVI
                     KFKPSKLLQRTQ"
BASE COUNT         2443 a         2144 c         2148 g         3008 t
ORIGIN      
        1 atctaacgca gaaagaacta cttgaatttt taaattattg ctcatattat aaccttaatt
       61 gtagtatggc taagggaaaa tctatggaaa tcttatttat cttacttggg ttaattggtt
      121 tcggtgcatt attggcaata ggttttacaa cctttgctgc catttttggt gtagttacaa
      181 cagtattttt aagcctgctt tcattattgg caaatatggt tgggctctct attatcgtta
      241 ttctgatctc actttatgta ttgttaccac tcaatacttt tattttgata gcattgattt
      301 tttcagctat tttagggttt ctttgttggt atcattcaga tagacaaagc gttaatcaat
      361 aactcaagcg gtcaaaattg accgcttttt tgcaaaagtt tctattcatc atttagctac
      421 cagccaaaat attaatcata taatcctcaa tcatctgcag atcgtcatca gtaaaaccta
      481 gcaactcacg gctggcatat ttcactttta aatcccaatc tttccgcact cgtccgatta
      541 agccttgttg gtggattcgg gcgatgaccg catcaccacc ctcataacct aagctgacac
      601 cttcgctttc aaggcgtagc cgcataaaac gtggctgggt aattttgtca aacatcttgc
      661 ccgatttaat tttgcttttt acccctttct tcggcttttt gcgtggctcg tatgccgagc
      721 cgtctgggtt ttgttgtgct ttaatccgtc tgcgttggct tcgggcaagc tctcgcccga
      781 tttgttgata catcaaccgt ctgcgaggtt tgctgatatt attcagtaag ctatcaaagg
      841 cggtttttac ttgttcgatc ggttcactca tttggctctg cccactgata aatcagctcg
      901 tctttgaggt aaacctcata ttcggttaaa cgggtaaatg gcgaaacatc ggcaaggttc
      961 ggttcatcgg cgtgggttgc agttaggtgt ccgtcttgct ctttcacgat cacccgctcg
     1021 gtaagcggga ggcggatata aatatcgtag ctctcgtgat tgttgtggtc gatttcaaat
     1081 tcgattttgt cttgtagttc cgggttttgc agtagctccc attgttcatt tcgcacaaaa
     1141 tttagcactg gcacaaacaa cacgtcgggg tgatacggaa aatccaccac gattagctct
     1201 aaatcgtagt ggtattcaaa cgaatggctt tggctccctt tgcttttaat tttgcctttg
     1261 tcatattgca aaatcagctt ttcggggtta gcttggaata tatcaatggt ttgtgtgagc
     1321 acggctcgca agcgatcagg tttaatcatc tgcggtagcc tttttgctta tgctcgtaaa
     1381 tggtttggca ctcaatgcaa cgggtgcaac caataaccat ttctcggcgt ttttcgggga
     1441 ttggctctcc gcaatcctca cactcaaaaa ggctggtgca agcggtctga ttttgcagaa
     1501 tttttgcaag tgccgcctct ctggcttttt cggctaattc gttggctcgg tcgatttggt
     1561 ctgacatagt cgtccttatt aaaaaaggcg atcactcgcc ttggttgatt ttgttgtatt
     1621 gctcgatgca atgctcgaac gattcgatga tgacttggca tacctcaatg gtgttgagtc
     1681 ttttgtctag tgctttgaca agatcaccgt tggtgttaat ctcggttgcc ggtgtttggc
     1741 actccagcct tttcggacag attatcgggt tcgatttgag ggtgtgatac cgcacgcttt
     1801 cgttggttga gcagcttgcc aacgctagga ggcacggcag aatcagccca ctttttatgc
     1861 ttttccagtt cgttaaggat ttcattactt cgttgctccg cttgtttcat tttggctaac
     1921 actttctgat tgaggtcgtc cacctgtttt tgatacgcct caagctgtat ttggctgttt
     1981 tcaagctgat tggctaaatt gcggttatcg gcttgaatca gttggttttg cgtggtgcgt
     2041 gcctgtaagt ctgctttcag gctttcgttt tggcgaaact gcacgaaatt ggctaatacg
     2101 ccaactagca ccagcacaat cattagcggg ctgaaatgct tattggtcat ttggcagagt
     2161 ttgacaatca tttaacctcc tgcccgagac acagggcttt ttctttttct cggcggattt
     2221 tcaaacctct tagcacttta cctcccgagc ggttaaaatc aggtatccta ttacacatcg
     2281 ctttaaaatc cttagccata gcatatttat ggattgttgt ctgaatgtat ttaccatttt
     2341 catttggata aaatctaagg ttgtaacatc ccatattaaa tgctgctgat accatcgccg
     2401 aaaactgatt ttcgttcatt ttgtcgccat taaaataacg attgatacac ctttcagcta
     2461 ttttaagatc ttttatccaa cgctcggcaa tctctttatc ggtgtatttg tgattgacat
     2521 taattttctc accgcttgcc tcggttgagc caatgccaac cgtgattaca tcggcagggc
     2581 atttatacgg atcacgtctg caaccctccg cattgccgat aatggctaag cctgtttcgc
     2641 tggtgcggat ttcggagctg taatattgct ttaccgtccc gataatagct gcaacggagc
     2701 agacaaatac gccaactttt acacttttac tcattctttt tcccttggtt ttgtagcttt
     2761 agctcaaatt ctcgctcttt cagtttgtat tctttggctc ggtatgccca attaagtaat
     2821 aaggttaaaa tagctaccag aatactcact accacccccc aatcagatag ggtgaggcta
     2881 ccaaaaaagc caaaaattgc cccaaaatag gaggcttgtt cagttttgtg catatttttt
     2941 aatcccaaag ttgcacgctg gatttcgcca ccgttgcaaa acggctctca atatccggca
     3001 ttgtaactac agtgccgatc ggcaaacgtg gcaaatgagc cagttcgggg ttatattcta
     3061 aggcttgctc gactaagcct gccgtttgcc cgtagtgccg aaagatcagc tcgtctaagg
     3121 tgtcgtcttg gcgtgcaatc aaggtgttca tatcaattca ctaatcattc ggttttcgcc
     3181 caaaatatca cgcacggcaa agtggtaatc tcgtttcaaa tcaccggcgg tactttctag
     3241 ctcttcggct ttgtcgtggc cgtctttggt gctgtcataa ctgcggtagc gttcgtaaag
     3301 gttcgctact gcaaggcaat agaccgctcg tttatatttg taaaccagca cgctttcgcc
     3361 gttgatttgc tcatcatcac aggcttgcaa gttcgctttt tgtgcttgct ctgcattgag
     3421 gcgataggct tttaagtcgg cattgactgt tgccattgcc tcaatcaccg cttgttttag
     3481 ccgctcatta atgaccgtgc catcaatccg cattgcattt cgcacctcca gtagctcaat
     3541 gttcggaaaa aagccattat tggtgatagt ttcatcagat tctgcggtgg gcttgatcgc
     3601 atttttgctg gattcatagc cattcacttt cgggatacta ataacgtgat tgcgttgttc
     3661 cataaggttt ccgtaaggta aggggtgggg attttaaaag ggtgcaaaat gaataaatca
     3721 ccctttaaaa tccgcccctt ggctggcgtg gatacgctct atttcggctt tcgcctactc
     3781 attctgttct tctgctggtt tcggctcttc ggcttgtttg gcaagttgct tttctaactt
     3841 gtctcgcaag ccttttgcac cgcattgagg gtcgagggct atcgctcttt gatagtgttc
     3901 aagggcggtt tgtggctctg cctcttggat tagctcgcct agctcacgca gtaatttggc
     3961 tcgcactggg tcgggcatat caaattcagc ggtgaggtcg tttgcctgtt tcagcacggc
     4021 tgcctcaaac ggctgttttt ggtctcgggc tttctttgcc gcctctgcaa gctcttcaac
     4081 caaggcggtt gccggtgtgc gttcaaactg ctccggcatt gccaaatcgt gcattaaaac
     4141 gtattgagca atcgcaaggg cggttgggta atcgccaata tcaatcgacc aaatcagcat
     4201 tgtggtgata accgtgtctt gcacaccgga gcctttggca agggagcctt ccacccaagg
     4261 tcggtattgc tcaaaattgt tgcgtttaaa ctcaatcttt cgctcaatcg actggatttt
     4321 ctttaattgg cgttgatggg ctttaagttg ggctaaaact aagtcatagc cttgtaagcc
     4381 ttcaaggttt tctcggtttg gggttgcaga ctcactttct gcggttttcc gcaaaaaatg
     4441 agcccgagcc ggactcattc gcatagttcc accttactct ttatctttga gtgtaatgtt
     4501 ttcgattaat gccgcacagc cataatcttc gacaacgtag tcgatatttt ctgattcgta
     4561 ggtttcaata cggtcttttt tcggcacgtt ctcaatatgc ttgcgggttg tcccctcttg
     4621 cacatagatg gctaaatttt ccagcttagt gattaaaatc gcattcgccg ggaagaacgg
     4681 cacacgcacc gcttttaagc ccccaatgcg tttttgtgag atcacaatat cagcggcaag
     4741 ttcttcggtt ggtgcgtttt gctgattcac aatcgggaaa tatttatccg caagcaactt
     4801 gcgaccggta atcaccacta aatcggtgtc atcacgatgc cattcatcaa taagttcttc
     4861 ggtggcgtcc attacgagtg cgtcaagatt ggcatactct tgacctttgc cgactaaaac
     4921 ttggttgtct gtgctttcgc cattcattac acgctctttg gcatcttcac gcattttctg
     4981 caaccagcct tttgccacat cttgcaataa cgggttgctg ttgcgatcac tggttgccgc
     5041 acgacttgtg ccgttaaagc cgatcataat taagtcacgt ttgcgttgtt ttgccgcaac
     5101 attcgccact ttttgctgaa aatcagggaa tttcgcccac atatccaact gtttataatt
     5161 gatatgggtg tcaaaattga tttgttggca gtggtaggtt tgttttacca acttcgcaat
     5221 agaggtggtt ttgcgttcac cgtcaccgct ggtatcggtg gtgctggcca cggtgtgagc
     5281 tgaatctaaa cctaaggttt caccggtttg ctcatcaaca aacacaaagc tgatagattt
     5341 taagaaatca gagctttcac gcaccttttc atacagcttt tgctgtaccg atggttgcac
     5401 tgtgaattta atgccggttg ccaatgcatt aaacggcaag ttgtttaatt cagcttggcg
     5461 tgcaaggtag gcgttatatt tttcaagggt taaatctttc attcgtgatc ctcaattaaa
     5521 aatcggtttg tacatcacct gctttcgcac cagtggcttt tgggcgtggg gtgtaattgg
     5581 cagacggttc ttgttccagt tttgcaaatt tttcggcaaa ttcgcccgct tgtttttgca
     5641 attcggtaaa ttcgatttgc aatgtgctta gttcagtttg caagcggtcg ttttctgtcg
     5701 aaactttgct aaattgctca gctaacagtt ccattgcctt ttcgtgttcg gcaaatttgc
     5761 cgtcattgtc ggttttggct ttggtaaaca tcgccttaaa tttctccagc cacgcacctt
     5821 tttcaggttc agcagtaaat tctaaattcg cctctactgc ctcactcaca aggttttccg
     5881 gcttttgctt gcggtctgct agtgggttat gggttgcacc ggcacaaaat gtgaggtatt
     5941 ccgtgccgag gcttgccggt gtatcagtca ccgccaaacc aactaaatac gcctcgcctg
     6001 tgtccgcaaa attaaggtca atttccacag aggtataaac tttctgcttg tctttgacta
     6061 acttcactaa ggcttcggtt ggggcgattt ctgccagtaa ctgtaatttg ccgtcttcac
     6121 gttcttctgt tttaaccgct aacacatcgc catagctgta agaatgcggg tcatctttct
     6181 caaaccaacg ccagcggaaa tgctcaaggt taatacgagc accatagtta tttttcgggt
     6241 cgtaattttc ttcaatctgc gtgagccatt cacgactaat ttcgcgtcca tctgtagttg
     6301 ctccttccgt tgctaccaca aaccatttgg attttgttgt catctgtttt tccttgctct
     6361 aaaggggagg ggtaaaaatc ggatttatga tcttgttttg tgccggcggt ttcaatgtgt
     6421 ggtacgtgtt aaatcgggtt tcacagcctc aagcaaatgc ttaaacaagg tggatttttg
     6481 ataatcgcac ctatggaaaa tgaaaataca atcactgaat acgaggtgtt ggctgccaac
     6541 cctctacacg ataaacgaga ggctcaatca aagtattggg caggttacac cgtgaccgaa
     6601 atttctcgtc agctaaatat tcccgtctct accattgcaa gttggaaaaa gcgagagaaa
     6661 tgggacgaaa tcagccccgt tggacgtgtg gaagccacac tggaatcacg gctgaatttg
     6721 ctgattatga aagagagcaa aaacaataac gactacaaag aaatggatgc tttacgtcgg
     6781 ttgttggaaa gtacagcacg aatcaaaaaa tattctaacg gcggaggtaa tgaagccgac
     6841 ctcaacccaa atattaaaaa ccgtaataaa ggcgaccgca aaaagcccga gcaaaatgcc
     6901 atttccgaag agcaagccga actgttgata aacggctttt tagacggaat gttccattat
     6961 cagaaaaaat ggcacgaagc tgggctgact catcgaatcc gcaatattct taaaagtcgt
     7021 caaattggag cgacttatta ttttgctcac gaggcgttag ttgatgcgtt agtaaccggt
     7081 agaaatcaga tttttatttc cgcctcgaaa aaacaggcat tgcaatttag agcctatatt
     7141 gtggcatacg ccaaacgggt tgccgatgtg gagctaaaag gcgaaaccat taccttgccg
     7201 aacgagtctc aactaatttt cttgggtaca aactcgaaaa cggcacagtc ttaccacggc
     7261 aatctctatt ttgatgaaat cttttgggta aaccgctttg aggaaatccg caaagtggca
     7321 gcgggtatgg cgagccaaaa acaatatcgg attacttatt tttctacccc ttcgagcatt
     7381 acccattccg cctatctgct ttggtcgggc aagctgttta accgcaaacg tccgaaagcg
     7441 gaacaggtgg aaattgatat ttctcacgcc aacttgaaaa acggcaaaaa atgcggagac
     7501 ggccaatggc gacaaatcgt gaatatctac gatgccgagg caggtggctg taacctgttt
     7561 gatattgagc aactcaaact ggaaaactcg cccgatgagt tcgagcagct ctttatgtgt
     7621 gagtttattg atgataacca gtctgtgttc aagttcacga tgatgcaacg ttgccttgtg
     7681 gactcgatgg aggtgtggcg agattatgta ttcacggacg gctaccaacg cccattcggc
     7741 aataaagagg tatgggttgg gtatgacccg tcttacaccg gcgaccgctc ggcgttggtg
     7801 gtaatcgctc cgccgaaagt ggacggcggg aaattccgac tattagagta tcgcactttt
     7861 aaaggggctg attttgccga acaagcggca gaaattgtcg ctatttgtgc aaaatataac
     7921 gtgaccagac tggcgattga taccacaggg cttggtgtcg gtgtttatga aatcgtcaaa
     7981 aaagaacgac cagatgcggt ggctcttact tacaacgtag agctgaaatc caagatggta
     8041 ctaaaaggct tggatattat cagcaaagga cgatttgaat ttgactcaat gcacgctgtt
     8101 gaggttggtg cgagttttat ggcaattaaa aaacagatca ccaacagcgg acggcaagtg
     8161 acttatgtgg cagaccgttc ggaagaggca agccacgccg accttgcgtg ggcttgcttg
     8221 caggtattta ttaatgagcc gtttgatggg aaactggaag aaacgaccgg cacagtagat
     8281 tttttagatg attaggacaa aaaatgaaaa aacaattgcg caaaaattta acccaaaatg
     8341 accgcttaca accgcaagca caaaccgaaa ttttcagttt tggtgacccg attccggtgt
     8401 tagaccgtgc cgatattctc aattatttgg agtgttcggc gatgtatgag aaatggtata
     8461 acccaccgat gagctttgat ggcttggcga aatcgttaag gtcatcaaca caccacgaaa
     8521 gtgcgatcat caccaaagca aatattttgc tttccacttg cgaggttgat agccgttatt
     8581 tatcacgccg tgatttgtca tcgtttgtta aagattattt agtatttggc aacgcctatt
     8641 ttgaggtggt gcgaaatcgc cttgggcagg tacagcgaat cgaatcacct ttggcaaaat
     8701 atgtgcgaaa gggtttagag gctggtcaat tttactatgt gccacaacga ttcgatcacc
     8761 aagaacacga atttgccaaa ggctcaatct atcacttgct tgagcctgat attaatcaag
     8821 atatttacgg cttgccacaa tatctttcgg ccctgcaatc tgcgtggtta aatgagagtg
     8881 ctactctgtt tcgccgtaag tattttttaa atggagctca cgccggcttt gtgttttata
     8941 tgagcgatgc gtcacaaaaa caagaagatg ttgaaaatat tcgccagcag ctcaagcagt
     9001 caaaaggggt ggggaatttt aaaaacttgt tcgtccacgc accaaacggc aagaaagatg
     9061 gaatacagat tattccgatt gctgatgtgt cggcaaaaga tgagtttttt aatatcaaga
     9121 acgtgagccg tgatgatgtg ttagctgctc accgtgtgcc accacaactg atggggatta
     9181 tcccaaataa caccggcggt tttggcaacg tggctgatgc tgccgaggtg ttttttatca
     9241 ccgagattga gccattgcaa gagcgattga aagagtttaa tcagtggtta ggtcaagagg
     9301 ttatcaaatt taaaccgtct aaattgttac agcggacaca ataaaacaga tctttacaaa
     9361 ctgacaatac agctcctaga ttggggcttt tttaatatat aaagcaaaag ttttgcctga
     9421 ttagattata tatttcggca atttattata tcaaaacaac aaataaaata cacttaaaaa
     9481 ataatttttc ctttattttt caacgacttc accacctcca accccgcgcg gtctatccct
     9541 cacctcgccc gcacacttaa tttgtcgatt tatacgcaaa tgcaaaaagg cgatccctac
     9601 aagccccata taatcgcaaa gcgatcttaa aaactcgatc tttttacgca attttacgca
     9661 cctcaacgca aaaatattgc ttgtcaggaa aaatcgttat tctttaattg catatacata
     9721 tactgcacat tatagatttt aac
//
LOCUS       DANLZD010000101         9696 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.101, whole genome shotgun sequence.
ACCESSION   DANLZD010000101 DANLZD010000000
VERSION     DANLZD010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9696
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.101"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..544)
                     /locus_tag="PXE26_001820"
     CDS             complement(<1..544)
                     /locus_tag="PXE26_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594383.1"
                     /translation="MAKQIFKQAPLPFVGQKRMFLAQVSQILNENITDDGQGWTIIDV
                     FGGSGLLAHTAKHIKPKAHIIYNDYDGYAERLKHIPDTNRLRKQIYDIIGKSTPKNKR
                     LDPDKKSQVINIIQSFDGYIDVNCVASWLLFSGQQINSLEDLFNKIFWNGVRQTDYPS
                     AEGYLDGIEVTHESFHKLLPR"
     gene            complement(591..716)
                     /locus_tag="PXE26_001821"
     CDS             complement(591..716)
                     /locus_tag="PXE26_001821"
                     /inference="COORDINATES: protein motif:HMM:NF021626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Com family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5594384.1"
                     /translation="MQSLRLIEIRCKYCQKLLAKAKDVQHLEIKCVRCKSINKFN"
     gene            complement(863..1072)
                     /locus_tag="PXE26_001822"
     CDS             complement(863..1072)
                     /locus_tag="PXE26_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594385.1"
                     /translation="MFRNELQVIDGKRYIVLECQFRREWRVAIESRGTVTNGEAIEIC
                     QYWVKYKGVKPEQLKIVEVPDILKE"
     gene            complement(1075..1368)
                     /locus_tag="PXE26_001823"
     CDS             complement(1075..1368)
                     /locus_tag="PXE26_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594386.1"
                     /translation="MSESFSLEKALWEEPRPRLQLDLPCPVIKLEVGKRYYTINIHGV
                     DCYDGDMSFTEIDEWTYESIDDVQTKSRAEQGLLFASEADAQEWIDAMRNSSR"
     gene            complement(1361..1798)
                     /locus_tag="PXE26_001824"
     CDS             complement(1361..1798)
                     /locus_tag="PXE26_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594387.1"
                     /translation="MKTTQHILDEREQQHGNYDSFAKIYGGLRKVSDSHAEKLTWPQQ
                     IAVEMMLFKIARILNNGANHQDNYQDIAGYAMLGGGLYNPNVSAEVKALPKPLTDSIY
                     PESHLNKSSVWRLDLEFETKEEATEVLEALTGKSAGVSEVNNE"
     gene            complement(2037..2714)
                     /locus_tag="PXE26_001825"
     CDS             complement(2037..2714)
                     /locus_tag="PXE26_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage repressor protein/antirepressor Ant"
                     /protein_id="HDL5594388.1"
                     /translation="MSNQVQFPVFNFNSSAVRVIIDPNQEPWFCGADVCRILGYVNES
                     LTLQKHCKENGVSKRYLTDKMQRQQKAIFINEPNLYRLIIKSRKPEAEKFEAWVFEEV
                     LPQIRKTGKYALQNNQQNLPLAPPPKKYSFDFTEDELQSLIWAWFAFVRGIHTFRYIY
                     PMFQKLGSNIAPEIYGQGFEYSHTAQSAHKILERITREFDCDPMTNWRVLKHLRGFDP
                     AFKKPTF"
     gene            complement(2962..3801)
                     /locus_tag="PXE26_001826"
     CDS             complement(2962..3801)
                     /locus_tag="PXE26_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
                     /protein_id="HDL5594389.1"
                     /translation="MANSVMIVQGVEVKVTARDGEDYISLTDMCKAFGDSDQLIKNWL
                     QNKNTIEFLQVWEELNNPNFNLVELHQIKNNIGLNRFVMSVKKWTATGAIGLVAKAGR
                     YGSGTYAHKDIALEFGSWLSPEFKLYLIKEFQRLKQQEANESKLEWSVKRILSKANYR
                     IHTDAIKAHIIPALLNTKQHTFVYSSEADILNQALFGQTAKQWKDRNPNLKGNMRDHA
                     TVEQLTVLAALESQNALLIEQGYSQEERLAMLNRLAIQQMSSLLQTRAIEELKEKPLL
                     IEE"
     gene            4031..4408
                     /locus_tag="PXE26_001827"
     CDS             4031..4408
                     /locus_tag="PXE26_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594390.1"
                     /translation="MFSLLRDALTFAAMFTGILFPAIIHKYDLSLGTQIQLLSFVPAF
                     FVLCHFLIKRKYQRDFDRLSYLSAVVCVAMCAGVGAFSQSEMIELGFKVERVLDYVTI
                     KFLLYFWSLLLLPVVLRKLFGKD"
     gene            4540..4728
                     /locus_tag="PXE26_001828"
     CDS             4540..4728
                     /locus_tag="PXE26_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594391.1"
                     /translation="MKELFKQWLINQDSPFINSCGVECILSKVDDWLNIINANEEETE
                     TLVEWLNAFLQEVSVFVA"
     gene            complement(4732..5229)
                     /locus_tag="PXE26_001829"
     CDS             complement(4732..5229)
                     /locus_tag="PXE26_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL5594392.1"
                     /translation="MQQLIKNIEQWAEDRNLINGSTPQKQMLKLMEEFGELCAGVATN
                     EFETILDSLGDCLVICTIMRKQLKMEKLFSISHCDNTNFNCGVAAQIVQANIDLGNVA
                     SELSRGCDLSRLEDYLSGFENQLDLIAQFYKTDVQTALLYAYIQIKNRKGKMIDGVFV
                     KAEDL"
     gene            complement(5213..5413)
                     /locus_tag="PXE26_001830"
     CDS             complement(5213..5413)
                     /locus_tag="PXE26_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594393.1"
                     /translation="MTDTKRLDFIKKHKMEIRYNGLSDEFVISNHAENSQHFRMARNA
                     DLRTAIDEAMKEMRGLNNATTN"
     gene            complement(5410..5928)
                     /locus_tag="PXE26_001831"
     CDS             complement(5410..5928)
                     /locus_tag="PXE26_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HDL5594394.1"
                     /translation="MNEDKFFSVDVSNDIHILNLHETLEQAKQSCLNGATEAYEFAGD
                     MDDHESYEAYDLPYAVYGVVLGRAKSDIRPLTDEERESELFGEVEQVIEPPTLVENNG
                     WISIEDKLPPIETDVLGLCDISGMQLILIVSRELADNEWYFLSVNQYGLDDDVIAVTH
                     WQPLPKLPKDNQ"
     gene            complement(6038..6841)
                     /locus_tag="PXE26_001832"
     CDS             complement(6038..6841)
                     /locus_tag="PXE26_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdQ family protein"
                     /protein_id="HDL5594395.1"
                     /translation="MDKSTIQQISTLAVAATKEVQTDFGTVMLPEGIKLQNLEPFQAH
                     RNQFRAAFSTQRFGSLIEYATANAQENAQCFIDQEKMSAEIVFDMGNREQAGHAKHRA
                     NLVMKKTAAYKALCEINGSRRSQRDFSDFLEDWGGYLTAYHHEDEISIKNAVQAVRKM
                     TIDYARNEEHELSDFAAKKSAMESVEAKSTLQLPTHLVFTCNPYNGLDTRSFTLRVQV
                     LTGSGEPVLTARLVQAEQIEEAIATEFAEKLSDALSETSIKVNIGTIEI"
     gene            complement(6911..7270)
                     /locus_tag="PXE26_001833"
     CDS             complement(6911..7270)
                     /locus_tag="PXE26_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594396.1"
                     /translation="MAKTNVPEFLDELDCGIFKDKLATALSEVALGVLTHDKKGKVTV
                     EFSLDKMDSDSPSVQIQHKLSYVKPTKRGKSAEEDTTATPMYVHKGGALSATPEKTET
                     AVKESPSGLKALSKAAA"
     gene            complement(7306..7764)
                     /gene="ssb"
                     /locus_tag="PXE26_001834"
     CDS             complement(7306..7764)
                     /gene="ssb"
                     /locus_tag="PXE26_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5594397.1"
                     /translation="MAGINKVIIVGRLGNDPELRTMPNGDTTAKISVATSTEWTDKVS
                     GDKKQATEWHSIIAFRNLADIIGKYLKKGSQVYVEGKLRTRKWQAQDGTDRWTTEIIA
                     DQLQMLGSSSSGNSNNNWATEPAGNPPPTNPYNHVMTDSESRDFDDDIPF"
     gene            complement(7767..7964)
                     /locus_tag="PXE26_001835"
     CDS             complement(7767..7964)
                     /locus_tag="PXE26_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594398.1"
                     /translation="MARKIDAGVEIVEVDKLFIAKFFYDGKLQHTTYPQYSRQNAIML
                     INRKIERFNVGRDKPIKLYKE"
     gene            complement(7948..8133)
                     /locus_tag="PXE26_001836"
     CDS             complement(7948..8133)
                     /locus_tag="PXE26_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594399.1"
                     /translation="MNKMKQLAPFALLILLLGIVGRMDYDDHIQMQRYKCERNQGVWQ
                     VESNGNQYCGGKYGTKN"
     gene            8347..8622
                     /locus_tag="PXE26_001837"
     CDS             8347..8622
                     /locus_tag="PXE26_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594400.1"
                     /translation="MKNNILITYDLNKSGQNYAALIEKIKTLGAWAKVQQSAWYLHTS
                     YSSKEVLEMLSTVTDYNDSLFVAQLSEANWRGLSNEVSKFIQEQWWK"
     gene            complement(8625..8876)
                     /locus_tag="PXE26_001838"
     CDS             complement(8625..8876)
                     /locus_tag="PXE26_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594401.1"
                     /translation="MKNKNFEIAKVVILNEQLGSPKDLELKVVENGLSDEDKYHIKQA
                     VLKAVENGCLDPEMLASRCCSAIETINKSGINTGNGSCE"
     gene            complement(9329..9559)
                     /locus_tag="PXE26_001839"
     CDS             complement(9329..9559)
                     /locus_tag="PXE26_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594402.1"
                     /translation="MNAQATLNNHKDYILCGRKEKRTSDFINVFEVFENETTQEFVIE
                     RAMFRNGKLIDWNQSDKMNAEQAQQLWQAYIH"
BASE COUNT         2542 a         1945 c         1876 g         3333 t
ORIGIN      
        1 aacgtggtaa tagtttatga aaactttcgt gagtaacttc tattccatct aaatagcctt
       61 ccgcacttgg ataatcggtt tggcgaacac cattccaaaa tattttgtta aatagatcct
      121 ctaaactatt aatttgctgt ccgctaaata gcaaccaaga agccacacaa tttacatcaa
      181 tatacccatc aaaagactga ataatattga taacttgaga tttcttatca ggatctaatc
      241 gcttgttttt aggcgtactc ttcccaataa tgtcataaat ttgcttgcgt agcctatttg
      301 tatcgggaat atgctttagc cgctccgcat atccatcata atcattgtag atgatgtgag
      361 cttttggttt gatatgtttg gcagtatgag ctaataaccc actaccacca aatacatcta
      421 tgattgtcca accttgtccg tcatcagtaa tattctcatt taaaatttga gaaacctgag
      481 ctagaaacat tcgtttctga cctacaaacg gaagtggggc ttgtttaaag atttgctttg
      541 ccatagttct cctatggcgt tcaggcgttc ttaacgctca gacactcaat tcagttaaat
      601 ttattgattg atttacaacg tacacattta atttctaaat gttgtacatc tttcgctttt
      661 gccaataatt tttggcaata cttacagcgg atctcaatta atcttaatga ttgcatataa
      721 atacactttt acttcatttt ttgataaaat tccgcctacc tagctaggtg gcggcgtatg
      781 gctatatgca agcgtgcttt gcgtagctgg cattttaagt gttaccgcac ttataatgtc
      841 gccgttttta actcatttgt ccttattctt tcagaatatc tggcacttca acaattttca
      901 gttgctcagg ttttactcct ttatatttaa cccaatattg gcagatttcg attgcttctc
      961 cattcgttac agtacctcta gactctattg caactctcca ttcgcggcga aattggcatt
     1021 caagtacgat ataacgttta ccatctatta cttggagttc atttctaaac atagctacct
     1081 actactattt cgcattgcat ctatccattc ttgagcatct gcttcactgg caaatagtaa
     1141 cccttgttca gctctgcttt ttgtctgcac atcatcaata ctttcataag tccattcatc
     1201 aatttcggtg aagctcatat ctccatcata acagtcaacg ccatgaatat tgattgtata
     1261 atagcgttta ccaacttcaa gttttataac agggcaaggt aaatctaatt gcaatcttgg
     1321 gcgtggttct tcccacagtg ctttttctaa actaaatgac tcactcatta tttacctcac
     1381 taacaccggc acttttacca gttaaagctt ccaacacctc agttgcctct tctttggtct
     1441 caaactccaa atccagccgc caaacagagc ttttattaag gtgtgattcg gggtaaatac
     1501 tatcggttaa tggttttggt aatgctttaa cttctgccga cacatttggg ttataaagtc
     1561 ctccacctaa cattgcataa ccggcaatgt cttgataatt gtcttgatga tttgctccgt
     1621 tatttaaaat tcgggcaatt ttgaataaca tcatctcaac ggcgatttgc tgtggccaag
     1681 tgagcttttc tgcgtgtgag tcgctgactt tgcgtaaacc accataaatc ttggcaaaac
     1741 tgtcgtagtt gccgtgttgt tgttcacgtt catctaaaat gtgttgagtt gttttcatcg
     1801 tgaattttcc tttagaaata gccgcttgcg gaacaagcgg ttgggttaat tagcgttgag
     1861 ccatacaaat tttgccatcg cagtcgttgc gtaactctag atggtcagca gcaactgcaa
     1921 aggcggttaa aaagagtatg atttttgcgt atttcatcgt ctaatcctca aaatttgggt
     1981 gtggaaatcc gccgcttgat gtttcgcaag cggtcgggtt ttataatttt ttgtgattag
     2041 aacgttggct ttttaaatgc cgggtcgaaa ccacgaaggt gtttgagtac acgccaattc
     2101 gtcattgggt cgcaatcaaa ttctcgggta atccgttcaa ggattttatg agccgattgt
     2161 gcggtgtggc tatattcaaa accctgtccg tagatttcag gtgcgatatt tgagccgagt
     2221 ttttgaaaca tcgggtagat atagcggaaa gtgtgaatgc cacgcacgaa agcgaaccaa
     2281 gcccatatga ggctttggag ttcatcttcg gtaaagtcga aagagtattt ctttggcggt
     2341 ggtgcaagcg gtaggttttg ctgattattt tgcaacgcat atttaccagt cttgcgaatt
     2401 tgtggcagaa cttcttcaaa tacccacgct tcaaactttt ccgcttctgg tttgcgtgat
     2461 ttgataatca gtcggtatag gtttggttcg ttgatgaaga tcgctttttg ttgtctctgc
     2521 attttatcgg tgaggtatcg tttcgatacc ccattttctt tacagtgttt ttgcagagta
     2581 aggctttcat ttacataacc taaaattcgg caaacatctg caccgcaaaa ccacggttct
     2641 tgatttggat cgataatgac acgaacagca gatgaattga aattgaaaac agggaattga
     2701 acttgatttg acattttttg taccttttgg atttaagtat ttaatccgat cattaagtgg
     2761 gtgatcgggg ttcaacttac cctccaaaag atgggcggag cttattcaga tgtattgtat
     2821 atcgctctct cgccccgatc atttcggatt aaacctaaaa tttaggtaca aaaaaaccgc
     2881 tttatatcgg aggcggaaac cgcttttgga aagtaagtgt ggttatctta gccgaaaggg
     2941 cggttttttg tcaattagat tttattcttc aattagcaat ggcttttctt tcagttcttc
     3001 aatcgctctg gtttgtaaca gcgagctcat ttgctgaata gccaaacggt tgagcattgc
     3061 cagtcgctct tcttggctgt aaccttgctc aattagtagg gcgttttggc tttccaatgc
     3121 agcaaggacg gtaagttgct caacggtagc gtggtctcgc atattgcctt tcaggttcgg
     3181 attgcggtct ttccactgtt ttgccgtttg tccgaagaga gcttgattga gaatgtccgc
     3241 ttcgctggaa taaacgaaag tatgttgttt tgtattcagc aatgccggta tgatgtgagc
     3301 tttgatggca tcagtatgaa tgcggtagtt cgccttgctt aaaatgcgtt ttacgctcca
     3361 ttcgagctta ctttcgttcg cttcttgctg tttgagtcgt tggaactctt tgatgagata
     3421 aagcttaaat tctggactga gccaagaacc aaattcgaga gcaatatctt tgtgggcgta
     3481 agtgccgcta ccatatcgtc ctgcttttgc tactagccca atagctcccg ttgcagtcca
     3541 ttttttgaca gacatcacaa agcggtttaa gccgatgttg tttttaattt ggtgtaattc
     3601 caccaaatta aaatttggat tattcagctc ttcccaaact tgaagaaatt caatggtatt
     3661 tttattttga agccagtttt taatgagctg gtcactgtct ccaaaagctt tgcacatatc
     3721 agttaggctg atgtaatcct caccatcacg agcggttact ttgacctcca cgccttgtac
     3781 aatcattacg ctatttgcca tttcgtttct ccgtttttag gtacaaaaaa agccgttggt
     3841 ggacggcttg aaagtgcggt tatcttaatc cgaattgggg gcggtgtcaa ttagattaat
     3901 ccgtataagt atggaaccaa gttaaagagt agaactacaa cacataacca aaaaatgaaa
     3961 ttcatatctt gctcagtttt gattttgtgt aaaatacgct taagtttgtt tttcatttag
     4021 gaaaccttta atgtttagtt tattgcgtga tgctttaacc tttgctgcaa tgtttacagg
     4081 gattttattt cctgcaatta ttcataaata cgatctatca cttggtacac aaatccaatt
     4141 acttagcttt gttccagctt tctttgtgtt gtgccatttt cttattaagc gaaaatatca
     4201 acgtgatttt gacagacttt cgtatttatc tgctgtggtt tgcgtagcaa tgtgtgcagg
     4261 cgttggagca tttagccaat cagaaatgat tgagctaggt tttaaagttg agcgtgttct
     4321 tgattatgtg actatcaaat tcttactcta cttttggagc ttgctgttat tgccagttgt
     4381 gctaagaaaa ttgtttggga aagattagtt ggttatttaa agagagctat ttgtcaaacc
     4441 tcaatatcta tttttgcgat ctgcatcgaa aaaataaatt ttcgttctga cagtaaaacg
     4501 ctttcgtagt aatctcataa aaaacataag gggaacacta tgaaagagct tttcaaacaa
     4561 tggctaatca atcaggactc gccattcatt aatagctgtg gcgttgagtg tattttgtca
     4621 aaagttgatg actggctaaa cataatcaac gccaacgaag aagaaaccga aacgcttgtt
     4681 gagtggctaa atgcttttct gcaagaggtt tctgtttttg tggcttaggt actataaatc
     4741 ttctgctttc acaaacacgc catcaatcat ttttcctttt cgatttttga tttgaatata
     4801 agcatagagg agagctgttt gtacgtctgt tttgtagaat tgagcgataa gatcaagctg
     4861 attttcaaag ccgcttaagt aatcttctaa tcgagataaa tcacaacctc tagataactc
     4921 acttgctaca ttacctaaat caatattggc ctgaacaatc tgagccgcaa ctccacaatt
     4981 aaaattggta ttatcgcaat ggctaatgct aaacagtttt tccattttga gctgtttacg
     5041 cataatcgta caaatcacta gacagtcacc tagactgtct aaaatagttt caaattcatt
     5101 ggttgctaca cctgcacata attccccaaa ctcttccatt agttttaaca tttgcttttg
     5161 tggggtagag ccgttaatta aattgcggtc ttccgcccat tgttcgatgt ttttaattag
     5221 ttgttgcatt gtttagtcct ctcatttctt tcattgcttc atcaatcgcc gtgcgtaaat
     5281 cggcatttct tgccatacgg aaatgctggc tgttttcagc gtgattacta ataacaaatt
     5341 cgtctgataa gccattgtag cggatttcca ttttgtgctt tttgataaaa tctaagcgtt
     5401 tggtgtctgt cattggttgt cctttggcag ctttggaagt ggttgccagt gggttactgc
     5461 aatcacatcg tcatcaagcc catattgatt tacactaaga aaataccact cgttatcggc
     5521 aagttctctt gaaactatta aaattaactg cattcctgaa atatcgcata accctagcac
     5581 atccgtttca ataggtggta atttgtcctc aatggatatc cagccattat tttctacaag
     5641 tgttggtggt tcaataactt gttcaacttc cccaaataac tctgattctc tttcttcgtc
     5701 ggttagtggg cggatatctg attttgctct acctaaaaca acaccataaa ctgcataggg
     5761 taaatcatag gcttcatagc tttcgtgatc atccatgtca cccgcaaact cataggcttc
     5821 agtagcacca tttaaacagc tttgttttgc ttgctctaag gtttcgtgca gatttaggat
     5881 atgtatatca tttgatacat ccaccgaaaa aaatttgtct tcattcattt tctttctcca
     5941 aaataccaat agttgagaga ataataaccg cttgtattca acaagcggtc aattttcatt
     6001 aaaaacttac aagtaaactt ataagctaac ttacaagcta gatctcaatc gtaccgatat
     6061 tgaccttgat tgatgtttcg ctaagtgcat cggatagttt ttccgcaaac tcagtcgcaa
     6121 tcgcctcttc aatttgctca gcttgaacta agcgggcggt taataccggc tcaccgctac
     6181 cggttagcac ctgtacacgc agagtaaatg atcgagtgtc taagccgtta tatgggttgc
     6241 aagtaaatac aaggtgagtt ggtagttgca gtgtagattt agcttccacc gattccattg
     6301 ctgatttttt ggctgcgaaa tcgctgagtt catgttcttc gtttcgggcg tagtcaatcg
     6361 tcattttacg caccgcttgg acggcatttt taatactgat ttcatcttcg tggtggtaag
     6421 cggtcaagta gccgccccaa tcttcgagga aatcagaaaa atcacgctgt gagcggcgtg
     6481 agccattaat ttcgcataga gctttgtagg ctgcggtttt cttcatcacc aaattagcac
     6541 gatgtttagc gtgaccggct tgctctcggt tgcccatatc gaatacaatt tccgcactca
     6601 ttttctcttg gtcaataaag cattgtgcgt tttcttgggc attggcggta gcatattcaa
     6661 tcaggctacc aaaacgttgc gttgaaaacg ctgcacggaa ttgattacgg tgagcttgga
     6721 aaggctctaa attttgtaat ttaatgcctt caggtaacat tactgtgcca aaatcagttt
     6781 gaacctcttt agtcgcagct acagcaagag tagagatttg ttgaatagtt gatttatcca
     6841 ttttgagttc ctttttgttt aagtaaaaat aaagccacgc attaacgtgg cttggattga
     6901 aaataattga ttatgcagca gctttagaga gagcctttaa accgctaggg ctttctttta
     6961 ctgccgtttc tgttttttca ggtgtagcag ataatgcccc acctttatga acatacattg
     7021 gtgtggcggt agtatcttct tcggctgact taccacgttt ggtcggtttg acatagctca
     7081 atttgtgctg aatttgaaca gatgggctgt cgctatccat tttgtctaag ctaaattcaa
     7141 ccgtaacttt ccctttctta tcgtgggtta gtacgcctaa cgccacttct gaaagagctg
     7201 ttgccagctt gtctttgaaa ataccgcaat ctaattcatc taagaattca ggtacatttg
     7261 tttttgccat tttgggttct cctaattagg gtttgaataa aattattaga acggaatatc
     7321 atcatcaaaa tctcgtgatt ctgaatccgt cattacgtgg ttatatggat tggttggcgg
     7381 tgggtttcct gccggttcgg ttgcccaatt attattgctg tttccgctgc ttgagctacc
     7441 aagcatttgt agctgatcag cgatgatttc agtcgtccag cggtctgtgc cgtcttgggc
     7501 ttgccatttg cgagtacgta gtttgccctc aacatagact tgtgagcctt ttttcaggta
     7561 tttgccaata atgtcagcta aattccgaaa ggcgataatg ctatgccact ctgtggcttg
     7621 ttttttatcg cctgatactt tatctgtcca ttcggtcgaa gttgctacgc tgattttggc
     7681 ggttgtatcg ccgtttggca ttgttcgcaa ttccgggtcg ttacctaggc gaccgacaat
     7741 aatcactttg ttaattcctg ccattgttat tccttataaa gtttaattgg tttatctctg
     7801 ccaacgttga accgctcaat tttgcggtta atcaacataa ttgcgttttg gcggctgtat
     7861 tgtggatagg ttgtgtgctg taatttgccg tcataaaaaa acttggcgat aaatagttta
     7921 tctacctcaa caatctcaac accggcatca atttttcgtg ccatatttcc ctccgcagta
     7981 ttgattgcca ttactctcaa cttgccaaac gccttgattt cgttcgcatt tgtaacgttg
     8041 catttgtatg tggtcgtcat aatccattcg cccgacaatg cctaatagca aaattagcaa
     8101 ggcaaatggg gcaagttgtt tcattttgtt cataggattg tcctttaggg ttaaaaaaag
     8161 cccacgtttt acggtgggca aatggagcga cttgcgtcta gttgtgggta ttccggaaca
     8221 cacttggtga aatatgcttt ggaataagtg cctttcttta tacttgtaag gctcaagtcc
     8281 cttattgcct ctcacaactc taaggaatat aatcaaggct ctcacaactc aaataaggat
     8341 taagttatga aaaataatat tttaattact tatgatttaa ataaatcagg gcaaaattac
     8401 gcagcactca ttgaaaaaat taaaactctt ggagcttggg ctaaagtaca gcagtcagct
     8461 tggtatcttc atacttcata ttcctcaaaa gaggttttag aaatgctaag caccgtaact
     8521 gattacaatg actctctttt tgttgctcaa ttatccgagg ctaattggag aggattatcc
     8581 aatgaggtta gtaaatttat tcaagaacaa tggtggaaat agacctattc gcaacttcca
     8641 ttacctgtat ttattccgct tttattgatt gtttcaattg cagaacaaca tcgtgatgca
     8701 agcatttctg ggtccaagca accattttct acagctttaa gtacagcctg tttgatatgg
     8761 tatttatcct catcagacag gccattctct acaaccttta attccaaatc tttagggctt
     8821 cctagttgtt catttaaaat aacaactttc gcaatttcaa aatttttgtt tttcataatt
     8881 acctcgtgtt taaattattc caaaacccac tcataatagg ctttggaata aatgcgtgtc
     8941 tgcccacgcc gtcgcccgcc ctgcatttcg cctgttcagt cgggtgctgc ttgtatccgt
     9001 acttactcaa acttgagata agcgtgattg cttaggactg ataccagtgt tgccttttca
     9061 gctctccaca ccttgcgagt gtgttgccta aaccttgcca cctctgtttg gcaagtcgtt
     9121 caaatttgta tgtcagggtc taaccaacct tgccgagtga taaagcatta ctttacaact
     9181 gctcgaggtt gttaatatcg tccgcacaag cactaaattg ttaaagaaca tcccacagtc
     9241 tctgcttatc tctcggctat tgcctgctat gtgggctagg tctagaacct ttattcaagc
     9301 cctcagtaaa gggctttgat aaaaattctt agtgaatgta ggcttgccaa agttgttgag
     9361 cttgttctgc gttcattttg tcgctttggt tccagtcgat taacttgcca tttctgaaca
     9421 ttgctctttc aatcacaaac tcttgcgtgg tttcattttc aaagacctca aacacattga
     9481 tgaaatcact agtgcgtttt tctttacgtc cgcataaaat gtagtctttg tggttattta
     9541 gcgttgcttg tgcgttcatt ttggtttcct ctttgtctgt gacgttgttt gttttgatgt
     9601 gcttatatta tcttaaagat aaaaagacaa caataacaat ttaactaaaa gataataaat
     9661 ttattatcgt ttattgttat ctatttgaat ttaaaa
//
LOCUS       DANLZD010000102         9622 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.102, whole genome shotgun sequence.
ACCESSION   DANLZD010000102 DANLZD010000000
VERSION     DANLZD010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9622)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9622)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9622
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.102"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            74..1552
                     /gene="fruB"
                     /locus_tag="PXE26_001840"
     CDS             74..1552
                     /gene="fruB"
                     /locus_tag="PXE26_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused PTS fructose transporter subunit IIA/HPr
                     protein"
                     /protein_id="HDL5594403.1"
                     /translation="MLNLSAKNIRLNGSASNKEEVIRFVAAELVAKGNVAAGYEVGML
                     NRETQTSTFLGNGIAIPHGTLDTRDLVKETGVQIIQLPQGVEWGEGNTAYVVIGIAAK
                     SDEHLTLLRQLTTVLSDEEAAATLAKTQNLDEFIAVLSGKKNLPALSQELISLNIESS
                     SPITLSAINAAKLQEQGYVSQAFISDVVANKALHLGNNLFVVDSAKGNQANGIAIARN
                     TQGQTLLTVAETDNALQPLLTQLLKPEVRSQFAHFSAEQMLGLLKGESVASTPVTNVE
                     ASGNQVVGTFTIRNDNGLHARPAAVLVQTVKPFSSKISVENLDRNTAPASAKSAMKVV
                     ALGASQGHRLRFVAEGEDAQQAIEALQQAIINGLGESVSFVPAVADTIESIAVSAIPA
                     EETATAVDANTKEATFVIKNEHGLHARPSAVLVNEVKKFNAKIEVQNVDKNSPLVSAK
                     SLMKIVALGVTKGTTLRFVASGDDAEVALAAIGAAIEAGLGE"
     gene            1566..2510
                     /gene="fruK"
                     /locus_tag="PXE26_001841"
     CDS             1566..2510
                     /gene="fruK"
                     /locus_tag="PXE26_001841"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HDL5594404.1"
                     /translation="MRIATVTLNPAFDLVGKLQRIEIGEVNTVETLGLYPAGKGINVA
                     KVLADLGTKLSVTGFLGEENQGDFVNAFKHNDLADEFYRINGKTRINVKITETEADVT
                     DLNFLGFEISESDWEKFVTLSHQWESKFDLVAVCGSLPRGVTPEKFASWLESLHRQGL
                     KVVLDTSNAALTAGLTAHPWLVKPNRRELEVLVGHSLNSIEEIISAAKQLRSRGIENV
                     IISMGEQGSLWLNHEGVLQARPPRCENVVSTVGAGDSMVASLIYGLSQGWSKEQTLRF
                     ASATSALAVVQSNVGIADRAALDDIIKQTDITVISENH"
     gene            2536..4200
                     /locus_tag="PXE26_001842"
     CDS             2536..4200
                     /locus_tag="PXE26_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDL5594405.1"
                     /translation="MNISFVFPQTLGNARRFLVNEMLSAAAKQQGHNVVAANQADFVV
                     LFDNAIPQEAAGKQGAILDLEQAFAQPEASLKQAVENAQTFANATATTAVSAVSSGVK
                     NIVAVTACPTGVAHTFMSAEAIENYAKAQGWNIKVETRGQVGAGNPISAEEVAAADLV
                     FVAADIDVDLEKFKGKPMYRTSTGLALKKTTQEFEKAFAQAKIYEGGVAKADNAEAPT
                     SEKKGLYKHLMTGVSHMLPLVVAGGLLIAISFMFGIEAFKDETIAGGLPKALMDIGGG
                     AAFHLMIAVFAGYVAFSIADRPGLAVGLIGGMLATTAGAGILGGIVAGFLAGYTVKFL
                     NGAIQLPASLTSLKPILILPLLGSAIVGLLMIYVINPPVKALMDALVEWLNTMGQTNA
                     IILGIILGAMMCTDMGGPVNKAAYTFGVGLIASQQYMPMAAVMAAGMVPPIGMAIATL
                     IARSKFNTNQRDAGKASFVLGLCFISEGALPFVAADPVRVIASSILGGATAGAISMAL
                     GITLQAPHGGLFVIPFVSQPLMYLAAIAIGSLVTGVVYAAIKQKAE"
     gene            4367..4885
                     /locus_tag="PXE26_001843"
     CDS             4367..4885
                     /locus_tag="PXE26_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lhr family helicase"
                     /protein_id="HDL5594406.1"
                     /translation="MILLRGDTMQFIEFTDPDSGISYQYSEFTIANVAFIINFCSDAD
                     VISTLSALGKDITNYINTYSCCTIKFMAKEHLENSGSNIDIYAPAANHQFKRKEIIAL
                     QETLERLLFEHYVRFTPESYLFIAERDSLNRMYQRMCVPRCDFMQSFQVVYPLGVNQD
                     CFILITPKGNLK"
     gene            complement(5038..5901)
                     /gene="rarD"
                     /locus_tag="PXE26_001844"
     CDS             complement(5038..5901)
                     /gene="rarD"
                     /locus_tag="PXE26_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL5594407.1"
                     /translation="MLKGILASLAANVLFGAVYYFAILLRPLEGEAMFGFRIVVVIPF
                     ILLAIILFKQQSAFADLLQKIRQNPPLVLVILLLALNTGVQLWLFLWAPNHGQALQVS
                     FGYLLLPIVAVALGKMVFKEHFTRLKWLSLLFAVIGVGSSLFFNSTISWATWVAGLGY
                     PLYITLRRYFQINTLATFFVELLLVLPVALYYLSQVEMTPIVAENPQIYFYLGLLGLV
                     SGSAFILYILSSNLLPINVLGLLGYVEPLVMLLISFAIGEKLDANSYILMVCLLVSIG
                     LLSWDSFRSKV"
     gene            6079..6663
                     /locus_tag="PXE26_001845"
     CDS             6079..6663
                     /locus_tag="PXE26_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HDL5594408.1"
                     /translation="MKKIFWILLIAMLAVGGYSLTKYNDLMRAEEDINSVWGNVESAY
                     QRRADLIPNLVNTVKGQANFEKETLTSVIEARAKATAVTIDPSNATEEQMAKFQEAQQ
                     GVNSALSRLLVSVEKYPELKAHEAFLNLQAQLEGTENRINVERNNFNEKVKEYNKQVR
                     EFPTKLAAMIMGFKAKPQFKSEAGSDKAPTVNFN"
     gene            6745..7203
                     /locus_tag="PXE26_001846"
     CDS             6745..7203
                     /locus_tag="PXE26_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HDL5594409.1"
                     /translation="MGLFSFLSNKLPIDTQRIEQAIADLEQKTSAELRVVVERKAKIG
                     KTDNAAMLRASELFDELKMRETAEHNGVLIYLSFKPHYAAIIGDEGIHQKVDNDFWQK
                     IYATMCLDCQQGDYTQAICDAIKMVEAPLAHHFPYQADDKNELSNEVVVK"
     gene            7200..8057
                     /locus_tag="PXE26_001847"
     CDS             7200..8057
                     /locus_tag="PXE26_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HDL5594410.1"
                     /translation="MMKSLCKFLSIFNRLLLVCLALFSLNATAVTYPEPPNPFYYITD
                     YTKNTLSQQEWRTLEDALIANCAKTSSQIAVVIIPSTEGEAVSTYAHTLFNKWGIGRS
                     KNNENNGILLLIAKNDRKLFIATGRGLEGALPDAIASSIIRNDITPFFKQEQYAAGIA
                     HGLSAIMAAINGEYAPYASYGEEMQEFDDIDGLLFFLFAGIVIFLIFRPRGNSTYISP
                     SSMDQLGQILRESQRRGGGFGGGLGGGFDRGSGGFGGGFGGGFGGSRGSGDSFGGGSS
                     GGGGAGGSW"
     gene            complement(8172..8651)
                     /gene="ispF"
                     /locus_tag="PXE26_001848"
     CDS             complement(8172..8651)
                     /gene="ispF"
                     /locus_tag="PXE26_001848"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HDL5594411.1"
                     /translation="MIRIGHGFDVHAFGEDRPLMIAGVEVPYHTGFIAHSDGDVALHA
                     LTDALLGAAALGDIGKLFPDTDMQYKNADSRGLLIEAYRQVQEQGYQVGNVDVTIIAQ
                     APKMRPHIDKMRQVIADDLQCDISQVNVKATTTEKLGFTGRGEGIACEAVALLLKRA"
     gene            complement(8653..9336)
                     /gene="ispD"
                     /locus_tag="PXE26_001849"
     CDS             complement(8653..9336)
                     /gene="ispD"
                     /locus_tag="PXE26_001849"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HDL5594412.1"
                     /translation="MKRKIIAVIPASGVGSRMQAEKPKQYLQLKGKTILEHTVSIFLE
                     HPHVEKVIVAVARKDPFYSTLELLKSPKIQLVFGGETRADSVLNALQEINTENAWALV
                     HDAARPCLKRSDLDKLLQINDPQGGILAIPAVDTMKRANGTKIAHTEDRSTLWHALTP
                     QFFPAQALKQALSSAFANKLQVTDEASAMELAGYQPQLVSGRSDNIKITRPEDLALAE
                     FYLTHNLEN"
     gene            complement(9354..9620)
                     /gene="ftsB"
                     /locus_tag="PXE26_001850"
     CDS             complement(9354..9620)
                     /gene="ftsB"
                     /locus_tag="PXE26_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HDL5594413.1"
                     /translation="MTFFALLLGFFQYSFWFGKNGWSDYQEVQEEIALLKVENTKLTS
                     RNKLIEAEIYDLKNGVDALEERARLEREMVKENEMFYRIVPKNK"
BASE COUNT         2888 a         2079 c         2016 g         2639 t
ORIGIN      
        1 gtttagcaaa atatagagta aactaaccat aacattacag tttaaaaatc aactttaaat
       61 ccaaggagct aaaatgctta atttatcggc aaaaaacatc cgtttaaatg gttcagcaag
      121 caacaaagaa gaagttatcc gttttgttgc cgccgaatta gtcgccaagg gcaatgtagc
      181 agccggctat gaagtcggta tgcttaatcg tgaaacccaa acctctactt ttttaggtaa
      241 cggaattgct attccccacg gcacgcttga tacccgtgat ttagtcaaag aaaccggcgt
      301 gcaaattatc caacttccgc aaggcgtgga atggggcgaa ggcaacactg cttatgtagt
      361 tatcgggatt gcggctaaat cggacgaaca cttaacctta ctccgtcaac tcaccactgt
      421 attaagtgat gaagaggctg ctgccacatt agcgaaaacg caaaatttag atgaatttat
      481 tgccgtatta agcggtaaga aaaaccttcc tgccttatct caagagctga tttctctgaa
      541 tatcgaatct tcaagcccta tcactttatc agccattaac gccgcaaaac tacaagagca
      601 aggctatgtt tcccaagcat tcatcagcga tgtggttgcc aacaaagcgt tacatttagg
      661 caataatcta tttgtggtgg attccgccaa aggcaaccaa gctaacggta tcgctattgc
      721 ccgtaatacg caaggtcaaa ccctactaac tgtggcagaa accgacaatg ctctacagcc
      781 actattaact caattattaa aaccagaagt aagaagccag tttgctcatt tctctgcgga
      841 gcaaatgctt ggtttattaa aaggcgaaag cgtagcttca acccctgtaa ccaatgtcga
      901 agcgagtggc aaccaagtgg ttggcacatt caccattcgt aacgacaacg gcttacacgc
      961 ccgcccggct gcggtgttag tacaaacggt gaaaccgttc tcctcaaaaa tcagcgttga
     1021 aaatttagac cgcaacactg caccggcaag tgcgaaaagt gcaatgaaag tagtagcact
     1081 aggggcaagc caagggcatc gtttacgctt tgtggcagag ggagaagacg cccaacaagc
     1141 gattgaggca ttacaacaag caattattaa cggcttaggc gaaagtgttt cattcgtacc
     1201 ggcggtggca gatacgattg aaagcattgc tgtttcagca attcctgcgg aagaaactgc
     1261 gactgctgtc gatgccaata cgaaagaagc aacttttgta attaaaaacg aacacggttt
     1321 acacgctcgc ccaagtgcgg tgttggtgaa tgaagtgaaa aaattcaacg ccaaaattga
     1381 agtgcaaaat gttgataaaa attcaccgct tgtaagtgcc aaaagcttaa tgaaaattgt
     1441 tgcccttggc gtaaccaaag gcacgacgct acgctttgtg gcaagcggtg atgatgccga
     1501 agtagcactt gcggcaatcg gtgctgcgat tgaagcaggt ttaggcgaat aagcgaggaa
     1561 tcattatgcg tattgcaacc gttaccctca accctgcctt tgatttagtc ggcaaacttc
     1621 aacgtattga aatcggcgaa gtgaacaccg tagaaaccct tggtttatac cctgccggca
     1681 aaggtattaa cgttgctaaa gttttagctg acttaggcac aaaactttcg gttaccggct
     1741 ttttaggcga agaaaatcaa ggcgatttcg taaatgcctt taaacacaat gatttggctg
     1801 atgaatttta ccgtattaac ggtaaaaccc gcattaatgt caaaatcact gaaaccgagg
     1861 ctgatgtaac tgatctgaac tttctcggct ttgaaatttc ggaaagcgat tgggaaaaat
     1921 tcgtcacatt atctcatcag tgggaaagca aatttgactt agttgcagtg tgtggatctc
     1981 tccctcgtgg cgtaacgccg gaaaaatttg cttcttggtt ggaatcttta caccgccaag
     2041 gcttaaaagt ggtgttagat accagcaatg cggctctcac cgccggctta accgctcacc
     2101 cttggttagt aaaaccaaac cgccgagagc tggaagtgct ggtcgggcat tcactcaact
     2161 caatcgaaga gattattagt gcagctaaac aattacgttc ccgtggtatt gaaaatgtaa
     2221 ttatatcaat gggcgaacaa ggctctcttt ggctaaatca cgaaggcgtg ttacaagccc
     2281 gcccaccacg ttgcgaaaat gtagttagca ctgtaggtgc tggtgattca atggttgcca
     2341 gcttgatcta cggcttatct caaggttgga gcaaagagca gaccttgcgt tttgcctcag
     2401 ctacttctgc tctagctgtt gttcaaagta acgttgggat tgcagaccgt gcggcgttag
     2461 acgatattat taaacaaacc gacattaccg tgatttcaga aaatcattaa acctcaatca
     2521 aaggaacaaa ccaatatgaa tatttctttt gtatttcctc aaacactagg caacgcacgc
     2581 cgtttcttag tgaatgaaat gttatctgcc gctgccaagc aacaaggaca caatgttgtg
     2641 gcggcaaacc aagctgattt tgtggtgtta ttcgataacg caattccaca agaagctgcc
     2701 ggcaagcaag gggcaatttt ggacttagaa caagcctttg ctcaacctga agccagtctc
     2761 aaacaagcgg tcgaaaatgc acaaactttt gcaaatgcta ccgcaaccac tgcggtttca
     2821 gcggtttcat ctggtgtgaa aaatatcgtt gctgttaccg cttgcccaac tggcgtggct
     2881 catactttta tgtctgcgga agcaatcgaa aattatgcca aagcacaggg ttggaacatc
     2941 aaggttgaaa cccgtggtca agtaggagca ggaaatccaa tttccgccga agaagtcgca
     3001 gcggcagatt tagtctttgt agctgccgat attgatgtcg atttggaaaa attcaaaggc
     3061 aagccgatgt atcgcacctc aaccggttta gcattgaaga aaaccactca agaatttgaa
     3121 aaagcctttg ctcaagcgaa aatttacgaa ggtggtgtgg caaaagcgga taatgctgaa
     3181 gctccaactt ctgagaaaaa agggttatat aaacacttga tgaccggtgt atcacatatg
     3241 ttaccgctgg tggtagcagg tggcttgctc atcgctattt cctttatgtt cggaattgaa
     3301 gcctttaaag atgaaaccat cgcaggcggc ttgccgaaag ccttaatgga tattggtggc
     3361 ggtgcggcat tccacttaat gattgcggta ttcgcaggct atgtagcgtt ctcaattgca
     3421 gaccgtccgg ggttagctgt cggtcttatc ggcggtatgc ttgctaccac cgcaggagca
     3481 gggattttag gtggtatcgt agccggtttc ttagccggtt ataccgtaaa attcttaaat
     3541 ggtgcgattc agctaccggc aagtttaacc tcacttaaac ctattttgat tttaccactc
     3601 ttaggctcag cgattgtcgg cttactgatg atttatgtca tcaacccacc ggtgaaagca
     3661 ttaatggatg ccttagtgga atggttaaac acaatggggc aaaccaatgc aattatttta
     3721 ggtattattc tcggtgcgat gatgtgtacc gatatgggtg gtccggtgaa taaagcggct
     3781 tatacctttg gtgtgggttt aattgcttca caacaatata tgccaatggc agcggtgatg
     3841 gcggcaggta tggttccacc aattggtatg gcgattgcga ccctgattgc tcgtagcaaa
     3901 ttcaacacca accaacgtga tgcaggtaaa gcttcattcg tgttaggttt atgctttatt
     3961 tcagaagggg cattaccgtt cgtggcggca gaccctgtgc gtgtaattgc cagctcaatc
     4021 ttaggcggtg caaccgccgg tgcaatttca atggcactag gcattaccct acaagcccca
     4081 cacggcggtt tattcgtgat tccattcgtt tcacaaccgt taatgtactt agctgctatt
     4141 gccatcggct cattagtcac cggcgtagtc tatgccgcta tcaaacaaaa agcagaataa
     4201 agcacaaaca caaatacaaa caaaaacgga gcgaaacgct ccgtttttat atcatattgg
     4261 tacttactga attctatttc atcgaaatat caagtctaaa atattatttt tgcgatcgag
     4321 atcgaaaaaa tcattttcat cactttacga ataatatcaa ctcgttatga ttttgctacg
     4381 aggagatact atgcagttta ttgaatttac cgatcctgat agtggaattt cttatcaata
     4441 cagtgaattt actattgcta atgtcgcatt tatcattaat ttctgctcag atgccgatgt
     4501 tatatcgact ttgtccgcat taggcaaaga tatcacaaac tatataaaca cctattcctg
     4561 ttgcacaatc aaatttatgg cgaaagagca tctagaaaat agcggttcta atattgacat
     4621 ttatgccccc gcagcgaatc atcagttcaa acgtaaagaa ataattgctt tacaagaaac
     4681 ccttgagcgt ttattatttg agcattatgt acgttttaca ccagaaagct atctcttcat
     4741 tgccgagaga gattcactta accgaatgta tcagcgtatg tgtgtgccac gatgtgattt
     4801 tatgcaatct ttccaagtgg tttatccctt gggcgttaat caagattgtt tcattttaat
     4861 tacgccaaaa ggaaatctaa aatgaatcaa caacgtccag tttccgttcg tttaaagcaa
     4921 gaaggcttaa tcgcttttaa gcaagcctat cagcgagcaa aaaaagcagg tctattgaaa
     4981 ccggtcaaat aatctttaaa ccgcttgctc tacaagcgat ttatttttcc ttaattatca
     5041 caccttgcta cgaaaactat cccaactcaa taatccaatc gaaaccagca aacagaccat
     5101 caaaatatag gaattggcat cgagtttttc gccgatggca aaagaaatca gcaacatcac
     5161 caacggttca acatagccca gtaaacctaa tacattaatc ggtaataaat tgctcgagag
     5221 gatataaaga ataaaagcac tgccacttac cagccccagc aatccgaggt agaaataaat
     5281 ttgcggattt tctgccacta ttggcgtcat ttccacttgg ctgagataat aaagtgcaac
     5341 gggtaatacc agtaacaact ccacaaaaaa agtagctaac gtgttgattt gaaaataacg
     5401 gcgaagggta atataaagcg gataacccaa cccagctacc caagtcgccc acgaaatcgt
     5461 gctgttaaaa aacaaactac tgccaacacc gatgactgcg aaaagtagag aaagccattt
     5521 caggcgggta aaatgttctt taaacaccat ttttcctaga gccaccgcca caatcggtaa
     5581 aagcaagtaa ccaaacgaca cctgcaacgc ctgcccgtga ttaggagccc ataaaaacag
     5641 ccaaagctgc acgccggtgt tgagagcaag gagcaaaatg accaatacaa gcggtggatt
     5701 ttgtcgaatt ttttgcaaaa gatccgcaaa agccgattgc tgtttaaaca atataatcgc
     5761 cagcaaaata aacggaatga ctaccactat ccgaaagccg aacatcgcct ctccctctaa
     5821 cgggcgaagc aatatcgcaa aatagtaaac tgctccaaac agcacattgg ctgcaagcga
     5881 agctaaaatt cctttgagca tttggctttc ctcttatcaa caatcaaaca acaagcggtt
     5941 gactttgaac aaaaatttac aaatcttatc tacgccccat agtatgaaaa aatttgtaag
     6001 taagctagct atattcgatt tttcccgata caatgctccc aatttttcac tcttttattt
     6061 atattatagg acttcataat gaaaaagatt ttttggattt tactgatcgc catgcttgct
     6121 gttggcggtt attctttaac aaaatacaac gatttaatgc gtgcagaaga agacatcaac
     6181 tccgtatggg gaaatgttga atcggcttac caacgccgtg cggatttaat tccaaactta
     6241 gtgaataccg taaaaggtca ggctaacttt gagaaagaaa ctttaacctc tgtgattgaa
     6301 gctcgtgcaa aagcaactgc ggtaaccatt gacccaagca atgcaactga agagcaaatg
     6361 gctaaattcc aagaagccca acaaggtgta aactctgctc tttcacgctt attggtttca
     6421 gttgagaaat accctgaatt aaaagcccac gaagcgtttt taaatctaca agctcaatta
     6481 gaaggtacgg aaaaccgcat taacgttgaa cgcaataact ttaacgaaaa agtgaaagag
     6541 tacaacaagc aagtgcgtga attcccgact aaattagcgg caatgattat gggctttaaa
     6601 gcaaaaccgc aatttaaatc tgaagcaggt tctgataaag caccaaccgt aaacttcaac
     6661 taattttagt ttcaatttat tcatattaaa agcaataagc tctttcaaat ccggtgctta
     6721 ttgctttatt tttaagggga acaaatggga ttattttctt ttctctccaa caaattaccg
     6781 atagatacgc aacgcattga acaagcaatt gccgatttag agcaaaaaac ctctgccgaa
     6841 ttgcgtgtgg tggtggaacg aaaagccaaa atcggcaaaa ccgacaacgc cgctatgttg
     6901 cgagcaagtg agcttttcga tgaattaaaa atgcgtgaaa cggctgaaca taacggtgtg
     6961 ttgatctacc tttcattcaa gcctcactac gctgcgatta ttggcgatga aggcattcat
     7021 caaaaagtcg ataacgattt ttggcaaaaa atctatgcca caatgtgttt ggactgccaa
     7081 caaggcgatt acacccaagc catttgtgat gcaatcaaaa tggtggaagc tccgctcgct
     7141 caccatttcc cttatcaggc tgatgataaa aacgagcttt caaacgaggt ggtagtcaaa
     7201 tgatgaaatc cctttgcaaa tttctatcta ttttcaaccg cttgttattg gtgtgcttgg
     7261 ctctgtttag cctaaatgcc acagcggtga cctacccaga gccgcctaat ccgttttatt
     7321 atattacgga ctacaccaaa aacaccttga gccaacaaga atggcggaca ttagaagatg
     7381 ccttaattgc taactgtgcc aagacaagtt cgcaaattgc cgtggtgatt attccaagca
     7441 cggaaggcga ggcagtttca acctatgctc ataccctgtt taacaaatgg ggaatcggac
     7501 ggagcaaaaa taacgagaac aatggtatat tgttattaat tgccaaaaat gatcgcaaac
     7561 tctttattgc caccggacgt gggcttgaag gagcgttacc tgatgcgatt gcatcgagca
     7621 ttatccgcaa tgacatcacg ccattcttca aacaagagca atatgcagcc ggtatcgccc
     7681 atggcttatc cgccattatg gcagccatta acggggaata tgccccttat gcaagttatg
     7741 gcgaagaaat gcaagaattt gatgacatag acggcttact ctttttcttg tttgccggca
     7801 ttgtgatttt cctaattttc cgcccacgag gaaacagtac ctatattagt cccagctcaa
     7861 tggatcaact aggacaaata ctaagagaaa gccaacgcag aggtgggggc tttggcggtg
     7921 gtctcggagg tggctttgat cgaggctcag gtggatttgg cggaggcttc ggtggtggtt
     7981 ttggcggaag cagaggcagt ggcgacagct tcggtggtgg ttcatcaggc ggtggaggcg
     8041 ctggaggaag ctggtagttt ccgcccaatt taaaacaata caagcggtca tatttctcaa
     8101 aaaaattgcg tatttttcgc taaacgcaca aaacgctaat gaaaataaga ccgcttcctc
     8161 acttctctaa gctatgccct ttttagtaac aatgctacgg cttcacaagc tatgccttca
     8221 cctcgcccgg taaaccctaa tttttctgtt gtagtggctt ttacattcac ttgtgatata
     8281 tcgcattgta gatcgtctgc gatcacctgt ctcattttat caatatgcgg tcgcatcttc
     8341 ggagcttgag caataatggt tacatcgacg ttaccgactt gatagccctg ttcttgcact
     8401 tgtcggtaag cttcaatcaa caaaccacga ctatcggcat ttttgtattg catatcagta
     8461 tcagggaata atttgccaat atcacctaaa gctgctgcgc caagcaacgc atctgttaaa
     8521 gcgtgcagcg ctacatctcc gtcactatgc gcaatgaagc ctgtatgata aggcacttca
     8581 accccagcaa tcatcagtgg tctatcttcg ccaaaagcgt gaacatcaaa accgtgtcca
     8641 atacgtatca ttttagttct ccaaattatg tgtaaggtaa aattccgcta aggctaaatc
     8701 ttcagggcga gtgattttga tattatcact tctacctgaa accaattgtg gctggtagcc
     8761 tgcaagctcc attgcagatg cttcgtctgt tacctgaagc ttattggcaa aagcagagga
     8821 taatgcttgt tttaatgctt gagcaggaaa aaattgtggg gttaaagcgt gccataaggt
     8881 tgagcgatct tctgtgtgtg cgattttcgt gccgtttgct cttttcatcg tatctaccgc
     8941 tggaatggcg agaatgccac cttgcggatc gttaatttgc aaaagtttat ctaaatctga
     9001 ccgcttgagg caagggcgag ccgcatcgtg aactaatgcc caagcatttt cagtgttgat
     9061 ttcctgtaag gcatttagca ctgaatctgc tctcgtttct cctccaaaaa caagttggat
     9121 cttaggggat tttaggagtt ccaatgtgga ataaaaaggg tcttttcttg ccaccgctac
     9181 aatcactttt tcaacatgag ggtgttcaag aaaaatagac actgtatgct ctaagatagt
     9241 cttacccttt aattgtaaat attgttttgg tttttctgct tgcatccggc taccaactcc
     9301 tgacgccgga attactgcaa taatttttcg cttcataata tatcaattat gtattatttg
     9361 ttttttggta caattcggta gaacatctcg ttctctttta ccatttctcg ttcaagtctt
     9421 gctctctctt caagtgcatc tacgccgttc tttaaatcgt aaatttcggc ttcaattagt
     9481 ttattgcgtg aagtaagctt tgtgttttct acttttaata aagcaatttc ttcttgcact
     9541 tcttgataat cactccaacc attttttcca aaccaaaagc tatattggaa aaagccgagt
     9601 aatagggcaa aaaaagtaat ta
//
LOCUS       DANLZD010000103         9355 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.103, whole genome shotgun sequence.
ACCESSION   DANLZD010000103 DANLZD010000000
VERSION     DANLZD010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9355
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.103"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(37..321)
                     /locus_tag="PXE26_001851"
     CDS             complement(37..321)
                     /locus_tag="PXE26_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594414.1"
                     /translation="MIREVIDFIKNNKWYVLLVVLLLGLYFYQFHGGLSSDSEKWDHF
                     GSYIGGIFSAVTLLSVLHGMQLERKRFKEQKEEFENDKRVLEKRRRKEDF"
     gene            complement(416..1504)
                     /gene="hisB"
                     /locus_tag="PXE26_001852"
     CDS             complement(416..1504)
                     /gene="hisB"
                     /locus_tag="PXE26_001852"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018355873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HDL5594415.1"
                     /translation="MQPTLFIDRDGTLIDEPKTDFQIDSLEKLKFEKNVIPALLKLKG
                     KYRFVMVTNQDGLGTSSFPQADFDKPHNAMMALFNSQGIEFDDVLICPHKPEDGCDCR
                     KPHTKLLQKYIDRQLFDPANSFVIGDRATDVQLAENLGIRALQYHPEKLNWDLIAEKL
                     LGEAVTNIGERPKRFAEVIRKTKETDIKVQVWLDETGNNEISTGVGFFDHMLDQIATH
                     GGFRMNITTKGDLWIDEHHTVEDTALALGTALKQAIGDKRGIARFGFVLPMDESRAEC
                     AMDLSGRPFIKFKADFKRDKVGDFSTELTEHFFQSIAFTMLATLHIKAKGDNDHHKIE
                     SLFKVFGRTLRQCIRIEGNELPSSKGVL"
     gene            complement(1689..2756)
                     /gene="hisC"
                     /locus_tag="PXE26_001853"
     CDS             complement(1689..2756)
                     /gene="hisC"
                     /locus_tag="PXE26_001853"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDL5594416.1"
                     /translation="MTISQLSRKNIQALTPYQSARRLGGSGDVWLNANEYALSPNFDL
                     TDRTFNRYPEPQPQAVIEGYARYAGVAPENVLVSRGGDESIELIIRAFCEANDSILYC
                     PPTYGMYAVSADTCGIATKTVPLTADFQLDLAQIKANLEGVKVVFVCSPNNPTGNLIK
                     RSDLFELLQITAGKAIVVVDEAYIEFCPEARLVSELANFPHLAIIRTLSKAFALAGLR
                     CGFTLANAELIGVLQKVIAPYPLPVPVSDIAAQALSPQGIEQMKTRVAEVITLRAELQ
                     KNLENLPLVEQVFDSEANYLLFKCQDGQKVFKALWEQGIILRDQHKALGLQNCIRITV
                     GAREENLRVVEAITALSQFQR"
     gene            complement(2786..3226)
                     /locus_tag="PXE26_001854"
     CDS             complement(2786..3226)
                     /locus_tag="PXE26_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5594417.1"
                     /translation="MSINISPLASKNLTEWKLLWQQYLDFYQVNLADDIIQSTWQKVS
                     ESENVKGFGAFVDNRMVGFVHIVIHPNTWNLTECCYLEDLFVLAEYRNQGIGKELIEY
                     IYRYAQEKGYNRVYWVTDKNNHQAQQLYNKLANDSGIIQYRKNF"
     gene            complement(3293..3670)
                     /locus_tag="PXE26_001855"
     CDS             complement(3293..3670)
                     /locus_tag="PXE26_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor"
                     /protein_id="HDL5594418.1"
                     /translation="MKNPIEIYQSQDGKTQVSVQFDKETVWLSLQQMADIFGRDKSVI
                     SRHLRNIYQEGELEREATVAKNATVQIEGAREVVRLKDYLVKGYALNERRLQERGIEF
                     EQVIGLLSQYTGCLSLVGGRKFA"
     misc_feature    complement(3692..3814)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            complement(3944..4933)
                     /gene="rsmC"
                     /locus_tag="PXE26_001856"
     CDS             complement(3944..4933)
                     /gene="rsmC"
                     /locus_tag="PXE26_001856"
                     /EC_number="2.1.1.172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1207)-N(2))-methyltransferase
                     RsmC"
                     /protein_id="HDL5594419.1"
                     /translation="MLSLESEVLERHLALFENKSVLLFGDVRDDFARQLQSRAEKVAV
                     FSSYFDYARHHSEVEFGLECGLSAELAVFYWTKNKQECQFQLLQWLSQCQAGQEMLII
                     GENRAGVRSVEKLLEPFGNIAKIDSARRCGLYHFELQTVPTFDCKKFWKSYRLQDLDV
                     FDLPAVFSSAELDNGTKLLLSTFDKADRLKGKVLDLGCGAGVIGATLKQQFPKIKLTM
                     SDIHAMALESGRRTLAENQLEGEVVASDVFSHINERFDLIVSNPPFHDGVDTAYRAVE
                     ELIFQAKNHLTKGGELRIVANAFLPYPDLLDKAFGKHDVLAKSTKFKVYSART"
     gene            5063..5485
                     /locus_tag="PXE26_001857"
     CDS             5063..5485
                     /locus_tag="PXE26_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit psi"
                     /protein_id="HDL5594420.1"
                     /translation="MNRRDLLLQEMGISQWVLTNPQVLKGDAQIRLNNAVKLVVVCEE
                     DHQHSRLFADILRALKLKNSEYQWLTGEQSQRLVFEHSPIFWLIQAEEQAVKMAKSFT
                     NQTAWKNESWQDLAKSTTKRQLWQQIDTFSAQFGEQRD"
     gene            5478..5915
                     /gene="rimI"
                     /locus_tag="PXE26_001858"
     CDS             5478..5915
                     /gene="rimI"
                     /locus_tag="PXE26_001858"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HDL5594421.1"
                     /translation="MIEQIQAEDFEQLFEIEQQAHLVPWSKGTLLNNQGEKYLNLKVV
                     EQNKIVAFAISHIVLDEATLFNIAVAPDFQGKGIGKRLLSELILQLQQRKLTTLWLEV
                     RESNHSARKLYDSLGFNEVTTRKNYYPTPNGSKENAVVMALYL"
     gene            complement(5964..7811)
                     /gene="typA"
                     /locus_tag="PXE26_001859"
     CDS             complement(5964..7811)
                     /gene="typA"
                     /locus_tag="PXE26_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HDL5594422.1"
                     /translation="MQNVDISKLRNIAIIAHVDHGKTTLVDKLLQQSGTFGETRGDVD
                     ERVMDSNDLEKERGITILAKNTAINWNGYHINIVDTPGHADFGGEVERVLSMVDSVLL
                     VVDAFDGPMPQTRFVTQKAFAHGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLGASD
                     EQLDFPIIYASALNGVAGLEHEDLAADMTPLYEAIVKHVQPPQVELDAPFQMQISQLD
                     YNNYVGVIGIGRIKRGSVKPNQAVTIVDSEGKTRQGRIGQVLGHLGLQRFEATEAFAG
                     DIVAITGLGELNISDTICDINAVEALPALSVDEPTVTMFFCVNTSPFCGQEGKFVTSR
                     QILERLNKELVHNVALRVEETSNPDEFRVSGRGELHLSVLIENMRREGYELAVSRPKV
                     IYREEDGKKQEPFEQVTIDIEEQHQGSVMEALGIRKGEVRDMIPDGKGRTRLEYVIPS
                     RGLIGFRNEFMTMTSGTGLLYSTFSHYDDVKPGEIGQRKNGVLISNATGKALAYALFG
                     LQERGKLMIDHGVDVYEGQIIGIHSRSNDLTVNCLQGKKLTNMRASGKDDAIVLTTPV
                     RFTLEQALEFIDDDELVEVTPQSVRIRKRLLTENDRKRASRTTTSTSTH"
     gene            complement(7996..8673)
                     /locus_tag="PXE26_001860"
     CDS             complement(7996..8673)
                     /locus_tag="PXE26_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HDL5594423.1"
                     /translation="MSIAENLSQIHQQIQQISEQYQRDNVRLLAVSKTKPVEAIQAAI
                     EAGQRAFGENYVQEAVEKIEFFANRPELEWHFIGPLQSNKTKLVAAYFDWIQTVDRLK
                     IAERLNEQRPADKAPLNVLIQINISDEASKSGIEPDEMLPLAQAISQLPNLKLRGLMA
                     IPKPESEPEQQKVAFRKMQLLFNRLQTEFDDIDTLSMGMSDDMQAAIECGSTMVRIGT
                     AIFGARR"
     gene            8744..9283
                     /locus_tag="PXE26_001861"
     CDS             8744..9283
                     /locus_tag="PXE26_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HDL5594424.1"
                     /translation="MLDLTKIKLVITDVDGVLTDGGMYYTDQGEVMKRFHVHDGLGVK
                     MLQSCGIKVAVLSGGDTALLRKRLEVLKIDLALLGKMEKRSACFELMQQAGVTPEQTA
                     YIGDDTLDLPAFEVCGIAIATRNALDYIKEKADWVLQKAGGEGAFREVSDQILEAQGF
                     GEIFKTADGFLTVAGKMAQ"
BASE COUNT         2516 a         2106 c         1972 g         2761 t
ORIGIN      
        1 aagattatgc tgctctaaca tcataaaaaa tgtacgctaa aaatcttctt ttcttcttct
       61 cttttctaat actcttttgt cattttcaaa ttcttctttt tgctccttaa atcttttacg
      121 ttccaactgc attccatgca aaacactcaa taaagtaaca gcagaaaata taccaccaat
      181 atagctacca aaatgatccc atttttcact atctgaggat aatcccccgt gaaactgata
      241 aaaatataat cctaataaca atacaactaa cagaacatac catttattat tctttataaa
      301 gtcaataact tctctaatca tcaatatatc ctttataaca agcggtcaaa atccccaaaa
      361 actttgcaaa tttcaaccgc actttcgggc gggttaaaac ccgcccctac ggtgattata
      421 atacaccttt actgcttggt agttcattcc cttcaatacg aatgcactgt ctgagtgttc
      481 tgccgaagac tttgaacagg ctttcgattt tgtggtggtc gttgtcgcct tttgccttga
      541 tgtgcagggt ggcgagcatc gtgaaggcga tggattggaa gaagtgttcg gtgagctcgg
      601 tgctgaaatc gcccactttg tcgcgtttga aatccgcttt gaacttgatg aaaggtctgc
      661 ctgataagtc catcgcacat tccgcacggc tttcgtccat cggcaacacg aagccgaaac
      721 gggcgatgcc gcgtttgtcg ccaatcgctt gttttaatgc ggtgccgagg gcgagggcgg
      781 tgtcttccac cgtgtgatgt tcgtcaatcc acaagtcacc tttggtggtg atgttcattc
      841 taaaaccgcc gtgggtggca atttggtcaa gcatatggtc gaaaaagccc acgccggtgc
      901 tgatttcgtt gttgcctgtt tcgtccagcc acacttgcac tttgatgtcg gtctctttgg
      961 ttttacggat aacttcggca aagcgctttg gtcgctcgcc aatgttggtg acggcttcgc
     1021 ccagtagttt ttcagcaatc aaatcccagt tcagtttttc agggtgatat tgcaacgccc
     1081 gaatgccaag gttttccgcc agttgcacat cggtagcacg gtcgccaatc acaaagctgt
     1141 tggctgggtc gaacagttgg cggtcgatat atttttgtag cagtttggtg tgcggtttgc
     1201 ggcaatcgca accgtcttcg ggcttgtgtg gacaaatcag cacatcatca aattcaatcc
     1261 cttgcgagtt gaacaacgcc atcattgcat tgtgcggttt gtcgaaatct gcctgtggga
     1321 acgaactcgt gcctaagccg tcttggttcg taaccatcac aaagcggtat ttgcccttga
     1381 gtttgagcag ggcaggaatc acgtttttct cgaatttcag cttttccaag ctgtcgattt
     1441 gaaaatcggt ttttggctca tcaattaacg tgccgtcacg gtcgataaaa agggtgggtt
     1501 gcattggttt ctcctgtatc tgtatcttat tcattactct ccccacacgc caaggcatat
     1561 ggggttaagc attagtgaga gactttgcct ctctgtattc agtcccaaag ggactgactt
     1621 atgcgtaacc tagtacggct atgccgtgct aggctataaa tgtctcttaa aatactgctc
     1681 gttaaattct atctctgaaa ttggctcagt gctgtaatcg cctcaaccac cctcaaattc
     1741 tcctctctcg cccccaccgt aatccgaatg caattttgca atcctaacgc tttgtgttgg
     1801 tcacgcaaaa taatgccttg ctcccaaagt gctttgaaga ctttttgtcc gtcttggcat
     1861 ttgaatagga ggtagttggc ttcgctgtca aaaacttgtt ctacaagcgg taagttttcc
     1921 agattttttt gcaattcggc acgcagggtg atgacttccg ccacacgggt tttcatctgc
     1981 tcaatgcctt gtggggagag ggcttgggcg gcgatgtcgg aaacaggcac aggcagcgga
     2041 tacggggcaa tcactttttg taacacgccg atcagctcag cgtttgccaa ggtaaagcca
     2101 caacgcaaac ccgccaaggc aaaggctttg gatagggtgc ggataatcgc caaatgtggg
     2161 aaattcgcca gctcgcttac caagcgagct tcagggcaaa attcgatgta ggcttcgtcc
     2221 accaccacaa tcgctttgcc tgcggtgatt tgcaaaagtt cgaacaaatc cgaccgcttg
     2281 attaagttgc ctgtcgggtt gttcgggctg cacacaaaca ccactttcac gccctcgagg
     2341 ttagctttga tttgggctaa atccaactgg aaatcggcgg ttaaaggcac agttttggtc
     2401 gcaatgccac aggtgtcggc actcacggcg tacattccgt aggttggtgg gcagtagaga
     2461 atgctgtcgt ttgcctcgca aaaggctcgg ataatcagct caatgctctc atcgccccca
     2521 cgggaaacca gcacgttttc aggtgcaacg cctgcatatc gggcgtaacc ttcaatcacc
     2581 gcctgcggtt gaggttcagg gtagcggtta aaagtgcggt cggttaaatc aaagtttggc
     2641 gaaagggcat attcattggc attcagccac acatcgccac taccccccaa acgccgtgcc
     2701 gattggtaag gggtgagagc ttgaatgttt ttacgggaaa gttgtgaaat tgtcatattg
     2761 tgttcctgta taatttatac atagtttaga aattttttcg atattgaata ataccgctat
     2821 cattagctaa tttattataa agctgttgtg cttgatgatt gtttttatct gttacccaat
     2881 atactcggtt atatcctttt tcctgtgcat atcgataaat atattcaatt aattcttttc
     2941 ctatgccttg gttgcgatat tcagctaaaa caaataaatc ttccaaataa cagcattcag
     3001 ttaaattcca agtatttggg tgaatcacaa tatgaacaaa accaaccatt ctgttatcaa
     3061 caaaagcccc aaatcccttt acattttcac tctctgaaac tttctgccaa gttgattgaa
     3121 taatatcatc tgctaaattc acttgataaa aatctaaata ttgttgccac aatagtttcc
     3181 attcagtgag atttttggag gctaacggcg aaatattaat actcatattt tttcctgtta
     3241 tgcttttaat aaaataaagt gttcaatcag tttaatcatc agttcttttt gttcaggcaa
     3301 actttctgcc accaacaagg ctaagacaac cagtgtattg actgagcaaa ccaatcacct
     3361 gctcaaactc gatacctcgt tcctgcaaac ggcgttcgtt aagggcatag cctttcacca
     3421 gatagtcttt taggcgaacg acttctctag caccttcaat ttgaactgtt gcattttttg
     3481 caacagttgc ctcacgctcc agttcacctt cttggtagat atttcgtaag tgccgagaaa
     3541 taacagactt atctcgtcca aaaatatctg ccatttgctg taaacttagc cacaccgttt
     3601 ccttatcaaa ctgcacggaa acttgggttt tgccgtcttg gctttggtaa atttcaatcg
     3661 ggtttttcat attattccca aattttatct ataaaaaaat ctctcgaaag ttgccttccg
     3721 agagatcttt attgatttgc tacacttgct cggaagagtt atcttccgca cacaccaaat
     3781 gcccgaaaga tatcaggtta aagtgtggtg gtgatgtaaa gtgtagttta aattcattgc
     3841 attactccaa aacagtatga acagaattta cgtcaagccg gcagaaatat caagcacttt
     3901 tttaagcaaa taccggcttt tttataaccg tttgttctgc ctattatgtt cttgcggaat
     3961 acaccttaaa cttggtggat tttgccagta cgtcgtgttt gccgaaggct ttatcgagca
     4021 aatctgggta aggcaagaat gcgtttgcga caattcgcag ctcaccgcct ttggttaggt
     4081 gatttttagc ttggaaaatc aactcctcca ccgctcggta ggcggtatcg accccgtcgt
     4141 ggaatggtgg gttggagaca attaaatcaa accgttcatt aatgtgagag aacacatcac
     4201 ttgctaccac ttccccctct aactgatttt ccgccaaagt acgtctgccg gattccaacg
     4261 ccattgcgtg aatatcgctc atcgtcagtt tgattttcgg aaattgttgt ttgagcgttg
     4321 ccccaatcac gccagcccca cagcctaaat ctaacacttt gccttttagc ctgtctgctt
     4381 tgtcgaaggt tgaaagcaat aatttggtgc cgttatccag ctccgccgag ctaaaaaccg
     4441 ctggtagatc gaacacatct aagtcttgca agcggtagga tttccagaat tttttgcaat
     4501 cgaatgtcgg cacggtctgt agctcaaaat ggtataaacc acaacggcgt gcagagtcga
     4561 ttttggcaat attgccgaac ggttcgagca gtttttctac cgaacgaaca ccagctcggt
     4621 tttcgccgat aatcaacatt tcttgccctg cttggcattg cgacagccat tgtagcagtt
     4681 ggaattggca ttcctgcttg ttcttcgtcc aataaaacac cgctaactcg gcactcaaac
     4741 cacattctaa gccaaattca acctcactat ggtggcgtgc gtaatcaaaa tagctactga
     4801 ataccgcaac cttttccgca cgagattgca gctggcgggc aaaatcatct cgcacatcgc
     4861 caaataataa caccgacttg ttttcaaata acgccaaatg gcgttcaagt acttcgcttt
     4921 ctaaagagag cattttctta ccttatctaa aaaatttagc gtgaatatac cgaatttaag
     4981 tacagaaatc ttgaattttt tgaaaaaagt ttctgttcaa gcggagtttt gatactattt
     5041 gcaaaatttg atgaggtttt aaatgaatcg tcgtgattta ctgttacagg aaatgggtat
     5101 ttcgcaatgg gtgctaacca atccccaagt gctaaaaggc gatgctcaaa tccgcctaaa
     5161 caatgcggta aaattggtgg tagtgtgtga ggaagatcac caacacagcc ggctctttgc
     5221 cgatattctg cgtgctttaa agttaaaaaa cagcgaatat caatggctga ctggcgaaca
     5281 atcacaacgt ttggtgtttg agcattcgcc gatcttttgg ctgattcaag cggaagaaca
     5341 agcggtcaaa atggcaaaaa gttttactaa tcagaccgct tggaaaaacg agtcttggca
     5401 agatttagcc aaatctacga ccaaacgcca actttggcaa caaattgata ctttttcggc
     5461 acaatttgga gaacagcgtg attgagcaaa ttcaagcgga agatttcgag cagttatttg
     5521 aaattgagca acaagcccat ttagtgccgt ggtcaaaggg gacgttatta aataatcagg
     5581 gtgaaaaata cctgaattta aaagtggtag agcaaaacaa aattgtggct tttgccatta
     5641 gtcatatcgt gctagatgaa gcaaccttat ttaacattgc agttgctcct gattttcaag
     5701 gcaaaggcat tggcaagcgg ttactttccg aattaatttt gcaactgcaa caacggaaac
     5761 tcaccaccct gtggttggaa gtgcgagaat ccaaccattc tgccagaaaa ctctacgatt
     5821 cactcggttt taatgaagtt accacccgca aaaactatta ccccacgcca aacggtagca
     5881 aagaaaatgc ggtggtaatg gcgttatatt tgtagggaga atttaaaacc aaaagagcga
     5941 cctcagtcgc tcttttttat cagttagtgc gtgctggtac tggttgtagt acggcttgca
     6001 cgtttccggt cgttttcagt taataaacgt ttacgaatac gcaccgattg tggtgttact
     6061 tccactaatt cgtcatcgtc aataaactct aacgcttgtt ctagagtgaa acgcaccggt
     6121 gtggttaaaa cgatggcatc gtctttacct gatgcacgca tattggttaa tttcttaccc
     6181 tgtaagcagt ttacggttaa atcgtttgaa cggctgtgaa tcccgataat ttgcccttca
     6241 tatacatcaa caccgtggtc gatcattaat tttccacgct cttgtaagcc aaataatgcg
     6301 tatgctaatg ccttacccgt tgcgttagaa attaacacac cgtttttacg ctgaccgatt
     6361 tcgcccggtt ttacgtcatc atagtggctg aatgtagagt aaagtaaacc agtacctgag
     6421 gtcatcgtca taaattcgtt acggaaaccg attaagccac ggcttgggat cacatactct
     6481 aaacgggtac gacctttgcc gtccggaatc atatcacgca cttcaccttt acggatacca
     6541 agtgcttcca tcactgaacc ttggtgttgc tcttcgatat caatcgtcac ttgctcaaac
     6601 ggctcttgtt ttttgccgtc ttcttcgcgg tagattactt tcgggcgaga cactgctaac
     6661 tcgtaacctt cacgacgcat attttcgatt aataccgata agtgtaattc gccacgacct
     6721 gacacacgga attcgtctgg gttcgaagtt tcttccacac gcaatgccac gttgtggact
     6781 aattctttgt ttaaacgctc aagaatttgg cgtgaagtca caaatttacc ttcttgaccg
     6841 cagaatggcg aggtgtttac gcagaagaac atcgttaccg ttggttcatc aacgcttaat
     6901 gctggtaaag cctctactgc gttaatatca caaatagtat ctgaaatatt taattcgcct
     6961 aaaccagtaa tcgcaacaat atcgccagca aaggcttctg ttgcttcaaa acgttgtaaa
     7021 cctaaatgcc ccaacacctg accgatacga ccttggcgag ttttgccttc gctatctaca
     7081 atcgttaccg cttggttagg tttcaccgaa ccacgtttga tacgtccaat accgataacg
     7141 cccacatagt tgttgtagtc taattgcgaa atctgcattt ggaatggtgc atctaattcc
     7201 acttgtggtg gttgaacgtg tttgacaatc gcttcataaa gtggggtcat atctgccgct
     7261 aggtcttcgt gttctaagcc tgctacacca tttaaggctg aagcgtagat aattgggaaa
     7321 tctaactgct catcacttgc acctaaattt acaaacaagt cgaacacttg atccaccacc
     7381 caatcagggc gagcacctgg gcggtcaact ttattgatca ctacgattgg ttttaaaccg
     7441 tgagcgaacg ctttttgcgt gacgaaacgg gtttgcggca tcgggccatc aaaggcatca
     7501 accactaaca gaacagaatc taccattgaa agtacacgct caacctcacc accgaagtca
     7561 gcgtgccctg gggtatctac gatattgatg tgataaccat tccagttaat tgccgtattt
     7621 tttgcaagaa tggtaatgcc acgctctttt tcaagatcgt tggaatccat tacacgctca
     7681 tcaacgtcac cacgagtttc accaaaggtg cctgattgtt gtaaaagttt atcaaccaag
     7741 gtggttttac cgtggtcaac gtgggcaata attgcaatgt tacgcaattt tgaaatatct
     7801 acattttgca ttggaatatc tttaagttaa gtcaaaataa aaactctcgc ccatcaaaac
     7861 tggcgagagt caagaaatta ggaggcgtaa ttatacagac tttttccgct gttggctaca
     7921 aaacaagcgg tggaatttgc aaagtttttg gcgaatttga ccgcttgtat cagctttatg
     7981 taaaaactca gctggctaac gtctcgcccc aaaaatcgca gtcccaatcc gcaccattgt
     8041 cgagccacat tcaatcgccg cttgcatatc gtccgacatc cccattgaaa gggtatcaat
     8101 gtcgtcaaat tctgtttgca agcggttaaa aagtagctgc attttgcgaa aggcaacttt
     8161 ttgttgctct ggctcgcttt ctggtttggg aatggccatt aagccccgca gtttcaaatt
     8221 cggtaattga gaaatcgctt gggcaagtgg tagcatttca tctggttcaa tgcccgattt
     8281 cgaggcttca tcgctgatat taatttgaat cagcacgttg agcggggctt tatccgctgg
     8341 gcgttgttcg tttaaacgct cggcaatttt taatctatcc accgtttgaa tccaatcaaa
     8401 ataggcagcg accaatttgg ttttatttga ttgaagtggc ccaataaaat gccattctaa
     8461 ttcggggcga tttgcaaaaa attcgatttt ttcgaccgct tcctgcacat aattttcgcc
     8521 aaatgcacgc tgccctgcct caatcgccgc ttgaatcgcc tcaactggtt tagttttgga
     8581 gacggctaac aaacgcacgt tatctcgttg atattgttcg gaaatttgct gaatttgttg
     8641 atggatttgc gataaattct cggcaatcga catttcggtt cctttggtaa acggaggtaa
     8701 aaaagctata atggtaaaat cataccatat ttgaggcaaa aaaatgttag atctcaccaa
     8761 gattaaatta gtgattaccg atgtggacgg cgtgctaacc gatggcggaa tgtactacac
     8821 cgaccaaggc gaagtaatga aacgtttcca cgttcacgat ggtttaggcg ttaagatgtt
     8881 acaaagttgt ggcattaaag tggcagtact ctcgggcggc gatacggctt tgctccgcaa
     8941 acggttagag gtgctgaaaa ttgatctcgc tttgttaggc aaaatggaaa aacgctccgc
     9001 ctgctttgag ctaatgcagc aagccggtgt tacccctgag caaacggctt acattggtga
     9061 tgacacctta gatttaccgg cttttgaagt gtgtggcatt gcgattgcaa cccgtaacgc
     9121 cctcgattac atcaaagaaa aagcagattg ggtattgcaa aaagccggtg gtgaaggggc
     9181 gtttcgtgaa gtctccgacc aaattttgga ggctcaagga ttcggtgaaa tttttaaaac
     9241 cgcagatggt tttttaacgg tagcggggaa aatggctcag tagactcttc aagcagttaa
     9301 atttcatttt atttttgcga tctgcatcga aaaaatgtat ttctaatctg atttt
//
LOCUS       DANLZD010000104         9341 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.104, whole genome shotgun sequence.
ACCESSION   DANLZD010000104 DANLZD010000000
VERSION     DANLZD010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9341)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9341)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9341
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.104"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..196)
                     /locus_tag="PXE26_001862"
     CDS             complement(<1..196)
                     /locus_tag="PXE26_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDL5594425.1"
                     /translation="MPTKPHKEYHELVELLISRGMLINDKSYAEKKLSQVGYYRLSGF
                     WHISRKPNQDGGLSENFLENV"
     gene            complement(408..2525)
                     /gene="spoT"
                     /locus_tag="PXE26_001863"
     CDS             complement(408..2525)
                     /gene="spoT"
                     /locus_tag="PXE26_001863"
                     /EC_number="3.1.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GTP
                     diphosphokinase/guanosine-3',5'-bis pyrophosphate
                     3'-pyrophosphohydrolase"
                     /protein_id="HDL5594426.1"
                     /translation="MYLFEPLDRIIQGYLPPEQIERVKRAYVIARDAHEGQTRSSGEP
                     YITHPVAVASIIAEMKLDQEAVIAALLHDVIEDTPYTEEELAAEFGQSVADIVQGVSK
                     LDKLKFRTRQEAEVANFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAK
                     ETLEIYSPLAHRLGIEHIKNELEDLGFEAMHPQRYRVLKMAIASARGHRKELIQRIAD
                     DIRGRLEEVQIEARVYGREKHLYSIYQKMRQKDQHFHSILDIYAFRVVVDNVDNCYRV
                     LGQMHALYKPRPKRVKDYIAVPKPNGYQSLHTSMIGPHGVPVEVQIRTEDMDKMADMG
                     VTAHWRYKEGESHHNTTVQLKAQQWLQSIVELQNSAGNTAEFIDSVKSDLFSDDIFVF
                     TPKGRIVELPANATAIDFAYAVHSGIGDRCVGAMVDRNPYPLSEPLRTGQTVEIITEQ
                     GKRPNASWLNFVVSGKARAKIRQSLKNQQHDEAIALGRRQLVRAMNLRSLDELCSETI
                     QSVLDELRLSSFDELLAEIGLGNQMSNVIAQRLLGEPLLIDTDGNPENNQPLKIEGIE
                     NRLISFANCCLPIPGDEIIAHVSSGKGLAIHNACCGNVKDYATEPSNYLPVEWEIAKE
                     KAIQFETEIVLDIINEPGVLAGITSTLAKLNSNIGSINSEAREGNIYQVRVQISVENK
                     EHSELILRKLLSVKGVVKAARKQ"
     gene            complement(2635..2916)
                     /gene="rpoZ"
                     /locus_tag="PXE26_001864"
     CDS             complement(2635..2916)
                     /gene="rpoZ"
                     /locus_tag="PXE26_001864"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HDL5594427.1"
                     /translation="MARVTVQEAAEKIGNRFDLILIAARRARQLQLHTREPLVPEEND
                     KPTVIALREIEEGLITTDIMDQLENHDSIKQEAAEQEAISFLTEMSNEA"
     gene            complement(3019..3516)
                     /locus_tag="PXE26_001865"
     CDS             complement(3019..3516)
                     /locus_tag="PXE26_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDL5594428.1"
                     /translation="MAHFYEYLEFNSDEDRENQLEVYVEVKLSTDTEEKLQAVGVQGD
                     WLVMAEPYCPDCVEIVAYFQRMAKLNPNIKVKYVARKDNQERKHFDSDEQQQAVISAQ
                     KIPTIFDIRNGKTELVLSEFPQFLKDKMAANPEQFEQLKADFRMGKFGKEVEAELLAI
                     LLNTK"
     gene            complement(3541..4563)
                     /locus_tag="PXE26_001866"
     CDS             complement(3541..4563)
                     /locus_tag="PXE26_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005825060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5594429.1"
                     /translation="MSVTKKRLTLSDIAELSGVSKTTVSMILNGRGNDFRIKSETCQK
                     VKEIAKKHGYRANVYAKSLQAQRTNVIGLVIPDLTNYGFALTSRTLEKLCRENGLQLV
                     IACSDDTFEGEKKAIERLLDRQVDLLITAPTHNEPTYYQNAAQYTPMLQLDRYISGLN
                     IPSITSNDTQSISMLVENIVRAYHLKEFFYLGGQLSLSPSQNRLKGFREGLEQSHLAL
                     DENWVLHQDYQPESGYQMFAQIVEKLGRLPEAVFTASFTLLEGVMRYLTEHQQMDKLL
                     TQELHLATFDDHHLLNALPFHIHSIKQDHQQIAERTFELIQQKLAQQKIDDVKVDCEI
                     LWRKSI"
     gene            complement(4603..6033)
                     /locus_tag="PXE26_001867"
     CDS             complement(4603..6033)
                     /locus_tag="PXE26_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 32 protein"
                     /protein_id="HDL5594430.1"
                     /translation="MHIFNNGKYKSLHAQSEGELNALRQTVLSDPDFYPTYHLAPETG
                     LFNDPNGLIFDGEKYHIFAQWFPYGALHGMKHWQHFITTDFQTFSKGDLLIPDELFES
                     HGCYSGGAILWQDKIVAFYTGNTRRPSDNARIPHQNIAIFDKSGKLLEKRCIIDQAPA
                     GYTEHVRDPKPYLTAEGKIRFVLGAQRENLTGTALIYEMDDLNATPRLIAELEVHNFD
                     NSNVFMWECPDLFSLGGKDLFVWSPQGKLRESHQFQNNYHATYALGELNGNRLRAEHI
                     EELDYGFDFYAPQTVENSDRILFGWVGLPDLTYPTDKYQWHSMLTLPRKLSLQNGKVI
                     QNPIVNVGELQAVEMSENFAIENLDTAYLQISVENQPLVLDFFSNEQGQKLSLRFENG
                     VLSLDRSQTEQTELMEKFGSVRHCKIEQLETIEIFFDRSVVEIFVNGGEKVLTSRFFI
                     AKRENVVKSSRPIQVKVAKVLPISVE"
     gene            complement(6138..7061)
                     /locus_tag="PXE26_001868"
     CDS             complement(6138..7061)
                     /locus_tag="PXE26_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoimidazole riboside kinase"
                     /protein_id="HDL5594431.1"
                     /translation="MSKIWVTGDAVVDLIPDGEHHYLKCAGGAPANVAVGVSRLGVEA
                     GFIGRVGNDPLGKFMREVLQAENVCTKQMILDAQHRTSTVIVGLDNGERSFTFMVNPS
                     ADQFLEIGDLPEFNQGDFLHCCSIALINDPSRSTTIEGIRRVKKAGGYVSFDPNLRES
                     LWKSLDEMKTVVNSVVAMADILKFSEEELTLLTETETLEQATQAITAQYPEKLIIITL
                     GKDGAIYHFNGKSQVVAGKALKPVDTTGAGDAFVSGLLAGLAQTPNWHDETVLVEVIR
                     KANASGALATTAKGAMSALPNKAELDAFLAE"
     gene            complement(7178..8605)
                     /gene="miaB"
                     /locus_tag="PXE26_001869"
     CDS             complement(7178..8605)
                     /gene="miaB"
                     /locus_tag="PXE26_001869"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HDL5594432.1"
                     /translation="MAKLHITTWGCQMNEYDSSKMADLLNSTHGFELTENPEDADVLL
                     LNTCSIREKAQEKVFSQLGRWKNWKKDKPNLIIGVGGCVASQEGEHIRDRAPYVDIVF
                     GPQTLHRLPEMINQIRGGKSSIVDISFPEIEKFDRLPEPKAEGPTAFVSIMEGCNKYC
                     SFCVVPYTRGEEVSRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGGICTFA
                     ELLRLVAAIDGIDRLRYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGSDRVLTMM
                     KRNHTALEYKAIIRKLRAVRPEIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFS
                     FIYSARPGTPAADLPDNVSDDEKKERLSRLQQRINHQAMQFSRAMLGTEQRILVEGPS
                     KKDLMELTGRTETNRVVNFVGTPDMIGKFVDVKITDVYTNSLRGEVIRTEDQMGLRVV
                     ESAESVIARTRKEDDLGVGKYVVNL"
     gene            complement(8822..9322)
                     /gene="crr"
                     /locus_tag="PXE26_001870"
     CDS             complement(8822..9322)
                     /gene="crr"
                     /locus_tag="PXE26_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005702996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HDL5594433.1"
                     /translation="MGLFDKLFGSKQKESQEIKIYAPLTGEIVNIEDVPDVVFSEKIV
                     GDGVAIRPSGDTIVAPVNGTIGKIFETNHAFSIESEEGVELFVHFGIDTVELKGEGFT
                     RLAQEGQTVKVGEPIIKSDLALLEGKAKSVLTPIVISNMDEISNLSKLNGQVVAGESV
                     VLTLTK"
BASE COUNT         2566 a         2123 c         1803 g         2849 t
ORIGIN      
        1 gtacattttc gagaaaattt tcgctaagcc caccatcttg attaggcttt ctagatatat
       61 gccaaaatcc agataaacga taatacccta cctgagataa ttttttctct gcatagcttt
      121 tatcatttat gagcattcct ctagatatga gtagttctac taattcgtga tactctttat
      181 gtggttttgt aggcataaaa ttgaaggcat tttaagaaag gcaaggacgt agcttgacac
      241 tctaagtcga ttacatttag taaacctcag ggacaggggc tacgccacga ttgcaaggga
      301 ttatacattt tagctgatta aagtcaaaag gtttcatcaa ttaataatag caatactgta
      361 cttttaagga ctataattgc aaaaaactga taaaatttta ccgcttgtta ctgcttacgg
      421 gccgctttta caacaccttt tacacttaat agcttacgga gaatcagctc agaatgctct
      481 ttattttcca cagaaatttg tactctcact tgatagatat ttccttctct tgcctcgcta
      541 ttaatgctgc caatgttgct atttaatttg gcaagcgttg atgtgatccc cgcgagtacc
      601 cctggttcat tgataatatc cagtacgatt tccgtttcaa attgaatcgc tttttctttg
      661 gcaatttccc attccacagg taaataatta ctcggctctg ttgcgtaatc tttcacatta
      721 ccacaacaag cattgtggat tgccaatcct ttacctgaac tgacgtgagc aataatttca
      781 tcacccggta taggtaagca acagtttgca aaactgataa ggcggttctc aatcccttca
      841 attttaagcg gttgattatt ttctggatta ccatcagtat caattaatag tggctcccct
      901 aataagcgtt gagcgataac attactcatt tggttaccta gaccaatttc agccagtagc
      961 tcatcaaagc ttgataaacg tagctcgtct aatacggatt gaatagtttc tgaacacaat
     1021 tcatcaagtg agcgtaaatt cattgcccga actagctgtc tacgcccaag tgcaatcgcc
     1081 tcatcgtgct gctgattttt aagcgattga cgaattttag ccctcgcctt accacttact
     1141 acaaaattta accacgatgc atttgggcgc ttaccttgct cggtaataat ttccaccgtc
     1201 tgtcctgttc gtagcggttc tgaaagtgga tacggattgc gatcaaccat cgcacctaca
     1261 caacgatccc caatgcctga atgcaccgca taggcaaagt caatagcggt agcattcgcc
     1321 ggcaattcaa caatacgccc tttcggggta aagacgaaaa tatcgtcaga gaacagatcc
     1381 gatttaacgc tatcaataaa ttctgctgta ttgccggcac tgttttgcaa ttcaacaata
     1441 ctttgtagcc attgctgggc tttgagttga acggtcgtgt tatggtgcga ctcgccctct
     1501 ttgtaacgcc agtgagctgt tacccccata tccgccattt tgtccatatc ttcggtgcga
     1561 atctgtacct ccaccggtac accgtgcggg ccaatcatcg aagtgtgtaa agattgatag
     1621 ccgttcggtt ttggcacggc aatataatct ttcacccgtt tcggacgagg cttatacagt
     1681 gcgtgcatct gccctaatac acggtaacaa ttatctacat tatcaaccac tactcggaaa
     1741 gcataaatat ctaaaatcga atgaaaatgt tgatctttct ggcgcatttt ttggtaaatg
     1801 gaatagagat gtttttcacg cccatacaca cgggcttcaa tttgcacctc ttctaaccga
     1861 ccacgaatat catcggcaat gcgttgaatt agctctttac gatgtcctct ggcactggca
     1921 atagccattt tcagtacccg ataacgttgc gggtgcattg cctcgaagcc taaatcttcc
     1981 aactcgtttt taatatgctc tattcccaag cgatgtgcca acgggctata aatctctaag
     2041 gtttctttcg ctatacggcg gcgtttatcc ggacgcaaag caccaagcgt acgcatatta
     2101 tgggttcggt cggcaagttt aattaacaca acccgaatgt ctttggtcat tgccaaaatc
     2161 attttacgga agtttgccac ttctgcctct tggcgggtgc ggaattttaa tttatccagc
     2221 ttagaaacgc cttgtacaat atctgctacg ctctgtccaa attccgccgc cagttcttct
     2281 tcggtgtaag gtgtatcttc aatcacatcg tgcaacaaag ccgcaatcac cgcttcttga
     2341 tcgagcttca tttccgcaat aatcgacgcc actgctaccg ggtgagtaat atagggctca
     2401 ccgctagagc gtgtttgtcc ctcgtgagca tcacgggcta tcacataagc acgttttaca
     2461 cgctcaatct gctcgggtgg caaatagcct tgaataattc gatctaaagg ttcaaaaaga
     2521 tacacgttat acctcaacaa cagaaataaa aatggacaac gaatttgcaa attttgagga
     2581 aaatcctacc gcttgcagac tcaattgtcc attctctatt tacgaaaaat aaaattacgc
     2641 ttcgttgctc atttcagtta aaaatgaaat cgcctcttgc tccgccgctt cttgcttaat
     2701 agagtcgtga ttttccagct gatccataat gtcagttgta attaaacctt cttcaatttc
     2761 acgtaatgca atcacggtcg gcttatcgtt ttcttcaggc acaagtggct cacgggtgtg
     2821 aagttgtaat tgtcttgcac gacgtgcagc aattaagatt aaatcaaaac ggttgccaat
     2881 tttctccgct gcttcttgta cggttacacg agccataaat ttactccaaa gatttattcg
     2941 gttttattca taaaaagatt gcgaattata cagaaattcc gccaattccg caatgaaagc
     3001 gggctaaatt cacaaaattt atttggtatt cagtaaaatc gccaataatt cagcctcaac
     3061 ctctttgccg aattttccca ttctaaaatc ggcttttagt tgctcgaatt gctcagggtt
     3121 cgctgccatt ttatctttta aaaattgcgg aaattcagat aacactaatt ctgttttgcc
     3181 attacgaata tcaaaaatag ttggaatttt ttgcgcagaa atgaccgctt gttgctgttc
     3241 atcgctgtca aaatgtttgc gttcctgatt atctttgcga gccacatatt tcaccttaat
     3301 gttaggattg agctttgcca ttcgctggaa ataagccaca atttccacac aatcggggca
     3361 atatggctct gccattacca gccagtcccc ttgcacgcca acagcttgca gtttttcttc
     3421 cgtatctgtg gaaagcttga cctccacata cacttctaat tgattttcac gatcttcatc
     3481 gctgttaaat tctaaatatt cgtaaaaatg tgccataatt ttgtcttttc ctatctcatc
     3541 ttaaatggat ttacgccata aaatttcaca atcaacttta acgtcatcta ttttctgttg
     3601 cgctaacttt tgctgaatta attcaaaggt acgttcggca atttgttggt ggtcttgctt
     3661 aattgaatga atatgaaaag gtagtgcatt cagtaaatgg tgatcatcaa aggttgctaa
     3721 atgcagttct tgagtcaata atttatccat ttgttggtgt tcagtcagat agcgcattac
     3781 tccctcaagt agggtaaaag aggctgtgaa taccgcttct gggagcctgc caagtttttc
     3841 aactatctga gcgaacattt gatagcccga ttccggctga tagtcttgat gcagaaccca
     3901 attttcatca agtgccaaat gtgactgctc caaaccttca cggaagcctt ttaaacgatt
     3961 ttgacttggc gagagtgaaa gttgtccacc taagtaaaaa aactctttta agtgataagc
     4021 ccgtacaata ttttccacca acatactgat actttgtgta tcattactgg tgatagaagg
     4081 gatattcaac ccagaaatat agcggtctag ctgtaacatt ggggtatatt gtgccgcatt
     4141 ttgataataa gtcggctcat tatgtgtcgg agcagtaatc agtaaatcta cctgtctgtc
     4201 taataaacgc tctatcgctt tcttctcacc ttcaaaggta tcatccgagc aagcgatcac
     4261 tagctgtaac ccgttttcac ggcataattt ctctaaggtt cttgaggtca gagcaaagcc
     4321 ataattcgtt aaatcgggaa tgactaaacc gatcacattc gtgcgttgag cctgtaatga
     4381 ttttgcatat acattagcac gataaccgtg ttttttagcg atctctttca ctttttggca
     4441 ggtttcggat ttgattctaa aatcattgcc ccgcccattt aaaatcatac tgactgttgt
     4501 tttagatacg ccgctgagtt ccgcaatatc actgagcgtt aggcgttttt tagtcacact
     4561 tatctccttt tagcataaaa atgggcatta ctgcccattg ctttattcta cgctaattgg
     4621 caatactttt gctactttca cttgaatcgg acgagagctt tttacgacat tttcacgctt
     4681 agcgataaaa aagcgtgaag tcagcacttt ttccccgccg tttacgaaaa tttccaccac
     4741 agaacggtca aagaaaatct cgattgtctc taattgttca attttgcaat gacgaaccga
     4801 gccaaatttt tccatcaatt ctgtttgttc ggtttggcta cgatctaagc tcaacacccc
     4861 attttcaaaa cgtaagctga gcttttgccc ctgttcattg ctgaaaaaat ccaacacaag
     4921 cggttgattt tccacagaaa tttgcaagta ggcagtatcc aaattctcga ttgcaaaatt
     4981 ttctgacatt tcgaccgctt gtaattcgcc tacattcacg attgggtttt gtatcacttt
     5041 gccgttttgc agggaaagtt tacgaggcaa tgtcagcatt gaatgccact gatatttatc
     5101 agttgggtaa gtgagatcag gcaagccgac ccagccaaac aaaatgcgat cggaattttc
     5161 caccgtttgc ggtgcgtaaa agtcaaagcc gtagtccagc tcttcaatat gctctgcccg
     5221 taatctgttg ccgtttagct cgccaagtgc gtaagtggcg tggtagttat tttggaattg
     5281 atggctttca cgcagtttgc cttgtggcga ccacacaaac agatctttac caccaagtga
     5341 gaacagatcc ggacactccc acataaacac attgctgtta tcaaaattgt ggacttccag
     5401 ttctgcgatt aaacggggtg tggcatttaa atcgtccatt tcataaatta acgccgtgcc
     5461 ggtcaagttt tcacgctgag cccccaacac aaaacgaatt ttgccctctg cggtaaggta
     5521 aggtttcggg tcacgcacgt gttcggtgta gcctgccggt gcttggtcga taatgcaacg
     5581 cttttccaat aatttgcccg atttatcaaa aatcgcgata ttttggtgag gaatgcgggc
     5641 attatctgat gggcggcgtg tattgccggt gtaaaaagcg acaatcttat cttgccataa
     5701 aatcgcccca cctgaataac agccgtggga ttcaaacagc tcatcgggaa tcagcaaatc
     5761 ccctttactg aacgtttgaa aatcggtagt gatgaaatgc tgccaatgtt tcattccatg
     5821 taatgcccca taaggaaacc attgggcgaa aatatggtat ttttcaccat cgaaaatcaa
     5881 gccgtttggg tcattaaata agcctgtttc gggagcgaga tgataggttg ggtaaaaatc
     5941 gggatcagat aaaacggttt ggcgaagagc gtttaattcg ccctcgcttt gtgcgtgcag
     6001 gcttttgtat ttgccgttgt tgaaaatgtg catagagtgt tcctgtcatt tcagaaatta
     6061 cgatggtgca agcgtccacg cttgtaccct tttgtaaaaa atgaggcaca agcgtggaca
     6121 cttgcgccat cattacatta ttccgccaaa aatgcgtcta actccgcttt attcggtaat
     6181 gccgacatcg ccccttttgc tgtggtggct aacgcaccgg aagcatttgc tttgcggatc
     6241 acttcaacta acacagtttc atcgtgccaa ttcggcgttt gagcaagacc ggctaataat
     6301 ccgctgacaa aggcatctcc ggcaccggtg gtatccacag gtttcaaggc tttgccggca
     6361 acgacttggc tttttccgtt gaaatggtag attgcaccgt ctttgccaag ggtgataata
     6421 atcaatttct ccggatactg agcggtaata gcttgtgtgg cttgttccaa agtttctgtc
     6481 tcggttaata aggtcagctc ttcttcggaa aatttgagaa tatccgccat cgccaccaca
     6541 gaatttacca ctgttttcat ttcatcaagg ctcttccaga gcgattcacg caagtttgga
     6601 tcaaacgaaa catagccacc cgcctttttc actcggcgaa tcccttcaat ggtagtggaa
     6661 cgggatgggt cgttaatcaa ggcaatagaa cagcagtgta agaaatcacc ttggttaaat
     6721 tcaggtaaat cgccgatttc taaaaattgg tcggcactcg gatttaccat aaaagtaaaa
     6781 ctacgctcac cgttatctaa gccaacaatc acggtggaag tgcggtgctg agcgtctaaa
     6841 atcatctgtt tggtgcaaac attttctgcc tgtaacactt ctcgcataaa tttacccaga
     6901 gggtcgttac ccacacgccc gataaatcct gcctcaaccc ctaaacgaga aacgcctact
     6961 gcaacattcg ccggagcacc accggcacat tttaaatagt gatgttcgcc gtcgggaatt
     7021 aaatccacca ccgcatcgcc tgttacccaa atcttactca tctcatacac ctttaattag
     7081 tcacaaaaca ccaagctaaa acgatttagc atttattcga ttatatacta aaagaccgct
     7141 tgtacatacc tacaagcggt cattttttct ttaattttta cagattaacc acgtatttac
     7201 ctacacctaa atcatcttct ttacgagtgc gggcaatcac gctttctgcc gattccacca
     7261 cacgtaatcc catttggtct tcggtacgaa tcacttcgcc acggagtgag ttggtataaa
     7321 catcggtgat tttcacatcg acaaatttgc caatcatatc cggtgtgcca acaaagttta
     7381 ctacacggtt agtttcggtt ctgccggtta attccatcaa gtctttctta gacgggcctt
     7441 caaccaaaat gcgttgttct gtaccgagca ttgcacggct aaattgcatt gcttggtggt
     7501 tgatgcgttg ttgtaaacgg gataatcgct cttttttctc atcatcggag acattatcag
     7561 gcagatctgc cgctggtgta cccggtcgag ccgagtagat aaagctaaag ctcatatcaa
     7621 agttcacttg ctcgatcact ttcattgttt gctcgaaatc ctctgcggtt tcgcccggga
     7681 agcctacaat aaagtccgaa ctaatttgaa tctcaggtcg aacagcacgc aatttacgga
     7741 taatcgcttt gtattccaac gctgtgtggt tacgcttcat cattgttaat acacggtctg
     7801 aaccactttg aatcggtaaa tgtaagaaac tgaccaattc aggtgtatca cgataaactt
     7861 cgataatatc atcggtaaat tcaatcgggt ggctggtggt gtaacgtaag cggtcaatac
     7921 cgtcaatcgc tgccactaag cgtaataatt cggcaaaggt acaaatgccg ccatcaaaag
     7981 tttcaccacg gtaagcattt acgttttgac cgagtaaatt aacctcacgc acaccttgtg
     8041 ccgcaagttg ggcgatttca aataatacgt catccaccgg gcgggaaacc tcttcgccac
     8101 gagtgtaagg cacaacgcag aacgaacaat atttattgca gccttccata attgaaacga
     8161 atgctgtagg gccttcggct tttggctccg gcaagcggtc aaatttttca atttccggga
     8221 aagaaatatc gacaatcgag cttttaccgc cacggatttg gttgatcatt tcaggcaaac
     8281 ggtgcaaagt ttgtggcccg aaaacaatat ctacataagg ggcacgatca cggatatgct
     8341 ccccttcttg tgaagccaca caaccgccaa caccgataat caggttcggt ttatcttttt
     8401 tccagttttt ccaacgcccg agttgcgaga atactttttc ttgtgctttt tcacggatag
     8461 aacaagtgtt tagcagcaac acgtctgcat cttcagggtt ttcagtcagt tcaaaaccgt
     8521 gagtagagtt taggagatcc gccatttttg atgagtcgta ctcattcatt tggcagcccc
     8581 aagtggtaat atgtaattta gccataacgt ttaaaattaa taaataattc aataacttag
     8641 aaaagaaaag cgtaaagcaa tttattattt ttgacttaaa ataaaccctt tacgcaaaat
     8701 ttgtggcgtt attttacctt gttgcctatt ttttatctat aaataatcgc catttatccg
     8761 attttaccta aaacaaaaaa gccacgatct tccatcgtgg cttccagcta agtaggaggt
     8821 attatttggt taaggttaaa accacgcttt caccggcaac aacttggcca tttaatttag
     8881 ataagttgct gatttcatcc atatttgaaa tcacgattgg tgttaatact gatttggctt
     8941 tgccttcaag tagagctaaa tcagatttaa tgatcggctc gcccactttt acggtttgac
     9001 cttcctgtgc aaggcgagta aagccttcgc cttttaattc aacagtatca ataccgaagt
     9061 gaacaaataa ttccacgcct tcttcagatt caatcgaaaa agcgtggttg gtttcaaaaa
     9121 ttttgccgat agtcccattt actggagcaa cgatagtgtc tccactcggg cgaattgcca
     9181 caccgtcacc tacaattttt tcagagaaaa caacatcagg cacatcttca atatttacga
     9241 tttcacctgt taatggcgca tagattttga tttcttgact ctctttttgt tttgagccga
     9301 ataatttatc aaataaaccc atcttaaaat ctcccttaga t
//
LOCUS       DANLZD010000105         9337 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.105, whole genome shotgun sequence.
ACCESSION   DANLZD010000105 DANLZD010000000
VERSION     DANLZD010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9337
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.105"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            24..239
                     /locus_tag="PXE26_001871"
     CDS             24..239
                     /locus_tag="PXE26_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HDL5594434.1"
                     /translation="MFPEFRDLITQLKQNNSHFARLFDKHNELDQRIKNMEANIELAT
                     HEEVEALKKEKLHLKDQLYAILKQESA"
     gene            complement(298..1455)
                     /locus_tag="PXE26_001872"
     CDS             complement(298..1455)
                     /locus_tag="PXE26_001872"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HDL5594435.1"
                     /translation="MSLDLADIRTQITNLDRNLLKLLAERHRLAFDVVRSKEITQKPL
                     RDLEREKILLQELVNFAEAENYQLDPQYVTQIFQRIIEDSVLTQQNYLQNKLNAQKEE
                     QVSIAFLGMRGSYSNMASRQFAKKYQGTLAELSCHSFNEVFEKVSLGEADFGVLPLEN
                     TTSGSINEVYDLLQHTDLTLVGELAYPIKHCVLANGTVDLAEVDTIYTHPQPAQQCSQ
                     FLAGLDKVHIKYCESSSHAMQMVARLNKPNIVALGNEDGGKLYGLTNIKTDIANQAHN
                     ITRFIVVAKEAVQVSPQVQTKTLLLMTTTQQAGALVDALMVFKNHHIRMMKLESRPIY
                     GKPWEEMFYVELEANIHSENTQKALAELEQVTSYLKVLGCYPSEIIEPVKL"
     gene            complement(1577..3643)
                     /gene="prlC"
                     /locus_tag="PXE26_001873"
     CDS             complement(1577..3643)
                     /gene="prlC"
                     /locus_tag="PXE26_001873"
                     /EC_number="3.4.24.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase A"
                     /protein_id="HDL5594436.1"
                     /translation="MSNPLLNYTGLPAFSQIKPEHIKPAVEAVIKECRETVEKVAQIE
                     NPTWENFYMPQAMAEDKFSRAWSPVGHLNAVKNSPELREAYQACLPLLSEYSTWAGQH
                     QGLYQGYVKLKNSPEFETYSVAQKKAIENSLQDFELSGISLPAEKQKRYGEISARLSE
                     LNSQFSNNVLDATMGWDIVITDEAQLKGLPESALEAAKLSAESKGKKGYRFTLEIPSY
                     LPVMTYCENKALREEMYRAYVTRASDQGPNAGKWDNSAVIDEILKLRHEKAQLLGFKT
                     YSDYSLATKMAENPQQVLDFLNDLAARSKAQGKNELCDLKKFAKAHFGIEHLDLWDIP
                     FYSEKQKQALYSVNDEELRPYFPENRVLSGLFEVIKRIFGMRVEEQKDVDVWHKDVRF
                     FNIFDKNDRLRGSFYLDLYARENKRGGAWMDDCINQKRLADGTLQKPVAYLTCNFNKP
                     IGDKPALFTHDEVTTLFHEFGHGIHHMLTEIDVGDVAGINGVPWDAVELPSQFLENWC
                     WEEEALAFISGHYETGEPLPKAKLEQLLAAKNFQAAMFVLRQLEFGLFDFRLHTEYDP
                     SKQGQVLALLKEVKDQVAVAKGVEWARTPHSFSHIFAGGYAAGYYSYLWAEVLSADAY
                     SRFEEEGIFNPETGQSFLDNILTRGGSEEPMVLFERFRGRKPTLDALLRHKGIVGNAE
                     PVDCTQ"
     gene            complement(3774..4514)
                     /gene="pflA"
                     /locus_tag="PXE26_001874"
     CDS             complement(3774..4514)
                     /gene="pflA"
                     /locus_tag="PXE26_001874"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase 1-activating protein"
                     /protein_id="HDL5594437.1"
                     /translation="MSVVGRIHSFESCGTVDGPGIRFILFLQGCLMRCKYCHNRDTWD
                     LDGGKEITVEELMKEVTTYKHFMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGINT
                     CLDTNGFVRHYSPVVDEMLEVTDLVLLDLKQLNDEVHQDLVGVSNKRTLDFARYLHKL
                     NKPTWVRYVVVPGYTDDDDSAHRLGQFIQGMDNIEKVELLPYHRLGAHKWETLGYKYE
                     LEGVMSPPKEDLERIQKIIESYGHTVKF"
     gene            complement(4763..5788)
                     /locus_tag="PXE26_001875"
     CDS             complement(4763..5788)
                     /locus_tag="PXE26_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL5594438.1"
                     /translation="MSKQDLIRSSVAEYLTFITATGESQVDAVYADENVWLSQKMMAV
                     LYDVDVRTISYHLKKIFSDNELAENSVIQFFWITAQDGKNYHTKHYNLSAIIAVGYKV
                     NSERAVQFRKWATEIVHSFAIKGFAMDDERLKNDGTILGKKYFEEQLARIREIRLSER
                     KFYQKITDIYATAVDYDRTATATKRFFATVQNKLHWAIHGHTAAELIMARANAEKPNM
                     GLTNWKDAPQGKIYPFDVVVAKNYLSDNELAQLQRLVSAYLDMAEDMAERQIPMTMAD
                     WETRLNRFLAATDREILQDAGKVTAEIAKSFALSEFEKYRVKQDLTYESDFDLLVKEV
                     AAKYHAG"
     gene            complement(6023..8347)
                     /gene="pflB"
                     /locus_tag="PXE26_001876"
     CDS             complement(6023..8347)
                     /gene="pflB"
                     /locus_tag="PXE26_001876"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HDL5594439.1"
                     /translation="MTQLTDAQQKAWEGFAAGEWQTEVNVRDFIQKNYTPYEGDESFL
                     AEVTPATSKLWADVMEMIKVENKTHEPYDIDCDTPSTITSHAPGYIDKSLEKIVGLQT
                     DAPLKRAIMPFGGINMVKGSCKVYRRELKPEVEQIFTEYRKTHNQGVFDVYTPDILRC
                     RKSGVITGLPDAYGRGRIIGDYRRMALYGADFLMKDKQRQFASLQARLESGEDIQATI
                     QLREEIAEQHRALGKMKEMAASYGFDISGPATNAQEAVQWTYFAYLAAVKSQNGAAMS
                     FGRVSSFLDIYIERDLKAGKITEQEAQELIDHLVMKLRMVRFLRTPEYDQLFSGDPMW
                     ATETLAGMGLDGRTLVTKNSFRILHTLYTMGPSPEPNLTILWSEQLPEAFKRYCAKVS
                     IDTSSVQYENDDLMRPDFQNDDYAIACCVSPMIVGKMMQFFGARANLAKTLLYAINGG
                     VDEKSGDQVGPKTEAITSEYLDYDDVMTRLDSFMDWLATQYVTALNIIHFMHDKYAYE
                     AALMALHDRDVFRTMACGIAGLSVAADSLSAIKYAKVKPIRTDIEIKNKAGEVVGVAK
                     NVATDFEIEGEYPQFGNNDNRVDDIAVDLVERFMKKIQKLKTYRNATPTQSVLTITSN
                     VVYGKKTGNTPDGRRSGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTF
                     SIVPNALGKDYEAQKRNLAGLMDGYFHHEATVEGGQHLNVNVLNRDTLLDAVEHPEKY
                     PQLTIRVSGYAVRFNSLTKEQQMDVITRTFTESM"
     gene            complement(8437..9261)
                     /gene="focA"
                     /locus_tag="PXE26_001877"
     CDS             complement(8437..9261)
                     /gene="focA"
                     /locus_tag="PXE26_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter FocA"
                     /protein_id="HDL5594440.1"
                     /translation="MFSPAEMAKIAEDGAVYKATKNQLYSFLSAITAGGFIAIAFVFY
                     TTTQVGASQMPWGMAKLIGGLVFSLGVIMCVVFGAELFTSSTLTIVARASQRINWLQM
                     FKNWVVVYFGNFVGAISIVLLIWFSGQIMAAKGQWGLVILNTAQHKIHHQWFEAFCLG
                     IFCNIMVCIAVWMSYAGKSLTDKAFIMMLPIAMFVASGFEHCVANMFMIPMGIAISHF
                     ASPEFWTAINVDPTQFADLDVSHFVFKNLIPATLGNIVGGVFFIGLMQWFLYIRKH"
BASE COUNT         2623 a         2110 c         1841 g         2763 t
ORIGIN      
        1 gcaaccacta ttaggagtta aatatgtttc cagaatttcg tgatctcata acccaattaa
       61 agcaaaacaa ttcacatttt gctcgcttat ttgataaaca taatgagcta gaccagcgta
      121 ttaagaatat ggaggcaaat attgaactgg caacacatga agaagttgag gcactaaaaa
      181 aagaaaaatt gcatttaaaa gaccaacttt atgcaattct aaaacaagaa tcggcttaac
      241 ctaaagtaaa agctcagaaa atattctgag ctttaatttc ggtcatatta gacaatatta
      301 cagttttacc ggctcaataa tttcgcttgg gtagcaaccc aacactttga ggtagctggt
      361 aacttgctcc aattccgcca atgctttttg ggtgttctcg gaatgaatat ttgcctccag
      421 ctccacataa aacatctctt cccaaggttt gccgtaaatc gggcgggatt ccagtttcat
      481 catacgaata tgatgatttt tgaataccat taacgcatcg accaatgcac ccgcctgttg
      541 cgtggtggtc attaacagta acgttttggt ttgtacctgt ggcgaaacct gcacagcctc
      601 tttggcaaca acaataaaac gggtgatatt gtgagcttga ttagcaatat cggttttgat
      661 attcgtcaag ccatacaatt ttccgccatc ttcattgccc aaggcaacaa tattcggctt
      721 attcaagcga gccaccattt gcattgcgtg cgagctgctt tcgcaatatt tgatatgtac
      781 tttatctagc ccggctaaaa attggctaca ttgctgggca ggctgagggt gggtgtaaat
      841 ggtatccacc tccgccaaat caaccgtgcc gtttgccaat acacaatgtt tgattgggta
      901 cgccaattca cccactaagg ttaaatcggt atgctgcaat aaatcataca cttcattgat
      961 cgaacctgaa gtcgtgtttt caagcggcag tacgccaaaa tcggcttcac caaggctgac
     1021 tttctcaaat acttcattaa aagaatggca gcttaattcc gccaatgtgc cttgatattt
     1081 tttggcaaac tgtcgagatg ccatattaga ataagagcct cgcattccca aaaacgcaat
     1141 cgaaacctgc tcttcttttt gtgcattcaa tttattttgc agataatttt gctgagtcag
     1201 cactgaatct tcaataatac gttggaaaat ttgggtcaca tattgcggat caagctggta
     1261 attctccgct tcggcaaaat ttaccagttc ttgaagcaaa atcttttccc gttctaaatc
     1321 tctcaagggt ttttgtgtga tttctttgct ccgcaccaca tcaaaggcta agcggtggcg
     1381 ttctgccagt agctttaata aattgcggtc taagttggtt atttgggttc gaatatcggc
     1441 taaatctaaa gacattattt cactctctgt caggctaaat gctgaaaatt ataacgagtt
     1501 gcaaaagaaa gaaaagacaa gcggtcaaat ttacaaaaaa atttgcaaat ctaaccgctt
     1561 gtaaaacgtg tttactttat tgagtgcaat caacaggctc ggcattacct acaatgcctt
     1621 tgtgtctgag caaggcatca agggttggct tacgcccacg gaagcgttcg aacagcacca
     1681 ttggctcttc tgaaccgcct cgggttaaga tattatctaa gaaagactgc cccgtttcag
     1741 ggttgaaaat cccctcttcc tcaaagcgtg aataggcatc tgctgaaagc acttccgccc
     1801 ataaataact gtagtagccc gccgcatagc cgcctgcaaa aatatgcgag aaactgtgtg
     1861 gcgttctcgc ccactctacg cctttggcaa cagcgacttg gtctttcacc tctttaagta
     1921 aggctaacac ttgtccttgt ttgctcgggt catattcggt gtgtaggcgg aaatcaaaca
     1981 agccaaattc taattggcga agcacaaaca ttgccgcttg gaagtttttc gccgccaata
     2041 attgctctaa tttcgctttt ggtaacggct cgccggtttc ataatgccct gaaataaagg
     2101 ctaatgcctc ttcttcccag caccagttct ctaagaattg gcttggcagc tccactgcgt
     2161 cccacggcac accgttaatg ccggcgacat cgcccacgtc aatttcagtt agcatatggt
     2221 gaatgccgtg tccaaactcg tggaacaaag ttgtcacttc atcgtgggta aacaatgccg
     2281 gtttatcgcc aatcggttta ttgaagttac aggttaaata tgccaccggt ttttgtaatg
     2341 tgccgtcagc caagcgtttt tggttgatgc aatcatccat ccacgcccca ccacgtttgt
     2401 tttcacgagc gtataaatct aagtagaacg agccacgcaa gcggtcattt ttatcaaaaa
     2461 tattgaaaaa acgtacatct ttgtgccata catccacatc tttttgttct tccacacgca
     2521 taccgaaaat gcgtttaatt acttcaaata agcctgataa tacgcgattt tccgggaaat
     2581 acgggcgaag ttcttcatca ttgaccgaat acaatgcctg tttttgtttt tcgctgtaga
     2641 acggaatatc ccataaatcc aaatgttcaa tgccgaaatg ggctttagca aattttttca
     2701 aatcgcataa ttcatttttg ccttgagctt tcgagcgagc ggctaaatcg ttcaagaaat
     2761 ctaatacctg ttgtggattt tctgccattt tggtggctaa tgaataatca gaataagtct
     2821 taaagccgag aagttgggct ttttcgtgac gcagttttaa gatctcatca atcaccgcac
     2881 tgttatccca tttgcctgca ttcgggcctt gatcagaagc acgagtcaca taagcacggt
     2941 acatttcctc acgcagtgct ttgttttcac aatacgtcat caccggcaaa tagcttggga
     3001 tttcaagagt gaagcgatag cctttcttac ctttgctttc tgcggataat tttgccgctt
     3061 ctaatgccga ttccggcaag cctttaagct gtgcttcatc ggtaattaca atatcccaac
     3121 ccattgttgc atcaagtacg ttgttgctaa attgcgagtt gagttccgac aagcgtgcag
     3181 aaatttcccc gtagcgtttt tgtttctctg ccggcagtga aatgcctgat aattcaaaat
     3241 cttgtaagct gttttcaatc gcctttttct gtgcaaccga ataagtttca aactcagggc
     3301 tgttttttaa cttcacatag ccttgatata acccttgatg ttgccccgcc caagtgctgt
     3361 attccgataa taacggcaag cacgcttggt aagcctcacg caactctggg gaatttttca
     3421 ccgcattcaa atgccctacc ggtgaccacg cacgggagaa tttatcctct gccattgctt
     3481 gtggcatata gaaattttcc cacgtcgggt tttcaatttg tgcgactttt tcaacagttt
     3541 cacggcattc tttgatcacc gcttctaccg ccggtttgat atgttcaggt ttgatttgtg
     3601 agaacgcagg caagcctgtg taatttaaaa gagggttaga cattattttt tccttttatg
     3661 gtcaaaatga aaattcgtat caagataata cacaaagtga gagagaaaag aaaacaagcg
     3721 gtcatatttc aataattttt tgcaaaaaaa tcacaaaata tgaccgcttg tctttagaat
     3781 ttgactgtat gcccgtaact ttcaatgatt ttttggatac gctctaaatc ctctttaggc
     3841 ggtgacatta ccccttccag ctcatattta tagcctaagg tttcccattt gtgagcccct
     3901 aaacgatgat aaggcagaag ttccactttc tcaatgttat ccattccttg aataaactgc
     3961 cctaaacgat gggcagaatc atcgtcatca gtataacccg gcacgaccac atagcgaacc
     4021 caagtcggtt tatttaattt gtgcagataa cgggcgaaat caagggtacg cttattcgac
     4081 accccgacta aatcttggtg aacttcatca ttgagctgtt ttaaatccag caagaccaaa
     4141 tcggtcactt caagcatttc atccaccacc gggctataat ggcgaacaaa accattggta
     4201 tctaagcagg tattaatgcc ttcagcctta caggcacgaa accaatcccg cacaaactcc
     4261 atttgcaaca ccgcttcccc acccgaagct gttacaccac cgccggttgc tttcataaaa
     4321 tgcttataag tcgtgacttc tttcatcagc tcttcaaccg taatttcctt accaccatca
     4381 agatcccaag tatcacgatt atggcaatat ttacaccgca tcaaacagcc ttgcaagaac
     4441 agaataaaac gaatccccgg tccatctacc gtaccgcagg attcaaaaga atggatacgt
     4501 ccaacaacag acatttgtca cctcaaccct caaaaaattt tgagaaattg tagcaaattt
     4561 ttatgttgtt cgcagaaata aatcacaccg gtatatttta agaaaggaga aagtcatact
     4621 attttttgcc tatttcagga ataaactttt attaatctat tgactccatc aacatatcaa
     4681 ccaaatatgt ttaaattttt gcatttttta aagctatttt gaccgcttac aagcagtcgg
     4741 tttttctgaa aactttgcaa acctagccgg cgtggtattt ggcggcgacc tcttttacca
     4801 gtaagtcgaa atcgctttcg taggtgagat cctgcttgac tcggtatttt tcaaattcgc
     4861 tgagggcgaa agatttagca atttcagcgg taactttgcc ggcatcttgt aagatttctc
     4921 ggtcggtggc ggcaagaaag cggttaaggc gggtttccca gtctgccatt gtcatcggaa
     4981 tttggcgttc tgccatatct tccgccatat ccaaataggc agagaccagc cgttgtagtt
     5041 gtgctaattc attatccgat aaataatttt tggcaaccac cacatcaaag gggtaaattt
     5101 tgccttgcgg agcgtctttc caattcgtta gccccatatt cggcttttca gcgttggctc
     5161 gtgccataat cagctcggcg gcggtatgcc cgtgaattgc ccaatggagc ttgttctgca
     5221 cggtggcaaa aaagcgtttg gtggcggttg cggtgcggtc gtagtccacg gcggtagcgt
     5281 aaatgtcggt gattttttgg tagaacttgc gttcggataa ccgaatttcc cgaatacgag
     5341 caagctgttc ttcaaagtat tttttgccca aaatcgtgcc gtcatttttc agccgttcat
     5401 cgtccatcgc aaagccttta atcgcaaagc tatgcacgat ttcggttgcc catttgcgaa
     5461 actgcaccgc tcgctcggaa ttgactttat aacccaccgc aataattgcc gacagattat
     5521 aatgcttggt gtggtagttt ttgccgtctt gggcagttat ccaaaaaaat tggataactg
     5581 aattttcagc taactcattg tcactaaaga tttttttgag atgatagcta atggttcgta
     5641 catcaacatc atacaacacc gccatcattt tttggctaag ccatacattt tcatcggcgt
     5701 aaacggcatc aacttggctt tcgccggtag ctgtaataaa agtgaggtat tccgccacag
     5761 aggaacgaat taaatcttgc ttagacatct ctttctccca tatagaacac tgtaattata
     5821 aacaatatta cgaaagctgt gtaaatgaat agccaatttt tcgagcgaga tcacaaaaaa
     5881 accgcttgcg gcataaatgc tacaagcggt tgattattac tcacaaaatt gtttccaatt
     5941 ttgttcgctc ctacggagcc gtcggcaaag ccaacgttca aaacgcaatg cgttttgtgg
     6001 ctaaaagttt tgcaaattgt aattacatac tttcagtgaa ggtgcgggta attacgtcca
     6061 tttgttgctc tttggttaaa gagttgaaac gtaccgcata gcctgaaaca cgaatcgtta
     6121 attgcggata tttttcaggg tgttctaccg catctaataa tgtatcacgg tttaacacgt
     6181 tcacatttaa gtgctgaccg ccttctacag ttgcttcgtg gtggaagtag ccgtccatta
     6241 agcctgcaag gttacgtttt tgggcttcgt aatctttacc taacgcattt ggtacgatag
     6301 agaaagtata agaaatacca tctttcgcat aggcaaacgg taatttcgcc acagaagtta
     6361 atgaagctac cgcacctttc tggtcacgac cgtgcattgg gttcgcaccc ggtccgaatg
     6421 gagcacctga gcgacgaccg tccggtgtat taccggtttt cttaccatat accacgttag
     6481 aagtgatagt aagcacagac tgagtcggcg ttgcattgcg gtatgttttg agtttttgaa
     6541 ttttcttcat aaaacgttca actaaatcaa ctgcaatgtc gtccacacgg ttatcgttgt
     6601 taccgaattg cggatattca ccctcaattt caaagtcggt tgctacgttt ttcgctacac
     6661 caaccacttc gccagctttg tttttgattt caatatcggt acggattggt tttactttcg
     6721 catatttaat ggctgaaagt gagtctgccg ctactgaaag ccctgcgata ccacacgcca
     6781 ttgtgcggaa cacatcacgg tcgtgaagag ccattaatgc cgcttcgtat gcatatttat
     6841 cgtgcataaa gtggataatg ttcagtgctg tcacatattg ggttgcaagc caatccataa
     6901 agctgtctaa gcgggtcatt acatcatcgt aatctaagta ttcacttgta attgcttcag
     6961 ttttaggccc tacttggtcg cctgatttct catcaacacc gccattgatt gcgtataaca
     7021 aggttttcgc taagtttgca cgagcgccga agaactgcat cattttaccc acgatcattg
     7081 gcgatacgca gcacgcaatc gcatagtcat cgttttggaa atccggacgc attaagtcat
     7141 cgttttcata ttgaactgat gaagtatcaa tagacacttt cgcacagtag cgtttaaatg
     7201 cttccggtaa ttgttcagac caaagaatag ttaagtttgg ctccggtgac ggccccattg
     7261 tgtaaagggt gtgtaaaata cggaagctgt ttttggttac taaggtacga ccgtctaaac
     7321 ccataccggc taaggtttcg gttgcccaca ttgggtcgcc tgagaataat tgatcgtatt
     7381 ccggagtacg caagaaacgc accatacgca atttcattac taaatggtcg attaactctt
     7441 gggcttcttg ctcggtaatt ttgccggctt ttaagtcacg ttcgatataa atatctaaga
     7501 atgaagacac acgaccgaaa gacatcgccg caccgttttg cgatttaacc gctgcaaggt
     7561 aagcgaaata tgtccattgc accgcttctt gtgcattggt tgcaggacct gaaatatcaa
     7621 aaccgtagct tgcagccatc tctttcattt tgcctaaagc acggtgttgc tcggcaattt
     7681 cttcacgcag ttgaatcgtg gcttgaatat cttcgccgga ttctaaacga gcttgtaatg
     7741 aggcaaactg gcgttgtttg tctttcatta agaagtctgc accataaagt gccatacggc
     7801 ggtagtcacc gataatacga ccacgaccat aagcatccgg caaaccggta attacacctg
     7861 atttacggca acgtaaaata tccggagtgt aaacatcgaa taccccttgg ttatgggttt
     7921 tacggtattc ggtaaagatt tgttctactt caggtttaag ctcacggcga taaactttgc
     7981 acgaaccttt caccatattg ataccaccaa acggcataat cgcacgtttt aatggagcat
     8041 ctgtttgcag accaacgatt ttttctaacg atttatcaat ataacccggt gcgtgtgagg
     8101 taatggttga tggcgtgtcg cagtcaatat catacggttc gtgtgttttg ttttctactt
     8161 tgatcatttc catcacatct gcccacaatt tgctggttgc aggtgttact tcagctagga
     8221 aagactcatc accctcataa ggtgtgtagt ttttttggat aaaatcacgt acatttactt
     8281 cagtttgcca ctcgcctgcg gcaaaacctt cccacgcttt ttgttgagcg tctgttagtt
     8341 gagtcatttt aagtcctctg tgttagtaag ttaaaacggg aaagcggtga ttttttgcaa
     8401 aaaatttgca aaatttgacc gcttgaatct gaaatcttaa tgctttctaa tgtataagaa
     8461 ccactgcatt aaaccaatga aaaacacgcc accgacaata ttacccagcg ttgccggaat
     8521 taagttctta aacacaaaat gagatacatc taaatcggca aattgcgttg ggtcaacatt
     8581 aattgctgtc caaaattcag ggctggcaaa gtgcgaaatc gcaatcccca tcggaatcat
     8641 aaacatattt gccacacagt gttcaaagcc ggaagccaca aacattgcaa tcggtaacat
     8701 cataataaag gctttatcgg ttaggctttt acctgcataa gacatccaca ccgcaatgca
     8761 caccataatg ttacagaaaa tgcctaaaca gaaagcctca aaccattggt ggtgaatttt
     8821 gtgctgtgcg gtatttaaaa taaccaaacc ccattgccct ttggctgcca taatctgacc
     8881 actaaaccaa atcaacaata caatggaaat cgccccaaca aagttaccga aatacaccac
     8941 tacccagttt ttaaacatct gtaaccagtt aattctttgg ctggctctgg ctacaatcgt
     9001 aagtgttgat gaggtaaaaa gttctgcccc aaacaccaca cacataatca cgccgagtga
     9061 aaataccaaa ccaccaatca gtttagccat accccaaggc atttggctcg cacccacttg
     9121 ggttgtggta taaaatacaa atgctattgc aataaaaccg cccgcagtaa tggcagagag
     9181 aaaggaatat aattgatttt ttgttgcttt ataaaccgca ccatcttctg cgatttttgc
     9241 catttcagca ggagaaaaca tcagacaacc ttaacaatga gaattgaaaa accgatatat
     9301 tatgtagaaa ttatagacct cttgagataa tcttcaa
//
LOCUS       DANLZD010000106         9004 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.106, whole genome shotgun sequence.
ACCESSION   DANLZD010000106 DANLZD010000000
VERSION     DANLZD010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9004)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9004)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9004
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.106"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            54..3212
                     /locus_tag="PXE26_001878"
     CDS             54..3212
                     /locus_tag="PXE26_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HDL5594441.1"
                     /translation="MITINENTIEQSAIATLQSLGWDYTYGKKILAGLEHEWRERTAE
                     VILKPLLAQAIAKFNPNLPACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKITYQ
                     LYGEQVSDVVQLIDFQRPENNDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKN
                     PLKENADIGKAFAQLQTYKDEISDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVV
                     DEKNQSKRIVFEDELTALLQGVMTPKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYG
                     VNEAVDCTLLAATGNRKIGVFWHTQGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRN
                     DLDGQLYATFCGGEALLKQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELA
                     HPVLNERENIIVITDEAHRSQYGFSQKINHKGEYREGYAKHLRSALPNASFIGFTGTP
                     IELDDKDTQEVFGKYVSIYDFEDAVEDGATVPIIYEPRQISLGESGEFSKVMEEAQQL
                     IDDDENSYNFRLREKLHSVDSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKL
                     YEKITALRPEWHSNDVLQGSIKIVMTSNASDPAEWQKHNQDKKTLEKRFKDPDDPLNI
                     VIVRDMWLTGFDAPCCNTMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGL
                     TDELEKAMKQYTNAGGKEKPVRDISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQ
                     ISEPPKLLNAILTSANHILALDRIQPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGAL
                     KAVEPYKQELAFYDAVRATIIKNSTAPRNSSSENDRLLQLTALMNRAVQSDGVVDLFD
                     LLKKDRPNINLLSDEFLETVKNSPTKDLWLSAMERYLASQLREQSGANLATKKAFEQK
                     LKEAMNQYHNHNLSVLEILEELIALAKEFEARQKRGEALGLSPAEMAFYDALARNESA
                     VREMGDEVLMKLAKDITDKLRKSVTVDWQYKDSVRAKMRTLIRIALRTYKYPPDLQAE
                     AIEFVLQQAEEIAGEFAITETA"
     gene            complement(3246..6137)
                     /gene="glnE"
                     /locus_tag="PXE26_001879"
     CDS             complement(3246..6137)
                     /gene="glnE"
                     /locus_tag="PXE26_001879"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HDL5594442.1"
                     /translation="MLTTLIPLSQLNLPPNLQNSEQIQPLVTAISLSNFVHQTLQKQP
                     DLLAEWLAKFPTPDDCCNYTERLAKILARVENEEMLGRVLRQFRHRELARLSFIQSNK
                     LATVELVFQHLSDLAESLILAARDWLFQRCCAEYGTPKNTLGETQELLILGMGKLGGR
                     ELNFSSDIDLIFTYPDIGETEGGRKSIENSKFFTRMGQRLIKVLDEITADGFVYRTDM
                     RLRPFGDSGALVLSFTAMEDYYQEQGRDWERYAMIKAKILGEDSQNLNHRYLKQMLRP
                     FVYRRYLDFSAIQSLREMKEKISREVVRRNLTDNIKFGAGGIREVEFIAQTFQMIRGG
                     RDKILQERSLLKVLPRLAELNLLTQTQVETLHNAYIFYRQIENVLQAIDDKQTQTLPT
                     DEASQARLVFACQSYYQQDLYSEKTHWVEHSFNDWQQFMAVLSQYQQAVRQIFNEIIG
                     EEETQANCNPVNEKLAEWKDILHYNIRLEDLSAVLKGYPKVAENDYTEIFRHFSTTFQ
                     DWVKRPIGVRGREVLRNLMPRIADSIFKGEDHLLLLPRVLNIVDKITTRTTYLELMLE
                     KEQILPQLLALCSKSVMIAEQIARYPMLLDELMSHRGLTDVQAFEKYQSALQDYLIRI
                     PEEDEEALIDGLRQFKQTQILRIAAADILGVLLVMKISDHLTYLAEAIINAVVNMAWK
                     QVSQRFGVPEHLEADEKGFAVIGYGKLGGIELGYNSDLDLVFLHNAPEDSQTVGGKKE
                     ISSHQFYLKLAQKINSIFNLNTSAGVLYEVDMRLRPSGEAGLLVSTFNAYEHYQKNEA
                     WTWESQALVRTRCVFGAENLKQAFEKIRQSTLAQPRASGQLRQEICEMRQKMYQHLSS
                     HSAEQFHIKQDQGGITDIEFIAQYLVLAHSHQHPKMAVWSDNVRIFDSAVECGILSSE
                     QSEQLQHCYTALRNKIHHLNLLRKDSVVDASEFTTERAFVREMWQRLLA"
     gene            complement(6309..6590)
                     /locus_tag="PXE26_001880"
     CDS             complement(6309..6590)
                     /locus_tag="PXE26_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HDL5594443.1"
                     /translation="MYYVIFAQDNPNMLEKRLEVRPAHLARLEKLQAEGRLLIAGPNP
                     TEDGSSVTGSTVIAEFNSLEEAQQWASQDPYVEAGVYSDVIIKPFKRVF"
     gene            complement(6592..7056)
                     /gene="yciA"
                     /locus_tag="PXE26_001881"
     CDS             complement(6592..7056)
                     /gene="yciA"
                     /locus_tag="PXE26_001881"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HDL5594444.1"
                     /translation="MKDKPYGKAPEGKLILRTLAMPSDTNANGDIFGGWIMSQMDLGG
                     AILAKELAKGRVVTVTVDKMIFHRPISVGDVVCCYGKLMHIGRSSMQVKVEVFIKQVY
                     EGNRERYLVTEALFTYVAIDKEGKPRAVPRENNPELDEALSLIDLTPEKQGE"
     gene            complement(7046..7603)
                     /locus_tag="PXE26_001882"
     CDS             complement(7046..7603)
                     /locus_tag="PXE26_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HDL5594445.1"
                     /translation="MKQLLEFIPLILFFVVYKMSGIQMASIALVIATIVQMIALKMLY
                     GKIEKQQIIMGGSVVFFGLLSAYFNEVKYLQWKVTIVYALFALVLLVSQFVFKTPLIK
                     KLLGKEIQLPEAVWNKINFGWAVFFLICMLLNIYISQYLSEEIWVDFKSFGIIGLTLV
                     ATVITGFVLYPYLKDAEKQEQKNER"
     gene            complement(7612..8421)
                     /locus_tag="PXE26_001883"
     CDS             complement(7612..8421)
                     /locus_tag="PXE26_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5594446.1"
                     /translation="MAQALLYFTTKYLQSIEGYFMSIKFVDLLQQSWNFMRNQQAFSL
                     FAIVTIVVVQLVFILVSPNSPELMAESQPQQLQIDASKMVSILLPTILLGVVNLLINV
                     LMIFNIQSINDGNYRQFFQNAGNALKHFLPVLLLQFVMVLPLSLGASFAMASPETVII
                     ALPVLVVGFYFFIKLSLVIYAYLLEKPQKSLSESIKFTLQLSRGKMLPLILFCVISYL
                     LPGMLSRLFTVFGNDFIGIFITIVLSAVINVFMAIFSFRFYQVYRQMPAVR"
     gene            8492..8929
                     /locus_tag="PXE26_001884"
     CDS             8492..8929
                     /locus_tag="PXE26_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF412 domain-containing protein"
                     /protein_id="HDL5594447.1"
                     /translation="MLSLFDAGQRYLNTLPNQKKLANFMPDYHIIRLVKFSSKVMPAF
                     ACFALVWQYCFTDPTQSILANSVLTAVFAISIPFQGLYWLGKRARSPLSLSLLEWYES
                     LRQKLISAQVKLEETQAVPSFQDFANLLKLAEETWGDEYFDEL"
BASE COUNT         2668 a         1929 c         1909 g         2498 t
ORIGIN      
        1 aaaattagag ataagttatt acctaaatta ttaagtgggg agatggagtt gtgatgatta
       61 ccatcaacga aaacaccatt gaacaatccg ccattgcaac tttgcaaagc ttgggctggg
      121 actacaccta cggcaaaaaa attttggcag gtttagaaca cgaatggcgg gagcgaaccg
      181 ctgaggtgat tttaaagccg cttttggcgc aagcgattgc aaaattcaac ccgaatttgc
      241 ccgcttgtga ggtggaaaat gtggtggcac aggtgtgccg tgccgacagt ggcgatttgg
      301 cggagcgtaa tcgtcaggct tatgattggc taagaaatgg ggtcaaaatc acttatcagt
      361 tgtacggtga gcaggtgtct gatgtggtgc agctgattga ttttcagcgt ccagaaaata
      421 acgattttcg cattgtcaat cagctggata ttagcggcaa aaaaggcaaa cgcattccgg
      481 atttgattgg ctttgttaat ggcttgccgc tggtggtgtt tgagctgaaa aatccgctca
      541 aagaaaatgc cgacattggc aaggcgtttg cccaactgca aacctataaa gatgaaattt
      601 ctgatttgtt tgtgtttaat caggcactcg tgatttcaga cggcattgtc gcccgcatcg
      661 gttcgctgac cgctgatttc gaccgtttta ccccttggcg tgtggttgat gaaaaaaatc
      721 agagcaaacg cattgtgttt gaagatgaac tcaccgccct gctgcaaggc gtgatgacac
      781 ccaaaaatct cttggattat gtgcagaatt ttgtggtgtt tgaacgggac ggcaaaaacc
      841 gcttaattaa gaaaatcgga gcatatcatc agttttatgg cgtgaatgaa gcggtggatt
      901 gcaccttgct tgccgccaca ggcaaccgca aaatcggcgt gttttggcat acgcaaggtt
      961 cgggcaaatc gctttcgatg ctgttttatg caggtaaagt attaagccaa agcagcctga
     1021 aaaatccaac tttggtgttg gtaaccgacc gcaacgattt ggacggtcag ctttacgcca
     1081 ctttttgcgg tggcgaggca ctgctcaaac aaacgccaat ccaagccgat gggcgagacg
     1141 aactccgctc tgcccttgcc agtcgttcgg caggcggtgt gatttttacc accattcaaa
     1201 aattcggctt aatggagggt gagcttgccc accctgtatt aaacgagcgg gaaaacatca
     1261 ttgtgattac cgatgaagca caccgctcac aatatggttt tagccaaaaa atcaaccaca
     1321 aaggcgagta tcgtgagggt tatgccaagc atttacgcag tgcattgccg aatgcctctt
     1381 ttattggctt tactggcaca ccgattgaac ttgatgacaa agacacccaa gaagtcttcg
     1441 gtaaatatgt ctcgatttat gattttgaag atgcggtgga agatggggca accgtgccga
     1501 ttatttatga gccacgccaa atcagcttag gcgaaagtgg cgagttttcc aaagtgatgg
     1561 aagaggcaca acaactgatt gatgacgatg aaaacagcta taacttccgc ctgcgtgaaa
     1621 aactgcacag cgtggatagc cgtttgcaaa aaatggcgga agatattatt gcccattacg
     1681 atgagcgtac caaacagcaa gacggcaagg cgatggttgt ggtgatgagc cgtgccattt
     1741 gcgtgaaatt gtacgaaaaa atcaccgcac ttcgtccaga atggcactca aacgatgtgc
     1801 ttcaaggcag cattaaaatt gtgatgacaa gtaatgccag cgaccctgcc gagtggcaaa
     1861 aacacaatca ggataagaaa accttagaaa aacgctttaa agacccagac gatccgctca
     1921 acatcgtgat tgtgcgggat atgtggctga caggctttga tgcgccctgc tgtaacacaa
     1981 tgtacattga taaaccaatg agcggacaca acctgatgca ggcaatcgct cgggtaaatc
     2041 gggtatttcg caacaaaagc cgtgaaaatg gcggcttgat tgtggattat gtgggcttga
     2101 ccgatgagct ggaaaaagcg atgaagcagt acaccaacgc aggcggtaaa gaaaagccgg
     2161 tgcgggacat ttcagcggtg ctggaaaaaa tggtggaaca tatcacggtc attcgtgggc
     2221 aatttgccac accgattgac ggacaagcgg ttgatattgc caaaatgttg caaatcagcg
     2281 aaccgcctaa actgctcaat gcgattttga catcagccaa ccatattctt gccctagacc
     2341 gcattcagcc acctgataac actgccaaag acaaaacccc acgcaaaaac gcctttttgc
     2401 aatcggtacg cttggcgaaa aaaggttatg ctttgtgtgg ggcattaaaa gcagttgaac
     2461 cctataaaca ggaactggcg ttttatgatg cagtgcgtgc caccattatc aaaaacagca
     2521 ccgctcctcg caattcttcg agcgaaaatg accgcttgtt gcagcttacc gccttgatga
     2581 atcgtgcggt acagtcggat ggtgtggtgg atttatttga tttgctgaaa aaagaccgcc
     2641 caaacatcaa cctgctttct gatgagtttt tggaaacagt aaaaaacagc ccaaccaaag
     2701 atttgtggct atcagcaatg gagcgttatc ttgcctcaca actgcgagag caaagcggtg
     2761 ccaatcttgc cacaaaaaaa gcatttgaac agaaactcaa agaggcgatg aaccaatacc
     2821 acaaccacaa tttaagcgta ttggaaattt tagaagagct gatcgccctc gccaaagagt
     2881 ttgaagcccg ccaaaaacga ggggaagcgt tgggactaag ccctgcggaa atggcgtttt
     2941 atgatgcttt ggcacgtaat gaaagtgcgg tgcgggaaat gggcgatgag gtattgatga
     3001 aacttgccaa agacattacc gataaattac gcaaatcggt caccgtagat tggcaatata
     3061 aagactcggt tcgtgccaaa atgcgaacct taatccgcat tgctctgcgt acctataaat
     3121 acccgcccga tttacaggcg gaagcgattg agtttgtgtt gcaacaagcg gaagagatcg
     3181 ccggagagtt cgctatcacc gaaacggcgt aatctatatt agggcgtgca atgtacgccc
     3241 taaatttatg ctaataacct ctgccacatt tcccgcacaa atgctcgctc ggtggtaaat
     3301 tcacttgcgt ccaccacgct gtctttgcgt aataagttta ggtggtggat tttgttacgc
     3361 agtgcggtgt agcaatgttg tagctgttcg ctttgttcgg aacttaaaat accgcattct
     3421 actgcgctgt cgaaaattcg gacattatcc gaccatactg ccattttcgg gtgttggtgg
     3481 ctgtgggcta ataccaaata ttgggcgata aattcaatat cggtaatacc tccttgatct
     3541 tgtttaatat gaaattgctc ggctgaatgc gagcttaaat gttggtacat tttctgtcgc
     3601 atttcgcaaa tttcttggcg taattgaccg cttgcacgag gctgagcaag cgtgctttgg
     3661 cggatttttt caaaggcttg tttgaggttt tccgccccaa atacacatct tgtccgcacg
     3721 agggcttggc tttcccacgt ccacgcttca tttttttgat aatgctcgta ggcattgaaa
     3781 gtgctgacta aaagcccagc ctcgcctgat gggcgaagtc gcatatccac ttcatatagt
     3841 acgccggcac tggtattaag gttaaaaatc gagttaattt tttgagccaa ttttaagtaa
     3901 aattgatggc ttgaaatctc ttttttaccg ccaacagttt ggctatcctc tggggcatta
     3961 tgcaagaaaa ccaagtcgag atctgaatta tagcccagtt caatcccgcc tagcttgccg
     4021 tagccaataa ctgcaaaccc tttttcatca gcctctaaat gttccggcac accaaagcgt
     4081 tggctgactt gcttccacgc catatttacc accgcattaa taatcgcttc tgctaagtaa
     4141 gtaagatgat cgctgatctt cattaccagc agcacgccta aaatatcagc agcggcgatg
     4201 cgtaaaattt gggtttgttt gaactgacgt aagccatcaa tcagtgcttc ttcatcttct
     4261 tcaggaatgc ggattaaata atcctgcaag gcagattgat atttttcaaa agcctgcacg
     4321 tcggttaagc ctctatggct catcagctca tcaagtagca ttggatatcg agctatctgt
     4381 tccgcaatca taaccgactt actacacaat gctaaaagtt gaggcagaat ctgctctttt
     4441 tcgagcatta attccaaata ggtagttcgg gtggtgattt tatcgacaat attcaacacg
     4501 cgaggcaata acaataaatg atcttcacct ttaaaaatgc tgtcggcaat tctaggcatt
     4561 aaattgcgta gcacctctcg ccctcttacc ccaatcgggc gttttaccca atcttgaaag
     4621 gtagtagaaa agtgacggaa aatctccgta taatcatttt ctgcaacctt tggataacct
     4681 tttagcactg cggataaatc ttcaaggcga atgttatagt gcaaaatgtc tttccattcg
     4741 gctaattttt cattaaccgg attgcagttg gcttgtgttt cctcttcacc gataatttca
     4801 ttaaaaatct ggcgtactgc ttgttgatat tggctcaata ctgccataaa ttgttgccaa
     4861 tcgttaaagg aatgctccac ccaatgcgtt ttttcgctat atagatcttg ctgataatag
     4921 ctttggcaag caaatacaag gcgggcttgc gaggcttcat cagtgggtag ggtttgagtt
     4981 tgtttatcgt caatcgcttg taatacattt tcaatttgac ggtaaaaaat ataggcattg
     5041 tggagcgttt ccacctgcgt ttgggttaat aaatttaatt ctgccaagcg tggtagcact
     5101 tttaacaggc tacgttcttg taaaatttta tctcgcccgc cacggatcat ttggaaagtt
     5161 tgggcgataa actccacttc ccgaatccca ccggcaccaa atttaatatt atcggttaaa
     5221 ttacggcgaa ccacttcacg gctgattttt tctttcattt cacgcaacga ttggattgca
     5281 ctgaaatcca gataacggcg gtaaacaaaa gggcggagca tttgctttaa atagcgatga
     5341 tttaaatttt ggctatcctc gcctaaaatt tttgctttaa tcatcgcata acgttcccaa
     5401 tcacgccctt gctcttggta ataatcttcc attgcagtaa aactcagcac caaggctccg
     5461 ctatcaccaa aggggcgaag tcgcatatcg gtacgataca cgaaaccatc agcggtgatc
     5521 tcatctaata ctttaattaa ccgctgcccc attcgggtaa aaaatttgct gttttcaatc
     5581 gatttgcgtc caccttcggt ttcaccaata tcggggtagg taaaaatcag gtcaatatcg
     5641 gaagaaaaat taagctctcg tccgcccaat ttgcccatac ctaaaatcag cagttcttgt
     5701 gtttcgccaa gagtgttctt tggcgtgcca tattcggcac agcaacgctg aaacaaccaa
     5761 tctcgagcgg ctagaatcag gctctcggct aaatccgaca aatgctgaaa taccaattct
     5821 accgtcgcta atttatttga ctgaataaag ctcagacgag ccaattcacg gtggcgaaat
     5881 tgccgcaaaa ccctccccaa catttcttca ttttccactc ttgctaatat ttttgctaaa
     5941 cgctcagtat aattgcagca atcatcaggc gtaggaaact tggcaagcca ttctgccagt
     6001 aaatccggct gtttttgcaa ggtttgatgc acgaaattgg aaagcgaaat cgccgtcaca
     6061 agcggttgaa tttgctcaga attttgcaaa ttgggcggta aattgagttg ggataaggga
     6121 attagggtgg taagcataaa tttaggctca aaattgaaaa tagatagaat tttacgctcg
     6181 atcaattccc ctctttagca aagagggctt aggggagatt tggcagaggt aattttactc
     6241 tcatacgaaa cattaatatc gtaatcaaat ctcccccagc ccctcttttc taaagagggg
     6301 agaaaaaatt aaaacactct tttaaacggt ttaataatca catcgctata cacaccggct
     6361 tccacataag gatcttggct tgcccattgt tgagcttctt caagtgagtt gaactctgca
     6421 attacagttg aaccggttac gcttgagccg tcttcagtcg ggttaggccc tgcgattaat
     6481 aatcgacctt ctgcctgtaa tttttccaaa cgagccaaat gagccgggcg aacttctaaa
     6541 cgtttttcca acatattggg attatcttgg gcaaagataa cataatacat actattctcc
     6601 ttgtttttca ggggttaaat caattagcga taatgcttcg tctaattcgg ggttattttc
     6661 tctcggcaca gcacgcggtt tgccttcttt atcaatcgct acataggtaa ataaggcttc
     6721 ggttacgaga taacgttcgc gattgccctc ataaacttgt ttgataaaga cctcgacttt
     6781 cacttgcatc gaagaacgcc ctatgtgcat taacttgccg tagcagcaga ccacatcacc
     6841 gactgaaatc gggcggtgga aaatcatttt atctaccgtt accgtaacga ctctaccttt
     6901 tgccaactct ttggctaaaa ttgcaccgcc taaatccatc tgcgacataa tccaaccgcc
     6961 gaaaatatcg ccattggcgt tagtatctga cggcattgcc aaagttctta aaatcagttt
     7021 cccttccggg gcttttccat agggtttatc tttcattttt ttgttcctgc ttttcagcat
     7081 cttttaagta agggtaaagg acgaaaccgg taataaccgt tgcgactaag gttaagccaa
     7141 taatgccaaa ggatttgaaa tcaacccaaa tctcttccga taaatattga ctgatataaa
     7201 tattcagcag catacaaatc agaaagaata ctgcccaacc gaagtttatt ttattccaca
     7261 ctgcttcagg caactgaatt tctttgccta ataatttttt gattaatggt gttttgaaca
     7321 caaattggct cactaatagc accaatgcaa acagagcgta aacaatggtt actttccatt
     7381 gtaaatattt aacttcatta aaataggcac tcagtaagcc gaaaaagacc accgagccac
     7441 ccataataat ttgctgtttt tcaattttgc cgtagagcat ttttaaggcg atcatttgca
     7501 cgattgtagc gataaccaat gcgatagacg ccatctgaat accgctcatt ttatacacga
     7561 caaaaaacag aatcagcgga ataaattcaa gtaactgttt cattgatact cctaacgcac
     7621 tgccggcatt tggcggtaaa cttggtaaaa gcggaagctg aaaatcgcca taaagacgtt
     7681 aattaccgca cttaaaacaa tggtaatgaa tatgccaata aagtcattac caaacactgt
     7741 gaacaaacga gataacatcc ccggtaataa ataagaaatc acacaaaata aaatcagcgg
     7801 tagcattttt ccacgtgata attgaagcgt aaatttaata ctttccgata gacttttctg
     7861 cggtttctcc aataaataag cataaatcac taacgataat ttgataaaaa aataaaaacc
     7921 gactaccaac accggcaatg caataatcac tgtttcaggc gatgccattg caaaagatgc
     7981 accgagagaa agcggtaaca ccatcacaaa ttgtaacaac agcacaggta ggaagtgctt
     8041 taatgcgttt cctgcatttt ggaaaaattg acgataattg ccatcgttaa tcgattggat
     8101 attgaaaatc attaagacat tgatcaaaag attgacaaca cctaataaaa tagttggcaa
     8161 tagtatagac accattttag aggcatcaat ttgaagttgt tgcggttgcg actccgccat
     8221 tagctcaggc gaatttggcg acactaaaat aaaaaccaac tgcacaacca caatggtgac
     8281 aatggcaaac agtgaaaatg cttgttgatt acgcataaag ttccaacttt gctgcaataa
     8341 atcgacaaat ttaattgaca taaaataccc ttcaatagat tgtaaatatt ttgttgtgaa
     8401 gtatagcaag gcttgagcca aactgcatta acctattgta gattttaatc agttagctaa
     8461 aataaaagaa aaatttgaaa gagataatcc tatgttaagc ttatttgatg caggacagcg
     8521 ttacctcaac actctgccga atcagaaaaa attagccaat tttatgccag attaccacat
     8581 tattcgcttg gtaaaatttt cctctaaagt aatgcctgct tttgcttgct ttgcattagt
     8641 ttggcaatat tgctttaccg atccgaccca atctatttta gccaattcgg tacttactgc
     8701 tgttttcgcc atttctattc cgtttcaagg gttatattgg cttggaaaac gggcaagatc
     8761 accgttatct ttatcattat tggaatggta tgagtcgctt agacaaaaat taatttcggc
     8821 acaagtcaaa ttagaagaaa cacaagcggt accttctttc caagattttg caaatttact
     8881 caagctagca gaagagactt ggggagatga atattttgat gagttataaa ataaaaaaag
     8941 ccccacttaa aataagtggg gtaaaacttt tgttctaatt ctggaggttt gaattactgt
     9001 ttta
//
LOCUS       DANLZD010000107         8960 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.107, whole genome shotgun sequence.
ACCESSION   DANLZD010000107 DANLZD010000000
VERSION     DANLZD010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8960
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.107"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..217
                     /gene="zapB"
                     /locus_tag="PXE26_001885"
     CDS             <1..217
                     /gene="zapB"
                     /locus_tag="PXE26_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell division protein ZapB"
                     /protein_id="HDL5594448.1"
                     /translation="SLSVLDQLEEKIKQAVETIQLLQLEVEELKGKNDAAKQENDTLR
                     SEYEQLKVEQQNFQDRLRSLLGQIDNV"
     gene            273..854
                     /locus_tag="PXE26_001886"
     CDS             273..854
                     /locus_tag="PXE26_001886"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014064645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HDL5594449.1"
                     /translation="MAKLYFYYSSMNAGKSTTLLQSSYNYQERGMNTLVYTAAIDDRF
                     GVGKVNSRIGISQEANLFTADTNLFAEIKALHSNKALHCILIDEAQFLTKTQVYQLSD
                     VVDKLKIPVLCYGLRTDFQAELFEGSKYLLAWADELEELKTICDCGKKAHFVVRLNEK
                     GEAIKDGEQIQIGGNDRYLSVCRYHYKQKLGKL"
     gene            complement(945..2063)
                     /locus_tag="PXE26_001887"
     CDS             complement(945..2063)
                     /locus_tag="PXE26_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HDL5594450.1"
                     /translation="MTTTYFHLMAKPSSFHCNIQCEYCFYLSKEQTIPPEKSQFMNDE
                     TLQNYIRHYIEANQSQRVDFVWQGGEPTLLGLDFYKQAVKYQQKFANGKQITNAIQTN
                     GIALNRQWASFFKENHFLVGLSIDGLSDIHDRYRISTNGKPTFERVKSAVDLLKEVGV
                     EFNTLTVVNDRNWQRGRETYQALKALGSRYMQFIPVVESHKGELQPFSVPPQGYGQFL
                     VDVFHEWLPDRGQIFVIEFDNLLGQWLGYPSNNCVFRPTCGSSLVVEACGDVYSCDHF
                     VYPDYHIGNLNQQQLAEIVSSAAQRQFGQNKQAKLSQACLNCKFRILCHGGCPKHRIV
                     PQANSENHNYLCPSYQQFFAETSSVMRQMSEQIRFAGK"
     gene            complement(2153..3601)
                     /locus_tag="PXE26_001888"
     CDS             complement(2153..3601)
                     /locus_tag="PXE26_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HDL5594451.1"
                     /translation="MNNIIYILLDQVRKDMLGTYGHQVVKTPNLDRLAKDGIRFNNAF
                     TPASVCGPARTSLFTGLMPSSHGIIKNGEKGGTGEIPQQNPNIAGVEGYNSFVIGKWH
                     VGTKSVPEDYGIAGHNFDGYGYPGSQVYKNLVFNQPPTHSNRYREWLAEKGYDAPEVS
                     RAYFGDNPHLRVQELCGLLSGSREQTIEWFIIDEAKKYIQASLDEKKPFFAWINFWGP
                     HTPCVVPEPYYSMYDPSQVVLDESFFKPLEGKPNHFRTISQMWGMWEASEDRWKEVIS
                     KFWGYITLIDDAIGELFRFLEENNLYENTFLVATADHGDAMGAHKMIEKGEFMFETTY
                     NIPLIIKDPHSTRVNEVDDNLVYLHDLTSTVYDVANQPIPTAFQGESILPITRQSQNN
                     DRKGLLCQLAGHFVYFEQRMWRRKDYKLVFNATDRCELYDVRKDPEEMHNLFYDEAYQ
                     AVKKEMLEEMRQEMKRLNDPLENWVYRIIDEI"
     gene            complement(3748..5445)
                     /locus_tag="PXE26_001889"
     CDS             complement(3748..5445)
                     /locus_tag="PXE26_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="solute:sodium symporter family transporter"
                     /protein_id="HDL5594452.1"
                     /translation="MLLTIITFLVVTGLVGYISWLKTRNDDLSTSKGYFLAGRGLSAT
                     VIGCSMVLTSLSTEQLIGVNANSYAGNFSIIAWTVPAVIPLCFLALYLLPKYIRNGYT
                     TIPEFFENRFDRQTRLIMSGLFLVFYLFIVIPTALYTGAIAFNKIFNLETAFGLSYGA
                     AITYTVIAIGIVGAIYAIFGGLKAVAVSDTWNAVLLVIGALLVPVFALIYLGNGSMAE
                     GVKIITTTHVEKWNAVGSATDAVPWPTIFTGIMVVHFFYWTTNQAIVQRALGARDLKA
                     GQKGILIAALFLLLLPLILNLPGLLSFHILGEGLKPIDVSYPELVNKTFPTVLQGFFI
                     AALFGAILSTFNSFLNSAATIYCKDLLPSISKKQFTDAELISYAKKVSAVMAVITMIF
                     GPLLMFGTDGIFLLTKRFAGFVNIPIVALFVIGLFNKTVSGKAARIALLAHVILYFCI
                     VWVFDVKINFVYVQAGLFVFDVALMLILGIFLKRATPYEDNKINHANVDLTSWEYAPL
                     AVASIVLGLFTLYAFLSPLGLASPDGNPAMVLAVYAVLQAVVCVVFFAKCKGKKAVN"
     gene            complement(5589..6140)
                     /locus_tag="PXE26_001890"
     CDS             complement(5589..6140)
                     /locus_tag="PXE26_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HDL5594453.1"
                     /translation="MNNMPTPEQLMSCQLSVMSDLEKGVVIYSQGYHAREFYFLKSGL
                     IGLYHMLENGKESLVRVYKANDYFGFRTFFGDNRYHCSARVLQPAELIRITPLNFIEF
                     WSNNSALIISLLKQLSTELQDAEHRLSMVSYQKTQERVMNSIHYLHQRYPNYHWTNRE
                     IAEFAGCETETAIRLRRELKKIS"
     gene            6239..7048
                     /locus_tag="PXE26_001891"
     CDS             6239..7048
                     /locus_tag="PXE26_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDL5594454.1"
                     /translation="MTMTVIIILIICGIIVNITSALFGIGGGVLMMPILHSLFPELPL
                     QVISACSLTIVIGSATINLCLFHHQQIKINRKNVLIWSLAMMLGVQIGFELSFLFSDN
                     SIIAIFILTLLTLSFKTLFHKPRVKAIVPPKPKEAVSNATMCSLGGLIAGITGIGGGS
                     IMAPIVTQIRSVSPKQVAVYTNYMMVIGGIGNLYGYLSRPFVLNSTLATWQIGYVNFA
                     IVGTVVISSLFTVYFSMKLRNILSPELTTKLLGVILFTIACYMGFLQYLFT"
     gene            complement(7065..7757)
                     /gene="tsaB"
                     /locus_tag="PXE26_001892"
     CDS             complement(7065..7757)
                     /gene="tsaB"
                     /locus_tag="PXE26_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HDL5594455.1"
                     /translation="MKPSILALDTATEACSVALQYNGNITFLDEISPRSHTQRILPMV
                     DELLNQANIELKEVNYLVFGRGPGSFTGVRVGVSVAQGLAMGANLPVVAVSNLKAMAE
                     EAYQKLGATKVIALIDARMNEVYFAQFERKGEEWNEVVAEQVCSPEVAISQFQMSEET
                     VVVGTGWAAYSQFSEQNLPLVISDITLPSSRYMLSIAETEIQKGNIQSAFEIEPVYLR
                     NEVTWEKLPHKQ"
     gene            complement(7844..8926)
                     /gene="aroG"
                     /locus_tag="PXE26_001893"
     CDS             complement(7844..8926)
                     /gene="aroG"
                     /locus_tag="PXE26_001893"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HDL5594456.1"
                     /translation="MSYIKNDDVRITSIEELLPPIALLEAYPASDVAAETVAKTRQSI
                     HKILHGADDRLLVVIGPCSIHDPKAALEYAQKIKAMRADPKINQNLEVVMRVYFEKPR
                     TTVGWKGLINDPYLNETFALNDGLRIARKVLSDINDLSVPTAGEFLDMITPQYVADFM
                     SWGAIGARTTESQVHRELASGLSCAVGFKNGTNGSVKIALDAISSAKSPHHFLSVTKF
                     GHSAIVSTAGNPDCHIILRGGDSATNYDADSVAAACAAIEKSGGRPHVMIDFSHANSQ
                     KQFKRQMDVCADVCNQIAGGSDFISGVMIESHLVEGRQDLIEGKGLEALVYGQSITDG
                     CIGWEDSEKALFALAEAVEKRRNFAK"
BASE COUNT         2488 a         1986 c         1889 g         2597 t
ORIGIN      
        1 gtcattatcg gttttagacc aattagaaga aaaaattaaa caagctgttg aaactattca
       61 attacttcaa ttagaagttg aagaattaaa aggtaaaaac gatgcagcga aacaagaaaa
      121 cgacaccttg cgcagcgaat atgaacaatt aaaagtggaa caacaaaact tccaagatcg
      181 tttacgttca cttttaggtc aaatcgacaa cgtttaattc tattttcagc acaaacggct
      241 aaatttttag ccgtttttta tttgttacag ctatggcaaa actctatttt tactactcct
      301 caatgaatgc aggcaaatct actactctgc ttcaatcttc ttataattac caagaacgtg
      361 gaatgaacac tttagtttat accgccgcta ttgatgaccg tttcggtgtg gggaaagtca
      421 actctcgtat cggtatttca caagaagcca atttatttac cgctgatacc aatctatttg
      481 cggaaattaa ggcattacac tcaaacaaag cgttacactg tatcttgatt gatgaggctc
      541 agtttttaac taaaacacag gtttatcaat taagtgatgt ggtcgataaa ctcaaaattc
      601 cggtgctttg ctacgggcta cgcaccgatt tccaagctga attatttgaa ggtagcaaat
      661 atttgttggc ttgggcagat gagctggaag aactcaaaac catctgtgat tgtggcaaaa
      721 aagcccattt tgtcgttcga ttaaatgaaa aaggcgaagc cattaaagac ggtgaacaaa
      781 tacaaatcgg cggcaatgat agatatctct ctgtttgccg ttatcattac aaacaaaagt
      841 taggtaagct ataagctaca agaagcagca agcggttaaa ttttcgggaa tttttgcaaa
      901 ttttcagcga aatttaaccg cttgtttgtg ttatttacct ctctttactt tcctgcaaac
      961 cgaatttgct cactcatttg tctcatcaca ctcgaagtct cggcaaaaaa ctgttggtaa
     1021 gaggggcaaa ggtagttgtg gttttcgctg tttgcttggg ggacgatgcg gtgtttgggg
     1081 cagccgccgt ggcaaagtat gcggaatttg cagtttaggc aggcttgcga gagttttgcc
     1141 tgtttattct gcccgaattg gcgttgggcg gctgatgaga cgatctctgc cagctgctgt
     1201 tggttgaggt tgccgatgtg gtaatcggga tagacgaaat ggtcgcaact gtacacatcg
     1261 ccacaggctt ccaccaccag cgagctgcca caggtcgggc ggaatacaca gttgttggag
     1321 ggatagccaa gccattgccc gagcaggtta tcaaactcga tcacaaaaat ctgcccacgg
     1381 tcaggcagcc attcgtgaaa aacatccact aaaaattgcc cgtagccttg gggcggaacg
     1441 gaaaagggtt gtaattcccc cttgtggctt tccaccaccg gaatgaactg catataacgg
     1501 ctaccgaggg ctttgagggc ttgataggtt tctctgcccc gttgccagtt gcggtcgttc
     1561 accaccgtga gggtgttaaa ttccacgcca acctctttca ataaatcgac cgcacttttc
     1621 acccgttcaa aggtcggttt accgttggtg gaaatgcggt agcggtcgtg aatgtcgctc
     1681 agtccgtcaa tggataagcc caccagaaaa tgattctctt tgaaaaagct cgcccactgg
     1741 cggtttaggg caatgccgtt ggtttggatt gcgttggtga tctgcttgcc gtttgcaaat
     1801 ttttgttgat atttgaccgc ttgtttgtag aaatctaagc ccagcagggt cggctcgccc
     1861 ccctgccaca caaaatccac ccgttggctt tggttggctt caatgtaatg acgaatgtag
     1921 ttttgcagcg tttcatcgtt cataaactgc gatttttctg gcggaatggt ctgttccttg
     1981 ctcagataaa aacagtactc gcactgaata ttacagtgaa aactgctggg ttttgccatt
     2041 aggtggaagt aggtggtggt cattgtatct ctaaattgta ggggcggact ttatgttcgc
     2101 ccattgttta cattaatttt cgggcgggta taaaacccgc ctctacaaac aattatatct
     2161 catcaataat ccgatacacc caattttcca gtgggtcgtt gaggcgtttc atttcctgtc
     2221 gcatttcttc caacatctct tttttcacgg cttggtaggc ttcgtcataa aagaggttgt
     2281 gcatctcttc ggggtctttt ctgacatcgt agagttcgca gcggtcggtg gcgttgaaga
     2341 ccaatttgta atccttacgc cgccacattc gctgttcaaa atagacaaaa tgccctgcca
     2401 gttggcacaa caagcctttg cggtcgttgt tttggctttg tctggttatc ggcagaatac
     2461 tctcgccttg gaaagcggtc gggatcggtt gatttgccac atcatacacg gtggaagtga
     2521 gatcgtgcaa ataaacgagg ttgtcatcga cttcgttcac ccttgtagag tgcggatctt
     2581 taataatcag cggaatgttg taggtggttt caaacataaa ctcgcctttt tcgatcatct
     2641 tatgcgcccc catcgcatcg ccgtggtcgg cggtagcaac gaggaaggta ttttcataga
     2701 gattgttctc ttccaagaaa cggaacagct cgccaatggc atcgtcaatc agcgtgatgt
     2761 agccccagaa tttagaaatc acctctttcc aacgatcttc gctcgcctcc cacattcccc
     2821 acatttgtga aatggtgcgg aagtggttcg gtttgccctc aagcggtttg aagaaactct
     2881 cgtccaatac cacttggctt gggtcataca ttgaataata cggctccggc actacacacg
     2941 gagtgtgcgg cccccagaag ttgatccacg caaagaacgg ttttttctca tcaagggagg
     3001 cttgaatgta ttttttcgcc tcgtcaatga taaaccactc tattgtctgc tcgcgactgc
     3061 cggaaagcaa accacagagt tcctgcacac gcaggtgtgg attgtcgcca aaataggctc
     3121 gactgacttc gggtgcgtca tagccctttt ccgccagcca ttcacgataa cggttggagt
     3181 gtgttggcgg ctgattaaac acgaggtttt tatacacttg gctgcccggg tagccatagc
     3241 cgtcaaagtt atgaccggcg atgccataat cttcgggaac ggattttgta ccaacgtgcc
     3301 atttgccgat cacaaaggag ttatagccct ccacgccggc aatattaggg ttttgttgtg
     3361 gaatttcgcc tgtgccgcct ttttcgccgt ttttgataat cccgtggctg gacggcatta
     3421 agccggtaaa cagcgaggtg cgagccggcc cgcagaccga agccggcgta aaggcgttgt
     3481 taaaccgaat gccgtctttc gccaagcgat ccaaattcgg ggtttttacc acctgatgcc
     3541 cgtaagtgcc gagcatatct ttacgcactt gatctaacaa aatatagatg atgttattca
     3601 taatgacctc tttaaggctt gttaataacc gataaattat caagtttcgg agatctgttc
     3661 ccctctttag caaagagggg atttttgatc tcgagccttt tccgttcttg gtatttttat
     3721 actaatgagg agaaggctca cattcattta attcaccgcc tttttgcctt tacattttgc
     3781 aaaaaacacg acacaaacca ccgcttgtag cacagcatac accgccagca ccattgccgg
     3841 attgccgtct ggtgaggcta aaccgagcgg agagaggaaa gcgtatagcg tgaataagcc
     3901 caacacgata gaagccactg ccagtggggc atattcccag ctggttaagt ccacattggc
     3961 gtggttgatt ttgttgtctt cgtatggagt cgcacgtttt aggaaaattc ctaaaatcag
     4021 cattaacgcc acatcgaaca cgaacaagcc agcttgcaca tacacgaagt tgatttttac
     4081 atcaaacacc caaacgatgc agaagtagag aataacgtgt gcgagtaagg caatgcgtgc
     4141 ggctttgcct gagacggttt tgttgaataa gccgatgaca aacagtgcca caatcggaat
     4201 gttcacaaaa ccggcgaaac gtttggtcag caagaaaata ccgtctgtgc cgaacatcag
     4261 taacggccca aagatcatcg taatcaccgc cattaccgca gagacttttt tcgcataact
     4321 tatcagttcc gcatctgtga actgtttttt gctgatagac ggcagtaagt ctttacagta
     4381 aatggttgcc gctgagttta agaacgagtt gaaggtactc aaaatcgccc cgaacagtgc
     4441 ggcaataaag aagccttgta gcacggttgg gaaagtttta ttcactaatt cagggtaaga
     4501 cacatcaatc ggtttcaagc cctcacctaa aatatggaaa ctgagtaagc ccggtaagtt
     4561 taagataagc ggtagcaata ataagaacag tgccgcaatt aagatccctt tttgaccggc
     4621 ttttaagtct ctcgccccca aggcacgttg cacaatggct tggttggtcg tccagtagaa
     4681 gaaatgcacc accataatac cggtgaaaat ggtcggccaa ggcactgcat cggtggcact
     4741 acccaccgca ttccattttt caacgtgagt agtggtgatg attttcaccc cttctgccat
     4801 actgccatta cctaaataga taagtgcaaa caccggcact aataatgccc caatgactaa
     4861 caagaccgca ttccaagtgt ctgacaccgc caccgctttt aagccaccga aaatggcata
     4921 aatcgcccca acaataccaa tcgcaatcac cgtataggta atcgctgccc catagcttaa
     4981 gccgaaggca gtttcaaggt tgaagatttt attgaaggca atcgcaccgg tgtaaagtgc
     5041 agtcggaatg acgatgaaaa gatagaacac caaaaacaag cccgacataa tcaaacgggt
     5101 ttggcggtcg aaacggtttt caaagaactc cggaatggtg gtataaccgt tgcggatata
     5161 tttcggcaac agataaagtg ccaagaagca aagcggaatt accgccggca cagtccacgc
     5221 aataattgag aaattaccgg cataagagtt ggcattcacg ccgataagtt gctcggtaga
     5281 aagggaggtt aagaccatcg aacagccgat aaccgtagca ctcaagccac gccctgccaa
     5341 gaaataacct ttagatgtcg aaagatcgtc gtttctggtt tttagccaag agatataccc
     5401 gactaatcca gttacaacca gaaaggtaat tattgttaat aacatattct tcacctcaat
     5461 atgactatat aaatgatata tcccattaga gacggcaata gcataaatct tatttttaac
     5521 gatagaatat gatgtttgtc ataatagata tgtgatggtg atcacaacta tgaataattt
     5581 atgacaattt aactgatttt ctttaattct cgccttaatc gaatggctgt ttcggtttca
     5641 caacctgcaa attcggcgat ttcacggtta gtccagtgat aattgggata acgttggtgt
     5701 aaataatgaa tactgttcat tacccgctct tgcgtttttt gataggaaac cattgataaa
     5761 cgatgctctg cgtcttgtaa ttctgtcgag agctgtttta acagagagat aattaaggcg
     5821 gaattattcg accaaaactc aatgaaattt aagggggtaa tacgtatcaa ttctgccggc
     5881 tgtaacaccc gagccgagca atggtagcga ttatcgccaa aaaaggttct aaacccaaaa
     5941 taatcgttgg ctttatatac cctcaccaag ctctctttac cattttcaag catatggtac
     6001 agccctatta atccgctttt taaaaaataa aattctctgg cgtgataacc ctgagaataa
     6061 atgacgactc ctttttctag atcagacatt acacttaatt ggcaagacat caattgttcg
     6121 ggggttggca tattgttcat tgattatcct tattatttta ttttttccat atatgattgc
     6181 gatcataatc ctttatttag aaaattttgc atacttatca cactttagga gatggattat
     6241 gacaatgacc gtgataatta ttttgatcat ttgtggcatt atagtcaata tcacttctgc
     6301 actatttggg attggcgggg gtgttttaat gatgccgatt ttacattcac tgtttcctga
     6361 actgcctctc caagtgattt ccgcctgctc tcttaccatt gtgattggtt cagccactat
     6421 caatttatgc ttattccacc atcaacagat aaaaatcaat cgaaaaaatg tgttgatttg
     6481 gtcacttgcg atgatgttag gcgtacaaat tgggtttgaa ctcagttttc ttttctctga
     6541 taacagcatt atcgctatct ttattctaac cctgctgaca ctttcattta aaaccctatt
     6601 tcacaaacca agagttaaag caatagtacc acctaaacca aaagaagcag tatctaatgc
     6661 cacaatgtgc agtttaggcg gtttaattgc aggtattacc ggcattggcg gcggttcgat
     6721 tatggctccg attgtcacgc aaatacgctc ggtttcaccg aaacaggttg cagtttatac
     6781 taactatatg atggtgattg gcggaatcgg caatttatat ggctacttat cccgcccttt
     6841 tgtgttgaat tcaaccttag caacttggca aatcggctat gtgaattttg caattgtcgg
     6901 caccgtagtg ataagttctc tctttactgt ctatttttca atgaaattac gcaatatctt
     6961 gagtcccgaa ttaactacta aattacttgg tgtaatccta ttcactattg cctgttatat
     7021 gggctttttg caatatttat tcacttaacc ataagttcaa tagattattg cttatgaggt
     7081 agtttttccc aagtaacttc attacgcaaa tacaccggtt ctatttcaaa agcagattgg
     7141 atattgcctt tttgaatctc agtttcagca atcgaaagca tatatcggct ggaaggcaag
     7201 gtaatatcac tgataacaag cggtagattt tgctcagaaa attgcgaata tgccgcccaa
     7261 cctgtgccaa ccaccacagt ctcttcactc atttggaatt gacttattgc gacttctggc
     7321 gaacagactt gttcagccac cacttcattc cattcttcac cctttcgttc aaattgagca
     7381 aagtaaactt cattcattcg ggcatcaatt aaggcaatta cctttgttgc acctaatttt
     7441 tggtatgctt cttctgccat tgcttttaag ttagaaacag ctaccaccgg caaattcgct
     7501 cccattgcca acccttgtgc cacacttaca ccgaccctca caccggtaaa actgcccggc
     7561 ccacgtccga atactaaata atttacttct ttgagttcga tattggcttg attaagtaat
     7621 tcatctacca tcggcaaaat acgttgagta tgggaacgag ggctgatttc atctaagaac
     7681 gtgatatttc cgttatactg taacgctaca gagcaagcct ctgttgcagt atctaaagca
     7741 agaatgctgg gtttcatcat atgtttagtt tgaataaatt aaatttgctt taaggttaaa
     7801 caaataaagg gcgaattata ttcgccctcg gttcaagaaa agattatttt gcaaaatttc
     7861 tgcgcttttc aaccgcttca gcaagtgcga ataacgcttt ttcactatct tcccagccaa
     7921 tgcagccgtc tgtaatactt tgtccgtaaa ctaacgcctc taaacctttg ccttcaatta
     7981 agtcttggcg accttctacc aagtggcttt caatcatcac acctgaaata aagtctgatc
     8041 cacctgcaat ttggttgcac acatcagcac aaacgtccat ttggcgtttg aactgcttct
     8101 ggctgttagc gtggctgaaa tcgatcatca cgtgtggacg tccgccggat ttctcaatcg
     8161 cagcacaagc cgctgcaacg gagtcagcat cgtagttggt tgcgctatcg ccaccacgca
     8221 aaataatgtg acagtcagga tttcctgctg ttgaaacaat cgcagaatgc ccgaatttag
     8281 tgaccgataa gaaatggtgt ggcgattttg cggaagaaat tgcatctaat gcaattttca
     8341 cactaccatt cgtgccgttt ttaaaaccta ccgcacagga taaaccagag gctaattcac
     8401 ggtggacttg agattcagtc gttctcgccc caattgctcc ccagctcata aagtcagcca
     8461 catattgtgg tgtaatcata tccaaaaact cgccggcagt cggcacgctt aaatcattaa
     8521 tatcagataa tactttacgg gcaatgcgta aaccatcgtt taaggcaaag gtttcgttca
     8581 aataagggtc gttaattaag cctttccaac caacggttgt acggggtttt tcaaaataga
     8641 cacgcatcac cacttctaag ttttggttaa ttttcggatc agcacgcatt gctttaattt
     8701 tttgtgcata ttctaatgcc gctttcgggt cgtgaatgga gcaaggtcca atcaccacta
     8761 ataagcgatc atccgcaccg tgtaaaattt tgtggattga ttgacgggtt ttagcaacgg
     8821 tttccgctgc aacatcactt gccggatagg cttccagtaa tgcaataggt ggtagtaatt
     8881 cttcaatact ggtaattctg acatcgtcat ttttgatata agacattgtg ttcactctct
     8941 aaataaaatg aaaataaaat
//
LOCUS       DANLZD010000108         8768 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.108, whole genome shotgun sequence.
ACCESSION   DANLZD010000108 DANLZD010000000
VERSION     DANLZD010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8768)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8768)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8768
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.108"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            2..1300
                     /gene="pilQ"
                     /locus_tag="PXE26_001894"
     CDS             2..1300
                     /gene="pilQ"
                     /locus_tag="PXE26_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus secretin PilQ"
                     /protein_id="HDL5594457.1"
                     /translation="MYFLCGFSLAYANTISIVLKNAPTSLIFTYLAEETGKNMVLDDN
                     IETKSTLRLENKSVDEIFKTLGKVNKLSLTQEDDIVYIHKKEEKAADLTPLPIMNLQN
                     NGQNTPLVTAPKLITKTLKLHYAKASEVIESLTKGSGTFLSENGYIHFDERSNSLIVK
                     DSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHLQELGVRWGIFSRGAGHYKFGG
                     RLEGNGLNNVTNNLNVNFPITGGASAVLQVSSINSRVLDLELSALEQENSVEIIASPR
                     LLTTNKKPASIKQGTEIPYVMYNTKSEATDVEFKEAVLGLEVVPHLSTQNQILLDLIV
                     TQNSPNSQSGSSGLITIDKQELNTQVFAKHGETIVLGGIFQHLTQKGEDKVPILGSIP
                     FIKRLFSQTRDKISKRELVIFVTPYILQSNEKSSNRKKSK"
     gene            1381..1794
                     /gene="nusB"
                     /locus_tag="PXE26_001895"
     CDS             1381..1794
                     /gene="nusB"
                     /locus_tag="PXE26_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HDL5594458.1"
                     /translation="MKISPRRRARECAVQAIYSWYISQNTVEEVELAFVTDQDMKGVD
                     MPYFRKLFRGVVDNVEAIDEALRPYLDRKESDVDPIERSILRLSTYELKFEHDVPFRV
                     VINEGIEVAKVFGSDDSHKYINGILDKLAPALGRK"
     gene            1857..2837
                     /gene="thiL"
                     /locus_tag="PXE26_001896"
     CDS             1857..2837
                     /gene="thiL"
                     /locus_tag="PXE26_001896"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HDL5594459.1"
                     /translation="MGEFDIIERYFNASQRPPRKDVLLSIGDDCALTSLKPNQQLAIT
                     TDTLVCGTHFLPTISPADLAYKSVASNLSDLAAMGAEPAWISLALTLPEINHDWLAEF
                     SEHFFEILDHYNVDLIGGDTTCGPLSLTITAQGIVPQDRGLFRHNAKVGDWIYVSGTL
                     GDSAGGLQLLLNQQSEQVNWNKEQSYLIQRHLRPTPRVLLGLTIASIANAAIDISDGL
                     LSDLSHILKRSDCGAVLNLENFPLSDVLLSCYSRTEAEYFALNGGEDYELCFTVPNDN
                     KAKLDKALANIGVTYTCIGQIRSAKEGLTLLRHNQPVTLPSQRGYDHFKK"
     gene            2842..3315
                     /locus_tag="PXE26_001897"
     CDS             2842..3315
                     /locus_tag="PXE26_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HDL5594460.1"
                     /translation="MKPINLKNPIHFFAFGFGSGLLKPAPGTWGSLAGLIVAIALWSI
                     TQSALFFGLLTLVSFIAGCVICTKASQDLEVHDDGRIVWDEIVAIFLMFTCLPEYNLL
                     GYLLAFISFRIFDILKPFPIRYFDEKLESGLGIMFDDILAAIFALISLHLLYYFI"
     gene            3322..3945
                     /locus_tag="PXE26_001898"
     CDS             3322..3945
                     /locus_tag="PXE26_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HDL5594461.1"
                     /translation="MLTILFIHFAGLISPGPDFFYVVRQSASHSVKSGVLAATGISIG
                     IIFWAAFAIFGLAWLSNSIGSLFQYAIMIIGGCYLVYIGSQMVRVTENIIFVENKAQL
                     TPLNPWQEIKKGLLINIFNAKAGVYFTSVISAYVDNLSNTLQMFELLLLFVVSTFIYF
                     CVVALLFSRRPVRLFYAKYSRYIDNISGVIFILFGSMLIYEGFSHFI"
     gene            4057..4662
                     /gene="ruvA"
                     /locus_tag="PXE26_001899"
     CDS             4057..4662
                     /gene="ruvA"
                     /locus_tag="PXE26_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005686751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HDL5594462.1"
                     /translation="MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEE
                     ATIFTHLVVREDAHLLFGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAI
                     ENEELAKLTKIPGIGRKTAERLLVELKGKFKGMAQSDFFVEVSHEQIVASNTPDPANE
                     ALDALIALGYKPADAEKMIKKVNKSGATSEQLIREALKNSL"
     gene            4799..5803
                     /gene="ruvB"
                     /locus_tag="PXE26_001900"
     CDS             4799..5803
                     /gene="ruvB"
                     /locus_tag="PXE26_001900"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HDL5594463.1"
                     /translation="MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVHDQMEIF
                     IKAAKLREEALDHLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLT
                     NLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
                     TTRAGSLTSPLRDRFGIVQRLEFYSVDDLTLIVKRSADCLNLNLSADGAYEVARRSRG
                     TPRIANRLLRRVRDYADVRNNGIITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERF
                     DGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATSRTYAHLGITQID
                     "
     gene            complement(5902..6585)
                     /gene="artM"
                     /locus_tag="PXE26_001901"
     CDS             complement(5902..6585)
                     /gene="artM"
                     /locus_tag="PXE26_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtM"
                     /protein_id="HDL5594464.1"
                     /translation="MWWDYLVEISQGIGTSLQLTFVALIIAFILAIILTFILSLENRP
                     LKWLVNGFITLFTGTPLLIQFFLIYSGPGQFEWITESAAWVLLSDAWFCAMLALALNS
                     AAYSTLLFHGAVKAIPKGQWETCAALGLSRLDTLKILVPYALKRALPSYSNEIVLVFK
                     GTSLASTITIMDIMGYARQLYGTEYDALSIYGMAGVIYLVITGIMTIVLRKLESRVLA
                     FERFETEKA"
     gene            complement(6585..7256)
                     /gene="artQ"
                     /locus_tag="PXE26_001902"
     CDS             complement(6585..7256)
                     /gene="artQ"
                     /locus_tag="PXE26_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtQ"
                     /protein_id="HDL5594465.1"
                     /translation="MSSDILNLLVNATLMTLGIALASLLIGMLLSIFFVVLETSKIAC
                     IRKPTSIIITLLRGLPEILVVFLIYFGLIQVIFLITDEFAELNAFWCGAIALGIIFAA
                     YASQSLRGAIKAIPVGQWESGTALGLSRAQVFVRIILPQVWRHALPGLSNQWLVLLKD
                     TALVSLIGVDDLMRQSELINANTHQPFTWYGIAALIYLAITLISQRVIKVLEGRFTRF
                     ERGVA"
     gene            complement(7256..7981)
                     /locus_tag="PXE26_001903"
     CDS             complement(7256..7981)
                     /locus_tag="PXE26_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HDL5594466.1"
                     /translation="MKKLLLASAIAFATLSANAQETITFAMEPSYAPFETTNEKGEVI
                     GFDVDIAKALCEELKATCEFKTQSFDSLIAGLKFKNFDAIISGMDITEARQKQVAFTN
                     AYLENSVSYVAMKGKFTPETAKNVGVQNGTTFQQYLSKNAKQYNLKPYASLQSAVLDL
                     KNGRVDMVFGDTPVLAEWLKTEKELDFVGEKVVDKAFFGNGYGIAVNKSNTALLEKLN
                     SALATIKTNGKYEQIYNTWMAGK"
     gene            complement(8007..8741)
                     /gene="artP"
                     /locus_tag="PXE26_001904"
     CDS             complement(8007..8741)
                     /gene="artP"
                     /locus_tag="PXE26_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter ATP-binding protein
                     ArtP"
                     /protein_id="HDL5594467.1"
                     /translation="MAIRIQNVNFFYGSNQALFDINLEIEKGDTVVLLGPSGAGKSTL
                     IRTLNLMEVPQSGTLAIANHQFDLTAKTDSKAVSLLRREVGMVFQQYHLWPHLTVMQN
                     LIEAPMKVLGLSKEEAVARAKGHLARLRLSEFAERFPLHLSGGQQQRVAIARALMMQP
                     QVLLFDEPTAALDPEITAQVVDIIKELQSTGITQVIVTHEVGVARKVASKVVYMEKGT
                     IIEQGDASCFESPKTEQFAQYLSHSE"
BASE COUNT         2636 a         1873 c         1696 g         2563 t
ORIGIN      
        1 tatatatttc ttatgcggtt tttcattagc ctatgcgaat accatttcca tagttttaaa
       61 aaatgctcca acttcgctta tttttactta tttagcggaa gaaaccggta aaaatatggt
      121 gcttgatgat aatattgaaa ccaaatcaac actacgatta gaaaataaat cggttgacga
      181 gatttttaaa acgcttggca aagtcaataa attatcctta acgcaagaag atgatattgt
      241 ttatattcac aaaaaagagg aaaaagcggc tgacttaacg cctctgccaa taatgaattt
      301 gcaaaataat gggcaaaata caccgcttgt caccgcccct aagttaatca caaaaacctt
      361 gaaactacat tatgcaaagg cttcagaggt gattgagtcg ttaaccaaag gcagcggaac
      421 gtttttatcg gaaaacggtt atattcactt tgatgaaaga agcaatagcc tgattgtgaa
      481 agacagtgca aaatcgctta aaaatatcga gaatttagta aaacagctcg accaacccac
      541 cgagcaaatt gcgattgagg ctagaattgt cactatcagt agcgagcatt tgcaagagct
      601 tggcgttcgc tggggaattt tttctcgtgg ggctgggcac tataaatttg gcggacggct
      661 ggaaggcaat ggactcaaca atgtcaccaa taacttaaat gtaaattttc cgattactgg
      721 tggagcatct gccgtattac aggtttcgtc cattaatagc agagtgcttg atttagaatt
      781 aagtgcatta gaacaagaaa atagtgtgga aattattgcc agcccacgcc tgttaaccac
      841 caataaaaag ccggcaagta tcaagcaagg cacggaaatt ccttatgtga tgtacaacac
      901 caaatcggaa gccaccgatg tcgaatttaa agaagcggta ttagggcttg aagtcgttcc
      961 acacctttca acccaaaatc aaattctact cgatctgatc gttacccaaa attcgccaaa
     1021 ttcccaatcc ggcagtagtg gcttaattac gattgataaa caagagctaa atacgcaagt
     1081 atttgccaaa cacggcgaaa ccattgtact tggtggtatt tttcaacatt taacccaaaa
     1141 aggcgaagat aaagtgccga ttttaggctc aattcccttc atcaagcggt tatttagtca
     1201 aactcgagat aaaatcagca aaagagagct agtcattttt gtgacgcctt atatccttca
     1261 atctaatgaa aagagcagca accgcaaaaa atcaaaatag cacatcataa acgcaagcaa
     1321 aaatagggga agtgtgatag aatcagccgt cattttttga gttaaagatt tagaggtttt
     1381 atgaaaattt ccccacgtcg ccgtgcaaga gaatgtgcgg tgcaagccat ttattcttgg
     1441 tatatttccc aaaacacggt tgaagaagtg gaattggcgt ttgtgaccga tcaagatatg
     1501 aaaggcgttg atatgcctta tttccgtaaa cttttccgtg gcgttgtgga taatgtagaa
     1561 gccattgatg aagcattacg cccttattta gatcgtaaag agtcagatgt tgatcctatt
     1621 gaacgttcta ttttgcgttt atcaacttac gaattaaaat ttgaacacga tgtgcctttc
     1681 cgtgtagtca tcaatgaagg gattgaagtc gctaaagtgt tcggctctga tgacagccac
     1741 aaatacatta acggcatttt agataaatta gccccagcat taggcagaaa ataataagat
     1801 tccccaattt atacataaat tggggatttt gattataacg ctcaaggaga ttttttatgg
     1861 gtgaatttga tattatcgaa cgctatttta atgcttctca acgcccacct cgcaaagatg
     1921 ttttactttc tatcggcgat gactgtgcgc tcacatcact caaaccaaat cagcaacttg
     1981 cgatcacaac cgataccctt gtttgcggca ctcattttct accgactatt tcacctgccg
     2041 atctcgctta taaaagtgtg gcgtccaatt taagcgatct tgccgcaatg ggtgcagaac
     2101 ctgcatggat ctctttagcc ttaaccttac ctgaaattaa tcacgattgg ctagctgaat
     2161 ttagtgaaca tttctttgag attcttgatc actataatgt tgatttgatt ggaggggata
     2221 ctacttgtgg accactatct ttgacaatca cagctcaagg gattgtgcca caagatagag
     2281 gcttattccg ccataatgct aaagtaggcg attggatcta tgtttccggc acactcggtg
     2341 acagtgcagg tggtttgcaa cttctgctaa atcagcaaag cgagcaagtg aattggaata
     2401 aagagcaaag ctacctgatt caacgccatt tacgcccaac acctcgagtt ttacttggct
     2461 tgactatcgc ctctattgct aatgcagcga ttgatatttc agatggtcta ttgtctgatt
     2521 taagccatat tttaaagcgc agtgactgtg gtgcagtatt aaaccttgag aatttcccct
     2581 tgtctgacgt cttacttagt tgttattctc gaacagaggc agaatatttt gccttaaacg
     2641 gtggcgaaga ttacgaactc tgctttaccg tgccaaatga caacaaagcc aaattagaca
     2701 aagcattagc caatatcgga gtaacttata catgtattgg gcaaattcgt tcggctaaag
     2761 aaggtttaac cctattacgt cataatcagc ctgtcacctt gccctcacaa cgaggctacg
     2821 atcattttaa aaaataacgc aatgaaacca attaatctta aaaatccgat tcattttttt
     2881 gcctttggct ttggttcagg cttattaaag cctgctcccg gcacctgggg tagcctcgcc
     2941 gggctaattg tagcaatagc cttgtggtct atcacacaat ccgccctgtt tttcggctta
     3001 ctcaccctag tttcttttat tgccggttgt gttatttgca ccaaagccag ccaagatcta
     3061 gaagtacacg atgacgggcg aattgtttgg gacgaaatag ttgccatctt tttgatgttc
     3121 acctgtttgc ctgaatacaa tcttcttggc tacctgctcg cctttatcag ctttcgcatt
     3181 tttgatattt tgaagccttt tccaatccgc tattttgatg aaaaattaga aagcggttta
     3241 ggcattatgt ttgatgatat tctcgcagcc atttttgccc tgatttcact tcatctttta
     3301 tattatttca tttaaaaatt tatgctcact attttattta ttcattttgc cgggcttatc
     3361 agccccggcc ccgatttctt ctatgtcgtc agacaatccg ccagccactc agttaaaagt
     3421 ggggtacttg ccgcaaccgg aatctcaatc ggcattattt tttgggcagc ctttgcgatt
     3481 tttggtttag cgtggctcag taatagtatt ggctcgctgt ttcaatatgc cattatgatt
     3541 atcggtggct gttacctggt ttatattggc tctcaaatgg tacgggtaac cgaaaatatc
     3601 atttttgttg aaaataaagc tcaactcacg ccgctaaacc cttggcagga aattaaaaaa
     3661 ggcttattaa tcaatatctt taatgccaaa gctggcgttt actttaccag cgtcatttca
     3721 gcctatgtag ataatttaag caatacccta caaatgttcg aactacttct actctttgtg
     3781 gtaagtacct ttatttattt ctgtgtggtg gcactactct tttctcgccg accggtcaga
     3841 ctgttctatg ccaaatatag tcgctatatt gacaatatct caggcgtaat tttcatctta
     3901 ttcggctcga tgctgattta tgaaggattc agccacttta tctaatcaca agcggtctga
     3961 tttcactaaa aatttgcaaa ttccgctatc aataaatagt gttattttat acagtttctg
     4021 ctatgctact gccaatttta actctgagag aacaaaatga ttggacgatt acacggcaaa
     4081 attattgaaa agcaaccgcc tgaaatttta ttagacgtgc aaggggtagg ctatgaacta
     4141 ctgctcccga tgaccagttt ctacagcctg ccacaaattg gcgaagaggc gactattttc
     4201 acccatttag tggtgcgaga agatgctcac ttgctattcg gctttgccca aaaacaagat
     4261 agaactctat tccgtgaatt aattaaaacc aacggtgtcg ggccgaagct cgcgttggca
     4321 attctatcag caatgtcggt gtcgcaattt gccaccgcga ttgaaaatga agagctggca
     4381 aaattaacca aaattccggg aatcggtcgg aaaaccgcag aacgcttatt ggtggaactc
     4441 aaaggcaaat ttaaaggaat ggcacagagt gatttctttg tggaagtatc gcacgagcaa
     4501 attgtggcaa gtaatacgcc agacccggca aatgaagccc ttgatgcctt aatagcccta
     4561 ggctacaaac ctgccgatgc ggaaaaaatg attaagaaag tgaataaatc cggtgcaacg
     4621 agcgaacagc ttattcgtga ggcgttaaaa aattcattat gatattgata gtatagggcg
     4681 aaagatattt cgcccctaca atctcatttt taaaaatata tgtgtagggg caaatcaata
     4741 tttgccctca tgagtaatat agggtaatac cattccacta caacaataat ctaaatgtat
     4801 gattgaagca gatagaatca tcagtgcctc gcctaagcgt gaggaagaag ttatagaccg
     4861 agcaatccgc ccgaaactgc ttgccgacta tgtcgggcag ccttctgtgc atgatcaaat
     4921 ggagatcttc atcaaagccg ctaaattgcg ggaagaggca ttagatcact tgctcatttt
     4981 cggcccgccc ggtttgggga aaactaccct tgccaacatt gtggcaaacg aaatgggggt
     5041 gaatattcgc acaacttcag ggccggtgct ggaaaaagca ggcgatttgg cagcaatgct
     5101 gaccaacctt gaaccttacg atgtgctgtt tattgatgag attcaccgcc tttctccagc
     5161 gattgaagaa gtgctttatc ctgcaatgga agattaccag ctcgatatta tgattgggga
     5221 aggacctgct gctcgttcca tcaagctcga tctaccgcct tttacccttg taggggcaac
     5281 cacccgtgcc ggctcactga cctcaccgtt acgagatcgt tttgggattg tacaacgctt
     5341 agaattttac tcagtggacg atcttactct gattgtcaaa cgcagcgccg attgcttaaa
     5401 tctcaatttg tcggcagacg gtgcttatga agtggctcgc cgctcccgtg gcacaccccg
     5461 tattgccaac cgcttactcc gccgagttcg ggattacgcc gatgtgcgta ataatggcat
     5521 tattacctca gacattgcca aacaagctct ggcaatgctc gatgtggatt cggaaggctt
     5581 tgattttatg gacattaaac tgttgcaagc gattgtagaa cgctttgatg gcgggccagt
     5641 tggattagac aatcttgcgg cagctatcgg cgaagaacga gatacgattg aagatgtgct
     5701 agagccttat ctgattcagc aaggctttct acaacgcaca ccaagaggca gaattgctac
     5761 cagcagaacc tatgcccatt taggtataac ccaaatagat tagtcatatt tctaaaggca
     5821 ttgatacata aataaaaagc ggatagttag tactatccgc tttcatttgc aaaaaatcaa
     5881 taaaatttga ccgcttatcc gctaggcttt ttcagtctca aaacgctcaa aagctaatac
     5941 tctgctttct aattttctga gaacgattgt cataatgccg gtaattacca agtaaataac
     6001 ccctgccata ccataaattg ataatgcgtc atactctgta ccataaagct ggcgagcata
     6061 gcccataata tccataatcg taatggttga agcaagcgat gtgcctttaa aaactagcac
     6121 aatctcatta ctataagaag gtaaagcacg ttttaatgcg taaggcacta aaattttcag
     6181 tgtatctaaa cggctcaaac caagggctgc gcaagtttcc cattgcccct tcggaatcgc
     6241 ttttaccgca ccgtggaaca acaatgtcga ataggcagca ctgtttaacg ctaaagccaa
     6301 cattgcacag aaccaagcgt cggataataa tacccaagcc gcactttctg taatccattc
     6361 aaattgcccc gggccactat aaatcaagaa aaattgaatt aataaaggcg ttccggtaaa
     6421 aagcgtaata aatccgttta ccaaccactt taacggacga ttttctaacg agagaataaa
     6481 cgtaagaatg atcgctaaaa taaaggcaat gatgagcgcc acaaaagtga gctgtaggct
     6541 ggtgccaata ccctgtgaaa tttcaactaa ataatcccac cacattaagc aactcctcgc
     6601 tcaaaacggg taaatctacc ttctaatact ttaatcactc gctggctaat tagagtaatc
     6661 gctaaataaa taagtgctgc tatcccatac caagtaaaag gttgatgagt attagcatta
     6721 attaactccg attgacgcat taaatcatct accccaatta acgataccaa tgccgtatct
     6781 tttaacagca ctaaccactg attgcttaag cctggtaaag cgtgtcgcca gacttgaggg
     6841 agaataatgc gaacaaatac ttgcgctcgg cttaacccta acgccgtacc agattcccac
     6901 tgcccaactg gaatagcttt aattgcacca cgtaaagatt gggaagcata agcagcaaaa
     6961 ataataccca gcgcaatagc cccacaccag aaagcattta actccgcaaa ctcatcggtg
     7021 atcaagaaaa taacttggat aagaccaaaa tagatcaaaa ataccactaa aatctccggc
     7081 aacccacgca ataatgtaat tattatacta gttggtttac ggatacatgc aatcttactg
     7141 gtttcaagta ccacaaaaaa gattgacaat aacattccaa tcaagaggct tgccagcgca
     7201 atccctaagg tcatcagggt tgcgttgaca agtaagttta aaatatcgct agacattatt
     7261 tcccagccat ccaagtatta taaatttgct catatttacc atttgttttg atggtagcta
     7321 aagccgaatt taatttttca agcaatgcag tgttagattt atttaccgca ataccatatc
     7381 cattaccaaa aaaggcttta tcgactactt tttcacccac gaaatctaac tctttttcgg
     7441 tttttagcca ctctgccaat actggtgtat caccaaatac catatcaaca cgtccatttt
     7501 ttaaatctaa cactgctgat tgtaggctag cgtaaggttt taaattatat tgtttggcat
     7561 ttttgcttaa gtattgttga aaagttgtac cattttgcac gccgacattc ttagctgttt
     7621 ccggtgtaaa tttccccttc attgcgacat aacttactga gttttctaaa taagcattgg
     7681 taaaggcaac ctgtttttga cgcgcttcag taatatccat gcctgaaata attgcatcaa
     7741 aatttttaaa ttttaatccc gcaattaagc tatcgaatga ttgcgtttta aattcgcaag
     7801 ttgcttttag ttcttcacat aatgcttttg caatatctac atcaaagcca ataacttcac
     7861 ctttttcatt tgttgtttca aaaggggcgt aagaaggctc catcgcaaaa gtgatagttt
     7921 cttgtgcatt ggcagaaagc gttgcaaatg cgatagcgga agctaataat aattttttca
     7981 ttgttgtgtc cttttgttgt tatagattac tctgagtgag ataaatattg agcaaattgc
     8041 tctgttttcg gtgattcaaa acaacttgca tcaccttgtt caataattgt acctttttcc
     8101 atgtacacca ctttgcttgc caccttacga gcaacgccta cttcgtgagt cacaatcacc
     8161 tgagtaatgc ctgtagattg caattcttta ataatatcaa ctacttgtgc agtaatttcc
     8221 gggtcaagtg ctgcggtagg ttcatcaaat aataagacct gtggctgcat catcagtgct
     8281 ctggcaatcg ccacccgttg ttgctgacca cctgaaagat gcagtgggaa acgctcggca
     8341 aactcgctca aacgcaaacg tgccaaatgt ccttttgctc tggcaaccgc ttcttctttg
     8401 cttaacccaa gcactttcat cggggcttca attaagtttt gcattacggt taaatgcggc
     8461 cataaatgat actgctggaa caccattccc acctcacggc gtaacaaact caccgctttg
     8521 ctgtcggttt tagcagttaa atcaaattga tgatttgcaa tcgccaaagt gcctgattgc
     8581 ggtacttcca ttaagtttaa ggttcgaatt agggtacttt tacctgcccc actcgggcca
     8641 agcaatacaa cagtatcccc tttttcaatc tctaagttaa tgtcaaataa ggcttggttt
     8701 gagccataaa aaaaattgac attttgaata cgaattgcca ttcgttaaaa tcctactaca
     8761 tttaaaat
//
LOCUS       DANLZD010000109         8620 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.109, whole genome shotgun sequence.
ACCESSION   DANLZD010000109 DANLZD010000000
VERSION     DANLZD010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8620)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8620)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8620
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.109"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            31..300
                     /locus_tag="PXE26_001905"
     CDS             31..300
                     /locus_tag="PXE26_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005540356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL5594468.1"
                     /translation="MKIMAVCGSGLGSSFMMEMNIKKVLAKLGVEAEVSHTDLSSVVA
                     DDADLFVMAKDIAASSNVPKEKLIVVKNIVGLAEFEEKLTAYFNQ"
     gene            313..1663
                     /locus_tag="PXE26_001906"
                     /pseudo
     CDS             313..1663
                     /locus_tag="PXE26_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013745980.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
     gene            complement(1758..2906)
                     /gene="dprA"
                     /locus_tag="PXE26_001907"
     CDS             complement(1758..2906)
                     /gene="dprA"
                     /locus_tag="PXE26_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HDL5594469.1"
                     /translation="MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQI
                     GWNEKQIQRWFNPDQKWIDQAMTWSELPNQQIVTLFDENYPFLLKQISTAPPLIYVKG
                     NVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHQKIVM
                     EQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNQPPVAENFPRRNRIIS
                     GLSLGTLVIEATLNSGSLITARYALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVE
                     GVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAKNLPSLTACQQQIYQH
                     ISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGGYVMDNGY"
     gene            2995..3507
                     /gene="def"
                     /locus_tag="PXE26_001908"
     CDS             2995..3507
                     /gene="def"
                     /locus_tag="PXE26_001908"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HDL5594470.1"
                     /translation="MAILDVVLYPDEKLATVCEPVEQVDEALNRFIDDMFETMYEHEG
                     IGLAAPQVGVLKRVITIDIEGDKTNQVVLINPEILESSGETGIEEGCLSIPGHRALVP
                     RKEKVKVKALNRQGEEIIIDADDLFAICIQHEIDHLNGVLFVDHISNLKRQRIKEKMQ
                     KLKKQIARAK"
     gene            3601..4527
                     /gene="rfaD"
                     /locus_tag="PXE26_001909"
     CDS             3601..4527
                     /gene="rfaD"
                     /locus_tag="PXE26_001909"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HDL5594471.1"
                     /translation="MIIVTGGAGMIGSNIVKALNEIGRKDILVVDNLKNGEKFINLVD
                     LDIADYCDKEDFIASIIAGDDFGEIDAVFHQGACSATTEWDGKYLMQNNYEYSKELLH
                     FCLDRQIPFFYASSAATYGGRSDNFIEKREFEGPLNAYGYSKFLFDEYVRRILPEAES
                     PVCGFKYFNVYGPREQHKGSMASVAFHLNNQMLKGENPKLFAGSEQFLRDFVYVEDVA
                     KVNLWAWQNSISGIFNLGTGKAESFQEVANAVIKYHGKGEIETIPFPDHLKSRYQTFT
                     QADLTNLRAAGYTGTFKTVAEGTAEYMAWLNR"
     gene            complement(4595..5125)
                     /gene="fabA"
                     /locus_tag="PXE26_001910"
     CDS             complement(4595..5125)
                     /gene="fabA"
                     /locus_tag="PXE26_001910"
                     /EC_number="4.2.1.59"
                     /EC_number="5.3.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017807287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-hydroxydecanoyl-ACP
                     dehydratase/trans-2-decenoyl-ACP isomerase"
                     /protein_id="HDL5594472.1"
                     /translation="MNSCTPIIKPSYTYEELLLSGKGELFGEKGPQLPAPPMLMMDRI
                     IEMNQEKGNFEKGYIEAEFDIKPDLWFFNCHFINDPVMPGCLGLDAMWQLVGFYLGWI
                     GGEGKGRALGVGEVKFTGQILPTAKKVTYRIHMKRVVNRKLVMGVADGEVEVDGRVIY
                     TATDLKVGLFQDTTAF"
     gene            complement(5238..6875)
                     /locus_tag="PXE26_001911"
     CDS             complement(5238..6875)
                     /locus_tag="PXE26_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5594473.1"
                     /translation="MTLSLLSSQKLVMQNDFSRLDEKLNFLDFQPQAKQALNQFLQSQ
                     FGALLVLKSELFPEFINEITEYLKKYSVDLPIISKMDFNKNSLFGYSVFLERELKTEY
                     VKGAIHEADKGILIVNIRSLLLDITQWDKLKQALLFGEYEPNSVNHSPYLSAKEKSTF
                     KLILVGEREDISTLSAYDDGLYQFGQYTEIKSYLSLSDNVEQWGGYVQNYAENLINKR
                     LTSTALNQFLQAYIRESESRELVSISPTLLRKHLLGIQNFYPNVTEIDEVKGYFDYLE
                     QQSSILNQYTVGDILTNQLYIETEGEEIGQINGLSVIEFEGIPHSFGEPLRMSCNVQY
                     GDGEITDIERKVELGGNIHSKGIIIAQSCLANLLELPTQLPFSASIAFEQSYGEIDGD
                     SSSLAIFNVLVSALAKVGLPQSIAVTGAIDQFGNVLSVGGVNQKIEGFFNICHARQLT
                     GKQGVIIPAACVSHLSLSSEVVEAVEQGLFKIWTVENVFDAIAILFERDFYDDEKAPN
                     SAQTALFTLIHQNLDERESEETSGSFLSKICKKIKLD"
     gene            6968..7414
                     /gene="matP"
                     /locus_tag="PXE26_001912"
     CDS             6968..7414
                     /gene="matP"
                     /locus_tag="PXE26_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ter protein MatP"
                     /protein_id="HDL5594474.1"
                     /translation="MRYQKLITQETTWKWQYLLKKHREGENITKYEEQSLIDLKVQFL
                     STLQNSPDEVEKWIKSEMTPEQRKKMRQSVRAKRKRFFNAEKQTTKKKSIDLEYSSWL
                     RLSKYAKSQKLTLSEAIVKLTDELENKQLYLEQVAKMKSSLKDLLK"
     gene            complement(7480..8616)
                     /gene="ompA"
                     /locus_tag="PXE26_001913"
     CDS             complement(7480..8616)
                     /gene="ompA"
                     /locus_tag="PXE26_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_119863613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpA"
                     /protein_id="HDL5594475.1"
                     /translation="MKKTLVALAVLSAAAVAQAAPQANTFYAGAKAGWASFHDGLTQF
                     DNTYDYGSGINLGINLGINRNSVTYGVFGGYQILNQNNFGLATELGYDYFGRVRGNTT
                     FSGDDKEKTAAKHSAHGAHLSLKPSYEVVPNLDVYGKVGVALVRNDYYVQQHVDKDSR
                     IKVHNLKPSLLLGAGLEYAITPELAARVEYQYLNRVGNLDKAVRTTVGYLIPRGTNFQ
                     YSPDIHSVSAGLSYRFGQGAAPVEAPEVVTKNFAFSSDVLFDFGKSSLKPAAATSLDA
                     AHAEISNLGLANLAIQVNGYTDRIGKEASNLKLSQRRAETVANYIVSKGTNPANVTAV
                     GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGSKEVTM"
BASE COUNT         2590 a         1784 c         1649 g         2597 t
ORIGIN      
        1 ctattcattc acctttaatg gagatttact atgaaaatta tggcagtatg tggttccggc
       61 ttaggtagca gctttatgat ggaaatgaac attaaaaaag tattggcaaa actcggtgtc
      121 gaagcggaag tgagtcatac cgacctttcc tctgttgttg ctgatgatgc tgatttattt
      181 gtgatggcaa aagatattgc cgcaagcagc aatgtgccga aagaaaaact catcgtggta
      241 aaaaacattg ttggattagc agaattcgaa gaaaaattga ccgcttactt taaccaataa
      301 cggagatgtt atatggaatc gctactcttt tttatattag atattctcaa agtgccttcc
      361 gttctagtgg gtttaattgc tctggtcggt ttagttgcac agaaaaaatc ggtatccgat
      421 attgttaaag gaacaatcaa aactatttta ggcttcttag tgttaagcgg tggtgcaaca
      481 gtacttttaa gctccctgac tcctttaggc ggtatgtttg aacacgcctt caacgtgcaa
      541 ggcattatcc ctaataacga agcgattgtg tctatggcaa tcgaaaaata tggtacggcg
      601 actgcgttaa ttatggcatt cggtatggta gccaatattt taattgcacg ttttacccgc
      661 ctaaaattca ttttcttaac cggacaccat accttctata tggcgtgtat gatcggcgta
      721 atcctaaccg ttgccggctt tgaaggtatt cagctcgtct ttgtcggggc attaacctta
      781 gggttaatta tgtttcccga ctatcgctca cttctatatg aaaaaagtga ccgctagcaa
      841 tgatgttgcc ttaggtcatt tcggcacatt gggctacgtg cttgctggtt caatcgggca
      901 actggtagga aaaggctcta aatctaccga agaaatggat ttacctaaaa acctcggctt
      961 cttacgtgat agctccattt ctatttcact cacgatgatg gcgatttact atattctcgc
     1021 ccttgcttcg ggcagtgaat acgtttctac attaagcggc ggacaacatt atttagtgta
     1081 tgccaccatt caagccatca cttttgcagc cggtgtttat gtcattttgc aaggggttcg
     1141 tttaatttta gccgagatcg tcccggcatt taccggcttc tccgaaaaat tagtacctga
     1201 tgccaaaccg gctctcgact gcccgattgt tttcccttac gcccccaatg cggtattagt
     1261 tggatttctt gccagtttct taggtgggat tttaagctta gccattctag ggcaacttaa
     1321 ttgggtgtta attttaccgg gcgtagtgcc acacttcttc tgtggggcaa ctgccggcgt
     1381 atttgggaac gccaccggcg ggcgtcgtgg tgcaattatc ggtgctttta ttcacggcat
     1441 attaattacc ttcttgcctg tattcttatt acctgtactg ggttcattag gctttgctaa
     1501 caccactttc tctgactcag acttcggcgg tattgggatt gtgttaggct atatggctca
     1561 atacttcgac aagaatatca ttacgctcat tattgtcggc ttattcgctc tgttggtagc
     1621 ctataattat ttggcgaaaa aaccggcaaa actgaatacc taattaaaat caggtgttat
     1681 ttgctgcctg cgaggaatct tccctgccat ttcttgatgg tagggaattt tgtttagtta
     1741 aacgacaacg ctcttgttca atacccatta tccatcacat accccccact cacttgttta
     1801 atcacaccgg ctaattccag acccagtaat tcaaccagca atatttcaat cgtcaactcc
     1861 gtaactttgg ctaaatcatc aattgccatc ggctctaagc tgatatgctg ataaatttgc
     1921 tgctggcaag cggtcagact tggcagattt tttgcgaatt tttcgctgtt tttgaccgct
     1981 tgtaaagatg tgcttactgt tggcttagac tcatcaaaca aagggatttg ctgaggttga
     2041 tattgcgagg cgaccacctc taaaatatct tccacacctt ccacgagcaa tgccccttct
     2101 ttaattagct tgtggcaacc ttgtgcgtaa gggttttgta ccgcattcgg taacgcaaac
     2161 acttccctac cttgttcaag ggcataacga gcggtaatca gtgaaccact attaagcgtt
     2221 gcttcaataa ctaaagtgcc gagcgataag ccactaataa ttcgattacg acgaggaaaa
     2281 ttttctgcca ccggcggctg attaggcgag aactccgaca ccaatgcacc acctaaatca
     2341 acaatttgtt cggctaattt tttatggcga gcaggataga cttgatttaa tccactccct
     2401 aacacggcaa tcgttatgcc ttgttccata acgatttttt gatgggcaaa accgtcaata
     2461 ccaatggcta aaccgctggt aatgataata ttatggcgag ctaattcggc agcaaattgc
     2521 ccagcccaat attcaccata atgagaatag tctcggctgc caacaatcgc aatttgtggc
     2581 agagaaaggc tttccacatt tccctttaca taaattaacg gtggcgcagt cgaaatttgt
     2641 tttaagagaa acggataatt ttcatcaaag agtgtcacaa tttgctgatt tggcaattct
     2701 gaccaagtca tcgcctgatc aatccacttt tgatcaggat taaaccaacg ttgaatttgc
     2761 ttttcattcc aacctatttg tttgagttga agtttgtcat agtggcaaaa ttcagcaaaa
     2821 ttgagttccg ccaataatcg ccctatacgt tgagccccca tttgcggcac ttgtaataat
     2881 cgtaataaat cgtagtgata tgccatattt tcatcctcaa aatttcccta ataataagaa
     2941 aaggtttaaa atagccaaac gaatttttta aacttttcga gagagatcac aaaaatggca
     3001 atattagatg ttgtgcttta ccccgatgag aaactggcaa ccgtttgtga accggtggaa
     3061 caggtggacg aagcactgaa tcgttttatc gatgatatgt ttgagacaat gtacgaacac
     3121 gaaggtattg gcttagctgc accgcaagtg ggcgtactta agcgtgttat tactattgat
     3181 attgagggcg acaaaaccaa tcaagtggtg ttaattaacc ctgaaatttt agaaagcagc
     3241 ggtgaaaccg gcattgaaga gggctgtctc tccattcccg ggcatcgtgc cttagtgcca
     3301 cgcaaagaga aagtgaaagt caaagccctt aaccgccaag gcgaagaaat tatcatcgat
     3361 gccgatgatt tatttgcgat ttgtattcaa cacgaaatcg accatttaaa cggcgtgctt
     3421 tttgttgacc acatatccaa tttaaaacgc caacgcatca aagaaaaaat gcaaaaattg
     3481 aaaaagcaaa ttgcacgagc gaaataacca ggcacaagcg gttaaaatgg cttaaaaatt
     3541 tgcaaattaa gtgtgatgac acgataataa ccacagttca actttagaaa ggataaaaat
     3601 atgattatcg tcaccggcgg cgcaggtatg attggcagta acattgttaa agccttaaat
     3661 gaaatcggtc gcaaagatat tttagtagta gataacctca aaaacgggga aaaatttatc
     3721 aacttagtgg acttagatat tgcggattat tgcgataaag aggatttcat cgcctctatt
     3781 atcgccggcg atgattttgg tgagattgat gcggttttcc atcaaggggc ttgctcggca
     3841 accaccgaat gggacggcaa atacttaatg caaaataact acgaatattc aaaagagtta
     3901 ttgcattttt gcttagatcg ccaaattcct ttcttctatg cctcaagtgc ggcaacctat
     3961 ggcggacgtt cggataattt tatcgagaaa cgggagtttg aaggtccatt aaatgcttat
     4021 ggctactcca aattcctgtt tgatgaatat gtccgccgta ttttgcctga ggcagaatca
     4081 ccggtctgtg gtttcaaata tttcaacgta tacgggcctc gtgagcaaca caaaggttca
     4141 atggcaagcg tggcattcca cttaaacaac cagatgttaa aaggggaaaa tccaaaacta
     4201 tttgccggct cagagcagtt cttgcgtgat tttgtttatg tggaagatgt ggcaaaagtg
     4261 aatctttggg cgtggcaaaa cagcatttct ggcattttca acctcggcac cggaaaagcg
     4321 gaatctttcc aagaagttgc gaatgcggtt atcaaatacc acggcaaagg cgaaattgaa
     4381 accatcccat tcccggatca tttaaaatcc cgctaccaaa cgttcactca agcggactta
     4441 accaacctaa gagccgctgg ctacacaggc acatttaaaa ccgttgctga aggaacagcg
     4501 gaatatatgg cgtggttgaa tcgctaatca aacgttgtta aaaaagcaga aagagctacg
     4561 aaatgtagct ctttttgtta taaggttata aggattagaa tgctgtcgta tcttggaata
     4621 agcctacttt taaatcagta gcagtataga tcactcgccc gtccacttcg acttcaccat
     4681 cagcaacccc catcactaac ttacgattga ccacacgttt catatggata cggtaagtaa
     4741 cttttttcgc tgtcggtaaa atttgtccgg tgaattttac ttcacctacg cccaatgcac
     4801 gccctttgcc ttcgccacca atccagccga gataaaaacc aaccagttgc cacatcgcat
     4861 ctaagcctaa gcaacccggc attacaggat cgttaataaa atggcagtta aaaaaccata
     4921 aatccggttt aatatcaaac tcagcttcaa tatacccttt ttcaaaattg cctttttctt
     4981 ggttcatttc aatgatgcga tccatcatta acatcggtgg agccggcaat tgaggccctt
     5041 tttcaccgaa taattctcct tttcctgata gcaaaagctc ttcgtaagta tagcttggtt
     5101 tgataattgg tgtacaactg ttcattattt ttaaaatcct gtaaagtgaa aaaagcctgt
     5161 tatatcaata actgataaat caggctgata gtaacagact tttaattcag tgaacagttg
     5221 taagctgact tgtcggatca gtctagcttt atctttttgc aaattttgct taaaaatgaa
     5281 ccgcttgttt cttcactttc ccgctcatct agattctggt gaatcaaggt aaataatgct
     5341 gtttgggctg agttaggggc tttctcatca tcataaaaat cccgctcaaa cagaatcgct
     5401 atggcatcaa acacattttc caccgtccaa attttaaata gaccttgctc cactgcctca
     5461 acaacttctg aacttaaact caaatggcta acacaggccg ccggaataat cacaccttgt
     5521 ttccccgtta attggcgagc gtgacaaata ttaaagaagc cttcaatttt ctgatttacc
     5581 ccgcccacgc ttagcacatt cccaaattga tcgatagcac ctgtcaccgc aatagattgt
     5641 ggcaagccaa ctttagctaa ggcactcact agtacattga aaatcgcaag agaagaacta
     5701 tccccatcaa tttcaccata ggattgttca aaagcaatcg aagctgaaaa cggtaactgg
     5761 gttggtagtt ctaacagatt cgctaaacaa gattgagcga taataatacc tttggagtgg
     5821 atatttcccc ctagctccac tttacgctca atatctgtaa tttcgccatc accatattgt
     5881 acattacaac tcatgcgtaa gggctcgcca aaactatgcg gaatgccttc aaactcaatg
     5941 accgataagc cattgatctg cccaatttcc tctccttcgg tttcaatata aagttgatta
     6001 gtcagaatat cacccaccgt atattgattt aatatcgatg attgctgttc taaataatca
     6061 aaataacctt ttacctcgtc aatttcggtc acatttgggt aaaaattttg aattcctaat
     6121 aaatgttttc tcaataatgt aggggaaata gacaccaact ctcggctttc actttcacgt
     6181 atataggcct gtaaaaattg attaagcgct gtggaagtta atcgcttatt gatgagattc
     6241 tcagcataat tctgaacata acctccccac tgctccacat tatccgataa tgataagtag
     6301 gattttattt cggtatattg cccaaattgg tacaacccat catcataagc agataaagta
     6361 gaaatatctt ctctttcccc tactaaaatc aatttaaatg ttgatttctc tttagccgat
     6421 aaatagggtg agtgattaac agaatttggc tcatattcac caaataataa tgcctgtttt
     6481 agcttatccc attgggtaat atccaataag agcgaacgga tattaacaat taaaattccc
     6541 ttatctgcct cgtgaattgc acctttaaca tattctgttt tcagctctct ttccaaaaac
     6601 acagaataac caaatagact atttttattg aaatccattt tgctaataat cggcagatct
     6661 acactatatt ttttcagata ttccgtgatt tcattgataa attccggaaa aagctcagat
     6721 tttaagacta ataaagcacc aaactgagat tgtaaaaatt gatttaacgc ttgttttgct
     6781 tgaggttgaa aatctaaaaa attcaatttc tcatctaaac gagagaaatc attttgcatt
     6841 actaattttt ggctactaag taaagaaagg gtcacaaatc tgcctcatta ttgaaaattt
     6901 ggtttattat acaaaattcc gctatacttg ctaaatatag cttacttttt cctatcatat
     6961 tcagattatg cgatatcaga aactcatcac ccaagaaaca acttggaaat ggcaatatct
     7021 cctaaaaaaa catcgtgaag gagaaaatat tactaagtac gaagaacaaa gcttgatcga
     7081 tttaaaagtt cagttcctct ctactttgca aaactctccg gacgaagtgg aaaaatggat
     7141 taagtcggaa atgacgcctg agcaacgtaa gaaaatgcgt caatcagtac gcgccaaacg
     7201 caaacgcttc tttaatgctg aaaagcaaac aaccaagaaa aaatccattg atttagagta
     7261 ttcgagctgg ttaaggctct ctaaatatgc caaaagccaa aaactaacgc tttctgaagc
     7321 tattgtcaaa ttaaccgatg aactcgaaaa taaacaactt tacttagagc aagttgctaa
     7381 aatgaaatca agtttaaaag atttactgaa ataaaaaaag aaaaaagccc actaacaagc
     7441 gggctttttt tgattcaatt tttcaactga ataactatat tacatagtta cttcttttga
     7501 accttgaact tggatttcaa cacgacgatc tggtgctaag caagcgatta atgctttacg
     7561 acctttaact gcatcacatg tgtgaccagt tactgggttt gcttcaccgt aacctacagc
     7621 tgttacatta gctgggttag tacctttaga aacgatgtaa ttagctactg tttcagcacg
     7681 acgttgtgaa agttttaagt tagatgcttc tttaccgatg cggtctgtgt aaccattaac
     7741 ttggatagct aggtttgcta agcctaagtt gctgatttca gcgtgtgctg catctaaaga
     7801 agttgctgct gctggtttta agcttgattt accgaaatca aataaaacat cagagctgaa
     7861 tgcgaagttt ttagttacaa cttctggtgc ttcaactggt gctgcacctt gaccgaaacg
     7921 gtatgataaa cctgcagata ctgagtggat atctgggctg tattggaaat ttgtacctct
     7981 tggtattaga taaccaactg ttgtacgaac tgccttatct aagttaccaa cacgatttaa
     8041 gtattgatat tcaacacgag cagctaattc aggagtaatt gcatactcaa gaccagcacc
     8101 taataataga gatggtttta agttgtgaac tttaatgcgt gaatctttat ctacatgttg
     8161 ttgtacgtag taatcgttgc gaactaatgc aacacctact ttaccgtaaa catctaagtt
     8221 aggaacaact tcgtagcttg gttttaagct taagtgcgca ccgtgagctg aatgtttagc
     8281 cgcagttttt tctttatcat caccagaaaa tgtagtgtta ccacgaacac gaccaaagta
     8341 gtcataacct aattctgtcg ctaaaccaaa gttgttttgg tttaagattt ggtaaccacc
     8401 gaatacaccg taagttacag agttacggtt aataccgagg ttaataccga ggttaatacc
     8461 ggatccataa tcatatgtgt tgtcaaattg agttaaaccg tcgtggaatg atgcccaacc
     8521 agctttagca cctgcgtaga aagtgttagc ttgtggagct gcttgagcta ctgcagctgc
     8581 tgataatact gctaatgcaa ctaatgtttt tttcattttg
//
LOCUS       DANLZD010000110         8565 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.110, whole genome shotgun sequence.
ACCESSION   DANLZD010000110 DANLZD010000000
VERSION     DANLZD010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8565
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.110"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..249)
                     /locus_tag="PXE26_001914"
     CDS             complement(<1..249)
                     /locus_tag="PXE26_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594476.1"
                     /translation="MITSNLERSFHGLNIAQHNYKIFLDESGGNIGKLKHTPNDKKGS
                     NFNRTISSHIGVPPVFVLGGIAQISNANLIAPDWRKLLH"
     gene            complement(276..950)
                     /gene="cas4"
                     /locus_tag="PXE26_001915"
     CDS             complement(276..950)
                     /gene="cas4"
                     /locus_tag="PXE26_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated protein Cas4"
                     /protein_id="HDL5594477.1"
                     /translation="MGDLQNSAEILPLVQPKFGDDKRSISLSALQHYAFCPRQCALIH
                     NEQVWAENYLTAQGQALHERVDSGEPEVRKGIRFERTVHVAAEKLGISGILDLVERDL
                     KTGELKPVEYKRGKPKLDPIDEIQLCAQALCLEEMTEQTINEGALWYMQTRHRLPIIF
                     STELRTKTLATIAEVRSLLDSGTTPPPEYSKRCKACSLIDLCQPKLLERDRSKGYVVG
                     VFGSLL"
     gene            complement(950..1813)
                     /gene="cas7c"
                     /locus_tag="PXE26_001916"
     CDS             complement(950..1813)
                     /gene="cas7c"
                     /locus_tag="PXE26_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas7/Csd2"
                     /protein_id="HDL5594478.1"
                     /translation="MSIQNRYEFVFFFDVTNGNPNGDPDAGNMPRLDPETSKGLVTDV
                     CLKRKIRNFIEMSYENEAGYEIYVKEKSVLNLQNKRAYEALGIESEAKKLPKEEAKAR
                     EITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIIPLEVSITRMAVTN
                     EKDLEKERTMGRKYIVPYALYRVHGFISAKLAEKTGFSDEDVQKLWQALQLMFEHDRS
                     AARGEMAARKLIVFKHDSELGNQPAHKLFDSVKVERINGEKDTPAKDYDDYCISVQTE
                     GLTGVTVEELL"
     gene            complement(1823..3604)
                     /gene="cas8c"
                     /locus_tag="PXE26_001917"
     CDS             complement(1823..3604)
                     /gene="cas8c"
                     /locus_tag="PXE26_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas8c/Csd1"
                     /protein_id="HDL5594479.1"
                     /translation="MITALTRYYYRLAAQEDRLTGEAKVPSYGFSEEKIGWVLELDSK
                     GNLVNVISNLTEDKKPKPKLMSVPRPEKRTSGIKPNFLWDKTAYVLGIESNPDKATAK
                     DQPINFAEKTFEAFKQYHLDLLADSNDEGLMAIRNFLQQWQPTHFAESICPREILDAN
                     VVFKLVGTSGYIHQREAAQTLWTSLLINQSDNAEKGLCLISGKLSPIQRTHPPIKGVF
                     GGQSSGGSIISFNKESFTSFGKEQGSNAPVSEQAAFAYTTALNYLLRTEKHRLTIGDA
                     STVFWAEADNTTQAEAAEGFFAALMTPPDDEQENQKIFEELQKISKGRPLAEISPELS
                     ENTRFYVLGLAPNAARISVRFWLDTTFGQLAKNLSEHWQDLALEPCPWKTPPSIWRLL
                     LQTASLGKSENISPVLAGEMARAVISGHLYPMSLLSQLVTRIRADGDINGLRVALMKA
                     VLQRKFRKGFIKEGVPMSLNKESDNQAYLLGRLFAVLERIQSQALGELNAGIADRYYG
                     SASAVPFSVFPRLLSGAKHHLSRLRKDKGGMAVNLDKDLGEIIASLPENFPRHLSIDE
                     QGRFAIGYYHQKQSYFAKKETTESIEN"
     gene            complement(3626..4303)
                     /gene="cas5c"
                     /locus_tag="PXE26_001918"
     CDS             complement(3626..4303)
                     /gene="cas5c"
                     /locus_tag="PXE26_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas5"
                     /protein_id="HDL5594480.1"
                     /translation="MPNKIRLHIWGDYACFTRPEMKVERVSYDVITPSAARGILAAVH
                     WKPAIRWVIDKIYVLQPIQFESVRRNELGSKISASKISGAMKRKTVADLYTVIEDDRQ
                     QRAATVLKNVGYVIEAHAVLTKMAGEAETVTKHIEMFKRRAKKGQCFQQPCMGVREFA
                     ANFALIDDDEPLPECFLAENERDRDLGWMLHDIDFEHGNQPRFFRAEMKNGVIDVPPF
                     YAEEVKS"
     gene            complement(4545..6296)
                     /locus_tag="PXE26_001919"
                     /pseudo
     CDS             complement(4545..6296)
                     /locus_tag="PXE26_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250669.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
     gene            complement(6286..6747)
                     /locus_tag="PXE26_001920"
     CDS             complement(6286..6747)
                     /locus_tag="PXE26_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594481.1"
                     /translation="MFKPHGSLDWFMAGDVPMTSCIGKVEEPLIITPGVGKYKKGYGQ
                     PFDAHREKANEAIDSASSILCIGYGFNDDHLQTHLTGKIKSGVKTLLLTRGLSENARN
                     VVKEAPNCKALIFDGDKAGTRVVSKQEETFIPNVHWWDVEFFVKEILENGK"
     gene            complement(6906..8042)
                     /locus_tag="PXE26_001921"
     CDS             complement(6906..8042)
                     /locus_tag="PXE26_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5594482.1"
                     /translation="MLLRKAFKFEIRPNGEQVRKMKQFCGCSRFVFNKALAWQNEQYE
                     QDNHHKFSYTKLANLLPQWKKELVWLKDCHSQVLQQSLKDLESAFKNFFQKRADLPKF
                     KKKGVKESFRFPQGCKIEQKNDRLYLPKIGWVRYRNSREIVGEVKNVTVSMKCGRFFV
                     SIQTEFKQEIPTHKGGEIGIDMGIARFATLSNGEFFEPLNAFKTHKGKLAKLQKQLKN
                     KVKFSKNWQKLKDKIGKLHHKIANCRKDFLHKISTQISKNHAMIYVEDLQVANMSKSA
                     KGTAEVHGKNVKQKSGLNRVILDQSWFEFRRQLDYKTQWLGGFLLAVPPQNTSRTCPC
                     CNYTAKENRQTQENFECVECGYTENADVVGAMNVLTRGQAIVQA"
     gene            8089..8505
                     /gene="tnpA"
                     /locus_tag="PXE26_001922"
     CDS             8089..8505
                     /gene="tnpA"
                     /locus_tag="PXE26_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005720092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HDL5594483.1"
                     /translation="MKKETEIRRGRHVVFNLHVHLVFVTKYRREVFTQAILNDLHSIF
                     ATICADFEATLVEFDGEDDHVHLLVEYPPKVAISHLVNSLKGVSSRMIRKKNYPSIRK
                     KLWGNQLWSPSYFAGSCGGAPISIIRQYIEQQQTPD"
BASE COUNT         2340 a         1929 c         1630 g         2666 t
ORIGIN      
        1 atgaaggagt tttctccaat caggagcaat taaattagca ttactaattt gagcaatccc
       61 tcctaataca aatacaggag gaaccccaat gtgggaagaa atggttctat taaaattact
      121 acctttttta tcattaggcg tatgttttaa cttcccaata tttccaccac tctcatcaag
      181 aaatattttg tagttatgct gtgctatatt taatccgtga aatgatcttt ctaagtttga
      241 agttatcaca acaagtccct ccccaaagta ggtaattata ataaagatcc aaacactccc
      301 accacatacc ccttcgatct atccctttcc aacaactttg gttggcagag gtcgataagc
      361 gagcaggctt tgcagcgttt gctgtattct ggaggaggtg tggttccgct atctaagagc
      421 gaccgcactt cggcaatggt ggcgagggtt ttggtgcgta gttcggtgga aaaaatgatc
      481 ggcaaacggt ggcgagtttg catataccac aacgcccctt cgttaatcgt ctgctctgtc
      541 atttcttcca aacataaggc ttgggcacag agttggattt catcaatcgg atcaagtttg
      601 ggcttgccac gtttgtattc cactggtttt agctcgcctg tttttaggtc tcgctcaacc
      661 aaatccaaaa tgccgcttat gcctaatttt tcggctgcaa cgtgaaccgt tcgctcaaag
      721 cgaatccctt tgcgaacttc tggctcacca ctatctaccc gctcgtgcaa cgcttgacct
      781 tgtgcggtga gatagttttc tgcccacacc tgttcgttgt ggatcagcgc acattgacgt
      841 gggcagaagg catagtgttg caaagcggaa agcgaaattg accgcttgtc atcgccaaat
      901 tttggctgaa caagcggtaa aatttccgca gaattttgca aatcgcccat tacagtaatt
      961 cttcaacggt tacacccgtt aagccttcgg tttgtacgct gatacagtaa tcgtcatagt
     1021 ctttcgctgg cgtgtctttt tcaccgttga ttcgctcaac ttttaccgag tcaaacagtt
     1081 tgtgtgcagg ttggttgcct aattcgctgt cgtgtttaaa tacgatcagt ttacgagctg
     1141 ccatttcgcc tcgtgcggca gaacggtcgt gttcaaacat aagttgcaag gcttgccaaa
     1201 gtttttgtac atcttcatca gaaaagcccg ttttttcagc gagtttagct gaaataaagc
     1261 cgtgaacacg ataaagtgcg taaggcacga tatatttacg ccccatagtc cgttcttttt
     1321 caagatcttt ttcgttggtc actgccattc gtgtgatcga tacttctagc ggaataatcg
     1381 gatcgataga ttgagcgaac gccaattgca ctgggcctcg cacctgtccg ctgtttactt
     1441 cggtagtcat taccgcccca aaggtgcgaa tatcgaaaaa gtttttgcac atccaagcgg
     1501 taatttctcg ggctttagct tcctcttttg gtagtttttt cgcttccgat tcaatcccta
     1561 atgcttcata agcacgtttg ttttgtaaat tcagaacact tttttcttta acataaattt
     1621 cgtaacccgc ctcgttttca tagctcattt caataaaatt gcggattttg cgttttaggc
     1681 aaacatcggt gactaaacct ttactggttt caggatcaag gcgtggcata tttcctgcat
     1741 ctggatcacc atttgggtta ccgttggtta catcaaagaa aaaaacaaat tcatagcggt
     1801 tttgaataga catagtgttt ccttagtttt caatagactc agtggtttct tttttagcga
     1861 aatagctttg tttttggtgg taataaccaa tcgcaaaacg cccttgttca tcgatactta
     1921 aatggcgagg gaaattttcc ggcaagctgg caataatctc acctaaatcc ttatccagat
     1981 taaccgccat tccgccctta tcttttctca agcgagataa atggtgtttt gcaccgctta
     2041 ataagcgagg gaataccgaa aacggcacgg cagaagccga accataatag cggtcggcaa
     2101 tgccggcatt taattcgcct aatgcttggc tttggattct ttctaatact gcaaataacc
     2161 tgccgagcaa gtaagcttgg ttatcgcttt ctttatttaa gctcatagga actccttctt
     2221 taataaaacc ttttctaaat tttcgttgta agactgcttt catcaacgct actcgcaaac
     2281 cgttaatatc gccgtctgct cggattcgag tcactaactg tgaaagtaaa ctcatcggat
     2341 ataaatgacc gctaataact gcgcgagcca tttcacccgc caagactgga gaaatattct
     2401 cacttttacc taatgaagcg gtttgtaata atagtcgcca aatggaaggt ggtgttttcc
     2461 atgggcaagg ctcaagagcg agatcttgcc aatgctcgct gaggtttttt gccagttgcc
     2521 caaaggtggt atccagccaa aaacgtaccg aaatgcgagc tgcatttgga gcaagcccca
     2581 acacataaaa acgggtgttt tcagataatt ctggggaaat ttctgcaagc ggtcgtcctt
     2641 tgctgatttt ttgcaattct tcaaagattt tttggttttc ttgctcatca tctggaggcg
     2701 tcattaaagc agcaaaaaag ccttcagcag cttcagcttg ggtggtattg tctgcttctg
     2761 cccaaaagac agtgctggca tcaccaatag ttaaacgatg tttctcggtg cgtaacaaat
     2821 aatttaaagc agtagtgtag gcaaaggcgg cttgttcaga aacaggggca ttactacctt
     2881 gttccttgcc aaatgaagtg aaggattctt tattgaaaga gatgattgaa ccaccggaac
     2941 tttgcccacc aaatacccct ttaataggag gatgagttcg ttgaattggc gataatttgc
     3001 ctgaaattaa gcataaacct ttttcagcat tatcactttg atttatcaac aaacttgtcc
     3061 aaagggtttg tgcagcttct cgctgatgaa tataaccgct tgtgccgact aatttaaaca
     3121 cgacattcgc atcaagaatt tctcttgggc agattgattc ggcaaaatgt gtgggttgcc
     3181 attgttgcag gaaatttctt atcgccatta aaccttcatc attggaatct gcaagcaaat
     3241 ccaaatggta ctgtttaaat gcctcaaagg ttttctcggc gaaattgatg ggttgatctt
     3301 tggcggtggc tttatcagga ttactttcaa tgcctagcac ataagcggtt ttatcccaca
     3361 gaaaattggg cttaatgcca gacgtgcgtt tttcagggcg aggtacgctc atcaatttcg
     3421 gttttggttt cttatcttct gttaaatttg agatcacatt gaccaaattt ccctttgaat
     3481 ctaattctag tacccaaccg attttttctt cactgaaacc ataagaaggc actttagctt
     3541 cgcctgttaa gcgatcttct tgtgctgcaa ggcggtaata atagcgagtt aaggcggtaa
     3601 taatagcgag ttaaggcgga gagaatcatg atttgacctc ctctgcataa aatggtggca
     3661 catcaatcac gccatttttc atttccgcac ggaagaaacg aggttgatta ccgtgctcaa
     3721 aatcaatgtc gtgcaacatc cagcctaaat cccgatctcg ctcattttct gccaaaaaac
     3781 actcaggtaa cggttcatcg tcatcaatca aggcaaaatt tgcggcaaat tcacgcacgc
     3841 ccatacaagg ctgctggaaa cattgcccct ttttcgcacg gcgtttaaac atttcaatat
     3901 gcttggtgac ggtttccgcc tcgcctgcca ttttggtcag cactgcgtga gcttcgatca
     3961 cataaccgac atttttcagc acagtagcag cacgttgttg gcggtcgtct tcaatcacag
     4021 tatataaatc cgccactgtt ttacgcttca ttgcaccact gattttactg gcagaaattt
     4081 tactgcctaa ctcattacgg cgaacagact caaattgaat cggttgtaat acataaattt
     4141 tatcaatcac ccagcgaatt gccggcttcc aatgcaccgc agccaaaatc ccccgtgccg
     4201 cagacggcgt aatcacatca taagacaccc gttctacctt catttcagga cgggtaaaac
     4261 aagcataatc accccaaata tggagcctga ttttgtttgg cataatagaa tgctcctttt
     4321 aattatgtaa cacacacctc cccgaaggga ggtgaaattt ctttagctta tattataact
     4381 gctttggttt caacccacgc actcagtaaa atgcgaaaaa ttttatggct tattatatta
     4441 agcggtcgga tttacttaga aagttgcaaa gttatttgag tatttaaccg cttgtatttc
     4501 aaaaatagtc agaaaaataa cagcattcta ggtacaatat ttttctaaga acgaacttgt
     4561 ctccgcaatg cctctactgc gtttgacaca gcatttggtt tgggctcctg gtttgcccaa
     4621 tcagaccaga attggcgtgt agcactttct ggggctatat gcggtttagc aagtttgatt
     4681 cgtgtaggta atagaatcga atcgcctagc aataacgctt cgcctaaatc aagtaacggc
     4741 aatatatcag taattccaac catagattcc ggcaataaac gctttacaac actttgatct
     4801 tgaccatttg ttaatcgtaa aaccaagaaa ttattacatt gactcaaaat tgttcggctt
     4861 acatctgaag gacgttggct aacgaccaac aaagacacgc catattttct accttctttc
     4921 gcaatccgct caaaggcttc caatgcgcgt ttttccgctg cttccgctga atctcgaaca
     4981 gggagatata aatgtgcttc atcgcaaata atcgttagtg gatggcggga atctttatcc
     5041 atccaaaatt gaatgttgta taaaaggcgg gcaagaactc ccgtaacaat cggtaaaaca
     5101 tccgacggga cttccgaaaa atcaataatt tttatccctt tttcgctctc agaagcagaa
     5161 aacagttttg acaacatatt ttccagccac ccatagctgt tgcactctac tggcggttgg
     5221 aacataaaac cgcaacgtct gtcatctatt ttggctttca tccttcccat aaacctagac
     5281 aacttactat accaaggacc ttgctttgtt cctgaacctc cctctttagg taccatctca
     5341 gaattatctt tatctaaacg agctaacaat aattcaatag aatacggaat tggcgaatca
     5401 acagtaaacg tttccaaaac atcatttctt tcttccttat tcaatgtttg ctcttttaat
     5461 gcgcgaacat gctcagtaaa acgcgccgcc tgattcggag cattatcatc actgcgatct
     5521 aaaattaaag ccagcattta ttcccgattg agcagccaat agggaataaa taaactgcgt
     5581 tcatctgaac catccaaatc tcccggtcca gcaatacggt attgctgagc gatagcgttt
     5641 ttaccttcgc atagagtgct atattcaccg tgcatatcga atacaataag attagcagct
     5701 tttaaagctg ctgcacgttc caatattaat gcaactgacc agcttttacc ggaaccagta
     5761 ctacccaaaa tagcagcgtg ccgttgaaag aatttatctc cgtttgctat agctacagcc
     5821 gtttcatcag ccataaaatg acctaaagtc agccgttcat tttcttttac gttagcggac
     5881 aaaagattca taaataattg cagattgctg ccactaatat gaaagcaatc tctatcaatt
     5941 tgcggaaaac aatccgctcc ccgcttaaaa gtgttgctca aactaccatc aacagcttta
     6001 taagtaccga ttaatactgc cttgataaag tcatcctgac tttcacccag aggaatttca
     6061 ccctcattag atatttcttc tagcagcaat ttttcactga tagaacgcgt tacccgttcg
     6121 ataatgccga taaggtactc actagccgtt ctgccttgaa tcgcaatcag attacccaca
     6181 gcaatactag tcatttgttg atgctcttca acagaaatca atacacggct ggtatctact
     6241 gttacaaccc tgcccaaacg ggcattgtct ttaaaattca atgtttcatt tgccattctc
     6301 taaaatctct tttacaaaaa actcaacgtc ccaccaatga acattaggaa taaaagtttc
     6361 ttcttgcttg ctaaccaccc ttgttccagc cttatctcca tcaaaaatca gagccttaca
     6421 attcggagct tccttcacca cgtttctggc attttctgaa agtcctcttg tcagaagtag
     6481 tgttttcaca ccacttttaa ttttgcctgt caaatgtgtt tgaaggtggt catcattaaa
     6541 accatagccg atacataaaa ttgaagaagc agaatcaata gcttcatttg ctttttctcg
     6601 atgagcatca aatggttgtc catagccttt tttatacttc ccaacaccag gcgtaataat
     6661 taaaggctct tccactttac ctatacaact tgtcattgga acgtctccag ccataaacca
     6721 atctaaacta ccatgcggtt taaagatttt gatatgatct cgttgacatc ctcccctgcc
     6781 taaaggcagg ggattcctac tagctcccac agcaagctgt gggctactct cggtgggttt
     6841 ctactgctga tctctattga gattcacttc atagacgctt cgggtatgtc ctaccctgat
     6901 atttattatg cttggactat tgcttgccca cgtgtaagaa cattcattgc tcccactaca
     6961 tcggcatttt ccgtatagcc acattctacg cattcaaaat tttcctgtgt ttggcgattt
     7021 tcttttgctg tatagttgca acaagggcaa gtacgactgg tattttgtgg aggaactgct
     7081 agcaaaaatc cgcctaacca ttgcgttttg tagtccagtt gtcgtctaaa ttcaaaccaa
     7141 gactggtcta atatcactcg gtttaagcct gatttctgtt tcacattttt gccgtgtact
     7201 tccgctgtgc ctttggctga tttggacata ttcgccactt gcaaatcttc aacatagatc
     7261 atcgcgtggt ttttgctgat ttgcgttgag attttatgca ggaaatcttt tcggcagttg
     7321 gcgattttgt gatgtaactt gccgatttta tctttcagtt tttgccagtt tttactgaac
     7381 ttcactttat tttttagctg tttttgcagt tttgccaatt ttcctttgtg ggttttaaac
     7441 gcatttaacg gctcaaaaaa ttctccattg gaaagggttg caaaacgagc aatgcccata
     7501 tcaatgccga tttctccgcc tttatgcgtg ggaatttcct gtttaaattc cgtttgaatg
     7561 ctcacaaaaa agcgtccgca tttcattgaa acggtgacat tttttacttc cccaacaatt
     7621 tcacgactgt tgcgataacg cacccaaccg attttcggca gatacaagcg gtcgtttttc
     7681 tgctcgattt tgcaaccttg cggaaaacgg aaactctctt ttacgccttt tttcttgaat
     7741 ttgggcaaat ccgcacgctt ttgaaagaag tttttaaacg cactttcaag gtcttttaac
     7801 gactgttgaa gcacttgtga atggcaatct ttaagccata ccaattcttt tttccattgc
     7861 ggaagcaagt tggcgagctt ggtataactg aatttgtgat ggttatcttg ttcgtactgc
     7921 tcattttgcc acgccaatgc cttgttaaac acaaagcgag aacagccgca aaactgcttc
     7981 attttgcgaa cttgttcccc atttggtctg atttcaaatt taaaggcttt acgtagtaac
     8041 attgcacgaa ttagaataca aaaattgtgc ttattctaca cttggcctat gaaaaaagaa
     8101 acagagatta gacgtggtcg ccacgttgtt tttaacttac acgttcattt agttttcgtg
     8161 actaaatatc gcagggaagt ttttactcaa gcaattttga acgacttaca ctcaattttt
     8221 gcaacgattt gtgctgattt tgaagccaca ttagtggaat ttgatggtga agatgatcac
     8281 gttcatctac ttgtggaata tccgcctaaa gtcgctattt ctcatcttgt aaacagttta
     8341 aaaggcgttt cgagccgaat gattagaaag aaaaactatc cgagcattcg caaaaaatta
     8401 tggggaaatc aactttggtc accgtcttac tttgctggta gttgtggtgg tgcaccaata
     8461 tcgattattc gccaatatat cgagcaacaa caaacacctg attagttaga aatttgaaac
     8521 ggctttgccg tttatacctt atatccacgc cctaaaggac gtggt
//
LOCUS       DANLZD010000111         8519 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.111, whole genome shotgun sequence.
ACCESSION   DANLZD010000111 DANLZD010000000
VERSION     DANLZD010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8519
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.111"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            26..1831
                     /locus_tag="PXE26_001923"
     CDS             26..1831
                     /locus_tag="PXE26_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HDL5594484.1"
                     /translation="MLSKLQRFTLMIKSTIIKHPLEILFVTYVTILLINNVSDYELIK
                     RFQNLIALFPICFILLYLIRDTKAYWLFAPIPIAIVFFFGQINLTLLEDSRYWATIFC
                     VFLCLISQYWYKNNHYFVAGTTNKLVNIVFATVLSGIIFATLSAITIAIIALFDLNKQ
                     NNFHIFEKFGIFSSFWAFPVLFLTLEQQTTNDSRYLNRISEMLLNWILSPALIIYTAI
                     IYAYVIFIAAKGQMPDGVVANVALPYLAFGLAIQAVQLLLKNAKWQWFYSHFTYLALL
                     PLTLIWYAIYIRFSHYGLTEARIYLVIGTITLSICYTLLLFKQLAQYRLFSAVSIAII
                     LISVFILDPKTVALKDQTKRLDNYLLKHKLLDVNNKISTKAVLKYQESLNENRDEAEY
                     FYSMLHYVARGMPAAQFKEKYGVNSSYDLMSEIRERNTDPRYFEATNSELVRLTKADM
                     ANAREYITFSSQLYRPNSFSHQKIENKLCQKLLSQGYYFEGNILNIEYQYSETAQDCS
                     SITQDPTEFVIYFKGLGTTIEFNINDILKKIFAKHQLSITQQHKNEVLEKIKGDLLKM
                     DLGNSVLGLKHIELRFEDNIGYIVESISTQYIMLK"
     gene            complement(1874..4903)
                     /locus_tag="PXE26_001924"
     CDS             complement(1874..4903)
                     /locus_tag="PXE26_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4981 domain-containing protein"
                     /protein_id="HDL5594485.1"
                     /translation="MSLPNYYQDPSVLHLNTTLHHAYFIPFAKGQTPNQLEREQSELF
                     TLLNGDWKFNFYPSPHDLPEDFLNTKFTHQIPVPSNWQTQGFDAHQYTNINYPIPFDP
                     PYVPHQNPCGVYQREITFNPKPNKRYLLNFEGVDSCLFVYVNGEFVGYGQISHSTNEF
                     DITKQLKQGKNSLVVVVLKWCDGSYLEDQDKFRMSGIFRDVYILEREQNYLQDFFIRY
                     QLNADLSKAELKVETQFSTYTEAVHFQLFDPENRLVCEQTSGDFCQEICNLCLWNAED
                     PTLYTLCLSYQNEIIEQKIGFRQIRVENGVMLFNNAPIKFKGVNRHDSDPKTGYSISR
                     EQALVDLRLMKAHNINAIRTAHYPNAPWFSELCDQLGFYLIAESDLESHGSSAVYIES
                     PENSIFLNVPNPNKQEEIRQQAVDNFCYFARDPLFKQAILDRNIANVERDKNRTSVII
                     WSLGNESGFGENFEVAARWVKQRDPSRLTHYEGSIYQHSAHQNDLSNLDLYSEMYPST
                     ERLEEYFSDSANHKPFILCEYSHAMGNSSGDMEDYWQTFQRYSGACGGFVWEWCDHAP
                     LLPNSELSAEQKTEKYGYGGDFGETLHDGNFCMDGLVSQQRVPHSNLLEVKNVNRPVR
                     AELKAGKIWLKNQLDFSDLADYLTVHYCFSENGETTLQGQCLVNCQPNQTACLPLTLP
                     EPNGKLQLLTLDYSLNESTALLEKGHHLGFDQITLHQAMVTPALNPRPQAVIFVQDFA
                     NEWRIQQGDYRYTFDKLKGIFSRIEKNGEAVIEQPLDFNIWRAPTDNDRLIREFWKKA
                     GYDNCYTRAYHTELMQDKNGVNITAECGIVATAQSRILTLKVNYHLAPNGEMTIQVQA
                     TRPAHLPFLPRFGLRFFLNKRNNQVSYFGYGEQESYIDKYHLAKLGAYQTSARENHTD
                     YLKPQENGSHFGTHYVQANGITVTSPQPFSFNLSPYTQEELTTKSHSYDLVESPSTVL
                     CVDYKMSGIGSNSCGPNLKPQYRLNETNFEWLLKLSF"
     gene            5081..5938
                     /gene="menB"
                     /locus_tag="PXE26_001925"
     CDS             5081..5938
                     /gene="menB"
                     /locus_tag="PXE26_001925"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005723289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HDL5594486.1"
                     /translation="MLYPSEEFLYAPVEWVDHSEGYTDIRYHKSKDGIAKITINRPEV
                     RNAFRPQTVKEMIEAFSDARFDEKIGVIVLTGEGEYAFCAGGDQKVRGDYGGYKDESG
                     VHHLNVLDFQRDIRTCPKPVVAMVAGYAIGGGHVLHMLCDLTIAADNAKFGQTGPKVG
                     SFDGGWGASYMARLVGQKKAREIWFLCRQYNAQEALDMGLINTVVPYADLEKETVRWC
                     REMLQNSPIALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNEKREP
                     DFSKFRRNP"
     gene            6021..8423
                     /gene="mrcB"
                     /locus_tag="PXE26_001926"
     CDS             6021..8423
                     /gene="mrcB"
                     /locus_tag="PXE26_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1B"
                     /protein_id="HDL5594487.1"
                     /translation="MSDVELNEQSEQEPEQKPKKRNYFLSTLFKIGVIGACSMAFYGI
                     YLDGKIRSKMDGQIWELPAEVYARIESIKIEDNLTLEQTKQALLDNGYRQVSQVATPG
                     DFKIEENQLVLLRRAFPFPETPESQRVLRLTFKQDKLTYIEDLVQGKLIEEFRLDPKL
                     LALLHSDSDEERQALRLQQYPRLLIESLILTEDRRFYQHDGISPIGIARALITNYQAG
                     RTVQGGSTLTQQLVKNLFLSNERSLVRKVNEALMSVILDFRYDKNRILETYLNEIYLG
                     QNGSYQIHGFALASQFYFGRPIQEISLDQIALLVGMVKGPSLYNPWRNPQGAVERRNV
                     VLRLLLDHQVINQELYALLSSRPLNIREKGTIYREQPAFMQALTIDLKNELGEIKSAQ
                     LSGTKIFTTLDRKQQRSAEQAVITGLEDLESKNKKVSDLQSAIVVAEYRTGKVRAIVG
                     DRLTQFAGFNRAIQSKRQIGSLVKPSVYAIALAQPELFRLNTPIQNKQISIKVGSTYW
                     TPRNYDRSFSGSVMLMDALVRSLNIPTVNIGMKVGLKKVIAKQKEMGWDNAEIPPYPS
                     TLLGSYSISPYDVTRSYQVIANEGLKTPLTTIEAIISHNGEMFYQRDSGKVSEQVLPP
                     EAAVQTMYAMQQVVERGTARSLQNDFAKLKLAGKTGTTNNARDTWFVGIDGEHVTTVW
                     LGKDNNGDTNLTGSSGALYVYKQYLERALPQAYRLPKLNTMQWVGINSYGSWNCDSGR
                     QIPVWRDKGQRYCTSAGNVVATEKPSVWDALSLKKENIEAKAEEAEGKQPIPTEEVAP
                     IE"
BASE COUNT         2513 a         1698 c         1830 g         2478 t
ORIGIN      
        1 tcttttcata ggcaggagat ctattatgct aagtaagcta caacgcttta ccttaatgat
       61 aaaaagcacc atcattaagc atccactgga aattttattc gttacttacg tcacgatttt
      121 acttatcaat aatgtgagcg actacgaatt aatcaaacgc tttcaaaatc taattgctct
      181 ttttcctatt tgctttattt tgctttacct gatacgcgat accaaagctt attggctatt
      241 cgctccgatt ccgatagcaa tcgtcttttt ctttggtcaa attaatttaa cattattgga
      301 agattctcgt tattgggcta ccatattttg tgtattcctt tgtttgatca gtcaatattg
      361 gtacaaaaac aaccattatt ttgtagccgg aacaactaat aaattagtta acattgtctt
      421 tgctacagtt ttatctggca ttatttttgc aacattaagc gctattacca tagccattat
      481 tgctttattt gatttaaata aacaaaacaa ctttcatatt tttgaaaaat ttggcatttt
      541 ttctagtttt tgggcattcc ctgttttatt tttaactctt gaacaacaga ctaccaatga
      601 ttctagatat ctaaaccgca ttagtgaaat gttactaaac tggattttgt ctccggcatt
      661 aattatctat actgcaatta tttatgctta tgtaattttt attgcggcta aggggcaaat
      721 gccagatggg gttgttgcaa acgtagcgct tccctattta gctttcggcc tagctataca
      781 agcggtgcaa ttattactaa aaaatgcaaa atggcagtgg ttttattctc actttaccta
      841 tttagcactt ttgccgttaa cattaatttg gtatgccatc tatattcgtt tcagccatta
      901 tggcttaact gaagcccgta tttatttagt gattggcaca ataaccttat ctatttgcta
      961 taccttatta ctatttaaac agttggcgca atatcgtctc ttttctgcag tgtcgatagc
     1021 aattatttta atttcagtgt ttattttaga tccgaaaaca gttgcgctta aagatcaaac
     1081 caagcggttg gacaactatt tgctaaaaca caaattatta gatgtaaata acaaaatcag
     1141 cacaaaagct gtacttaaat accaagaatc attaaatgaa aaccgagatg aagccgaata
     1201 tttttattca atgctccact atgttgccag aggaatgcct gctgcacaat ttaaagagaa
     1261 atatggcgta aattcaagct acgatttaat gagtgaaata agagaaagaa atactgaccc
     1321 acgttatttt gaagctacta attctgagct ggttcgctta actaaagcag atatggcaaa
     1381 tgctcgtgaa tatattacat ttagtagcca attatatcgg cctaattcat tttcccatca
     1441 aaaaatagaa aataagctat gccaaaaact cctttctcaa ggttactatt ttgagggaaa
     1501 tatattaaat attgagtatc aatactcaga aacggctcaa gactgctctt caataacaca
     1561 agatcctact gaatttgtta tctactttaa aggacttggg actactattg aatttaacat
     1621 taacgatatt ttgaaaaaaa tctttgctaa acatcagtta tctattaccc agcaacacaa
     1681 aaatgaggtt ttagaaaaga ttaaaggcga tttactcaaa atggatttag gaaattcagt
     1741 acttgggctt aagcatattg agttaagatt tgaagacaat atcggctata tagtagaaag
     1801 tattagtaca caatatatta tgctgaaata aaaggagatg ctcgttcaat taaatttgaa
     1861 cgagcatttt tcgttaaaaa ctcaatttaa gcagccactc aaaattagtc tcatttaacc
     1921 gatattgcgg tttcaaattc gggccgcaag agtttgagcc aatgccgctc attttgtaat
     1981 cgacacacag cacggtggaa gggctttcta ccaaatcata actgtggctt ttagtggtta
     2041 gctcttcctg tgtgtaaggc gaaagattaa aactaaacgg ctgtggagaa gtaacagtta
     2101 tcccatttgc ttgcacataa tgcgtaccga aatggctgcc gttttcctgc ggtttgagat
     2161 aatcggtatg attttctcgg gcgctggttt gataagctcc gagtttcgcc aaatggtatt
     2221 tgtcgatata actctcctgc tcgccatagc caaaatagct cacttggtta ttccgtttat
     2281 tcaagaaaaa ccgcaagcca aagcgaggta aaaacggcaa atgagcgggg cgggttgcct
     2341 gaacctgaat cgtcatttcg ccattcgggg caagatgata attcactttc agggttaaaa
     2401 tccgactttg agcggttgcc acaatgccac attcggcagt aatgtttacg ccgtttttat
     2461 cttgcatcag ttcggtatga tacgccctgg tgtaacagtt atcgtagccg gcttttttcc
     2521 aaaactcacg aattaagcgg tcgttatcgg ttggggctcg ccaaatattg aaatccaacg
     2581 gttgctcaat tactgcctcg ccgtttttct caatccggct gaaaatgcct ttgagtttat
     2641 cgaaagtgta gcgatagtcg ccctgttgaa tccgccattc atttgcaaaa tcttgcacaa
     2701 aaatgaccgc ttgcgggcgt ggattaagtg ctggagtgac catcgcttga tgcagcgtga
     2761 tttggtcaaa gcctaagtga tgcccttttt ccaacagagc cgtgctttca tttaaagaat
     2821 aatcaagggt taaaagttgc aatttgccgt ttggttcggg cagcgttagc ggcaaacaag
     2881 cggtctgatt tggctgacaa tttaccaaac attgtccctg cagggtggtt tcgccgtttt
     2941 cgctgaaaca gtaatgcacg gtcagataat cagctaagtc gctgaaatcc aactgatttt
     3001 tcagccaaat tttgcccgct tttaactcag ctcgcaccgg gcgattcaca tttttcactt
     3061 ctaacaaatt agagtgtggc acacgctgtt gggaaaccaa gccgtccata cagaaattgc
     3121 catcgtgcaa ggtttcgccg aaatcaccgc catagccgta tttttcggtc ttctgttcgg
     3181 cacttagctc agagttgggg agcagaggag catggtcgca ccattcccac acaaagccac
     3241 cgcacgcacc gctgtagcgt tggaaggttt gccaataatc ttccatatca ccactcgaat
     3301 tgcccatcgc gtgagaatat tcacacaaaa taaaaggttt gtggttggca gagtcggaaa
     3361 aatattcctc taaccgctcg gtgcttgggt acatctcgct gtataaatcg aggtttgaaa
     3421 gatcgttttg atgtgccgaa tgttggtaaa tcgaaccttc gtagtgagtt aaacggcttg
     3481 gatcccgttg ttttacccaa cgggctgcga cttcaaaatt ttcaccaaag ccggattcgt
     3541 taccaagtga ccaaataatg accgaagtgc ggtttttgtc tcgctccaca ttggcaatgt
     3601 tgcgatctaa aatcgcctgt ttgaacagcg gatctcttgc aaaataacag aaattatcga
     3661 ccgcttgttg gcgaatttct tcctgtttgt tcgggtttgg cacattcagg aaaatgctgt
     3721 tttccggact ttcaatatac actgcactgg agccgtgaga ttcaagatca ctttcggcaa
     3781 tcagataaaa accgagctga tcgcacaatt cactaaacca cggagcgttc gggtaatggg
     3841 cggtgcgaat agcgttgatg ttatgggctt tcattaagcg taaatccacc aacgcttgct
     3901 cacggctaat gctgtagccg gttttcgggt cggaatcgtg gcggtttacc cctttaaatt
     3961 taatcggggc gttgttgaat agcatcacgc cattttccac acgaatctga cgaaagccga
     4021 ttttttgctc aataatttcg ttttggtagc tcaagcatag cgtgtagagt gtcggatctt
     4081 ccgcattcca caaacacaaa ttgcaaattt cttggcaaaa atcaccgctt gtttgctcgc
     4141 agactaagcg gttttcaggg tcgaaaagtt gaaaatgcac agcttcggtg taggtggaaa
     4201 attgtgtttc caccttgagt tctgcctttg aaagatcagc gtttaactgg tagcggataa
     4261 agaaatcttg caggtagttt tgctcacgtt ccaaaatata aacatcacgg aaaatgcctg
     4321 acattcggaa tttgtcttga tcttccaaat aactgccgtc acaccatttt agcaccacca
     4381 cgacgaggct gtttttgccc tgtttaagct gtttggtgat gtcaaattca ttggtgctgt
     4441 ggctgatttg cccgtagccg acaaattcgc cgtttacata aacaaacagg cacgaatcta
     4501 cgccctcaaa atttagcaaa tagcgtttgt taggcttggg gttaaacgtg atttcacgct
     4561 gatacacccc gcaagggttt tggtgtggca cataaggcgg atcaaacgga atcgggtagt
     4621 tgatgttagt gtattgatgg gcatcaaagc cttgagtttg ccagttagac ggcacgggga
     4681 tttggtgggt aaatttggtg ttgaggaaat cctccggcag atcgtgcgga cttggataga
     4741 aattaaactt ccaatcgcca tttagcaaag taaataactc agattgttcc cgttccaact
     4801 gattcggcgt ttgcccttta gcaaaaggaa taaaataagc gtggtgtagc gtggtattaa
     4861 ggtgcaacac actcgggtct tggtagtaat tcggtaacga cataaaagcc ctatgatcaa
     4921 aaagatataa atacgaatac actttaattc tcttataaaa tagggcaatc aactatgtga
     4981 aaaattgtga ggcggatcac aaaataattt cctcaccttt ttccttcgat tccgttataa
     5041 tcacaagaat tttttatgtc atttttcaag gaatttacca atgttatatc caagcgaaga
     5101 atttttatat gcaccggttg agtgggttga tcacagcgaa ggttacaccg atattcgtta
     5161 ccataaatca aaagacggta tcgctaaaat caccattaat cgtccggaag tgcgtaatgc
     5221 tttccgtccg caaacggtaa aagagatgat tgaagccttt tctgatgccc gttttgatga
     5281 aaaaatcggc gtcatcgtat taaccggtga aggcgaatat gcgttctgtg ccggcggcga
     5341 ccaaaaagtg cgtggcgatt acggcggcta caaagatgaa agcggtgtgc atcacttaaa
     5401 tgtgttggat ttccaacgtg atattcgtac ctgcccgaaa ccggtggtgg caatggttgc
     5461 cggctatgcg attggtggtg gacacgtttt acatatgtta tgtgatttaa ccattgccgc
     5521 tgacaatgca aaattcggtc aaaccggccc gaaagtgggg tcatttgacg gcggttgggg
     5581 tgcaagctat atggcacgtt tagtcggtca gaaaaaagcg cgtgaaattt ggttcttatg
     5641 ccgtcaatat aatgcacaag aagcgttaga tatgggctta atcaataccg ttgtgcctta
     5701 tgctgattta gaaaaagaga ctgtgcgttg gtgtcgcgaa atgctacaaa acagcccgat
     5761 tgccttacgt tgcttaaaag cagcattgaa tgcagattgt gacggtcagg ctggcctgca
     5821 agagcttgct ggtaatgcaa caatgttgtt ctatatgaca gaagaagggc aagaaggacg
     5881 caatgcgttc aacgagaaac gtgagccgga cttcagcaaa ttccgccgca atccataatt
     5941 gacggcaaat acaagcggtt cgattttgca aaaaatttgc aaaaatcgac cgcttacctt
     6001 ttctaattta agttaatttt atgtcagatg ttgagttaaa cgagcagagc gagcaagagc
     6061 ctgagcaaaa accgaaaaag cgaaactatt tcctttcaac cttattcaaa atcggggtga
     6121 taggagcttg cagtatggct ttttacggca tttatttaga cggtaaaatc cgtagcaaaa
     6181 tggatgggca gatatgggaa ttaccagctg aggtgtatgc tcgtattgaa agcattaaaa
     6241 ttgaagacaa cttaacgctt gagcaaacca aacaagcgtt gctggataac ggctatcgtc
     6301 aagtttctca agttgcgaca ccaggcgatt tcaaaattga agaaaatcag ctggtgttgc
     6361 tacgccgagc tttcccgttt ccagaaacac cggaatcgca acgagtgctt cgtttaactt
     6421 tcaaacaaga taaattaact tatattgaag atttggtgca gggtaagttg atcgaggagt
     6481 tccgcttgga tccgaaatta ctggcgttac tgcattccga tagcgatgaa gaacgtcaag
     6541 cattacgctt acaacaatac cctcgcttgt taattgagtc actgatttta accgaagatc
     6601 gccgctttta tcagcacgat gggattagcc caatcggtat tgcccgtgct ttaatcacta
     6661 actaccaagc tggcagaaca gtgcagggtg gcagtacctt aacgcaacag ttagtgaaaa
     6721 acttgttctt aagtaatgaa agatcgttgg tgcgtaaggt aaatgaagcg ttaatgtcgg
     6781 tgattttaga cttccgttac gataaaaacc gcattttaga aacctatctc aacgaaattt
     6841 atttagggca gaacggtagc taccaaattc acggttttgc attggcaagc caattctatt
     6901 ttggtcgtcc gatccaagag attagcttag accaaattgc gttattggtg ggaatggtaa
     6961 aaggtccatc actgtataac ccgtggcgaa atccgcaagg tgcggtagag cgacgtaatg
     7021 tggtgttgcg attattgctg gatcatcaag tgatcaatca agaactttac gctctgttaa
     7081 gctcccgccc gcttaatatt cgtgaaaaag gcacgattta ccgtgagcaa cctgccttta
     7141 tgcaggcatt aaccattgat ttgaaaaatg agttaggcga aattaagtca gctcaacttt
     7201 ccggtactaa aatttttacg acccttgacc gtaaacagca acgttcagcc gaacaagcag
     7261 tgattaccgg tttggaagat ctggaaagta aaaataaaaa agtcagcgat ttgcaatcgg
     7321 ctattgtcgt ggcggaatac cgcacaggta aagtgagggc gatagtagga gaccgcttaa
     7381 cccaatttgc cggctttaac cgtgcgattc agtcaaaacg ccaaatcggt tctttagtca
     7441 aaccatcggt ttatgcgatt gccttggcac agcctgaatt attccgttta aatacaccga
     7501 tccaaaataa acaaatttca attaaggttg gttcaaccta ctggacaccc cgtaactacg
     7561 accgcagttt tagtggctcg gtgatgttaa tggacgcctt agtccgctct ctgaatattc
     7621 caacggtgaa tattggtatg aaagttggct taaaaaaagt cattgccaaa caaaaagaga
     7681 tgggctggga taatgcggaa attccgcctt acccatcaac cttgctaggt tcatattcga
     7741 tctcgcctta cgatgtaacc cgctcttatc aagtaattgc caacgaaggg ctgaaaacac
     7801 cattaaccac cattgaggcg attatttcgc acaatggcga aatgttctat cagcgagata
     7861 gcggcaaagt gagcgagcag gtgcttccac cggaagctgc ggttcaaaca atgtatgcga
     7921 tgcaacaggt tgtggaacga ggtacggctc gtagcttaca aaacgatttt gccaaactga
     7981 aattagccgg caaaaccggt acaaccaata acgctcgaga tacttggttt gtgggaattg
     8041 atggcgaaca cgtcacaacc gtctggctgg gtaaagataa caatggggat accaacctca
     8101 ccggttcaag tggtgcattg tatgtgtata agcaatatct tgagagagcc ttgcctcagg
     8161 cgtatagatt accgaaactt aatacgatgc aatgggtggg gattaatagc tatggtagct
     8221 ggaattgcga tagtggcaga caaattccag tttggcgaga taaagggcaa cgttattgta
     8281 ccagtgcagg taatgtagtg gctacagaaa aaccaagtgt ttgggatgca ctttcgctga
     8341 aaaaagaaaa tatcgaggct aaagcagaag aagctgaagg gaagcaacca atccctactg
     8401 aagaagttgc accaattgaa taaaaataaa tttgatagcc attatcattc aagatacaca
     8461 agctgataga ttctacctat aaaaagtata tattataact atttgctagt tttcatttt
//
LOCUS       DANLZD010000112         8286 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.112, whole genome shotgun sequence.
ACCESSION   DANLZD010000112 DANLZD010000000
VERSION     DANLZD010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8286)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8286)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8286
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.112"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(373..2043)
                     /gene="glnS"
                     /locus_tag="PXE26_001927"
     CDS             complement(373..2043)
                     /gene="glnS"
                     /locus_tag="PXE26_001927"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HDL5594488.1"
                     /translation="MSEEILTAETGTRANFITHIIDEDLASGKHNNVYTRFPPEPNGY
                     LHIGHAKSICLNFGIAQDYNGLCNLRFDDTNPVKEDVEYVDSIKQDVEWLGFKWEGEP
                     RYASDYFDQLYGYAIELINKGLAYVDELSPDEMREYRGTLTEPGKNSPYRDRSVEENL
                     ALFEKMKNGEFAEGKACLRAKIDMASPFIVMRDPVLYRVKFAHHHQTGDKWCIYPMYD
                     FTHCISDAIERITHSLCTLEFQDNRRLYDWVLDNISIERPLPHQYEFSRLNLEGTLTS
                     KRKLLKLVTDGIVDGWNDPRMPTISGLRRRGYTPASLREFCRRIGVTKQDNVVEYSAL
                     EACIREDLNENAPRAMAVINPVRVVIENFGEKEILKAPNHPNRPELGERDLPFTREIY
                     IDEADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDASGRISTIFCTYDPDTLGK
                     NPADGRKVKGVIHWVSAEDNKPAEFRIYDRLFTVPNPGAEEDINAVLNPESLVVKHGF
                     VESSLAHAKPEQDYQFEREGYYCLDSKDGSADNLVFNLTVSLKESVAF"
     gene            complement(2204..2647)
                     /locus_tag="PXE26_001928"
     CDS             complement(2204..2647)
                     /locus_tag="PXE26_001928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HDL5594489.1"
                     /translation="MNLQQIQDRLALKDLVDTFSNLADEKKVAEQMPLFTQDAVVNTY
                     IGGKLVFEMHGVAEIEQVFTTFLTPFHSVYHLNGQHTVPFIDENNATAINYCAVKLVE
                     TKEGKEILHDHSVRYADTYVKQEGKWRIAKRIANFMISESREIRQ"
     gene            complement(2698..3273)
                     /locus_tag="PXE26_001929"
     CDS             complement(2698..3273)
                     /locus_tag="PXE26_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HDL5594490.1"
                     /translation="MKQILILGASGSLANVVIPELLKDNNVQLTLFARRPQSVAKFET
                     ERVKIVQGDVLDFHALTQAMQGVDAVYAGLAGDLKAMAGNVVNAMNEAQVKRLVWISS
                     MGIYGETGEDHGAILEPYRQSAAVIEASELDYTVVRPGWFTNGSEVQYQLTHKGEPFK
                     GHSVSRKSIADFVARILRENSEIRESVGIAA"
     gene            3380..4270
                     /locus_tag="PXE26_001930"
     CDS             3380..4270
                     /locus_tag="PXE26_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5594491.1"
                     /translation="MKENLNDLRAFLLVAQTSSFTKAAAQMGVSQSALSHSIRGIEER
                     LQIKLFHRTTRSISTTEAGERLYQRLLPLFDEIDQEVNGLSEFRNALKGGLRINGNEH
                     VFRDVLADKFAEFVKRYPEVALELVAEDRFVDIVAERFDAGIRLGADVAKDMIALRIS
                     PDVKMTAAASPNYLAQHGTPKTPFDLTEHHCLKHRLATLGGILAWEFRDPITKKIVKF
                     QPQGNLTANNGFLLQHYAKQGLGILWSPQDSIQTELDNGSLVPILTDWAMQYEGYHLY
                     YPNRRQNSPLLKALIDVLRG"
     gene            complement(4337..4903)
                     /gene="efp"
                     /locus_tag="PXE26_001931"
     CDS             complement(4337..4903)
                     /gene="efp"
                     /locus_tag="PXE26_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HDL5594492.1"
                     /translation="MASYSTNDFKKGLKFIQDGEPCVIVENEFVKPGKGQAFTRTKIR
                     KLISGKVLEINFKSGTSVEAADVVDSNYNYSYSDGDFWYFMHPETFEQISVDEKALGD
                     NVKWLVDNAECIVTLWNGSAIAVTPPNFVELEIVETDPGLKGDTAGTGGKPATLSTGA
                     VVNVPLFVQIGEVIRVDTRSGEYVSRVK"
     gene            5070..5639
                     /locus_tag="PXE26_001932"
     CDS             5070..5639
                     /locus_tag="PXE26_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594493.1"
                     /translation="MKKLITLSAILAVSVATVAEAKRGGGSFRSVSPSKAVATKPVAS
                     QKSTTNQQTQQKDATFANTPNSATAQPQVRQGSTMANVAMGAAAGYILGDMMSSNAHA
                     NQPSQPADANAQAVNSAQNVANGAVPAIAEFKSIGGQIDPFLVEKTDGYRRYCISGVQ
                     YLVAAQGVQTSPTVMVNPNGTPLQCNLIP"
     gene            5693..6685
                     /gene="epmB"
                     /locus_tag="PXE26_001933"
     CDS             5693..6685
                     /gene="epmB"
                     /locus_tag="PXE26_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HDL5594494.1"
                     /translation="MQPIQIKPLWLTELAQAFNNPIDLLQFLELNPNDFEGDIAARKL
                     FALRVPRMFAEKMEKGNPNDPLFLQAMSLQAEFIEAEGFVVDPLEEQQSPAPNILHKY
                     HNRLLFMLKNSCAINCRYCFRRHFPYEEVKSGKAVWQQGLTYIAEHPELEEVILSGGD
                     PLMAKDQDLDWILTQLEQISHIKTLRIHSRLPVVIPNRITTELCERLSKSRLNVVLVT
                     HINHANEIDAVFANKMAQLKKAGVVLLNQSVMLKGVNDNAQTLKRLSDKLFEYGILPY
                     YLHLFDKVAGASHFYIEDEQAGEIYRELQRITSGYLVPKLAREIAKEPNKILKG"
     gene            complement(6785..8188)
                     /gene="asnS"
                     /locus_tag="PXE26_001934"
     CDS             complement(6785..8188)
                     /gene="asnS"
                     /locus_tag="PXE26_001934"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012054399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HDL5594495.1"
                     /translation="MSKFPTVSEILSGKIAVGEEATVRGWVRTRRDSKAGLSFLSVYD
                     GSCFDPIQAIINNDLPNYNAEVLHLTAGCSVVVTGKVVESPAEGQAVELQASKVEVLG
                     WVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHCLAQAIHRFFHEQGFYW
                     VATPVITASDTEGAGEMFRVSTLDLENLPRGENGKVDFNQDFFGKESFLTVSGQLNAE
                     TYACALSKVYTFGPTFRAENSNTTRHLAEFWMMEPEVAFADLNDNAKLAEDMLKYVFK
                     AVLAERKDDMEFFVKHVDKEAISRLENFINSPFAQVDYTDAIEILLKSGKEFEFPVSW
                     GIDLSSEHERFLAEEHFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEII
                     GGSQREERLEVLDQRMNEMGLNPEDYWWYRDLRKYGTVPHSGFGLGFERLIVYVTGLQ
                     NIRDVIPFPRAPRNANF"
BASE COUNT         2374 a         1782 c         1721 g         2409 t
ORIGIN      
        1 cttatctatt cttcgagaag acaatgctat cataaaagag catcactttt ggtttccaaa
       61 gattatagaa agctcaaata atacactacc tcataattta aaatgaaacg tttcaattgg
      121 aaaaagtgga ttttgtgact gagatcacaa atttaaacat tggtctgtat ttttgagaga
      181 ttttgtttga aactgccggc aaattcgctt aaccttaagg taacaagaat aagtgttgta
      241 cctagcaacc taacacataa atttgctttc cgagtggccc caagaattgg ggcttttttt
      301 atgcttgatg agtcgttttg agagtaaaaa aataccagca tatttgctgg tatttgaatg
      361 aagagagtta gattagaacg ctacgctttc ttttaagctg acagttaagt taaatacaag
      421 gttgtctgcc gaaccatctt tgctgtctaa gcagtagtaa ccttcacgct cgaattggta
      481 gtcttgttcc ggtttggcgt gagctaaact tgactcaaca aaaccatgct taaccactaa
      541 tgattcagga tttagcaccg cattgatgtc ttcttccgcc cccgggtttg gtactgtaaa
      601 taggcggtcg taaatgcgga actctgccgg tttgttatct tcagcagata cccaatgaat
      661 cacgcctttt actttgcgac catcagccgg atttttgccc aatgtatccg ggtcgtatgt
      721 gcaaaaaata gttgaaattc gaccgcttgc atctttttcc acacgctcag ctttaatcac
      781 ataggcattg cgtaaacgaa cttctttgcc taagactaaa cgtttatatt gcttattggc
      841 ttcttcacgg aagtcggctt catcaatata aatctcacgg gtgaacggta aatcacgctc
      901 gccaagctct ggacgatttg ggtgattagg ggcttttaat atttcctttt caccgaagtt
      961 ttcaatcacc actcgaaccg ggttaatcac cgccatcgcg cgtggtgcgt tttcatttaa
     1021 gtcttcacga atgcacgctt caagggcaga gtattccacc acgttatctt gcttggttac
     1081 cccaatacgg cgacaaaatt cacgtaaaga cgctggggta taaccacggc ggcgtaagcc
     1141 ggaaatggtt ggcatacgag ggtcattcca accatcaaca atgccgtctg tgactaattt
     1201 taataattta cgcttagagg ttaaagtacc ttctaaattt aaacgtgaaa attcgtattg
     1261 gtgcggtaac ggtctttcaa tcgaaatatt gtccagcacc caatcatata agcggcggtt
     1321 atcttggaac tctagcgtac atagcgagtg agtgattcgc tcaatcgcat cggaaatgca
     1381 gtgggtaaaa tcgtacatcg ggtagatgca ccatttatca ccggtttgat gatggtgagc
     1441 aaatttcaca cggtaaagca ccggatctcg catcacaata aacggggacg ccatatcaat
     1501 ttttgctctc aagcaggctt tcccttccgc aaactctccg tttttcattt tttcgaataa
     1561 cgctaagttt tcttccacgc tacgatcacg gtaagggctg tttttgcccg gctcggttaa
     1621 agtaccacgg tattcacgca tttcatcagg cgataattca tcaacatagg ctaatccttt
     1681 gttgattaac tcaatcgcat agccataaag ctggtcaaaa tagtctgagg cataacgagg
     1741 ctcaccctcc catttaaaac ctagccactc cacatcttgc ttaattgaat ctacatattc
     1801 cacgtcttct ttaaccgggt tggtatcatc aaaacgcaag ttacataaac cgttataatc
     1861 ttgagcgata ccaaaattta aacagataga tttagcgtgt ccgatatgca aataaccgtt
     1921 tggttcaggt ggaaaacgag tgtaaacatt gttgtgcttt ccgcttgcta aatcttcatc
     1981 aataatatgg gtaataaaat tggctcgagt gccagtttct gccgttaaaa tttcttcgct
     2041 catagttctc tctaaatgta tcaataaaaa taacggatta ttctacactt aattgaaaca
     2101 gacttaaaga ctaaagcaaa attcctcggt ttcctccaaa gaattttgct gttttagtaa
     2161 gatgcaatgg aattgcaaat ttttagctaa atttaaccgc ttgttattgc ctgatttcac
     2221 ggctttcgct gatcataaaa ttcgcaatcc gtttggcaat ccgccattta ccctcttgtt
     2281 taacataggt atcggcataa cgcacgctgt gatcgtgcaa gatctctttg ccctctttgg
     2341 tttctaccag tttcaccgca caatagttga tcgctgtggc gttattttca tcaataaaag
     2401 gcacggtatg ctgaccgttt aaatgataaa cgctgtgaaa cggggttaaa aaggtggtaa
     2461 acacctgttc gatttctgcc acgccgtgca tttcaaacac caattttccg ccgatgtagg
     2521 tgtttacgac ggcatcttgc gtgaaaagcg gcatctgctc ggcaaccttt ttttcatcgg
     2581 caaggttaga gaatgtatct actaaatctt ttagtgctaa acgatcttgg atttgttgta
     2641 agttcattgt gttttccttc tgatttttgc aaattttctt tggtttttca ccgcttgtta
     2701 ggctgcaata ccaacacttt cacggatttc gctgttttca cgcaaaatgc gagccacaaa
     2761 atcggcaatg gatttgcggg aaacgctgtg tcctttgaac ggttcgcctt tgtgagtcag
     2821 ctgatattgc acttccgaac cgttggtaaa ccagcccggg cggacaacgg tataatccaa
     2881 ctcgctggct tcaatcacgg ctgccgattg gcggtaaggc tctaaaattg ccccgtgatc
     2941 ttcgccggtt tcgccataaa tccccattga gctaatccaa accaagcgtt ttacctgagc
     3001 ttcattcatt gcgttcacca catttcccgc catcgctttt aagtcgccgg caagtccagc
     3061 gtaaacggca tcaacgcctt gcattgcttg ggttaatgcg tggaaatcca acacatcgcc
     3121 ttgcacaatt ttgacgcgtt cagtttcaaa tttcgctact gattgcggac gacgggcaaa
     3181 aagggttaat tgcacattat tgtcttttag cagttcagga atcacgacat tcgctaggct
     3241 accgcttgct cctaaaatta agatctgttt cattgctgtt ctccattgaa tgaagtcagt
     3301 atagcggtgt agattgcatt tgattagtag ggtaaaatcg cttgaagtaa tgagaaaaat
     3361 tcattaataa ggtggttaaa tgaaagaaaa cctcaacgat ttaagagctt ttttgttggt
     3421 agcacaaacg agcagtttta ccaaagcagc agcacagatg ggcgtgtcgc agtcggcgtt
     3481 gtcgcacagc attcggggga ttgaagaacg gttgcaaatc aagctgtttc atcgcaccac
     3541 tcgtagcatt tcaaccaccg aggcagggga gaggctgtat caacggctgt taccgctgtt
     3601 tgatgaaatc gaccaagaag taaatgggct gagtgagttt cgcaatgcgt taaaaggcgg
     3661 gctgagaatt aacggtaatg aacacgtttt ccgtgatgtg ctggcagata aattcgctga
     3721 gtttgtcaaa cgttaccctg aagtagcatt ggagctagtg gcggaagatc gctttgtaga
     3781 tattgtcgcc gagcgttttg atgccggtat tcggcttggg gcagatgtgg cgaaagatat
     3841 gattgcacta cgcatttcgc ccgatgtgaa aatgaccgca gctgccagcc ccaactattt
     3901 ggcacagcac ggcacgccga aaacgccctt tgatttaacc gaacatcatt gtctcaaaca
     3961 tcgtcttgcg acattgggcg gcattctggc gtgggaattt cgggatccca tcaccaagaa
     4021 aatcgttaaa tttcaaccgc agggcaatct tactgccaat aacggcttct tgctgcaaca
     4081 ctatgccaaa caaggtttag gcattctttg gagtccgcaa gacagcattc aaaccgagct
     4141 ggataacggc agcctcgtgc cgattttaac cgactgggca atgcagtatg agggctatca
     4201 tctctattac cccaaccgtc gccaaaattc gcctttgctg aaagcgttaa ttgatgtgct
     4261 gagaggatag gtaaaaatga gcggtcgttt ttagcaaaaa attgaccaaa aaacgaccac
     4321 ttgtagagaa gctaaattat ttcacacgag aaacatattc gcctgaacgg gtatccacac
     4381 ggataacttc accgatttga acgaataaag gcacgtttac cacagcaccg gtgcttaatg
     4441 ttgccggttt accgcctgta cctgcagtat cgccttttaa gcccgggtcg gtttcgacga
     4501 tttctaactc aacgaagttt ggtggtgtga ctgcaattgc tgaaccgttc cataaagtca
     4561 cgatacattc tgcattatca actaaccatt ttacgttgtc gcctaacgct ttttcatcta
     4621 ccgagatttg ttcaaaggtt tcagggtgca taaagtacca gaaatcacca tcgctgtaag
     4681 agtagttgta gttagaatct actacatctg ctgcttcaac cgaagtgcct gatttgaagt
     4741 tgatctctaa tactttgcca gagattaatt tacggatttt agtacgggta aatgcttgac
     4801 ctttacccgg ttttacgaat tcgttttcaa caattacaca aggttcgcca tcttgaataa
     4861 attttaaacc ttttttaaag tcgttagtgc tgtagctagc cattatttcc tcaattattt
     4921 aaaaaataac aataaattaa caaattttga acccaaccct attgggtttg tcaaaaagag
     4981 ccatataata acctaaattc acaaaattag cgaaagatct cttgcgattt ttgctataat
     5041 ttttcaaact ttattgataa ggaatgcgaa tgaaaaaact gattactctt tctgcgattt
     5101 tagccgtttc tgttgcaacc gtggcagagg caaaacgtgg cggtgggagc ttccgttcag
     5161 ttagcccgtc aaaagcggta gcaactaagc cggtagcttc tcaaaaatca accacaaatc
     5221 agcaaacgca acaaaaagat gctacttttg ccaatacgcc aaacagtgca actgcccagc
     5281 cacaagtgcg tcaaggcagc acgatggcaa atgtagcgat gggggcagca gccggttata
     5341 ttttaggtga tatgatgtca tcaaatgcac atgcaaatca gcctagccag cctgcggatg
     5401 caaatgcaca agcggtcaat tctgcacaaa atgttgcaaa tggagcagtt cctgctattg
     5461 cagaatttaa gagtattggc ggtcaaatcg atccgttttt agtagaaaaa accgatggtt
     5521 atcgccgtta ttgtatttca ggcgtgcaat acctagtcgc tgcacaaggt gtacaaacct
     5581 caccaactgt aatggttaat ccaaatggca cgccattaca atgtaactta attccataat
     5641 tatttttatt tgcgggcagg caaaaacctg ccccttgtat ctacaatatt caatgcaacc
     5701 aattcaaatc aaaccgcttt ggctaaccga gctggctcaa gcctttaata accctatcga
     5761 cttattacaa tttcttgaac tcaatccaaa tgattttgag ggcgatatag ctgcccgtaa
     5821 attatttgct cttcgagtgc caagaatgtt cgccgaaaaa atggaaaagg gtaacccaaa
     5881 cgatccgctt tttttgcaag caatgtcttt acaggcggaa tttattgagg cagaagggtt
     5941 tgtggtagat ccattggaag agcaacaaag cccagcaccg aatattttac ataaatacca
     6001 taaccgtttg ttatttatgc taaaaaacag ttgtgcgatt aactgccgtt actgttttcg
     6061 ccgtcatttc ccttatgagg aagtgaaaag cggtaaagct gtgtggcaac agggactaac
     6121 ttatattgct gagcatcccg agctggagga agtgattctg tccggtggtg atccgctgat
     6181 ggcaaaagat caggacttag attggatatt aacgcaatta gagcagattt cgcatatcaa
     6241 aaccctgcgt attcattcac gcttgccggt cgttattccc aatcgaatta cgacagaatt
     6301 atgtgaacgg ttatcaaaat ctcgcttgaa tgtcgtgttg gttacccata ttaatcacgc
     6361 caatgaaatt gatgctgttt ttgcaaacaa aatggctcaa ctgaaaaaag ccggcgttgt
     6421 attgctgaat caatcggtga tgttaaaagg tgtaaacgat aatgctcaaa ccttaaaaag
     6481 gttaagtgat aaactttttg aatatgggat tttgccttac tatttgcatt tatttgataa
     6541 agtggcaggg gcgagccatt tctatattga agatgaacag gctggtgaga tttaccgaga
     6601 attacagcgt atcacttcag gctatcttgt gccaaagctg gcaagagaaa tagcgaaaga
     6661 gccaaataaa attttgaaag gttagcttaa acagaaatca agaaacaaaa ggcgaaaatg
     6721 gtaaaatttt cgcctttttt aaccgcttgt tgcaagcggt taaattctct tacttttttg
     6781 caaattagaa gttcgcattg cgtggagcac gtgggaatgg gattacatca cgaatgtttt
     6841 gtaacccggt tacatacacg attaaacgct cgaaacctaa accgaaacct gagtgtggca
     6901 ctgtaccgta tttacgcaaa tcacgatacc accagtaatc ttcagggttt aagcccattt
     6961 cattcatacg ctgatctaac acttctaaac gttcttcacg ttgagaacca ccgataattt
     7021 caccgattcc cggagctaaa acgtccattg cggcaaccgt tttgccgtca tcatttaaac
     7081 gcatatagaa ggctttaatg tcttttggat agtttttcac gaccaccggc gatttaaagt
     7141 gttcttcggc taagaaacgc tcgtgttcag aggaaagatc gattccccaa gacaccggga
     7201 attcaaattc tttgccggat ttcaataaga tctcaatcgc atcggtgtaa tctacttgag
     7261 caaatggcga attgataaag ttttctaaac gactaatcgc ttctttatca acgtgtttaa
     7321 cgaaaaattc catatcatct ttacgttctg caagcaccgc tttaaacaca tatttcagca
     7381 tatcttcggc taattttgca ttgtcgttta agtcggcaaa ggcaacttcc ggctccatca
     7441 tccagaattc tgcaagatgg cgagttgtgt ttgagttttc tgcacggaat gtcggaccga
     7501 aagtataaac tttacttaag gcacacgcat aggtttccgc atttaactgg ccggatacgg
     7561 ttaagaacga ttctttaccg aagaaatctt ggttaaaatc cactttgccg ttttcgccac
     7621 gaggtagatt ttctaaatcc agcgtagaaa cacggaacat ttcacctgca ccttcagtat
     7681 ctgaggcggt aattacaggt gttgctaccc aatagaaacc ttgctcgtgg aagaaacggt
     7741 ggatagcttg agctaaacag tgacgaacac gagcaactgc accgattaag ttcgtacgag
     7801 ggcgtaagtg agcgacttca cgcagatatt cgatagagtg gcgtttcgct gccattgggt
     7861 aggtatcagg atcttccacc caaccaagca cttccacttt acttgcttgt aattcaacgg
     7921 cttgaccttc agcaggggat tccacaactt taccggtcac caccacagag caacctgcgg
     7981 ttaaatgtaa tacttcggca ttataatttg gtagatcgtt attaataatc gcttgaattg
     8041 ggtcaaagca agaaccatcg taaacgctca agaaagataa accggctttt gaatcacggc
     8101 gggtacgcac ccaaccacgc actgtcgctt cttcacctac cgctatcttg ccggatagga
     8161 tttccgaaac tgttggaaat ttagacattg aatacctcaa attctttgtt gtgagtttta
     8221 atataagaaa cgttccgtat tctacaagaa aataggggga aatataataa ttttacggaa
     8281 ttattt
//
LOCUS       DANLZD010000113         8205 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.113, whole genome shotgun sequence.
ACCESSION   DANLZD010000113 DANLZD010000000
VERSION     DANLZD010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8205
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.113"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..186
                     /locus_tag="PXE26_001935"
     CDS             <1..186
                     /locus_tag="PXE26_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5594496.1"
                     /translation="GTLKTKLNEFSLNQNIGRYFKQEVGITLHYKGVSSSVHAGFTKG
                     NTLQEQKFISLKVGYEW"
     gene            complement(726..1418)
                     /locus_tag="PXE26_001936"
     CDS             complement(726..1418)
                     /locus_tag="PXE26_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDL5594497.1"
                     /translation="MTELTPKQEAFCFAYIETGNASEAYRQAYETEDMKSETVHRKAK
                     ELMDNGKITARIEELKAEHAERHKLTVDDLLKELEEARILAREKENPNAMTQATMGKA
                     KLLGLDKQVTDPCFDGETGKGDMILSVNCSSIKDGKALDETCILKAGTHEFITRDSFI
                     FYRHIRIDSLDEIKANIEAGYFIQKALINDEAYQQILKGVLSSKSVTPRYKRFLKNAI
                     RQSACPDILAEP"
     gene            complement(1415..1840)
                     /locus_tag="PXE26_001937"
     CDS             complement(1415..1840)
                     /locus_tag="PXE26_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594498.1"
                     /translation="MKHELNLAGITALMNEPIKATLSFLDFPHIRIERLHHDNGRPFF
                     IGVLSLDLEDHINIEMAGATGFLEALAIIAYHQQLTATPLLVNDDLLSEINKLPHPQR
                     TNPFIDRHGNEITREQMSKEYREKIDYAFAEKRMAEGKE"
     gene            complement(1847..1999)
                     /locus_tag="PXE26_001938"
     CDS             complement(1847..1999)
                     /locus_tag="PXE26_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594499.1"
                     /translation="MPELLIVLGNRIAKLEQQHNAMPSETDSITLGILRKQLSQLLKV
                     AERIKE"
     gene            complement(2160..2846)
                     /locus_tag="PXE26_001939"
     CDS             complement(2160..2846)
                     /locus_tag="PXE26_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594500.1"
                     /translation="MADHSQFISRLENRIEPKISFQELIQELSNYTNKPFSHIADKLK
                     SLIFSFQQNGIYTNAFVNCTLFEDGESYAIEPKTLHFKDAFDQPKGVLSDVIAQNSID
                     VEHLNAYYVTAREITQLIKTQSPTLLDKLTTKQTQSEISQIQNDYISVYDFIEWASKH
                     YSSLSETANDLNRLLKDKNIQLYRQYGGISPSIDKDNTNLKAAFDFVAINNGYEKQSS
                     SFNFDDDIPF"
     gene            complement(3241..3564)
                     /locus_tag="PXE26_001940"
     CDS             complement(3241..3564)
                     /locus_tag="PXE26_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL5594501.1"
                     /translation="METIQINEQAAEKHGLRPFDVAEFLTDEATIQAYLAEVLKEGDQ
                     DEFLEALNDVARARGMAELAKQTGLGRESLYKTLAKGSKPRFDTIQKILGAFNLVLIP
                     QVKNG"
     gene            complement(3677..3895)
                     /locus_tag="PXE26_001941"
     CDS             complement(3677..3895)
                     /locus_tag="PXE26_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module killer protein"
                     /protein_id="HDL5594502.1"
                     /translation="MMREQTTNQIIITDNFSKWLENLKNPIAKATVARRIKNAINGNF
                     GDHKSLAGTGGLYEMRIATGAGYRIYYA"
     gene            complement(4170..5396)
                     /locus_tag="PXE26_001942"
     CDS             complement(4170..5396)
                     /locus_tag="PXE26_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5594503.1"
                     /translation="MARKITPLNDTQIRKAKPEDSPLRDGNGLLLVITSNSKLWRFRY
                     ERPFTKKRNDLSIGAYPDISLAQAREIREEYRALLAQNIDPQTHRQQQEQAKANEISN
                     TYENVAWAWLEHRKTKKNFSDNYQKDVIALIKNNLLPHFGRMPITQITAPMAIKAFKQ
                     YQDEGKLEKLKRAIQKHNEIMMFAVHREMIPFNPTANIAKEFDSPTVEHFKTIKPEDL
                     GEFLYTLQNAQIHLQTRYLILWQLLTMTRPNEAAKAKWADIDEKAKLWTIPAENMKRG
                     IEHKITLSRQAIALLREIKKLSGGKTYLFPSVKNPQTHVNTQTANGAIKRMGYKGKLV
                     AHGLRAIASTYLNEKGYNSDLIEVALSHLNSDRIKAAYDRGERLEQRFKLLQVWADFV
                     EECSQGSLPQYHLKIA"
     gene            complement(5671..6037)
                     /gene="ssrA"
                     /locus_tag="PXE26_001943"
     tmRNA           complement(5671..6037)
                     /gene="ssrA"
                     /locus_tag="PXE26_001943"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            6203..7162
                     /gene="rpoH"
                     /locus_tag="PXE26_001944"
     CDS             6203..7162
                     /gene="rpoH"
                     /locus_tag="PXE26_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HDL5594504.1"
                     /translation="MKKFNENEIEDAEIIDAEPIDVDEIDEEETSVEAMHPALVSGSM
                     PVPQGNLDSYIRMANQYPILTAEQEKELAERYYYDEDVEAAKQLILSHMRFVIHIARG
                     YLGYGLPLADLIQEGNIGLMKAVKRFDPNVGVRLVSFAVHWVKAEIHEYVLKNWRIVK
                     VATTKAQRKLFFNLRKNKNRLAWFNEEEIKKVADDLGVSVEEVREMESRMTGQDLGFD
                     LPAGDDDEDSYAPSMYIEDSSSNFADDLEDEQHNGQATAQLAYALATLDERSQDIIKT
                     RWLDDNKATLQDLADKYNISAERVRQLENAALKKIKEAISLDG"
     gene            7328..7621
                     /locus_tag="PXE26_001945"
     CDS             7328..7621
                     /locus_tag="PXE26_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3144 domain-containing protein"
                     /protein_id="HDL5594505.1"
                     /translation="MTQLSTSVYQRADGFINVANAHLKNIAPNQVSNAMLFGCARFNA
                     YVAASKAEYKQQLADSREEVIQYFVEQYKEMLTANLDEYIQNFERYIEGKKAD"
     gene            complement(7639..7941)
                     /locus_tag="PXE26_001946"
     CDS             complement(7639..7941)
                     /locus_tag="PXE26_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HDL5594506.1"
                     /translation="MNTYNNTLNNKNLEKKQLLMAIQAIPASQDFIWDGKDDDERPVT
                     PSEFSIAMKKRGRPAGSKKELVSLRLDKSVLEAFRASGKGWQSRINQVLSDFVKQV"
     gene            complement(7913..8203)
                     /locus_tag="PXE26_001947"
     CDS             complement(7913..8203)
                     /locus_tag="PXE26_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL5594507.1"
                     /translation="MKIYTWDETKRKINLAKHGLDFADADEVLSSPYRFDVEVIRNNE
                     FRIQSFAYSFGRLLVLSLAYTEREDYIRVISFRRASKAEREAYYEYLQQYFE"
BASE COUNT         2248 a         1565 c         1691 g         2701 t
ORIGIN      
        1 ggaacactta aaactaagtt aaatgaattt tccttaaatc aaaatatagg ccgttatttt
       61 aagcaagaag tagggattac actccactat aaaggggtat caagttcggt acatgctggc
      121 tttacaaaag gaaatacatt acaagaacaa aaattcattt cactcaaagt tggatatgag
      181 tggtaagctt tatgtaacct gaagctacac ttgaatcggt tcaaacataa tgttactaaa
      241 aaagccttga aacattgatt ttcaaggctt tttaggtatc ggttgaaccg tataggatta
      301 taatttggtg ctggggtcat ctgaattgta tcacttcaag cattgataaa taagggtttt
      361 ggttaattca aattttattt gtactcctaa atatactcct aaaattcaaa gtgccttatt
      421 gcttaggcta ttttgtgtac aattattcgg atcgtgtata gggaaattta gttcgtagtt
      481 ttctatagta gtttaagttt ataaagaaaa aatttaaaac tttttgaaat tttacccact
      541 ttacccactg atttgttgga agccttgata tataaggctt tatagccagt gggaagcaag
      601 tgggttacag tgggttaagt gggtaacttt gatttttacc cactgttagc cacttttaga
      661 ggggaaatat tagcggtttt ggtagtggtt aaagggcaaa aaaggcctta attctcatca
      721 acggcttaag gttcggctag aatatcaggg caagcacttt ggcggattgc attttttagg
      781 aagcgtttat atctaggcgt tactgatttt gacgatagta cgccttttag tatttgttga
      841 taggcttcat cattaattag ggctttttga atgaaataac cggcttctat atttgcctta
      901 atctcatcta acgaatcgat tcttatatgg cggtagaaaa taaagctgtc ccgtgtgata
      961 aattcgtgtg ttcctgcctt taaaatacaa gtttcatcaa gtgctttccc gtctttaatg
     1021 cttgagcagt ttacacttaa aatcatatct cctttaccgg tttcaccatc aaagcacgga
     1081 tcggtaacct gcttatccag ccctagcaac ttcgctttgc ccattgtggc ttgagtcatt
     1141 gcgttagggt tttctttctc tctcgccagt atacgagcct cttccagctc ctttaaaagg
     1201 tcatcaacgg ttaatttatg gcgttctgcg tgttcggctt tcagttcctc aatccttgcc
     1261 gtaatcttgc cgttatccat tagctcttta gcttttcggt ggacggtttc ggacttcata
     1321 tcttcggttt cataggcttg gcggtaggct tcgctagcat tgccggtttc aatataagca
     1381 aagcaaaaag cctcttgttt tggtgtgagt tcggtcattc tttcccctcc gccattcgct
     1441 tttcagcaaa ggcataatcg attttttctc ggtattcttt gctcatctgc tcccgtgtaa
     1501 tttcgttgcc gtgtcggtca ataaatgggt ttgttcgttg tgggtggggg agcttgttga
     1561 tttcactcaa taagtcatca ttcactaata gcggcgtggc ggttagctgt tgatgatagg
     1621 caataatcgc tagagcctct aaaaagcccg tagcccctgc catttcaata ttgatatgat
     1681 cttcaaggtc aagagaaagc acaccgataa aaaacggtct gccgttatcg tggtgcagtc
     1741 gttcaattcg gatatgcgga aaatctaaaa agctcaaggt tgctttgata ggttcattca
     1801 ttaaagcagt aatacccgct aaattaagct cgtgtttcat tttggtttat tcctttattc
     1861 tttccgccac ttttaacagt tggctaagtt gttttcttaa aatgccgagt gtgattgaat
     1921 cggtttcgct tggcattgcg ttatgttgtt gttccagctt cgctattcgg ttgcctagca
     1981 caattaaaag ctcgggcaat gggtaagctc ggtttcagaa tagaggctta aaaacgtgaa
     2041 tagtctgcta aataatcagg tgttatctca gaaaaatcga gctttttccc tagtgctgct
     2101 tctaattctt gtttatttaa aagtaaattt tggaaatcat ttaaattcat tgctgccacc
     2161 tagaacggaa tatcatcatc aaaattaaag ctgcttgatt gtttttcata tccgttatta
     2221 attgctacaa aatcaaaggc tgcttttaaa ttagtattat ctttatcaat gcttggactt
     2281 attccgccat attgtcgata aagctgtata tttttatctt tgagtaagcg gtttaaatcg
     2341 ttagctgttt cactaagact tgagtaatgt ttacttgccc attctatgaa gtcataaaca
     2401 gaaatataat cattttgaat ttggctaatc tctgattgtg tttgcttggt ggttaattta
     2461 tctaacaagg ttggcgattg tgttttaatc agctgtgtta tttctcttgc tgttacgtaa
     2521 taagcattta aatgttcaac atcaatagaa ttttgagcaa taacatcact taaaacgcct
     2581 ttaggctgat cgaaagcgtc tttgaaatgt agtgttttgg gctcaatagc atagctttca
     2641 ccatcttcaa agagagtgca atttacaaaa gcattcgtat atattccatt ttgctgaaag
     2701 gaaaaaatga ggcttttcaa tttatccgct atatgtgaaa aaggtttatt tgtatagttt
     2761 gataattctt gtatcagttc ttgaaagctg attttgggct caatacgatt ttcaagccta
     2821 gaaataaatt gactgtgatc tgccataagc gcccctttaa cgtatccctt tactgtgaga
     2881 gcgtggaaag agaaataaag ggctttctcc tttcgtgccg gttaattact ccgccactat
     2941 ccacgctaat ttgaataaat ccgtatagtt acggattgaa cttgataggt tgtattttgc
     3001 taattattca gataaattac aagtaataag ctgtgtttta ttacagtaaa tcaaaatagg
     3061 ctaaagatgg gtttccggac gctataaaaa agagcattca agcggtcata tttcattaag
     3121 gttttgcgaa tagtgcggaa ttttcggagc agtacgcacg caaggagcaa ataaaaagcc
     3181 gtcaatatcc atcaacggct atttaaaagt gaggttttga caggtagcaa gtgataagtt
     3241 ttagccattt ttgacttgtg gaataagcac taaattgaat gcccctagaa ttttttgaat
     3301 agtgtcaaag cgtggtttgc tgcctttggc tagggtttta tataggctct ctctgcctag
     3361 ccctgtttgc ttggccagct ccgccattcc tcttgctctt gctacatcgt tcaaggcttc
     3421 taaaaattcg tcttggtcgc cctcttttaa cacttccgct aaataggctt gaatagttgc
     3481 ctcatcggtt aaaaactccg ccacgtcaaa agggcgtaaa ccgtgctttt ctgctgcctg
     3541 ttcattgatt tgtattgttt ccattgcttt ctcctgtagt ttttaattca gcccataatg
     3601 ctttcgcttt ctctatatcg gcttgctgtg ttgatttatc gccgccgtgt aacaagatat
     3661 aaattacatt tccttgttat gcgtaataaa ttctatatcc ggctcctgtt gctatccgca
     3721 tttcataaag tccgcctgta ccggctaaag atttatgatc gccaaagttg ccattaatcg
     3781 cattttttat ccgtcttgct accgttgctt ttgcgatagg gttctttaaa ttctcaagcc
     3841 attttgaaaa attatcggta ataataattt gattagtggt ttgctctctc atcattgccg
     3901 gcttcttatt ctatttattg cttattgtat ccattaagat acagtgagca agggtttttg
     3961 ccatttaccc acttttaacc cactttaccc actgtcattt tttctttatt tttcagttag
     4021 ttataaaaaa ataatagtga aaagtgggta aagtgggtaa aaatcgaaaa gtttacagaa
     4081 ttttcatcaa ggggaattac gggcataaaa aagccgtcag gcggtttacc taacggcatt
     4141 acaagcggtc atttttggcg gaaaatttac taggctattt tcaaatgata ttgcggtaag
     4201 ctaccttgcg aacattcctc tacaaaatcc gcccacactt ggagcagttt aaaacgttgc
     4261 tctaggcgtt cgcctctatc ataggcggct ttgattcggt cgctgtttaa atgcgataag
     4321 gcaacctcga ttaaatcgct attgtagcct ttctcattaa gataagtgga ggcgatggcc
     4381 cgcaagccgt gagccactaa tttgcccttg tagcccattc gtttgatcgc accgttggcg
     4441 gtttgagtat tgacgtgcgt ttgtgggttc ttcacgctag ggaataaata cgttttaccg
     4501 ccacttagct ttttaatctc tcgcaaaagt gcgattgctt ggcgtgagag tgtgatttta
     4561 tgctcaatgc ctcgcttcat attttccgcc ggtatcgtcc acagtttggc tttttcgtct
     4621 atatccgccc attttgcctt agccgcttca ttcgggcggg tcattgtgag taactgccac
     4681 agaattaaat agcgtgtctg taaatgaatt tgggcgtttt gtaaggtgta taaaaactcg
     4741 cctaaatctt ccggcttaat ggttttgaaa tgttcaaccg ttgggctatc aaactctttc
     4801 gcaatattgg cggtagggtt aaacggtatc atttcacggt gtacggcaaa catcataatt
     4861 tcattatgtt tttgaattgc ccgttttaac ttctctagtt tgccctcgtc ttggtattgc
     4921 ttgaatgcct tgattgccat tggtgcggtt atttgtgtga taggcattct tccaaagtgc
     4981 ggcaagaggt tatttttaat taaggcgatt acatcttttt ggtagttgtc tgaaaaattc
     5041 ttcttggtct tgcggtgttc cagccacgcc cacgctacat tttcataagt gttgctgatt
     5101 tcgttggcct ttgcctgttc ctgttgttgg cggtgggttt gagggtcgat attttgagcc
     5161 aataatgccc tatattcttc tctaatttct ctcgcttgtg ctaaagaaat atcagggtaa
     5221 gccccaatgc ttaaatcatt ccgctttttt gtgaacggtc tttcatacct aaaccgccac
     5281 aatttagaat ttgaggtaat aacaagtagt aagccgttac cgtctcttaa tgggctgtct
     5341 tccggtttcg cttttcttat ttgggtatcg tttaacggtg tgatttttct agccatagta
     5401 aacctttagg agtataaagc ctaaatctta ggagtatgat tttttgtttg ggagtacaaa
     5461 actaaaagcg ataaagcctt atttgaaaag gctctaaagt ggttttagga gtacgaattt
     5521 ttgggggtat tccggcgtac tcctaaatat actcctaaaa tcttcggatt tgattgtatc
     5581 gtataggtac gcaacggaca ataaaaaagc cttgaaacat tgattttcaa ggctttttag
     5641 gtatcggttg aaccgtatag gattataatt tggtggagct ggggggattt gaacccccgt
     5701 ccgaaatttc tctaccttca gtactacatg tttagtctag tctttaattt cgcttattca
     5761 cagcggacag acacgcaatg aataaactag ctttatttaa tttagtgttt cgatcctaaa
     5821 gcggcggcgt ccacacgatc tcgttttggg tgacttatct ttgccctcgt cttacgagcg
     5881 gaagctgagg agataaggct ttaaagcagg ttattaagct gctaaagcgt attgttcgtc
     5941 gtttgcgact attattttgc ggtttgttta cgaggcctac cgcacctcga catgcacctt
     6001 gggcttcgcc aatcccgtcg aatccaaaat cagccccaaa agtagcggta ttctaaagga
     6061 aagcggtcga atttgcaaaa agttttgcaa gtggcggaac ttagcggtat tgaatagctc
     6121 gaaataaaat catacaaatc ccacaccaga tagatttaac tctgttataa tgtaaacctt
     6181 gctgagagtg aagagaaata gaatgaaaaa atttaacgag aacgagattg aagatgctga
     6241 aattatagat gccgagccga ttgatgttga tgagatagac gaagaagaaa catcggtaga
     6301 agcaatgcat ccggctttgg tttccggctc aatgcctgtg ccgcagggca atttggatag
     6361 ctacatccga atggcaaatc agtatccgat tctcaccgcc gagcaagaaa aagaactggc
     6421 ggagcgttat tattatgatg aagacgttga ggcggcaaaa cagctgatcc tttcccatat
     6481 gcggtttgtg atccatattg ctcgtggcta tttgggctat ggtttaccgc tggcagatct
     6541 gatccaagag ggtaatatcg gcttgatgaa agcggtaaaa cggtttgacc cgaatgtcgg
     6601 cgtgcggttg gtttcttttg cggttcattg ggtgaaagcg gaaattcacg aatatgtgct
     6661 gaaaaactgg cgaattgtga aagtggcaac caccaaagct caacgtaaat tattctttaa
     6721 tttacgcaaa aataaaaacc gcttggcgtg gtttaatgaa gaagagatca aaaaagttgc
     6781 cgatgattta ggggtttcag tggaagaagt acgagaaatg gaatctcgaa tgaccggaca
     6841 agatttaggt tttgacctgc ctgccggtga tgacgatgaa gacagctacg ctccttctat
     6901 gtatattgaa gatagcagct ccaatttcgc cgatgacttg gaagacgaac aacataatgg
     6961 gcaggcaacc gctcaacttg cctatgcgtt agccaccctt gatgaacgta gccaagacat
     7021 catcaaaacc cgctggttag atgacaataa agccacactg caagatttag ccgataaata
     7081 taacatctcg gcagagcggg taagacagct tgaaaatgcc gcattgaaga aaatcaagga
     7141 agcgatttca ttagacggct agaaatgcct acaagcggtg atttttttac tcgctacgct
     7201 cgcacttcgt gccgtcggca gagccaacgt tcaaacgcaa gcgtttgtgc aaaattttac
     7261 gcaaaaagca ccgcttgtat tttgactaaa aatgaggata ctatgattaa cattaccgat
     7321 aaacaaattg acccaacttt ctaccagcgt ctaccagcga gcagacggct ttattaacgt
     7381 tgccaacgct catttaaaaa acattgcccc aaaccaagtc agcaatgcga tgttgtttgg
     7441 ttgtgccaga tttaacgcct atgttgcggc aagcaaggcg gaatataaac agcagttggc
     7501 cgattccaga gaagaagtta ttcaatattt tgtggagcaa tacaaagaaa tgctcactgc
     7561 aaatttagat gaatatatcc aaaacttcga gcgatatatt gaagggaaaa aggcggatta
     7621 accgcctttg ttttgtggtc aaacttgttt tacaaaatca cttaaaactt gattaattct
     7681 actttgccaa cctttacctg aagctctaaa ggcttcaaga acgcttttat caagacgtaa
     7741 cgaaaccaat tctttctttg aaccagctgg tctgccacgt tttttcattg caattgaaaa
     7801 ctctgatggc gtaaccgggc gttcatcgtc atcttttccg tcccaaataa aatcttggct
     7861 tgccggaata gcttgaatag ccataagtag ctgttttttc tctaaatttt tattattcaa
     7921 agtattgttg taagtattca taatatgcct ctctttctgc tttagatgct cgccgaaagc
     7981 taattactct gatgtaatct tccctttctg tatatgcaag tgataatacg agtaaacgtc
     8041 caaatgaata tgcaaaagat tgtattctaa attcattgtt acgaataact tcaacatcaa
     8101 atcgataggg cgatgagaga acttcatctg catcggcaaa atctaatccg tgcttggcta
     8161 aattgatttt gcgtttagtt tcgtcccaag tataaatttt cataa
//
LOCUS       DANLZD010000114         8181 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.114, whole genome shotgun sequence.
ACCESSION   DANLZD010000114 DANLZD010000000
VERSION     DANLZD010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8181)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8181)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8181
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.114"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(82..1665)
                     /locus_tag="PXE26_001948"
     CDS             complement(82..1665)
                     /locus_tag="PXE26_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5594508.1"
                     /translation="MKKQFEHNESRRGFMKLIAGVGAGMAFSGTLGTFTPKAFAAPAA
                     GSTIEAGIAYPISTGFDPLTSSGASSMAANLHIFEGLVDLHPATRKPYLALAAAEPEK
                     IDDVTYRITLRDGAKFHNGNPVTTEDVVYSFERVLDPAKASLFAQFIPFIDTVKKVDD
                     KVVEFKLKYPFALFKERLTIVKIVPKAVVEAGQAAFDANPVGTGPYKFVSATKDDRIV
                     FEAFADYNGGYPAQVEKMTWFLLSDDAARVTAQESGRVQAIESVPYLDAERLKRKGTV
                     ESVQSFGLLFLMFNCEKAPFNNPKVRQALHYGLDTQKLIDVVFLGNAKAATSYVQDTH
                     PDYVKANSQYDFDKAKAEALLAEAGVTELKFELLATDHSWVKECAPLILESWNSLKGV
                     KVSLKHLQSGALYGTHVDKGAYEVVIAPGDPSVFGNDLDLLLSWWYRGDVWPKRRFRW
                     SETAEYAEVQKLLDEAAKNPAASKEAWAKAINIIAEQVPLYPIIHRKLPTAWNDKALT
                     GFQPLPTTGMSFIGVGRAK"
     gene            1887..3044
                     /gene="hemW"
                     /locus_tag="PXE26_001949"
     CDS             1887..3044
                     /gene="hemW"
                     /locus_tag="PXE26_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HDL5594509.1"
                     /translation="MNLILPPLSLYIHIPWCVQKCPYCDFNSHAQKGLIPEQEYIEHL
                     LADLSQDLTAYRVAIGDRKLYSIFIGGGTPSLFSAEGIAYLLIEVEKRIAFEPNIEIT
                     LEANPGTAEAERFLGYAQGGVTRISMGIQSFEPEKLLKLGRIHDANEAKQAIKFAQNS
                     AKSGLQSFNIDLMHGLPNQSVKQALADLETGISLNPPHLSWYQLTIEPNTMFYYRKPT
                     LPDDDELWDIFEQGHQLLTNAGYEQYETSAYAKKGYQCRHNLNYWRFGDYLAIGCGAH
                     GKISYPTGEIYRFSKIKHPKGYMRGEYRYSQDLIELDDRPFEFFMNRFRLLEATPKQE
                     FEWFTGLDREVVRPTIDWALNQNYISETATHWQITQHGKLFLNELLEGFLE"
     gene            3187..3669
                     /locus_tag="PXE26_001950"
     CDS             3187..3669
                     /locus_tag="PXE26_001950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL5594510.1"
                     /translation="MIDKQIRNSTAEFLIFTQQNGAENITVRYEDNEIWLTQKLIAQL
                     FDCSTDNVSLHLKNIFNSRELDPNSVTEDFSVTAADVKNYRTKHYNFDAVISIGYRVN
                     SVRATQFRQWATKVLRNFAQKGYVIDRQRMENGTFLNEDYFEQLLAEIREIWLSERRS
                     "
     gene            3638..3835
                     /locus_tag="PXE26_001951"
     CDS             3638..3835
                     /locus_tag="PXE26_001951"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594511.1"
                     /translation="MKFGYLNGVLEGKGKMRFDEAKLHAESEFEKYRIVQDRLFESDF
                     DKVLKEMLRSENQYRPSFSTT"
     gene            3922..4389
                     /gene="bcp"
                     /locus_tag="PXE26_001952"
     CDS             3922..4389
                     /gene="bcp"
                     /locus_tag="PXE26_001952"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HDL5594512.1"
                     /translation="MNILQAGDKAPKFTLQNQADEPVSLSQFAGKKVLVYFYPKALTP
                     GCTTQACGLRDSKSELDELNVVVLGISTDLPKKLAQFVEKKALNFTLLSDPDHQVAEA
                     FGVWGEKKFMGKTYDGIHRISFLIDEQGGVEQVFDKFKTGEHHQMIVDYLRGR"
     gene            4389..4937
                     /gene="gmhB"
                     /locus_tag="PXE26_001953"
     CDS             4389..4937
                     /gene="gmhB"
                     /locus_tag="PXE26_001953"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HDL5594513.1"
                     /translation="MGKKAIFLDRDGTINIDHGYVHQIDDFQFIDGVGKALKQLQDKG
                     YLLVLVTNQSGIARGYFSEAQFMQLTEWMDWSLDEDYGVVLDGIYYCPHHPEGKGEYR
                     KDCDCRKPKAGMFTQAIQDLNIDPSQSYMVGDKLEDILAAEAAGVKTKVLVRTDKAVT
                     EEGQAKADLVLDSLVDLVKYIK"
     gene            4942..5781
                     /gene="queF"
                     /locus_tag="PXE26_001954"
     CDS             4942..5781
                     /gene="queF"
                     /locus_tag="PXE26_001954"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HDL5594514.1"
                     /translation="MNYNDKSLSALKLGQKTEYKSEYDASLLQPVPRKLNRDSLGITQ
                     EQPFNRGADVWTCYELSWLNQNGLPQVAIADVAIDFKSENLIESKSFKLYLNSFNQTK
                     FSSIEEVGKTIQADLARCASGQVSVKIYQLSHYTQQPIVDFAGDCIDEQDIQIDSYAF
                     STHYLENIAEDELVEETLVSHLLKSNCLITSQPDWGSVQIRYKGKKLNREKLLRYLVS
                     FREHNEFHEQCVERIFCDLMQFAEPEKLTVYARYTRRGGLDINPFRSNFEEVPENLRM
                     ARQ"
     gene            5973..7106
                     /locus_tag="PXE26_001955"
     CDS             5973..7106
                     /locus_tag="PXE26_001955"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HDL5594515.1"
                     /translation="MLIFMMNEYSPNYYIGVMSGTSLDGVDIALLDFAKNPPKMTACD
                     FFPMPEELRADISALLKTGETNLQKLGEIDHRLGLLYAETINAFLAKNQLKAEDIQAI
                     GCHGQTVWHSPDSEYPFTTQIGDMNLVAEQTGITTIADFRRKDMAVGGQGAPLVPAFH
                     QAIFSDPNRLTVVLNIGGISNISVLNPNSPTVGYDVGAGNTLMDSWIEQHQGKRYDKN
                     GEWARTGKLNTELLATLLDESFFAKAPPKSTGRELFNLTWLAKKLENLTACQPQDVQR
                     TLAEFTAQSIANELLRFESSLPRLLLVCGGGSRNPLLMERISALLPEWEVTTTTEFGL
                     DIDYVEAAAFAWLAYQRIHNLPSNMPSVTGAKKAVSLGVIYPA"
     gene            complement(7103..8161)
                     /locus_tag="PXE26_001956"
     CDS             complement(7103..8161)
                     /locus_tag="PXE26_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5594516.1"
                     /translation="MAEILFRSCLCCNAKRIFYLLTFYKGFETSQIATAFSLLVFTSQ
                     AFSLFAGSWGDSFGRYPIMMLGCLLDALAYILLLTTKNYPLLLLATFFFGLGSTLFST
                     NARAFLLANIQDTGDSYQLKTKAQGKFLKVSSLSAMVAPLLTIPFIFYRKAEWLIWIS
                     CCIEIIMLFVMFKTAPKTHECANGQCERFKFGALKGILNEQFIFVHLLLFIPLGLGSA
                     FYIIFPYIFTNLLDKPELVSVSFFVNNLIAVLLQSDFSRKLNLTVHKLIYIAPILIIL
                     QIMPWFYALQWLSTITAFLYLVIFATITVYANTALSNMLVKLDNGKNQGLMFGSSKLI
                     LAITTLGVMNVLPYIFLI"
BASE COUNT         2529 a         1545 c         1752 g         2355 t
ORIGIN      
        1 ttacatcatt ttgattttta tttatgcaag cggtaaattt tttgtaaaat attaccgctt
       61 gcatttagct agccgttacg actatttagc acgaccaaca ccgataaatg acatacctgt
      121 tgttggtaat ggttggaaac ctgttaatgc cttatcattc cacgcagttg gcaatttacg
      181 gtgaataatt gggtaaagag gcacttgttc agcgataata ttgattgctt tcgcccaggc
      241 ttctttagaa gcagcaggat ttttggccgc ttcatcaagc agtttttgta cttctgcata
      301 ttcagctgtt tcagaccagc ggaaacgacg tttcggccat acatcaccac gataccacca
      361 gcttaataat aggtctaagt cattaccgaa aactgatggg tcgccaggtg caatcacaac
      421 ttcgtatgca cctttatcaa cgtgtgtgcc atataatgca cctgattgta agtgtttgag
      481 tgaaactttc acgcctttta agctgttcca cgattcaaga attaatggcg cacattcttt
      541 cacccaagag tgatcggttg ccaacaattc aaattttaac tctgtcacac ccgcttctgc
      601 taataacgct tcggctttcg ctttatcgaa atcatattgc gaatttgctt tcacataatc
      661 cgggtgagta tcttgcacgt aagatgtagc agcttttgca ttgcctaaga acaccacatc
      721 aattaatttt tgggtatcta agccataatg taacgcttgg cgaactttcg ggttgttaaa
      781 cggtgctttt tcacagttaa acattaagaa cagtaagccg aatgattgta ctgactcaac
      841 ggtaccttta cgttttaagc gttctgcatc taagtaaggc acagactcaa ttgcttgaac
      901 acggccagat tcttgagcgg ttacacgagc ggcatcatca gaaagtaaga accaagtcat
      961 tttctcgact tgtgccgggt agccaccgtt ataatctgca aatgcttcga aaacaatacg
     1021 atcatcttta gttgcggata caaatttata tgggccagtc cccactggat tagcatcaaa
     1081 tgcagcttga ccggcttcta ccactgcttt tggtacgatt ttaacaatgg ttaggcgctc
     1141 tttgaataac gcaaatggat atttcaattt gaattcaacc actttgtcat caactttttt
     1201 cacagtgtca ataaatggaa tgaattgtgc gaaaagtgat gctttagctg ggtctaatac
     1261 acgttcaaat gagtaaacta cgtcttcagt ggtaaccgga ttaccattgt ggaatttagc
     1321 cccgtcacgt aaagtaattc gataggttac atcatcaatt ttttcaggct ctgctgctgc
     1381 caatgctaaa tatggtttgc gagtggctgg atgtaagtcc acgaggcctt caaaaatatg
     1441 gaggtttgcc gccattgagg atgcaccgct tgaggtaagc gggtcaaatc cggttgatat
     1501 gggataagct ataccggcct caatcgttga gccggcggca ggggctgcaa atgctttagg
     1561 tgtaaatgta cctaaagtgc cactaaatgc cataccggca ccgacacctg caattagttt
     1621 cataaaacca cggcgggatt cgttgtgttc aaactgtttt ttcatcttaa agctccttta
     1681 agtttttatg ataggggcgg tattatttgc tgaagtgaat ttatcaaaaa atgcactttt
     1741 ttgaattgaa tttatcatat cattaatgtc aaagtggtaa agcaagaatt attgaatttg
     1801 tgatctagct cacgaaaatc tttgcttttc acttcacgtg cttttcgtta ttattcgcca
     1861 atttaatcat aaatgaaaaa ttgacagtga acctgatttt accgccttta agcctttata
     1921 tccatatccc ttggtgcgtg caaaaatgcc cttattgcga ttttaactcg cacgctcaaa
     1981 aaggattaat tcccgagcaa gaatatatcg aacatttact tgcagattta tcccaagatt
     2041 tgaccgctta ccgagtggca ataggtgatc gtaaattata ttctattttt attggcggcg
     2101 gcaccccgag cttattttca gcggaaggga tagcttattt attaattgaa gtagaaaaac
     2161 ggattgcatt cgagccaaat atcgaaatta cactggaagc gaacccggga accgcagagg
     2221 cagagcgatt tttaggttac gcacaaggtg gcgtaacccg catttcaatg ggaatccaaa
     2281 gttttgagcc ggaaaaatta ttgaaattag gacggattca cgatgcaaat gaagcaaaac
     2341 aagcgattaa atttgcccaa aattctgcaa aatcgggctt gcaaagtttc aacattgatt
     2401 taatgcacgg cttaccaaac caatcggtta aacaagcctt ggcggattta gaaacaggga
     2461 tttcactcaa tccaccgcat ttatcgtggt atcagctcac gattgagccg aatacgatgt
     2521 tctattatcg taagccaacc ttgcctgatg atgacgagtt atgggatatt ttcgagcaag
     2581 ggcatcaact tttaacgaat gccggctatg agcagtatga aacctcggct tatgccaaaa
     2641 aaggctacca atgcagacac aatttaaatt attggcgatt tggggattat ttggcgattg
     2701 gttgtggcgc tcacggcaaa atttcatatc cgaccgggga aatttatcgc tttagcaaaa
     2761 tcaaacaccc gaaaggttat atgcgaggtg aatatcgcta cagccaagat ttgattgaat
     2821 tagacgaccg cccgtttgag ttttttatga accgctttag attacttgaa gcgacaccaa
     2881 aacaagaatt tgaatggttt acagggttag acagggaagt tgttcgcccg acaatcgatt
     2941 gggcgttaaa ccaaaactat atttccgaaa ccgcaaccca ttggcaaatt acccaacacg
     3001 gtaaattgtt tttaaatgaa ttactggaag gatttttgga ataatttgca aaaaaacgac
     3061 taaaaaaaga ccgcattgta atgctaaatt acaggcgttt tttgtgatct gcgtcgaaaa
     3121 atcctcattt tttactagac aaaaaaacag tatttagtag catagccttc acaataagga
     3181 gagcttatga tcgataaaca aatccgtaat agtaccgccg aatttttgat ttttactcaa
     3241 caaaatgggg cagaaaatat taccgttcgc tatgaagata acgaaatttg gcttacgcaa
     3301 aaattaattg ctcagctttt tgattgctca acagataatg tttctttgca tttaaaaaac
     3361 atttttaata gtagggaact cgatccaaat tcagttaccg aggatttctc ggtaactgcc
     3421 gcagatgtca aaaattatcg taccaaacac tacaactttg atgccgttat ttcgataggc
     3481 tatagggtaa actcggtgcg ggcgacacaa tttcgccaat gggcaactaa agtattacgg
     3541 aatttcgccc aaaaaggcta tgtgattgac cgccaaagaa tggaaaatgg tacattttta
     3601 aatgaagatt attttgagca gttgctggca gaaattcgtg aaatttggtt atctgaacgg
     3661 cgttcttgag ggcaaaggca aaatgcgttt tgatgaagcg aaattgcacg cagaaagcga
     3721 atttgagaaa taccgcattg ttcaagacag attatttgaa agcgattttg acaaggtatt
     3781 gaaagaaatg ttgcgttcgg aaaatcaata ccgtccatca ttttcaacaa cataaaacaa
     3841 ccgcattttg caaatttttt gccaagtttg accgcttgcc gtgtataatg caagcggtta
     3901 ttttttatgg aaaaattaca aatgaatatc ttacaagcag gcgataaagc ccctaaattt
     3961 acccttcaga atcaggctga cgagccggtt tctctctctc aatttgccgg caaaaaagta
     4021 ctggtttatt tttatccgaa agctcttaca cccggttgca ctacgcaagc gtgcggactg
     4081 cgtgacagca aatcagaact tgatgagctc aatgtggttg ttctcggaat tagcaccgat
     4141 ttaccgaaaa aattagctca atttgtagag aaaaaagcac ttaattttac cttattatct
     4201 gacccggatc accaagttgc agaagccttt ggtgtatggg gcgaaaagaa atttatggga
     4261 aaaacctatg acggcattca tcgcatcagt tttttaattg atgagcaggg gggggttgag
     4321 caagtgtttg ataaatttaa aaccggcgaa catcaccaaa tgatcgtgga ttatctacgg
     4381 ggtcgctaat gggaaaaaaa gccatttttt tagaccgtga cggcacaatt aatatcgatc
     4441 acggctatgt gcatcaaatt gatgattttc aatttattga cggtgtcggc aaggcgttaa
     4501 aacagctaca agacaaaggt tatttattgg tgctggtaac caatcaatct ggcattgccc
     4561 gaggctattt tagcgaagca caatttatgc aactaaccga atggatggac tggtcgctcg
     4621 atgaagatta tggcgtggta ctagacggta tttactactg cccacatcac cccgaaggca
     4681 aaggcgaata ccgtaaagat tgtgattgcc gtaagcctaa agcaggtatg tttactcaag
     4741 cgattcaaga tttaaacatc gacccaagcc aatcttatat ggtgggcgat aaattagaag
     4801 atatccttgc cgcagaagcc gccggcgtga aaaccaaagt gctggttcgc actgacaaag
     4861 cagtgacgga agaggggcag gctaaagccg atttggtgtt agatagttta gttgatttag
     4921 taaaatatat taaataaagc aatgaattat aacgataaat ccctttccgc cctgaaatta
     4981 gggcaaaaaa ccgagtacaa aagcgaatat gatgcctcgc ttttgcaacc tgttcctcgt
     5041 aaattaaacc gtgatagttt aggcattaca caagagcagc cttttaaccg aggggctgat
     5101 gtgtggactt gctatgagct atcttggttg aaccaaaatg ggctaccgca agtagcgatt
     5161 gcagatgtcg ccattgattt taagagcgaa aacttaattg aatcgaaaag tttcaagctc
     5221 tatttgaaca gttttaacca aaccaaattt agctcaatag aagaagttgg gaaaacgatt
     5281 caagcggatc tggctcgctg tgcaagcggt caggtttcgg taaaaattta ccaattatca
     5341 cactacacgc aacagccgat agttgatttt gcaggcgatt gcattgatga gcaagatatt
     5401 caaatcgaca gttatgcgtt ttcgactcat tatttagaga acattgcaga agatgagttg
     5461 gtggaagaaa ccttagtcag ccatttgctc aaatctaact gcttaattac gtcacagcct
     5521 gactggggaa gtgtgcaaat tcgctacaaa ggcaaaaagc taaaccgtga aaaactgtta
     5581 cgttatttag tgtcgttccg tgagcataat gagttccacg aacaatgtgt ggaacgcatt
     5641 ttctgtgatt taatgcaatt tgccgagccg gaaaaattaa cagtttacgc acgctacacc
     5701 agacgaggcg ggctagacat caatccgttt agatcgaatt ttgaggaagt gccggaaaat
     5761 ctaagaatgg cacgccaatg attttgttgt tttttgttcc cgtctgaacc gcctgagcgt
     5821 gtttgaattg gtaggtaaat ttactctgag cggagcgaat gtaaatttgc cgttaagcca
     5881 attcaaacta agcgaggata gcggtgaagc tcgggttgcc tttcttttgg ttacttttct
     5941 ttggcaaagc aaagaaaagt aacaaatagc agatgttgat ttttatgatg aatgaatata
     6001 gcccaaatta ctatataggc gtaatgtccg gcacgagcct tgatggggtg gatattgctt
     6061 tgctggattt tgcaaaaaat ccaccgaaaa tgaccgcttg tgattttttt ccaatgccgg
     6121 aggaattacg ggcggatatt tctgcgttac ttaaaaccgg cgaaaccaat ctccaaaaac
     6181 tgggggaaat tgatcaccgt ttaggcttgc tttatgcaga aacgatcaat gcgtttttag
     6241 cgaaaaatca gctaaaagca gaagatattc aagccatagg ttgtcacggg cagacggtgt
     6301 ggcattcacc ggattctgag tatcccttca ccacccaaat tggcgatatg aatttggtgg
     6361 cagagcaaac cggtattacc actatcgctg attttcggcg taaagatatg gcagtaggtg
     6421 ggcaaggggc tccgcttgtg ccggcatttc atcaagctat ttttagcgat ccaaatcgtc
     6481 taacagtggt gctgaatatt ggcggcatca gcaatatttc ggtgttaaat cccaattccc
     6541 ctacagttgg ttatgatgta ggagccggaa atactttgat ggatagttgg atcgaacaac
     6601 atcaaggcaa aagatacgat aaaaacggcg aatgggcgag aacgggcaag ctcaatactg
     6661 aactgttagc gacgttatta gacgagtcgt tttttgctaa agccccgcct aaaagcactg
     6721 ggcgggagct gtttaattta acgtggcttg caaaaaaatt ggaaaatttg accgcttgtc
     6781 agccacaaga tgtgcaacgc acgctggcag aatttactgc tcaaagtatt gccaatgagt
     6841 tattacgctt tgaaagctct ctgcctcgct tgcttttagt ttgtggtggt gggtcaagaa
     6901 atccgttatt aatggaacgg atttctgctt tacttcccga gtgggaggtt acaaccacta
     6961 cagaatttgg tttagatatt gattatgtag aggctgccgc ttttgcttgg ttagcttacc
     7021 agcgaatcca taatttaccc agtaatatgc ctagcgtgac aggagcaaaa aaagccgtga
     7081 gtttgggcgt gatttaccct gcttagatta agaaaatgta aggtaataca ttcattactc
     7141 cgagagtggt aatagctaaa attaatttag agcttccaaa cattaagcct tggtttttac
     7201 cattgtctaa tttcactagc atattagata gtgccgtatt cgcatacacg gtaatagtgg
     7261 caaaaatcac taaatagaga aatgcagtga tggttgaaag ccattggagt gcataaaacc
     7321 aaggcattat ttgaagtata atcagtattg gtgcaatata aataagttta tgtactgtca
     7381 gatttaattt tcgtgaaaaa tcagattgca ataacactgc aattaaatta ttcacaaaga
     7441 atgagacaga gactaattct ggtttatcca gaagattggt gaatatatag gggaatataa
     7501 tataaaatgc acttcctaga ccaagcggaa taaaaagtaa taaatgtaca aaaataaatt
     7561 gttcatttag tattcctttt aatgcaccaa atttaaagcg ttcgcattgc ccatttgcac
     7621 attcatgtgt tttgggtgcg gttttaaaca taacgaatag cataataatt tcaatgcagc
     7681 agctaatcca aataagccat tctgctttac ggtagaaaat aaatggaata gtaagtaatg
     7741 gtgctaccat cgctgacagg cttgatacct tcagaaattt accttgagcc ttagttttga
     7801 gttggtaact atctccggta tcttgaatat tggctaataa gaatgctctc gcattggtac
     7861 taaataaggt gctaccgagc ccgaagaaaa aggtagcaag taatagcaga gggtaatttt
     7921 ttgttgtcag taataaaatg taagctaggg catcgagcaa acagccaagc atcatgatag
     7981 ggtaacgtcc aaaactatca ccccaagaac ctgcaaaaag ggaaaatgct tggctggtaa
     8041 agaccaacaa agaaaatgca gttgcaattt ggctggtttc aaagcctttg tagaatgtaa
     8101 gtagataaaa aatacgcttt gcattgcagc ataagcaaga ccggaaaaga atttccgcca
     8161 taaaatgata ttttggatat t
//
LOCUS       DANLZD010000115         8135 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.115, whole genome shotgun sequence.
ACCESSION   DANLZD010000115 DANLZD010000000
VERSION     DANLZD010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8135)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8135)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8135
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.115"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            43..729
                     /locus_tag="PXE26_001957"
     CDS             43..729
                     /locus_tag="PXE26_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5594517.1"
                     /translation="MDTLASRLKIVLDQKGLTQEKFAEQIGVSQPSVFKILNGQTRNP
                     TRIYEIANVLDVDVNWLKTGKGEAPDFAKIGKNPTAYEEESSMLRLEVLDVYASAGNG
                     SFVTGDLTAYTHAVEFENAYFAQVFQRANAKGLSIINVDGDSMEPTIGNGDLLFVDTT
                     KSAYQGDGVYVFSYGENLYVKRLQFAGDELLVISDNPLYKEWRITSENEHKFQIHGKV
                     EFMQGHIRRV"
     gene            733..1251
                     /locus_tag="PXE26_001958"
     CDS             733..1251
                     /locus_tag="PXE26_001958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594518.1"
                     /translation="MEHQNLTHLVYITSHKQIGVYSISNLNIDDLYFKGYCIQKNRVI
                     TLRADRIIKQFDDLALAENYAKNIPQDVFYLFDSLLNQQRKEKITPIYKIGLCFTGFK
                     QARKNELIQLAVDNDLRVVQNVTGAVDFLIFDKESKTVGPAKLAKAEKLGIKIIDDEE
                     FLYMLETGVVPD"
     gene            1269..1679
                     /locus_tag="PXE26_001959"
     CDS             1269..1679
                     /locus_tag="PXE26_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594519.1"
                     /translation="MFIPKSSKLKTNNYIEELNIKSIGETDMKKALTLLALSLFALPV
                     QADSLELARNKVKQIFISDEEPKVKDATWTAPFIFKVGVFDDGTKRDGYAEYVCQVLY
                     DHGFKGKGVLVSVIDIKKLVQTGDWVDLGKAKCQ"
     gene            1779..2039
                     /locus_tag="PXE26_001960"
     CDS             1779..2039
                     /locus_tag="PXE26_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excalibur calcium-binding domain-containing
                     protein"
                     /protein_id="HDL5594520.1"
                     /translation="MKKLVLSILFVISPMALAYSCNDPIPYCKEMQSCEQAKFYLNQC
                     NAGRLDRDNDGIPCENVCGKKGKSEKKDDKKSDKSKSKKTSN"
     gene            2071..2880
                     /locus_tag="PXE26_001961"
     CDS             2071..2880
                     /locus_tag="PXE26_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HDL5594521.1"
                     /translation="MMNNQSVWHLFCDESGISGKPFYAFGALWIREDKISLFEKEIQK
                     LREKHYCTDEIKWQGTNSKRFSEFYRELVSFFFQADYLFFNCIVVQQAIVNKAFHNGD
                     YEMAKQKHFNLLICNKIEQSLYKNRINRFVLSVDDLPFKYNKADEAMHIIANNIIRKK
                     TAVANAILALNEVDSRKSSGVQLCDLLLGAILSSYQNDITSERKKELTKWIALHLGWD
                     KLTYDTLQEEKKFNIWYFYDPTKGPRIVRTRETKLKYPLLKKKEQTFQPAR"
     gene            complement(3063..4301)
                     /locus_tag="PXE26_001962"
     CDS             complement(3063..4301)
                     /locus_tag="PXE26_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HDL5594522.1"
                     /translation="MDFLTELTNHNHRTPAVSVTVRPKPSKDNEGEKAKDISTLITHR
                     LIQLTLTDNRGFEADQLDLELDDTDGLLALPSRGAILSVGLGWQNSPLTYKGEYTVDE
                     LTHDGPPDKVTIRARSADLRGTLTNRHERSFHRTTIGKIVKQIAEENKLKPMVGKEFE
                     NEEVKHIDQTNESSINLLQRLAEQFDAIATVKNGNLIFIKAGNATTASGKLLPLFRIT
                     RSSGDSHSFSIAEGDNYKAVKAYWHNTQTGKRGEVTWDENSQVKKVTKPTMRKKTKVK
                     RGADGKPIKGKDGKSIKETVFVKGKGRQVNAVVQSKPIESDSEAIKTLPHTYATAQSA
                     INACKRNFEKLQRGVATFSLTLAEGNAELIPELPVQVSGFKAEIDSNEWIISQVTHSL
                     NKGGGFTTALEMELKPKSED"
     gene            complement(4301..4738)
                     /locus_tag="PXE26_001963"
     CDS             complement(4301..4738)
                     /locus_tag="PXE26_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5594523.1"
                     /translation="MLQQFAMMSLGYFVFMRLTIPYQDTSREMNWSHVQNDVVGAMPK
                     SQFTGKAGETMEISAELRPEITGGKMSILALEMMAEQGSAYPLISGSTFMVLGWFVID
                     RISEQETTFFADGTPRAISFSMSLKRVDDSLLANIIDEVAGFI"
     gene            complement(4740..5087)
                     /locus_tag="PXE26_001964"
     CDS             complement(4740..5087)
                     /locus_tag="PXE26_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594524.1"
                     /translation="MEIKTVTFSKVITAFIFHIITLFVFTQLNEQAQATFMFFWWFFI
                     SLRFILVVGIMCVGIEELKIQEYRQTKAYACFSFISNFALCLQFVYFEHLIAAILFLI
                     SYIIYHSQTVTIK"
     gene            complement(5151..5267)
                     /locus_tag="PXE26_001965"
     CDS             complement(5151..5267)
                     /locus_tag="PXE26_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HDL5594525.1"
                     /translation="MADIATVFHWTPNTFDEMTIVELGQWREKARLRNGVES"
     gene            complement(5291..5605)
                     /locus_tag="PXE26_001966"
     CDS             complement(5291..5605)
                     /locus_tag="PXE26_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HDL5594526.1"
                     /translation="MKKVTLKQGILRGEKRITEIEVRKPLTKQLRGTNLTSLMQLSVD
                     EWCIVLPRITTPKLDKADFATMSAADLLKLSGKALDLMSEDFDEADEEDSEEQGKGEI
                     LA"
     gene            complement(5684..6190)
                     /locus_tag="PXE26_001967"
     CDS             complement(5684..6190)
                     /locus_tag="PXE26_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HDL5594527.1"
                     /translation="MGLPAKLKNFNFSVDGTSYLGETTEVTQPKLAMQLEDYRAGGMI
                     APVGVNMGLEKLELEFKIGGHEEDLLKLFGGSISGNAFRFNGAYQHDDDDSVDAVELV
                     CRGRIAEIDEGSSKAGDDTEHSYKASLTYYKKTVNGVDIIEIDTLNQIYIVDGKDRLA
                     EIRKAMGL"
     gene            complement(6199..7380)
                     /locus_tag="PXE26_001968"
     CDS             complement(6199..7380)
                     /locus_tag="PXE26_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath protein"
                     /protein_id="HDL5594528.1"
                     /translation="MSILDTYLHGVEVVEVNAGGVTISTAATSVIGVVCTGDQADAET
                     FPLNTPVLITNPLNYLEKAGSTGTLRRTLNSIGSIVKTPTVIVRVAESDDSDTLTANI
                     VGTQENGKFTGIKALLTAQSTVFVKPKLLCVPQHDNQAVATELLSVAKKLNAFAFISD
                     NGATTKEQAYTYRQNFSQREGMMIFGDWKSYNTDKKAYDTDYAVARACALQAYIDKTV
                     GWHKNISNVELDGVTGITKAVEFDINESSTEANYLNEKGITICLNHNGFRYWGSRTLA
                     TDTRWAFQQSVRTAQIIKETIGAGLAWAVDMPLTPLRVKTMLEAINNKLRSWASGDDP
                     RILGARVWVAEEITADIIKSGKFVIKYDYHWIPSLESLGLEQRVNDEYVVDLVNTLKA
                     L"
     gene            complement(7487..7633)
                     /locus_tag="PXE26_001969"
     CDS             complement(7487..7633)
                     /locus_tag="PXE26_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594529.1"
                     /translation="MLAEKPKKRWRFWYAFVNGLFFDKKHCYAAYKAEVYRKQYPPEF
                     TEIT"
     gene            complement(7786..8028)
                     /locus_tag="PXE26_001970"
     CDS             complement(7786..8028)
                     /locus_tag="PXE26_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594530.1"
                     /translation="MTKKHYCTGWRSAPANINSCCHQHDRDYGIRGTVTRADADKRLR
                     ECMIKNGNPIRAWLFWLVVRAFGWRFYKNKEIKIEK"
BASE COUNT         2355 a         1668 c         1652 g         2460 t
ORIGIN      
        1 tataccttta gttatatact catcaaaaat aaggagttcc taatggatac tttggcaagt
       61 cgtttgaaaa tcgttttaga ccaaaaaggt ttaacacagg aaaaatttgc agaacaaata
      121 ggtgtttcac agccatctgt ttttaaaatc ctgaatggac aaactcgaaa tcccacaagg
      181 atttatgaaa ttgcaaacgt cctagatgtc gatgtaaatt ggctcaaaac cggcaaaggc
      241 gaagcaccag attttgcgaa aatcggaaaa aatccgaccg cttatgaaga ggaaagctca
      301 atgcttcgac ttgaggtgtt agatgtatat gcctctgccg gcaatggtag ttttgtcacg
      361 ggagacttaa ccgcttacac gcacgcagta gaatttgaaa atgcctattt tgcacaagtc
      421 tttcaacgtg caaatgccaa aggcttatca attattaatg tagatggcga ctcaatggag
      481 ccaactatcg gtaacggtga tttgctgttc gtagatacca ctaaatccgc ttatcaaggc
      541 gatggtgtct atgttttcag ctatggcgaa aacttatatg taaaacgctt gcagttcgcc
      601 ggtgatgaat tgttagtcat ttccgacaat ccgctttata aagagtggag aatcacatca
      661 gaaaatgagc ataaattcca aattcacggt aaagtggaat ttatgcaagg gcatattagg
      721 agggtttagg tgatggaaca tcaaaatcta actcatcttg tctatattac atcacataaa
      781 caaattggag tttattcgat ttctaatttg aatattgatg acctttactt caaaggttac
      841 tgtattcaga aaaatagagt tatcacatta agagctgatc gcattattaa acaatttgat
      901 gatttagctc ttgccgaaaa ttatgccaaa aatattcctc aagatgtgtt ttatctattt
      961 gattctcttc tgaaccagca acgaaaagaa aaaataacac cgatctataa aatcggtttg
     1021 tgttttactg gatttaagca agctagaaaa aatgaattaa ttcaactagc agtagataat
     1081 gatttgagag tagtacaaaa cgtaactggt gcagttgatt ttttaatttt cgataaagag
     1141 tcgaaaactg ttggaccagc aaaactagca aaagctgaaa agttaggaat taaaatcatc
     1201 gatgatgaag aatttttata tatgttagaa actggcgttg tgccggatta ggtttgactt
     1261 ctcaatagat gtttatacca aaatcatcta aactaaaaac taacaattac atagaagaat
     1321 taaacatcaa atcaataggg gaaaccgata tgaaaaaagc acttacacta cttgcactat
     1381 cactatttgc attgcctgta caagccgata gcctcgaact tgctcgtaat aaagtaaagc
     1441 aaatttttat cagtgatgaa gagccaaagg taaaagatgc gacttggact gcaccattta
     1501 tctttaaggt tggagttttt gatgacggca cgaaaagaga tggctacgcc gaatatgttt
     1561 gccaagtttt atacgaccac ggatttaaag gtaaaggtgt gttggttagc gtaatcgata
     1621 taaaaaaact agtccaaaca ggtgattggg ttgatcttgg caaagctaaa tgtcagtaat
     1681 acataaggga cagattattc tgtctctttg tatttaatca ttaatgaaga aaccttttta
     1741 ctacacagtt aatactatat tttataatgg ggttcataat gaaaaaatta gtcctctcga
     1801 ttttatttgt tatttcgcct atggctttgg cttatagctg caatgaccct atcccttact
     1861 gcaaagaaat gcaatcttgc gagcaagcaa agttttattt aaatcaatgc aatgccggtc
     1921 gattagatag agataacgat ggcatacctt gtgaaaatgt ttgtggcaag aaaggaaagt
     1981 ccgagaaaaa agacgataag aaatcagata aatcaaaatc taaaaaaact tcaaattaga
     2041 gacaggcgtt gtgcctgatt aaaaggggta atgatgaata accagtcagt ttggcactta
     2101 ttttgcgatg aatccggtat aagcggtaag cctttttatg ctttcggtgc attatggata
     2161 agagaagata aaattagctt atttgaaaaa gaaatacaga aattacgaga aaagcactat
     2221 tgcactgatg aaataaaatg gcaaggtaca aattctaaac gctttagtga attttatcgt
     2281 gaattggtta gttttttctt tcaggctgat tatttatttt ttaactgtat tgtagttcaa
     2341 caagctattg tcaataaagc ttttcataac ggtgattatg aaatggcaaa acagaagcat
     2401 tttaatttat tgatttgcaa caaaattgaa caatccttat ataaaaacag aataaatagg
     2461 tttgttttat ctgttgatga tctacctttt aaatacaata aagctgatga ggcaatgcac
     2521 attatcgcta ataatataat tcgtaaaaag actgccgtag caaatgctat tctagcatta
     2581 aacgaagtag attctcgtaa atcatctggc gttcaactat gcgatttatt attaggagca
     2641 atattaagta gctatcaaaa tgatattaca tcggaacgta aaaaagaact aacaaaatgg
     2701 attgctttgc acctaggttg ggataaatta acttatgata ctttacagga ggaaaagaaa
     2761 tttaatattt ggtattttta cgaccctaca aaaggaccta gaatagtaag aacgagagaa
     2821 acaaaactta aatacccact attaaaaaag aaagagcaga ccttccagcc tgcacggtga
     2881 gtgtcctcaa ggacttatat gtgtaaaaca acgcccaatt tcctcactgg gcggaatcac
     2941 acaaagtagc cgcccctatg attctttgtg ttttatgtaa ataaatctgt aactttgatt
     3001 aatattactt gttcaagatc agagatgcaa ggctttttta tagtgatttt ataaaaatag
     3061 cgttagtctt cagacttcgg cttcaactcc atctctaacg ctgtcgtaaa cccaccacct
     3121 ttatttaaac tgtgcgtaac ctgcgaaatt atccactcgt tgctatcaat ctccgcctta
     3181 aagcctgaaa cctgaaccgg taattcgggg ataagctccg cattgccctc ggcaagagtt
     3241 aggctaaaag ttgccacacc tcgttgtagt ttttcaaaat tccgtttaca agcattaatc
     3301 gctgattgtg cggtagcgta agtatggggt agggttttaa ttgcctcgct atcactttca
     3361 atcggtttac tttgcaccac tgcattaact tgcctgcctt tgccttttac aaagacggtc
     3421 tctttaatgc tcttgccgtc tttgcctttt atcggcttgc cgtctgcccc acgttttact
     3481 ttagtctttt tccgcattgt gggcttagtc acttttttaa cttggctgtt ttcgtcccac
     3541 gtcacctcgc ctcgcttgcc ggtttgcgtg ttgtgccaat aggctttaac cgctttgtag
     3601 ttatcccctt cggcaatcga aaagctatgg gaatcccccg aactgcgggt aatgcgaaac
     3661 aggggtaaca gtttaccgct tgcggttgtg gcgtttccgg ctttaatgaa aatcaaattg
     3721 ccgtttttca cggtagcaat ggcatcaaat tgttctgcga ggcgttgcaa gagattaata
     3781 gagctttcgt ttgtttggtc aatgtgtttc acctcttcgt tttcaaactc cttgcccacc
     3841 atcggcttga gtttgttctc ttcggcgatc tgtttcacaa ttttaccaat ggtggtgcgg
     3901 tgaaagctcc gctcgtggcg attggtcagc gtgcctcgca aatcagcact tcttgcccga
     3961 atcgtgactt tatcaggtgg gccatcgtgg gttagctcgt ccaccgtgta ttcgcccttg
     4021 taggtcaggg ggctgttttg ccagcctaac ccgaccgata aaatcgctcc tcgacttggc
     4081 aaagcgagta agccatcagt gtcgtccagc tctaaatcca gctggtctgc ctcaaagcct
     4141 cggttgtcgg ttaaggtgag ttgaattaag cggtgcgtga tcagggtgga aatatctttg
     4201 gctttttcgc cctcattatc tttgcttggc tttgggcgaa ccgtcaccga aacagccggt
     4261 gtgcggtggt tatgattggt tagctctgtt aaaaaatcca ttaaataaac cctgcgacct
     4321 catcaataat attggcgagc agactatcat caacccgttt aagcgacatc gaaaagctaa
     4381 ttgcccgggg cgtgccgtct gcaaaaaagg tggtttcctg ctcgctgatt cgatcaatca
     4441 caaaccagcc tagcaccata aaggttgaac cactaatcaa cggataagcc gagccttgct
     4501 ctgccatcat ctcaagggca aggattgaca ttttgccccc ggtaatttca gggcgtagct
     4561 cggctgaaat ctccattgtc tcccctgcct tgccggtaaa ttggcttttt ggcattgccc
     4621 caaccacatc attttgaacg tgcgaccagt tcatttctcg gctggtgtct tgataaggga
     4681 ttgtcaatcg cataaacaca aaatagccta gcgacatcat tgcgaattgt tggagcatat
     4741 tatttaatcg ttacagtttg gctatgatat atgatgtaag aaatcaaaaa taaaattgcc
     4801 gcaataagat gctcaaagta aacaaactgc aagcataacg caaaattgga tatgaaacta
     4861 aaacaagcat aagcttttgt ttgtcggtat tcctgaattt taagttcttc aataccaaca
     4921 cacattattc caactacaag gatgaatcgc agagaaatga agaaccacca aaagaacata
     4981 aaggtagctt gagcttgctc attaagttga gtaaaaacaa ataacgtaat gatatgaaaa
     5041 atgaatgctg taatcacttt actgaatgta actgttttaa tttccatttt aaaatcctta
     5101 tagcaagcgg tcgagttttg caaatttttt gcgaaaaacg accgcttgtt ttaactttcc
     5161 accccatttc gtaagcgggc cttttctcgc cattgcccta gctcgacaat cgtcatttca
     5221 tcaaaggtgt tgggtgtcca atgaaacacg gtagcaatat cagcaatagc gtcatcaaca
     5281 aactgtggaa ttaggctaaa atctcgccct ttccctgttc ttcgctgtcc tcttcgtctg
     5341 cctcatcgaa gtcttcgctc attaaatcta aggctttgcc ggagagtttt agcaaatccg
     5401 ctgccgacat tgtggcaaaa tcggctttgt ctaattttgg cgtggtaatg cgtggcagta
     5461 caatacacca ctcatcaacg cttaactgca ttaatgaggt aagatttgtg ccacgcagtt
     5521 gtttggttaa tggcttacgc acctcaatct cggtaatacg tttttcacca cgcaaaatgc
     5581 cttgttttaa tgttactttt ttcattgttt aatccttaat tatttatcat taaaagcccc
     5641 ttgaaaaaag gggaaggggc tttgggaaaa tttaggggaa aatctataaa cccattgcct
     5701 tacgaatttc cgctaagcgg tctttgccat cgacaatgta aatttggttg agggtgtcga
     5761 tttcgataat atcgacaccg ttcaccgttt ttttgtaata ggttagcgag gctttatagc
     5821 tatgctcggt gtcatcaccg gctttgcttg agccttcgtc aatttcagcg attcgcccac
     5881 ggcagactaa ctctaccgca tcgactgaat cgtcatcgtc gtgctggtac gcaccgttga
     5941 aacggaacgc attaccactg attgagccac caaatagctt gagcaaatcc tcttcgtgtc
     6001 cgccgatttt gaactcaagc tccagtttct ctaaacccat attgacaccc acaggggcaa
     6061 tcattccgcc tgctcggtag tcttcaagtt gcatagccag tttcggctgt gtgacttcgg
     6121 tggtttcgcc caaatagctt gtgccgtcca ccgaaaaatt aaaattctta agttttgccg
     6181 gtaatcccat ttttacctct ataacgcttt aagtgtattg actaaatcca ctacatattc
     6241 atcattgacc cgttgctcta agcctaggct ttcgagggac ggaatccaat ggtaatcgta
     6301 tttaataaca aatttgcctg atttgataat atctgcggtg atctcttcag ctacccacac
     6361 acgagcacct aaaatgcgag ggtcatcacc cgatgcccaa gagcgtagct tgttgttaat
     6421 cgcctctagc attgttttca cacgcaacgg tgtgagtggc atatccaccg cccaagctaa
     6481 gcctgctccg attgtctctt taatgatttg agccgtccgc accgactgct gaaacgccca
     6541 gcgggtatcg gtggcaagag tgcgggaacc ccaatagcgg aaaccgttat ggtttaagca
     6601 aatggtaatg cctttttcgt tcaggtagtt tgcctcggtt gagctctcgt taatatcaaa
     6661 ctctaccgct ttagtgatac cggttacacc gtctagctct acgtttgaga tgtttttatg
     6721 ccagccgaca gttttgtcga tataggcttg caacgcacaa gctcgggcca ctgcataatc
     6781 ggtatcatag gcttttttat cagtgttata agatttccag tcaccgaaga tcatcattcc
     6841 ttcacgctga gagaaattct ggcgataggt atatgcctgt tctttggtgg ttgcaccgtt
     6901 gtctgaaata aacgcaaacg cattcagctt tttagccacg cttaatagtt cggtcgcaac
     6961 ggcttgatta tcgtgctgtg gtacacaaag caatttcggc ttaacaaaca cggttgattg
     7021 agcggttaat aacgccttaa taccggtaaa tttgccgttt tcctgcgtgc cgacaatatt
     7081 tgcagttaag gtgtcgctat cgtccgactc ggcaactcgc acgatcaccg ttggcgtttt
     7141 aacgattgag ccaatcgaat taagtgtgcg gcgtaacgtg ccggtgctac ctgctttttc
     7201 aaggtaattt aacgggttag taattaaaac gggcgtattc agcggaaaag tctcggcatc
     7261 ggcttggtct ccggtgcaaa ctactccgat aaccgaagta gcagcggtgg aaatggtgac
     7321 accacctgca ttgacctcaa ccacctcaac accgtgtaga taggtatcta aaattgacat
     7381 agtattcctt aattgggaaa ggttagggtt gaatgttggg gtaaacttta aaaaataacc
     7441 gctcgggttg cgagcggttc gggctgtgaa atggggttta acaggattaa gtgatttcgg
     7501 taaactccgg tggatactgt tttcgataca cctccgcttt ataggctgca tagcaatgct
     7561 ttttatcaaa aaacaagcca ttcacaaacg cataccaaaa acgccaacgc tttttcggct
     7621 tttccgcaag cattgcacca cggtaacaac ggctgctgga aaaggtagcg gagcttgttt
     7681 aaattgcgct acactttgct tgcttgcttg cttgcttgct tgcttgcttg cttgcttgct
     7741 tgcttgcttg cttgcttgct tgcttgcttg cttgcagtat tatctttatt tctcaatctt
     7801 aatctcctta tttttataaa aacgccaacc aaaagctctc acaactagcc aaaataacca
     7861 agccctaatt ggattgccat ttttaatcat acactcacgt aagcgtttat cagcatctgc
     7921 tcgtgttact gtgccacgaa tgccgtagtc tcggtcatgt tgatgacagc aactgttgat
     7981 attggctggt gcgctacgcc agcctgtgca gtagtgtttt ttagtcactt aaaactcctg
     8041 agtcacataa atttgagata aaaatgagtc tgacagtaat gtcaactcat gcgttgtttt
     8101 atactgcaaa tcaacaatgt cacctacttt taaat
//
LOCUS       DANLZD010000116         8041 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.116, whole genome shotgun sequence.
ACCESSION   DANLZD010000116 DANLZD010000000
VERSION     DANLZD010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8041)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8041)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8041
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.116"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            88..753
                     /locus_tag="PXE26_001971"
     CDS             88..753
                     /locus_tag="PXE26_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HDL5594531.1"
                     /translation="MNFTTYFSDENKRRSLILLSLFHIFIIAISNYLVQISFEVQVPL
                     TEFSFPTTWGTLTFPFIFLATDLTVRVFGADLARKIIFVVMFPALVISYVISVLFFET
                     QFQGFSALTEFNFFVFRIALASFAAYLVGQLLDVLVFNSLRQGKRWWLAPTCSTIFGT
                     LIDTFVFFAIAFYKSSDEYMAEHWFTIGSVDYAFKLFVSLLLFLPLYGVILNFIMKKL
                     DLK"
     gene            839..1642
                     /gene="map"
                     /locus_tag="PXE26_001972"
     CDS             839..1642
                     /gene="map"
                     /locus_tag="PXE26_001972"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HDL5594532.1"
                     /translation="MNNIPLRNEEEIQKLRVACKLASDVLVMIAPYVKEGVTTGELDK
                     ICHEYILANGATSASLGYHGFPKSVCISLNEVVCHGIPSDDKKLKKGDILNIDVTVIK
                     DGYYGDNSMMYVVGEPSVRDKRLMAVTLESLYVGIRTVKAGVRLKEIGTAIQKYVEKE
                     GFSVVREYCGHGIGTEFHCDPQVVHYATDDGGVVLKEGMVFTIEPMVNAGKKEVRLMG
                     DGWTVKTKDRSHSAQYEHQIVVTKDGCEVLTIRDEEIAEGRISRIMHNS"
     gene            complement(1758..3172)
                     /locus_tag="PXE26_001973"
                     /pseudo
     CDS             complement(1758..3172)
                     /locus_tag="PXE26_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605131.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sucrose transporter subunit IIBC"
     gene            complement(3479..4129)
                     /gene="thiQ"
                     /locus_tag="PXE26_001974"
     CDS             complement(3479..4129)
                     /gene="thiQ"
                     /locus_tag="PXE26_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter ATP-binding protein"
                     /protein_id="HDL5594533.1"
                     /translation="MIELDLHFTYEQMNMHFQLSVKKGERIAVVGESGAGKSTLLNLI
                     AGFEKAESQQSQLWLNQKNHLDTEVAQRPVSMLFQDNNIFPHLTVEQNIGLALVPSLS
                     LNPKQKAQVKQIATQMGIETFLQRQADQLSGGQKQRVALARTLLRDKPILLLDEPFSA
                     LDPQRRAELQQIVFDICQSRNLTLLMVTHQLSESLFLFNRVITVADGEIVSDLSPL"
     gene            complement(4126..5700)
                     /gene="thiP"
                     /locus_tag="PXE26_001975"
     CDS             complement(4126..5700)
                     /gene="thiP"
                     /locus_tag="PXE26_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine/thiamine pyrophosphate ABC transporter
                     permease"
                     /protein_id="HDL5594534.1"
                     /translation="MLSTLTKTTAWFIYFSIIALYVFSLWALMDYHQNDTLFVFSDIT
                     ATVAYSLLQASLSAVISLFLGSLLARSFFYLDFKGKNLLYKTISFIWALPSLVIIFAV
                     IGVFGNSGWLAKLFQQLGWNWQFNLYGLHGIILAHCLFNIPFVMKYYTGGLQLTPSSR
                     FQLAAQLNLTGWNYIQIVELPIIKTLLPYMFMTVFLVCFTSFPIVLMLGGSPKYSTLE
                     VAIYQAVTFEFDFAKALILIGVQFVVGIGLQLVMNYISTSALKKLKQQPNRVEIWKPK
                     PTGLAKLGLQAVIFLQSFAIILPLVSVIWAGLSVSKLSERLLNPTLWQATQYSLYLSL
                     IASIFVITISYLIALEARQLLYTKAKLRYSILTAITLFPLLLPIFLLSVGLFILLMNS
                     ELSSEALLLLVGICNGLTLLPFIYPMLFSAMWNSLTSHDKLAQGLGLKGLRRWWIVEK
                     NQLIRPLVTVFALAMSSSLGSFTVIAFFGNADFSSLPYLLYQQLGSYRTEDAAVTALI
                     LMLFALLPFLFSKDKL"
     gene            5961..6218
                     /gene="ptsH"
                     /locus_tag="PXE26_001976"
     CDS             5961..6218
                     /gene="ptsH"
                     /locus_tag="PXE26_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003038086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein Hpr"
                     /protein_id="HDL5594535.1"
                     /translation="MYSKDVVITAPNGLHTRPAAEFVKAAKGFASDITVTSGGKSASA
                     KSLFKLQTLGLTQGTTITISADGEDEQKAVDFLVDLIPTLE"
     gene            6340..>8041
                     /gene="ptsI"
                     /locus_tag="PXE26_001977"
     CDS             6340..>8041
                     /gene="ptsI"
                     /locus_tag="PXE26_001977"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-protein phosphotransferase
                     PtsI"
                     /protein_id="HDL5594536.1"
                     /translation="MITGIAASPGAVFGKALVLKEEPIVLNTRKITESEVEAEKAKFF
                     TGREKAAAQLTAIKEKARRTLGEEKEAIFEGHLMILEDEELEEEILSYLTDNLVTADV
                     AASKVIEMQASMLAEIDDEYLKERAGDIRDIGNRLVRNILNMNIVDLGDIQDEVILVA
                     YDLTPSETAQLNLDKVLGFITDVGGRTSHTSIMARSLELPAIVGTNNVTSLVKTGDFL
                     ILDAVNNEVHLNPSEEKIANFKALQEKLNAEKEELAKLKELPAQTLDGHKVDVAGNIG
                     TIRDVEGVLRNGGEAVGLYRTEFLFMDRTQLPGEEEQFQAYKEIVEAMNGQMVILRTM
                     DIGGDKELPYLDLPKEMNPFLGWRAVRIGFTRREILDTQLRAVLRASAFGNLAVMFPM
                     IISVEEIRLLKSIVAELKDQLRAEGHAFDENLKLGIMVETPSAAVNARHLAKEADFFS
                     IGTNDLTQYTLAVDRGNEIIAHLYNPLSPSVLNLIKQVIDASHAEGKWTGMCGELAGD
                     VRATALLLGMGLDEFSMSGISVPHVKKLIRSINFADAKALADEALAQPTAADIERLVD
                     E"
BASE COUNT         2472 a         1458 c         1737 g         2374 t
ORIGIN      
        1 agcttgattt ttatgggaaa atgtatagaa taatgccccc ttgagttccc ttacctcaag
       61 ttttcattta acgaaaaagg atacaatatg aactttacta cttatttttc ggatgagaac
      121 aaacgtcgtt ctctaatttt actttcactt ttccatattt ttatcatcgc aattagcaac
      181 tatttagtgc aaattagctt tgaagttcaa gtaccactaa cagaatttag ctttccgaca
      241 acttggggaa cgttaacatt cccatttatt ttcttagcga ccgatttaac cgtgcgtgta
      301 tttggtgcag atcttgctag aaaaattatt tttgttgtga tgtttccggc acttgtcata
      361 agctatgtga tttccgtttt attctttgaa acccaatttc aaggctttag tgcattaact
      421 gagttcaact tttttgtttt ccgtattgca ctggctagct ttgcagctta tttagttggg
      481 caattattag acgttctagt atttaatagt ttaagacaag gtaagcgttg gtggcttgct
      541 ccaacctgtt caaccatttt tggtacttta atcgatactt ttgtattctt tgctatcgcc
      601 ttttataaaa gtagcgatga atatatggca gagcattggt ttactattgg ttcggtcgat
      661 tatgcgttta aactctttgt gagcctactg ctatttctac cgctttatgg tgtgatatta
      721 aatttcatta tgaagaaact tgatttaaag tagaaatcta aactgaggtt tggggattgt
      781 gctgaaaaaa ggtataatcc ccttactttt tatggcagat atagcagaga gcaatgtaat
      841 gaataatatt ccattaagaa acgaagaaga aattcaaaaa ctacgagtag cctgtaaact
      901 ggcttcagat gttttagtaa tgatcgcccc ttatgtgaaa gagggcgtaa caactggtga
      961 attagataaa atttgtcacg aatacatttt ggcaaatggg gcaacttcag ccagtttggg
     1021 ctatcacggc ttcccaaaat cggtgtgcat ttcgttaaat gaggtcgttt gtcacggtat
     1081 tccaagtgat gacaaaaagc tgaaaaaagg cgatatttta aacatcgatg tgacggttat
     1141 caaagatggc tactatggcg ataactcgat gatgtatgta gtcggtgagc caagtgtgcg
     1201 ggataaacgc ttaatggcgg ttacgctaga gtccctttat gtcgggattc gcaccgtgaa
     1261 agcgggggtg cgtttaaaag aaattggtac agcgattcaa aaatatgtgg aaaaagaagg
     1321 cttttcggta gtacgagaat attgcggaca cggtattggt actgaattcc attgcgaccc
     1381 acaagtagtg cattatgcta ccgatgatgg cggtgtagtg ttaaaagaag gaatggtgtt
     1441 tacgattgag ccaatggtga atgccggcaa aaaagaagtc cgcttaatgg gtgacggttg
     1501 gacagtgaaa accaaagacc gcagccactc cgcacaatat gagcatcaaa ttgtagttac
     1561 caaagacggc tgtgaagtgc tgacaattcg tgatgaagag attgccgaag ggcgtatttc
     1621 tcgaattatg cacaacagct aatttgcaaa tttttagcga aaaatgaccg cttgcgaaac
     1681 tcattgttaa gctaaggcgt ttaaaaacaa aagggattaa gctaacactt aatccctttt
     1741 ttgtgatcta tttttgatta tttcgcttgt gcttttttca cccaaatggc tgaaatggta
     1801 aatgcaacta caaatgaaat taccataccg acagaataca ttgcaaggct gtcaggttta
     1861 atcgacggaa tacctaagaa accggctgca cctaaggcaa ttgctttcac attaaagaaa
     1921 gcgataaatg cactggctaa acctgaaccg atcatcgccg caataaaggc ttggcggtag
     1981 cgtaaattta ctccgaacat tgccggttga tacctaacag ggctgaaata cctgacggca
     2041 cggctaaacc acgcactttg gcatctttca ttgcaaaagc tacacctaaa caggctgcac
     2101 cttgtgcaat gttagacatt gctgcaatcg ggaagataaa tgtaccgccg gtttgtgcta
     2161 cttcagctaa taattgggtt tcaaccgcaa taaaggtttg gtgcataccg gtaatcacga
     2221 ttggagcgta gaatgtaccg aaaattgctc caccgataaa gcctaagctg tcatataacc
     2281 acgttaagcc tgctgaaatc gctgaacctg cttcacgacc caatggtccg attacagtga
     2341 aagctaaaat accggcgata aataatgaca tcattggcgt caccaagtta tctaaatagc
     2401 ttggcacaaa tttacggaaa gttttctcaa gggttgctaa cacccaagcc gaaacgatag
     2461 ttggaataac cgtgccttga taacccactt tttcaatttc taagccgaaa atattccagt
     2521 atttgatgtt accttccatt aaggttttgg catagttcca accgtctgca agtgccgggt
     2581 gaaccaataa cataccaagt gccgcaccta agaatggatt accgccaaat ttgcgtgtag
     2641 ctgagaaacc gagtaataca ggtaagaata caaatggtgc gttagcaata gtgttgatga
     2701 aatcaactaa atcggaaata ttcggataac ggctaacaac agattcacct tcccagaaga
     2761 aaccgactgc cgttagcatt gagtgaatac ccattaacaa accgccagcc acaatagccg
     2821 gaatgatcgg cacgaaaata tcggctaagc cttttaccaa acgttgtagt aatggctgat
     2881 ttgctgcacc ggcagccgct acttcagagg tggacatatc tgccataccc atttgttttt
     2941 gcatttgggc atacacttca tttaccgtgc ctgatccaaa aataatttgg tattgaccgg
     3001 gagtagagaa ttgacctttc acgccttcaa tattttcaat cgcctcttta tcaattttgg
     3061 attcatcagc aatggttaag cgtaaacggg ttgcacagtg ggcaagtgtg gtaatgtttt
     3121 ctttgccacc taattttgca atcgtttgtt ctgcaatttt tggatagttc atttgaattt
     3181 acctttcata aaaaataatc ggttgcattt taactaaatc ggtttagcta aaaaagagaa
     3241 gatttaaaat atttccaaat ttgtgaagta gatcacattt tggggaagag aatagcggaa
     3301 tagggaggta atattagtta cagttcccct ctttgctaaa gtagggggcg agttctgaaa
     3361 aaaatgaata acgctagtat ccgtgcggaa catcattcac cgttagattg ttggaattga
     3421 catcgttgcg tacgccagcg tggcgtccct acatttagaa cctagcagat ctgctttgct
     3481 aaagagggga gagatcagaa acaatctccc catctgctac cgttatcacc cgattaaata
     3541 gaaataggct ttcggatagt tggtgagtta ccattaacag ggttagattt ctgctttggc
     3601 aaatgtcaaa cacgatttgc tgtaattcgg ctcggcgttg cgggtcgagg gcggagaagg
     3661 gttcgtccaa taataaaatc ggcttatccc gcaacaaagt acgagctaat gccactcgct
     3721 gtttttgtcc gcccgatagc tgatcggctt gacgctgaag gaaggtttca atccccattt
     3781 gtgtggcaat ttgtttaacc tgtgcttttt gtttcggatt gagcgacaaa cttggtacta
     3841 aagctaagcc gatgttttgt tctaccgtta agtgcgggaa aatattgtta tcttggaata
     3901 gcattgaaac aggacgttgt gcaacttcgg tatcaagatg atttttctga tttagccaca
     3961 gctggctttg ctgactttct gccttttcaa aaccggcaat tagattaagt aatgtgcttt
     4021 tgcctgcgcc actttcgcca accactgcaa tacgttcgcc ttttttgaca gaaagctgaa
     4081 agtgcatatt catttgttcg taagtgaaat ggagatccag ttcgatcata gtttatcctt
     4141 gctgaataag aatggtagta acgcaaataa catcagaatg agtgcggtaa cggcagcatc
     4201 ttcggttcta tagctaccaa gttgttggta gagtaaataa gggagtgagc tgaaatcagc
     4261 gttgccgaaa aaagcaatga cggtgaaact gcctaagctc gatgacattg ctaacgcaaa
     4321 tacggtaaca agcggtcgaa ttagttgatt tttttccaca atccaccaac ggcgaagccc
     4381 ctttagccca agtccttgtg ctaatttgtc gtgcgaggtg aggctattcc acattgcgga
     4441 gaaaagcatt gggtaaataa atggcagtaa tgttaagccg ttgcatatcc cgaccagtag
     4501 cagtaatgcc tcgcttgaga gttcactatt cattaataaa ataaacaaac caaccgataa
     4561 taaaaagatc ggcagaagta aggggaatag ggtgattgcg gtgagaatgc tatatctgag
     4621 cttggctttt gtatagagta attggcgagc ttcaagtgca atcaaatagc tgattgtgat
     4681 tacgaatata gaagcaatta aacttaagta taaagaatac tgagtagctt gccataaagt
     4741 agggttgagc aaacgctcac tgagttttga cacgcttagt cctgcccaaa tgacgctgac
     4801 aagcggtaga attattgcaa aactttgcaa aaaaataacc gcttgtaagc cgagtttagc
     4861 cagtccggta ggctttggtt tccaaatttc tactcggtta ggttgctgtt ttagcttttt
     4921 gagtgcagaa gtcgagatat aattcattac taattgtaag ccaatgccca ctacaaattg
     4981 taccccaatt aagatgaggg cttttgcaaa atcaaattca aaagtgaccg cttgataaat
     5041 ggcaacttca agcgtgctgt attttgggct accgcctaac attaatacga ttggaaaact
     5101 ggtaaagcag accagaaaaa cagtcataaa catataaggc agcaaagttt tgattatcgg
     5161 tagttccaca atttggatat aattccaacc tgttaggttt aattgagccg caagctgaaa
     5221 gcgactgctt ggagtcaatt gaagccctcc ggtataatat ttcatcacaa acggaatgtt
     5281 aaacaggcag tgagccaaaa tgatgccgtg caagccgtat aaattaaatt gccaattcca
     5341 accgagttgt tggaaaagtt tggctagcca gcctgagtta ccaaatacgc caattaccgc
     5401 aaaaataatt actagtgagg gtaatgccca gataaacgaa atggttttat agagtaaatt
     5461 ttttccttta aagtccaaat aaaagaaaga tcttgccagt aggctgccta aaaatagtga
     5521 aattaccgca gagaggctgg cttgaagtag gctataagcg accgtggccg ttatatcgga
     5581 aaaaacaaat aaggtatcat tttggtgata gtccattaac gcccatagac taaaaacata
     5641 gagagcaata atactaaagt agataaacca tgcggttgtt ttggttaatg tgctaagcat
     5701 attgctccaa atttagaata taagtgaaag aagtggtagc gaaattattg taacatttcc
     5761 gcttaagtgt gtgctagaat cttgatattc gacaaatgat ttttaagtta gcttaaaaaa
     5821 caccctattt agcagggtga tacgacgagt ttttgcgctt tttagcgtgt ttttaatttg
     5881 aatttgtagt aaagttgcgt gcgcaaaata aatggattaa aacaaatttt tttaactttc
     5941 aaatttaaga ggaagatttt atgtactcaa aagatgttgt tattaccgct ccaaatggtt
     6001 tacacactcg cccagcggct gaatttgtaa aagcagctaa aggttttgct tctgatatca
     6061 ctgtgacttc aggtggtaaa agtgcaagtg caaaaagctt attcaaatta caaacattag
     6121 gtttgactca aggcacaaca attacaattt ctgcggacgg cgaagatgag caaaaagcag
     6181 ttgatttctt agttgatttg attcctactt tagaataatt tttctattct cggatttaag
     6241 atttatgtca ctttattgta gcttaataag ctacaataaa gtgttttgct atgtaacatc
     6301 cagatgattt ttacatcatc ttaaattaag gacacaatta tgattacagg tatcgcagct
     6361 tcccctggtg cagtatttgg aaaagcattg gttttaaaag aagagccgat tgtactaaat
     6421 actcgcaaaa ttactgaaag cgaagttgag gcagaaaaag caaaattctt tacaggccgc
     6481 gaaaaagcag ctgctcaatt aaccgcgatt aaagaaaaag ctcgccgtac attaggtgag
     6541 gaaaaagagg cgattttcga aggccacttg atgatcttag aagatgaaga gcttgaagaa
     6601 gaaattttga gttaccttac tgataatctt gtgactgcgg atgttgcagc aagtaaagtg
     6661 attgagatgc aggcttcaat gcttgcggaa attgacgatg aatatttaaa agaacgtgca
     6721 ggtgatattc gtgatattgg taaccgcttg gtacgcaata ttttaaatat gaatatcgta
     6781 gatcttggtg atattcaaga tgaagttatt ttagtcgctt atgacttaac cccttccgaa
     6841 acagctcaat taaatttaga taaagtatta ggctttatta ccgatgtcgg tggtcgtact
     6901 tctcacactt ctattatggc tcgttcccta gagcttcctg ccattgttgg tactaacaat
     6961 gttacttccc tagttaaaac tggtgatttt ctgattttag atgcagtgaa caatgaagta
     7021 catttaaatc catcggaaga aaaaatcgct aatttcaaag cattacaaga gaaattaaat
     7081 gcggaaaaag aagaattagc caaattaaaa gagttgcctg ctcaaacatt agatggccat
     7141 aaagttgatg tggcagggaa tatcggtact atccgtgatg tggaaggtgt attacgcaac
     7201 ggtggtgaag cggttggttt ataccgtact gagtttttgt ttatggatcg tactcaatta
     7261 ccgggagaag aagagcaatt tcaagcctac aaagagattg ttgaagcaat gaatggtcaa
     7321 atggtcattc tgcgtacgat ggatatcgga ggtgataaag agttaccata ccttgattta
     7381 ccgaaagaaa tgaacccatt cttaggttgg cgcgcggtgc gtatcggttt cacccgccgt
     7441 gaaattttag atactcagtt acgtgcggta ttacgtgctt ctgcgttcgg taatttagcg
     7501 gtaatgttcc cgatgattat ttcggtggaa gaaatccgtt tattaaaatc catcgttgcg
     7561 gaattgaaag atcaattacg tgcagaaggt cacgcttttg atgagaactt aaaactaggt
     7621 attatggtgg aaaccccatc agcagcggta aatgcacgtc atcttgcaaa agaagccgac
     7681 ttctttagta ttggtactaa tgacttaacc caatatacac ttgcggtaga tcgtggtaat
     7741 gaaattattg ctcatttata taacccatta agcccatcag tcttaaactt aatcaagcaa
     7801 gttattgatg cttcacacgc tgaaggcaaa tggacaggta tgtgtggtga attagccggt
     7861 gacgtgcgtg caactgcgtt gttgctcggt atgggattag atgaatttag tatgagcggt
     7921 atctctgtgc cacacgttaa aaaactcatt cgctcaatta attttgccga tgctaaagca
     7981 ttagctgatg aggcgcttgc tcagccaact gctgcagata ttgaacgctt agtagatgag
     8041 t
//
LOCUS       DANLZD010000117         7926 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.117, whole genome shotgun sequence.
ACCESSION   DANLZD010000117 DANLZD010000000
VERSION     DANLZD010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7926)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7926)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7926
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.117"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            27..3098
                     /gene="fdnG"
                     /locus_tag="PXE26_001978"
     CDS             27..3098
                     /gene="fdnG"
                     /locus_tag="PXE26_001978"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:612..614,aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HDL5594537.1"
                     /translation="MQISRRKFFKVCAGGMAGTSAAMLGFAPATALAAPREYKLLRAK
                     ETRQTCTYCAVGCGMIMYSLGGEAMNSKGKLIHIEGDSDHPVSRGALCPKGAGALDYV
                     NSDRRVHYPEVREAGSSEWKRISWHEAIERIARHMKNDRDENFVTHNEAGLEVNRWMT
                     AGFLAGSACSNETGIVTQKFIRSLGMIFTDNQASIUHGPTVASLAPSFGRGAMTNHWV
                     DIKNSDLVIVMGGNAAEAHPVGFRWAVEAKKQNGAKLMVVDPRFNRSAAVADIYIPLR
                     PGTDIAFLLGAVNYLLKNDKIQHEYVKHYTNATFLLNEGFKFEDGLFTGYDEATRTYK
                     DKSTWAYQLDEQGQPKRDMTMQDPRCVINMLKDHVSRYTPEMVERITGTPQKDFLIFC
                     EEIAKTSAPDKAATFLYALGWTQHTVGAQNIRSMAIIQLLCGNIGVSGGGVNALRGHS
                     NVQGITDLGLFPHMLPGYIRLPTEADATLESYLNAIAPKTLVAGQVNYGQNNPKFAVS
                     MLKTFYGDKATKENEFGYHYLPKYPKGGTDHFRFIEQMYQGKVNGYFCQGMNPIASYP
                     NSQKLIKALSNLKYLVIFDPLITDTSEFWKNHGEFNNVNPSEIQTEVFRLPTTCFAEE
                     DGSIANSGRWLQWHWKAADAPHEAKPDVDILSEIRAELIHLYHKEGGKAPLEPLEAMT
                     WNYMNPLEPKPEEIAKENNGYALEDLKDADGNIIVKKGELLSSFTQMRDDGTTSGGCW
                     IYCGQWTPKGNQMANRDNSDPSGLGNTLGWAFSWPVNRRILYNRASADLSGKPWNPKR
                     QLVKWNGKNWNYVDVADYGTAPPNSPVTPFIMQPEGVSGLFVRERMQDGPFPEHYEPF
                     ETPIGTNPLHPNVISSPVARILPSDKEDLGTSDEFPYVGTTYRLTEHFHYWTKNALIN
                     VIAQPEQFVEIGEKLAEEKGIKNGDKVRVWSKRGEIKAVAVVTKRIRSLVSDGKPIHT
                     IGVPIHWGFAATTGAKKGYFANNLTVRTGEPNSNTPESKCMLLNIEKIVGA"
     gene            3101..4015
                     /gene="fdxH"
                     /locus_tag="PXE26_001979"
     CDS             3101..4015
                     /gene="fdxH"
                     /locus_tag="PXE26_001979"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit beta"
                     /protein_id="HDL5594538.1"
                     /translation="MSTVQTQNIIKISATSALTPAPQARSHQVEVAKLIDVTTCIGCK
                     ACQVGCSEWNDIRSDVNANCVGVYDNPADLNAKAWTVMRFNEVEENDRLEWLIRKDGC
                     MHCAEPGCLKSCPSPGAIIQYANGIVDFQSDKCIGCGYCIAGCPFNIPRMNPDDNRVY
                     KCTLCVDRVNVGQEPACVKTCPTGAIRFGSKEEMKFYAEQRIADLKSRGYENAGLYDP
                     EGVGGTHVMYVLHHADKPELYSGLPKDPKIDTTVTLWKDVLKPVAAVALGGLALAEVA
                     HYITVGPNVEEDLEEHHHSENAEGGKHE"
     gene            4008..4685
                     /locus_tag="PXE26_001980"
     CDS             4008..4685
                     /locus_tag="PXE26_001980"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HDL5594539.1"
                     /translation="MSKKFEITNDTKIVRHKPLARVSHWFLVISFFMTMFTGVAFFFP
                     DFAWLTEILGTPQIARAVHPFTGIIMFIAFIIMALIYWHHNIPEKNDIRWAKGIVEVL
                     KGNEHKVSDNGKYNLGQKLLFWTLILAMFTLLATGIIMWRQFFSHYFSIPMLRIAILL
                     HSASAFMLFTGILVHMYMAFWVKGSIRGMVEGWVTVRWAKKHHPRWYREEVLPELERQ
                     VAEQNNK"
     gene            4741..5658
                     /gene="fdhE"
                     /locus_tag="PXE26_001981"
     CDS             4741..5658
                     /gene="fdhE"
                     /locus_tag="PXE26_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory protein FdhE"
                     /protein_id="HDL5594540.1"
                     /translation="MSIKILPQDDIKQAASSFQQPELLFANPKNLYLRRAKRLRELAK
                     QNPFGEYMEFSANLVDIQLALLESQPIADYSQKITACVERTQGETPLNAQNFQRTDEW
                     RTLLLAIIEKFKPYANDTVLATIEVLEKAAKSELDTLADNLLNERYELVGADKAVFIW
                     AALSLYWVQLAQQLPRNSRAEIGHKHLCPVCNSAPVSSVIHFGEAQGLRYLHCSLCES
                     EWHVVRTKCTNCDETGKLDYWSLDTVEAAVKAESCGDCHSYLKVLYQDKDVNVEPVAD
                     DLATLFLDSEMEQKGLSRSGINPFLFQVE"
     gene            complement(5728..6114)
                     /locus_tag="PXE26_001982"
     CDS             complement(5728..6114)
                     /locus_tag="PXE26_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594541.1"
                     /translation="MLRNFMIMLHFIYGFAMKNAFSFFVISLFLTMNSISYASNPIPS
                     NKEKLNGVKKQQDKPKFRISERKVLKNKEKDEEVSNFSMEELRVGAQRPLDDSVIQYF
                     KSQCRYAFMSDREIIANRCEVKKIAD"
     gene            complement(6125..7495)
                     /gene="gorA"
                     /locus_tag="PXE26_001983"
     CDS             complement(6125..7495)
                     /gene="gorA"
                     /locus_tag="PXE26_001983"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009499791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HDL5594542.1"
                     /translation="MAKHYDYIAIGGGSGGIASINRAASYGQKCAIIEAKHLGGTCVN
                     VGCVPKKVMFYGAQVAEAINHYAPDYGFDITVNNFDYAKLVESRQAYIGRIHTSYGNV
                     LAKNNVDVLNGFARFKDAKTLEVSYADGSVEEVTADHILIATGGRPTVPNVKGAEYGI
                     TSDGVFALDALPKSVAIVGAGYIAVELAGVFNSLGVNTHLFVRQHAPMRNQDPLIVDT
                     LLEVLAQDGIELHTQATPQEVVKNADGSLTLKLQDGRETSVESLVWAIGREPATDKIN
                     LEAAGVETNERGFIKVDKFQNTNVPNIYAVGDIIEGGIELTPVAVAAGRRLSERLFNN
                     KPNEHLDYSLVPTVVFSHPPIGTVGLSEPKAIEQYGAENVKVYKSSFTAMYTAVTQHR
                     QPCRMKLVCVGEGEKVVGLHGIGFGVDEMIQGFAVAIKMGATKADFDNTVAIHPTGSE
                     EFVTMR"
     gene            complement(7572..>7926)
                     /locus_tag="PXE26_001984"
     CDS             complement(7572..>7926)
                     /locus_tag="PXE26_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HDL5594543.1"
                     /translation="NTVMLAVLNLIDVVMIANLLVMVIVGGYETFVSRLKVDDHPDQP
                     EWLDHVNATILKVKLSMAIISISSIHLLQTFINASNLDEKQMMWQVVIHLAFIVSALA
                     MAYIDKMLNSGHMKH"
BASE COUNT         2387 a         1738 c         1652 g         2149 t
ORIGIN      
        1 ctcacattat gtgatttgga gtgattatgc agatctcaag acgtaagttc ttcaaggtct
       61 gtgcaggtgg tatggcggga acttctgctg caatgttggg ttttgctcca gcaacagcat
      121 tagctgcacc gcgtgagtat aagctcttaa gagcaaaaga aactcgacaa acctgtactt
      181 actgcgcggt aggctgtggc atgattatgt acagcttagg cggcgaagca atgaacagca
      241 aaggaaagtt aattcatatt gagggtgatt ctgaccatcc agtaagccgt ggggcgttat
      301 gtccgaaagg tgcaggggcg ttggactatg ttaatagtga ccgccgtgtg cattatccgg
      361 aagtgcgtga agccggttca agtgagtgga aacgcatttc ttggcacgag gcaattgaac
      421 gtattgcccg ccatatgaaa aatgaccgtg atgagaactt cgtcacccac aatgaagcag
      481 ggctggaagt aaaccgttgg atgacggcag gtttcttggc aggctcggcg tgtagtaacg
      541 aaaccggtat cgtcacccag aagtttatcc gctctctcgg tatgattttt accgacaacc
      601 aagcgagtat ctgacacgga ccaacggtag caagtcttgc tccatcattt ggtcgcggtg
      661 cgatgaccaa ccactgggtt gatattaaaa actccgattt agtgatcgtt atgggcggta
      721 acgcagccga agctcaccct gtgggtttcc gttgggcagt tgaagcgaaa aaacagaacg
      781 gtgcgaagtt aatggtggta gatccacgct ttaaccgtag tgctgcggtg gcggatattt
      841 atataccatt gcgtccgggt acggacattg cgttcttgtt aggtgcggta aactacctgc
      901 ttaaaaacga caaaattcaa cacgagtatg tgaagcatta caccaatgcc acattcttac
      961 tcaacgaagg gtttaaattc gaagacgggc ttttcaccgg ctacgatgaa gccactcgta
     1021 cctataaaga caaatccact tgggcttatc agttagatga acagggtcag ccgaaacggg
     1081 atatgacaat gcaagatcca cgttgtgtga tcaatatgct caaagaccac gtttcccgct
     1141 atacgcctga aatggtagaa cgcattaccg gtacgccaca aaaagatttc ctgattttct
     1201 gtgaagagat tgcgaaaacc tcagcgccgg ataaagccgc caccttcctc tatgccttag
     1261 gttggacaca acacaccgtg ggcgcacaaa acattcgctc aatggcgatc attcagttgc
     1321 tgtgcggtaa cattggtgtc tccggcggtg gggtaaacgc actgcgtggt cactctaatg
     1381 tacaagggat taccgaccta ggcttgttcc cacatatgtt gccgggctat atccgcctgc
     1441 caaccgaagc ggacgcaacc ttagaaagct acttaaatgc gattgcaccg aaaaccttag
     1501 tggcagggca agtaaactac gggcaaaaca acccgaaatt cgctgtgagt atgctcaaaa
     1561 ccttctacgg cgataaggca accaaagaga acgagttcgg ctatcactat ttaccgaaat
     1621 acccgaaagg cggtacagat cacttccgct ttatcgaaca gatgtatcaa ggcaaagtga
     1681 acggctattt ctgccaaggt atgaacccga ttgcctctta ccctaactcg cagaagttaa
     1741 ttaaagcgtt gagcaatttg aaatatttag tcatttttga cccgcttatt accgatactt
     1801 ccgagttctg gaaaaatcac ggtgagttca acaatgtgaa cccgtctgaa attcaaaccg
     1861 aagtgttccg cttgccgacc acttgctttg cggaagaaga tggttcaatt gcgaactccg
     1921 gtcgctggtt acaatggcac tggaaagcag cagacgcacc acacgaggca aaaccggacg
     1981 tggatattct gtctgaaatc cgtgccgaac tgatccacct ttatcataaa gaaggcggaa
     2041 aagcaccgct tgaaccgtta gaagcgatga cgtggaacta tatgaacccg ttagaaccga
     2101 agccggaaga gatcgccaaa gagaacaacg gttatgcatt ggaagatctg aaagatgcag
     2161 acggcaacat catcgtgaaa aaaggcgaac tattatccag ctttacacaa atgcgtgatg
     2221 acggtacaac ctccggtggt tgttggatct actgcggtca atggactccg aaaggtaacc
     2281 aaatggcgaa ccgtgataac tccgacccat caggcttagg taacacctta ggctgggcat
     2341 tctcgtggcc ggtaaaccgc cgtattctat acaaccgtgc atcggcagat ttaagcggta
     2401 aaccgtggaa cccgaaacgc cagctagtta aatggaacgg taaaaactgg aactatgtgg
     2461 acgttgccga ttacggtaca gcaccaccaa atagccctgt gacaccattt attatgcaac
     2521 cggaaggggt atccggcttg ttcgtgcgtg aacgtatgca agacggtcca ttccctgagc
     2581 attatgaacc gtttgaaacg ccaatcggca cgaacccgtt acacccgaat gtaatcagca
     2641 gtccggtggc acgcattctg ccgagcgata aagaggattt aggcaccagc gatgagttcc
     2701 catatgtcgg tacaacttac cgcttaaccg aacacttcca ctactggacg aaaaatgccc
     2761 tgattaacgt cattgctcaa ccggagcaat tcgtggaaat cggcgagaaa cttgccgaag
     2821 agaaaggcat taaaaatggc gacaaagtac gtgtttggtc taaacgtggc gaaattaaag
     2881 ccgttgccgt ggtgactaaa cgtatccgtt cattggtctc tgacggcaaa ccaatccaca
     2941 ctatcggtgt gccgatccac tggggctttg cggctacaac cggtgcgaaa aaaggctatt
     3001 ttgccaataa cttaaccgtg cgaacaggtg aaccaaactc aaatacacct gaatcgaaat
     3061 gtatgttatt aaacattgag aaaattgtgg gggcttaaca atgagtacag ttcaaactca
     3121 aaacattatt aaaatctccg caacctcggc gctgacaccg gcgccgcagg ctcgttcgca
     3181 ccaagtggaa gtagcgaaac tgatcgatgt caccacttgt atcggctgta aagcctgtca
     3241 agtgggctgt tcagaatgga atgacattcg ctccgatgta aatgcaaact gtgtcggcgt
     3301 gtacgacaac cctgcggatc taaatgcgaa agcgtggaca gtaatgcgct ttaacgaagt
     3361 agaagaaaac gaccgtttag aatggttgat ccgtaaagac ggctgtatgc actgtgccga
     3421 gccgggttgc ttgaaatctt gcccgtcacc gggtgcgatt atccaatacg ccaacggtat
     3481 tgttgatttc caatccgaca aatgtatcgg ttgtggctac tgtatcgcag gttgtccgtt
     3541 caacattcct cgtatgaatc cggacgataa ccgtgtttac aaatgcaccc tgtgtgtgga
     3601 tcgtgtcaat gttggtcaag aaccggcttg cgtgaaaacc tgcccgaccg gtgcaatccg
     3661 cttcggtagc aaagaagaga tgaagttcta tgcagaacaa cgcattgctg atctgaaatc
     3721 tcgtggctat gaaaatgccg gcttgtacga ccctgaaggc gttggcggta cgcacgtaat
     3781 gtatgtatta catcatgccg acaaaccgga gctttattca ggcttaccga aagatccgaa
     3841 gattgatacc acagtaacct tatggaaaga cgttttaaaa cctgtggcgg cagtagcgtt
     3901 gggtggttta gctttagcag aagttgcaca ctatattacc gttgggccaa acgttgagga
     3961 agatcttgaa gaacaccacc atagcgaaaa tgcagaagga ggcaaacatg agtaagaaat
     4021 ttgaaatcac gaacgatacc aaaatcgttc gtcataagcc cttagctcgt gttagccact
     4081 ggttcttagt aatctctttt tttatgacga tgtttaccgg tgttgccttc ttcttccctg
     4141 actttgcttg gcttaccgag attttaggta ctccacagat tgcccgtgca gtccacccat
     4201 ttaccgggat tataatgttt attgcattta ttattatggc gttaatatat tggcaccata
     4261 atatccctga gaaaaatgat attcgttggg caaaaggcat tgttgaagta ctaaaaggta
     4321 atgagcataa ggtttccgat aatggaaaat acaatttggg tcaaaaatta ctcttttgga
     4381 ctcttattct tgcgatgttc actcttttag ccacagggat tattatgtgg agacaatttt
     4441 tctctcacta cttctcgatt cctatgctaa gaattgcaat tttacttcat tcagcaagtg
     4501 catttatgct atttaccgga attttagtac atatgtatat ggcattctgg gtaaaaggct
     4561 caatcagagg tatggttgag ggttgggtta ccgttcgctg ggcaaaaaaa caccacccaa
     4621 gatggtaccg tgaagaagtg ctacctgaat tagaaagaca agtagctgag caaaataata
     4681 aataacctca agtgcggtat tattaccgca cttttatttt attggtttaa aaagaatatt
     4741 atgagtatca aaatactacc tcaagatgat atcaaacaag cagctagttc atttcagcaa
     4801 cccgagctct tatttgctaa tcccaaaaat ctgtatttac gccgcgctaa gcggctacgt
     4861 gaattagcca agcaaaaccc attcggtgaa tatatggagt tttctgctaa cctcgtggac
     4921 attcaattag cattacttga aagccagcca attgcagatt attctcaaaa aataaccgct
     4981 tgtgtagagc gcacgcaagg agaaacaccg ctaaatgcac agaattttca gcgtactgat
     5041 gaatggcgga cactactctt agccattatt gagaaattca agccttatgc aaatgatact
     5101 gttcttgcaa caattgaagt attggaaaag gcagctaagt cagagctaga cacacttgct
     5161 gataatttgc taaatgaacg atacgaactt gtgggcgcag ataaagctgt ctttatttgg
     5221 gctgctctct cactttactg ggtacaatta gctcaacaat taccacgtaa ttctcgtgca
     5281 gaaataggcc ataaacattt atgtccggta tgtaactcag cacctgtaag cagtgtgatt
     5341 catttcggtg aagctcaagg gttacgttat ctacactgtt ctttatgtga aagtgaatgg
     5401 catgtagtac gtacaaagtg tacaaactgt gatgaaaccg gcaaactgga ttattggagc
     5461 ttagatacag tagaagcagc agttaaagct gaaagttgtg gcgactgcca ttcctactta
     5521 aaagtactct atcaagataa agacgtgaat gtggaacctg ttgctgatga tttagcaact
     5581 ctattcttag attccgagat ggaacaaaaa ggtctttcaa gaagtgggat aaatccattt
     5641 ttatttcaag tagagtaact catttacaac aaaaacggag cataacgctc cgttttttat
     5701 tacatttaac tcatacacta tactttttta atcagctatt tttttaactt cacagcggtt
     5761 agcaataatc tcccgatctg acataaatgc gtatcggcat tgagatttaa aatattgaat
     5821 cacagaatca tcaagaggtc gttgtgctcc aacacgtaat tcctccatag aaaaattact
     5881 aacctcttca tctttctctt tatttttcaa taccttacgt tcagatattc taaacttagg
     5941 cttgtcttgc tgttttttta ctccgtttaa tttttcttta ttactaggaa taggattact
     6001 tgcataacta atactattca tcgtaagaaa aagagaaata acaaaaaagc taaaagcgtt
     6061 tttcatagca aacccataaa taaaatgtag cataatcata aaattacgta acattttatt
     6121 acatttagcg catggttaca aattcttcag atcctgtcgg gtgaatagcc actgtgttgt
     6181 caaaatcagc tttcgttgcg cccattttaa ttgcaacagc aaaaccttga atcatttcat
     6241 caacaccaaa accaatacca tgtaacccaa ccactttttc cccttcccca acacaaacta
     6301 atttcattcg gcaaggttga cgatgttgtg taaccgcagt atacattgca gtaaatgaag
     6361 atttatacac tttcacattt tctgccccat attgctcaat cgcttttggc tcacttaaac
     6421 caacagtacc tattggtggg tggctaaaaa cgactgtcgg tactaagcta taatccaaat
     6481 gttcatttgg tttattattg aacaaccgtt ccgatagcct gcgaccagct gcaactgcaa
     6541 caggagttaa ttcaatacca ccttcaataa tatcaccaac agcatagata tttggcacat
     6601 tagtattttg gaatttatcc actttgataa aaccacgctc gttggtttca acaccagcag
     6661 cctctaaatt aatcttatct gtcgctggct cacgaccaat agcccacacc aagctttcaa
     6721 cagaggtttc acgaccatct tgcaatttta atgtcaatga accatctgca tttttaacta
     6781 cttcttgagg agtcgcttgt gtatgtaatt cgatcccatc ttgagctaat acttcaagca
     6841 atgtatccac tattaatggg tcttgattac gcattggagc atgttgacga acaaaaagat
     6901 gggtatttac tcctaaacta ttaaatactc cagctaattc aactgcaata taccctgccc
     6961 ccacaattgc tacggacttc ggtaaagcat ctagtgcaaa tacaccatca gaagtgatac
     7021 cgtattcagc ccctttcaca ttgggtacag ttggacgacc acctgttgca atcagaatat
     7081 ggtctgctgt gacctcctca acggaaccat cagcataact cacttctaat gttttagcat
     7141 ctttaaagcg agcaaaacca tttaaaacat caacattatt ttttgccagc acattaccat
     7201 atgaggtatg aatgcgccca atataggcct ggcgactctc aactaatttg gcataatcaa
     7261 aattatttac cgtaatgtca aaaccataat caggggcgta atggttaatc gcttctgcaa
     7321 cttgtgcacc atagaacatc acttttttgg gtacacatcc cacgttcaca caagtgccac
     7381 ctaaatgttt tgcttcaata atggcacatt tttgcccata gcttgctgct cgattaattg
     7441 aagcaatacc accactacca ccgccgatag caatataatc ataatgttta gccataagct
     7501 attcctcgat ctataaaaac aaaagcaact tattcgttaa gcgctttatc aaattaaatt
     7561 tgcatagaag actaatgttt catatgccct gaattcaaca ttttatcaat atacgccatc
     7621 gctaatgctg aaacaataaa ggctaagtga ataactactt gccacatcat ttgcttttca
     7681 tcaagatttg aagcattgat aaatgtttgt aataaatgaa tagaagaaat actgataatt
     7741 gccattgaaa gttttacttt caaaatagtc gcattaacgt gatccaacca ttctggctga
     7801 tcagggtgat catctacttt taatctagag acaaaagttt catatcctcc aacaataacc
     7861 ataaccaaaa gatttgcaat catcaccaca tctattaaat ttaataccgc taacataaca
     7921 gtattt
//
LOCUS       DANLZD010000118         7878 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.118, whole genome shotgun sequence.
ACCESSION   DANLZD010000118 DANLZD010000000
VERSION     DANLZD010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7878)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7878)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7878
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.118"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            19..153
                     /locus_tag="PXE26_001985"
     CDS             19..153
                     /locus_tag="PXE26_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/trimethylamine N-oxide reductase
                     NapE/TorE"
                     /protein_id="HDL5594544.1"
                     /translation="MRSELLKTLLLSGLILPLLMAFAVGAYGFIVWMLQLFVIGLPGA
                     "
     gene            157..1320
                     /gene="torC"
                     /locus_tag="PXE26_001986"
     CDS             157..1320
                     /gene="torC"
                     /locus_tag="PXE26_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentaheme c-type cytochrome TorC"
                     /protein_id="HDL5594545.1"
                     /translation="MLGSIKALFTRPATKIGLGVLVGIGFIAGAISWHQFNKAMDHTS
                     TEEFCVSCHSMQQPLEELKKTAHWSNKSGVTATCSSCHLPHDYTEKYARKVQASREAW
                     AELSGKYKEEGSFEKHRLEMAEREWARFAANGSKECKACHSYERMNFDKMGEAARKAM
                     KPAAEKDQSCMDCHKGIAHHLPKADENALKSKFDQFVNKSPNQGKSYYTKGNAELFLD
                     EGLSQAIGQLETAVPVAFVQAGKNADLVELTMWRKEKGFGRIWYHDFGKNITDAVLTK
                     EFMANQPKFEVLETKEDPITGLNWQKVKLQAWIGKAQLLDDVTPIWANAENQYKTQCS
                     TCHRQPDVAHFDSNSWIGLFNGMVGFTNMDKQTGKEVLRYLQMHASDSEEAKH"
     gene            1420..3885
                     /gene="torA"
                     /locus_tag="PXE26_001987"
     CDS             1420..3885
                     /gene="torA"
                     /locus_tag="PXE26_001987"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
                     /protein_id="HDL5594546.1"
                     /translation="MQQSRRQFLKNMSVMAAAVTMPNFLVPRNVFASEDLSQWKVSGS
                     HWGAMRAKIENGRVAEIKPFEFDKHPTEMLNGIKGLIYSDSRIRYPMVRLDWLKNRHN
                     SNTAQRGDNRFVRVTWDEALDLFYQELERVQKEYGPWALHTANVGWRSTGQFHSCGNH
                     MIRAIAMHGNSVGTAGDYSTGAGQTILPYVLGSTEVYSQGTSWEIILKESENIIFWAS
                     DPVKNLQVGWNCETHEAYAYLEKLKEKVAAKGVNVICVDPVKSKTQNFLGCEQQYINP
                     QTDVPFMLALAHTLYTENLYDKKFLDMYTVGFEKFLPYLLGETEDKVAKTPEWAAEIC
                     GISADKIREFARMLAGKRTQFIFGWAIQRQQHGEQPYWMGAVLASMLGQIGLEGGGIS
                     YAHHYSSIGIPESGAAMPGAFPLNIDEGQTPKYDNKDYKGYSDTIPVARMTDSLLHAG
                     ETIDYNGKKVTYAPFKMAIFTGCNQWHRHSERNKMKQAFQKLETIVSINYSWTATCRF
                     SDIVLPACTPFERNDIDAYGSYSNRGVIAMHKLVDPLYDSRSDFEIFRDLCRRFGKEK
                     EYSRGMDEMQWVEKLYKDCRRENRGKFEMPEFAEFWQKGYVLFPEGKPWVRHADFRED
                     PELHALGTPSGFIEIYSNKIASFGYDDCKGHPMWFEKAERSHGGKNSDKFPYWLQSVH
                     PDKRLHSQLCESKELRETYSVQGREPLYINPQDAAKHGIQDGDLVRVFNDRGQAIVGA
                     VLSDNFPTGVVRLQEGAWYSPLDESVGAIDTYGDPNTMTLDIGTSKLAQAVSANTCLV
                     NIEKFIGNAPAPNGFNGAIEVTA"
     gene            3885..4475
                     /gene="torD"
                     /locus_tag="PXE26_001988"
     CDS             3885..4475
                     /gene="torD"
                     /locus_tag="PXE26_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD"
                     /protein_id="HDL5594547.1"
                     /translation="MTLAISREERQFIYGWFNAMLARELSDEQLNALQAGEFDDFFAY
                     LSELGFAEQVAKFQAEVTACRQLEFPRLELAADFAQLFLLEGNLSAIPYASAYLSGEA
                     LAKNLAEMDRLLGEFGLQVNRETKEPSDHLCVYLTLFDRLLAEKPLETQQQFLQNQLM
                     SWLPAWFAKAKTVKTNTGVYPALLRLFEQVLLKEQR"
     gene            4615..5304
                     /locus_tag="PXE26_001989"
     CDS             4615..5304
                     /locus_tag="PXE26_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HDL5594548.1"
                     /translation="MQNNKTTYLNWYDLCVLTLILFGEAIYTSTQQYFITTEMQGNFE
                     ENLTFSNEQNYWALLTQLALLLIAMGYLKWRNFDFSRWVIRPSWLAFFSGIGLFILLS
                     LAMDLYFETLYGVYNLVYPEPFWAVLREVNISTVLYAILNGFYEEIFFLGICLAVKPE
                     YLKWAVIYSLIIRVSFHTYQGMESALGLGIWLGLIIYLLYSRSKQKNLFPFWVAHSIA
                     DILGLSLLAYF"
     gene            5462..6268
                     /locus_tag="PXE26_001990"
     CDS             5462..6268
                     /locus_tag="PXE26_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL5594549.1"
                     /translation="MKSIKKLTLATLILVGLTACGSGGSGSSSNNAKSKPQVELKKTE
                     EDKKTEEDKKTEEDKKTEEDKKAEEAKKIAEAKGIGNKEYKDGLNELEEKNETGKNGE
                     EIRTHGYLYNSHYSVVTAKMKQTLQENGRQMEPTVEVKGLKTENLPTEGKATYKGEAF
                     DSHGNNSNSVVGGELIYNVDFSSRTGSGLVKNVQGGSIELAQGEIKNDSIIASAHQKY
                     NDQAVGNGSYNIQFFGPNAEEIGGKIELNGEGEGSMKQMLGIAGTREEQK"
     gene            6317..7711
                     /locus_tag="PXE26_001991"
     CDS             6317..7711
                     /locus_tag="PXE26_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5594550.1"
                     /translation="MYKKHFLFLLVSPLVMAETVEFQQDPKEFDGQRQAVKFEQEIAK
                     KDLKLTAYLEEDNSLKGIEQHINQAILRQDWAKLERLLGDYAKQEQFDPLLLDYALAA
                     LAYAKKDYRSAAFYYQQLLKKQPDLTYPRFDLALILKEDYRYREAEQEFKQLKTDDLR
                     NAVNSALAQIEEEESWKPDFYLQYTQTNNVNNASSSPTVNVNGRIFIKESDSLPQSAK
                     GVRYGVGLSKMRNIGGNHFVGVDLGYNGVYYWNNHDYSEQSVSLTPKYSYRTATYRIG
                     VSPFIEQNWLGSSRYNYQFGSSINAVKLFERGLISGSFSHLQKRYSEQHIADRYNGYR
                     NQLTLGTQWQAVKNWRFFANLNASREITREKAQSSNKWLATIGVIYQTPSWASSVSVG
                     YGKRYFADKHYLFGYKRQDKEYQANVAVWNRSWHWQGIVPKLNFRYQKIDSNIADFYS
                     RSNKEVFMTLEKLF"
BASE COUNT         2398 a         1587 c         1863 g         2030 t
ORIGIN      
        1 aataaaaaag gagttgaaat gcgttcagaa ctattaaaaa cgcttttgct atcagggctg
       61 attttaccgc tattgatggc gtttgccgta ggagcttacg gctttattgt gtggatgtta
      121 caactgtttg ttattggttt accgggagcg tagaaaatgt taggttcaat caaagcatta
      181 tttactcggc ctgcaaccaa aatcgggttg ggagtgttag ttggtatcgg ttttattgcc
      241 ggagcaatta gctggcatca atttaataaa gcgatggatc ataccagcac tgaagagttt
      301 tgcgtgagtt gccactcaat gcagcagccg ttagaggagc ttaaaaaaac cgcccactgg
      361 tcgaataaaa gcggggtaac ggcaacctgt tcaagctgcc acttaccgca cgattatacc
      421 gaaaaatatg cccgcaaagt gcaggcaagc cgtgaggcgt gggcagaatt atccggcaaa
      481 tataaagaag aaggctcatt tgaaaaacac cgcttagaaa tggcagagcg tgagtgggca
      541 agatttgccg ccaatggttc aaaagagtgt aaggcttgcc acagctatga gcgaatgaat
      601 tttgataaaa tgggcgaagc agctcgtaag gcaatgaaac cggctgcgga gaaagatcaa
      661 agttgtatgg attgccacaa aggcattgct caccacttac cgaaagccga tgaaaatgca
      721 ctgaaatcga agtttgatca gtttgtgaat aaatccccaa accaaggcaa atcttactac
      781 accaaaggga atgccgaatt atttctagac gaaggtttaa gccaagctat cgggcaatta
      841 gaaaccgccg tgccggtggc atttgtgcaa gcgggcaaaa atgcggattt ggttgagctg
      901 acaatgtggc gtaaagagaa aggtttcggt cgcatttggt atcacgattt cgggaaaaac
      961 attaccgatg cggttctaac caaagagttt atggcaaatc agccgaaatt tgaggtgttg
     1021 gaaaccaaag aagatccgat taccggcttg aattggcaaa aagtgaaact acaagcgtgg
     1081 attggcaaag ctcaattatt agacgatgtt accccaatct gggcgaatgc agaaaaccaa
     1141 tacaaaaccc aatgtagcac ttgccacaga cagcctgatg tcgcccactt cgattccaac
     1201 agctggatcg gcttattcaa cggaatggtc ggctttacca atatggataa acagaccggc
     1261 aaagaggtgc tacgttattt acaaatgcac gcctccgata gtgaagaagc gaagcattaa
     1321 taatattact cccctcttta ctaaagaggg gaattaatcg agcgttgaat aacattctct
     1381 gtactagctc acgtttttac aaataaagaa ggacaagata tgcaacaatc tcgccgtcaa
     1441 tttttaaaaa atatgtctgt gatggctgcc gctgtcacaa tgccgaattt cctcgtgcct
     1501 cgcaatgtgt ttgcgagtga agacctcagt caatggaaag tttccggctc tcactggggg
     1561 gcaatgcgtg ccaaaattga gaacggacga gtggcagaaa tcaaaccgtt cgagtttgat
     1621 aaacacccga ccgaaatgct caacggcatt aaaggcttaa tttacagcga ttcccgtatc
     1681 cgctacccga tggtgcgttt agattggctc aaaaaccgcc ataacagcaa caccgcacag
     1741 cgtggcgata accgctttgt gcgggtaacg tgggacgaag ccctcgacct gttctaccaa
     1801 gagttagaac gggtacaaaa agagtacggc ccgtgggcgt tacacaccgc caatgtgggc
     1861 tggcgttcaa ccggtcaatt ccacagttgc ggtaaccata tgatccgagc gattgcgatg
     1921 cacggtaaca gtgtcggcac ggcaggcgac tattctaccg gtgcagggca gaccattctg
     1981 ccgtatgtgc tgggttcaac cgaagtctat tcgcagggca cgtcttggga aatcatctta
     2041 aaagagagcg aaaacatcat tttctgggca agcgacccgg tgaagaacct gcaagtgggt
     2101 tggaactgcg aaacccacga agcctatgcc tacttggaaa aactgaaaga gaaagtggca
     2161 gcaaaaggcg tgaatgtgat ctgtgttgat ccggtgaaaa gcaaaaccca gaatttctta
     2221 ggttgcgaac agcagtacat caatccacaa accgatgtgc cgtttatgtt ggcacttgcc
     2281 cacacgctct acaccgagaa cctgtacgac aaaaaattct tggatatgta cacggtcggc
     2341 tttgaaaaat tcctgccgta tctgttaggc gaaaccgaag acaaagtggc gaaaaccccg
     2401 gaatgggcgg ctgaaatttg tggtatttcc gccgacaaaa tccgtgaatt tgcccgaatg
     2461 cttgccggca aacgcaccca atttattttc ggctgggcaa ttcaacgcca acaacacggc
     2521 gaacaaccgt actggatggg agcggtgcta gcctcaatgt tagggcaaat cggcttggaa
     2581 ggcggcggca tcagctatgc tcaccattac agctctatcg gtattcctga atccggtgcg
     2641 gcaatgccgg gggcgttccc gctcaatatt gatgaggggc aaaccccgaa atacgacaac
     2701 aaagattaca aaggctacag cgacaccatt ccggtggctc gtatgaccga cagcttgctc
     2761 cacgccggcg aaaccattga ttacaacggc aaaaaagtga cttacgctcc gttcaaaatg
     2821 gcgattttca ccggctgtaa ccaatggcac cgccattccg agcggaacaa aatgaaacag
     2881 gcgttccaaa aactggaaac cattgtttcg atcaactaca gttggacggc aacctgccgc
     2941 ttctccgaca tcgtgctgcc ggcctgtacc ccatttgaac gcaacgatat tgacgcctac
     3001 ggctcataca gcaaccgtgg cgtgattgca atgcacaagc tggttgatcc actctacgac
     3061 tctcgctccg actttgagat tttccgagat ctctgccgcc gtttcggtaa agagaaagag
     3121 tacagccgtg gaatggacga aatgcagtgg gtagaaaaac tctacaaaga ttgtcgccgt
     3181 gaaaacagag gtaaatttga aatgccggag tttgctgaat tttggcaaaa aggctatgtg
     3241 ctgttcccag agggcaaacc ttgggttcgc cacgccgatt tccgtgaaga tccggaattg
     3301 cacgcacttg gcacaccgtc cggctttatc gaaatttaca gcaacaaaat cgcctctttc
     3361 ggctatgacg attgcaaagg tcacccaatg tggtttgaga aagccgaacg ttcacacggc
     3421 ggtaaaaatt ccgacaaatt cccgtactgg ttgcaatcag ttcacccgga caaacgctta
     3481 cactctcaac tttgtgaatc gaaagaactg cgtgaaactt acagcgtgca agggcgtgaa
     3541 ccgctttaca ttaacccaca agatgccgcc aaacacggca ttcaagacgg agatttagtg
     3601 cgagtgttta acgaccgtgg gcaagcgatt gtgggggcgg tgctttccga caacttcccg
     3661 accggcgtag tgcgtttaca agaaggggct tggtattcac cccttgacga aagcgtgggg
     3721 gcgattgaca cctatggcga cccgaacaca atgaccctcg acatcggcac gtccaagttg
     3781 gcacaagcgg tttccgccaa cacttgcttg gtgaacatcg agaaatttat cggcaatgcc
     3841 ccggctccga atggctttaa cggtgcgatt gaggtaacgg cttaatgacg ttggcaatca
     3901 gtcgtgaaga acggcaattt atctatggct ggtttaacgc aatgctcgcc cgagaacttt
     3961 cggacgagca gttaaatgcc ttacaagcgg gcgaatttga cgattttttt gcatacctca
     4021 gcgaattggg ttttgccgaa caggttgcaa aatttcaagc agaagtgacc gcttgtaggc
     4081 agctggaatt tcctcgtcta gaactggcgg ctgactttgc ccaactgttt ttattggaag
     4141 gcaatctcag tgccattcct tacgcctccg cctatttaag cggcgaagcg ttagcgaaaa
     4201 atttggcgga aatggacaga ctgctgggcg aatttgggct gcaagttaat cgagaaacca
     4261 aagagccgag cgatcacctt tgcgtttatc tcaccctttt tgaccgcttg cttgctgaaa
     4321 aaccgttgga aacgcaacag caatttctgc aaaaccaact gatgagctgg ctccctgcgt
     4381 ggttcgccaa agccaaaacc gtcaaaacta acaccggcgt ttatccggcg ttgctaaggt
     4441 tgtttgaaca ggtgttgctg aaggaacaaa gataaagtta tttatttgag aatgatttgt
     4501 attgagcgaa ttgagaaagg aagttaaaat ttcaacttcc ttttttattg gctggattta
     4561 tccacattat tacaagcggt tatttttata aaaaaattta caaaggagac attaatgcaa
     4621 aataataaaa ccacctacct aaattggtac gatttatgcg tgctaaccct gatcctgttt
     4681 ggtgaggcaa tttatacctc aacccagcaa tatttcatca ccaccgaaat gcaaggtaat
     4741 tttgaagaaa atttaacctt ttcaaatgaa caaaattatt gggcattact gacgcaactt
     4801 gcattgttgc tgattgcaat gggctatcta aaatggcgga attttgattt cagccgttgg
     4861 gtgattcgtc cctcttggct ggcttttttt agcggtatcg ggttgtttat cttgctctcg
     4921 ttagcgatgg atctctattt tgaaacatta tatggtgttt acaacctagt gtatccggag
     4981 ccattttggg cagtattgag agaagtgaat atttctaccg tgctgtatgc gattttaaac
     5041 ggcttttatg aagaaatctt tttcctcggt atttgcttgg cggttaaacc tgaatattta
     5101 aaatgggcgg tgatttattc actgattatt cgggtgagtt ttcataccta tcaaggaatg
     5161 gaaagtgcgt taggattagg aatttggctc ggtttaatta tttatttgct ctactcacgc
     5221 tcaaagcaga aaaacctatt tccattttgg gtggcacaca gtattgcgga tattttgggg
     5281 ctgagtttgt tggcttattt ttagttaaag gtgctacatt taagcggcat aagttgatag
     5341 agctgatcgt accagtagca taaaaacatt attatttgta tggaaaggtg cttttaggtt
     5401 acaatataac cgatagttat tggttataac taaaaattat ttttaattta acggagcaaa
     5461 tatgaagagt atcaaaaaat taaccctagc cactttgatt ttagtgggtt taactgcttg
     5521 tggtagcggt ggttcaggta gcagttctaa taatgctaaa tcgaaaccac aagttgagtt
     5581 aaaaaaaact gaagaggata aaaaaactga agaggataaa aaaactgaag aggataaaaa
     5641 aactgaagag gataaaaagg ctgaagaagc aaaaaaaatt gcagaggcaa aaggaattgg
     5701 caataaagaa tataaagatg gattaaatga gttagaagaa aaaaatgaaa caggtaaaaa
     5761 cggagaagag attcgaaccc atggttatct ctataacagc cattattccg ttgtaactgc
     5821 caaaatgaaa caaactttac aggaaaatgg tcgtcaaatg gaacctacgg ttgaagtgaa
     5881 agggcttaaa actgagaatt taccgacaga gggcaaagca acatataaag gagaagcctt
     5941 tgattctcac ggtaataaca gcaattcagt agtaggtgga gaattaatct ataatgttga
     6001 tttctctagt cgtaccggat caggtctagt taaaaatgta cagggcggtt ctatcgagtt
     6061 agcacaaggc gaaataaaaa atgatagtat tatagcttct gctcaccaaa agtataatga
     6121 tcaggctgtt ggaaatggta gttacaatat ccaattcttt ggtccaaatg cagaagaaat
     6181 tggagggaaa attgagctta atggtgaggg cgaaggctca atgaagcaga tgttaggtat
     6241 tgcaggaacc cgagaagaac aaaaataaca tttaataccc aatgccgttt aatcttaaac
     6301 ggcattcttt tttactatgt ataaaaaaca ttttctattt ttacttgttt cgcctttagt
     6361 aatggcggaa acggttgagt ttcagcaaga tcccaaagag tttgatgggc agcgacaagc
     6421 ggttaaattt gagcaagaaa ttgcaaaaaa ggatttaaaa ttaaccgctt acttggagga
     6481 agataattct cttaaaggta ttgaacagca cattaaccaa gcgattctta gacaagattg
     6541 ggcgaagctg gaaaggctgc ttggcgatta tgcaaagcaa gagcaatttg atccgctact
     6601 tttagactat gctttggcgg cattggctta tgctaaaaaa gattatcgct ctgcggcgtt
     6661 ttattatcag cagttgctga aaaaacagcc tgatttaacc taccctcgtt ttgatttggc
     6721 tctgatttta aaagaggatt atcgctacag ggaagcagag caagaattta agcaactcaa
     6781 aaccgatgat ttacgcaatg cggtgaacag tgcgttggct caaatagagg aggaagagag
     6841 ctggaagccg gatttttatt tgcaatatac tcaaaccaac aatgtgaata atgcttcttc
     6901 gtcgccaacg gtaaatgtaa acgggcggat ttttattaaa gaatcagaca gcttgccgca
     6961 gtcggcaaaa ggcgtaagat atggcgttgg cttgagtaaa atgcgaaata tcggcggtaa
     7021 tcattttgtg ggagtcgatc ttggctataa cggcgtttat tactggaata accacgatta
     7081 tagcgaacag tcggtctcac taacaccaaa atatagctac agaacggcaa cttatcgtat
     7141 cggggtttcg ccctttattg agcagaattg gctgggtagc tcacggtata actatcaatt
     7201 tggtagcagt atcaatgctg ttaaactttt tgaacgaggg ctgatttccg gctcattcag
     7261 ccatctgcaa aaacgttata gtgaacagca tattgccgac cgttacaatg gttatcgcaa
     7321 ccaactcacg ctaggtacgc aatggcaagc ggtcaaaaat tggcgatttt ttgcaaatct
     7381 taacgctagc cgtgaaatta cccgtgagaa agctcaatct tccaataagt ggctggcgac
     7441 cattggcgta atttaccaaa ccccaagctg ggcaagttcg gtaagtgtcg gatatggcaa
     7501 gcgttatttt gctgataaac attatctgtt tggctataaa cgccaagata aggaatatca
     7561 agcgaatgtg gcggtgtgga atcgaagttg gcactggcaa gggattgtgc cgaaattgaa
     7621 tttccgttat caaaaaatcg atagcaatat tgccgatttc tactctcgta gcaataaaga
     7681 agtctttatg accttagaga aactatttta aggctgtgta tgaatgtcgg ggagaaaaat
     7741 tttctccccg atatttatgt gtagaagatc agacttgatc tgacaattca ctctaaaaag
     7801 tgagagtttc ccgtttagaa tatgagtgtc aaaaatcaat ctaaacaaaa aggaaactct
     7861 catgttttat tctaacaa
//
LOCUS       DANLZD010000119         7829 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.119, whole genome shotgun sequence.
ACCESSION   DANLZD010000119 DANLZD010000000
VERSION     DANLZD010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7829)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7829)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7829
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.119"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            114..2681
                     /gene="clpB"
                     /locus_tag="PXE26_001992"
     CDS             114..2681
                     /gene="clpB"
                     /locus_tag="PXE26_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HDL5594551.1"
                     /translation="MNFEKMTTKLQEALAESQSLAVGKDNPYIEPAHLLYALLKQEGG
                     SIASLFTTLNVDVPTLIRELQQILDRLPKVQGGNTQVSQQLVRLLNQSDKLAQQFGDS
                     FISSELFVLAALDDNGDLGKLFKQFGLNKEKLTQAISQIRGGDTVNNQNAEDTRQALK
                     KYTIDLTERAKAGKLDPVIGRDEEIRRAVQVLQRRTKNNPVLIGEPGVGKTAIVEGLA
                     QRIVNGEVPEGLKNKRVLSLDMGALIAGAKYRGEFEERLKAVLNDLAKEEGQVILFID
                     EIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYRQYIEKDAALERRFQKV
                     LVDEPTVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYVSDRQLPDKAIDLI
                     DEAASSLRMEIDSKPEPLDKLERRIIQLKLERQALQKEEDEASRQRLAKLDEEMAAKE
                     REYSELEEIWKAEKSALLGTQHIKSELENARIAMDQARRENDFEKMSELQYGVIPNLE
                     KQLQAVENGEKNADAQLLRTKVTEEEIAEVLSKATGIPVAKMMEGEKEKLLRMEEVLH
                     ARVIGQNEAVDAVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELSKTLANFLFDD
                     PDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRHPYSVVLLDEVEKAH
                     PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSHLIRENAYKGYDVVKEMVM
                     EVVGQHFRPEFINRIDETVMFHSLGQEHIRSIAKIQLQRLIQRLAERGYEVTVTDAAL
                     DHIGKAGFDPLFGARPLKRAIQQELENPLAQQILSGKLLPNKAVTVDYQNGQIVATQ"
     gene            2895..4037
                     /locus_tag="PXE26_001993"
     CDS             2895..4037
                     /locus_tag="PXE26_001993"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HDL5594552.1"
                     /translation="MSQLFPEATIRTQAPYRNDIVGSFLRTDALKKAREDFNQQKITR
                     DELREVTRQEVKKLVELQKQHGVKAVSDGEFSRTWWHLDFLAELDGMDWQETEVFNVN
                     FTGHKPKGQTVKIVGDIDFSESHPFVDAYRLLKEAAGDYPTKFTIPAPTMLHIICCVR
                     AEDYQPLPQYQDEQKLYDDIANAYIKAMHKFYDMGLRNLQLDDTSWGQFCAEDKRKEF
                     AARGFNLTDLAEKYVALLNRIVDAKPADMSITMHICRGNFRSSWFSEGGYGPVAEVLF
                     GKCRVDGFFLEYDTERAGTFEPLRHIKDQQVVLGLITSKFGDLEDKNVIIERIKEAAQ
                     IVPINQLCLSPQCGFASTEEGNILTEAAQWAKLNLIKEIAEEVWGS"
     gene            complement(4094..5485)
                     /locus_tag="PXE26_001994"
     CDS             complement(4094..5485)
                     /locus_tag="PXE26_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HDL5594553.1"
                     /translation="MENTPLIEPSKNTRNSLIFVADAILFIILLNTLPFTPEANKGLA
                     LLIFIAVLWLTEALHVTVTALLIPILAVALGLVKSKEALVAFADPTIFLFFGGFALAT
                     ALHIQQLDRMIANKIMALAKGKLSIAVIYLFAVTAFLSMWMSNTATAAMMLPLAMGIL
                     SKLDQKQNHNTYLFVLLGIAYSASIGGMGTLVGSPPNAIVASQLNLTFADWLKYGLPI
                     MLILFPLMIATLYIVFKPNFSVSFDRSFEKIELNRSRIITLAIFVFIALGWIFGDKIN
                     PIISAFLGINGKIASFDTILALIAAALICITRVANWQQIQENTEWGVLFLFGGGLTLS
                     AVLGQTGASKIMADGVVSLIEGGHFYLIGLIVAAFIIFLTEVTSNTASAALLVPIFIS
                     IAQALNMPPVGLALIIGLGASCAFMLPVATPPNAIVFGTGQIKQSEMIKVGFWLNIIS
                     IFVIATVGYLFWL"
     gene            complement(5645..6544)
                     /gene="cdd"
                     /locus_tag="PXE26_001995"
     CDS             complement(5645..6544)
                     /gene="cdd"
                     /locus_tag="PXE26_001995"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HDL5594554.1"
                     /translation="MFRTDITERFEQLKAAKNCEVTQAIIEQLIKQDFHGQLSYEVVD
                     ELCEKFKRSRVELALYCIAIAACYAVTPVSDFNVGAVAIGKNGDFYFGANQEFSGECM
                     QQSVHAEQSAISHAFLAGETLITDVVVNYTPCGHCRQFMNELNSAASLKVHLPHSQNN
                     LLHSYLPDSFGPKDLGIEKVLFDEQPQQFEVKGDHLQQAAIFAANNAYAPYSNAFSGV
                     ALQVGERIVCGKYTENAAFNPTFLPLQSALNYRLFLGLADIPVTRVVLAEAKGSLSSY
                     AMTQALAKSLFGLEIEYLSLQAV"
     gene            complement(6558..7460)
                     /locus_tag="PXE26_001996"
     CDS             complement(6558..7460)
                     /locus_tag="PXE26_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5594555.1"
                     /translation="MISSSLKLGYFSLIVATLFWGGNFVLGKVLSGAVQPITLTYLRW
                     LPAFLILVLLFFRPTWRVMHLLKPRLGVMWVLGLLGVILFPATLYEGLKTTTALNASL
                     YLAISPVLVLFLNRLVFKEKISPIILSGAIISLLGVLWLLMQGKLTRLFSLAINQGDL
                     WAIASTISWAVYCCVIRLRPQGISNTVFLTVLVGLAVLTLTPFFIYEYVAESAKNLAN
                     LTALQWSGIGYLVIGPSILSYAFWNFGIAIVGSAKGAVMTNFTPLFAAMFSIILLNES
                     VHTYHIISAILITAGILICSYKKH"
     gene            complement(7457..7813)
                     /gene="folB"
                     /locus_tag="PXE26_001997"
     CDS             complement(7457..7813)
                     /gene="folB"
                     /locus_tag="PXE26_001997"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HDL5594556.1"
                     /translation="MSDKVFIRELTAFASIGAYNWEHTIKQRLVFNIDMAWDFSKAAE
                     TDDVQYCLNYAEVSQKVLDFVESQPFKLVETVAYQLAELLQKEYQLSWIRIELHKPKA
                     VAQASSVGVIVERGHQ"
BASE COUNT         2574 a         1642 c         1573 g         2040 t
ORIGIN      
        1 gtgatctttt tcacattttt acttgaaaat tgtttaccaa gctccattta gtgtttcaac
       61 aagagatgta aataaaaatt tacactttct aaactcattg taaggagaaa gaaatgaatt
      121 ttgaaaaaat gaccacaaaa ctgcaagaag ccttggctga atcacagtcg cttgcggtag
      181 gaaaagataa tccgtacatc gaaccggcac atttgctcta tgcgttgtta aaacaagaag
      241 gtggctcgat tgcttctttg tttaccacat taaatgttga tgtaccgact ttaattcgtg
      301 aattacaaca aattttagac cgcttgccga aagttcaagg cggtaacacc caagtttcac
      361 aacagttggt cagactgtta aatcaatcag acaaactggc acaacaattc ggcgacagct
      421 ttatttcatc agaactattt gttctagctg cacttgatga caatggcgat ttggggaaac
      481 tatttaaaca atttggctta aacaaggaaa aactaacaca agccatcagc caaattcgag
      541 gaggagacac agtgaataat caaaatgcgg aagatacccg ccaagcactc aaaaaatata
      601 cgattgattt aaccgaaaga gccaaagccg gtaaattaga cccggttatc gggcgtgatg
      661 aagaaattcg ccgtgcggtg caagtcttac aacgccgtac caaaaacaac cctgtgttaa
      721 ttggtgaacc gggtgtgggg aaaacggcga ttgtagaagg cttggcacag cgtattgtaa
      781 acggcgaagt gccggaaggc ttgaaaaata agcgtgtact ttcgctggat atgggagcat
      841 taattgccgg tgcgaaatat cgtggtgaat ttgaagagcg tttaaaagcg gttttaaacg
      901 acctggcgaa agaagaaggg caagttatcc tctttattga tgaaattcac acgatggttg
      961 gagcaggcaa aacagacgga gcaatggacg ccggcaactt attaaaacca agccttgccc
     1021 gtggtgaatt gcactgtgtg ggggctacaa cccttgatga atatcgccaa tacattgaaa
     1081 aagacgcagc ccttgaacgc cgtttccaaa aagtattggt ggacgaacca acggttgaag
     1141 atacgattgc gattttacgt ggtttgaaag agcgttatga aatccatcat cacgttcaaa
     1201 ttacagaccc tgccatcgtg gcggcggcaa cgctttcgca ccgttatgtg tctgaccgtc
     1261 aattgccgga taaagcgatt gacttgattg atgaagccgc ttcaagcctg cgtatggaga
     1321 ttgattctaa acctgagccg ttggataaat tagaacgccg cattatccaa ctcaaattgg
     1381 aacgccaagc gttacaaaaa gaggaagatg aagcgagccg tcagcgttta gccaaattag
     1441 acgaagaaat ggcagcgaaa gagcgtgaat attccgagct ggaagaaatc tggaaagcgg
     1501 aaaaatccgc cttacttggt acacagcata ttaaatcgga gttggaaaat gcccgaattg
     1561 cgatggatca ggctcgccgt gaaaacgatt tcgagaagat gtcggaattg caatatggcg
     1621 tgattccaaa cttggaaaaa cagttacaag cggtcgaaaa tggcgaaaaa aatgcagatg
     1681 ctcagctcct ccgtactaaa gtcaccgaag aggaaattgc ggaagtgctt tcaaaagcaa
     1741 cgggcattcc tgttgcaaaa atgatggaag gcgagaagga aaaactcctt cgtatggaag
     1801 aagtattaca cgctcgggtt atcgggcaaa atgaagccgt tgatgcggtg gcaaatgcga
     1861 ttcgccgtag ccgtgccgga ctttccgatc cgaataaacc gattggttca ttcctattct
     1921 taggaccgac cggcgtgggt aaaaccgagt taagcaaaac cttagctaat ttcttgtttg
     1981 acgatcctga tgctatggtg cgaattgata tgtctgaatt tatggaaaaa cacagcgtat
     2041 cccgcttagt gggcgcacct ccgggctatg tcggctacga agaaggcggc tatttgaccg
     2101 aagcggttcg ccgccatcca tattcggtag tgttacttga tgaagtggaa aaagctcacc
     2161 ctgatgtgtt taacatttta ttgcaagtgt tagatgacgg gcgtttaacc gacgggcaag
     2221 gcagaacagt cgatttccgc aatacggtag tgattatgac ctcaaactta ggctcgcatt
     2281 taattcgaga aaatgcgtat aaaggctatg atgtggttaa agaaatggtg atggaagtcg
     2341 tcggacagca cttccgccct gaatttatca accgtattga tgaaacggtg atgttccact
     2401 cacttggtca agagcatatc cgttcgattg cgaagattca gctacaacgc ttaatccaac
     2461 gcttggcaga acgaggctat gaggtgacag taaccgatgc agcattagat catatcggca
     2521 aggctggttt cgatccgctg ttcggagcaa gaccactgaa acgtgcgatt caacaagagc
     2581 ttgaaaatcc gcttgctcaa cagatcttaa gcggtaaatt attaccgaat aaagccgtta
     2641 cggtggatta ccaaaacggg cagattgttg caacacaata atgtctccga tggtgcgagc
     2701 gtcctcgctc gtaccttaca agcggtggat ttatcgtaaa aatttgcaaa aaattgctcg
     2761 aaaataaccg cttgcacagt aaaaattttc atattgccct tcattaattt tcataagcta
     2821 atgaagggct ttttattact ctttttgcta tcattaacgg cgtttataac caatacaatt
     2881 acaaggagta atttatgagc caattatttc cggaagcaac aatccgcact caagccccgt
     2941 atcgtaatga tattgtaggc agctttctac gtaccgatgc gttaaaaaaa gccagagaag
     3001 atttcaatca gcaaaaaatc acccgtgacg aattgcgtga agtcacacgc caagaggtca
     3061 aaaaattagt tgagttgcaa aagcaacacg gtgtaaaagc agtctctgac ggtgaattta
     3121 gccggacttg gtggcattta gatttcttag ctgaacttga tggaatggat tggcaagaaa
     3181 ccgaagtctt taacgtgaac tttaccggtc ataaacccaa agggcaaacg gtaaaaatcg
     3241 tgggcgatat tgatttctcc gaaagccacc cttttgtgga cgcttatcgt cttttaaaag
     3301 aagctgccgg cgattaccca accaaattca cgattccggc accgacaatg ttacatatta
     3361 tctgctgtgt gcgtgcggaa gattaccaac cgttaccaca atatcaagac gaacaaaaac
     3421 tgtacgatga tattgctaat gcttatatca aagcaatgca caaattctac gatatggggc
     3481 tacgtaactt acaattagac gacaccagtt ggggacaatt ctgtgccgaa gataaacgga
     3541 aagagtttgc agccagagga tttaatttaa ctgatttagc ggaaaaatat gtcgcattat
     3601 taaaccgtat tgttgatgca aaaccggcgg atatgtcaat tacgatgcac atctgccgtg
     3661 gtaacttccg ttcttcttgg ttctcggaag gcggttatgg accggttgcc gaagtattat
     3721 tcggtaaatg ccgtgttgac ggcttcttct tagaatacga taccgaacgt gcaggcactt
     3781 tcgagccact acgccacatt aaagatcaac aagtggtact aggcttaatt acctctaaat
     3841 ttggcgattt agaagataaa aatgtgatca ttgagcgtat taaagaagcg gctcaaattg
     3901 tgccaatcaa tcagctatgc ttatcaccac aatgcggctt tgcctccacc gaagaaggca
     3961 atattttaac cgaagccgca caatgggcga aactaaactt aattaaagaa attgcggaag
     4021 aagtttgggg tagctaatcc tctataatac aaatagccga gtaaatactc ggctatttta
     4081 gtttgtttta acattacaac cagaagagat acccaacagt cgcaatcaca aagatagaga
     4141 taatatttag ccagaaacca actttaatca tctcactttg tttaatttgc cctgtaccaa
     4201 atacaatcgc attcggtggg gtggcaaccg gcaacataaa ggcgcaagat gctcctagac
     4261 caataattaa ggctaatccg accggtggca tatttaatgc ttgtgctata gagatgaaaa
     4321 tcggcactaa caaagccgca ctggctgtgt tagaggtaac ctcagttagg aaaataataa
     4381 atgctgccac aattaaacca attaggtaaa aatgcccccc ttcaattagt gagacgaccc
     4441 catcagccat aattttgctc gcaccagttt gtcctaatac agcacttaac gtcaaaccac
     4501 caccaaatag gaataatacc ccccactcgg tgttttcttg aatctgttgc caatttgcga
     4561 cacgagtaat gcaaataagt gctgcggcaa tcaatgcaag aatggtgtca aagctcgcaa
     4621 ttttgccatt aattcccaga aatgcagaaa taatagggtt aattttatca ccaaaaatcc
     4681 aaccaagcgc aataaagacg aaaatagcca aggtgataat acgagaacga tttaattcaa
     4741 ttttctcaaa tgatcgatca aaactaactg aaaaatttgg tttaaatacg atatatagtg
     4801 ttgcaatcat taatgggaat aaaattagca taattggcaa accatatttt aaccaatcag
     4861 caaaagtcag attcaattga gaagcaacaa tcgcattcgg tgggcttccc actaaagtac
     4921 ccattccacc aatactggca ctataagcaa ttcctaataa cacgaaaaga taagtattat
     4981 ggttttgttt ctgatcaagt ttacttaaaa tccccattgc caaaggtaac atcattgcag
     5041 ctgtagctgt attactcatc cacattgaca aaaacgctgt taccgcaaat aaataaataa
     5101 ctgcaatcga taatttacct ttagctaatg ccataatttt attggcaatc atacgatcta
     5161 gctgctgaat gtgtaatgct gtcgctaagg caaagcctcc aaaaaataag aaaatcgttg
     5221 gatcagcaaa agcaacaaga gcttcttttg atttaaccag ccccagtgct acagccaaaa
     5281 tcggaattaa taatgccgta accgtaacgt gtaatgcttc tgttagccat aagacggcaa
     5341 tgaaaattaa caatgccaac cccttattgg cttcaggggt aaaaggcaag gtatttaaca
     5401 aaataataaa taaaatagca tctgcaacaa aaatcaagct attgcgtgta tttttactcg
     5461 gttcaataag aggagtattt tccataaaaa cctcacaaaa tatagataat cagtggtatc
     5521 actatatata aaaaaacgat ataggcaaat ataattgttg caaaagtgtg aagctcatca
     5581 aaaaatttaa cactaaaaaa taaattgctt aaagatacag cacctttgca aaaataaatc
     5641 aaaattacac cgcttgtagc gaaaggtatt caatctctaa cccaaatagt gattttgcca
     5701 atgcttgagt cattgcataa ctactgagag agcctttcgc ctcagccagc acaactcgag
     5761 taacgggaat atcggcaagc cctaaaaata atcgatagtt caacgcgctt tgcaacggta
     5821 aaaaagtagg attaaaagct gcattctcag tatatttacc acaaacaata cgctcaccta
     5881 cttgcagtgc aaccccacta aatgcgttgc tgtaaggggc ataagcatta ttggcagcaa
     5941 aaattgccgc ttgttgtaaa tgatcgccct taacctcaaa ttgttgcggt tgttcatcaa
     6001 ataagacttt ctcaatccct aaatctttcg gtccaaaact atccggcaaa tagctatgga
     6061 gcaaattatt ttggctatgc ggtaaatgta cttttaagct tgccgcactg tttaattcat
     6121 tcataaattg gcggcaatgc ccacaagggg tatagttcac aaccacatct gttatcaaag
     6181 tttcccctgc taaaaatgcg tgcgagattg cactttgctc tgcgtgaacg gattgttgca
     6241 tacattcccc ggaaaactct tggtttgccc caaaatagaa atctccgttt ttgccaatcg
     6301 caaccgcccc tacattaaaa tcggaaactg gtgtaaccgc ataacaggca gcaatggcaa
     6361 tgcaatataa agccaactca acacgagagc gtttaaattt ttcacagagt tcatcaacca
     6421 cttcgtaaga gagctgcccg tgaaaatctt gcttgataag ttgctcaata atagcttgtg
     6481 taacttcaca gtttttcgct gcttttaatt gttcaaaacg ctctgtaatg tctgttcgaa
     6541 acatactgta cctccgttta atgtttttta tagctgcaaa tcagtatccc tgccgtaatc
     6601 agtatggcac taataatatg gtaagtatga actgattcat ttaataaaat aatactgaac
     6661 attgctgcaa agagcggcgt aaaattagtc attaccgctc ctttagcaga accgactatt
     6721 gcaatgccga aattccaaaa cgcataagag agaatagaag ggccgataac caaatagcct
     6781 atcccactcc attgtaaagc ggtcaaattt gctaaatttt ttgcagattc tgctacatat
     6841 tcatagataa aaaatggcgt taacgttaga actgccagcc ccactaatac ggtcaaaaac
     6901 accgtattgc ttataccttg tggacgtagc cgaatcacac aacaataaac cgcccagctt
     6961 atagtagaag caatcgccca taaatcacct tgattaattg ccaagctgaa taagcgagtt
     7021 agcttccctt gcatcaatag ccacagcact cccagcaaac tgattattgc cccacttaga
     7081 ataatcgggc tgattttctc cttaaaaacg agccgattta aaaatagcac caatacaggc
     7141 gaaatagcta aatagagact cgcattcaat gctgttgtcg tttttaaacc ttcatataag
     7201 gtagccggga ataaaattac cccaagcaga cctaataccc acatcacacc taaacgaggt
     7261 tttaataagt gcattacccg ccaagttggg cgaaaaaaga gcaaaactaa aattaaaaaa
     7321 gccggcaacc aacgcaaata ggttaaggta ataggctgaa ctgccccact taacactttg
     7381 cctaatacaa aattcccacc ccaaaaaaga gtagcaacga ttaaactgaa ataccccaat
     7441 ttcagtgatg atgagatcat tgatgacctc gttctacaat cacacctaca ctgcttgctt
     7501 gggcaaccgc tttcggctta tgcagttcaa tccgaatcca agaaagttga tactcttttt
     7561 gtaatagttc cgccagttga taggcaacag tttcaactaa tttgaaaggt tgagattcaa
     7621 caaaatccag cactttttgc gatacttccg cataattcaa gcaatattgt acatcatcgg
     7681 tttctgccgc tttggaaaaa tcccacgcca tatcaatgtt aaaaaccaag cgttgcttaa
     7741 tcgtatgctc ccaattgtaa gccccaatgg aagcaaaagc ggttagttct cgaataaaaa
     7801 ccttatcact catttttcgt cctgtttta
//
LOCUS       DANLZD010000120         7822 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.120, whole genome shotgun sequence.
ACCESSION   DANLZD010000120 DANLZD010000000
VERSION     DANLZD010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7822
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.120"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..4190
                     /locus_tag="PXE26_001998"
     CDS             <1..4190
                     /locus_tag="PXE26_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5594557.1"
                     /translation="KTFTRSYLASFVTIVLSLPAVASVVRNDVDYQYFRDFAENKGPF
                     SVGSMNIDIKDNNGQLVGTMLHNLPMVDFSAMVRGGYSTLIAPQYLVSVAHNTGYKNV
                     QFGAAGYNPDSHHYTYKIVDRNDYEKVQGGLHPDYHTPRLNKLVTEVVPAAVTNAGTS
                     IKPYLNEERFPMFLRAGSGTQALRGKESNKTTGIAGAYEYLTGGTTLQLSKSSPDHWL
                     DYSSNLYQVSYGPLSTYALPGDSGSGSYAYDMNEKRWVLVGVLNFYNGMDNQFNRSAI
                     IRKDFHEKKFAEDIAGTINNTVQNAQFNWTAQGKSSSLSQSNNVQKLNVDLKDSSIAN
                     QNTSLPQENHGKTINFNGKDATIVLKQDIDQGAGALNLNANLTIRPETDQTWQGAGII
                     VGKDKKVNWQVKNPQGDRLSKLGEGTLYVNGRGQNLGDISVGDGIVILNQQADHQGRK
                     QAFNTVGIVSGRPTVVLGSADQVNPDNIYFGFRGGRLDLNGNSIAFKRIQNSDKHARI
                     VNHNRDHISTLIIQGQDPLTSNDLIWGKWASNSPADIYEYTNPYQNKRKDYFRLKGNS
                     RVYYPTNATSNDHWEFLSSNREQAIQKILDAKNLRQRYDTFNGFIGEDASNKTNGILN
                     VVFDTKTEVNTEQDKLKNIYTMSGGFNLNGELTLKGGTLLLSGHPTPHAYDIKNKHDV
                     VRENDWQDSHFTAKNITVNKMAQLYIGRNVNEVNSHFTATDKAKLNLGFINRSTPSCY
                     DSEYTGTTHCEVQAVISDNIFANLATTAIKGNVKLQNHSQLNLGKANLTGSVQADQTT
                     HITLANHSHWLNNGTSQIGHLTMEKGSILSLNDKFATTEIPVRFNKMIIQGNLKGNGR
                     INYTANLAKGESDHLQVDGIAEGNFVLAVRNSTTEANPKSSLNLLSLKNSNQEGNKAS
                     ISLENNYVDLGTYRYVLENRNHNYHLFNPLIPNSTSKEMNATSVSSIPKKESVTNVPT
                     LDKKETEQNLTQLQKDFSAHQLENQKAKQSMINAQSELRRLNSQLNVLQKYVNSRRLG
                     YYTQQAVLEQISIIQNKIKQTQTIFNDANATVKLTDQKLEEAKLALGSVNDLVLIKAS
                     APAMQATNQDTSMMNIIQADWISQYANTALSELSAQANSALQISNSLDRQLFKQSDKF
                     NVWSSVEHQKTEHKSDLYRPYKQQTNLTQLGIQMPIDNGLMFGVALSKNHANAEFNEG
                     VNGKSNLLMASLYGKWQSQQGTFISLDGSYGKAKNQLYLFGENHFTRRISSIGANIGH
                     QFDLAGVQIQPTIGARYYHFSGQDYTLGGAKISSPNTHFMTYQAGLKASKTFSLDDWK
                     VEPSITTHYVDASNKRLAVNVNNNNINQRFGRYLKTEAGIRFEHNQWQFDLHAGFING
                     NEIKKQHFAGVKLGYSW"
     gene            complement(4245..5339)
                     /gene="mobA"
                     /locus_tag="PXE26_001999"
     CDS             complement(4245..5339)
                     /gene="mobA"
                     /locus_tag="PXE26_001999"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDL5594558.1"
                     /translation="MSKTIEERISAVILAGGLARRMNGVEKGLQLFEGKPLISHILAR
                     LSPQVSDIWLNVNRSIEQYQQLYPAFSYYQDSLPDFQGPLSGMLAGFEQIESDYLLFV
                     PCDTPFMPELLLQKLKTALRINNVQIAYAHDGERPHPTFALIHRSVQEDLKAYLGSNQ
                     QQLLAFFQSQKSVAVDFSEQKSAFTNVNTLEDLSRVSQFPVKNLAITGYSGTGKTTLL
                     EKLIPKLTACGIRVGLIKHSHHNVDVDKKGKDSYRLREAGANPTMIVCDERWALMTET
                     KQAVEFSQLIAKFNPQEVDLVFVEGFKHETLPKIQLHRKGIEKPLPELDQWTIATATD
                     YPLERENWLDINNIGGIADFIKNWLENKAS"
     gene            5426..5695
                     /locus_tag="PXE26_002000"
     CDS             5426..5695
                     /locus_tag="PXE26_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1040 family protein"
                     /protein_id="HDL5594559.1"
                     /translation="MKCERLEELLELLGEHWRKNPDLHLIDILQQLSVEVGEPDNFKA
                     LSDEVLIYQLKMRNAGKFEPIPGIKKDYEDDFKTALLRARGILND"
     gene            5759..6397
                     /locus_tag="PXE26_002001"
     CDS             5759..6397
                     /locus_tag="PXE26_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDL5594560.1"
                     /translation="MKKLALKTAFVALSALFTFNSTAIAADPTAGKEYIEVRKAPSAQ
                     KEVVEFFSFYCPHCYDFELSYKIPSQIKEKLPSDSKLVQYHVNFLGRQSEDLTRAWAL
                     AMALGAEDKVKTALFEGAQKDAFKSMDDIRSVFLANGITAEQFDSGINSFAVNGLVNK
                     QVQLAEDFQIRGVPAFFVNGQYQLNLEGFADSSSTNDFIKRYVDAVVFLSKK"
     gene            6481..7257
                     /locus_tag="PXE26_002002"
     CDS             6481..7257
                     /locus_tag="PXE26_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDL5594561.1"
                     /translation="MTKLSILNLVPIREGQTAKQAVDSMVKLAKHAESIGIERYWIAE
                     HHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLPNHSPYIVAEQYGTLETLYPNRV
                     ELGLGRAPGTDMRTATALRRNAQSLPFPDEISELKGYFEGTNSVSAYPAQGLNVPFYI
                     LGSSPESAYLAAERGLPYAFASHFAPRFMDDAVRIYRTHFKPSEVLDKPYVILGVNAI
                     AAETDQEAEQLATTQTQFFLNVVTNAQNYLQPPVESDDKV"
     gene            7267..7521
                     /locus_tag="PXE26_002003"
     CDS             7267..7521
                     /locus_tag="PXE26_002003"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="luciferase"
                     /protein_id="HDL5594562.1"
                     /translation="MKAEIVPHFGPVSFQQNALYNQEKPVVRQMTACSLIGSRESIEQ
                     QLKSLKARIEIDEIMAVSYIFDEQKQHQSYTWLKEIADKV"
     gene            7523..7816
                     /locus_tag="PXE26_002004"
     CDS             7523..7816
                     /locus_tag="PXE26_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL5594563.1"
                     /translation="MSKTMQQKAADAHNMCKLKGDSMLDNSDRQIAFEAVYDSEEIAV
                     QAVEFFTQKAKSVETEPCDIQSEITPIIDGFLMKMWITFSCQAEVILFQMAVR"
BASE COUNT         2611 a         1552 c         1475 g         2184 t
ORIGIN      
        1 ccaaaacatt tactcgttct tatcttgctt cttttgtaac aatcgtatta agtttacctg
       61 ctgtagcatc tgttgtacgt aatgatgtgg actatcaata cttccgcgat tttgccgaaa
      121 ataaaggacc attttcagtt ggttcaatga atattgatat taaagacaac aatggacaac
      181 ttgtaggcac gatgcttcat aatttaccaa tggttgattt tagtgctatg gtaagaggtg
      241 gatattctac tttaattgca ccacaatatt tagttagtgt tgcacataat actggatata
      301 aaaatgttca atttggtgct gcaggttata accctgattc acatcactat acttataaaa
      361 ttgttgaccg caatgattat gaaaaggttc aaggagggtt gcacccagac tatcatactc
      421 ctcgattaaa taaattagta acagaagttg tgcctgccgc agtcaccaat gcaggtacat
      481 ctattaaacc ctacttaaat gaagaacgct tccctatgtt tcttcgtgct ggttcaggga
      541 cacaagcgct aagaggaaaa gaaagtaata aaacaactgg aatcgctggt gcttatgaat
      601 atcttactgg cggtaccaca ttacaattat ctaaaagctc ccctgatcac tggttagatt
      661 attcaagtaa cctttatcaa gtaagctatg gaccactttc aacctatgca ctacctggtg
      721 atagtggttc aggttcttac gcctatgata tgaacgaaaa acgatgggta ttagttggtg
      781 tgctcaattt ctataatggt atggataatc aattcaaccg ctctgcgatt atccgtaaag
      841 atttccacga gaaaaaattt gccgaagata ttgcaggaac aatcaataat accgtacaaa
      901 atgcacaatt caattggact gctcaaggta aatccagctc tcttagtcaa tcaaataatg
      961 tgcaaaaact caacgttgat ctaaaagata gtagcattgc aaaccaaaac acttctctgc
     1021 cacaagaaaa tcacggtaaa accattaatt ttaatggtaa agatgcaact attgtactaa
     1081 aacaggatat tgaccaaggt gcaggtgcat taaatctgaa cgctaatctc actattcgtc
     1141 ctgaaacaga ccaaacttgg caaggtgcag gtattatcgt cggtaaagat aaaaaagtga
     1201 attggcaagt aaaaaatcca caaggcgatc gtttatctaa actcggggaa ggaacactct
     1261 atgtaaatgg acgtggacag aatcttggcg atatcagtgt aggtgatggt attgtaatac
     1321 ttaaccagca agccgatcac caaggaagaa aacaggcctt taatacagta ggaatcgtaa
     1381 gtggtcgccc cactgttgtg ctaggtagtg cagatcaagt taatcccgat aatatttact
     1441 ttggatttcg cggaggtcgt ttagacctaa acggtaacag catcgccttt aaacgtattc
     1501 aaaacagcga taaacatgct cgtattgtaa accacaatcg cgatcacatt tctaccttaa
     1561 taatacaagg ccaagatcct ctcactagta atgatcttat atggggaaaa tgggcaagta
     1621 atagcccagc agacatttac gaatatacca atccttatca aaataaacgc aaagattact
     1681 tccgtctgaa aggtaattcg agagtatatt atccaacgaa tgctacaagt aacgatcact
     1741 gggaatttct ttccagtaac cgcgagcaag caatacagaa aatcctagat gccaaaaact
     1801 taagacagcg ctatgacacg tttaatggtt ttatagggga agatgcttcc aataaaacta
     1861 atgggatatt aaatgtcgtg tttgatacaa aaacagaagt aaatacagaa caagataaat
     1921 taaagaatat ctacacaatg tcgggaggat ttaaccttaa tggtgaactc acccttaaag
     1981 gtggtacatt gttgctttct ggtcacccaa cgccacacgc ttatgatatt aagaataagc
     2041 atgatgttgt gcgtgaaaac gattggcaag acagccattt tactgctaaa aatatcacgg
     2101 taaataaaat ggcacaactc tatatcggga gaaatgtcaa tgaagtaaat agtcacttta
     2161 ctgcgactga taaagccaaa ctcaatttag gatttattaa tcgttcaacg ccaagttgct
     2221 atgattctga atacacaggc actacacatt gtgaagtgca agcggtcatt tccgataata
     2281 tttttgcaaa tctagcaaca accgccatta aaggtaatgt taaattacaa aaccatagcc
     2341 aattaaattt aggcaaagca aacctcactg gttctgtaca agctgatcaa acaactcata
     2401 tcactttagc aaatcacagt cactggttaa acaatggtac gagccagatt gggcatctta
     2461 caatggaaaa agggtcgatc cttagcctaa acgataaatt tgctaccacg gaaatcccag
     2521 tccgattcaa caagatgatc atccaaggta atctaaaagg taatggacga attaactata
     2581 ccgcaaattt agccaagggc gaatctgatc atctccaagt tgacggtatt gctgaaggaa
     2641 attttgtcct tgccgttaga aatagcacaa ctgaagcaaa tccaaaaagc tcattaaacc
     2701 tactaagctt aaaaaatagc aaccaagaag gcaataaagc ttctatttct ctagaaaata
     2761 attatgttga tctaggtact tatcgttatg tattagaaaa tcgtaatcac aattaccatt
     2821 tatttaatcc attaatacca aattcaacct ctaaagagat gaatgctaca tctgtatcct
     2881 ctattccaaa aaaggaatct gttactaatg ttcctacttt agataagaaa gaaactgaac
     2941 aaaatcttac tcaactacaa aaagattttt cagcacacca attagaaaat caaaaagcaa
     3001 aacaatctat gataaatgct caatctgagc taagacgact caattcacaa ctgaatgtat
     3061 tgcaaaaata tgtgaattct cgtcgcttag gttactatac tcagcaggca gttttagaac
     3121 aaattagcat tattcaaaat aaaattaaac aaacacaaac aatatttaat gacgctaatg
     3181 caactgtaaa actcacagat caaaagctag aagaagccaa attagctcta ggctctgtaa
     3241 acgatcttgt attaataaaa gcctctgctc cagcaatgca agcaactaat caagatacga
     3301 gtatgatgaa tattattcaa gcagattgga taagccaata cgctaacaca gcactttctg
     3361 aactctcggc acaggctaat tctgctctgc aaatcagtaa tagcttagat cgccaactct
     3421 tcaaacaaag cgataaattc aacgtatgga gcagcgtcga acatcagaaa accgagcata
     3481 aatcagattt ataccgcccg tataaacaac aaaccaacct gacccaactg ggcatacaaa
     3541 tgccgataga taacggttta atgtttggag ttgcattatc taaaaaccac gctaacgcgg
     3601 aatttaacga gggtgtaaac ggtaaatcga atctactaat ggcaagccta tatggtaagt
     3661 ggcaatctca acaaggcact tttatcagcc ttgatggcag ctacggtaaa gcaaaaaacc
     3721 aactctacct atttggtgaa aaccacttta cccgccgaat ttcctctatt ggtgctaaca
     3781 ttggacatca atttgacctc gcaggagttc aaattcagcc aacaatagga gcaagatact
     3841 accatttcag cggccaagac tatacactag gaggagcgaa aatcagctca ccaaataccc
     3901 actttatgac atatcaagcg ggtctaaaag ctagtaaaac cttttcattg gatgactgga
     3961 aagttgaacc aagcattaca acccactatg tggatgcaag taacaaacgc ttagcagtaa
     4021 acgtcaataa taacaatatc aaccaacgtt tcggtcgcta tctgaaaacc gaagctggta
     4081 tccgatttga acataaccaa tggcaattcg acttacacgc tggtttcatt aacggcaacg
     4141 aaatcaaaaa acaacatttt gctggtgtta agctaggata tagctggtaa gaaaaagccc
     4201 ctagaactat ttctaggggc tttttctact cttaaaaaga gtatctaact tgccttattt
     4261 tctaaccaat tcttaataaa atctgctatt cccccaatat tattaatatc caaccaattt
     4321 tctctctcaa gcgggtaatc cgttgcggtg gcaatcgtcc attggtctag ctctggcaat
     4381 ggtttttcaa tccctttgcg gtggagctga atttttggca aggtttcgtg tttaaagcct
     4441 tctacgaaaa cgagatcaac ctcttgcggg ttgaattttg caattaattg agaaaattcg
     4501 accgcttgtt tggtttctgt cattaatgcc caacgttcat cgcacacaat cattgtcggg
     4561 tttgctcctg cttcacgtag gcggtagctg tctttgcctt ttttatctac atcaacgtta
     4621 tggtgggaat gtttaatcag cccaacccga ataccgcaag cggtcaattt tgggattaat
     4681 ttttccaata aggtggtttt acctgtgccg ctgtagcctg taattgcaag gttttttaca
     4741 gggaattggc ttactcggct taaatcttcc aatgtattca cgttggtgaa tgccgatttt
     4801 tgttcggaaa aatcaactgc cacgcttttt tgtgattgga agaacgcaag caattgctgt
     4861 tggtttgagc ctaaataggc tttcaaatct tcttgtaccg aacgatgaat caacgcaaaa
     4921 gtgggatgtg gacgctcacc atcatgggca tatgcaattt gtacgttatt tatccgcaaa
     4981 gcagttttta atttttgcaa taacagctca ggcataaagg gcgtatcgca aggcacaaaa
     5041 agcaaatagt cactttcaat ttgctcaaat cctgccagca ttccactgag tggaccttga
     5101 aaatcaggca agctatcttg atagtaagaa aaagcaggat aaagctgctg atattgctca
     5161 atagaacgat tgacattaag ccaaatgtca ctaacttgtg gtgaaagtcg ggctaaaatg
     5221 tgtgaaataa gcggttttcc ttcaaaaagt tgtaaccctt tttctacccc attcattcga
     5281 cgagctaaac cgcccgctaa aatcacggct gaaatgcgtt cttctattgt tttactcaca
     5341 gctttatccc ttaaaatttt gcaaaaataa gagtaaaagt atattatttc gtttaatttc
     5401 caacaagttt tttaaggggt aaaagatgaa atgcgaacgt ttagaagagt tattagagtt
     5461 acttggcgaa cattggcgta aaaatcctga cttacacctc attgatattt tgcagcagct
     5521 ttcagttgaa gtgggcgagc ctgataattt caaagcgtta agcgatgaag tgttaatcta
     5581 tcagcttaaa atgcgaaatg caggcaaatt tgagcctatt cccggcataa aaaaagatta
     5641 tgaagatgat tttaaaacgg ctttattgcg agctcgtgga attttaaacg attaagattg
     5701 tcttatccgt tagctagttt agcatttatt atttatcaac atttttgaag gaatcattat
     5761 gaaaaaattg gcattaaaaa cggcatttgt tgcactttct gcccttttta catttaactc
     5821 aacggcaatc gctgctgatc caaccgcagg caaagaatat atcgaagtgc gtaaagcacc
     5881 ttctgcacaa aaagaagtgg tggaattttt ctcattctac tgcccacact gttatgattt
     5941 tgaattaagc tacaaaatcc caagccaaat caaagaaaaa ttaccaagcg atagcaaatt
     6001 agtgcaatat cacgttaatt tcttaggtcg ccaatctgaa gatttaactc gtgcttgggc
     6061 attagcaatg gcattaggtg cggaagataa agtaaaaacc gcattatttg aaggtgctca
     6121 aaaagacgca ttcaaatcaa tggacgatat tcgctctgta ttcttagcaa acggcattac
     6181 agctgaacag tttgatagcg gtattaatag ctttgcggta aatggcttag tgaataaaca
     6241 agttcaatta gcggaagact tccaaattcg tggtgtgcct gcattcttcg taaatggtca
     6301 ataccaactc aacttagaag gctttgcaga ttcttcatca acgaatgatt tcatcaaacg
     6361 ttatgttgat gcggttgtgt tcttaagcaa gaaataaccc cttaaaatag ttagggtttt
     6421 tacaatgctg agtaggtaaa tcctattcag cattttttat atgcaaactc ggagaacaaa
     6481 atgacaaagt tatctatcct aaaccttgta cctattcgtg aagggcaaac tgccaaacaa
     6541 gcggtcgatt ctatggtgaa attagcaaaa cacgcggaaa gtatcggcat tgaacgctat
     6601 tggattgcag agcaccacaa tatgaaaaac cttgccagct cggcaacaca gctcctcatt
     6661 cagcatgccc tttctcacac tgaaaaatta agagtgggat caggtggcgt gatgttgcct
     6721 aaccatagtc cttatattgt ggcagagcaa tacggtacgc ttgaaacact ctaccctaac
     6781 cgtgtagaac ttgggcttgg gcgagcacca ggcaccgata tgcgaaccgc taccgcttta
     6841 cgccgtaatg cacaaagtct gccatttcct gatgaaatca gcgaactaaa aggttatttt
     6901 gaaggcacaa attctgtgtc tgcctaccct gcacaggggt tgaatgtgcc gttttatatt
     6961 ttaggctcaa gccctgaaag tgcctattta gcagcagaac gtggcttgcc ttatgccttt
     7021 gcttcacatt tcgctcctcg ttttatggac gatgcggtgc gaatttatcg cacacacttt
     7081 aagccgtctg aagtgttaga taaaccctat gtgattttag gtgtgaatgc gattgcggca
     7141 gaaaccgacc aagaggcaga acagcttgct accactcaga ctcagttttt cttaaatgtt
     7201 gttaccaatg cccaaaacta tttacaaccg cccgtcgaat ccgatgataa agtgtgaaaa
     7261 aattttgtga aagcggaaat cgtaccgcat ttcgggcctg tttcgttcca acaaaatgcg
     7321 ttatacaacc aagagaaacc cgttgttcgc caaatgactg cttgttcact tatcggtagc
     7381 cgagagagca ttgaacaaca gctcaagtca ttaaaagcac gcattgaaat tgatgaaatt
     7441 atggcggtaa gctacatttt cgatgagcaa aaacagcatc aatcctatac ttggttaaaa
     7501 gagattgcag ataaggtgtg atatgagcaa aacaatgcaa caaaaagccg ctgatgcaca
     7561 taatatgtgt aagctaaaag gcgactctat gttagataac tcagaccgcc aaattgcctt
     7621 tgaagcagtg tatgatagtg aagaaatagc tgtacaagcg gtcgaatttt tcacacaaaa
     7681 agcaaaatcg gtagaaaccg agccttgcga cattcaaagt gaaatcacac ccattataga
     7741 tggctttctg atgaaaatgt ggataacttt cagttgccaa gcagaagtaa tcttatttca
     7801 aatggcggtg agatagatat aa
//
LOCUS       DANLZD010000121         7678 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.121, whole genome shotgun sequence.
ACCESSION   DANLZD010000121 DANLZD010000000
VERSION     DANLZD010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7678
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.121"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            316..2772
                     /gene="thrA"
                     /locus_tag="PXE26_002005"
     CDS             316..2772
                     /gene="thrA"
                     /locus_tag="PXE26_002005"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase I"
                     /protein_id="HDL5594564.1"
                     /translation="MRVLKFGGTSLANPERFMQAAEIIEKAHLADQAAGVLSAPAKIT
                     NHLVAIVDKAIAGESFQSNLSEATEIFHNIINGLYATNNHFAKEALLALVEAELNQIQ
                     QVAAEAAQTKSLSDKIAATIHCRGEKLSIAMMQAWFEAKGYEVTRIDPVEKLLAHGSY
                     LESSVDIAESTKRVDAGSIPKKNIVLMAGFTAGNEQGELVLLGRNGSDYSAACLAACL
                     KADVCEIWTDVDGVYTCDPRLVPDAVCLETMSYQEAMELSYFGAKVIHPRTIGPLVPL
                     NIPCLIKNTGNPDGKGTLIDGNVANDNLKVKGITNLDNVAMFNVSGSGMQGMVGMAAR
                     VFSTMSKAGISVILITQSSSEYSISFCVPAKSAEKALAALNTEFAQELSENLLDPIDI
                     IKDLSIVSVVGDGMRTAKGIAARFFSALAQANISIVAIAQGSSERSISAVVPLNKAIE
                     AVKATHKSLFNSKRVVDMFLVGVGGVGSELIEQVKQQKEFLAKKDIEIRVCALANSDK
                     MLLNENGLNLDNWKEDLEKAIQPSDFDVLLSFIKFHHVVNPVFVDCTSAQSVANLYAR
                     ALKEGFHVVTPNKKANTSGYDYYLEMRENARQSQHKFLYETNVGAGLPVIENLQNLLA
                     AGDEVEKFEGILSGSLSFIFGKLEEGLTLSQATLIAKEKGFTEPDPRDDLSGADVARK
                     LLILVRETGLPLEFEDIEIEGVLPKGFSEGMSRDEFLQALPSLDEEFSKRVEAAKAEG
                     KVLRYVGSITGDKCRVAIEAVDENHPLYKVKDGENALAFLTRYYNPIPLLLRGYGAGN
                     SVTAAGIFADILRTLQGGVN"
     gene            2772..3719
                     /gene="thrB"
                     /locus_tag="PXE26_002006"
     CDS             2772..3719
                     /gene="thrB"
                     /locus_tag="PXE26_002006"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HDL5594565.1"
                     /translation="MALRIYAPASSANISVGFDSLGAAISPIDGSLLGDVVQIEESEQ
                     QFELESAGYFVRKLPKEPQKNIVYQAYVLFSERLKLRNGSVKNLRLTLEKNMPIGSGL
                     GSSACSIVAALVALNKFHDEPFSKMELLEMMGELEGRISGSIHYDNVAPCYLGGLQLM
                     TQSLGNICQPLPFFDEWYWVLAYPGVEVSTAEARAILPKSYTRQDMIQQARYLGSFVH
                     ACHTHQDILAATMMKDLIAEPYREDLLPNFPAVRQGCKDLGALAVGISGSGPTMFAIA
                     PDLEHAQRLVSYLEKEYLQNNEGFIHICKVDNQGARELK"
     gene            complement(3834..5210)
                     /gene="cysS"
                     /locus_tag="PXE26_002007"
     CDS             complement(3834..5210)
                     /gene="cysS"
                     /locus_tag="PXE26_002007"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HDL5594566.1"
                     /translation="MLKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTF
                     VSFDVIARYLRYSGYNLRYVRNITDVDDKIIKRALENNETCDELVDRMIAEMHKDFDA
                     LNILRPDVEPRATKHIPEIIAMVEKLIHNGHAYVAADGDVMFDVESFQKYGALSRQNL
                     EQLQAGARVEIKSIKKNPMDFVLWKMSKAGEPSWESPWGNGRPGWHIECSAMNSKELG
                     EHFDIHGGGSDLMFPHHENEIAQSCCAHGGDYVNYWLHTGMLTIDKEKMSKSLGNFFS
                     IRHMLGLYDAESLRYFFLTAHYRSLLDYSIDNLDLARSALERLYTALRGCDVSGEAIG
                     EHYVEAFKTAMDDDFNTPGALAVLFEIARELNKLKTEDMAKANGLAVRLKELAGVLGL
                     LEQDPDAFLKGDANDDETAEIEALIKQRNEAKAAKNWAVADEVRDKLKAINIVLEDTP
                     NGTIWRKA"
     gene            5366..5875
                     /locus_tag="PXE26_002008"
     CDS             5366..5875
                     /locus_tag="PXE26_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5594567.1"
                     /translation="MITLHTNFGDIKIELNFEKAPITAKNFEDYAKEGFYNGTIFHRV
                     IDGFMIQGGGMTAGMAEKPTKDPIQNEANNGLSNKRGTIAMARTSDPHSASSQFFINV
                     ADNTFLDYRSKEMFGRSVVQDWGYAVFGEVVEGMDVVDKIKGVKTGNKGFHQDVPVED
                     VVIESVSVA"
     gene            complement(5967..6896)
                     /locus_tag="PXE26_002009"
     CDS             complement(5967..6896)
                     /locus_tag="PXE26_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDL5594568.1"
                     /translation="MEIALLLADKILQLTLMVLLGYLIVKTKLLKSEHSYPISVIGLY
                     IISPAMLITAFQVDYTTEILNGLYLAFLISVLLNGLLILLGWLLKRALKLDNIEQATA
                     IYSNSGNLIIPIVASLFGNEWVIYSTAFIVVQNVLFWSHLRLLICGKGNVPFRKMIFN
                     INIIAIVIGMMLFLLHIKLPATLANTLSTLGHMLGPLAMLVAGMLIAAIPFKEIITDK
                     RIYLVAFLRLIFIPLILLAVIKLGGFASWIENGKTVVMITFLATISPSAATATQMAVA
                     YGQDAKKASAIYGVTTLLCVFTMPLIIWLYQFL"
     gene            complement(6899..7657)
                     /gene="fdhD"
                     /locus_tag="PXE26_002010"
     CDS             complement(6899..7657)
                     /gene="fdhD"
                     /locus_tag="PXE26_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HDL5594569.1"
                     /translation="MKQKDDEENLISEVPVALVYNGISHTVMMATPANLEDFALGFSL
                     AEGILNAPSELYGLDVIEQENGVEIQLEISSRQFVALKDKRRSMAGRTGCGICGVEQL
                     EQVNQSCKIVKKNNRLQNVNPLILEDCLLQLENAQFLSKETGASHAAAFFTPDGKLLA
                     IREDVGRHVALDKLIGWYAKADFPIGFVFVTSRASFEMVQKCLAVGIEMLCAISATTE
                     MAVNMARENQFTLLAFARKGKATIYAGEERLALN"
BASE COUNT         2268 a         1634 c         1615 g         2161 t
ORIGIN      
        1 aggttcctaa tcaaattctt gcttttaatt gttttatata gaaagacaaa gaaatttaaa
       61 aaaatgtggt gaaaaacagc gttaagccca ttgacaaagg cattattttc acgcattctt
      121 gaaccattat tcactctctt gaccgagatt ccgccaatga attgttttaa tatgatgaca
      181 acgattatta ccaccattat gtcaccaaca tagtgcgggt tttaattggc tgaaataatg
      241 aaagaataaa ccgaaaaccc gctacaagcg ggtttttttg tataaaaatt tacaaataat
      301 ttatcaggag taactatgcg agttcttaaa tttggaggca cttctcttgc caaccctgaa
      361 cgctttatgc aagcggcaga gattatcgag aaagctcatt tggcagatca agctgccggc
      421 gtattatccg ccccagccaa aattaccaat catcttgtcg ctattgtaga taaagcgatt
      481 gccggtgaat catttcaatc taacctttct gaagctaccg agattttcca caacatcatt
      541 aacggcttat atgctacaaa taatcacttt gctaaagaag cactgttagc cttagtggaa
      601 gcggaattaa accaaattca gcaagtggct gcagaagcag ctcaaactaa atcgttgtca
      661 gataaaattg ctgccactat tcactgccgt ggtgaaaaac tctctattgc gatgatgcaa
      721 gcgtggttcg aggcaaaagg ctatgaagtc actcgtatcg accctgttga aaaattattg
      781 gctcacggca gctatttgga atcttcggtc gatattgccg aatccaccaa gcgagttgat
      841 gcaggttcaa ttccaaagaa aaatatcgtg ctaatggctg gttttaccgc aggtaatgag
      901 caaggcgaac tggtgttatt agggcgtaac ggttcagatt attctgccgc ttgtttggca
      961 gcgtgtttaa aagccgatgt ttgtgaaatc tggacggacg tagatggcgt ttacacctgc
     1021 gaccctcgtt tggtgcctga tgcagtatgc ttagaaacaa tgagctatca agaggcaatg
     1081 gagctttcct actttggggc gaaagtgatc caccctcgca ccatcgggcc attagtgccg
     1141 ctcaatattc cttgtttaat caaaaatacc ggcaatccgg acggaaaagg cacattaatt
     1201 gatggcaatg tggcaaacga taatctcaaa gtaaaaggga ttaccaacct tgataacgtg
     1261 gcgatgttca acgtttcagg ttcaggaatg cagggaatgg tgggcatggc tgcccgtgtg
     1321 ttctcgacga tgtcaaaagc cggtatttcg gtgattttaa ttacccaatc atcatcagaa
     1381 tatagcatca gcttctgcgt gccggcaaaa tcggcagaaa aagcgttagc ggctctaaat
     1441 actgaatttg cacaagagtt atctgaaaac ttacttgacc cgattgatat tattaaagat
     1501 ttatccattg tttcggtagt gggtgatggt atgcgtaccg ccaaaggaat tgcggctcgc
     1561 ttcttctctg ccctagccca agccaacatc agtattgtgg caattgcaca gggttcatct
     1621 gagcgttcca tttctgctgt cgtgccgtta aacaaagcga ttgaagcagt aaaagcaact
     1681 cacaaatcgc tatttaacag taaacgtgtg gtggatatgt ttttagtggg tgtaggcggt
     1741 gtgggtagcg aactcatcga gcaagtcaaa caacaaaagg agtttttggc aaagaaggat
     1801 attgagatcc gtgtgtgtgc tttagctaat tcagataaaa tgttactcaa cgaaaacggc
     1861 ttaaatttag acaactggaa agaagattta gaaaaagcaa ttcagccgtc agactttgat
     1921 gtattgcttt ctttcatcaa attccaccac gtggtaaacc cagtatttgt agattgcact
     1981 tcggcacaat cggtggcgaa cctgtacgca cgagccttaa aagagggctt ccacgtggta
     2041 acaccaaaca aaaaagccaa tacatcaggt tacgattact acttagaaat gcgtgaaaac
     2101 gcccgccaaa gccagcacaa attcctctac gaaactaatg taggggcagg tttaccggta
     2161 attgaaaact tacaaaacct attagctgcc ggtgacgaag tagagaaatt tgaagggatt
     2221 ttatccggct cgctctcttt cattttcggc aaattagaag aaggtttaac cctttcgcaa
     2281 gcaactttaa tcgccaaaga aaaaggcttt accgagccag atccacgaga tgatttatcc
     2341 ggtgcagatg ttgctcgtaa actcttaatt cttgttcgtg aaaccggctt accgcttgaa
     2401 tttgaagata ttgaaattga aggcgtattg ccaaaaggct tctcggaagg aatgagtcgt
     2461 gatgagtttt tacaagctct accgtcttta gacgaagaat tcagcaagcg tgtagaagct
     2521 gccaaggctg aaggcaaagt gttgcgttat gtgggctcga tcacaggtga taaatgccga
     2581 gttgccattg aagccgtgga cgaaaaccac ccactttaca aagttaaaga cggcgaaaat
     2641 gcccttgctt ttctcacacg ttactacaac cctattccat tattattgcg tgggtatggt
     2701 gcgggcaata gcgtaaccgc tgccggtatc tttgcagata ttctgcgtac tttacaagga
     2761 ggagtgaact aatggcgtta cgaatttatg ccccagcttc aagtgcaaat attagtgtgg
     2821 gttttgactc attaggcgct gcaatctccc cgattgacgg ctctttgctc ggcgatgtag
     2881 ttcaaattga agagagtgaa caacaatttg agctagaaag tgcaggttat tttgtacgta
     2941 aattgcccaa agaaccacaa aaaaacattg tctatcaagc ctatgtgcta tttagcgaac
     3001 gcttgaaatt acgtaacggc agtgtaaaaa atttacgctt aacacttgaa aaaaatatgc
     3061 cgattggctc agggctaggc tcaagtgcct gctcgattgt tgcagcatta gtggcactca
     3121 ataaattcca cgatgaaccg ttctccaaaa tggaattact ggaaatgatg ggcgaattgg
     3181 aaggcagaat ttcaggctca atccactacg acaacgttgc cccttgctat ttaggtggcc
     3241 tgcaattaat gacacaatcg ctcggcaata tttgccaacc tctgccattc tttgatgaat
     3301 ggtattgggt gcttgcctac ccgggcgtgg aagtatcaac cgccgaagcc cgtgctattt
     3361 tgccgaaaag ctatactcgt caagatatga ttcagcaagc ccgctactta ggatctttcg
     3421 tccatgcttg ccatacacat caagatatct tggctgctac aatgatgaaa gacctaattg
     3481 ctgagcctta ccgtgaagat ttactgccga actttccggc tgttcgtcaa ggctgtaaag
     3541 acttaggtgc gttagcggtt ggtatttcag gttccggtcc gacaatgttt gcgatagccc
     3601 ctgatctcga acacgctcaa cgtttagtga gctatttaga gaaagaatat ctgcaaaaca
     3661 acgaaggctt tattcatatc tgtaaagtcg ataatcaagg agcaagagag ctgaaatagc
     3721 cctctcgaac aaccatatca ctaaataact taaaggactg actccaatac cacttggagc
     3781 agcccttttt gattaatttt ttgaaaagtc tatcacttat aaacaatcga aggctatgcc
     3841 ttacgccaaa ttgtgccgtt tggggtgtct tcgaggacaa tatttatcgc tttgagctta
     3901 tctcgcactt catcggcaac cgcccagttt ttagccgctt tggcttcgtt gcgttgtttg
     3961 attaaggctt cgatttctgc cgtttcatcg tcattcgcat caccttttaa aaacgcatcg
     4021 gggtcttgtt ccagtaagcc tagcacgccg gctaactctt ttaaacgaac ggctaaaccg
     4081 ttggcttttg ccatatcttc ggttttgagt ttgttcaact cacgggcaat ttcaaataac
     4141 accgctaatg cccccggggt gttgaaatca tcgtccattg cggttttaaa ggcttctaca
     4201 tagtgttctc cgatggcttc gcccgacaca tcacaaccac gcagagcggt atataaacgc
     4261 tcaagagccg aacgggctaa atcaaggttg tcaatgctgt aatctaataa cgaacggtaa
     4321 tgagcggtta agaagaaata acgtaacgat tcggcatcgt ataagcctaa catatggcga
     4381 atgctgaaga aattgcccaa agatttcgac attttttctt tatcaatggt aagcattcca
     4441 gtgtgtaacc aataattgac ataatcgcca ccgtgagcac agcaagattg tgcaatttcg
     4501 ttttcgtgat gcgggaacat taaatccgag ccaccgccgt gaatatcaaa atgttcgccc
     4561 aactctttgc tattcattgc cgaacattca atatgccagc ccggtctgcc attgccccac
     4621 gggctttccc agcttggctc accggctttc gacattttcc acaagacaaa atccatcggg
     4681 tttttcttga tggatttaat ttcaaccctt gcaccggctt gtagttgctc taaattttgg
     4741 cgggataatg caccatattt ctggaacgat tccacatcaa acatcacatc gccatcggct
     4801 gcgacataag cgtgtccgtt gtgaatcagt ttttctacca tcgcaataat ttcaggaata
     4861 tgcttggtgg ctcgtggctc aacgtccggg cgaagaatgt ttaacgcatc aaaatctttg
     4921 tgcatttcag caatcattct atccactaat tcatcgcaag tttcgttatt ttctaacgca
     4981 cgtttgatga ttttgtcgtc cacatcggta atgttacgca catagcgtaa attgtagcct
     5041 gaataacgta aataacgggc aatcacatcg aaagagacaa aagtgcgacc gtgcccaaaa
     5101 tgacaaagat cgtaaaccgt gacgccacag acgtacattc ccacctgatt tgggttaatc
     5161 ggtttaaatt cttctttttc acgttttaag gtgttataaa ttttgagcat aaagtcctct
     5221 tgtgtaacat tcagtaacaa atggggctaa gtatagcgaa taagcggtct gattttgaga
     5281 tttttttgca atttggcgta aactttttaa taatagcgag cgaaatttat tttccattcc
     5341 atttttattt ataaaggaac aaagaatgat tacattacat accaatttcg gtgacattaa
     5401 aatcgaatta aactttgaaa aagccccgat taccgctaaa aactttgaag attacgctaa
     5461 agaagggttt tataacggca cgattttcca ccgtgtgatt gacggcttta tgattcaagg
     5521 tggcggaatg acggcaggta tggctgaaaa accgacaaaa gatccgattc aaaacgaagc
     5581 gaacaacggt ttaagcaaca agcgtggcac aatcgcaatg gctcgcactt ctgatccgca
     5641 ttctgcttcg tcacagtttt tcattaatgt ggcggataat actttcttag attatcgctc
     5701 aaaagagatg ttcggcagaa gtgtagtgca agattggggc tatgcagtat ttggcgaagt
     5761 ggttgaaggt atggacgtgg tcgataaaat caaaggcgta aaaaccggca ataaaggctt
     5821 ccaccaagac gtgccggttg aagatgtggt gattgagtct gtaagcgttg cctaattccg
     5881 caaattagcc tacaagcggt tgatttttca caattttttg catttctcag cgttgcaaaa
     5941 aagtagcaga aatcgactgc ttgtttttat agaaattgat acagccaaat aatcagcggc
     6001 attgtaaaca cacaaagtaa agtggttacg ccataaatcg cactggcttt tttggcatct
     6061 tgcccgtaag ccaccgccat ttgggtcgcc gttgcagcag aagggctgat ggtggctaag
     6121 aatgtaatca ttaccaccgt ttttccattc tctatccagc tcgcaaaacc gccgagttta
     6181 atcaccgcta acaaaatcag cggaataaaa atcaagcgga gaaaagccac caagtaaatg
     6241 cgtttatcgg taataatctc tttaaatgga attgctgcaa ttaacatccc tgccacaagc
     6301 attgctaaag gccctaacat atgccctaaa gttgagagcg tgtttgcaag cgtagcgggc
     6361 agtttgatat gtagcaaaaa caacatcata ccaatcacaa tcgcaataat gttgatatta
     6421 aagatcatct ttctaaacgg cacattgcct ttgccacaaa tcagcagccg taagtgagac
     6481 caaaacaaca cattttgcac cacaataaaa gccgttgaat aaatcaccca ttcattgccg
     6541 aacagggagg caacaatcgg aataattaag ttgccggagt tggaataaat agcggtggct
     6601 tgttctatgt tgtctaattt caacgctctt ttgagcagcc aaccaagcag aattaacaag
     6661 ccgtttaata agacggagat taaaaatgcc agatacaagc cgtttagtat ttcggtggtg
     6721 taatctactt gaaaagcagt aatcagcatt gccgggctga taatgtaaag tccgataacc
     6781 gaaatcggat aactgtgctc cgatttgagt aatttagttt taacgatgag gtagccgagc
     6841 agcaccatca gggttaattg tagaatttta tcggctaata aaagggctat ttccattatc
     6901 aattaagagc gagtctctct tctcctgcat aaatggtcgc tttgcctttg cgggcaaaag
     6961 caagtaaggt aaattgattt tcacgagcca tattcactgc catttcagtg gtcgctgaga
     7021 tggcacacaa catttcaatg ccaacggcta agcatttctg caccatttca aagctggcac
     7081 gactggttac aaacacaaat ccaatcggaa aatcagcttt agcataccaa ccgattaatt
     7141 tatccaacgc cacgtgtctg cccacatctt cacgaatggc aagcagtttt ccatccgggg
     7201 taaaaaatgc agcggcgtgg cttgcaccgg tttctttcga taagaattga gcattttcta
     7261 gctgtaataa acaatcctct aaaatcagtg gattgacgtt ctgcaagcgg ttatttttct
     7321 taacaatttt gcaactttga ttaacctgct ctaattgctc tacaccgcaa ataccgcaac
     7381 ctgttctgcc tgccattgag cggcgtttat cttttaatgc aacaaattgg cggctcgata
     7441 tttcaagctg aatttctact ccattttctt gttcaattac atctaaacca tataattccg
     7501 atggggcatt taaaatccct tccgccaatg agaatcctaa agcgaagtcc tccaaattag
     7561 ccggtgttgc catcattaca gtatgagaaa taccgttata taccaaagca accggcactt
     7621 ctgaaattaa attttcttca tcatcttttt gtttaatact attagttgat aatgataa
//
LOCUS       DANLZD010000122         7589 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.122, whole genome shotgun sequence.
ACCESSION   DANLZD010000122 DANLZD010000000
VERSION     DANLZD010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7589)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7589)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7589
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.122"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            4..747
                     /locus_tag="PXE26_002011"
     CDS             4..747
                     /locus_tag="PXE26_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL5594570.1"
                     /translation="MFEFIKLITAMILPPFNIILLWLLALILFSLGYKYAAYFFALLG
                     ILILYIFSIPYTSQKLGDSLVEAEPFTIEKYKNAQAIVVLGGGLRDSQELFGKLAITG
                     IPLERMRYAAYLHKETGLPILATGSSPNGTSEAKVMADEFKMFFNIETKWLENKAKTT
                     KENAIFSREILEKENIHKIILVTNQWHMKRAEMLFSQQGFEVMSASVGSGDTPDHYKL
                     NFMHFIPQAGAMNSNMLALKEWIGYWKEK"
     gene            complement(824..3022)
                     /gene="priA"
                     /locus_tag="PXE26_002012"
     CDS             complement(824..3022)
                     /gene="priA"
                     /locus_tag="PXE26_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HDL5594571.1"
                     /translation="MALNVPLHRYFDYLLPPAFNACQGGRVVVPFGRQTKIGIVVDFP
                     QTSDVPTEKLKPIKAALDSSPIFDSEMWQLLNWAARYYHAPIGEVLTGALPIKLRNGD
                     STERVQPNYFVVTEQGRKSLIIGENKKAKKQVERLTELAECAKYFEKPTACSPSAWKG
                     LLEKGYIEKIDVPFMAQAWQDSLGEFPLVNTNNRLILNKQQTLVVSRLNAQTTFASFL
                     LNGVTGSGKTEVYLQLIETVLKREEQVLLLVPEIGLTPQTVQRFKARFNVEIDVLHSN
                     MNETERLNAWLRAKNGESAIVIGTRSALFTQFQKLGVIILDEEHDSSFKQQDGWRYHA
                     RDLAVVRAKNANIPIVLGSATPSLESLHNVQNGKFIELTLTARAGNAQLANQQIIDLK
                     TQRVTAGLSERLLSMMKTQLEQGNQVMLFLNRRGFAPVLLCHECGWVCECEACNKPFT
                     YHQKQKVLRCHHCATQRVIPRQCGHCGSTHLITTGVGTEQLEQVLNQQFPHYQVTRID
                     RDSTARKGALENHLTAIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFR
                     AEEKLAQLYIQVAGRAGRAEKKGEVVLQTHYPDHPLLKTLLEQGYRAFADEALKMRQL
                     MSLPPFSSQVLFKATGKDNQQTLQLLEQLADYFSQKIQQQNGQGFQLPPPFSAPMAKK
                     AGHYRWLLLIQHPLRGALQQLLDAFDQERESLNIPNNIRLNIDIDPQEIS"
     gene            complement(3034..3646)
                     /locus_tag="PXE26_002013"
                     /pseudo
     CDS             complement(3034..3646)
                     /locus_tag="PXE26_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818858.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
     gene            complement(3639..4538)
                     /gene="rarD"
                     /locus_tag="PXE26_002014"
     CDS             complement(3639..4538)
                     /gene="rarD"
                     /locus_tag="PXE26_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL5594572.1"
                     /translation="MLKGILLSLSASVLFGCMYYLAIFLKPLAGVSIFGIRMLVTIPF
                     LFLALYLFKKQNEFWVFLQRLKQEPYLLLVILITASIVGGQMWLFLWAPNSGKAIEVS
                     MGYLLMPIIMVAFGKVVYKETLSLNKWLAIVVAFIGVASNILFTGKISIASLFVCTGY
                     PIYFYLRRKFGLSHLHSFVVEILYLLPVACYFISQTDMQYVETQNLNIYYFIALLGLI
                     SGTALISYTLASTILPFNLLGLLGYVEPLLMLVVSFLIGERLANESYLLMICLLISIS
                     FLVLDGMFALRQQRKRKLSVNNE"
     gene            complement(4765..5982)
                     /locus_tag="PXE26_002015"
     CDS             complement(4765..5982)
                     /locus_tag="PXE26_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HDL5594573.1"
                     /translation="MDRFPKSDKLAQVRYDIRGPIHKEALRLEEEGHKILKLNIGNPA
                     PFGFEAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIVQYYQSKGMRGMDVNDVYIGN
                     GVSELITMSMQALLNDGDEILIPMPDYPLWTAASTLAGGKAVHYLCDEENEWFPDLED
                     IKSKITPRTKGILVINPNNPTGAVYSRQILLEIAELARQHNLIIFADEIYEKIVYDGA
                     VHHHIAALAPDVLTVTYNGLSKAYRVAGFRQGWMVLSGPKHQAKGFIEGLDMLSSMRL
                     CANTPMQHAIQTALGGYQSINEFVLPGGRLLEQRNKMHELLVQIPGISCVKAKGALYM
                     FPKIDTEMYGIKDDQKFIYDLLRQEKVLLVQGSGFNWKKPDHFRVVTLPYAHQIEEAI
                     GRLANFLKTYRQD"
     gene            6170..7474
                     /locus_tag="PXE26_002016"
     CDS             6170..7474
                     /locus_tag="PXE26_002016"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase"
                     /protein_id="HDL5594574.1"
                     /translation="MLIFHQLKQELTKSYSKVGREQGLVAIQASMPLLEANIPLLGWL
                     KTQKTSYPHFFLQYRDTDQTIATIGTLRQFYTLEAAQSFIQQHHFPLIGGLQFEGNTQ
                     FILPQFSLVKNQQNLTACFYFDSDNFEQQAVIFEQFLANFSQITELGLTDNPLVSMSA
                     TSHFEQWKANIEKAIVSIEQGDFQKVVLANAMRLHFEQPICAYSLLAQSQKTNLGCYH
                     FLWAESADVAFLGSTPERLYQRQGLHFSTEALAGTAAVTTSEVQTELNAQWLLSDPKN
                     IYENQLVVDDIENQLKDCVTEFAVSEAKIKRLHNVQHLRRQIQATLKPDTSDSDCLSK
                     IHPTAAVAGLPRQKAKGFITENEPFTRHWYAGTLGVMGNEEAEFCVTLRSALISQNSI
                     TLYAGAGIVSGSDPQSEWQEIKRKAQGMAKLLDVDLVTKGEL"
BASE COUNT         2296 a         1664 c         1489 g         2140 t
ORIGIN      
        1 tctatgttcg agttcattaa actgatcacc gcaatgatcc tcccgccatt taatattatt
       61 ttgctgtggt tgttagcatt aatcctcttt tctttaggct ataaatacgc tgcttacttc
      121 tttgccttgt taggtattct gattttatat atcttcagca ttccctatac ttcacagaaa
      181 ttaggggatt cattagtcga agcagagcca tttaccatag agaaatataa aaatgctcaa
      241 gcgattgtgg tgctaggtgg cgggctacga gacagccaag agttattcgg caaactggca
      301 attaccggta ttccgctgga aagaatgcgt tatgccgctt atctgcataa agaaaccggc
      361 ttaccgattt tagcgaccgg aagcagccca aatgggactt ctgaggcaaa ggttatggca
      421 gatgaattta aaatgttctt caatattgag accaaatggc tggaaaataa ggcgaaaacc
      481 accaaagaaa atgcgatttt cagccgtgag attttagaaa aagagaatat tcataaaatc
      541 attcttgtta ccaaccaatg gcatatgaaa cgggctgaaa tgctgtttag ccaacaagga
      601 tttgaggtga tgtctgccag cgtcggttct ggcgatacgc ccgatcatta caaactcaac
      661 tttatgcact ttattccgca agccggtgca atgaatagca atatgctggc attaaaagag
      721 tggattggtt attggaaaga gaaataaccg aagataaata gcagcaaggc aggttttcac
      781 ctgccttctt tttgcaaaaa atcagtcaaa aacaaccgct tgtctaacta atctcttgtg
      841 ggtcaatgtc gatattcagc ctgatattat tcggaatgtt taaactttcc ctttcttgat
      901 caaaggcatc gagtagctgt tgtaatgctc ctcggagagg gtgttgaatc agcaataacc
      961 agcggtaatg tcctgctttc ttcgccattg gggctgaaaa tggtggaggg agctggaagc
     1021 cttgcccgtt ttgttgctgg attttttggc taaaataatc tgctaattgc tcaagcagct
     1081 gtaaggtttg ttgattatct ttgccggtcg ctttgaacaa aacttgcgag gaaaatggtg
     1141 gcaaactcat taattgcctc atttttaacg cctcatcagc aaaagctcgg tagccttgtt
     1201 ccagcaaggt tttaagcagt gggtgatcag ggtaatgggt ttgtagcacc acttcgcctt
     1261 ttttctccgc tcgccctgct ctgcctgcca cctgtatgta aagctgtgct aatttttctt
     1321 ccgcacgaaa atcagttgaa aataacgctg aatccacatt aacaatcgcc accaacgtca
     1381 cattcgggaa atgatgccct tttgccaaca tttgcgtacc aatcaaaatt tggcttttgc
     1441 cctctcgaat agcggtcaaa tggttttcca atgcaccttt gcgagcggta gaatctctgt
     1501 ctatacgagt cacttggtaa tgagggaatt gctgatttag cacctgctca agttgttctg
     1561 tgccgacacc ggtagttatt aaatgggttg aaccacaatg tccgcattgg cggggaatta
     1621 ccctttgggt ggcacaatga tggcaacgca acactttttg cttttggtgg taagtaaaag
     1681 gcttattaca cgcctcgcac tcacaaaccc aaccgcattc gtgacaaagt aataccgggg
     1741 caaagccacg gcgatttaaa aacagcatca cttgattgcc ttgctctaac tgggttttca
     1801 tcattgaaag caagcgctcc gacaaaccgg cagttacccg ttgcgttttt aaatcaataa
     1861 tctgctgatt ggcaagttgt gcattgccgg cccgagcggt tagtgtcagt tcaataaatt
     1921 tcccgttttg cacattgtgc aaactttcaa gacttggcgt tgccgagccc agcacaatcg
     1981 gaatatttgc atttttcgcc ctaaccaccg ccaaatcccg tgcgtggtaa cgccaaccgt
     2041 cttgttgctt aaacgagcta tcgtgttctt catccaagat aatcacgccc aatttttgaa
     2101 actgggtaaa taaagcagag cgagtgccga ttacaatcgc actttctcca tttttcgccc
     2161 gcaaccacgc atttaaccgc tcagtttcgt tcatattcga gtgcaatacg tcaatttcaa
     2221 cgttaaagcg agctttaaag cgttgtaccg tttgcggtgt tagcccgatt tcaggcacaa
     2281 gcagcagcac ttgttcctct cgcttaagca ccgtttcaat taactgcaaa tacacttcgg
     2341 ttttgcccga gcctgttacg ccattgagta aaaagctcgc aaaagtggtt tgtgcattta
     2401 aacggctgac cactaaggtt tgttgtttat ttaagatcag ccgattgtta gtatttacta
     2461 acggaaattc acctagtgag tcttgccacg cttgtgccat aaacggcaca tcaattttct
     2521 cgatataccc tttttcgagt aagcctttcc aagcagatgg gctacaagcg gtcggttttt
     2581 caaaatattt tgcacattcg gcaagctcgg ttaaccgttc cacctgcttt ttggcttttt
     2641 tattttcacc gataatcaga gatttccgcc cttgctccgt caccacaaaa taattcggtt
     2701 gaactcgctc agtggaatcg ccattgcgta attttatcgg taaggctccg gttagcactt
     2761 caccaatcgg ggcgtggtaa taacgagccg cccagttcag cagttgccac atttctgagt
     2821 caaaaatcgg gctagaatcc aacgctgctt taatcggttt gagtttttcg gttggcacat
     2881 cactagtttg cgggaaatcg accacaatgc cgattttggt ctggcgacca aaaggcacaa
     2941 ccacccgccc gccttggcag gcattgaatg ccggcggtag caaataatca aaataacgat
     3001 gtaacggcac attcagtgcc actctgatta atctcacttc tctaaaccaa ttttgattgc
     3061 aagcccgata aatatcgagc cgcagatttt atttaaccaa tttccaaagg tttgattatg
     3121 ccgtaaaaaa cgcccaacag gtgcagcggc taagactaaa atacttaccc aaataatgct
     3181 ggtggataaa aacgttagcc ccaacagcat aaaaggtatt ttccaaatta ctggatacaa
     3241 actgcggcaa taacgccaag aaaaagagca atactttcgg gtttaataga ttggtaatca
     3301 acccttgacg gaatatcttc catagaggaa gtttgtctag attgattttc tctaacacca
     3361 acggctctcg ccacatttta atgccgagat agcagagata aattgcccct gcgtatttca
     3421 gaaaattaaa taaagtgggc gaatgtgcca caatgcctgc aagcccgagt gaaaccgcaa
     3481 gaatatggca taaaatgcct gctagaatgc cgaatgaaga cattaagccc gactttttcc
     3541 cctcagcaat agtgcgagtt aaaatataga tagtatccga acccggtgta agatttagca
     3601 gaatacaagc ggtcaaaaat ccccaataat ttacaatatc actcattatt cacactcaat
     3661 ttacgtttac gctgctgacg aagagcaaac ataccatcta atactaaaaa tgaaatggag
     3721 atcaacaagc aaatcatcaa caagtaagat tcatttgcta acctttcgcc aattaagaaa
     3781 gacaccacca acatcaatag tggctcaaca tagcctaata aaccaagcaa attaaagggt
     3841 aaaatcgtgc tggctagcgt atagctgata agtgcagtgc cactaattaa acccagtaat
     3901 gcaataaaat agtaaatatt gaggttttgt gtttcgacat attgcatatc ggtttgagag
     3961 ataaaataac aagctacagg gagcaaatat aaaatttcta ccacaaagct atgtaaatgg
     4021 cttaagccaa actttcggcg aaggtaaaaa tagattgggt aacctgtgca aacaaataaa
     4081 cttgctatcg aaatttttcc cgtaaacaaa atattactcg ctacaccaat gaaagcaacc
     4141 acaatcgcca accatttatt caaggaaagc gtttctttat aaaccacttt gccaaatgcc
     4201 accataataa tcggcattaa tagatagccc attgaaacct caatcgcttt tccgctattg
     4261 ggagcccata aaaacagcca catctgcccg cccacaatag atgccgtgat taaaataacc
     4321 agcaataaat aaggctcttg ctttaggcgt tgaagaaata cccaaaactc attttgtttt
     4381 ttaaataagt ataaagcaag gaaaagaaaa ggaatcgtaa ccagcatacg aatgccgaaa
     4441 atgctcacac ctgccagcgg ttttagaaag atcgccaaat agtacataca gccgaataac
     4501 actgaggctg aaagagataa aagaatgcct tttaacatag tgataagaaa gtaattattt
     4561 tttaattttt caaatctccc ctacccctct tttctaaaga ggattgtcga gttctaaata
     4621 aatgaataat gttcggaggt aggggcgggt ccagtgcccg cccgcaaatt aatatcgtta
     4681 gcggacaggc acaggacctg tccctactga tattatagaa cttacaaccc tgcttttata
     4741 aagtggggta aagggagatt cgacttagtc ttgacgatag gttttcaaga aattcgcaag
     4801 gcgaccaatc gcttcttcaa tttgatgtgc ataaggcaaa gttaccacac ggaagtgatc
     4861 cggttttttc cagttaaaac cggaaccttg cactaatagc actttttctt gtcgcaacaa
     4921 atcgtagatg aatttttggt catctttaat gccgtacatt tcggtatcaa ttttcgggaa
     4981 catatataac gcccctttcg cttttacaca gctaataccc ggaatttgta ccaataattc
     5041 gtgcatttta tttcgttgtt ccagcaaacg accgcccggc aacacaaatt cattgatact
     5101 ttgataacca cctaatgcgg tttgaatggc gtgttgcatc ggcgtattgg cacataaacg
     5161 catagaagag agcatatcca acccttcaat aaaacctttg gcttgatgct tcggaccgct
     5221 cagcaccatc cagccctgac ggaaaccggc aacacgatac gccttggata aaccgttata
     5281 agttacggtt aatacgtccg gtgcaagagc agcaatatgg tgatgtaccg caccatcata
     5341 gacaattttt tcataaattt cgtcagcaaa aataattaag ttatgctgac gggcaagttc
     5401 tgcaatttcc agcaaaattt gacggctata cactgctccg gtcgggttat tcgggttgat
     5461 aaccaaaatc cctttagtgc gaggcgtgat tttcgattta atatcttcaa gatcagggaa
     5521 ccactcattt tcttcatcgc acaggtaatg cactgcttta ccaccggcta gggttgaagc
     5581 tgctgtccat aacggataat caggcattgg aattagaatt tcatcgccat catttaataa
     5641 cgcctgcatc gacattgtaa tcagttcaga tacgccgttg ccgatgtaaa catcgtttac
     5701 atccatacca cgcatacctt ttgattgata atattgcaca atcgctttgc gggcagaata
     5761 caaacctttt gaatcacaat agccttgtgc ggttggaaga ttacgaatca catccactaa
     5821 aatttcatcg ggtgcttcaa agccaaaagg ggctgggtta ccgatattta attttaaaat
     5881 tttatgccct tcttcttcta agcgaagtgc ctctttatga attggcccac ggatatcgta
     5941 acgaacctga gctaacttat ctgatttggg aaaacgatcc attgtaaact tcctataatg
     6001 tattatctaa ttgtagtctc atcccgctgt tcaaaaaatc ggtaattcgg aatgaatttg
     6061 taaacattac tctaatttgg gaggaaaaaa aagaggaaat acgttaaaat ggagaccttt
     6121 ttttcaatca gctaaaaaca agcggtttct ttttctgatt tttttgcaaa tgcttatttt
     6181 tcatcaatta aaacaagaac ttacaaaaag ttactcaaaa gtgggaagag agcaaggatt
     6241 ggtcgccatt caagcctcta tgccgctatt ggaggcaaat attccgctac tcggttggtt
     6301 gaaaacacaa aaaacaagct accctcactt ttttctgcaa tatcgtgata cagatcagac
     6361 cattgccacc attggcacac ttcgccaatt ttatacgcta gaagctgcac aatcttttat
     6421 tcaacaacat catttcccgt taatcggcgg gcttcaattt gaaggcaata cgcaatttat
     6481 tttgcctcaa ttttcattgg taaaaaatca gcaaaattta accgcttgct tctattttga
     6541 tagtgataac tttgaacaac aagcggttat ttttgaacaa tttcttgcaa atttcagcca
     6601 aattaccgaa ttaggactaa cggataatcc gctcgtttca atgagtgcca ccagccattt
     6661 tgagcaatgg aaagccaata ttgaaaaagc gattgtttct attgagcagg gcgattttca
     6721 aaaagtggta ttggcaaatg cgatgagact tcattttgag caacccattt gtgcttacag
     6781 cttgctggca caaagccaaa aaacaaattt aggttgttac cactttttat gggcggaaag
     6841 tgctgatgtt gcctttcttg gctcaacccc tgagcggcta tatcaacgcc aagggctaca
     6901 cttttctacc gaagccctcg ccggcaccgc tgcggttacc accagtgaag tgcaaaccga
     6961 actcaatgca caatggctgt taagtgatcc caaaaatatc tatgaaaatc aattagtggt
     7021 tgatgacatt gaaaaccaac tcaaagattg cgtgaccgaa tttgcagtat ccgaggcaaa
     7081 aattaagcgt ttgcataatg tgcaacacct acgccgccaa attcaagcaa cgctcaaacc
     7141 ggacacctca gattcagatt gcttaagcaa aatccaccca actgcggcag ttgcagggct
     7201 tccccgccaa aaagcaaagg gttttattac cgaaaatgag ccttttaccc gccattggta
     7261 tgcaggtaca ttaggcgtaa tgggcaacga ggaagccgaa ttttgcgtaa cactccgttc
     7321 tgcattaatt tcacaaaatt caattacgct ttatgccggt gccggcattg tgtcaggctc
     7381 agatccacaa tcggaatggc aagaaattaa acgtaaggca caaggaatgg caaaactgtt
     7441 ggatgttgat ttagtaacaa aaggggaact gtaagctagg ctttcagaac ttaatctctt
     7501 aattatttct ttctatattt tcatttccaa cttcccaaca aaatatatta ttgccaccaa
     7561 attagtagtg aatattccat aattaaaaa
//
LOCUS       DANLZD010000123         7577 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.123, whole genome shotgun sequence.
ACCESSION   DANLZD010000123 DANLZD010000000
VERSION     DANLZD010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7577)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7577)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7577
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.123"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            234..902
                     /locus_tag="PXE26_002017"
     CDS             234..902
                     /locus_tag="PXE26_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5594575.1"
                     /translation="MAHNGSGKSTLMRLLSGDITPTSGSILVDGLPLHQLSTKEAAKH
                     IAYLPQRLPEAADFLVQELVALGRFPYQKWLQKPTEFDVQIVEQAMESTSVTQFAKQP
                     VNSLSGGEKQRVWLAMCLAQQTPYLLLDEPLAALDIVYQVEVMQLIRKLVNEQGLTVI
                     IIIHDINLASQFCDEIIALKQGELCIQGSVDEIMQEQKLLEIFGLKLHLFNHPAGLHK
                     VAVL"
     gene            899..1780
                     /locus_tag="PXE26_002018"
     CDS             899..1780
                     /locus_tag="PXE26_002018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5594576.1"
                     /translation="MMFRQYKRFIFLFILQISTAFAQPNIFTPDWSIASALTEMGNPP
                     IAMGDKRIYPLWSHRPIQPNSVLDIGARYQPNRELLAQLPVELVLSNFFYAHLASVYP
                     KEIPQIDVLFDGGNTEPQQHWHTYQKATRMIGTEIKNPNAAEAYLTKTEQTLAQWGKE
                     ILNSNPDIDYYSVVQFGSPRELRIYASNSMFRVAFDLMGLKQADLGVGDRWGNKLIPV
                     SDLAKLPERTCLIVISPFSKMTQADLENSYIWQRLGFGKNRCMKVLPPVWLFGGADSI
                     SHFAEFLHNAMTQGEKE"
     gene            1780..2595
                     /locus_tag="PXE26_002019"
     CDS             1780..2595
                     /locus_tag="PXE26_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDL5594577.1"
                     /translation="MKSSFLLIGCILLSLVTAVIRLNMVWEWEWQLLLINVDLLPINQ
                     AAVKAALLPEMTTSFLAGGLLAIASSGLQHIVRNNLASDSTLAVSSGAQLALMIAVIF
                     FPAAELFSSFWIALLGSLAAIVLVLFIAKASKLNPLTLILGGLIVNILFGAIASLLTL
                     FYFDFLFGVMVWGSGSLLQDGWATSITLAITVVVAFFIFVLLSRPLTILSLDDEQARR
                     LGAPVNLLRYLVIFVCAAITALVVSKIGVIGFIGFAVQVWLILPKYDIYYFAS"
     gene            2592..3728
                     /locus_tag="PXE26_002020"
     CDS             2592..3728
                     /locus_tag="PXE26_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5594578.1"
                     /translation="MIAFLAGGFLLFFTNNLIGIVSRIYDTLLPVGAFTATLGAPLLI
                     FLVLRQRKAQFEASNTAYFPVKRLNSWKLPILLLCAGVILFCLLQIIAPTMNGWAISI
                     DENLMSSYRLPRSLSAIATGAMLAVSGSLLQILTRNPMASPEVLGVSSGATIAAVLSF
                     LLFPTLSSISFLLFGVLGSLTVLALIMWLSRKLQPSALMITGVAIGALVSGLMAIIQL
                     SGSPRLTAVISWLSGSTYYANPNTVWILLSVAILLISATLLFIKPLRLISLGETVSYH
                     LGLEVKKVQMIVLLLIALMSAASTLAVGPMSFIGLMTPHLAKNLGAITPEKQIPISAL
                     LGAMLMLIADWLGRYLIFPYEIGAGIIASILGGIYFLLLLKQHK"
     gene            3756..4154
                     /locus_tag="PXE26_002021"
     CDS             3756..4154
                     /locus_tag="PXE26_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL5594579.1"
                     /translation="MNTLSKAIKLALYSSGIGFISTAYAETVTHLDTVEVSAETPNAS
                     SEETGRYAQKKAKGSNGMALSAKDTPQSVTAVTHQQIRDQNLNTIAKALEATHGVSVS
                     LLDRGRYSFSARGFGIDKVKVDGMDLKVSK"
     gene            4189..5892
                     /locus_tag="PXE26_002022"
     CDS             4189..5892
                     /locus_tag="PXE26_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HDL5594580.1"
                     /translation="MLYDRVEVVRGATGLTTGAGDPSASVNLVRKRANSISRYTILEA
                     GIGRYADFNTMIDHSQALNNSGSVRGRFIAEHKNGNTFIKNEKERYTTLYGNIEADLT
                     DTTKLGLGVSYQKEKRDAALWGGLPAFYSDGGETNWSRSKNASPEWAYWDNESVNYFA
                     DITQKLGEKWELALKGNYRVGKHNSELFYFSGSSLNRQDGLGWSPWPGKFKNDNTQSN
                     VQLDLTGSFSAWGLEHDAAIGIQYNRAHRNSYAADNSTFDGAFDFNNWNGIYARPNWG
                     SMSEKYYQNLKEFGVYVSTRLHLTDRLSMLLGSRISSYRTEGTFYGSTQNFHANDVWT
                     PYAGLTFDINPQNTVYVSYTDIFKPQSQVDINNKLLSPVTGETYEAGWKGSYFNDNLQ
                     TQISVFETRQDNLAQSAGINPNTLLAYYTASKGAKVRGFEVEASGNVTEKLKLSAGYT
                     QWKGDDASGNPINTTQPRKQFKLFATYDMNRLVQGLTVGAGVNWQSRIYTKHATYGEY
                     GQKAYTLVNLMARYQFNDNFSAQLNIDNLFDKKYRNALSFSQYSYGEPFYTRLNLRYE
                     F"
     gene            6004..6648
                     /gene="adk"
                     /locus_tag="PXE26_002023"
     CDS             6004..6648
                     /gene="adk"
                     /locus_tag="PXE26_002023"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HDL5594581.1"
                     /translation="MKVILLGAPGAGKGTQAQFIMNKFGIPQISTGDMFRAAIKESTE
                     LGKQAKALMDEGKLVPDELTVALVKDRIAQPDCANGFLLDGFPRTIPQADALKESGVK
                     IDLVLEFDVADEVIVERMSGRRVHQPSGRTYHVVYNPPKVEGKDDVTGEDLIIRQDDK
                     PETVLERLAIYHKQTKPLIAYYTAEAEAGNTRYERLDGTKPVEEVSAELAKILS"
     gene            complement(6710..7525)
                     /locus_tag="PXE26_002024"
     CDS             complement(6710..7525)
                     /locus_tag="PXE26_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDL5594582.1"
                     /translation="MSYKVVFSLLFSLFLSTANANWTKINDVNYTWGPFNIYHITLFT
                     ESGTYVEGTRPLMLTLQYKKPWEGRDFAVSLARTWNNLGIKLPEKELDEVITHLRKTF
                     PDIKPEDTLHYIALEDRGYFILNDKVVSDVFNKAFNDAIVAIWLDPKMDISHQLLDPS
                     YKPRAEAESIKPQVEERVAENLQEPIVNTEVSKELKADSQAVEQAPNKIDIPVADKTQ
                     ASVVNEATQPVENKDKKEPEKLEEKPKEMKIENPEVFISPIYDDILMLTKYCV"
BASE COUNT         2227 a         1488 c         1486 g         2376 t
ORIGIN      
        1 taaaactaaa tgatattgac tttcatttat aataaaaata tatttagcac cgttttcata
       61 atagattttc atctactcat tttcattttg attgatttgg tggggtaatc ccaccttttt
      121 tatgctctta aaacacaaca ctatgattca aataaattcc attagctact ctgttgaaca
      181 aaaccgtaaa ctgctaagca atatttccct caatttaagc aaggggcgtt tatatggcgc
      241 ataacggctc gggtaaatca acgttaatgc gtttactaag cggagatata acgcctacca
      301 gcggttcaat tttagtcgat ggattaccac ttcatcagct ttctaccaaa gaagcggcaa
      361 aacatattgc ctatttacca caacgtttac ctgaagcggc ggatttctta gtgcaggaac
      421 tggttgcttt agggcgattt ccatatcaaa aatggctaca aaaaccaaca gaatttgatg
      481 ttcaaattgt tgagcaagca atggaaagca cctccgttac tcagtttgct aaacagcctg
      541 taaatagtct atcaggcgga gaaaaacaac gagtttggct tgctatgtgc ttagcccaac
      601 aaacacccta tttactgcta gatgagccat tggctgccct tgatattgtt tatcaagttg
      661 aagtaatgca gcttattcgc aagctagtga atgaacaagg tctaactgtc attatcatta
      721 ttcacgatat taatcttgcc tcccaatttt gtgatgaaat tattgcgtta aagcaaggcg
      781 aactctgtat tcaaggttct gttgatgaaa ttatgcaaga acagaaatta cttgagatct
      841 tcgggctaaa actgcacttg tttaaccacc ctgcaggctt acataaagtg gcggtattat
      901 gatgtttagg caatacaagc ggttcatttt tctctttatt ttgcaaattt ctaccgcatt
      961 tgctcaacct aatattttta caccagattg gtctattgcc tctgccctta ctgaaatggg
     1021 aaatccgccc attgcgatgg gggataagcg aatttatccg ctatggtcgc accgccctat
     1081 tcagcctaat agcgtgttag atattggagc gcgttatcag cctaatcgcg aattattagc
     1141 acagcttcct gttgaattgg tgctatcaaa ctttttctac gctcacttgg cttctgttta
     1201 cccgaaagaa attccacaaa tagacgtgct atttgatggt ggcaatactg aacctcagca
     1261 acattggcat acttaccaaa aagccactcg tatgattgga acagagatta aaaaccctaa
     1321 tgcggcagaa gcatatttaa cgaaaactga acaaacgttg gctcaatggg ggaaagaaat
     1381 ccttaacagt aatccagata ttgattacta ctctgttgtt caatttggct ctccgagaga
     1441 gttacgcata tatgcgtcta attcaatgtt ccgtgtagcc tttgatttga tgggcttaaa
     1501 acaagctgat ttaggtgtgg gagatcgctg gggaaataaa cttattcctg tgagtgattt
     1561 agctaaatta cccgaacgca cctgtttaat tgtcatctca cctttttcta aaatgacgca
     1621 agcagattta gaaaatagct acatttggca acgtttagga tttggtaaaa accgttgtat
     1681 gaaagtatta ccgcctgttt ggctctttgg tggggctgat tccatctcgc actttgctga
     1741 gtttttacac aatgcaatga cacaaggaga aaaagagtaa tgaaatcatc attcttattg
     1801 attggctgta ttcttttatc cttagtaaca gctgttatcc gtttaaatat ggtctgggag
     1861 tgggaatggc agttactact cataaatgtt gatttattgc caattaatca agctgcggta
     1921 aaagcagctc ttttacctga aatgacaacg tcatttttag caggcggttt attggctata
     1981 gccagcagtg gcttacaaca tattgtcaga aataatttag cgtcagatag cacacttgcc
     2041 gtcagtagcg gggctcaact tgcattgatg attgcggtta tctttttccc agccgccgag
     2101 cttttttcta gtttctggat tgcgttactt ggctctttag ctgctatcgt actggtttta
     2161 tttattgcta aagcctctaa gctcaatccc cttaccctta ttttaggggg attgattgtt
     2221 aatattttgt ttggagctat tgcctcttta ctgacccttt tctactttga ttttttattt
     2281 ggcgtgatgg tttggggaag tggctcactt ttacaagatg gttgggcaac ttctattacc
     2341 ttagcgataa cggtagtagt tgcatttttt atctttgtct tactctctcg tccactcaca
     2401 attttaagtt tagatgatga acaagctcgc cgcttaggcg cgcctgttaa tttactacgc
     2461 tacttagtta tttttgtttg tgccgccatt acagcattgg ttgtaagcaa aataggtgtg
     2521 attggcttta ttggatttgc agtgcaagtt tggctcattt tgccaaaata cgacatttat
     2581 tacttcgcct cttgattgct tttctagcgg gcggattttt actctttttt accaataatc
     2641 tcatcggcat tgttagcaga atttacgaca ctctactacc tgttggtgca tttaccgcaa
     2701 cactaggcgc accattatta attttcttgg tattacgcca acgtaaagca caatttgaag
     2761 caagcaatac agcatacttc cccgttaaac gcctcaattc gtggaaactg ccaatattgt
     2821 tgttatgcgc tggagttatc ctattttgtc tattacaaat cattgctcca acaatgaatg
     2881 gctgggctat tagcattgat gaaaacctga tgagttccta ccgcttgcct cgtagtctaa
     2941 gtgcgatagc aacaggggca atgcttgcgg taagtggtag cctattacaa atcttaacga
     3001 gaaacccaat ggcaagccct gaagtattag gtgtgagttc aggggcaact attgctgcag
     3061 tactgtcatt cttacttttc ccaacattat ctagcattag cttcttgtta tttggtgtat
     3121 tagggagttt gactgttctc gctcttatta tgtggctctc tcgtaaatta caaccatcag
     3181 cgttaatgat tacaggtgtt gctattggag ctttagtcag tggcttaatg gctattattc
     3241 aactaagcgg cagccctcgt ttaacggcag ttattagttg gctgtctggc tcaacctatt
     3301 acgctaatcc gaatacagtt tggattttat tatctgttgc aatcctactt atcagtgcca
     3361 ctttactgtt tatcaaacct ttacgtttga tctcacttgg cgagaccgtt tcttaccatt
     3421 tagggttaga ggttaaaaaa gtacaaatga ttgtattact tttaattgcc ctaatgagtg
     3481 ccgcctctac acttgcggta gggccaatga gcttcattgg gctaatgacc cctcatttag
     3541 ctaaaaattt aggtgcaatt acaccggaga aacagatccc tatatcggca ttattagggg
     3601 caatgctaat gctcattgcc gattggctcg ggcgttatct aattttccct tatgagattg
     3661 gggcaggcat tattgcctct attctcgggg gtatctattt cttactgtta ctcaaacaac
     3721 ataaataatt ttttattcat tacttaggag aaattatgaa cacgctatct aaagcgataa
     3781 aacttgcctt atacagttct ggtatagggt ttatctcaac agcttacgct gaaacagtta
     3841 ctcatcttga taccgtagaa gtaagtgccg aaacgccaaa tgcctcatcg gaagaaactg
     3901 gacgttatgc acagaaaaaa gccaaaggct ctaatggaat ggcattgagt gcgaaagaca
     3961 cgccacaaag cgtaacggct gtaacgcatc aacaaatcag agatcaaaat cttaatacga
     4021 ttgccaaagc acttgaagca actcacggtg tttctgtttc tttacttgac agaggacgct
     4081 attctttcag tgctcgtggt tttgggattg ataaagtcaa ggtagatggt atggatctca
     4141 aagtaagtaa ataaccaatg gacaacgggc gaaaatacag gcaacagcgt gttatacgac
     4201 cgagtagaag ttgtgcgtgg tgctacaggc ttaactactg gggcaggcga tccttctgca
     4261 agtgttaatc ttgttcgtaa acgagccaat agcatttccc gttatactat tttagaagct
     4321 ggaatcgggc gttatgctga tttcaataca atgattgacc atagccaagc attgaataat
     4381 tcaggatcag taagaggccg ctttattgca gagcataaaa acggtaatac gttcattaaa
     4441 aatgaaaaag aacgttacac cacgctttat ggcaatattg aagcagactt aactgacact
     4501 accaaacttg ggttaggtgt aagctatcaa aaagaaaaac gtgatgcagc actttggggt
     4561 ggtttacccg cattctatag cgacggtggt gaaactaact ggagcagaag caaaaatgcc
     4621 agtccggaat gggcttactg ggataatgaa tccgtaaact attttgccga tattacacaa
     4681 aaactaggcg aaaaatggga acttgcatta aaaggcaatt accgtgtagg caaacataat
     4741 tcagaacttt tctatttcag cggctcatca cttaatcgcc aagatggatt aggttggtcg
     4801 ccttggccgg gtaaatttaa aaatgataat acacaatcta atgtgcagct tgatcttacc
     4861 ggttcattct ctgcttgggg attagaacac gatgcggcaa tcggtattca atacaatcga
     4921 gcacatcgta attcctacgc tgccgataat agcacctttg acggagcttt cgactttaat
     4981 aattggaatg gcatttatgc tagaccaaac tggggaagta tgtctgaaaa atactaccaa
     5041 aacttaaaag agttcggggt gtatgtttct acccgtttac atcttacaga tagactttct
     5101 atgcttctag gttctcgtat ttcatcgtac cgcacagaag gcactttcta tggttcaaca
     5161 caaaacttcc acgctaacga tgtttggaca ccttatgcag gattaacctt tgatattaat
     5221 ccacaaaata ccgtttatgt aagttatacc gatattttca aaccacaaag tcaagtggac
     5281 atcaataaca aactactctc tcctgttacg ggcgaaacct acgaagcagg ttggaaaggg
     5341 agttatttca atgacaactt gcaaactcaa attagcgtat ttgaaacaag acaagataat
     5401 ctagctcaat ctgccggtat taaccctaat acattattag cctactacac agcctctaaa
     5461 ggtgcgaaag ttcgaggctt tgaagtagaa gcatctggaa atgtaactga aaaattaaaa
     5521 ctcagtgcag gatatactca gtggaaaggc gatgatgctt caggtaaccc aattaacaca
     5581 actcaaccac gcaaacaatt taaactcttt gcaacttacg atatgaaccg tttagtgcaa
     5641 ggtttaacgg taggagcagg tgtaaactgg caaagcagaa tttataccaa acacgctact
     5701 tatggcgaat atggtcaaaa agcttacact ttagtgaatt tgatggctcg ttatcaattt
     5761 aatgacaact tctcagcaca gcttaacatt gataacttat tcgataaaaa atatcgtaac
     5821 gccctcagct ttagccaata tagctacggt gagccattct atacacgctt aaatttacgc
     5881 tatgaattct aattccgtat aacaagcggt caaaaaatta aaaaaatttg caattttagg
     5941 cagtaatcgg taaggttact gcctaagtga ttttattatt tttagtttaa ttgaggtttt
     6001 caaatgaaag tgattttatt aggtgcgccg ggtgcgggca aaggtacgca agctcagttt
     6061 attatgaaca aattcggtat tccgcaaatt tcaaccggcg atatgttccg tgcagcgatt
     6121 aaagaaagca ctgagcttgg taaacaagca aaagcattga tggacgaagg caagttagtg
     6181 ccggatgaat taacggtcgc cttagtaaaa gatcgtattg ctcaaccgga ttgtgctaat
     6241 ggcttcttat tagacggttt cccacgcacc attccgcaag ctgatgcgtt aaaagagtca
     6301 ggtgtaaaaa ttgatttagt gttagagttt gatgtagctg atgaagtcat tgttgagcgt
     6361 atgagtggtc gtcgtgttca ccaaccttca gggcgtactt accacgtggt gtacaatcca
     6421 ccgaaagtgg aaggcaaaga tgatgtgact ggtgaggatt taattatccg ccaagatgac
     6481 aaacctgaaa cggtattaga gcgtttagcg atttaccaca aacaaaccaa accgttaatc
     6541 gcctactaca ccgcagaagc agaagccggc aacactcgtt atgagcgttt agatggaaca
     6601 aaaccagtgg aagaagtaag tgctgagtta gcgaaaattt tatcttaaat ggattattaa
     6661 aatgaacaag cggtaatatt tttcgagaat attaccgctt gttctttgct taaacacaat
     6721 atttggtgag cattaagata tcatcataaa tcggtgaaat aaacacttcc ggattttcaa
     6781 tcttcatctc ctttggtttt tcttctagct tttctggctc tttcttatct ttattctcta
     6841 ccggttgagt cgcttcattt accacactag cttgagtttt atctgctaca ggtatatcta
     6901 ttttgtttgg tgcttgctct actgcttgag aatccgcttt cagctcttta gaaacttcag
     6961 tatttacgat aggttcttgt aagttttccg ctactctttc ctctacttgt ggcttaatac
     7021 tttctgcctc tgctctcggt ttataagatg gatcaagtaa ttgatggcta atatccattt
     7081 tcggatcaag ccaaattgct acaatagcat cattgaaagc tttattaaac acatcagaga
     7141 ctactttatc atttaaaata aaataacctc tatcttctaa tgcaatatag tgcaatgtat
     7201 cttcaggctt aatatctggg aaagtttttc tcaggtgggt aataacctca tctaactctt
     7261 tttcaggtag cttaatgcct aaattattcc aagttcttgc taaagaaacc gcaaaatcac
     7321 gcccctccca cggtttttta tattgtagag taagcattaa aggacgtgta ccttctacat
     7381 aagtaccgct ctcagtaaaa agcgtaatat ggtaaatatt aaatggcccc cacgtataat
     7441 tcacatcatt aatttttgtc caatttgcat ttgctgttga taaaaataga gaaaacaaca
     7501 gcgaaaagac cactttatag ctcattattt ttgtgtcctt aaatctaaaa ttcctactca
     7561 ttattatagc cttaaat
//
LOCUS       DANLZD010000124         7520 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.124, whole genome shotgun sequence.
ACCESSION   DANLZD010000124 DANLZD010000000
VERSION     DANLZD010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7520
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.124"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            66..485
                     /locus_tag="PXE26_002025"
     CDS             66..485
                     /locus_tag="PXE26_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005704641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS sensor domain-containing protein"
                     /protein_id="HDL5594583.1"
                     /translation="MVPSNEAVLKAVHDTLVISTTDLQGVITYANDLFCKLTGFTREE
                     LIGQPHNIVRHPAVPKEVYKDMWDTIQAGKIWTGIVPNCGKGGVVYVVDTTVQPMFDE
                     TGKITGYISVRRVINDLMTNFEAVESAKEIFDDFYGE"
     gene            556..2112
                     /locus_tag="PXE26_002026"
     CDS             556..2112
                     /locus_tag="PXE26_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite reductase flavoprotein subunit alpha"
                     /protein_id="HDL5594584.1"
                     /translation="MSLIPHIHIAYGSESGNAEKLAQQLAIQPFLLPYSPTLSTLNET
                     DLSQLSAESLLLIVTSSFGDGEPPENADEFAEKLENLTACNLQYAIFGLGDITYDKFC
                     GYSKQLDSLLQQKQAKAVIARVDADLNYQEIFKQWLPLVEQALHSTNKETIQHSLSVQ
                     AYGEEMAYQAEVLEIKHLANSSPAVYHIRLSLKESGIFYQAGDLIYVKVQQPDRLLNE
                     YAEWFNDQNAVALLRHKELRLLSKNVLRDIQKICGSNELKDLTKISNKKALEQYVYGR
                     DLLDVLRDFDPNKSVTLADLEPILSNLAARAYSISSCGKTHPDYVDLCIRHVSYHLNG
                     RDYQGTASGYLSELQAGDFVSIFANANPNFRLPETLTAPVVMIGSGTGIAPHIAFLQA
                     LEQQYQGVESYLFFGERYRDKDFLYQTELENYLAKGTLTQLFTAFSRDQAEKFYVQDA
                     LSQQAELVWHLIQQGAYFYICGSKAMSKAIDAELIKIADQIGGDPYIDDFNNIIAKLV
                     AEGRLMRDVY"
     gene            complement(2170..2427)
                     /gene="rpsQ"
                     /locus_tag="PXE26_002027"
     CDS             complement(2170..2427)
                     /gene="rpsQ"
                     /locus_tag="PXE26_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005759643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HDL5594585.1"
                     /translation="MTDKIRTVQGKVVSDKMDKSFVVAIERTVKHPLYGKFIRRTTKL
                     HVHDENNEAKLGDVVEIKECRPISKTKSWTLVRVVEKAVVA"
     gene            complement(2427..2618)
                     /gene="rpmC"
                     /locus_tag="PXE26_002028"
     CDS             complement(2427..2618)
                     /gene="rpmC"
                     /locus_tag="PXE26_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HDL5594586.1"
                     /translation="MKAQELRNKSVEELNGELVNLLGEQFKLRMQAATGQLQQTHQLK
                     QVRRSIAQVKTVLTEKAGE"
     gene            complement(2618..3028)
                     /gene="rplP"
                     /locus_tag="PXE26_002029"
     CDS             complement(2618..3028)
                     /gene="rplP"
                     /locus_tag="PXE26_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HDL5594587.1"
                     /translation="MLQPKRTKFRKVHKGRNRGIAGGTEVSFGSFGLKAIGRGRLTAR
                     QIEAARRAMSRAVKRQGKIWIRVFPDKPITEKPLEVRMGKGKGNVEYWVALIQPGKVL
                     YEMDGVSEEVARNAFALAAAKLPFKTTFVTKTVM"
     gene            complement(3042..3749)
                     /gene="rpsC"
                     /locus_tag="PXE26_002030"
     CDS             complement(3042..3749)
                     /gene="rpsC"
                     /locus_tag="PXE26_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HDL5594588.1"
                     /translation="MGQKVHPNGIRLGIVKPWNSTWFANTQDFADNLDGDFKVRKFLN
                     KELANASVSRITIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGVPAQIN
                     IAEVKKPELDAKLVADSIASQLERRVMFRRAMKKAVQNAMKLGAKGIKVEVSGRLGGA
                     EIARSEWYREGRVPLHTLRADIDYSTAEAHTTYGVIGVKVWIFKGEILGGMAAVIESE
                     KEPAAQPKKAPRGKGRK"
     gene            complement(3769..4101)
                     /gene="rplV"
                     /locus_tag="PXE26_002031"
     CDS             complement(3769..4101)
                     /gene="rplV"
                     /locus_tag="PXE26_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HDL5594589.1"
                     /translation="METIAKHRYARTSAQKARLVADLIRGKKVSVALEILTFTNKKAA
                     TLVKKVLESAIANAEHNDGADVDDLKVAKIFVDEGPSMKRVMPRAKGRADRILKRTSH
                     ITVVVSDR"
     gene            complement(4112..4387)
                     /gene="rpsS"
                     /locus_tag="PXE26_002032"
     CDS             complement(4112..4387)
                     /gene="rpsS"
                     /locus_tag="PXE26_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HDL5594590.1"
                     /translation="MPRSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSM
                     IGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHAADKKAKK"
     gene            complement(4418..5239)
                     /gene="rplB"
                     /locus_tag="PXE26_002033"
     CDS             complement(4418..5239)
                     /gene="rplB"
                     /locus_tag="PXE26_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HDL5594591.1"
                     /translation="MAIVKCKPTSAGRRHVVKVVNAELHKGKPFAALLDTKSKTGGRN
                     NLGRITTRHIGGGHKQHYRLIDFKRNKLDIPGVVERLEYDPNRSANIALVLYKDGERR
                     YILAPKGLTAGDQIQAGASAPIKVGNALPMRNIPVGTTVHNVELKPGKGGQIARSAGA
                     YVQIIAREGNYVTLRLRSGEMRKVLAECTATIGEVGNSEHMLRVLGKAGANRWRGIRP
                     TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRHNKRTDKFIVRRRGK"
     gene            complement(5258..5563)
                     /gene="rplW"
                     /locus_tag="PXE26_002034"
     CDS             complement(5258..5563)
                     /gene="rplW"
                     /locus_tag="PXE26_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HDL5594592.1"
                     /translation="MIQQERLLNVLKAPHISEKATNNAEKGNTIVFKVALDANKVEIA
                     NAVEELFEVKVDSVRTVVVKGKTKRRGAKVGRRSDWKKAYVTLQEGQSLDFVEGAAE"
     gene            complement(5560..6162)
                     /gene="rplD"
                     /locus_tag="PXE26_002035"
     CDS             complement(5560..6162)
                     /gene="rplD"
                     /locus_tag="PXE26_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HDL5594593.1"
                     /translation="MELQVVGANALTVSETTFGREFNEALIHQVVVAYAAGARQGSRA
                     QKTRAEVSGSGKKPWRQKGTGRARSGDIKSPIWRSGSVTFAAKPQDHSQKVNKRMYRG
                     AIKSILSELVRQDRLVVVEKFEIDAPKTKVLAQKLKDMALNDALIITANVDENLFLAA
                     RNLYKVDVRDVQGIDPVSLIAFDKVVVTVDAVKQIEEMLA"
     gene            complement(6178..6807)
                     /gene="rplC"
                     /locus_tag="PXE26_002036"
     CDS             complement(6178..6807)
                     /gene="rplC"
                     /locus_tag="PXE26_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000579825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HDL5594594.1"
                     /translation="MIGLIGRKVGMTRVFTEDGVSIPVTVIEIEANRVTQVKTLENDG
                     YSAIQVTTGSKKASRVTKPEAGHFVKAGVEAGRGLWEFRTTEGEEFTLGQEINVDIFT
                     DVKKVDVTGTSKGKGFQGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKK
                     MAGHLGAERVTVQSLEVVRVDVERKLLLVKGAVPGATNGDVIVKPAVKA"
     gene            complement(6833..7144)
                     /gene="rpsJ"
                     /locus_tag="PXE26_002037"
     CDS             complement(6833..7144)
                     /gene="rpsJ"
                     /locus_tag="PXE26_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HDL5594595.1"
                     /translation="MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPT
                     RKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISL
                     G"
BASE COUNT         2201 a         1591 c         1377 g         2351 t
ORIGIN      
        1 atttatactg ataaacacat aacaaaattc atttatatta atggagattc aacacggctg
       61 aacaaattgt tccttcaaat gaagctgttt taaaagcagt ccacgatact ttagttattt
      121 caacaactga tttacaaggt gttattactt acgctaacga ccttttctgc aaattaaccg
      181 gttttacccg tgaagaatta attggacaac cgcataatat cgtacgccac ccagctgtac
      241 caaaagaagt ttataaagat atgtgggata caatccaagc cggtaaaatc tggacaggta
      301 tcgtaccaaa ctgcggtaaa ggcggtgtag tttatgtggt tgataccacc gttcaaccaa
      361 tgtttgatga aacaggcaaa attacaggct atatcagcgt tcgccgtgta attaatgatt
      421 taatgaccaa ctttgaagca gtagaatcag caaaagaaat ctttgatgac ttctacggtg
      481 aataattaaa aaacaatgat tgcgtgtaaa agatgatctc ttttacacgc aattttttat
      541 tttcgaggag tttgtatgtc tctcattccc catatccaca ttgcttatgg ttcggagtct
      601 ggtaacgcag aaaagcttgc ccaacaatta gctatccaac cctttttact tccctactca
      661 cccacacttt ctacattaaa cgaaaccgat ttaagccaat tatctgccga gagtttattg
      721 cttattgtaa ccagctcctt tggtgatggc gaaccacctg aaaacgccga tgaatttgca
      781 gaaaaattgg aaaatttgac cgcttgtaat ctgcaatatg cgatattcgg gctaggtgat
      841 attacttatg ataaattctg tggctatagc aaacaactag attcattatt acaacaaaaa
      901 caagctaaag ctgtgattgc aagggttgat gccgatttaa actatcaaga aatttttaaa
      961 caatggctac ccctagtgga gcaggcatta cattcaacaa acaaagaaac gatccaacat
     1021 tccctttctg ttcaagctta cggcgaggaa atggcatacc aagcagaagt gttggaaatt
     1081 aagcatttgg caaactcaag ccctgcggtg tatcacattc gtttatcatt aaaagagagc
     1141 ggtattttct atcaagcagg ggatttaatt tatgtcaaag tgcagcaacc agacagacta
     1201 ttaaatgaat atgcagaatg gtttaacgat caaaatgcag ttgcattact acgccataaa
     1261 gaactccgac tactaagtaa aaatgtactg cgtgatattc aaaaaatttg cggcagtaat
     1321 gaactcaaag atttaactaa aatttccaat aaaaaagcat tggaacaata tgtctatggg
     1381 cgggatttat tagacgtatt acgcgatttt gacccaaaca aaagcgtgac attagccgat
     1441 ttagagccaa ttttatctaa cttagccgca cgagcctatt caattagctc ttgcggtaaa
     1501 actcaccctg attatgttga tttatgtatc cgccacgttt cgtatcattt aaacggtaga
     1561 gattatcaag ggactgcaag tgggtattta tccgaattac aagcgggcga ttttgtctcg
     1621 atttttgcaa atgccaatcc gaatttccgt ttacccgaaa cattaaccgc tccggtggtg
     1681 atgattggct caggtactgg cattgctccg catatcgcat ttttacaagc gttagagcag
     1741 caatatcagg gggttgaaag ctatttattc ttcggcgagc gttatcgtga taaagatttt
     1801 ctgtatcaaa cggaactgga aaattactta gcaaaaggca ccttaactca gctgtttact
     1861 gctttttcac gtgatcaggc agagaagttt tatgtgcaag atgccctatc gcaacaagca
     1921 gagttagttt ggcatttaat tcagcaaggg gcttatttct atatttgtgg tagcaaagca
     1981 atgagtaaag caatagatgc ggaactcatc aaaattgcag atcaaattgg aggcgatcct
     2041 tatattgatg atttcaataa tattattgca aaattggtcg cagaaggccg attaatgcga
     2101 gatgtatatt agcaaatgaa aaaaactaaa aacccagcaa aagctgggtt tttatttaat
     2161 catagttcat taagcaacaa ctgctttctc aactacacga actaaagtcc aagatttagt
     2221 ttttgaaata ggacgacatt ccttaatttc aacaacatca cctaatttag cttcattgtt
     2281 ttcatcgtgt acatgaagtt tagtagtacg acggataaac ttaccgtata acggatgttt
     2341 aactgtacgt tcgatagcaa caacaaatga tttatccatt ttgtcgctaa ccactttacc
     2401 ttgtactgta cgaattttat cagtcattat tcacccgcct tttcggttaa tacagtttta
     2461 acttgtgcaa tactacgacg cacttgtttt aactggtggg tttgttgaag ctgaccggtg
     2521 gctgcttgca tacgcaattt gaattgttca cctaaaaggt tcactaactc accattcagc
     2581 tcttcaacac ttttattacg tagttcttga gctttcatta catcaccgtc ttagttacaa
     2641 atgtggtttt gaacggaagt ttagctgccg ctaatgcaaa cgcattgcgt gcaacttctt
     2701 cagaaacacc atccatttca tagagaactt tacccggttg gattaaggct acccagtact
     2761 caacgttacc tttaccttta cccatacgga cttctaatgg tttttcagta attggtttgt
     2821 ctgggaacac acggatccag attttacctt gacgtttaac cgcacggctc atcgcacgac
     2881 gagcagcttc aatttgacga gctgttaaac gaccacggcc aatagctttt aaaccaaatg
     2941 aaccgaagct cacttctgtg ccacccgcga taccacggtt acggcctttg tgtactttac
     3001 ggaattttgt gcgttttggt tgtaacattc agtgattctc cttatttacg acctttgcca
     3061 cgtggcgcct ttttaggctg tgccgctggt tctttttcag attcaatcac tgcagccatt
     3121 ccaccaagaa tttcaccttt gaagatccac acttttacgc cgattacgcc gtaagtagtg
     3181 tgagcttcag cagtactata atcgatgtct gcacgaagcg tatgtagagg tacacgacct
     3241 tcacgatacc attctgagcg agcaatttct gcaccaccta aacgaccgct aacttcaact
     3301 ttgatacctt tagcacctaa tttcatcgcg ttttgaactg cttttttcat tgcacgacgg
     3361 aacatcacac gacgttcaag ttgagaagcg atgctatctg cgactaattt cgcatctagc
     3421 tctggttttt tcacttcagc gatgttgatt tgagctggaa cgccagcgat tttcgcaact
     3481 gcgttgcgta atttttcaac atcttcacct tttttaccga taacgatacc cgggcgagct
     3541 gtgtgaatag ttacacgaat gctttttgca ggacgctcaa tagtgatgcg tgatacagaa
     3601 gcgttcgcta actctttgtt taaaaattta cgtactttga agtcgccgtc taagttatca
     3661 gcgaaatctt gtgtattcgc gaaccaagta gagttccaag gtttaacaat acctaggcga
     3721 ataccattag gatgtacttt ctgacccatt tgttattctc ctacttaatt aacgatctga
     3781 cacaaccaca gtgatgtggc ttgtacgttt taaaatacga tctgcacgac cttttgcacg
     3841 tggcattaca cgtttcatgc ttggaccttc atcaacgaag attttagcaa ctttaagatc
     3901 atcgacatct gcaccgtcat tatgctctgc gtttgcaata gctgactcta atactttctt
     3961 aacaagcgtc gctgcttttt tgttagtgaa agttaagatt tctaatgcta cagaaacttt
     4021 tttaccgcga attaaatcag caactaagcg agctttttgg gcagaagtac gagcgtaacg
     4081 atgtttagca atagtttcca tcttttacct cttatttctt agctttctta tctgcggcgt
     4141 gaccgcggta tgtacgagtc ggtgcaaatt cacctaattt atgaccgatc atttcgtcgg
     4201 aaacataaac aggaacgtgc tgacgaccat tatggactgc gatggtcaaa ccaatcattg
     4261 atggaatgat cattgaacga cgggaccaag ttttaattgg ttttttatcc ccgctttcca
     4321 ccgccttctc taccttcttc aacaagtgta ggtcaaggaa aggacctttc ttgagggaac
     4381 gtggcattgg tgtttacctt ttagttaatg aattaaatta tttgccacga cgacgtacga
     4441 tgaatttatc agtacgtttg ttgtgacgag ttttcttacc tttggtttga acgccccaag
     4501 gtgtaacagg atgtttaccg aagttacgac cttcaccacc accgtgtggg tgatctaccg
     4561 ggttcattgc agtaccacga acagttggac gaatacctct ccaacggttt gcacctgctt
     4621 taccaagaac gcgaagcata tgctctgagt tacctacttc accaatggtt gcagtacact
     4681 cagctaatac tttacgcatt tcgcctgaac gaagacgtaa agttacatag ttaccttcac
     4741 gggcaatgat ttgaacgtaa gcaccagcag aacgtgcaat ttgaccacct ttaccaggtt
     4801 ttaattcaac gttgtgtaca gttgtaccta ctgggatgtt acgcattggt aatgcgttac
     4861 ctactttaat cggagctgaa gcacccgctt gaatttgatc accagcagtt aaaccttttg
     4921 gtgctaaaat atagcgacgt tcaccatctt tataaagtac taatgcgata ttcgcagaac
     4981 gatttggatc gtattctaaa cgctcaacaa cacccggaat gtctaattta ttacgtttaa
     5041 aatcaattaa acggtagtgt tgtttgtgac cgccaccaat gtgacgagtt gtgatacgac
     5101 ctaagttgtt acgaccacca gttttagatt tagtatctaa aagtgctgca aaaggtttac
     5161 ctttgtgaag ctcagcgttt acaactttaa caacgtgacg acgaccagcg gaggtcggct
     5221 tacatttaac gatagccatt tattttatct cctctgatta ctctgccgca ccttcaacga
     5281 agtcaagcga ttgaccttct tgaagagtta cataagcttt tttccagtca ctacgacgac
     5341 caactttagc accacggcgt ttagttttac ctttaactac tacggtacga acagaatcaa
     5401 cttttacttc aaaaagttct tcaactgcat ttgcaatctc aactttgttt gcatctaatg
     5461 caactttgaa tacgattgta ttgccttttt ctgcgttgtt tgtcgctttt tcagagatat
     5521 gtggtgcttt aagcacgttt agcaaacgtt cttgttgaat catgctaaca tctcctcaat
     5581 ttgttttact gcatctacgg ttacaaccac tttatcgaaa gcaattaagc taactgggtc
     5641 aataccttgc acatcacgca catcaacttt atataagttg cgtgctgcta agaataaatt
     5701 ctcatctacg tttgcagtaa tgataagagc gtcatttaac gccatatctt ttaatttttg
     5761 tgctaatact ttagtttttg gtgcatcgat ttcgaatttc tcaacaacca ctaaacggtc
     5821 ttgacgaact aattcagaaa gaatgctttt gattgcacca cggtacattc ttttgttcac
     5881 tttttggctg tgatcttgtg gtttcgcagc aaaagttaca ctacccgaac gccaaattgg
     5941 tgatttaata tcaccagaac gtgcacggcc tgtacctttt tgacgccaag gttttttacc
     6001 tgaaccagac acttcagcac gagttttttg agcacgagat ccttgacgag cacctgctgc
     6061 ataagcaaca actacttggt ggattaatgc ttcattgaac tcacgtccga aggtagtttc
     6121 agaaacagtt agtgcgtttg cacctacaac ttgtaattcc atctctatct cctagactta
     6181 tgctttaact gccggtttta cgataacatc accattagtt gcaccaggaa cggcaccttt
     6241 aactaataat aatttacgct caacatctac acgaacaact tcaagtgatt gaacggttac
     6301 acgctctgca cctaagtgtc ctgccatttt tttaccttta aacacacgac ctggagtttg
     6361 gttttgacca atagaaccaa gtacacgatg tgataaagag ttaccgtgag ttgcatcttg
     6421 agtacggaag ttccaacgtt taacaccacc ttggaagcct ttaccttttg atgtaccagt
     6481 aacatcgact tttttaacat cagtaaagat gtcaacattg atttcttgac ctaaagtgaa
     6541 ttcttcacct tcagtagtac gaaattccca taaaccgcgt ccagcttcaa cacctgcttt
     6601 cacgaaatga cctgcttctg gtttagttac acggctagct tttttagagc cagtagtaac
     6661 ttgaattgca gagtagccat cgttttcaag ggttttaact tgagtaacac ggttggcttc
     6721 gatttcgata acggtaactg gaatagacac gccgtcttca gtgaaaacgc gggtcatacc
     6781 aactttacga ccgattaaac caatcattgt aataacctct taaaattccc aattaaccta
     6841 gactaatctg aacgtcaacg ccagcagcta gatctaaacg cattaatgca tcaacagttt
     6901 tttctgttgg ttcaacaata tcaactaaac gtttgtgagt acggatttca tattggtcac
     6961 gtgcatcttt attcacgtgt ggagaaatca atacagtgaa acgttcttta cgagttggta
     7021 aaggaattgg accacgaact tgtgcaccag tacgtttagc tgtttctacg atctccgcag
     7081 tagattgatc aattaaacga tgatcaaatg cttttaagcg gatacggatt ctttggttct
     7141 gcattagacc agagctccaa ttaaaaaatt tagctaataa aaaaaccaaa ctaccactta
     7201 acaaattagt taagggagct cagttaaacc tatatagttc caaaattagg aacattgtat
     7261 acactacaat atctgtagtg ccatttgata aatgattaca tcaaatgtct ttagatacct
     7321 aaagctttgc tatcatactc gtttcatttc ccttatgcaa gtaatttttg ttttttatat
     7381 tgacaataat ttgattcgat aaaacttcta aagatacaca atatttccaa tacttcattt
     7441 gaagtggctc aaataaattg tatttatgca tttttttatt caaacttttc gagccacttc
     7501 acaaatctaa aaaatcctag
//
LOCUS       DANLZD010000125         7517 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.125, whole genome shotgun sequence.
ACCESSION   DANLZD010000125 DANLZD010000000
VERSION     DANLZD010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7517)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7517)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7517
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.125"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            28..1491
                     /gene="ubiD"
                     /locus_tag="PXE26_002038"
     CDS             28..1491
                     /gene="ubiD"
                     /locus_tag="PXE26_002038"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HDL5594596.1"
                     /translation="MKYKNLREFLDFLESQGELVRIQQEIDPYLEMTEIADRTLRKGG
                     PALLFENPKGYQMSVLCNLFGTPKRVALGMGQEDTKALRELGKLLAFLKEPEPPKGFK
                     DLIGQLPQWKQILNMPPKVLSKADCQQVVISGDEVDLYKLPIMHCWPGDVAPLVTWGL
                     TITQGPYKKRQNLGIYRQQLIGKNKLIMRWLSHRGGALDFQEWKAENPGKPFLVSVAI
                     GADPATILAAVTPVPDTLSEYAFAGLLRGHKTEVVKSISNELEVPASSEIVLEGYIDL
                     EETALEGPYGDHTGYYNEQEYFPVFTVTHITMRKDAIYHSTYTGRPPDEPAVLGEALN
                     EVFIPILQKQFPEIVDFYLPPEGCSYRLAVVTMKKQYAGHAKRVMMGVWSFLRQFMYT
                     KFVIVCDDDVNARDWKDVIWAITTRCDPARDTTLIEHTPIDYLDFASPIAGLGSKMGI
                     DATNKWAGETTREWGTPIEKDDNVVKRIDEIWDSLGI"
     gene            complement(1576..2400)
                     /locus_tag="PXE26_002039"
     CDS             complement(1576..2400)
                     /locus_tag="PXE26_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5594597.1"
                     /translation="MDSLTHLFTQFQFRTDLFHLGQLCQIGSFNEENKGYLHFVRQGR
                     FILNQAAERPITIERPAIIFSPTNILHSLHPLDDSGLDIFCINFDFGKGIRNPLTHTL
                     HNIVILELAQYPELGVLADQIFSEVNQKGCGYQAMIHHLCAYFTLKVARQCLEKGYIQ
                     TGLLKGLADKQLGKVLLAIHNAPERDWNVEELANVALMSRSRFAAYFKQTMGVSPMDY
                     LTNWRLAVAQHLLQKGIPVALVAEQVGYSHNAALSRVFMRELGLSPTEWLAQNKES"
     gene            2527..3372
                     /locus_tag="PXE26_002040"
     CDS             2527..3372
                     /locus_tag="PXE26_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HDL5594598.1"
                     /translation="MMSQEQFEEINQERRQALNHGSRIAMAASVLGALGIASTANAKQ
                     ASAEKSPYAEPEQYGLKRHGMTIDPKRVALVVVDPQIDFLGPKGVMWGVLGDSIKENN
                     TVANIESLFKAAKAVDMPTFVSPHYYYPTDHKWEFGSPGEHFMHDSGMFARKGQYTME
                     GFENSGADFMPEYKPYIFDGKTVITSPHKIFGPETNDLVLQLRKRKIDQVILAGMAAN
                     LCIDSHLRELIEQGFEVTVVKDATAGPRIPEGDGYLAALTNYRIIANDLWTTEEAVKK
                     MTAKA"
     gene            3829..6771
                     /gene="rne"
                     /locus_tag="PXE26_002041"
     CDS             3829..6771
                     /gene="rne"
                     /locus_tag="PXE26_002041"
                     /EC_number="3.1.26.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E"
                     /protein_id="HDL5594599.1"
                     /translation="MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKG
                     KITRVEPSLEAAFVDYGAERHGFLPLKEISREYFPSDYVFNGRPNIKDIIQEGQEVIV
                     QVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDV
                     PEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAI
                     RDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDFINRVKLYEGEVPLFSHYQIESQIES
                     AFQREVRLPSGGSIVIDVTEALTAIDINSSRSTRGGDIEETALNTNLEAADEIARQLR
                     LRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFARISRFGLLEMSRQRLS
                     PSLSEASSHICPRCQGTGKVRDNESIALSILRLLEEEAIKENTAQVHTIVPVQIASYL
                     LNEKRKAISSIEKRHDVQIVVVPSESMETPHFSVYRLRENEITPTLSYDLTKHYEARH
                     EEEHPHHHHQEDVLVTRNEPVITVESVLQSSELNLQPSPTPTEPPKPSLLSRLIATIK
                     GWFSEEKVEEKPKPKARNQRERRQRRERPNRNAKAENQERKTPQAQTTPAEEKPMRSE
                     KKARRAVVEEVSGVTEQESRSNSREVQTERRQRRDLRKKVRIETQEVEVENLTPAVEE
                     TVAKQVENVQKNQQIQPLATQEVPVETAPEVETTNEGRENNRQRRLPRHLRVGNQRRR
                     ENQRNQVISPMPLTSAVASPELASGKVWVQVTSTVKVEEKASFLSVDQMLEQQENQLV
                     ETEKKSEEKKLHTVSPLGGFVAQATNRDLVKEKQEQLSKPKEEKVASEDVKPVEVKEH
                     IAPFGSVVAQHSERDLVKEKNERVSKFQSQATVAPAIVEEVTNPIEVPKSTYESDYRF
                     NGRLGTFSRVEHTQAAMTIASAPSDKLEVVEISQWQNSKYYFYGKGFGGYTSAVSQVQ
                     SAPRSTNG"
     gene            6917..7477
                     /locus_tag="PXE26_002042"
     CDS             6917..7477
                     /locus_tag="PXE26_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594600.1"
                     /translation="MKKSFLSLLVLGTTMALAACDQAKEAAQSTTDKAVEVKEAVAEK
                     AAEVKSATEAKVEELKAAANDAAQATADKTEEAKKAVAEKATELKTTTEAKVEELKAA
                     ANDAAQATTDKTEEAKKAVAEKAAELKATTEAKVEELKAAASDATQATADKAEEAKKA
                     VAEKAAEVKVETETKVEEMKKAIESK"
BASE COUNT         2435 a         1589 c         1650 g         1843 t
ORIGIN      
        1 gcaaaaaaat cgaaaaatat gaccgctatg aagtataaaa atctccgtga atttctcgat
       61 ttccttgagt ctcagggtga attagtccgt attcagcaag aaatcgatcc ttatttagaa
      121 atgacagaaa tcgccgaccg caccttacgc aaaggcgggc cggcattact gtttgaaaac
      181 ccgaaaggct atcaaatgtc ggtgttgtgt aatttattcg gcacgcccaa acgggtagct
      241 ctgggaatgg ggcaagaaga taccaaagct ctgcgtgagc tgggcaagtt acttgccttt
      301 ttaaaagagc ctgaaccacc gaaagggttt aaagatttga tcgggcaact gccacaatgg
      361 aagcaaattt taaatatgcc gcctaaggta ctgagcaaag ccgattgtca gcaagtggtg
      421 atttcgggtg atgaggttga tctctacaaa ttaccgatta tgcactgttg gccgggcgat
      481 gtcgctccac tggtcacttg ggggctgacg attacgcaag ggccttacaa aaaacgccag
      541 aatttaggca tttatcgtca gcaacttatc ggcaaaaaca aactgattat gcgttggctt
      601 tcccaccgtg gcggtgcgtt agacttccaa gagtggaaag ccgaaaaccc gggtaaaccg
      661 tttctggtgt cggttgcgat tggtgcagat ccagccacta ttttagcggc agtcacccct
      721 gtgccggata cgctttcgga atatgcgttc gcagggctgt tgcgagggca taaaaccgaa
      781 gtggtcaaat ctatttccaa tgagttagaa gtgccggcaa gtagcgaaat tgtgctggag
      841 ggctatatcg atctggaaga aaccgcattg gaaggccctt atggcgacca caccggctac
      901 tacaacgagc aagagtattt tccggtattt accgttaccc atattacgat gcgaaaagat
      961 gcgatttatc attctaccta cactggcaga ccacctgatg aaccggcagt attaggtgaa
     1021 gcattgaatg aagtctttat tccgattttg caaaaacagt ttccggaaat tgtcgatttc
     1081 tacttgccac ctgaaggctg ttcttaccgt ttagcggtag tgacgatgaa aaaacaatat
     1141 gccggacacg ctaaacgggt gatgatggga gtttggtcgt tcctgcgtca atttatgtac
     1201 accaagtttg tgattgtgtg cgatgacgat gtgaacgctc gagattggaa agatgtaatt
     1261 tgggcgatca ccacccgttg tgacccggct cgagatacga cactgattga acacacgccg
     1321 atagattatc tcgattttgc ctcgccaatt gcagggttag gctcaaaaat ggggattgat
     1381 gccaccaata aatgggcggg tgaaaccacc cgagaatggg gaacacccat cgaaaaagat
     1441 gacaatgtgg tgaaacgcat tgatgagatt tgggattctc ttggcattta aggcaacatt
     1501 taaccgcttg tgcaacataa caagcggtta aattttttga catttttacc attcggctat
     1561 ttgtttctca tcaggttacg actctttatt ttgagccagc cactcggtag gcgaaagccc
     1621 taattcccgc ataaagacac ggctgagagc agcattatgg ctataaccga cttgctctgc
     1681 caccaatgct actggtatcc ctttttgtaa taaatgctgg gcaaccgcta gtcgccagtt
     1741 agtgagataa tccatcggtg aaacccccat cgtttgttta aaataagcag caaagcgtga
     1801 gcgagacatt aatgccacat ttgccaactc ctctacattc caatctcgct ctggtgcatt
     1861 gtgaatagct aacagcactt tccccagttg cttatctgcc aagcctttta acaaacctgt
     1921 ttgaatatac cctttttcca aacattggcg ggcaactttc aaggtaaaat aggcacataa
     1981 atgatgaatc attgcctgat aaccacaccc tttctgattc acttcactaa aaatttgatc
     2041 ggctaatacc cccaattccg gatactgtgc caactctaag atcacaatat tgtgcaaggt
     2101 atgagttaat gggttgcgaa tccctttgcc aaaatcaaaa ttaatacaaa atatatctaa
     2161 cccactatca tctaacgggt gcaaactatg caaaatattg gttggtgaaa aaataatcgc
     2221 tgggcgttca atcgtaatcg ggcgttcggc agcctgattt aaaataaaac gtccctgacg
     2281 aacgaaatgt aaatagcctt tattctcttc attaaaactc ccgatttggc ataactgacc
     2341 tagatgaaat aaatccgtgc gaaactgaaa ttgggtaaaa agatgagtca aactatccac
     2401 attaagctcc ttgggtaaag aattgagacg aacggttaaa acaggagaaa tgcgatcact
     2461 ataatagcaa cccgttcggt aacgcaagtt atcattacaa tttgtatatc tattaatgag
     2521 gataaaatga tgtcacagga acaatttgaa gaaatcaacc aagaacgccg tcaagccctt
     2581 aaccacggct ctcgtattgc aatggcagcc agtgtattag gtgcattagg tattgcatca
     2641 acagcaaatg caaaacaagc cagtgcagaa aaatcacctt atgccgagcc ggaacaatac
     2701 ggtttaaaac gccatggaat gaccattgat ccaaaacgtg tggcattagt ggtagttgat
     2761 ccacaaattg acttcctagg cccgaaaggc gtgatgtggg gcgtgttagg tgactcaatt
     2821 aaagaaaaca acactgtagc taacattgaa agcttattta aagcagcaaa agcagtcgat
     2881 atgccaacct ttgtttcgcc acactactat tacccgactg atcacaaatg ggaatttggt
     2941 tcaccgggtg aacactttat gcacgacagc ggaatgtttg cgagaaaagg tcaatacacc
     3001 atggaaggct ttgaaaattc aggtgcagac tttatgcctg agtacaaacc atacattttt
     3061 gatggcaaaa cagtgattac ctctccacac aaaatctttg gaccggaaac caatgactta
     3121 gtgttgcaat tacgcaaacg taaaatcgac caagtaattt tagccggtat ggctgccaac
     3181 ttatgtattg attcacactt gcgtgaatta atcgaacaag gttttgaagt aacagtggtg
     3241 aaagatgcaa ccgcagggcc tcgtattcct gaaggtgacg gctaccttgc agcattaacc
     3301 aactaccgta ttatcgcaaa tgacctctgg accactgaag aagcagtgaa aaaaatgacg
     3361 gcaaaagcat aatattcgct ttacaagcgg ttaaatttag ctcttttttt gcaaatttaa
     3421 ccgcttggat ttcacgctta tctccagcac tcacactaaa tctcattatt tttccttatc
     3481 accccattca ttttcattat attcatctcc acaacaaata acagctacca tacaacaatt
     3541 accttgcctt tttcagggtt aaaatgcgat aatgactcgt tatttttggc ttgaaaaagc
     3601 aatagaaaat tgcaaaaaat aaagcaaaaa taaccgcttg taatagagat aaacaagcct
     3661 taagtgattg attttgcagt ttctttaaga caagacaaag taaacgtaag acaaccatca
     3721 atgcactatc gggaatgaag acagtcgtga gatagacatt aaatccattc ccttattaat
     3781 gggtcaaaat gaccgtgtaa gacaaaaaca aaataatgag aaaacacaat gaaaagaatg
     3841 ttaatcaatg caactcaaaa agaagagttg cgtgttgccc tcgttgatgg gcaacgctta
     3901 tttgacttgg acattgaaag cccgggtcac gaacagaaaa aatccaatat ctacaagggt
     3961 aaaattaccc gtgtcgaacc aagccttgaa gctgcattcg tagattacgg tgcagaacgc
     4021 cacggcttcc tacctttaaa agaaatttcc cgagaatact tcccgtcaga ctatgtgttt
     4081 aacggtcgcc cgaatatcaa agatattatt caagaagggc aagaagtgat tgttcaagtc
     4141 agcaaagaag agcgtggtaa caaaggagca gccttaacca cctttatttc gcttgcgggc
     4201 agttacttag tcttaatgcc gaacaaccct cgtgccggtg gtatttcccg ccgtattgaa
     4261 ggtgatgagc gtttagaact caaagaggct ttagactgct tagatgtacc ggaagacgtg
     4321 ggcttaatcg ttcgtaccgc cggtgtcggc aaatcgccgg aagagttaca atgggactta
     4381 aaagtcttgt tacaccactg ggaagcgatt aaaaaagcgg cggaatctcg cccagctccg
     4441 ttcttaattc accaagaaag tgacgtgatt gtgcgtgcaa ttcgtgacta tctacgccgt
     4501 gatattggcg aaatcttaat cgacaacaaa aaagtgttcg agaaagccaa aaaccacatt
     4561 cgccttgttc gcccggattt catcaaccgt gtgaaattat acgaaggcga agtaccacta
     4621 ttcagccact atcaaattga atcgcaaatc gaatcggcat tccaacgtga agtgcgttta
     4681 ccttccggtg gctctatcgt tattgatgta acagaagcct taacagcaat tgatattaac
     4741 tcctcacgtt caacccgtgg cggcgatatt gaagaaaccg ctcttaacac caacttagaa
     4801 gcggcagatg aaattgcccg tcagttacgt ttgcgtgact taggtggttt gattgtgatc
     4861 gactttatcg atatgacacc ggttcgccac caacgtgaag tagaaaaccg tattcgtgag
     4921 gcgacacgcc aagaccgtgc gagaatccaa tttgcccgta tttcccgttt cggtttgtta
     4981 gaaatgagcc gtcagcgttt aagcccatca ttaagtgagg cttcatcgca tatctgccct
     5041 cgctgtcagg gaactggtaa agtacgtgat aatgaatcaa tcgcactgtc aatcttacgt
     5101 ttattagaag aagaggcaat caaagaaaac actgcacagg ttcacaccat tgtgccggtg
     5161 caaatcgcca gctacttact caacgaaaaa cgtaaagcga tttccagcat tgaaaaacgc
     5221 cacgatgtac aaattgttgt agtaccgtct gaaagtatgg aaacgccgca tttcagcgta
     5281 tatcgcctgc gtgaaaatga aattactcca acgttaagct acgatttaac caagcattac
     5341 gaagctcgtc atgaagaaga acacccacat catcaccatc aagaagatgt gctggttacc
     5401 cgtaacgagc cggtgattac ggtagagtca gtgttacaaa gctcggagct gaatctccaa
     5461 ccttcgccaa caccaaccga accaccaaaa ccatcgctgt taagccgctt aattgcgacc
     5521 attaaaggct ggtttagtga agaaaaagtg gaagaaaaac cgaagccgaa agcacgcaat
     5581 cagcgtgagc gtcgccaacg ccgtgaacgc ccgaaccgta atgctaaagc ggaaaatcaa
     5641 gagcgtaaaa ctccgcaagc tcaaactact ccagcggaag aaaaaccgat gcgtagcgag
     5701 aaaaaagcac gccgagcggt agtggaagaa gtttccggtg taaccgagca agagagtcgt
     5761 agcaactccc gtgaggttca aactgaacgt cgccaacgcc gtgatctacg taaaaaagtg
     5821 cgtatcgaaa cacaagaagt agaagtggaa aatctaacac ctgctgttga ggaaacggtg
     5881 gcaaaacaag ttgaaaatgt gcaaaaaaat caacaaattc aaccgcttgc aacccaagaa
     5941 gtacctgttg aaacagctcc tgaggtagaa acaacgaacg aaggacgtga aaataaccgc
     6001 caacgccgtt tacctcgcca tttgcgtgtg ggcaatcagc gtcgtcgtga aaatcaacgc
     6061 aatcaggtta tttctcctat gcctctaact tcagctgttg cttcgcctga gcttgcgagc
     6121 ggtaaagttt gggttcaggt tacctctact gtcaaagtag aggaaaaagc atcattctta
     6181 tctgttgatc aaatgcttga acagcaagaa aatcagcttg ttgagacaga gaaaaaatca
     6241 gaagagaaga agcttcatac agttagtccg ctaggtggct ttgtagcaca agcaactaac
     6301 cgtgatttgg ttaaggagaa gcaagaacag ctttccaaac cgaaagaaga aaaagttgct
     6361 tctgaagacg taaaaccagt agaggtaaaa gagcatattg ctccatttgg tagtgttgtt
     6421 gctcagcatt ctgaacgtga tttagttaaa gagaaaaatg agcgagtcag taaattccaa
     6481 tcgcaagcaa cggttgcacc agcgattgtg gaagaggtta ctaacccgat tgaagtgcca
     6541 aaatcaactt acgaaagcga ttatcgattt aacggcagat taggtacatt ctctcgtgtt
     6601 gagcataccc aagccgctat gaccattgct tctgcaccaa gtgacaagct tgaagtagtc
     6661 gaaattagcc aatggcaaaa ctctaaatac tatttctatg gcaaagggtt tggcggatat
     6721 accagcgcag tgagccaagt gcagtcagcg cctcgttcaa ccaatggtta agtacaatta
     6781 attggtttaa atgcctatta gttataacta ataggcattt ttttatcaaa gtatgaactt
     6841 tctatcaatt tttctgccta agtaaacgca ctttattaca aagtgcgtta tttttagttt
     6901 atttaaggaa ctcggtatga aaaaatcatt tttatcatta ttagtgttag gtacaactat
     6961 ggcacttgct gcttgtgatc aggcaaaaga agccgcgcaa tcaactacag acaaagcggt
     7021 tgaagtaaaa gaagctgtag ctgaaaaagc tgcagaagtt aaatcggcta ctgaagcgaa
     7081 ggttgaagag ttgaaagcgg cagcaaatga tgcagctcaa gcaacagcag ataaaacaga
     7141 agaggcaaaa aaggcagtgg cagagaaagc cactgagtta aaaaccacaa ctgaagctaa
     7201 agtggaagaa ctaaaagcag cagcaaatga tgcagctcaa gcaacaacag ataaaacaga
     7261 agaggcaaaa aaggcagtag cagagaaagc tgctgagtta aaagccacaa ctgaagctaa
     7321 agtggaagaa ctaaaagcag cagcaagtga tgcgactcaa gcaacagcag ataaagcaga
     7381 agaagctaaa aaggcagtag ctgagaaggc agcagaagtg aaagttgaga cagaaacaaa
     7441 agttgaagaa atgaaaaaag cgattgaaag caaatagtgc tttttagttt ctctgtagct
     7501 atcgaaacac gctaaaa
//
LOCUS       DANLZD010000126         7456 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.126, whole genome shotgun sequence.
ACCESSION   DANLZD010000126 DANLZD010000000
VERSION     DANLZD010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7456
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.126"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..498
                     /locus_tag="PXE26_002043"
     CDS             <1..498
                     /locus_tag="PXE26_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HDL5594601.1"
                     /translation="QTINEIKEEIYPIFEPIIGTIRLKTYFSYYAVFKDGLMIALYQN
                     GATYLRIAKKDIEYIRQYPKTCILCDEKIGIQSRKFHYIPQVLIDDTPKFSSLLFGII
                     EELRTEKYKISQKRATQIRNLPNMNLKLERMLKKIGIHSIHDFTQEGYMSTFIKLILH
                     RRLTV"
     gene            786..2180
                     /gene="fumC"
                     /locus_tag="PXE26_002044"
     CDS             786..2180
                     /gene="fumC"
                     /locus_tag="PXE26_002044"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005567406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HDL5594602.1"
                     /translation="MEFRIEKDTMGEVQVPADKYWAAQTERSRNNFKIGPEASMPAEI
                     IEAFGYLKKAAAYANHDLGVLAVEKRDLIAKACDEILANKLDDQFPLVIWQTGSGTQS
                     NMNVNEVVANRAHVLNGGKLGEKSIIHPNDDVNKSQSSNDTYPTAMHIAAYKKVVEHT
                     LPCVKRLQKTLAEKAEAFKDVVKIGRTHLMDATPLTLGQEFSAYAAQLAFGIKALENT
                     LPHLRELALGGTAVGTGLNTPQGYDVKVAEYIAKFTGLPFVTAQNKFEALATHDAIVE
                     THGALKQLAVSLYKIANDVRLLASGPRSGIGEILIPENEPGSSIMPGKVNPTQCEAMT
                     MVCAQVLGNDVTISFAGTQGHFQLNVYKPVMAYNFLQSAQLLGDACVSFDEHCAVGIE
                     PNYPRIKQQLDQSLMLVTALNTHIGYENAAKIAKTAHKNGTTLKEEAINLGLVTAEQF
                     DEWVRPEDMVGSLK"
     gene            2307..2417
                     /locus_tag="PXE26_002045"
     CDS             2307..2417
                     /locus_tag="PXE26_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005696979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDL5594603.1"
                     /translation="MKKLILIALVTTLGLSACGVKGPLYFPEQAPKHEQK"
     gene            2522..3772
                     /gene="lysA"
                     /locus_tag="PXE26_002046"
     CDS             2522..3772
                     /gene="lysA"
                     /locus_tag="PXE26_002046"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HDL5594604.1"
                     /translation="MNHFEYKNNQLFAEEVAIADIIEQYGTPAYVYSRSTLERHWHAF
                     NNAFGSHPHLVCFAVKSNSNIALLNVMARLGSGFDIVSQGELERVLAAGGEASKVVFS
                     GVAKSHSEIKRALEVGIRCFNIESVSELHRINQVAGELGKIAPISLRVNPDVDAHTHP
                     YISTGLKENKFGVSVTQAREVYRLAKTLPNVKITGMDCHIGSQLTELQPFLDATDRLI
                     ILMEQLREDGIELHHLDLGGGLGVPYNGEEPPHPTEYAKALLEKLKGYENLEIIIEPG
                     RAITANAGILVTKVEYLKQNEDRNFAIVDTGMNDMIRPALYEAYMQITEVDKTLNRDK
                     AVYDVVGPICETSDFLGKQRELAISEGDLIAIRSAGAYGAAMSSTYNSRPQAAEIMVD
                     GNQAHLIKARATFADLWRLEKLLP"
     gene            3786..4415
                     /locus_tag="PXE26_002047"
     CDS             3786..4415
                     /locus_tag="PXE26_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HDL5594605.1"
                     /translation="MKLYGLTGACSFVPHVALEWVKLRANQDYAFQAVSREFIKSAEY
                     LALNPRGNVPLLVDGDLALTQNQAIVHYLDELYPEAKLFGSKTARDKAKAARWLAFFN
                     SDVHKSFVPLFRLPSYAEGNETLTKTIRQQSAEQILEQLAFANAHLENHIFFGEEISV
                     ADAYLYIMLNWCRLLGLDFSHLSQLSAFMQRVEADQGVDNVREQEGLKG"
     gene            4486..5931
                     /gene="tldD"
                     /locus_tag="PXE26_002048"
     CDS             4486..5931
                     /gene="tldD"
                     /locus_tag="PXE26_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HDL5594606.1"
                     /translation="MLNQVSNSLLAPSGLELSHLTQVLDHFSGRHIDYADLYFQLSQD
                     ESWSLEDSIIKEGGFYIDRGFGVRAISGEKTGFAYADQITLKQLEQCAAAARSISPTS
                     GQLSVKNFKKTTACSRYPAINPLETISREQKVELLHLVDKTARMADPRVIQVNANLSA
                     VYEEMLVAATDGTLAADIRPLVRLSVSVLVEQNGKRERGSAGAGGRFGLDWFLAPSET
                     GFSRAESLTKEAVRQALVNLTAIPAPAGTMPIVLGAGWPGILLHEAVGHGLEGDFNRK
                     ESSLFSGKIGQMVTSELCTIVDDGTVPNMRGSITVDDEGVPSQRNVLIENGILKGYMQ
                     DKLNARLMGVAPTGNGRRESYAHLPMPRMTNTYLTEGNHEFEEMIESVEYGLYAPHFS
                     GGQVDITSGKFVFSTAEAYLIEKGKITKPVTGATLIGSGIEAMQQVSMVGKKMELDPG
                     IGTCGKEGQSVPVGVGQPTVKLDKITVGGRG"
     gene            5995..6876
                     /gene="prmA"
                     /locus_tag="PXE26_002049"
     CDS             5995..6876
                     /gene="prmA"
                     /locus_tag="PXE26_002049"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HDL5594607.1"
                     /translation="MAWVQIRLNSTDKQAEEISDFLTEIGAVSVTFMDSQDTPIFEPL
                     PGETRLWGNTDVVGLFDAETDMNLIVEALKTSKLVDENFAHKIEQIEDKDWEREWMDN
                     FHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLEGK
                     TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASQNNAEANGVAEKLQLFLAKDQ
                     PRELQADVVVANILAGPLKELAPNIITLVKPNGNLGLSGILATQAESVCEAYSEAFTL
                     DPVVEKEEWCRITGRKI"
     gene            complement(7051..7126)
                     /locus_tag="PXE26_002050"
     tRNA            complement(7051..7126)
                     /locus_tag="PXE26_002050"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7091..7093),aa:Trp,seq:cca)
     gene            complement(7192..7268)
                     /locus_tag="PXE26_002051"
     tRNA            complement(7192..7268)
                     /locus_tag="PXE26_002051"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7232..7234),aa:Asp,seq:gtc)
     gene            complement(7279..7394)
                     /gene="rrf"
                     /locus_tag="PXE26_002052"
     rRNA            complement(7279..7394)
                     /gene="rrf"
                     /locus_tag="PXE26_002052"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT         2223 a         1663 c         1645 g         1925 t
ORIGIN      
        1 caaacaatca atgaaattaa agaagaaatc taccctatat ttgagcctat cattggaaca
       61 attcggctaa aaacctactt ttcctactac gcagttttta aggatggatt gatgattgca
      121 ttgtatcaaa atggagcaac ttatttacgt attgcgaaaa aagatattga atacattcgt
      181 cagtatccta aaacctgtat cttatgcgat gaaaaaattg gtatacaaag tagaaaattt
      241 cattatattc cgcaagttct catagatgat acaccaaaat ttagctcgct actctttgga
      301 attatagagg aactccgaac ggagaagtac aaaataagcc aaaagcgagc tacacaaatc
      361 cgaaacctac caaatatgaa tttaaagtta gaaagaatgt tgaaaaaaat agggattcat
      421 tccattcatg attttactca agaagggtat atgtcaactt ttatcaaact gattctccac
      481 cgaagactta ctgtttaagc taaacggagc tttaaatcac caatatattt acaccttcac
      541 agatcaacaa aaaagggaac taatgcaaga agcaaatcaa gcgctatata attcaggcct
      601 aagaaaaaga tttaacgccc tgtagttaaa taatgtgatc caaatcataa aatataaaaa
      661 aaccaataag gaattgcaat tcgcagttcc tttctttttc ttttatatgc tagtatcacc
      721 ttatacctct aaattattag tgcctactga ttttcaatta atccaacaat ttaggagagc
      781 gcatcatgga attccgtatc gaaaaagaca caatgggcga agtgcaagtt cctgccgata
      841 aatactgggc ggcgcaaacc gagcgttcac gcaataactt caaaatcggg ccggaggcat
      901 caatgccggc ggaaattatc gaggcgtttg gctatctgaa aaaagcggct gcctatgcta
      961 atcacgattt aggcgtacta gcggtcgaaa aacgggattt aattgcaaaa gcctgtgatg
     1021 aaattttggc gaacaaactc gatgatcaat tcccgctggt gatttggcaa accggctcgg
     1081 gtacgcagtc aaatatgaac gtgaatgaag tcgtggcaaa ccgtgcacac gtgttaaacg
     1141 gcggcaagct gggtgaaaaa tcgattattc acccgaatga tgatgtgaat aaatcccaat
     1201 cttctaacga cacctaccca actgcaatgc acatcgctgc ttacaaaaaa gtggtggaac
     1261 acaccctacc ttgtgtgaaa cgtctgcaaa aaaccttagc ggaaaaagcc gaagccttta
     1321 aagatgtggt caaaataggg cgtactcact taatggatgc taccccgctc acgctcggtc
     1381 aagagttctc tgcctatgca gcacagttag cattcggcat caaagcattg gaaaacaccc
     1441 tgccacacct gcgtgagctg gcactcggcg gcacagcagt cggcaccggc ttgaataccc
     1501 cgcaaggtta cgatgtgaaa gtggcggaat acattgcgaa attcaccggt ttaccgttcg
     1561 ttaccgccca aaacaaattt gaggcattag cgactcacga tgcgattgtc gaaacccacg
     1621 gtgcattaaa acagcttgcg gtgtcgctct acaaaattgc caacgatgtc cgtttattag
     1681 cctccggtcc tcgttcaggc attggcgaaa ttctgattcc ggaaaacgag ccgggttcat
     1741 caattatgcc gggtaaagta aacccaaccc aatgcgaagc aatgacaatg gtatgtgccc
     1801 aagtattagg caacgatgta accatctctt ttgccggcac gcaagggcat ttccaactga
     1861 atgtctataa accggtgatg gcgtacaact tcctgcaatc ggctcaactg ctaggcgatg
     1921 cgtgcgtgtc gtttgacgaa cactgtgcag tcggcattga accgaactac cctcgcatta
     1981 aacaacagct cgaccaatcg ctgatgttag tgaccgcatt aaatactcac attggttatg
     2041 aaaatgcagc gaaaatcgcc aaaactgccc acaaaaacgg cacaacactg aaagaagagg
     2101 cgattaactt aggcttagtc acggcagaac agttcgatga atgggttcgt ccggaagata
     2161 tggttggcag cttgaaataa gcccaaccct tctcttgtaa tctgatttac acctcaatct
     2221 accggtaaga ttgaggtgta attttttata gcgagggtac tgattttgtt ttagaatgaa
     2281 gcatcatttt ttaagcggaa aaacctatga aaaaactcat tttaatcgca ttagttacta
     2341 ctttaggctt aagtgcttgt ggggtcaaag gcccactcta cttccctgag caagccccta
     2401 aacatgaaca aaaataagca ttgcaagcgg tctgttttgg ctaaaatttt gcaaattttt
     2461 gtgaaaaaat gaccgcttgt tgcctctttt ctttcaaaat cccaaacaca acggactttc
     2521 aatgaaccat tttgaatata aaaacaacca actttttgct gaagaagtcg ctattgccga
     2581 tattatcgag caatacggca cgccagctta tgtttactcc agatctaccc ttgaacgcca
     2641 ctggcacgca ttcaataatg cgtttggctc gcacccacat ttagtttgct ttgcagtcaa
     2701 atccaactct aacattgcct tgttaaatgt aatggctcgt ctcggttcag gctttgatat
     2761 tgtctctcaa ggcgagttgg agcgtgtctt agctgccggc ggcgaagcct ctaaagttgt
     2821 cttttccggt gtggcaaaat cgcacagcga aatcaaacga gcattggaag tcgggattcg
     2881 ttgctttaac attgaatcgg tttccgaact tcaccgcatt aaccaagttg ccggtgaact
     2941 aggcaaaatc gcaccgattt cactgcgggt aaacccggat gtggacgccc acactcaccc
     3001 atacatttcc accggtttaa aagaaaacaa attcggcgtg agcgttactc aagcccgtga
     3061 agtgtatcgc ttagccaaaa ccttaccgaa tgtgaaaatt accggtatgg attgtcacat
     3121 cggttcgcaa ttaaccgaat tgcaaccttt tttagatgca acggatcgct taatcatctt
     3181 aatggagcaa ctgcgtgaag acggcattga gctacaccac ttagacttag gtggcggttt
     3241 aggcgtgcct tacaacggcg aagagcctcc gcatccgacc gaatatgcca aagccttgct
     3301 ggaaaagctc aaaggctatg aaaacttaga aatcattatt gaaccggggc gtgccattac
     3361 cgcaaatgcc ggtattttag tgacgaaggt ggaatacttg aaacaaaatg aagatcgtaa
     3421 ttttgcgatt gtcgataccg gtatgaacga tatgattcgc ccggctctgt atgaagccta
     3481 tatgcaaatt acggaagtgg ataaaacctt aaaccgtgac aaagctgttt acgatgtggt
     3541 cggtccgatt tgcgaaacct cggatttctt aggcaaacaa agagaattgg caatttctga
     3601 aggggattta atcgctattc gttctgccgg tgcttatggg gcggcgatgt cttcaaccta
     3661 caactctcgc ccacaagcgg cagaaattat ggttgatggc aaccaagccc atttaattaa
     3721 agcccgagcc acttttgctg atttatggcg tttagaaaaa ttattacctt aatgaggaag
     3781 aaaagatgaa attatatgga ttaaccggtg cttgttcatt tgtaccacac gttgccctag
     3841 agtgggtgaa attgcgtgcc aatcaagatt atgcgtttca agctgttagc cgtgaattta
     3901 ttaaatcggc ggaatatctg gctttaaacc ctcgtggtaa cgtaccattg ttggttgatg
     3961 gcgacttggc cctcacgcaa aaccaagcta tcgtccacta tttagacgag ctttatccgg
     4021 aagctaaatt attcggcagc aaaaccgctc gtgataaagc caaagcggct cgttggttag
     4081 cttttttcaa ttcagatgtg cataaatcat tcgtgccact gttccgcttg ccaagttatg
     4141 cggaaggcaa tgaaacgctc accaaaacta ttcgccaaca atcggctgag caaattttag
     4201 aacaactggc ttttgcgaat gctcatttag aaaatcatat tttctttggc gaagaaattt
     4261 cggttgccga tgcgtatctc tacattatgc tcaactggtg tcgcctacta gggttggatt
     4321 tctctcatct ttcccaactt tctgccttta tgcaacgagt ggaggcagac caaggcgtag
     4381 ataatgtgcg tgagcaagaa ggcttaaaag gttaattcac cattgttcat ttaagacggt
     4441 agattttatg ttaaaatcta ccgtctttta tttttaggaa tcaccatgct aaatcaggtt
     4501 tcaaacagct tgcttgctcc aagtgggctt gaattatcgc acttaactca agtgttagat
     4561 cacttctccg gccgtcatat tgattatgcc gatctctact tccaactcag ccaagacgaa
     4621 agctggagct tggaagacag catcatcaaa gaaggcggtt tttatatcga ccgagggttc
     4681 ggtgtgcgag ccatatcagg cgaaaaaacc ggctttgcct acgccgatca aatcacgtta
     4741 aaacagcttg agcaatgtgc cgctgccgca cgttcaatca gcccaacaag cggtcaatta
     4801 tcggtaaaaa atttcaaaaa aacgaccgct tgttctcgct acccggcaat caacccgcta
     4861 gagaccatca gccgtgaaca aaaggtcgaa ttgctccatt tggtggataa aaccgctcga
     4921 atggcagatc cgagagtgat tcaagtgaat gcgaatctct cagcggtata tgaagaaatg
     4981 ttagtggcag cgactgacgg cacactggct gcggatattc gcccgttagt gcgtttatct
     5041 gtgtcggtac tggtggaaca aaatggcaag cgtgaacgag gttcagcagg tgccggtggt
     5101 cgctttggtt tagattggtt cttagcacca agcgaaaccg gctttagccg tgcggaatcg
     5161 cttaccaaag aagccgttcg ccaagccctc gttaatctca cagccattcc tgcaccggca
     5221 ggcacgatgc cgattgttct cggtgctggc tggccgggca ttttgctcca cgaagcagtc
     5281 ggacacggct tggagggtga ttttaaccgt aaggaatctt cgctcttcag tggtaaaatc
     5341 gggcaaatgg tcacctctga gctttgcacc attgttgatg acggtacggt gccgaatatg
     5401 cgaggctcaa tcacggtaga tgacgaaggc gtgccttcgc aacgtaatgt gttaattgaa
     5461 aacggcattc taaaaggcta tatgcaagac aaactcaatg cccgcctgat gggagttgcc
     5521 ccaaccggca acggcagacg ggaatcttac gctcatttgc cgatgccacg aatgaccaac
     5581 acctacctca ccgaaggcaa tcacgaattt gaagagatga ttgaatcggt cgaatacggt
     5641 ttatatgctc ctcacttcag tggtggacaa gtggatatta cctccggcaa atttgtgttc
     5701 tccaccgccg aagcctactt aatcgaaaaa ggcaaaatca ccaaacctgt taccggtgca
     5761 accctgatcg gcagcggcat agaagcaatg caacaagttt caatggtcgg caaaaaaatg
     5821 gaactcgacc ccggcatcgg cacttgtggc aaagaagggc aatccgtacc agtcggcgta
     5881 gggcagccta cagtgaagtt ggataaaatt acggtggggg gaagagggta atctctcccc
     5941 gtttgcaaaa tataaagaaa atatcaccgc ttgtagcgat aaaaggaaaa caaaatggct
     6001 tgggtacaaa ttcgtttaaa cagtacagat aaacaggctg aggaaatcag cgatttttta
     6061 accgagattg gagcggtgtc agtgactttt atggatagtc aagatacccc aatttttgaa
     6121 cctcttccgg gggaaacccg tctttgggga aataccgatg tggttgggct tttcgatgcg
     6181 gaaactgata tgaatcttat cgtagaagca ctaaaaacca gcaaattggt ggacgaaaac
     6241 tttgctcaca aaatcgagca aatcgaagac aaagactggg aacgggagtg gatggataat
     6301 ttccacccaa tgcagtttgg caaacggtta tggatctgcc caagctggcg tgaagtacca
     6361 gacccgaatg cagtgaatgt tatgttagac cctggtttag catttggcac cggcacacac
     6421 ccaacgacct cgctttgctt acaatggtta gatagcttag atttagaagg caaaacggtt
     6481 atcgacttcg gctgtggctc cggtatttta gctatcgctg cacttaaact cggtgcaaaa
     6541 caagccatcg ggattgatat cgacccacag gcgattttag ctagtcaaaa caatgctgag
     6601 gcgaacggcg tagcagaaaa actacaacta ttcttagcca aagatcagcc aagagagtta
     6661 caagccgatg tcgttgttgc gaatattcta gccggcccac tcaaagagtt agcaccgaat
     6721 atcatcacgc tggttaaacc aaacggcaat ttaggcttat ccggcattct tgctactcag
     6781 gctgaaagtg tgtgtgaggc ttatagcgaa gcctttacgc tagaccctgt tgtagaaaaa
     6841 gaagaatggt gtcgtattac aggccgcaaa atctaatata agaagccctg ttttaaacag
     6901 ggcttacttt ttgataaatt ctactactct ttacctgtct tgggaatcgt tctccctaaa
     6961 ttaattaaca caagcggtag aaataacagg aaaatttaca aattacataa atgaaaaaag
     7021 ccgactgaaa tcagtcggct ttctaaataa tggcaggggc ggagaggctc gaactcccaa
     7081 cacccggttt tggagaccgg tgctctacca attgaactac gcccctattg ataggtattc
     7141 attttgcact tataggggcg aattactatt cgcccctgca ttaaagatta ttggcggaac
     7201 ggacgggact cgaacccgcg accccctgcg tgacaggcag gtattctaac cagctgaact
     7261 accgctccta aattaataga ttgataatgc cctactctca catggcgaat caccacacta
     7321 ccatcggcgt tactgcgttt tacttctgag ttcggtatgg agtcaggtag agccacagca
     7381 ctctggttat caatcaaatt ctttcattta gtcagtttac taaaatatag tttatacttt
     7441 ctaataaact cactaa
//
LOCUS       DANLZD010000127         7378 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.127, whole genome shotgun sequence.
ACCESSION   DANLZD010000127 DANLZD010000000
VERSION     DANLZD010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7378)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7378)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7378
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.127"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(1..106)
                     /locus_tag="PXE26_002053"
                     /pseudo
     CDS             complement(1..106)
                     /locus_tag="PXE26_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            complement(461..4357)
                     /gene="purL"
                     /locus_tag="PXE26_002054"
                     /gene_synonym="purI"
     CDS             complement(461..4357)
                     /gene="purL"
                     /locus_tag="PXE26_002054"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HDL5594608.1"
                     /translation="MTIQTFRGSPALSAFRIQQLLQKFQQNQLPVKSVYAEFLHFVAL
                     NRPLVADEENKIKELLHYGPTLEEDEPTGFCLIVTPRIGTISSWSSKATDIAHNCGLA
                     AVERIERGTAYYLEFSETPNESQLTTLKGLLHDRMMETVLDNESQAEQLFAQQEPKPF
                     TSVDILGGGRKALEEANINLGLALADDEIDYLVENFTQLGRNPNDIELYMFAQANSEH
                     CRHKIFNADWTIDGVKQEKSLFKMIKNTFEKTPDYVLSAYKDNAAVMEGSTVGRFFPD
                     QDGQYRYHQEDAHILMKVETHNHPTAISPFPGAATGSGGEIRDEGATGRGAKPKAGLT
                     GFSVSNLVIPKFEQPWENPLSKPNRIASALDIMIDGPLGGAAFNNEFGRPALLGYFRT
                     YEEKVNSFAGEEIRGYHKPIMLAGGIGNIRAEHVQKGEIPVGAKLIVLGGPAMNIGLG
                     GGAASSMASGKSKEDLDFASVQRENPEMERRCQEVIDRCWQMGAENPILFIHDVGAGG
                     LSNAMPELVHDGECGGKFDLRNILCDEKGMSPLEIWCNESQERYVLAVSPEKLDIFTA
                     LCERERAPFAVIGEATKEKHLTLADPHFDNKPIDLPMNVLLGKTPKMQRDVLSKTVKN
                     PPLATADIDLKEAFHRVLRLPAVAEKTFLITIGDRSVTGMVAQDQMVGPWQIPVADCA
                     VTTASLDSYHGEAMSIGERSPVALLDFAASARLAVAESITNIAATNIGDIKRIKLSAN
                     WMSAAGHEGEDAGLYEAVKAVGEELCPELGITIPVGKDSMSMKTTWEENGEQKSVTAP
                     LSLVISAFARVEDVRKTVTPQLRTDKGDTRLLLIDLGEGNNRLGATALAQVYKQLGDK
                     PADVVNVARLKGFFNAMQTLVAQGKLLAYHDRSDGGLITTLAEMAFAGNCGISVEIDR
                     LVDDLAVLFNEELGAVIQVRTEELSEVQAVLNAENLANLTFDIGTAVESDSFEITRNG
                     TTVFSQKRSELRGIWAELTHQMQRLRDNPECADQEFAAKKDPNNKGLSAFLTYDVNED
                     IAAPYINKGVKPSVAILREQGVNSHYEMAAVFDRAGFNAIDVHMSDLISGRRNLNDFN
                     AMVACGGFSYGDVLGAGGGWAKSILFNPMLRDQFSKFFANPNTLALGVCNGCQMVSNL
                     AEIIPGTENWPRFVRNKSERFEARAAMVKINDTNSLWFNGMAGSHMPIAVSHGEGQVE
                     FKNPQQLANLQQQNLVIAQYVDSHLNPTEQYPANPNGSALGITAIGNTDGRVAIMMPH
                     PERVFRAVSNSWCPEDWTEGGAWMRLFRNARVALKY"
     gene            4619..4798
                     /locus_tag="PXE26_002055"
     CDS             4619..4798
                     /locus_tag="PXE26_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594609.1"
                     /translation="MFKEKGYDEFLAEKIRLGLEDMQSGNGLSLDESKARTKQLIERK
                     ARELANFEQENIIYG"
     gene            4791..5078
                     /locus_tag="PXE26_002056"
     CDS             4791..5078
                     /locus_tag="PXE26_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5594610.1"
                     /translation="MAKTLRISSRAQNDIEEILASVIEYTGFESSGIRLQEDIYQKFE
                     TIAYMPSAAGRLREDGTREAFTRRYRIVYTELENEVWIITIIHSSRLYPRI"
     gene            complement(5204..7306)
                     /locus_tag="PXE26_002057"
     CDS             complement(5204..7306)
                     /locus_tag="PXE26_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HDL5594611.1"
                     /translation="MKSFKLLPVSAAVLSVLAANAVAQTASTDAVVLDTVTVTDNQGL
                     KVQSNVVTTKKKDESTQTDLRGLLKDEPAISLGGGNGTSQYLYIRGMGQNSIDVKVDN
                     TYSDSQILYHQGRHMLDPALVKIVSVQKGAGSASAGIGQTNGAVIAKTVDALDLLKNS
                     DKNFGAKLGTGFSTNHAHNFNATLYGKGEIFDALVSGNLVRDRDYKGGKDYVNQFGTN
                     RVPYSALDKTSFLAKLGATLGDHRFVLSHSSERNEGQRLVREEFDVAPNGTKVSPYNR
                     LTVERQAPANRRITVQRTNLEWTGKNLGFAQEATANVYQLVQGRWSENETGNGYAGGV
                     DYATKTKIVTHGANVNFDSALHENVLLKYGVNYRHQEAKPHTKFNPLVKNQEKTDTGV
                     YVEAITAPVDKVTLTTGVRYDHFKFKAMDGKERSNGAFSPSVGLIYEPIEHLSLSASH
                     NYATRSPRLYDALTAHGNRKIVSIGSNTKAEKARNTEIGFNYNNGTFSFDGSYFWQDI
                     KDALGGGRDSHNPNNELIMNLGKIKNRGYELNAGYHNGGFTARIGVAHSKPRFYSPTI
                     WEVNRQTGKREEKPLLSTNPEYASAIGRTWTASLSYRFEQPNLEVGVHHRIVEKVKPE
                     DNFFVTGGTLQTNTGTGKDGYNVTDITLNWKPLKDDSVNVNFAVDNVANKKYNAHGQR
                     GQLSARGREFRAGVNYTF"
BASE COUNT         1953 a         1676 c         1552 g         2197 t
ORIGIN      
        1 attctttcaa atagaattca tgtactttag gaacgccgtt aaatttacgc aaatagcatt
       61 ttgcctgact ctccaaattc tcaattccgt taatgtgatt ttgattgcta actaaaaacc
      121 actttctatt aaggtagaat tgaccgttca aataaatcac gttcattttc tgtataagac
      181 gtaatggggc atttaaaagg gtgaacaggg tccaataaga tttttcaata agtttcccta
      241 tttacgtaag cataaattgt ggggcaaccc acttttgtgg caagaggcta ctgcgtagac
      301 accgtagatg tcaatgcaga aatgataaga aagtacttga aatatcagga aaagcacgaa
      361 ggataaacaa cttcgtttat cagatatata aaaattcggg ttctatgaat tcgaatttta
      421 atcgccccct atgggggcag atcactacga aggtagattt ttaatacttc aacgccactc
      481 tcgcatttct aaacaaccgc atccacgctc caccttccgt ccaatcttct gggcaccaag
      541 agttactgac cgcacggaac acacgttcag ggtgtggcat cataatagcg actcgtccgt
      601 ctgtattacc gatagcggtg atacccaacg ccgatccgtt cgggttggct gggtattgtt
      661 cggttgggtt gaggtggcta tccacatatt gtgcgatcac gagattttgc tgttgcaagt
      721 tcgctaattg ctgtggattt ttgaactcaa cttgtccttc accgtgtgaa accgcaatcg
      781 gcatatggct gcctgccatt ccgttgaacc aaagtgagtt ggtgtcgttg attttcacca
      841 ttgcagcacg ggcttcaaaa cgttcggatt tattacgcac gaagcgtggc cagttttctg
      901 tgcctggaat aatttccgct agattggaga ccatttggca accattacat acccctaatg
      961 ccagcgtgtt cgggttggcg aagaatttgc tgaattggtc acgcagcatt gggttgaaca
     1021 gaatcgattt cgcccagccg ccgcctgcac ctaagacatc gccgtaagag aagcctccgc
     1081 acgccaccat tgcgttgaag tcgttgaggt tgcgtctgcc tgaaatcaag tctgacatat
     1141 gcacgtcaat ggcgttgaaa ccggcacggt caaagacggc tgccatttcg tagtggctgt
     1201 ttacaccttg ctcacgcaaa atcgccacac tcggttttac gcctttgttg atgtatgggg
     1261 cggcgatgtc ttcgttcaca tcgtaagtta aaaatgcgga taagcctttg ttattcgggt
     1321 cttttttcgc tgcaaattct tggtctgcac attcagggtt gtctcgcaaa cgctgcattt
     1381 gatgagtgag ttccgcccaa atgccacgca gttcggaacg tttttggcta aatactgttg
     1441 tgccgttgcg ggtaatttca aagctgtcgc tttcaaccgc tgtaccaata tcaaaggtga
     1501 gatttgcaag attttcggca tttaacaccg cttgcacctc gctcaattct tcggtgcgaa
     1561 cttggattac tgcccccagt tcttcgttga ataacacggc taaatcgtcc accaagcggt
     1621 cgatttccac cgaaattccg caattccctg caaacgccat ttccgccagt gtggtgatta
     1681 aaccaccgtc cgagcggtcg tggtaggcaa gcaattttcc ttgtgcgaca agggtttgca
     1741 ttgcgttgaa gaagcctttt aagcgagcca cattcaccac atcggcaggt ttgtcgccaa
     1801 gttgtttgta aacttgagca agtgcggttg cacccaagcg gttgttgcct tcgcccaggt
     1861 cgatcagcaa caagcgggta tcgcctttgt cggtgcgaag ttgtggggta acggttttac
     1921 gcacatcttc cacacgagcg aaagcggaaa tcacgagcga aagcggagca gtaacagatt
     1981 tctgttcgcc gttttcctcc caagtggttt tcatcgacat tgagtctttg cctaccggaa
     2041 tggttatgcc taattcaggg caaagctctt cgcccaccgc ttttactgcc tcgtaaagcc
     2101 ctgcgtcttc gccctcgtgc cctgccgccg acatccaatt cgccgagagt ttaatgcgtt
     2161 tgatgtcgcc aatgttagtg gcggcaatat tggtgatgct ttctgccacg gcgaggcgag
     2221 ctgaggcagc aaagtcaagc aaagcaacag gtgatcgctc gccaattgac attgcttcac
     2281 cgtgatagct gtctaatgaa gcggtggtta cggcacaatc tgccacagga atttgccacg
     2341 ggccgaccat ctgatcttgt gccaccattc ccgttactga gcgatcgccg atggtaatca
     2401 ggaaggtttt ttcagccacc gcaggcaagc gtagcacacg gtggaacgcc tctttcaagt
     2461 cgatgtcagc ggttgcaagc ggtggatttt tcacagtttt tgacaaaaca tctcgctgca
     2521 tttttggcgt tttgccgagc aacacattca tcggcaaatc aatcggttta ttgtcaaaat
     2581 gagggtcagc aagggttaaa tgcttctctt tcgttgcctc gccaatcacc gcaaatgggg
     2641 ctctttccct ttcgcacaat gctgtgaaaa tgtcgagttt ttcaggggaa acggcaagca
     2701 cataacgctc ttgcgattcg ttacaccaaa tttcaagtgg cgacattcct ttttcatcgc
     2761 acaagatgtt acgcaaatca aacttaccgc cacattcgcc gtcgtgaacc aattcaggca
     2821 tcgcatttga taaaccgcca gcccccacgt cgtgaataaa taaaattggg ttctccgccc
     2881 ccatctgcca gcaacggtcg atcacctctt ggcaacggcg ttccatttca gggttttccc
     2941 gctgaaccga ggcaaaatcc aaatcttctt tcgatttccc cgatgccatt gacgatgccg
     3001 ccccaccgcc taagccgatg ttcattgccg ggccaccaag cacgatcaac ttcgctccca
     3061 ccgggatttc gcctttttga acgtgttcgg cacgaatgtt gccgataccg cctgctaaca
     3121 taatcggctt gtgatagcca cgaatttctt cgcctgcgaa gctgttcact ttttcttcgt
     3181 aagtacggaa gtagcccaat aacgcaggac gaccaaattc attgttaaat gccgctccgc
     3241 ctagtgggcc atcaatcata atatccagtg cggaggcaat gcgattcggc ttggaaagcg
     3301 ggttttccca cggctgttca aattttggga tcactaagtt agagaccgaa aaacccgtca
     3361 agcccgcttt cggtttcgcc ccacgccctg tcgccccttc atcacgaatt tcaccgcccg
     3421 aaccggtcgc cgctcccggg aatggcgaga tggcggttgg gtggttgtga gtttctactt
     3481 tcattaaaat atgagcatct tcttgatgat agcgatattg tccatcttgg tcggggaaga
     3541 aacgcccaac cgttgagccc tccatcaccg ccgcattgtc tttgtaggcg gaaagcacat
     3601 agtccggggt tttctcaaag gtgtttttaa tcatcttaaa cagggatttt tcctgtttta
     3661 ccccatcaat cgtccaatcc gcattaaaaa ttttgtggcg gcaatgctcc gagttggctt
     3721 gggcgaacat atagagttca atatcattgg ggttacgccc aagttgggta aagttttcca
     3781 ccaagtaatc aatttcatcg tccgccaacg ctaaacctaa gttgatattc gcttcttcca
     3841 gtgccttgcg accaccgcct aaaatatcca ccgaagtaaa cggcttcggc tcttgctgag
     3901 cgaaaagctg ttcggcttgg ctttcgttat ccagcaccgt ttccatcata cggtcgtgta
     3961 ataagccttt caacgtcgta agttgacttt cgttcggcgt ttcagaaaat tctaaataat
     4021 atgccgtgcc acgctcaatt cgctctactg ctgccaaacc gcagttatgg gcgatgtcgg
     4081 ttgccttaga cgaccacgag gaaatcgtgc cgatacgagg ggtaacaatc aggcaaaacc
     4141 ctgtcggctc gtcttcttcc agcgttggac cgtagtgcaa taactctttg attttgtttt
     4201 cttcatcggc tacaagcggt cgatttaatg ccacaaaatg caaaaactcc gcataaactg
     4261 attttacagg taattgattt tgttggaatt tttgcagaag ttgttgaatg cgaaaagcag
     4321 ataaggcagg cgagccacgg aaggtttgga ttgtcattct ttggattttc ctatttaaga
     4381 tgaaaaacta aaccgattat aaacgattgc gcaaacgatt gctatatttg tcagacgttt
     4441 gctgttagat acatttattc attagtatca aataaatttg ttcaatacta atgaatacct
     4501 ttcaaagaag gtcccctcta tcaatctgtt ttaaaagata atttaaaaat aagttaattt
     4561 gacaactcaa aattaaaagc agacaatgct tttaattata tcttaatagg agcagattat
     4621 gtttaaagag aaaggctatg atgaattcct agcagaaaaa attcgccttg gcttagaaga
     4681 tatgcaatca ggtaatggtc tttcactcga tgaatcaaaa gcacgaacca aacaactgat
     4741 tgaacgtaaa gcaagagaac tcgcaaactt tgaacaagag aatatcattt atggctaaaa
     4801 cattacgaat tagcagtaga gctcaaaatg atattgaaga aattttagcg agcgtaattg
     4861 aatatactgg ttttgaaagt agtggaattc gcttacaaga agatatttac caaaaatttg
     4921 agactatcgc ttatatgccc tctgcggctg gacgtttaag agaagatggc acaagagaag
     4981 cattcactag gcgttatcgt attgtttata ccgaattaga aaatgaagtg tggattatta
     5041 ccattattca tagtagcaga ctttatccac gcatttaaat aacaaacgac taaaatagtc
     5101 ggttttttat ttgcaaaaaa ttaataaaat atcaccgctt gtaagctcca taaaaaaaag
     5161 cccgattgta acatcgggcg ttttagtctg aatttaagtc agattagaat gtgtagttca
     5221 cacctgcacg gaattcacgt ccacgagctg ataattgacc acgctgaccg tgtgcgttgt
     5281 attttttatt cgccacgtta tccactgcga agtttacatt cacgctatca tctttaagtg
     5341 gtttccagtt taaggtgata tcagttacat tgtagccgtc tttgcctgta ccggtatttg
     5401 tttgtaatgt tccgcccgta acgaagaaat tatcttcagg tttcactttc tcaacaatac
     5461 ggtggtgtac gccaacctct aaatttggtt gttcaaagcg atagcttaaa gaagctgtcc
     5521 aagtacgacc gatagctgag gcgtattctg ggttagtact taataatggt ttttcttccc
     5581 gcttaccagt ttgtctgttt acttcccaaa tagttggtga gtagaaacgc ggtttgctgt
     5641 gtgcaacacc aatacgagca gtaaaaccac cattatggta acctgcattt aactcataac
     5701 cacggttttt aattttacct aggttcataa ttaactcatt attaggatta tggctatcac
     5761 gaccaccacc taatgcatct tttatatctt gccagaaata gctaccatca aaactgaatg
     5821 taccattgtt atagttgaaa ccgatttcag tattacgagc tttctccgct ttagtattgc
     5881 taccaatact aacgattttt ctatttccgt gagccgttag tgcatcgtat aaacgagggc
     5941 tacgagttgc atagttgtgg cttgcactta agcttaaatg ttcaattggc tcatagataa
     6001 gcccaacgct tgggctgaat gcaccattac tacgctcttt accatccatt gctttgaatt
     6061 tgaagtggtc gtaacgtaca ccggtagtta aagttacttt atctactgga gcagtaattg
     6121 cttcaacata cacgccggta tcggttttct cttggttttt cacaagaggg ttaaatttag
     6181 tgtgtggttt agcttcttgg tggcgatagt tcacaccgta ttttaataat acattttcgt
     6241 gaagggcaga atcaaagttt acgtttgcac cgtgggttac tattttagtt ttggttgcat
     6301 aatctacacc accagcataa ccattacctg tttcattctc agaccaacga ccttgtacta
     6361 actgatacac gttagctgtt gcttcttgag caaaacctaa gtttttacca gtccattcta
     6421 agttagttct ttgaaccgta attctacggt tagctggagc ttggcgttct acagttaagc
     6481 ggttgtacgg agaaaccttt gtgccgttag gtgctacatc aaattcttca cgcactaaac
     6541 gctgaccttc atttcgctca cttgaatggc ttaatacaaa acggtgatct cccaatgttg
     6601 cacctaattt agctaaaaag ctggttttat ctagtgcact atacggaaca cggtttgtgc
     6661 cgaattggtt tacgtaatct ttaccgcctt tatagtcgcg atctctcaca agattacctg
     6721 agactaaagc atcaaagatt tcgcctttac catataaggt tgcattgaaa ttgtgagcgt
     6781 ggtttgtgct gaagccagta cctaattttg caccgaagtt tttatcgctg ttttttaata
     6841 aatctaatgc atcaacggtt ttagcaatta ctgcaccatt agtttgacca ataccggctg
     6901 aagcactgcc tgcacctttt tgtacagaaa caattttcac caatgccgga tctaacatat
     6961 gacgaccttg gtgatacaaa atttggctat ctgagtaagt gttatctact tttacatcaa
     7021 ttgagttttg acccatacca cgaatataga gatattgtga tgtaccgtta ccaccaccta
     7081 agctaattgc cggctcatct tttaataaac cacgcaaatc ggtttgggtg ctttcatctt
     7141 ttttcttagt tgttaccaca ttgctttgta cttttaaacc ttgattatct gttacggtaa
     7201 cagtatctaa tactactgca tctgttgaag cagtttgagc cactgcatta gcagcaagta
     7261 cgctcaatac cgcagcagaa acagggagca atttgaagct tttcatttta tttatattcc
     7321 ttaggtaaat tatttaagag gattatctgt ttgatattaa aaataattct caacacca
//
LOCUS       DANLZD010000128         7111 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.128, whole genome shotgun sequence.
ACCESSION   DANLZD010000128 DANLZD010000000
VERSION     DANLZD010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7111)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7111)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7111
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.128"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            19..912
                     /locus_tag="PXE26_002058"
     CDS             19..912
                     /locus_tag="PXE26_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GcvA"
                     /protein_id="HDL5594612.1"
                     /translation="MNKKLPPLNALKAFESAARHLNFTKAAEDLFVTQAAVSHQIKLL
                     EDFLGASLFHRRNRLLELTELGAQYFYEVQPLLEQIALATDKIRQQSSRQILTISVPQ
                     TFGMHWLVPRLADFHEKYPEVEVRIKGVDQDEGLLGKETDVAIYYGKGDWQGLESIRL
                     TESRIVILASPEYLSQNTIHLPADLAGKHLLHSSTHNKWKRMVEHLHIEDIVDAETGS
                     IFSHTFMVLQAAMHQQGIAIANQLLAQHEIEKGTLIEPFPTTLFDEKSFYVVYPSQSA
                     QVQKVQFFVEWIQQKMKECCA"
     gene            988..1671
                     /gene="yjjG"
                     /locus_tag="PXE26_002059"
     CDS             988..1671
                     /gene="yjjG"
                     /locus_tag="PXE26_002059"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HDL5594613.1"
                     /translation="MKYQWVLFDADETLFSFNSYLGLKAMLARYQIDFSEQDYQDFQA
                     VNKPLWVAYQNNEITAQDIQTRRFVKLSAQTGVDPLQLNQELMAEMAFVSQPLEGVMD
                     MLNALYGKVKMGIITNGFTDLQQKRLDNTQTSHFFDIVVISEQIGAAKPDRQVFDYAF
                     ALMDEFDRTKVLMVGDTLASDILGGNNAGIDTCWLNLLSKENDTDIKPTYEVHTMQQI
                     IAIVEGKSL"
     gene            1668..2651
                     /gene="cysB"
                     /locus_tag="PXE26_002060"
     CDS             1668..2651
                     /gene="cysB"
                     /locus_tag="PXE26_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CysB"
                     /protein_id="HDL5594614.1"
                     /translation="MKLQQLRYIVEIVNQNLNITEAAEVLYTSQPGISKQVRLLESEL
                     GINIFERNGKHVKGLTPAGEKIVAIARELLVKAQSIKSVAEEQTRPNKGILRIATTNT
                     QARYMLPSVIEKFKARYPEVSLHLHQGSPNQIYDALVAGEVDLAITTEAQYLFDEAVL
                     LPCYWWNRSVIVKPEHPLAAFVNQSKNLTVEQLGRYDLITYTFGFTGQSDLDHAFNKE
                     GILPNIVFTATDADVIKTYVRLGLGVGIMASMAHTETDKDLVAINASHLFQPSMTQIA
                     FKRGTFLRNYMYDFINYFSPHLTRVQVEKAEQLRDNNAISRLFESISLEEK"
     gene            2652..3296
                     /locus_tag="PXE26_002061"
     CDS             2652..3296
                     /locus_tag="PXE26_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594615.1"
                     /translation="MRIWQKLASVIVVTLGLISNASAENFKLKYSSNYLMPAYINFNN
                     GGGQYNIQAKINVPLYNIVFSAKGTEKNEQFHMLSYRDTRNGKTYAMAEIDSKTVKYG
                     KVKEPLKEEALTMPTYDLFTTAFQLSYYDKLPSSFQTTNGKKLYPTPNVQLRKAQKEV
                     KVGGKTYQEITYKFRTSDKKDITVKKFEGEKFPRYIAYSRDGDNYELTFDSFVK"
     gene            complement(3370..4419)
                     /gene="ansB"
                     /locus_tag="PXE26_002062"
     CDS             complement(3370..4419)
                     /gene="ansB"
                     /locus_tag="PXE26_002062"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 2"
                     /protein_id="HDL5594616.1"
                     /translation="MKIKKLLLPTLLSIATMPIQAADLPNITILATGGTIAGSQKNTA
                     TSAYQAGQLNIETLIEAVPDIKKLANIKGEQIVKIGSQDMSDEVWLKLAKAINQQCPN
                     TDGFVITHGTDTMEETVYFLDMTVKCEKPVVLVGAMRPATEKSADGVLNLYNSVVVAK
                     DSKSSGRGVLVAMNDIVLGARDVTKTSTTSVQTFNSPNFGALGYIHNSKVDYERSPES
                     KHTVNTPFKVDELTELPKVGIIYAYSNMPTEPLQALLDASYQGIVVAGVGNGNMNAAN
                     LALLEEAAKKGITVVRSSRVPTGYTTRDAEIDDSKYGFIASGTLNPQKARVLLQLALT
                     QTNDIKTIQQYFEDF"
     gene            4683..6320
                     /gene="pyrG"
                     /locus_tag="PXE26_002063"
     CDS             4683..6320
                     /gene="pyrG"
                     /locus_tag="PXE26_002063"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HDL5594617.1"
                     /translation="MTTNYIFVTGGVVSSLGKGIAAASLASILEARGLNVTIMKLDPY
                     INVDPGTMSPTQHGEVFVTEDGAETDLDLGHYERFIRSKMSKANNFTSGKIYSEVLRK
                     ERRGDYLGATIQVIPHITNEIKARVLEGGKGRDVAIVEVGGTVGDIESLPFLEALRQL
                     AVDIGREKTLFMHLTLVPYIPTAGEVKTKPTQHSVKELLSIGIQPDVLICRSDRAIPE
                     NEKKKIALFCNVPERAVISLKDVDSIYRIPELLKSQGLDSFVCDRFRLDCKEADLSEW
                     EQVLYCQANPTGEVTIGMVGKYVELPDAYKSVNEALKHAGLTHRLTVNIKYIDSQDIE
                     TKGTELLAGLDGILVPGGFGYRGVEGKIRTAQYARENKIPYLGICLGMQIALIEYARN
                     VAGLTEANSSEFDKDCSQPVIGLITEWQDAEGNVETRSDESDLGGTMRLGSQQCHLIE
                     GSKARELYGAETIVERHRHRYEVNNKLLPQIEAAGLKVSGLSADRKLVEIIEVPNHPW
                     FIAAQFHPEFTSTPRDGHPLFAGFVKAAKDHQESRKA"
     gene            complement(6488..7084)
                     /gene="nfuA"
                     /locus_tag="PXE26_002064"
     CDS             complement(6488..7084)
                     /gene="nfuA"
                     /locus_tag="PXE26_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S biogenesis protein NfuA"
                     /protein_id="HDL5594618.1"
                     /translation="MEEQTIHISISDAAQAHFARLLEQQEEGTNIRIFVVNPGTPGAE
                     CGVSYCPPNAVEETDTEFKFNRFSAFVDDISLPFLDEAEIDYVTDPMGSQLTLKAPNA
                     KMRKVADDAPFIERLDYVIQTQVNPQLASHGGKVTLIEITEDKYAVLQFGGGCNGCSM
                     VDVTLKEGIEKQLLAMFPDELVGVKDITEHQHGEHSYY"
BASE COUNT         2136 a         1298 c         1516 g         2161 t
ORIGIN      
        1 ctattagatt gaaaaattat gaacaaaaaa cttccaccac tcaatgcatt gaaagcattt
       61 gaatctgctg cacgccattt aaattttact aaagcggcag aagatctctt cgtcacacaa
      121 gctgcagtga gccaccaaat taaactatta gaagattttt taggtgcttc cctgttccat
      181 cgccgtaacc gtttgctgga attaactgag ttaggcgcac aatatttcta tgaagttcag
      241 ccattattag aacaaattgc tctcgcaaca gataaaatta ggcagcaaag tagtcgtcaa
      301 attctgacta ttagcgtacc acaaacattt ggtatgcatt ggttagtccc acgtttggcg
      361 gatttccacg aaaaatatcc agaagtggaa gtacgtatta agggtgttga tcaagatgag
      421 ggattattag gtaaagaaac agatgttgct atttattatg gtaaggggga ttggcaaggt
      481 ctggaatcta tccgtttgac ggaatcccgt attgttattt tagcttcgcc tgagtattta
      541 tcgcaaaata ccattcattt accggcggat ttagcaggta agcatttatt acattcctcc
      601 acccataata agtggaaaag aatggttgaa catttgcata tagaagatat agtagatgcg
      661 gaaactggct caatttttag ccatactttt atggtgcttc aagctgcaat gcaccaacaa
      721 ggcattgcga ttgccaacca gttgttggca cagcacgaaa ttgaaaaagg tactttaata
      781 gagcctttcc caaccacatt gtttgatgaa aaatcgttct atgttgtcta tccttcgcaa
      841 tcagcccaag ttcagaaagt acaatttttt gttgagtgga ttcagcaaaa aatgaaagag
      901 tgttgtgctt aagcgtggct ttatcagcgg tatgcgaaaa attagaaaaa tttgaccgct
      961 tgttatctaa gttaaaaaag gaatattatg aaatatcaat gggtattatt tgatgctgat
     1021 gaaaccttgt tttcatttaa ttcttatctt ggtttaaaag cgatgctggc tcgttaccaa
     1081 attgatttta gtgaacaaga ttatcaagac tttcaagcgg taaataaacc actttgggtg
     1141 gcttaccaaa ataatgagat cactgctcaa gatattcaaa ccagacgttt tgtaaaatta
     1201 tctgctcaaa caggcgtaga tccgctacaa cttaatcaag agttaatggc ggagatggca
     1261 ttcgtcagtc agcctttaga aggtgtaatg gatatgttaa atgctttata tggtaaagta
     1321 aaaatgggca ttatcaccaa tggttttacc gatttgcagc aaaaacgttt agataatact
     1381 caaacttcac atttttttga tattgtagtg atatcagaac aaattggtgc cgcaaagcct
     1441 gatcgccaag tgtttgatta cgcttttgca ttaatggacg aatttgatcg tactaaagtg
     1501 cttatggtag gcgataccct cgcttctgat attttaggag gtaataatgc tggaattgat
     1561 acttgttggt taaatttgct tagtaaagag aatgatacgg atattaagcc aacttacgaa
     1621 gtgcatacga tgcaacagat tattgcgatt gtagagggga aatcattatg aagctacaac
     1681 agttacgtta tatcgttgaa atagtaaacc agaacttgaa tattaccgag gccgcagagg
     1741 tgctttacac ttctcaaccg gggattagca aacaagttcg tttgttggaa agtgagttgg
     1801 gaattaatat ttttgagcgt aacggtaagc acgttaaggg gctaacgcct gctggtgaaa
     1861 aaattgtggc gattgctcgt gaattattgg taaaagccca gagcattaaa tcggttgctg
     1921 aagaacaaac tcgacccaac aaaggcatct tacgcattgc gaccaccaat acccaagccc
     1981 gttatatgct accgagtgta attgagaagt ttaaggctcg ctatcctgaa gtaagtttgc
     2041 atttgcacca aggctccccg aatcaaattt atgatgcttt ggtggctgga gaagtggatt
     2101 tagccattac cacagaagct caatatttat ttgatgaagc ggttttattg ccgtgttatt
     2161 ggtggaatcg ttcagttatt gtcaaaccag agcatcctct tgcggctttt gtgaaccaaa
     2221 gtaaaaattt gactgtcgaa caattaggta gatatgattt gataacctat acttttggtt
     2281 ttacagggca atcggattta gatcatgcct tcaataagga aggtattttg cctaatatcg
     2341 tatttacggc gacagatgct gatgtaatca aaacttatgt acgcttaggc ttaggggttg
     2401 gtattatggc atcaatggca catacggaaa cggataaaga cttagtcgct atcaatgcaa
     2461 gtcacctgtt tcaaccgagt atgacgcaaa tcgcctttaa acgaggaact tttcttcgta
     2521 actatatgta tgattttatt aattattttt cgccacattt aacacgggta caagtggaga
     2581 aagcggaaca attacgagat aacaatgcaa tttcaaggtt gttcgaaagt atatctttag
     2641 aggagaaata gatgagaatt tggcagaagt tagcgagcgt aatcgtggtc actttgggct
     2701 tgatttcaaa cgccagtgcg gagaatttta agttgaaata cagctcaaat tatttaatgc
     2761 cagcctacat taactttaat aacggtggtg gccaatataa tattcaggca aaaattaatg
     2821 tgcctttata taatattgtc ttttctgcga agggaacaga aaaaaacgaa caatttcata
     2881 tgttgagcta ccgagatacc cgtaacggca aaacttatgc gatggcagaa attgattcta
     2941 aaacggtaaa atatggcaaa gtgaaagagc cactaaaaga agaagcgctg actatgccaa
     3001 cttatgattt gttcaccaca gcctttcagt tgagctatta cgataaatta ccgagcagtt
     3061 ttcaaactac taacggtaaa aaactttacc caacaccgaa tgtgcagcta cgcaaagccc
     3121 aaaaagaggt aaaagtaggc ggcaaaacct accaagaaat tacctacaag tttagaacca
     3181 gtgataaaaa agacattacg gtgaaaaaat ttgaaggtga aaaattccct cgctatatcg
     3241 cctatagtcg tgatggcgac aattatgagc taacttttga tagctttgta aaataataaa
     3301 gattagtaat gagacaagcg gtctattttg tgatttgttt tgcaaaatag accgcttgtt
     3361 atttactttt tagaaatctt caaaatattg ttgaatagtt tttatatcat ttgtttgtgt
     3421 taaggcgagc tgcagtaata ctcgagcttt ttgaggattt aatgtgccgg aagcaataaa
     3481 accatacttg ctatcatcaa tttctgcatc tcgggtagta tatccggttg gcactcgaga
     3541 cgagcgaacc acggtaattc cttttttagc tgcttcttca agtaaagcca aattagccgc
     3601 attcatattg ccattgccaa ctcctgcaac cacgatgcct tgataactcg catctaataa
     3661 tgcttgaagc ggttcggttg gcatatttga ataagcataa ataatgccga cttttggcaa
     3721 ttccgttaat tcatctactt tgaaaggggt gtttacggtg tgtttacttt caggagagcg
     3781 ctcataatca actttgctat tatggatata gcctagtgcg ccaaagtttg gtgagttaaa
     3841 tgtttgcact gatgtagtac tggtttttgt aacatcgcga gcgcccaata caatatcatt
     3901 cattgcaacc aacacccctc tgccactaga tttagaatct ttggcgacaa caactgagtt
     3961 atataaattt aatacgccgt cggcactttt ttcagttgct ggtcgcatgg cccccactaa
     4021 tactacgggt ttttcgcatt ttacagtcat atcaaggaag tatacggttt cctccatagt
     4081 gtctgtgccg tgcgtaataa cgaagccatc tgtgtttggg cattgttgat taattgcttt
     4141 tgccagtttt agccatactt catcagacat atcctgagat ccgattttaa cgatttgttc
     4201 tcctttgata tttgctaatt ttttaatatc cgggacggct tctatgagtg tttcaatatt
     4261 tagctgccca gcttgataag ctgaggttgc cgtatttttt tggctaccgg caattgtccc
     4321 tccagttgca agaattgtaa tattaggtag gtcggctgct tgaattggca tagtagcaat
     4381 gcttaacaga gttggcagta gtaatttttt gattttcatt gtatcgtctc cagtattaga
     4441 aaaacaggta ttatgatatc tataaacatg taggttaatt ctgatctatc gcaaataata
     4501 gtgtattaat taagattagt cggcattatt gaaaaaagaa ttaatctgac tgcttgccga
     4561 ttttccatta gcaaaaaaat gtaatttgat gtaaactact ttcccgtcct gatagtttct
     4621 tttttacgaa gtaaactgat attctgaatt tccaacctaa tcaatcagca aaggcaatca
     4681 caatgacaac gaattatatt ttcgtcacag gcggtgttgt atcttcttta gggaagggta
     4741 ttgcggcagc ctctttagca tctattctgg aagctcgtgg tttaaatgta accattatga
     4801 agcttgatcc ttatatcaat gtcgatccgg gtacaatgag tccaactcag cacggggagg
     4861 tatttgtgac cgaagacggt gcggaaaccg atttggattt aggtcactac gagcgtttta
     4921 tccgttcaaa aatgagcaaa gccaacaact ttaccagcgg taaaatttac tctgaagtgt
     4981 tgcgtaaaga acgccgtggc gactatttag gtgcaaccat tcaggttatt ccgcatatta
     5041 ccaacgagat taaagcccgt gtgttagaag gcggtaaagg gcgtgatgtc gccattgtag
     5101 aagtaggtgg cacggtgggg gatattgaat cactgccatt cttagaagca ctccgccaat
     5161 tagcggtgga tatcggtcgt gaaaaaacct tgtttatgca tttaacctta gtgccttata
     5221 ttccaaccgc aggggaagtg aaaactaagc cgactcagca ttcagtaaaa gagttgcttt
     5281 caatcggtat tcagccggat gtgttaattt gccgttcaga tcgtgctatt ccggaaaatg
     5341 agaagaaaaa aatcgccctt ttctgtaatg tgccggagcg tgcggttatt tcgcttaaag
     5401 atgtagattc gatttatcgc attccggaat tattgaaatc gcaagggtta gattcctttg
     5461 tgtgcgatcg tttccgttta gattgcaaag aagccgatct ttcagagtgg gaacaagtgc
     5521 tatactgcca agcaaaccca accggcgaag tgactatcgg tatggtcgga aaatatgtgg
     5581 aattacctga tgcgtataaa tcggtgaatg aggctttgaa acacgcaggt ttaacgcatc
     5641 gtttaacagt gaatattaaa tacattgatt cacaagatat tgaaaccaaa ggcacagagt
     5701 tattggcagg cttagacggc attcttgtgc cgggcggctt tggctatcgt ggcgtggaag
     5761 gcaaaattcg aaccgcacaa tatgcccgtg aaaacaagat tccttactta ggtatctgtt
     5821 taggtatgca gatcgcccta attgaatatg cccgtaatgt ggcaggttta accgaggcaa
     5881 attcttctga atttgataaa gattgctcac agccggtgat tggcttaatt accgaatggc
     5941 aagatgcgga agggaatgtg gaaacccgca gcgatgagtc agatttaggt ggtacaatgc
     6001 gtttaggctc acaacaatgc catttaattg aaggctcaaa agctcgtgag ttatatggtg
     6061 cggaaacgat tgttgaacgt catcgccacc gttacgaagt aaacaataag ctgttaccac
     6121 aaattgaagc ggcaggctta aaagtgagcg gtttatcggc agatcgtaaa ttagtggaaa
     6181 ttattgaagt gccaaatcac ccttggttta tagcagcaca attccatccg gaatttacct
     6241 caactccgcg tgatggtcat ccattatttg caggttttgt gaaagctgcg aaagatcacc
     6301 aagagagtcg taaggcttaa tcaaacttaa caagcggtcg aatttactca tttttttgta
     6361 caaacgcttg cgtttgaaca tcggctttgc tgatggcacg aagtgcgagc gaaagcgagt
     6421 aaatttgacc gcttgctcat taattataag aaagggataa atcaatgatt tatccctttt
     6481 agtattttta atagtaagaa tgttcaccgt gttggtgttc ggtaatatct ttcacaccaa
     6541 ctaattcatc agggaacatt gccagaagct gtttctcaat tccctctttt aaggtcacat
     6601 ccaccattga gcaaccgtta caaccaccgc cgaattgtag cacggcatat ttatcttcgg
     6661 tgatttcaat taaggtcact ttaccgccgt ggctggcaag ttgtggattg acttgggttt
     6721 gaatcacata atctaaacgc tcgataaacg gtgcatcatc agccacttta cgcattttgg
     6781 cgttaggggc tttgagggta agttgtgaac ccattgggtc ggttacataa tcaatttccg
     6841 cttcgtctaa aaacggtaag ctaatatcat cgacaaatgc agagaaacgg ttaaatttaa
     6901 attcggtatc cgtctcttca actgcattgg gtgggcagta agagacaccg cattctgccc
     6961 ccggtgtgcc gggattgacc acaaaaatac ggatattagt tccctcttct tgctgttcta
     7021 atagtctggc aaaatgggct tgtgctgcat ctgatattga aatatgaatg gtttgttctt
     7081 ccatttaaat tatcctgttt tttaatattt t
//
LOCUS       DANLZD010000129         7062 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.129, whole genome shotgun sequence.
ACCESSION   DANLZD010000129 DANLZD010000000
VERSION     DANLZD010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7062)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7062)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7062
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.129"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            372..1016
                     /gene="rppH"
                     /locus_tag="PXE26_002065"
     CDS             372..1016
                     /gene="rppH"
                     /locus_tag="PXE26_002065"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HDL5594619.1"
                     /translation="MIDFDGYRPNVGIVICNKHGQVLWAKRFGQNSWQFPQGGINEGE
                     NIEAAMYRELYEEVGLSKKDVRLLWASKYWLKYKLPKRLVRNEGSGPVCIGQKQRWFL
                     LQLIGDESLINLKTTKNPEFDGWRWVSFWYPVRQVVSFKRDVYRKAMKEFAQVLQNNI
                     QKATDDKTGEKPRIERGETSPHTYKKTSQDSAKAYKREARKPYRPWHQHNQKGK"
     gene            1018..1806
                     /locus_tag="PXE26_002066"
     CDS             1018..1806
                     /locus_tag="PXE26_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDL5594620.1"
                     /translation="MTILLSCLFLGVFVGFLAGLFGIGGGLIIVPSLVFLLPMAGVPP
                     EYIMSTALGTSFSTIIITAFASAQRHHKLGNVDIQTSKYFIPALMVSVFLSGLVVSRL
                     DPQLMSRIFAVMVLYLAGKMIFSIKRAPKNKPLTVQTTIIGGSIIGALASMAGIAGGA
                     FIVPFLNDRGLEMKRAIGTSSFCGAFLGLSGTISFIVSGWGLEGMPDYSLGYVYLPAL
                     FGITATSFFTSKMGASAANALPVPMLKKAFAVLLVCIAINMFLK"
     gene            1814..2611
                     /gene="lgt"
                     /locus_tag="PXE26_002067"
     CDS             1814..2611
                     /gene="lgt"
                     /locus_tag="PXE26_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HDL5594621.1"
                     /translation="MNEQFIQFPQISPIVFEIGPIALRWYGLMYLAGFAFAYWLGMRR
                     AKNSNGVWTTEQVDSLVYTCFWGVVLGGRIGDVFFYSFDRFLQDPLYLFRIWEGGMSF
                     HGGLIGVIVAMIWVSYRQKRNFWQTADFIAPLVPFGLGMGRIGNFINDELWGRVTDVP
                     WAVLFPSGGYLPRHPSQLYEAFLEGVVLLFILNWFIQKPRPAGAVSGLFLIGYGTFRF
                     IVEYFREIDHNVNTTADLITRGQLLSLPMIIGGILIMAWAYKVNKVK"
     gene            2698..3366
                     /locus_tag="PXE26_002068"
     CDS             2698..3366
                     /locus_tag="PXE26_002068"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HDL5594622.1"
                     /translation="MSKKYKVIGFDLDGTLINTLPDLTLVANSMFLEAGLPTVTQEKV
                     LTWIGKGADIFFQNAVAHTGRIFQADELVKMRVSFDKYYATYVCEESTLFPNVKETLE
                     ILKANDYPLVVITNKPTKLVEPVLSAFGIYHLFDETLGGQSLPKIKPHPDPMFFICEK
                     FGITPSELLFVGDSENDVIAAKAAGCDVVGLTYGYNYNVPIEQSNPTFVTSEFKDVLK
                     IVGL"
     gene            3436..3696
                     /locus_tag="PXE26_002069"
     CDS             3436..3696
                     /locus_tag="PXE26_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HDL5594623.1"
                     /translation="MPTIALRQVGGSVAMVIPPAFLEALKLSVGSKVDLSLNDNQLVI
                     NPARPKVKYSLEELLRQSDFEAARNEESQSWLSEPAIGKEIL"
     gene            3693..4025
                     /locus_tag="PXE26_002070"
     CDS             3693..4025
                     /locus_tag="PXE26_002070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HDL5594624.1"
                     /translation="MKRGDIYWLDLDPTLGHEQSGFRPVVIVSATAFNLASKLPVVVP
                     ITNGGAFAERLGFAVSLKDAGLKTTGIIRCDQPRTVDIAQRHGKFIEALPESLLDEIM
                     ARVSVIFE"
     gene            4152..5183
                     /gene="trpS"
                     /locus_tag="PXE26_002071"
     CDS             4152..5183
                     /gene="trpS"
                     /locus_tag="PXE26_002071"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HDL5594625.1"
                     /translation="MSKPIVFSGVQPSGELTIGNYLGALRNWVKMQDDYDCVYCIVDQ
                     HAITVRQDPESLRKSTLDVLALYLACGIDPNKSTIFIQSHVPEHAQLAWVLNCYTYFG
                     EMGRMTQFKDKSARYEENVNVGLFTYPVLMAADILLYQANQVPVGDDQKQHLEITRDI
                     ANRFNALYGKKDSEGNLIEPVFAVPEVFIAKSGARVMSLLEPTKKMSKSDDNRNNVIG
                     LLEDPKAVAKKIKRAMTDGDEPPVVRYDVQNKAGVSNLLDILSAITGKTIAELETEFE
                     GKMYGHLKTEVADKVSELLTNLQERYHHYRQDEALLEKIYREGAEKARAQAKATLDKV
                     YELVGFVRY"
     gene            complement(5247..6002)
                     /locus_tag="PXE26_002072"
     CDS             complement(5247..6002)
                     /locus_tag="PXE26_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDL5594626.1"
                     /translation="MKFIKKLSYSVFLATVITACATTESINQEAAQSYAQVKTQARQQ
                     NAIDNSSATAKRIHTVFHKMKPYAERANQTGVPFHWEITVLKSDELNAWAMPGGKMAF
                     YTGLVERLNLSNDEIAVVMGHEMAHALKEHGKSDRTVSAITSIVGAIADVAVTASTGV
                     STEGLLSTGVDLIATKPFSRSQETEADEVGLILMAESGYNPSAAPNVWVKMSKANGDS
                     GLSIFSTHPSNADRQENLARLVPEAMKIYNARK"
     gene            complement(6058..6585)
                     /gene="ppa"
                     /locus_tag="PXE26_002073"
     CDS             complement(6058..6585)
                     /gene="ppa"
                     /locus_tag="PXE26_002073"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HDL5594627.1"
                     /translation="MGLELVPAGKELPDDIYVVIEIPANSDPIKYEVDKETGALFVDR
                     FMATAMFYPANYGYVNNTLSSDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGG
                     DAKVVAVPHTKLSKEYDHIKDVGDLPALLKAQIQHFFESYKALEAGKWVKVEGWGDVN
                     EARQEILESFERAKK"
     gene            6802..6877
                     /locus_tag="PXE26_002074"
     tRNA            6802..6877
                     /locus_tag="PXE26_002074"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6835..6837,aa:Lys,seq:ttt)
     gene            6900..6975
                     /locus_tag="PXE26_002075"
     tRNA            6900..6975
                     /locus_tag="PXE26_002075"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6933..6935,aa:Lys,seq:ttt)
     gene            7005..7062
                     /locus_tag="PXE26_002076"
     tRNA            7005..7062
                     /locus_tag="PXE26_002076"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7030..7032,aa:Lys,seq:ttt)
BASE COUNT         1983 a         1516 c         1507 g         2056 t
ORIGIN      
        1 agttattcac gcctaatttg aaaaactatc acatctttat ccacaaatgg tggggataac
       61 tctgctttat ttgcgaagca aaaattgccc tgcttattca ttttaaaatt taaacttatt
      121 ttgacgagaa aaaacgcaac aacttgatct ttatccagat cattgcttaa gaaaaagatc
      181 gcatttttag atctgattaa ttgctctgtt ttacaacgtt ccgcctgttt atcctcaact
      241 tataccactt atattcaata gttatccaca aagttattca caagcggtta tattttatgg
      301 tttttttgca aatcaaccca aagtatgaaa caattctccc attctagaat ttttatcaat
      361 taggtggtcg agtgatcgat ttcgatggct accgcccaaa tgttggaatc gttatctgta
      421 ataagcacgg gcaagttctg tgggcaaaac ggtttggtca aaactcttgg caatttccgc
      481 aaggtggaat taatgagggg gaaaacattg aagcagcaat gtaccgtgag ctttatgaag
      541 aggtcggctt aagtaaaaaa gatgtacgat tgctttgggc gtctaaatat tggctaaaat
      601 ataaactgcc aaaacgcttg gtacgtaatg aaggctctgg tcctgtctgt atcgggcaaa
      661 aacagcgttg gtttctactg caattaatcg gtgatgaaag cctgattaat ttgaaaacca
      721 cgaaaaatcc ggagtttgac ggctggcgtt gggtcagctt ttggtatcca gtccgccaag
      781 tggtctcttt taaacgagat gtttatcgca aagcgatgaa agagtttgca caggttttgc
      841 aaaacaatat tcaaaaagcg actgacgata aaaccggtga gaaaccacgc attgagcgtg
      901 gcgagacttc gccccatact tataaaaaaa cctctcagga ttctgccaaa gcctataaac
      961 gagaagctcg taagccttat cgtccttggc atcaacataa tcaaaaagga aaataagatg
     1021 actattttat taagctgcct ttttttaggg gtgtttgtcg gctttttagc cggcttgttc
     1081 ggcattggtg gtgggttaat catcgtgccg agtttggtct tcctactgcc catggcaggt
     1141 gtaccgccgg aatatataat gtccaccgca ctcggcacat cattttcaac cattattatt
     1201 accgcctttg catcggcaca acgccatcat aagttaggca atgtcgatat ccaaaccagt
     1261 aaatatttta ttccagcgtt gatggtttcg gtttttctat cgggcttggt ggtaagccgc
     1321 ctcgatccgc aactgatgtc tagaattttt gcggtaatgg tactttacct tgcaggtaaa
     1381 atgatttttt caataaaaag agcaccgaaa aataaaccac ttaccgttca aacgacgata
     1441 atcggaggtt caatcatcgg tgcgttagcc agtatggcag ggatcgcagg tggagccttt
     1501 attgtaccat ttttaaacga tcgaggctta gaaatgaaac gtgccatcgg cacttcctca
     1561 ttttgcggag catttttagg tttatctggc acaatcagct ttattgtaag tggctggggc
     1621 ttagaaggaa tgcctgatta ttctctcggt tatgtttatt taccggctct gtttggtatt
     1681 acggcaactt catttttcac ctcaaaaatg ggggcaagtg ccgccaacgc tctacctgtg
     1741 ccgatgctga aaaaagcctt tgcggtgctt ttggtctgta tcgccatcaa tatgttttta
     1801 aaataaggac actatgaacg aacaatttat ccaatttcca caaattagcc cgattgtgtt
     1861 tgaaatcggt ccgattgccc tgcgttggta tgggctaatg tatttagccg gctttgcctt
     1921 tgcctactgg ctgggaatga gacgggcgaa aaattccaat ggagtttgga caaccgagca
     1981 agtggatagc ttagtctata cttgcttctg gggcgtagta ttaggtgggc gtatcggcga
     2041 tgtgttcttt tatagcttcg accgtttctt acaagatccg ctctacctct ttcgcatttg
     2101 ggaaggcgga atgtcctttc acggcggttt aatcggcgtc attgtagcaa tgatttgggt
     2161 ttcctaccgc caaaaacgca atttctggca gacagcagat tttatcgcac cgctagtacc
     2221 gttcgggcta ggtatggggc gtatcggcaa tttcattaac gatgaacttt gggggcgtgt
     2281 aaccgatgtg ccttgggcgg tgttatttcc aagcggtggc tatcttcccc gccacccgtc
     2341 acagctttat gaagcctttt tagagggtgt ggtgttactc tttatcctca actggtttat
     2401 tcaaaagcct cgcccggcag gtgcggtttc agggttattt ttaatcggct acggcacatt
     2461 ccgctttatt gtggaatact tccgagaaat cgaccataac gtcaatacca ccgcagattt
     2521 aatcactcgt gggcaactac tctctttacc gatgattatc ggcggcatac tgattatggc
     2581 gtgggcgtat aaagtaaaca aagtgaaata aacgtagggg caagtcaata tttgccctca
     2641 ttacaaaaat tgcaaaaaat ttgcagaaaa cgaccgcttg tgtttgaagg atatactatg
     2701 agtaaaaaat acaaagtcat cggtttcgac ttagacggaa cgctaatcaa caccctcccc
     2761 gatctcactc ttgtcgccaa ttcaatgttt ctagaagccg gtttgccaac ggttacacaa
     2821 gaaaaagtgc tgacttggat cggtaaaggg gcagatattt tcttccaaaa tgcggttgct
     2881 cacaccggca gaattttcca agccgatgag ttggtgaaaa tgcgagtgag ctttgataaa
     2941 tactacgcca cctatgtgtg cgaggaaagc acccttttcc caaatgtgaa agaaacctta
     3001 gaaatcctca aagcaaacga ctacccgctg gtggtgatta ccaacaaacc gaccaaatta
     3061 gtcgagccgg tgctttccgc tttcggcatt tatcatttat tcgatgaaac ccttggtggg
     3121 caatcgctcc ccaaaatcaa accgcaccct gacccgatgt tttttatctg cgaaaaattc
     3181 ggcattaccc catcagaatt actttttgtc ggcgactcag aaaatgacgt gattgccgcc
     3241 aaagccgccg gttgtgatgt ggttggacta acttacggct ataactacaa tgtgccgatt
     3301 gaacaatcta acccgacttt tgtgacatct gaatttaaag atgtgttgaa aattgtgggg
     3361 ttataaagaa aacatttgtt ttcttttgat gtttgcttta gactttccga acctaaagat
     3421 ttaaaggagt aaagtatgcc aacaatcgca ttacgtcagg tcggtggctc ggttgcaatg
     3481 gtgattccgc ctgctttttt agaggcactc aagctctccg tcggtagcaa agtggatttg
     3541 tctttaaacg acaaccaact cgtgattaat cctgcccgcc caaaagtgaa atacagctta
     3601 gaggaattat taagacaatc cgattttgag gcagcaagga atgaagaaag ccaatcgtgg
     3661 ttatccgagc cggcaatagg aaaagaaatt ttatgaaacg tggcgatatt tactggctcg
     3721 atcttgatcc aaccttagga cacgaacaat caggcttccg ccccgttgta attgtttccg
     3781 caactgcatt taatctagcc agtaaactgc ctgtggttgt gccgattact aacggtggag
     3841 cttttgctga aagactgggc tttgccgttt cattaaaaga tgccggctta aaaacaacag
     3901 ggattattcg atgcgatcaa cctcgcacag tcgatattgc acaacgccat ggaaaattta
     3961 tcgaagcctt acccgaaagc ctacttgatg aaattatggc aagggtttca gtgatttttg
     4021 agtaagatac aagcggtctg atttgctcta ttttttgcaa aatcatcaat aaatctgacc
     4081 gcttgtactt ttatcccttc ccaataaccg ttaagataac ctatattttt caaatcaaac
     4141 gagaagataa aatgagcaaa cctattgtat ttagtggcgt gcagccctca ggtgaattga
     4201 ctatcggtaa ctacttaggg gcgttacgca actgggtgaa aatgcaagat gattatgact
     4261 gtgtatattg cattgtcgat caacacgcca ttaccgttcg tcaagatccg gagtcgctac
     4321 gcaaatcaac tttagatgtg ttagccctgt atttagcttg tggcattgat ccaaacaaaa
     4381 gcactatttt tattcaatcc cacgtgccgg aacacgccca attagcttgg gtgctgaact
     4441 gttacaccta tttcggtgaa atggggcgta tgacgcaatt taaagataaa tcagcacgct
     4501 atgaagagaa tgtcaatgtg ggcttattta cttatccggt attaatggcg gcagatattc
     4561 tgctttacca agccaaccaa gtgccggtag gcgatgacca aaaacaacat ttggaaatca
     4621 cccgtgacat tgccaaccgt ttcaatgcct tatacggcaa aaaagattcc gaaggcaacc
     4681 tgatcgagcc tgtttttgca gtgccggaag tctttattgc gaaatccggg gcaagagtga
     4741 tgtcgctact tgagccgacc aaaaaaatgt caaaatcgga cgataatcgt aacaatgtga
     4801 ttggactatt ggaagatccg aaagcggtag cgaagaaaat caaacgggca atgaccgatg
     4861 gcgatgaacc gccagtagtg cgttatgacg tacagaataa agccggtgtc tcgaatttat
     4921 tggatattct ctccgccatt accggcaaaa ccattgccga attagaaacc gaatttgaag
     4981 gcaaaatgta tggtcatttg aaaacagaag tagcagataa ggtttccgaa ctattaacca
     5041 atctgcaaga acgttatcac cactaccgcc aagatgaagc attattggaa aaaatctacc
     5101 gtgaaggggc agaaaaagct cgagctcaag ccaaagcaac gttagataag gtatatgaat
     5161 tagtcggttt tgtgcgttac taacacttaa tgaaaaatgc tcttgaggat tcaagagcat
     5221 ttttgcaaaa aagaaccgat tgtcaattat ttacgggcgt tataaatctt cattgcttcc
     5281 ggcacaaggc gggctaagtt ttcttgacgg tcagcatttg atgggtgagt tgagaaaatg
     5341 gacaagcctg aatcgccatt ggctttactc atttttaccc aaacattcgg cgctgctgat
     5401 gggttgtagc ctgattctgc cattaaaatt aacccaactt cgtccgcctc agtctcttgg
     5461 ctgcgagaga atggcttggt ggcaatcaaa tccacgccag tgctgagtaa accttcggtg
     5521 cttacgcctg ttgaggcagt cacagccaca tctgcaatag cacctacaat actggtaata
     5581 gcgctaaccg tacggtctga tttaccgtgt tctttcagtg cgtgagccat ctcgtgtccc
     5641 attaccactg caatttcatc gttcgataaa ttaagtcttt ccactaaccc cgtgtaaaac
     5701 gccattttac cgcccggcat cgcccacgca ttgagttcat ccgatttcaa tacggtaatt
     5761 tcccaatgaa aaggtacacc agtctggttg gctctttccg cataaggctt cattttatga
     5821 aaaacagtgt gaatccgctt agcggtggca gacgaattgt caatcgcatt ttgctgacga
     5881 gcttgggttt tcacttgagc ataactttga gccgcttctt ggttaatgct ttctgttgtg
     5941 gcacaagcgg taatcactgt tgctaaaaaa actgaataac ttaatttttt gatgaatttc
     6001 attttatatc ccacaaaaaa tgccaaacaa atttgcttgg cattcaaaaa taaataatta
     6061 tttcttagca cgctcgaatg attctaagat ttcttggcga gcttcgttta catcgcccca
     6121 accttctact ttcacccatt tgcccgcttc taatgcttta tagctttcga agaagtgctg
     6181 gatttgtgct tttaataacg ccggtaagtc acctacatct ttgatgtggt catactcttt
     6241 acttaatttg gtgtgtggaa cagcaaccac ttttgcatca ccgccggctt catcggtcat
     6301 ttttaacaca ccgacaggac ggcaacgaat caccgaaccc ggttgtaacg gatatggtgt
     6361 tggcactaat acatcaaccg ggtcaccgtc tgatgataag gtgttattca cataaccata
     6421 gtttgccgga tagaacattg cggttgccat aaagcgatcc acaaataatg ccccggtttc
     6481 tttgtccact tcatatttga ttggatcaga gtttgccgga atttcaatta caacataaat
     6541 atcgtccggt aattctttac cggcaggaac taattctaag cccattttgg tttccttcta
     6601 taataggtga aataaacggc gtgattatag cctattttca gaaaaagata aaagcccgtt
     6661 tctcttttca ttttccgcca acaaatccgg ctaatttttt gctaaattgc ttacaaaccg
     6721 cacactcaac catttttcga taaaaaaaac ttgccaaagt tttaaaaatc cgtaagatat
     6781 gccctcgtta cgcaagatta tgggtcatta gctcagccgg tagagcagcg gacttttaat
     6841 ccgttggtcg aaggttcgaa tccttcatga cccaccatta atcttcaaaa cacctctaag
     6901 ggtcattagc tcagtcggta gagcagcgga cttttaatcc gttggtcgaa ggttcgaatc
     6961 cttcatgacc caccattaat ttcaaaactc ctctgagggt cattagctca gtcggtagag
     7021 cagcggactt ttaatccgtt ggtcgaaggt tcgaatcctt ca
//
LOCUS       DANLZD010000130         6807 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.130, whole genome shotgun sequence.
ACCESSION   DANLZD010000130 DANLZD010000000
VERSION     DANLZD010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6807
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.130"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            263..961
                     /gene="aphA"
                     /locus_tag="PXE26_002077"
     CDS             263..961
                     /gene="aphA"
                     /locus_tag="PXE26_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid phosphatase AphA"
                     /protein_id="HDL5594628.1"
                     /translation="MTAATMFASLIAFSAQAGGPKVAYTQPGIDMRTHEAQQAPIHWV
                     SIEQIKESIKDLPPMAVSFDIDDTVAATSGCFHYGKQKYSPDDFSYLKNQDFWDEINA
                     GCDKYSLPKQVAINLIKMHQERGDQVYLITGRTAGKNEQVTTIMQKYLGIKNMQPVNF
                     MGGKAHSTKYDKTPAIIEHKVQIHYGDSDDDILAAREAGIRGIRILRAANSNYTPFPQ
                     AGGYGEEVVVNSSY"
     gene            1142..1903
                     /gene="udp"
                     /locus_tag="PXE26_002078"
     CDS             1142..1903
                     /gene="udp"
                     /locus_tag="PXE26_002078"
                     /EC_number="2.4.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine phosphorylase"
                     /protein_id="HDL5594629.1"
                     /translation="MSEVFHLGLTKAMLKGAKIAIVPGDPARSERIAKKMDNPEFLAS
                     TREFTSWLGYLDGEPVVVCSTGIGGPSVSICVEELAQLGVRTFLRIGTTGAIQEHINV
                     GDILITTGAVRLDGASQHFAPMEYPAVANFECTNALYAAAVESGVTPYVGITASSDTF
                     YPGQERYDTFTGKIYRHFQGSLKQWQDLNVMNFEMESATLFTMCSALGLRAGMVAGVI
                     VNRTQQEIPNEATIHDTEHKAVSVVVEAARKLIKG"
     gene            1978..2574
                     /locus_tag="PXE26_002079"
     CDS             1978..2574
                     /locus_tag="PXE26_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594630.1"
                     /translation="MKKWLMLITLIFGITACFSSLEFDESKQEKINSFLIVGNKLYVV
                     GELHDYEFEHQQVAELNNFLKSLIANKIKSVEANFEVKESKKVEGSYRIILDGKSLTE
                     SERSTVMDTFHFNSAQNPSITYQAEGNLVKLANREELLQKFRFKQALEANVRYYKMKS
                     GLQNTAEGALSIVMLPVAVVAVLPFYMFWVGACATYGC"
     gene            2585..3070
                     /locus_tag="PXE26_002080"
     CDS             2585..3070
                     /locus_tag="PXE26_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HDL5594631.1"
                     /translation="MYSLYLKILSECDWCCDPKTLSTYQQEWLLHEGSLTQKLYDVAT
                     NFNVEVVQEKWIAKNSEKTTACNEDVWSREVLLKDGEKNWIFAQTLVPRSTIENIAQN
                     VLELGNQPIGLWLFSQNPTRTKLEWTQTENGLFARRGVYEIRGYSLEIRELFLETFPY
                     L"
     gene            complement(3108..3977)
                     /locus_tag="PXE26_002081"
     CDS             complement(3108..3977)
                     /locus_tag="PXE26_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDL5594632.1"
                     /translation="MKNINTQAVGWIGLGQMGEPMAKHLLNSGVNVGVYNRDPAKAEK
                     VVEAGGTLYPSVLELVKAYDVIFLMIADYAAVQQVLSDEVLAELNGKVVVNMSTISPS
                     QNQAVEALLAQHGAEFVEAPVSGSSKVAEAGKLLVLAAGKEETVELLKPLFAAFSTTT
                     FYYGEVGKAGGIKLMINSLLGIFIQAYGEALNFADQYGIPKEKVIEMISGSFMNSPIF
                     QAKVPMYQANEFPPAFMMKHMTKDFNLASEEIAKLGKSYPLIEQATKTYNQANDSGLS
                     EVDMAAIYQFLAK"
     gene            4107..4898
                     /locus_tag="PXE26_002082"
     CDS             4107..4898
                     /locus_tag="PXE26_002082"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HDL5594633.1"
                     /translation="MKPTILLYDSGMGGLTIYDEIRKVLPHAHYLYCFDNAFFPYSEK
                     SEAVLIERAVKIVQKIAEKQPLDMVVVACNTASTVVLPALREHFNFPIVGTVPAIKPA
                     AAISETKVIGLLATKGTVARPYVDELIRKYAQDCTVEKIGTTDLVEIVEEKQRSGKVD
                     MNRLQKVVEAWQGKPELDTVILGCTHFPLVKAELQQLLPDVKYFVDPGVGIAKRVLSL
                     LEERKFQQKADFENQAFCTKQSSAFNIKQDVMQNWGFNNLSVIDI"
     gene            5244..6783
                     /locus_tag="PXE26_002083"
     rRNA            5244..6783
                     /locus_tag="PXE26_002083"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT         2026 a         1270 c         1581 g         1930 t
ORIGIN      
        1 tagaggagcc atttttatta agcgaatatg atgcctatca atttacgaat gaggtgatta
       61 aatttcattc agaagaaagc cttaaagctt ggggaggttg cttgatttgg gaacagaaca
      121 atggctcata agcgttaagc gtaatcgttt gcttgtgatc atattcacaa aataaggttt
      181 ttgtattagc taagagtgcc taataagatt aaaataggta tggttaatca tatggaggta
      241 ttttataaaa tttacattaa aaatgacggc agcgacaatg tttgcatctc ttattgcttt
      301 ttcagcacaa gcaggcggac caaaagtagc ttatacccag ccgggaattg atatgcgaac
      361 acatgaagca cagcaagcgc caattcattg ggtatctatt gagcaaatta aagaaagcat
      421 caaagattta ccccctatgg cggtaagttt tgatattgat gatactgttg ctgcaactag
      481 cggttgcttc cactacggaa agcaaaaata ttcgccagac gatttcagct acttaaaaaa
      541 tcaagatttt tgggacgaaa ttaatgctgg ctgtgataaa tattctttgc caaagcaagt
      601 tgctattaat ttaataaaaa tgcaccaaga acgtggtgat caagtttatt taattacggg
      661 gcgtaccgca ggtaaaaatg aacaagttac aacgattatg caaaagtatc ttggtattaa
      721 aaatatgcaa ccggtaaatt ttatgggggg gaaagcacat tcaacaaaat atgataaaac
      781 ccctgcgatt attgaacata aggtgcaaat tcactatggt gacagtgatg atgatatctt
      841 agctgcccgt gaagccggta ttcgaggtat tcgtatactt cgtgcagcaa attctaatta
      901 tacgccattc cctcaggccg gaggatatgg tgaagaagtt gttgtcaatt caagttatta
      961 atttcttagt ctgaaatatg gccaccattg cgtggccatc attttttatt tatataatga
     1021 cgaaaccgtt tacctttgat ctagttcaca aaatcaaact ttgcttgcaa aaaattgtcg
     1081 taaattaacc gcttgctaag atagaatggc tcatatccag ttagataaaa aggagataaa
     1141 aatgtctgaa gtatttcatt taggtttaac caaagccatg ctcaaaggtg caaaaattgc
     1201 aatcgttccg ggcgatccgg ctagaagtga acgtattgcc aaaaaaatgg acaacccaga
     1261 gtttttagcc tcaacccgtg aatttacctc ttggttaggt tatttagatg gcgaaccggt
     1321 ggtggtttgt tcaaccggta ttggcggacc gtcggtgtcg atttgtgtgg aagagttagc
     1381 acagttaggt gttcgcacat tcttacgcat tggcacaaca ggtgcaattc aagagcatat
     1441 taatgtaggc gatattttaa ttaccaccgg agcggtgcgt ttagatggtg cgagccaaca
     1501 ttttgcacca atggaatatc ctgcagtagc gaattttgaa tgtactaatg ctctttatgc
     1561 agcagcagtg gaatcaggcg ttacacctta tgtggggatt acagcttcat cagacacttt
     1621 ctacccgggg caagaacgtt acgacacttt caccggcaag atctatcgtc atttccaagg
     1681 ttcattaaaa cagtggcaag atctcaatgt tatgaatttt gaaatggaat ccgccactct
     1741 ctttacgatg tgttcggcat taggcttgcg agcaggtatg gttgctggtg taattgtaaa
     1801 ccgcactcaa caagagattc cgaatgaagc aaccattcac gacaccgaac ataaagccgt
     1861 ttcggtagta gtggaagcgg caagaaaatt aattaaaggc taatctttaa atttaaaagc
     1921 aaaaaaggta aattgtcttt gttacaattt accttttttc tttttaggga gctttctatg
     1981 aaaaaatggt tgatgttaat tacattaatt ttcggcatta ccgcttgttt ttccagttta
     2041 gaatttgatg aaagtaaaca agaaaaaatc aattcattct tgattgttgg taataaatta
     2101 tatgtggtgg gtgaactgca cgattatgaa tttgagcatc agcaagttgc ggaactgaat
     2161 aattttctca aaagcctaat tgctaataaa atcaaatctg ttgaggcaaa cttcgaggtt
     2221 aaggaatcca aaaaagtgga aggtagttat agaattattt tagatgggaa atcacttaca
     2281 gaaagtgaaa gaagtacggt gatggatacc tttcatttta attcagctca aaatccatct
     2341 attacttatc aggcggaagg gaacttggtg aaattagcca atagagaaga gcttttgcaa
     2401 aaattccgat ttaaacaagc gcttgaggcg aatgtgcgtt attacaaaat gaaaagtggt
     2461 cttcaaaata cggctgaagg agcgttaagt attgtaatgt tgcctgttgc tgtagtagct
     2521 gttttaccat tctatatgtt ttgggttggt gcttgtgcca cttacggatg ttaaataact
     2581 ttttatgtat tctctatacc tgaaaatttt atcggaatgc gattggtgtt gtgatccaaa
     2641 aacactttct acctaccagc aagaatggct tctgcacgaa gggtcactta cccaaaaatt
     2701 gtatgatgtc gcaaccaatt tcaacgtgga agtagtacaa gaaaagtgga ttgcaaaaaa
     2761 cagtgaaaaa acgaccgctt gtaatgaaga tgtttggtcg cgagaagtgt tactgaaaga
     2821 tggtgaaaaa aattggattt ttgcccaaac tcttgtgcca agatcaacaa tcgaaaatat
     2881 cgctcaaaac gtgttggaat tgggcaatca gccgattggt ttatggctat tttctcaaaa
     2941 tcctactcgc accaaattag aatggacaca aacagagaac ggtttattcg ctcggcgtgg
     3001 ggtgtatgaa attagagggt attctctgga aattcgagag ctttttttag aaacctttcc
     3061 ttatttataa aaaaatcggt tggtaatgac accaaccgat tttcatctta ttttgccaag
     3121 aactgataaa ttgcagccat atccacttcg ctcaagcctg aatcattggc ttgattgtag
     3181 gttttagtgg cttgctcaat aagcgggtaa gatttgccta atttcgcaat ttcttcgctt
     3241 gccaaattaa aatctttggt catatgtttc atcataaacg caggcggaaa ttcattagct
     3301 tggtacatcg gcacttttgc ttggaagatc gggctgttca taaacgagcc tgaaatcatt
     3361 tcgattactt tctctttcgg aatgccatat tggtcggcga agtttaacgc ctcgccatag
     3421 gcttgaatga agatgcccag tagcgagttg atcatcaatt taatcccacc ggctttaccc
     3481 acttcaccat aatagaaagt ggtggtacta aaggcagcga aaagcggttt gagcaactca
     3541 acggtttctt ctttaccggc agccagtacc aatagtttac ctgcttctgc cactttgctt
     3601 gaaccggaaa ccggagcttc aacaaattct gcaccgtgtt gggctagtag agcttctacc
     3661 gcctggtttt ggcttgggga aatggtgctc atattcacca ctactttgcc gtttaattca
     3721 gccaacactt catcgcttaa cacctgttgc acggcggcat agtctgcaat catcaagaaa
     3781 atcacatcgt aggctttcac caattccaac acagaaggat ataatgtgcc gcctgcttca
     3841 actacctttt ctgcttttgc tgggtcgcgg ttgtaaacgc ccacgttcac tccgctattt
     3901 agcaaatgtt ttgccatcgg ttcgcccatt tgccctaaac caatccaacc gactgcttgt
     3961 gtattaatgt ttttcattat ttttctcctt actgaataaa gcaaattgat tattgcgatt
     4021 ttccctcatc aagtcaaata gagagaactt gaatatagca atggaaaaga gtagcatttt
     4081 agcacttact tttttgaaca ataccaatga aaccaacaat tcttttatac gattccggaa
     4141 tgggcggatt gacgatttac gatgaaatcc gaaaagtgtt accgcacgct cactatttat
     4201 attgctttga taacgctttt ttcccatatt ccgagaagtc ggaagcagtt ttaattgagc
     4261 gagcggtcaa aattgtgcaa aaaattgcag aaaaacaacc gcttgatatg gttgttgttg
     4321 cttgtaatac ggcaagcaca gtggttctgc cggcattgcg tgagcatttt aattttccga
     4381 tagtaggaac tgtaccggca attaaaccgg cagcggcaat ttccgaaact aaagtcatcg
     4441 gcttgctcgc cactaaaggc acggttgctc gcccttatgt tgatgaattg ataagaaaat
     4501 atgctcagga ttgtacggta gaaaaaattg gcacaaccga tttggttgaa attgttgaag
     4561 aaaaacaacg aagcggtaaa gtggatatga accgactaca aaaagtggtc gaggcttggc
     4621 aaggtaagcc ggaattggat acggttatac tcggttgtac ccattttccc ttagtcaaag
     4681 ctgaattaca gcaattattg cccgatgtga aatattttgt tgatccgggt gtaggtattg
     4741 ccaaacgggt gctaagcctt ttggaagaac gcaaatttca acaaaaagcc gattttgaaa
     4801 atcaagcatt ctgcactaaa caaagttctg catttaatat caaacaagac gttatgcaga
     4861 attggggatt taataatctt tcggtgattg atatttaaac aaaacaatct gttttgatga
     4921 aaaaaggttc agttgagcaa aaactttaaa aaagggcttg cactcaattt taaaatccct
     4981 ataatacgca gcacacaacg acgcactgtt gtgaacgatt taaaattgat ttccagtgcg
     5041 tcgtttcttt ttgttcttta acaatttatc agacaatctg tgtgggcact tgttgattga
     5101 cttgattgaa aaacattttt ttaattttga agtcttaata ggtgctaact agaaattcat
     5161 tactttcttt taacttaatt ttaattaggt ttaaatttgg aagtgcgatt ttatgtcagc
     5221 agtattgagc gattaaactt tttgaattga agagtttgat catggctcag attgaacgct
     5281 ggcggcaggc ttaacacatg caagtcgaac ggtagcacat aggagtttgc tccttgggtg
     5341 acgagtggcg gacgggtgag taatgcttgg gaatctggct tatggagggg gataactact
     5401 ggaaacggta gctaataccg cgtaatgtct taggactaaa gggtgggacc atttggccac
     5461 ctgccataag atgagcccaa gtgggattag gtagttggtg aggtaaaggc tcaccaagcc
     5521 cgcgatctct agctggtctg agaggatgac cagccacact ggaactgaga cacggtccag
     5581 actcctacgg gaggcagcag tggggaatat tgcacaatgg ggggaaccct gatgcagcca
     5641 tgccgcgtga atgaagaagg ccttcgggtt gtaaagttct ttcggtgacg aggaaggcga
     5701 ttgttttaat agaacagtcg attgacgtta atcacagaag aagcaccggc taactccgtg
     5761 ccagcagccg cggtaatacg gggggtgcga gcgttaatcg gaataactgg gcgtaaaggg
     5821 cacgcaggcg gttgtttaag tgaggtgtga aagccccggg cttaacctgg gaattgcatt
     5881 tcagactgga caactagagt actttaggga ggggtagaat tccacgtgta gcggtgaaat
     5941 gcgtagagat gtggaggaat accgaaggcg aaggcagccc cttgggaatg tactgacgct
     6001 catgtgcgaa agcgtgggga gcaaacagga ttagataccc tggtagtcca cgccgtaaac
     6061 gctgtcgatt tggggattgg ggtttaactc tggtgcccgt agctaacgtg ataaatcgac
     6121 cgcctgggga gtacggccgc aaggttaaaa ctcaaatgaa ttgacggggg cccgcacaag
     6181 cggtggagca tgtggtttaa ttcgatgcaa cgcgaagaac cttacctact cttgacatcc
     6241 atggaatctt gtagagatat gagagtgcct tcgggaacca tgagacaggt gctgcatggc
     6301 tgtcgtcagc tcgtgttgtg aaatgttggg ttaagtcccg caacgagcgc aacccttatc
     6361 ctttgttgcc agcgattagg tcgggaactc aaaggagact gccggtgata aaccggagga
     6421 aggtggggat gacgtcaagt catcatggcc cttacgagta gggctacaca cgtgctacaa
     6481 tggcgtatac agagggcggc gagccagcga tggggagcga atctcagaaa gtacgtctaa
     6541 gtccggattg gagtctgcaa ctcgactcca tgaagtcgga atcgctagta atcgcaaatc
     6601 agaatgttgc ggtgaatacg ttcccgggcc ttgtacacac cgcccgtcac accatgggag
     6661 tgggttgtac cagaagtaga tagcttaacc gaaagggggg cgtttaccac ggtatgattc
     6721 atgactgggg tgaagtcgta acaaggtaac cgtaggggaa cctgcggttg gatcacctcc
     6781 ttaccaaaat cgagaacgac agcaagt
//
LOCUS       DANLZD010000131         6805 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.131, whole genome shotgun sequence.
ACCESSION   DANLZD010000131 DANLZD010000000
VERSION     DANLZD010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6805
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.131"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..569)
                     /locus_tag="PXE26_002084"
     CDS             complement(<1..569)
                     /locus_tag="PXE26_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL5594634.1"
                     /translation="METLIEFFSSYGYWAVFLVLLACGFGVPIPEDITLVSGGVISGL
                     GYTNVHWMLVVSMLGVLVGDSTMYWLGRIYGEKILKFPLIRNVATPERFATVQERFEK
                     QGWKLLFMARFLPGLRAVVYLVSGITRKVSFVKFLLVDFCAAIISVPIWVYLGDYGAS
                     NLDWLKEQVANGQHLIFAILGIVILFLGW"
     gene            complement(571..1590)
                     /gene="purR"
                     /locus_tag="PXE26_002085"
     CDS             complement(571..1590)
                     /gene="purR"
                     /locus_tag="PXE26_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor PurR"
                     /protein_id="HDL5594635.1"
                     /translation="MATIKDVAKYAGVSTTTVSHVINKTRFVAEDTTKAVWEAIKALN
                     YSPSAVARSLKINTTKSIGMIITTSESPFFAEIVLAVEEFCYSKGYSLFLCNTQNKLE
                     KIQNHLDMLIKKRVDGILVMCSEYTANSFDIFENSNIPMVIMDWGRSDERSDIILDHG
                     VEGGYIATQHLIENGHQDIAVITGNRDKEIARTRFEGFKKALSEAGLSIREEWIQEGD
                     FEPEGGYECMNNLLKSSEKLPTAVFCFNDSMALGAISAITEKGLNVPQDISVIGYDNV
                     HSSRFYAPPLTTIHQSKSRLGSAALELLLERIEDNENAKEPKVLEFFPELVKRKSVRN
                     LNIKE"
     gene            complement(1726..2454)
                     /gene="cmoA"
                     /locus_tag="PXE26_002086"
     CDS             complement(1726..2454)
                     /gene="cmoA"
                     /locus_tag="PXE26_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HDL5594636.1"
                     /translation="MQRDTLFSAPIEKLGDFTFDESVAEVFPDMIQRSVPGYSNIITA
                     IGMLAERFVTDNSNVYDLGCSRGAGILSIRRNVNAKNVQIIGVDNSQPMVERCKTHLS
                     AYHSEIPVTILLDDIRHIEIKNASMVVLNFTLQFLPREDRLALLQKIYQGLNSNGILV
                     LSEKFTFESEEMNELLIDLHHTFKRANGYSELEVSQKRNALENVMRTDSIETHKKRLQ
                     EAGFTQVELWFQCFNFGSMIAIKA"
     gene            complement(2464..3246)
                     /locus_tag="PXE26_002087"
     CDS             complement(2464..3246)
                     /locus_tag="PXE26_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDL5594637.1"
                     /translation="MTEKSQLNFNYQPSNNHANAQTMIFLHGLFGDLNNLGAIAKPFA
                     ERYSILMVDLRNHGRSFHSDEMNYALIAQDLAQLLTELNIQNAIVVGHSMGGKSAMAL
                     AAFAPELVEKLVVIDIAPVTYTQNRHQQVMAALFAVKEAKPQNRQQAKAIMAEYIRDE
                     GVQQFMLKSFDAQSEQSFRFNLQALKDNYQNVMGWQQVFVDKPTLFIKGALSDYIQAE
                     HTQTILAQFPQAKSFIVANADHWVHAEKTGTVVRAINKFLEK"
     gene            3365..3931
                     /gene="seqA"
                     /locus_tag="PXE26_002088"
     CDS             3365..3931
                     /gene="seqA"
                     /locus_tag="PXE26_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation negative regulator SeqA"
                     /protein_id="HDL5594638.1"
                     /translation="MKRIEIDDELYQYIASRTQSIGETASDILRRLLRLPQSPQPFVL
                     VQEHMINELKELVKTPSRATKKNESNAEKTVEKLENILNSEHFMNENKNVVRFTMLLA
                     ALYRANPEAFAKATEKVRGNERIYFSQSEAEILATGSGVKAKQIPDSPFWVITNNNTA
                     RKGLILKGVMESMKVPSQLIERIQALFI"
     gene            3941..5359
                     /gene="menE"
                     /locus_tag="PXE26_002089"
     CDS             3941..5359
                     /gene="menE"
                     /locus_tag="PXE26_002089"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HDL5594639.1"
                     /translation="MLINSTRFPTQFWAAHSAQNVAIIWEKGTSDYLNHLPSNITWYS
                     LNQLIAQAIFVLQQQGATPHSLIAYCGSHRLIGLLTYCASLALGAKILMLNPAQTASQ
                     RQAVLDDNGVELIINDADFAKFSAKTTACNAFPTIDFEKPATLTLTSGSSGKPKAVVH
                     SIAAHLYSAEGVCELMAFEQPNSWLLSLPLFHVSGQGIIWRWLFKGATLYVHEDKSDF
                     FLSAQKVSHLSLVPTQLQRYLNQLDSMVSQKCLLGGSMLPAELIAQAQQSGMTTFSGY
                     GMTEMASTICAVENDLNSVGFPLKHRELKLENGEIWVKGKSLGLGYWQKNGQIRPLVN
                     TQGWFATKDRGEWNHKKQLVIKGRLDNMFISGGENIQPEEIEQLIFRSQLVEQIIVLP
                     IEDKQFGHRPVAFLQFKQSDSKNELHKLKIWLSDKLERFKQPVAYYLLDIEKYQKQGL
                     IKLSRTQLQQDLKLKVLKEIYV"
     gene            5352..>6805
                     /locus_tag="PXE26_002090"
     CDS             5352..>6805
                     /locus_tag="PXE26_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel MscK"
                     /protein_id="HDL5594640.1"
                     /translation="MFRPILKTFVLSLGLMLNSYALAELPTQQVVQTQLDSAKKLDQA
                     DADNKALVQTLEDTLAFLAQIDKQKADNQALNKSIQDSQKALKTSQHNLEKLKEVTIA
                     SVDNLTQKATTDLQKELTSTQSQLETVQHDLSIINNNLVAQNTAPDKAQTALTEMVKR
                     KQEISSQLSATNIKNELQTKLEVELELIELKNTYNQILLGGSEDLSALYSAQLDEKKQ
                     EQQNLQAEIANLQTAINNKIVEESQNKLDQAQAVQNQQNNATTNPVILRELDINTKVT
                     QELLKQTKDMTQLSQDNLRIKSVLDNLQQTQRNIEEQISSLQGTLVLSRIINKQKQSL
                     PQDEMISGLSKQIADLRVRVFDITEFKDSFADINAYISRIEQDEKTTFTSKEKEQLSK
                     ILQERSDTLTEMIKSLNNQLNLLINIELNQQQVQTISDALQQKLQQQSFWVKSNNPID
                     LEWFSKFVDITHYQFIDIGKKLNFSNWRDNLLPA"
BASE COUNT         2275 a         1385 c         1177 g         1968 t
ORIGIN      
        1 ttccagccta aaaatagaat aacaatgcct aaaatggcaa aaatgaggtg ctgcccatta
       61 gctacttgtt cttttagcca atccaaatta gatgccccat agtcgcctaa ataaacccaa
      121 attggcacag agataatagc ggcacagaaa tcaactaata aaaattttac gaagctgact
      181 tttctggtaa tacctgaaac taagtaaacc accgcgcgca agccaggtaa aaaacgagcc
      241 ataaaaagta gtttccatcc ttgtttttca aaacgttctt gcacggttgc aaaacgttca
      301 ggtgtcgcaa cattcctgat taatggaaat ttgagaattt tttcgccata gattctacct
      361 agccagtaca ttgtgctatc gccaactaat actcctaaca tactaacaac cagcatccaa
      421 tgcacattgg tgtagcctaa tcctgaaata acaccaccgg atactaacgt aatatcttca
      481 ggaatcggca caccgaaacc acaggcaagt agcacaagaa aaacagccca ataaccatag
      541 ctactaaaaa attcaatcaa tgtttccata ttactcctta atgtttaaat tccgaaccga
      601 tttacgtttg accaattcag gaaagaactc taatacttta ggctcttttg cgttttcgtt
      661 atcttcaata cgttctaata ataattctaa tgctgccgag cctaagcgag attttgactg
      721 atggattgtc gtaagaggcg gtgcataaaa gcgtgagcta tgcacgttat catacccgat
      781 cactgaaata tcttgcggca cattcagccc tttttcggta atagctgaaa ttgcccctag
      841 tgccattgag tcattaaaac aaaaaaccgc ggttggtaat ttttcactgc tcttaagcaa
      901 attattcata cactcatacc ccccctcagg ttcaaaatcg ccttcttgaa tccattcttc
      961 acgaatagac aaacccgcct cagatagcgc ttttttaaaa ccttcaaaac gggttcttgc
     1021 aatttcttta tctctattgc cggtaattac agcaatatct tgatgcccgt tttcaattaa
     1081 atgctgagtc gcaatatagc caccttcaac accgtgatct aaaataatat cactgcgttc
     1141 atcacttcgt ccccaatcca taatcaccat tgggatattg ctgttttcaa agatatcaaa
     1201 tgaattagct gtatattcgg agcacatcac caaaatgcca tcaacccgtt ttttgatgag
     1261 catatctaaa tgattttgaa ttttctcaag tttgttttga gtattgcaca aaaatagtga
     1321 ataccctttg ctatagcaaa attcctctac cgctaacaca atttcagcga aaaacggtga
     1381 ttcgctggtt gtaatgatca taccgataga tttagtcgta ttaattttca aactccgcgc
     1441 tacagcacta ggagaatagt tcagcgcttt aatagcctcc caaactgctt ttgtagtgtc
     1501 ctctgctaca aagcgggttt tgtttataac gtgagaaacc gttgtagtcg atacaccagc
     1561 atattttgcg acatctttta tcgttgccat acctttttcc tcctaaataa gtagtggtgc
     1621 attataactg attctaactg acttttatta taaagaaata gatagaatgc aagcggttgc
     1681 tttttatcaa gaatttgcaa aaaattttac aaatatcacc gcttgttagg ctttaattgc
     1741 aatcattgag ccaaaattaa agcattgaaa ccaaagttca acttgtgtaa aaccagcttc
     1801 ttgcagacgt tttttatggg tttcaatact atctgttcgc atcacatttt ccaaagcatt
     1861 acgcttttgg ctgacttcca attcactgta gccatttgct cgtttgaatg tgtgatgaag
     1921 gtcgatcaat agctcgttca tttcctcact ctcaaaggta aatttttccg ataacactaa
     1981 aatgccattg gaatttaatc cttgataaat cttctgtaat aatgctaggc gatcttctct
     2041 tggtaaaaat tgcaaggtga aattaagtac caccattgaa gcatttttaa tttcaatgtg
     2101 gcgaatatca tcaagtaaaa tcgtcaccgg gatctcagag tgataagcac ttaaatgggt
     2161 tttacaacgc tcaaccatcg gctgagaatt atctaccccg ataatctgca cattcttcgc
     2221 attcacatta cggcgaatag ataaaatccc tgcgcctcgt gaacaaccta aatcataaac
     2281 atttgaatta tctgtgacaa aacgctccgc caacattcca atagcagtaa taatattgga
     2341 atagcccggc acggagcgtt ggatcatatc cggaaacact tcagcaaccg attcatcaaa
     2401 agtaaaatcg cccaatttct caatcggagc ggaaaataat gtatctcttt gcatttttct
     2461 cccttatttt tctaaaaatt tattgattgc tctcacaaca gttcctgttt tttctgcgtg
     2521 aacccaatga tcagcgtttg ccacaatgaa agatttggcc tgcggaaatt gtgccaaaat
     2581 cgtttgtgta tgctctgctt gaatataatc cgataatgca cctttaataa acaaggtcgg
     2641 tttatccaca aatacctgct gccaccccat cacattctga taattatctt ttagcgcctg
     2701 taaattaaaa cggaaagatt gctcgctttg ggcatcaaaa gatttcaaca taaactgttg
     2761 cacgccttca tctcgaatat attcagccat tatcgcttta gcttgctgac gattctgggg
     2821 tttagcttct ttcaccgcaa ataaggctgc cataacctgc tgatgccgat tttgggtata
     2881 agtgaccggg gcaatatcaa tcactaccaa tttctccacc agttcaggag caaatgcagc
     2941 caatgccatc gcactttttc cgcccattga atgcccaacc acaatagcat tttggatatt
     3001 taattctgtg agtaattgtg ctaaatcttg tgcaatcaaa gcataattca tttcgtctga
     3061 atgaaaagat cgcccgtgat ttctgagatc aaccattaaa atggagtaac gttctgcgaa
     3121 tggttttgct attgcgccta ggttatttaa atctccaaac aatccatgta agaagatcat
     3181 cgtctgagca ttagcatgat tattcgaagg ttggtaatta aagtttaact gcgatttttc
     3241 tgtcatataa atgtcattgt tcatataaat tttcagcgat gttcctctat aaaaaacaat
     3301 agaaatgcgt ataatagcaa gcactattaa cgcatttaat acccgcagat atttgaggat
     3361 cccgatgaaa cgaatcgaaa ttgatgatga attatatcag tatattgcaa gccgtacaca
     3421 atctattggt gaaactgcgt cagatatatt acgccgtcta ttacgcctgc cacaatcgcc
     3481 tcagcctttt gttttagtac aagaacacat gatcaacgag cttaaagagc ttgtcaaaac
     3541 gccttctcgt gctacgaaaa aaaatgaatc caatgcagaa aaaaccgttg aaaaattgga
     3601 aaacatttta aattccgagc attttatgaa cgaaaataaa aatgtagtgc gttttactat
     3661 gctattagcc gcattatatc gagcaaatcc ggaggctttt gctaaagcaa ccgaaaaagt
     3721 gcgtggtaat gaacgtatct acttttcgca aagtgaagcc gaaattttag ctactgggag
     3781 tggagtaaaa gccaagcaga tcccagattc accgttttgg gtaattacca ataataatac
     3841 cgcacgcaag ggacttattc tcaaaggcgt aatggaatcc atgaaagtac caagccagtt
     3901 aatcgaacgc attcaagcgc tttttatcta attaattgaa atgctcatca attctactcg
     3961 ctttcctacc caattttggg ctgctcattc agcccaaaat gtggcgatta tttgggaaaa
     4021 aggaacatca gactatctta accaccttcc atcaaacatc acttggtata gtttgaatca
     4081 gttgattgcg caagctattt tcgtgttgca acaacaaggt gctactccgc acagtttgat
     4141 tgcctattgt ggttctcatc ggctcattgg cttgctcact tattgtgcta gccttgcttt
     4201 gggggctaag attctaatgc ttaaccctgc tcaaacagca agtcaacgac aagcagtctt
     4261 agatgacaat ggtgttgagc tcattattaa tgatgccgac tttgcaaaat tttcagcaaa
     4321 aacgaccgct tgtaatgcct tccctacgat tgattttgaa aaaccagcta ccctaaccct
     4381 aacctcaggc tcaagcggta aacctaaagc agtggtgcat tctatagcgg cccatctcta
     4441 tagtgccgaa ggagtatgtg aattaatggc atttgagcag ccaaactctt ggctactgag
     4501 cttgcctctg tttcacgttt ccggacaagg cattatttgg cgttggttat ttaaaggtgc
     4561 aacactgtat gttcacgaag acaaaagtga tttttttctt tcagcacaaa aagtgagcca
     4621 tctctcttta gtccccaccc aattacaacg ctatttaaac caattagatt ctatggtcag
     4681 ccaaaaatgt ttactgggtg gatctatgct tccagccgaa ttgattgctc aagcacaaca
     4741 atctgggatg actacctttt caggctacgg aatgactgag atggcatcaa ccatttgtgc
     4801 agtagaaaat gatttaaaca gtgttggttt tccgttaaaa catcgggaac taaaattaga
     4861 aaatggtgaa atttgggtaa aaggcaaatc actcggctta ggctattggc aaaaaaatgg
     4921 gcaaattcga ccgcttgtaa acacacaagg ctggtttgcc actaaagatc gtggcgaatg
     4981 gaatcacaaa aaacagcttg taataaaagg acgattggat aatatgttta tttcaggagg
     5041 ggaaaatatc caacctgagg aaattgaaca actgattttt cgttctcagc ttgtcgaaca
     5101 gattatcgtg ttgccgattg aagataagca atttggacat cgaccagtgg cgttcttaca
     5161 attcaagcaa tctgattcaa aaaatgaact ccataaatta aaaatttggc tgtctgataa
     5221 attagaaaga ttcaaacagc ctgttgccta ttatttactg gatatagaaa aataccaaaa
     5281 acaaggctta attaaactat caagaacaca attacaacaa gatttaaaac tcaaagtatt
     5341 aaaggaaatc tatgtttaga ccgattttaa aaacatttgt gcttagttta ggcttaatgc
     5401 taaatagtta tgcattagct gaattgccaa cccaacaggt agtgcaaacg cagttagata
     5461 gcgccaaaaa attagatcaa gccgatgcgg ataataaggc attggttcaa acacttgaag
     5521 atacgcttgc tttcttagcc caaattgata aacaaaaagc agataatcag gcattgaata
     5581 aatctattca agattcccaa aaagcattaa aaacaagcca acataatctt gaaaaattaa
     5641 aagaggtgac tattgcaagt gtcgataatt taacacaaaa agcgacaaca gatttacaaa
     5701 aagagttaac ctctacacaa tctcagctgg aaacagtaca acacgattta agtattatta
     5761 ataataattt agttgcacaa aataccgcac cggataaggc tcaaacggcc ttaaccgaga
     5821 tggttaaacg taaacaggaa attagtagcc aactttcagc gactaacatt aaaaatgaac
     5881 tacagacaaa gttagaagta gaattagaat taatagaatt aaaaaacact tacaatcaaa
     5941 tattacttgg tggcagcgag gatttatctg cgctttactc tgctcaatta gatgaaaaaa
     6001 agcaagagca gcaaaatcta caagcagaaa ttgcaaacct gcagactgct atcaacaata
     6061 aaattgtaga agagtctcag aacaagctag atcaagcaca agcggttcaa aatcagcaaa
     6121 ataatgcaac gacgaaccca gttatcttgc gtgaattgga tataaatacc aaagtcacac
     6181 aagagttgct aaaacagacc aaagatatga cgcagttatc acaagataat ttgcgaatca
     6241 aaagtgtgct agataactta cagcaaaccc aacgtaatat tgaagaacaa atcagttctc
     6301 tgcaaggtac gttggtgctt tctcgtatta ttaataagca aaaacaatca ttaccacaag
     6361 atgaaatgat ttccggacta tcaaaacaaa ttgcagattt acgtgtacgt gtttttgata
     6421 tcactgaatt taaagactct tttgcggaca taaatgctta tatcagccgc atagagcaag
     6481 atgaaaaaac aacctttacg agtaaagaga aagaacaact gagtaaaatt ttacaggaac
     6541 gttctgacac tttaactgag atgattaaat cattaaataa tcagctcaat ttattaatca
     6601 atattgaact aaaccagcaa caagtgcaga ccattagtga tgcgttacag caaaaactgc
     6661 aacagcaaag cttctgggtt aaaagtaaca accccattga tcttgaatgg tttagtaaat
     6721 ttgtcgatat tacccactat caatttattg atattggaaa aaaactcaat ttttcaaatt
     6781 ggcgggataa tttattacct gcaag
//
LOCUS       DANLZD010000132         6656 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.132, whole genome shotgun sequence.
ACCESSION   DANLZD010000132 DANLZD010000000
VERSION     DANLZD010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6656)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6656)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6656
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.132"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            84..1511
                     /gene="aspA"
                     /locus_tag="PXE26_002091"
     CDS             84..1511
                     /gene="aspA"
                     /locus_tag="PXE26_002091"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HDL5594641.1"
                     /translation="MSDVRIEHDLLGEREVPNSAYWGIHTLRAIENFNISNVTISDVP
                     EFVRGMVMVKKATALANGELGAIPKKIAKAIVAACDEVLVKGRCLDQFPSDVYQGGAG
                     TSVNMNTNEVIANLALEILGEAKGKYDIVNPMDHVNASQSTNDAYPTGFRIAVYNSIT
                     KLINKITYLQTAFENKATEFSDVLKMGRTQLQDAVPMTLGQEFKAFAVLLDEEVRNLK
                     RTAELLLEVNLGATAIGTGLNTPEGYSTLAVKYLAEVTQLPCSLSENLIEATSDCGAY
                     VMVHGALKRTAVKLSKVCNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEV
                     VNQVCFKVIGNDTTVTFAAEAGQLQLNVMEPVIGQAMFESIELLSNACINLRDKCIDG
                     ITANRDICQNYVFSSIGIVTYLNPFIGHHNGDIVGKICATTGKSVREVVLERGLLTEE
                     QLDDILSIENLMNPTYKAKRFTEEE"
     gene            complement(1586..3604)
                     /gene="rep"
                     /locus_tag="PXE26_002092"
     CDS             complement(1586..3604)
                     /gene="rep"
                     /locus_tag="PXE26_002092"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HDL5594642.1"
                     /translation="MKLNSQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCG
                     YSPKQIAAVTFTNKAAREMRERVDHSIGKENSKGLTISTFHTLGFEILKREYKLLGFK
                     SGMTLFDEQDQIALLKHLLPENVTEDKDLLKALIATISNWKNDLLSPERVLTRVRDER
                     ERVFSHFYQLYQNQLKAYNALDFDDLIMLPVLLFRQFPEAKSRWQQKIRYLLVDEYQD
                     TNTSQYELIKLIVGNEPNFTVVGDDDQSIYSWRGAKPENMQRLREDFDLQVIKLEQNY
                     RSSQRILHCANILIDNNDHLFSKRLFSELGQGEKLQVIEAKNEEHEAERIVGELIAHR
                     FSKKTKYKDYAILYRGNHQSRLLEKLLMQNRIPYKISGGTSFFARAEIKDMMAYLRLV
                     VNQDDDAAFLRIVNTPKREIGAATLEKLGILANEKQVSLFEAIFDFELIQRLTPKPYQ
                     ALQDFARWIVEIADQADRSDPIEAVKDLLAKIQYEAYLYEMAANPKVAEMQSRNVQTL
                     FEWVQAMLEGDEIEPPMNLVQVVNRLTLRDMLERGEEDDEADQVQLMTLHASKGLEFP
                     HVFLIGMEEGILPHQTSLDEDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEIIKP
                     EPSRFLLELPQDDLEWESEKPRMTEQEKEAKSSANIANLMAMLKANKK"
     gene            3852..4967
                     /gene="potA"
                     /locus_tag="PXE26_002093"
     CDS             3852..4967
                     /gene="potA"
                     /locus_tag="PXE26_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     ATP-binding protein PotA"
                     /protein_id="HDL5594643.1"
                     /translation="MEKVEQKAIIELKNVTKSYGSKTILKNLNLTINDGEFLTILGPS
                     GCGKTTALRLIAGFEDLTEGSIILDGQDVSNVPAEQRPVNTVFQSYALFPHMTIFENV
                     AFGLRMQKVPNAEIEPRVMEALRMVRLEDRAQQKPAQLSGGQQQRIAIARAVVNKPKV
                     LLLDESLSALDYKLRKEMQNELKALQRQLGITFIFVTHDQEEALTMSDRIIVMNAGKI
                     AQDGTPREIYEEPSNLFVARFIGEINVFDATVIERVDATNVKANVEGRICNIKVEDLE
                     VQPNQKLKVLLRPEDIVIEELDENESSKAIIGHIIDRNYKGMTLESSVRLDHNGMNVL
                     VSEFFNEDDPNIDHEVGQKVALTWYEGWEVVLNDEGE"
     gene            4954..5817
                     /gene="potB"
                     /locus_tag="PXE26_002094"
     CDS             4954..5817
                     /gene="potB"
                     /locus_tag="PXE26_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005698572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotB"
                     /protein_id="HDL5594644.1"
                     /translation="MKANNKFQNGAVATIFGWLLLFVLVPNVLVLIISFLTENRQSQY
                     FVDFAFSFDAYKSLFNDTYAAVLWNSLYMAGIATFFCLIIGYPFAFFIAKMPERIRPF
                     LLFLVVLPFWTNSLIRIYGIKIFLGVKGFLNESLMALGIISEPMRLLNSEIAIIIGLV
                     YILLPFMILPLYSSIEKIDNRLLEAAKDLGANAFQRFIKVTIPLTMPGIVAGCLLVLL
                     PAMGMFYVADLLGGGKTPLVGNIIKSLFLNTNQFALGSAVSIALTILMALMLYVYYRA
                     NKLLNKKVELE"
     gene            5817..6584
                     /gene="potC"
                     /locus_tag="PXE26_002095"
     CDS             5817..6584
                     /gene="potC"
                     /locus_tag="PXE26_002095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HDL5594645.1"
                     /translation="MKKMFRNLFMLVVFAYLYIPIIILVINSFNEDRFGLNWKGFTWN
                     WYERLFSNDTLVQATLNSLTIAFFAATFSTILGALTSIALYRYRFRGKKLVGGMLFVV
                     MMSPDIVMAVSMLVLFMILGIKLGFISLLIAHITFCLPYVVIAISSRLSDFDGKMLEA
                     AKDLGASEVTILRKIILPLALPSIISGWLLSFTISLDDVIVSSFVTSPSYEVLPLKIF
                     SLVKTGVTPEVNALATIMIIFSLTLVVLSQLVVKKKV"
BASE COUNT         1947 a         1323 c         1316 g         2070 t
ORIGIN      
        1 atttgattta gatcgcatta tttgtctatt aaaatcgtta ttatctacca aaatcgattg
       61 tcatttattt taaggagatg aatatgtcag atgtgcgtat tgaacacgat ttacttggtg
      121 aaagagaagt acctaatagt gcttattggg gcattcatac attaagagcg attgagaatt
      181 ttaatatctc aaatgtcacc atttctgatg tacctgaatt tgtgcgtggc atggtaatgg
      241 taaaaaaagc tactgcgttg gcaaatggtg aattgggtgc aatcccgaaa aaaattgcca
      301 aagctattgt ggcagcctgt gatgaagtat tagtgaaagg acgctgtctc gatcaattcc
      361 cttcagatgt ttatcaaggt ggagccggca catcggtgaa tatgaatacc aatgaagtga
      421 ttgccaacct tgcattagaa attttgggcg aggcaaaagg taaatatgat attgtcaatc
      481 caatggatca cgttaatgca agccaatcca ccaatgatgc ctatccaacc ggtttccgca
      541 tcgcggttta taacagtatc actaaattaa tcaataaaat cacttaccta caaactgcat
      601 ttgaaaataa agccactgag ttttccgatg tactaaaaat gggaagaacg cagttacaag
      661 atgccgtgcc aatgacgctc ggtcaggaat ttaaagcttt tgccgtatta ttagatgaag
      721 aggttcgtaa ccttaaacgg acggcagaat tgcttcttga agtgaattta ggcgcaaccg
      781 ctatcggtac tggtctgaat acgccagagg gttactctac tcttgcagtt aaatatttag
      841 ccgaagtcac gcaactgcct tgctcactgt ctgaaaatct cattgaggca acatctgact
      901 gtggtgctta tgtaatggtt cacggtgcat taaaacgcac cgccgtcaaa ctttctaaag
      961 tgtgtaatga cttacgatta ctttcatcag gcccacgtgc cggcttaaat gaaattaatc
     1021 ttccggaatt acaagccggc tcatctatta tgccggcaaa agtaaaccct gttgtacctg
     1081 aagtcgtaaa ccaagtgtgc tttaaagtga ttggtaacga caccaccgtt acttttgcag
     1141 cagaggccgg tcaattacag cttaacgtaa tggagccggt tatcgggcaa gcaatgtttg
     1201 aatctatcga gctgctttcc aatgcatgta ttaatctacg tgataaatgt attgacggta
     1261 ttaccgctaa ccgtgacatc tgccaaaact atgtgttcag ctctattggt attgtgacct
     1321 acctcaatcc atttatcggc caccataatg gtgatattgt cggcaaaatt tgtgcaacca
     1381 ccggcaaaag tgtacgagaa gttgtgcttg agcgaggctt actcaccgaa gaacaactcg
     1441 atgatattct ctcgattgag aacttaatga atccgactta taaagccaaa cgctttaccg
     1501 aagaggaata atcattgttt acaagcggtc tgattctggc aaaaaattgc aaatttttac
     1561 caaaatcaga ccgcttgtta tcccattatt tcttatttgc tttcagcatc gccattaaat
     1621 ttgcaatatt tgcagaagat tttgcctctt tttcctgttc ggtcattctt ggcttttcac
     1681 tttcccactc caaatcatct tgtggcaatt ccagtaaaaa ccggctcggc tcaggtttga
     1741 tgatttcgcc atattggcga cgttctttac acagtgaaaa cgtgagcgtt tgttgggctc
     1801 gggtaatgcc gacataagcc aaacgccgct cttcttctac attgtcctca tcaaggctgg
     1861 tttggtgtgg cagaatcccc tcttccatac cgattaagaa aacgtgcgga aattccaacc
     1921 ctttcgaggc gtgaagagtc attagttgaa cttgatcggc ttcatcgtcc tcttcgccac
     1981 gttcgagcat atctcgcaag gttaaacggt ttaccacttg caccaaattc atcggaggct
     2041 ctatttcatc gccctctaac atcgcttgca cccattcaaa caaggtctgc acattacggc
     2101 tttgcatttc cgctactttt gggttcgccg ccatttcata caaataggct tcatactgaa
     2161 ttttcgccaa cagatctttt actgcttcaa tcggatcgga tctatcggct tgatcggcaa
     2221 tttccacaat ccagcgggca aaatcctgta aggcttggta aggctttggc gtgaggcgtt
     2281 gtatgagttc aaaatcaaaa atcgcctcaa acaaactgac ctgcttttca ttagcaagta
     2341 tgcctaattt ttctagcgtt gccgccccaa tttcccgttt cggcgtattc acaatacgca
     2401 agaaagctgc atcatcgtct tgattcacta ccaaccgcag atacgccatc atatctttga
     2461 tttccgctcg agcaaaaaat gacgtaccac ccgaaatttt atacggaatg cggttttgca
     2521 ttagcaattt ttccaacaag cgggattgat ggttgcctcg atacaaaatt gcataatctt
     2581 tgtatttggt ctttttcgag aaacgatggg caatcagctc gcccacaatg cgttccgctt
     2641 cgtgttcctc attttttgcc tcaatgacct gtaatttttc cccttgcccc agttctgaaa
     2701 acagccgctt gctaaacaag tgatcgttat tatcaatcag aatattggca caatgcagaa
     2761 tccgctggct ggaacggtaa ttttgctcaa gtttaatcac ttgcaaatca aaatcttccc
     2821 gtaaccgttg catattttca ggcttcgccc cacgccaaga gtaaattgat tggtcatcat
     2881 cgcccacgac cgtaaagttt ggctcgttgc cgacaatcag cttaattaac tcatattggc
     2941 tggtgttggt gtcttgatat tcatcaacta acaaatagcg aattttctgt tgccaacgag
     3001 attttgcttc gggaaattgg cggaacagca acaccggcaa cataatcaaa tcatcaaaat
     3061 ccaacgcatt ataagcctta agttgattct ggtagagctg ataaaaatgt gaaaacactc
     3121 gctcacgttc atcacgcaca cgagtaagta ccctttcagg cgaaagcaaa tcgtttttcc
     3181 agttagaaat agtggcaatt aaggctttca gcagatcctt atcttccgtc acattttcag
     3241 gcaataaatg tttcagcaaa gcaatttgat cctgctcatc aaacaaggtc atacccgatt
     3301 taaaaccgag caatttatat tcgcgtttta aaatttcaaa cccaagtgtg tgaaaagtcg
     3361 aaatggttaa acctttgctg ttttctttgc cgatagaatg atccacccgt tcacgcattt
     3421 cccgagcagc tttgttggta aaggttactg ctgcaatctg cttaggcgaa tagccacaat
     3481 gtgcaattaa atgtgcgatt ttattaataa tcacccgagt cttacccgag ccggcaccag
     3541 ccagcacaag gcaagcccct ttggtatatt ctactgcttg ttgttgttga gaattgagtt
     3601 tcattgaatc tattcaaaag taattttgac aactatttta acggaaagaa aacaagcggt
     3661 cgaattttca ggaaaatttg caaaaaactt tgaaaatccg accgcttgtt catcagagaa
     3721 aaatccccaa aacgcaaatt tttcctttca atcttgcccc tttagctata tcattataag
     3781 ttgatttttt aggggcaaat gcctgatttt ataactcctt ttctttttaa tttaagggaa
     3841 aaaaacagta gatggaaaaa gtagaacaga aagctatcat tgagcttaaa aatgtaacaa
     3901 aaagctacgg tagtaaaacg attcttaaaa atttaaattt aaccattaac gatggtgaat
     3961 ttttaacaat tttaggccct tccggttgtg gtaaaacaac tgcgttacgt ttaattgccg
     4021 gttttgaaga tttaactgaa ggttcaatta ttcttgatgg gcaagatgtt tctaacgttc
     4081 cggcggagca acgcccggta aacaccgtat tccaaagcta tgcccttttc ccacatatga
     4141 cgatttttga aaacgtggct ttcgggctgc gtatgcaaaa agtgccaaat gctgaaattg
     4201 agccacgtgt gatggaagca ttacgaatgg tgcgtttaga agaccgcgct caacaaaaac
     4261 cggctcagct ttccggtggt cagcaacaac gtattgcaat tgcccgtgcg gtggtaaata
     4321 aaccgaaagt attgttgtta gacgaatcgc tttctgcgtt agattataaa ttgcgtaaag
     4381 agatgcaaaa tgaattaaaa gcattgcaac gtcaattagg cattaccttt atttttgtga
     4441 cccacgatca ggaagaagcc ttaaccatgt ctgatcgtat tatcgtaatg aacgctggta
     4501 aaatcgctca agacggtaca ccacgtgaga tttacgaaga gccaagtaac ttatttgtag
     4561 ctcgtttcat cggcgaaatt aacgtttttg atgcaactgt aattgagcgt gttgatgcaa
     4621 ctaatgtaaa agcaaacgta gaaggtcgca tttgcaatat caaagtggaa gatttagagg
     4681 ttcagccgaa ccaaaaatta aaagtattgt tacgccctga agatattgtg attgaggagt
     4741 tagacgaaaa cgaaagctcg aaagcaatta tcggtcatat tatcgaccgt aactacaaag
     4801 gtatgacatt agagtctagc gtgagattag atcataacgg tatgaatgta ttggttagcg
     4861 agttcttcaa tgaagacgat ccgaacattg accacgaagt gggacaaaaa gttgctctta
     4921 cttggtatga aggctgggag gttgtgttaa acgatgaagg cgaataacaa attccaaaat
     4981 ggtgcggtcg caactatttt cggttggtta ttacttttcg tattagtgcc gaacgtactc
     5041 gttttaatca tcagcttctt aacagaaaac cgtcaaagtc agtattttgt ggactttgca
     5101 tttagttttg atgcttataa atcactgttt aatgacacct atgcagcagt attgtggaac
     5161 tcgctatata tggcgggcat tgccaccttt ttctgtttga tcatcggcta tccctttgca
     5221 ttttttattg ccaaaatgcc ggaaagaatt cgtccgtttt tactgttttt agtagttcta
     5281 ccgttttgga ctaactcact gattcgtatt tatggcatta agattttctt aggcgtaaaa
     5341 ggctttttaa atgaaagctt gatggcttta ggtataatca gcgagccaat gcgtttatta
     5401 aactcagaaa ttgcgattat tattggttta gtttacattc tattaccttt tatgattcta
     5461 ccgctttatt catcaatcga gaaaattgat aaccgcttac tagaagctgc aaaagactta
     5521 ggtgcaaacg ccttccagcg ttttattaaa gtgactattc cattaacaat gccgggcatt
     5581 gtcgcaggtt gtttattagt attacttccg gcaatgggta tgttctatgt ggcagattta
     5641 ttaggcggcg gtaaaacacc gttagtaggt aacattatta agagcttgtt cttaaatacc
     5701 aaccaatttg cattaggttc agcagtaagt attgcattaa ctatcttaat ggcattaatg
     5761 ctttatgttt actatcgtgc aaacaaatta ttaaataaaa aggtggagct tgaataatga
     5821 aaaagatgtt tagaaacctt tttatgttgg ttgtttttgc atatctctat attccaatta
     5881 tcattttagt gatcaactcc tttaatgaag accgctttgg attaaattgg aaaggcttta
     5941 cttggaattg gtatgagcgt ttattcagta atgatacgct tgtacaagca acattgaact
     6001 cattaactat tgcgttcttt gcggcaacat tctcaaccat tttaggggca ttaacctcta
     6061 ttgcgcttta ccgttaccgt ttccgtggta aaaagctagt gggcggaatg ttattcgtgg
     6121 taatgatgtc gcctgatatc gtaatggcgg tatctatgct cgtattattt atgatcttag
     6181 gtatcaagct aggctttatt tcgctattaa ttgcacacat tactttctgt ttgccttatg
     6241 tggtaattgc aatttcctca cgcctcagcg attttgacgg caaaatgcta gaagctgcaa
     6301 aagacctagg tgcaagtgaa gtgactattt tgcgtaaaat tattttacca ctggcattac
     6361 cttcgattat ttcaggctgg ttgttaagct ttacgatttc gttagatgac gttattgttt
     6421 catctttcgt gacaagccca agctacgaag ttttaccact gaaaattttc tcattggtta
     6481 aaacaggtgt aacacctgaa gtgaatgcac tagcaactat tatgattatt ttctcattaa
     6541 cattagtggt attaagccag ttagtagtga agaaaaaagt ctaaaaatca ctaaaaatcg
     6601 tatacataaa tcagcacttt aaagagtatt aaagtgccga tttttttaca aaaata
//
LOCUS       DANLZD010000133         6487 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.133, whole genome shotgun sequence.
ACCESSION   DANLZD010000133 DANLZD010000000
VERSION     DANLZD010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6487)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6487)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6487
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.133"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            292..2823
                     /locus_tag="PXE26_002096"
     CDS             292..2823
                     /locus_tag="PXE26_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5594646.1"
                     /translation="MQREYEKLGASISSVSRKRTEENRALKDSRHQQAKQLLYFRSLR
                     RELRASGINIKAFAQSETNLTDKIAKANQLIDQQKAKLEKLNAVKARNEKYWATVEKV
                     KNTSERLHNLGQRSMISGAAISAPVVGLGKGVVGMAQTAGKFEQFNAILEVTEGSAEK
                     AKQSFDWVKQFAVDTPSNLDEAMEAFVKLRAYGLDPTNGLLQTLGDTGAAMGKPVMQA
                     VEAIADALTGENERLKEFGIKGSVVKGTNIIEYAYTDKLGKQQVAKVNKNNRKEIEQT
                     LTRIFNEKYAGAMEKQAKTLVGIWAKIEDYWTNFQMQVMESGAFDWIKNKLQWVLDSL
                     DKMAENGELQKWAEDVGAVIQETVQGLWAFGEKIIEVVKWLASLARENKGLIATFVKW
                     SAILGSSLTVLGAFAVVASFALYPVARLALGIGKFTGASTLLNKALFDSNDKFRLFNK
                     SLYSSGTTAAFVKSKFNQLATLPNVLGSSFNKLGGGIKMLIPQLKTKVFWLNMLKGIL
                     GKLWSAIRFIFSPLKLLLGIFSPIGLAITAISVAGVALYRNWEKVRAFFGGFLQGLSK
                     GLAPVLERFKPLGKLFETISNWVKSTFKWLSDLLTPADKTSESLDKASSAGEKFGLAL
                     AGAIDLVTSPVQWLVDQFKWISENMPSWDTIGEGVKKAATAIVPTEHAKQITKTAEMS
                     NNMYDPNYTPPQLEQKWIGGLVGNGKGRGFATGGYTGNGGKYEPAGIVHKGEYVMTKE
                     ATARLGVANLNRLNYGKVAGLTALASSVAFAQPMPAVKIDSRPPLTASQPSPTVAPVS
                     QNIHITINATGGQDPQAIARLVAMELEKQQRQAQARARSSLRDRG"
     gene            2888..3064
                     /locus_tag="PXE26_002097"
     CDS             2888..3064
                     /locus_tag="PXE26_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594647.1"
                     /translation="MFKEKGYDEFVNECVRKGREEHKAGLGFTLEQSRLHIKKTIEQK
                     SQELNEFQREVVYG"
     gene            3057..3344
                     /locus_tag="PXE26_002098"
     CDS             3057..3344
                     /locus_tag="PXE26_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5594648.1"
                     /translation="MAKITIKPQALSQFDEIVKSVIEFTGFETSGIRLQSDIFDKIEQ
                     IAFMPLSGRAREDGTRETFVRRYRIVYDYDRQADEVIILAIIHSSRLYPRP"
     gene            3473..4078
                     /locus_tag="PXE26_002099"
     CDS             3473..4078
                     /locus_tag="PXE26_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL5594649.1"
                     /translation="MSEPNHAEQIRRLDNIIRLGTIAEVDLTTATARVNSGGITTDFL
                     PWLTFRAGTSQTWSAPTVGEQCVVLSVSGEFTTGVILFGIYTQNAPSQSADEHLFRFS
                     DGAEISYNTASGQLTVKNCKVVIVQATESITLDTPTVKATKNVVIGGNLSVKGTTSSQ
                     GAISTQGAVTAKGDVSGAGISLGSHHHIEQGDGRPTSGAKP"
     gene            4078..4413
                     /locus_tag="PXE26_002100"
     CDS             4078..4413
                     /locus_tag="PXE26_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HDL5594650.1"
                     /translation="MNRETGEQLEDEVEHIKQSIKDILLTAKGSRVMRRTYGSNLYKL
                     TDKPIAASLIMQLSAACVMALQQWEPRIAITRFKVEFAEDNYNKLICTLDFTLKHRKI
                     SIKGMRFTL"
     gene            4410..5327
                     /locus_tag="PXE26_002101"
     CDS             4410..5327
                     /locus_tag="PXE26_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate assembly protein"
                     /protein_id="HDL5594651.1"
                     /translation="MSEIVDLSKLPAPKVLEELDYETLLAERKAKFLSLYPESERAVM
                     AARLALESEPITKLLQENCYLQLLERQRINSAAQATMLAYATGTDLDVIAANFNVERL
                     VVQAEDLTASPPIVEELEPDDDFRQRVQLKIESVSVAGPRKAYTFHALSANGKIADVS
                     VISPQPAYVTVTLLSRDGNGAVASEIINAAKIALNDEEVRPIADRVTVQGASIVEYEI
                     NAVLHLYRGPEKEPILKAAKANLEAYINQTKRIGRDVTHSGIHAALHVAGVQNVEILQ
                     PRTDLVLTPYQAGYCVNYTLNVEVSDEYS"
     gene            5314..5946
                     /locus_tag="PXE26_002102"
     CDS             5314..5946
                     /locus_tag="PXE26_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HDL5594652.1"
                     /translation="MNTVKALLPPGSSLLEKRAAECLQQAVQNPIKFANLINPHKCPV
                     KFLPYLAWALSVDYWEEHWSEELKRETIIRSFEEHRKKGTASAVRRIVESLGYAFEIR
                     EWFAEKRQRQPGTFRVFVELKDKGISEKIYQELERLIEDAKPVSRHITELAVSATSKG
                     KANIFSGAHSGEIITIYPPKKLPVIVIKSKMDLFSATNSGEIITIYPNKR"
     gene            5949..>6487
                     /locus_tag="PXE26_002103"
     CDS             5949..>6487
                     /locus_tag="PXE26_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015981653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5594653.1"
                     /translation="MEQKYKTILTHHGERVIVEALANKIPVPLKEMAIGDGNGSSITP
                     SASQTTLVREVYRAEITDLLEDPQNRHQMIAELLIPENVGGFIVREIGLFDEQGGLVA
                     VANCPENYKPVLEQGSGKVQYYRMILQVSSSDAVTLSINNNIVYATRTEFNEFVNNLS
                     SPDGYKHIGRCKSVAELRT"
BASE COUNT         2150 a         1220 c         1475 g         1642 t
ORIGIN      
        1 ttatctcaat ctttaaaagt acagagagat gaattaaaag cattggaaaa aacacaaagt
       61 aaaatgcaat catttaaaaa aatggacgat agcattaaga aatccaatga aactatactc
      121 aaacagacaa agcatttaga taatctcaaa aataaaatca gccaaatgaa aaatgaacga
      181 attgagctga aagtgaaaat ggatgcgaaa aaaagggaat ttcaacaaat tacgaaaggt
      241 ggttcagctt ggagtgcaag agccgcattt ttagataaag attttgaaaa aatgcaaaga
      301 gaatatgaaa aactcggtgc atctatttca agtgtcagcc gaaaaagaac agaagaaaat
      361 cgggcattaa aggattctcg ccatcaacaa gctaagcaac ttttatattt tcgtagttta
      421 agacgtgaat tgagagcaag cggcattaat attaaagctt ttgctcaaag cgaaaccaac
      481 ttaacagaca agattgcaaa agcaaatcaa ttaatcgacc aacaaaaagc aaaattagaa
      541 aaactaaatg cggttaaagc tcgaaatgaa aaatattggg caactgtcga aaaggtaaaa
      601 aataccagcg aacgtttgca taatttagga caacgctcaa tgattagtgg tgcggcaatt
      661 tctgcccctg ttgttgggct agggaaaggg gttgtcggaa tggctcaaac agcgggtaaa
      721 tttgaacaat ttaatgctat tttagaggta accgagggaa gtgctgaaaa agccaagcaa
      781 agttttgatt gggttaaaca atttgcagta gataccccct caaaccttga tgaagcaatg
      841 gaagcctttg taaagttaag agcatacggt cttgatccta ccaatggctt actacaaaca
      901 ttaggtgata caggtgctgc aatgggtaag cctgtaatgc aagcagttga ggcaatagca
      961 gatgctttaa cgggtgagaa tgaacgctta aaagaatttg gtattaaagg aagtgtagtt
     1021 aaaggtacaa atattattga gtatgcctac actgataaat taggcaaaca acaagtcgca
     1081 aaagtaaaca aaaataaccg aaaagaaatt gagcaaaccc taacccgtat ttttaacgaa
     1141 aaatatgctg gagcaatgga aaaacaagct aaaacgctag ttggtatttg ggcaaaaatt
     1201 gaagattatt ggacaaattt ccaaatgcaa gtgatggaat cgggagcatt tgactggatt
     1261 aaaaataaat tgcaatgggt gttagacagt ttagataaaa tggctgaaaa tggcgagttg
     1321 caaaaatggg ctgaagatgt cggagccgtt attcaagaaa cagtacaagg cttatgggct
     1381 tttggtgaaa aaattattga agtggttaaa tggttagcga gcttggcacg ggagaataaa
     1441 gggctaattg caacattcgt taaatggtct gctattcttg gctctagttt aacggtgcta
     1501 ggagcttttg cagtggtggc aagttttgca ttatatcctg tagcaagatt ggctcttggt
     1561 atcggcaaat ttacaggtgc aagcacctta ttaaataagg cattatttga tagtaatgat
     1621 aaattccgat tattcaataa atcactttat tcatcaggca ctacggctgc ttttgttaaa
     1681 tcaaaattta atcagttagc aactttacca aatgtgctgg gaagtagttt taataaatta
     1741 ggcggtggca tcaaaatgct aattccacag cttaaaacaa aagtattttg gctcaatatg
     1801 ctaaaaggta ttttaggcaa gttgtggagt gcaatccgtt ttattttctc accgttgaaa
     1861 ttattacttg gtattttctc gccgattggc ttagcgatta cagctatttc ggtagcaggg
     1921 gtagcgttat atagaaattg ggagaaggtc agagcctttt ttggaggctt tttgcaagga
     1981 ttatctaaag gtcttgcacc agtattagag agatttaaac ctttaggaaa actatttgaa
     2041 actatatcaa actgggttaa atctacgttt aagtggttat ccgatttatt aaccccagcg
     2101 gataaaacat cggaaagttt agataaagcg agttctgcag gagaaaaatt cgggcttgca
     2161 ttggctggtg caatagactt ggtaacatca cctgttcagt ggctagtcga tcagtttaag
     2221 tggatttctg aaaatatgcc gagttgggac actattggtg agggtgtaaa aaaggcagct
     2281 actgcaattg ttcccaccga gcacgccaag cagattacta aaacggcaga aatgtcaaac
     2341 aatatgtatg accccaatta tactccacca caacttgagc aaaaatggat tggtggcttg
     2401 gttggtaacg gtaaaggaag aggttttgcc acaggcggct acaccggcaa tggtggcaaa
     2461 tatgagcctg ccggtattgt gcataagggc gagtatgtaa tgaccaaaga ggcaactgca
     2521 cgcttgggtg tggcaaatct taaccggtta aattatggca aagttgctgg gctaactgca
     2581 cttgcgtcaa gtgttgcgtt tgctcaacca atgcctgcgg tcaaaatcga cagcagacca
     2641 ccgctgacgg caagccaacc aagcccaaca gttgcaccgg tgtcgcaaaa tatccatatc
     2701 accatcaacg ccaccggtgg gcaagaccca caagcaatcg cccgactggt tgcaatggag
     2761 ttggaaaaac aacaacgcca agcacaagca agagcaagat cgtctttgag agacaggggc
     2821 taatttgaca aagtagaatg aaaagcggac aatgctctaa attgtccgct ttttatagga
     2881 gcaaatgatg tttaaagaaa aaggatatga tgaatttgtg aatgaatgtg tgcgaaaagg
     2941 tagagaagaa cacaaagctg gtttaggatt tacgctagag caatctcgct tacatatcaa
     3001 aaaaaccatt gagcaaaaat cacaagagct aaacgaattt cagcgtgaag tggtttatgg
     3061 ctaaaattac cattaaacca caagcattga gtcaatttga cgagattgta aaaagtgtta
     3121 tcgaatttac cggttttgaa acgagtggta ttcgattaca aagtgatatt tttgacaaaa
     3181 tagagcaaat tgcatttatg ccactctctg gaagagcaag agaagatggg acaagagaaa
     3241 ctttcgtcag acgttatcgt attgtgtacg attacgatag gcaggcagat gaagtaatta
     3301 tcttagctat cattcacagt agccgacttt acccacgccc ataatcagta agcgacctaa
     3361 tcggtcgctt tttctttgcc tgttaaaacc catttcacac ctcgcattta tacccaaagc
     3421 ctttcgcctt ttgcaaaata tcctcatttt ttaaccgctt gtaattgtaa aaatgagtga
     3481 gccaaaccac gccgaacaaa tccgccgttt agacaatatt atccgacttg gcactattgc
     3541 cgaggtggat ttaaccacag cgactgcacg ggtcaattcg ggcggtatta cgaccgattt
     3601 cttaccgtgg ctgacttttc gtgccggtac atcgcaaacg tggtcagctc caacagttgg
     3661 cgagcaatgc gtggtgttaa gcgtgagtgg tgaatttacc acaggcgtga tcttatttgg
     3721 gatttacacc caaaacgccc cgagccaatc cgccgatgag catctattcc gcttttcgga
     3781 cggtgcagaa atcagctaca acaccgcaag cggtcaatta accgtaaaaa attgcaaagt
     3841 ggtgattgtg caggcgacag aatctatcac gctcgacacg cccacggtta aggccacaaa
     3901 aaatgtcgtg attgggggca acctatccgt gaaaggcaca acctcatcgc aaggtgcaat
     3961 cagcacacaa ggggcggtaa cagcaaaagg cgatgtatca ggggcgggaa tcagtttagg
     4021 cagccaccat cacattgagc aaggtgacgg cagaccaact agcggagcaa aaccataatg
     4081 aaccgagaaa caggcgaaca gcttgaagac gaagtagagc atatcaagca gtctatcaaa
     4141 gatattttgc tgacggcaaa aggcagtcgg gtaatgcggc gaacctatgg cagtaatctc
     4201 tacaagctaa ctgataaacc gattgccgca agtctgatta tgcaactctc cgctgcgtgc
     4261 gtgatggcgt tgcagcaatg ggagccacgt atagcgatca cccgatttaa agtggaattt
     4321 gccgaagata actacaataa gctgatttgc accttagatt ttacccttaa gcaccgaaaa
     4381 atcagcatca aaggaatgcg ttttacacta tgagcgaaat tgtcgattta tccaaactcc
     4441 ccgccccgaa agtactggaa gaattggact atgaaacctt actggcagag cggaaagcca
     4501 agtttttatc cctctaccca gaaagcgaac gagcggtaat ggctgcacgg ttagcgttgg
     4561 agtctgagcc tatcaccaag ttactacaag aaaattgcta tttgcagcta ctcgaacgcc
     4621 aacgcattaa tagtgcggct caagccacaa tgcttgctta tgctaccggt acggatttag
     4681 atgtcatcgc agccaacttt aatgttgagc ggcttgtagt gcaagctgaa gacttaactg
     4741 caagcccgcc tatcgtcgaa gagttagagc ctgatgatga tttccgtcag cgtgtgcagt
     4801 taaaaattga aagtgtttcg gttgccggtc cacggaaggc ttacaccttt cacgccctgt
     4861 ctgctaacgg aaaaattgcc gatgtgtccg tcatatcacc acagccagct tatgtaacgg
     4921 taacgctgct ttctcgtgat ggcaacggag ccgtagcctc agaaatcatc aatgcggcca
     4981 aaattgctct caatgatgaa gaggttagac cgattgccga tagagtaacc gtgcaagggg
     5041 caagcattgt ggaatatgaa attaatgcgg tgttgcatct ctaccgtgga cctgagaaag
     5101 agcctatttt aaaagcggca aaagctaact tagaggctta catcaaccaa acaaaacgca
     5161 ttggacgaga tgtgactcac tcaggtatcc acgccgcctt gcacgttgcc ggtgtgcaaa
     5221 atgtggaaat tttgcagccg agaactgatt tggtgctgac accttaccaa gccggttatt
     5281 gtgtcaatta cacgctaaat gttgaggtga gcgatgaata cagttaaagc attattgcca
     5341 cccggttcat cacttttgga aaaacgagct gccgaatgtt tgcaacaagc ggtacaaaat
     5401 ccgattaaat ttgcaaattt gattaatcca cacaaatgcc ccgtgaaatt tttgccctat
     5461 cttgcgtggg ccttatcggt ggattattgg gaagagcatt ggagtgaaga attaaaaaga
     5521 gaaaccatta ttcgatcttt tgaagaacac cgaaagaaag gcacagcaag tgcagtgcga
     5581 agaattgtgg aatctctcgg ctatgctttt gaaatccgtg agtggtttgc ggaaaaacgg
     5641 caacggcagc ccgggacgtt tagggttttt gttgagttaa aagataaagg gattagcgaa
     5701 aaaatctacc aagaattaga aaggttgatt gaagatgcaa aaccggtatc aaggcacatc
     5761 acagaattag cagtatcagc cacctcaaaa ggcaaagcaa atatttttag tggagcacac
     5821 agtggcgaaa ttattacgat ttatccacct aaaaagctcc ctgttattgt cattaaaagc
     5881 aaaatggatt tatttagtgc aacaaacagt ggcgaaatta ttacgattta tcctaataag
     5941 aggtaaaaat ggaacaaaaa tataaaacaa tattaaccca tcacggtgag cgagtgatcg
     6001 ttgaggctct tgcaaataag ataccagtgc cacttaagga aatggctata ggagatggta
     6061 acgggtcatc aataactcca agtgcatctc aaaccacact tgtaagagaa gtttatcgtg
     6121 cggaaattac agatttgcta gaagacccgc aaaatcgcca tcagatgatt gctgaattac
     6181 taatcccaga aaatgtaggt ggatttattg tccgagaaat agggttattt gatgaacaag
     6241 gtggtttggt tgctgtagca aattgccctg aaaattataa gcctgtatta gaacaaggca
     6301 gtggtaaagt ccaatattac cgaatgattt tacaagttag tagtagtgat gcggtcacct
     6361 tatcgattaa caataatatt gtttacgcca caagaactga gtttaacgaa tttgtaaata
     6421 acttgagtag tcctgatggc tataaacaca tcggacgctg caaatctgta gcagaactcc
     6481 gcactat
//
LOCUS       DANLZD010000134         6460 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.134, whole genome shotgun sequence.
ACCESSION   DANLZD010000134 DANLZD010000000
VERSION     DANLZD010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6460)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6460)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6460
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.134"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..706)
                     /locus_tag="PXE26_002104"
     CDS             complement(<1..706)
                     /locus_tag="PXE26_002104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5594654.1"
                     /translation="MSIYRRKANGPWWVDITTPNGKRIKRSTRTLVKREAQQYHDKLK
                     QEMWAEDKLEEKRKYIFEDALLHYVRAAEELKDKATKKRHAEYWLSKFAGRELSSLTA
                     QEIILNIPKKNANTKKPLSHSTQNKYVKSLSRVLNIAHKLGMLDAVPHIPKKKEPPIR
                     VRWITKEQAKQLIDKLSSDWMKSICKFALMTGARRTEILTMTWDKIDLVRKVAIVTND
                     VAKSGKARSLLLNQEAI"
     gene            complement(610..933)
                     /locus_tag="PXE26_002105"
     CDS             complement(610..933)
                     /locus_tag="PXE26_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5594655.1"
                     /translation="MEHLTINQVAKELNCHPNTVRQHLADWGFFKMVGSEVWRINRED
                     LERAKKRAGIDPIRKRSDNDRGLSLSVEENEKCRSTDEKQTVRGGLISQPQTARELRE
                     ALARL"
     gene            complement(1014..1181)
                     /locus_tag="PXE26_002106"
     CDS             complement(1014..1181)
                     /locus_tag="PXE26_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HDL5594656.1"
                     /translation="MQFTYGSICSGIEATSIAWHGLGKPLWFSEIEPFPCAVLAHRFP
                     NVPNGNGMAVP"
     gene            complement(1189..1563)
                     /locus_tag="PXE26_002107"
     CDS             complement(1189..1563)
                     /locus_tag="PXE26_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594657.1"
                     /translation="MHIEDKIAWWLANGETGVSSKTMAFYLGYGIRPKIEGYPHDVSD
                     FRRCFLLLETVPFLRNRIEKMAELGKVWAALAKEWHTLEALYNEEECQIRCPKTYAKL
                     REILEANEENVVRIGNLSISIG"
     gene            1713..1940
                     /locus_tag="PXE26_002108"
                     /pseudo
     CDS             1713..1940
                     /locus_tag="PXE26_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609911.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
     gene            1965..2360
                     /locus_tag="PXE26_002109"
     CDS             1965..2360
                     /locus_tag="PXE26_002109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5594658.1"
                     /translation="MKIHTQIRKEILSLLEAKLTDIEHFYNGQPNFIDIDEQQLAISV
                     YLDEINRQELTLCDEQWTAQLNITIYLKSVDEAEDELDEWAEKIREVVETYSAFEHLE
                     GFSLSQYQYEQDQNQRTWHSATLIFDVEY"
     gene            2392..3033
                     /locus_tag="PXE26_002110"
     CDS             2392..3033
                     /locus_tag="PXE26_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594659.1"
                     /translation="MAKTTKVQGTKFRIGIGREAQKAITAITLATATLTIATSGYKKG
                     DAIEITGCGQLDGIYPVLSVTGDQVKLCEEVNWTGKDLPANYTKAKAALVQYSDQFCA
                     VKNIEKSDDTLSTEDVTTVCSEGTETEPGEIEFGSIKLSFFHKPSTEMQTRLRKLFYD
                     KSTFAYKLELPDNHGTTYGEGFIEAGNGFSGEVKGKYEGSVSIKPSKRDYLLV"
     gene            3116..3517
                     /locus_tag="PXE26_002111"
     CDS             3116..3517
                     /locus_tag="PXE26_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594660.1"
                     /translation="MTLREKLLANKPKLQSIEINGETYYLREATVGDMNKQIFETRSW
                     LIQQAEQENVELPAEDDETFDEALNRFGEKYRLAQSVAYRLCDENGALLFNPLNIDDL
                     NAIAELDSKVIIDFNQAVSAPKDSASEESSK"
     gene            3562..3792
                     /locus_tag="PXE26_002112"
     CDS             3562..3792
                     /locus_tag="PXE26_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HDL5594661.1"
                     /translation="MPERHFAEYQLFYQEQPFGLWREDYRAAQLAHLTAMINRDPKGK
                     APELSEFMPFFNRADEVEANEDDGVADYLAKR"
     gene            3860..4126
                     /locus_tag="PXE26_002113"
     CDS             3860..4126
                     /locus_tag="PXE26_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HDL5594662.1"
                     /translation="MATINDAFSFRTNTEIKNTAFDVIKNYGMTPSQVFNMFLTEIAK
                     TKTIPLSLNYQPNLETKLAMQEAKSGKNEVYASLEAFHKAMLAE"
     gene            4130..4399
                     /locus_tag="PXE26_002114"
     CDS             4130..4399
                     /locus_tag="PXE26_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="HDL5594663.1"
                     /translation="MLQISPTNAYKRDFKKIAAELVGSSEYVEVMYCLINQLPLAEKY
                     RDHPLQGEWQGFRDCHIKPDLVLIYAVEDNLLRLVRLGSHAELFG"
     gene            4474..4737
                     /locus_tag="PXE26_002115"
     CDS             4474..4737
                     /locus_tag="PXE26_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594664.1"
                     /translation="MKNVLLFIVHFFLIAMLSIIPILIILGAIERDPYYTAWIFLSVF
                     LGIGALLYFATIVSKLINKGKTQTLEEKRYAEYWNNVKVNIPK"
     gene            4797..5507
                     /locus_tag="PXE26_002116"
     CDS             4797..5507
                     /locus_tag="PXE26_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
                     /protein_id="HDL5594665.1"
                     /translation="MSGLGKLTVTLELENAKFQSAMTKSDYEAQKFAKNFIQNMDRAR
                     NHAKEFADRSTQYLKNIEQAAKNLNKNSEFSFLSTIGGHYQSMSSGILSAAKAYTDIQ
                     NKMKLVSGSSAEAAKRLTDVFDIATKTSQSTEAVSGVYQTFAQNAQSLGLAQKDVAEL
                     TKTVSQAVAASGASSSAASNALTQFGQSLLMGKMKAQEFNSLITQTPTIIQAMAKGLG
                     MTMAEFKAAVYRAKSLLG"
     gene            5485..5775
                     /locus_tag="PXE26_002117"
                     /pseudo
     CDS             5485..5775
                     /locus_tag="PXE26_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484718.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
     gene            5765..>6460
                     /locus_tag="PXE26_002118"
     CDS             5765..>6460
                     /locus_tag="PXE26_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDL5594666.1"
                     /translation="MKFSKYQLLVNKICFICGKKDCPQMKKSKDYKDFLDALEKGDVD
                     KADKIYNTKFSQFSKSFGHEMEKNLEKNRIPPIYQGVPFDSFDLYQHYSYGNGEALNL
                     SSVGLSNKIRPLVNKDKAFGKSNGSIESRFISQYKNEGRTSFSNAYDFTKEASGIADP
                     LWALGTATISGELKDIQIFPGGIARGNIHYSIRDRFTDPFDTFNFTKGEWNPNGTPYI
                     IQDSWIKSVRFSID"
BASE COUNT         2050 a         1276 c         1248 g         1886 t
ORIGIN      
        1 taattgcctc ttgattcagt aatagcgatc gtgccttacc tgatttagcg acatcattag
       61 tcacgattgc tacctttctt acaagatcta tcttatccca agtcattgtc aaaatttctg
      121 tccgtctggc tccagtcatc aaagcaaact tacagataga tttcatccag tctgaactta
      181 atttatctat tagctgtttt gcttgttctt tggtgatcca gcgtacacga attggcggct
      241 ctttcttttt cggtatgtgt gggactgcat ccaacatacc aagtttatga gcgatattta
      301 atactctcga taaagatttc acatacttat tttgcgtact atgagataga ggctttttcg
      361 tatttgcatt ctttttcggg atatttagga taatctcctg agctgttaaa gagctgagtt
      421 cacgaccggc aaatttggat aaccagtatt cagcatgtcg cttttttgtg gctttatctt
      481 ttaattcttc ggccgcacga acgtaatgga gcaaagcatc ttcaaagata tattttctct
      541 tttcctcgag tttatcctct gcccacattt cttgcttgag tttatcgtga tactgctgag
      601 cttcacgttt tacaagcgtg cgagtgcttc tcttaattct cttgccgttt ggggttgtga
      661 tatcaaccca ccacggaccg tttgcttttc gtctgtagat cgacattttt cattctcctc
      721 gaccgacaga gataaccctc ggtcattatc agatcgtttt cttattgggt caataccggc
      781 tctctttttt gctctttcca aatcttctcg gttgatccgc caaacttccg agcctaccat
      841 tttaaaaaat ccccaatccg ccaaatgttg gcggactgta tttggatggc aatttaattc
      901 ttttgccact tgattaatag taagatgttc cattcattac tttctccaaa ataaatccct
      961 ctaaacgagg gattgtacta aataatcgtt aagtctttgc cttatccact gcatcaaggc
     1021 acagccatac cgtttccatt tggcacattg gggaaacggt gagctaatac cgcacagggg
     1081 aatggctcaa tttcagagaa ccacaaaggc ttacctaaac cgtgccacgc tatacttgta
     1141 gcttcgatac cgctacaaat tgagccgtag gtgaattgca ttttttacct atcctatcga
     1201 aatactcaaa ttcccaatac ggacaacatt ttcttcgttg gcttctagga tttctctcaa
     1261 cttagcatag gttttggggc atcttatttg acattcctct tcgttgtaga gagcctctaa
     1321 tgtgtgccat tcttttgcaa gtgcagccca aactttccca agttcagcca ttttttcaat
     1381 cctatttcgc aaaaaaggga ctgtctccaa caacagaaag caacgcctga aatccgatac
     1441 atcgtgtggg tagccttcta tttttggtct tattccgtaa ccaaggtaaa aagccattgt
     1501 tttactgctt acccctgtct ctccattggc aagccaccaa gcgattttgt cttctatgtg
     1561 catttttcct ccaaaaatta accgcttgcg gaacaagttc tacaagcggt tgtcaagtgt
     1621 tcatttgttc aatgaacagt tcattgtgaa taacaaaacc gcttgaatta caagcggtct
     1681 attttgttgc gtaaatttac tgttagcgtt gagccataac cgactacgac cgctggcccg
     1741 aagatattga cggcgagggg gacggcttct cgcttgcctc caaacggacg accactttta
     1801 tgtcagccgg aatgacttta gtggagagtt cgcctggtaa agatattgtc gatctcaaac
     1861 atatcccgaa aagtagccac gaagccccac cgactaccgg tattttaagc ctctacaatc
     1921 gaggcgaccg cagacgcttt agcgaaacag ttgataggta agctatgaaa atccataccc
     1981 aaatccgaaa agaaatcctt tcattattag aggcaaaatt aacggacatc gagcattttt
     2041 ataacgggca accgaatttc attgatattg acgaacagca acttgccatc tctgtttatc
     2101 ttgatgagat taaccgtcag gagcttacct tatgcgatga acagtggaca gctcaactta
     2161 acatcacgat ttatctaaaa tcagttgatg aggcagaaga tgaattagat gagtgggccg
     2221 aaaaaatccg tgaagtggtt gaaacatatt ctgcgtttga acatttagag ggcttcagcc
     2281 tttctcaata tcaatacgaa caagatcaaa atcaaagaac ttggcactca gccacattga
     2341 tttttgatgt tgaatactaa caagcaaata atccttatag gagaatctac aatggcaaaa
     2401 acaacaaaag tccaaggcac aaaatttaga attggcattg gacgtgaagc ccaaaaggca
     2461 attacggcta tcactttagc tacagcaacg cttactattg ccacatcagg ctataaaaaa
     2521 ggcgatgcaa tcgaaattac cggttgtggt cagttagacg gcatttatcc tgtattatct
     2581 gtaacaggcg atcaagtcaa attgtgcgaa gaagtaaact ggacgggtaa agatttaccg
     2641 gctaattaca ccaaagccaa agcagcttta gtacaatact cagaccaatt ctgtgcggta
     2701 aaaaacattg aaaaatctga tgatacgtta agtaccgaag atgttacaac ggtctgctcg
     2761 gaaggtacag aaaccgaacc cggagaaatt gaatttggct caattaaact gagctttttt
     2821 cacaagccaa gtacggaaat gcaaactcgc ttacgcaaat tgttttatga caaatccacc
     2881 tttgcgtaca aattagaatt acctgataac cacggcacaa cctatggcga aggtttcatt
     2941 gaggcgggta acggctttag tggcgaagtt aaaggcaaat atgaaggctc ggtatcaatt
     3001 aaaccaagca aacgtgatta tttgctagtg taattacaaa atattgctcc aaatcgaccg
     3061 cttgtaatat tgcaagcggt cttttttatc ctaaatttta caaaaggaat cgacaatgac
     3121 actccgtgaa aaactcctcg ccaacaaacc aaaattacaa tctatcgaaa tcaacggtga
     3181 gacctactac ctgcgtgaag ccactgttgg cgatatgaat aagcagattt ttgaaacccg
     3241 aagctggctc attcaacaag ctgaacaaga aaatgttgaa ttaccggcag aagatgatga
     3301 aacctttgac gaagctctca accgttttgg cgaaaaatac cgccttgctc aatcggttgc
     3361 ctaccgttta tgtgacgaaa acggtgcatt actgtttaac ccacttaaca ttgacgatct
     3421 caatgcgatt gccgaattag acagtaaagt gattatcgac tttaaccaag ccgtgtccgc
     3481 cccaaaagac tcagcgagcg aagaaagttc caaataaccc tttcgctcgc actgggtaaa
     3541 acccttgaag aaatcgaaca aatgcctgaa cgccactttg ccgaatatca gcttttttat
     3601 caagagcaac cttttgggct ttggcgtgag gactatcgtg ctgctcaact tgcccactta
     3661 accgcaatga tcaaccgtga cccaaaaggc aaagcccctg aactctcgga atttatgccg
     3721 ttttttaatc gggctgatga agtagaagca aatgaagatg atggcgttgc ggattatttg
     3781 gcgaaaaggt aaatctcttg tatttcattg taattctgtc tataattggt gtaatacata
     3841 gaaatacagg agagataaaa tggcgactat caatgatgct ttcagtttta gaacaaatac
     3901 cgaaataaaa aataccgcat ttgatgtaat taaaaactat ggaatgacac cctctcaggt
     3961 gtttaatatg tttttaaccg agattgcaaa aacgaaaact attccgttaa gtttgaatta
     4021 tcaacccaat cttgaaacaa aattggcaat gcaagaagca aaatcaggta aaaatgaagt
     4081 ttatgcctca cttgaagcat ttcataaagc aatgttagcg gagtaaataa tgctacaaat
     4141 ttcgccgaca aacgcatata aaagagactt taaaaagatt gcagccgaat tagtcggtag
     4201 ttcggaatat gtggaagtaa tgtattgcct aataaaccaa ttaccattgg cggaaaaata
     4261 tagagatcac ccactacaag gtgaatggca aggctttaga gattgccata ttaagcctga
     4321 tttagtgttg atttacgctg ttgaagataa tctgctccgc cttgttcgtt taggatcgca
     4381 cgctgaatta tttggataat ttctgtaaaa actaaccgct tgcgattttg tgctgtgggc
     4441 ggtatagttg gaatattaac aaaggaggga aaaatgaaaa atgtacttct atttatcgta
     4501 cactttttct taatcgcaat gctctcaatt atcccaatat taattattct tggagcaatc
     4561 gaaagagatc cttactatac tgcgtggatt ttccttagcg tatttttagg cattggagca
     4621 ttgttatatt ttgcaaccat tgtttctaag ttaattaaca agggaaaaac acaaacatta
     4681 gaagaaaaac gatatgcaga atattggaat aatgtaaaag tcaatattcc caaatagtct
     4741 aactgataaa tgaccaaaag ctcgctttat gcgggctttt ttattggaga aaaacaatga
     4801 gtggcttagg aaaattaacc gttaccttag agcttgaaaa tgcaaaattt cagtccgcaa
     4861 tgacgaaatc tgattatgag gcacaaaaat ttgccaagaa ctttatccaa aatatggata
     4921 gagctagaaa tcacgccaaa gaatttgccg atcgctcaac ccaatattta aaaaacattg
     4981 agcaagcggc aaagaacctc aataaaaatt ctgaattttc atttttatcg actattggtg
     5041 gacattatca atcaatgtct agtggcatat tgagtgcggc aaaagcctat actgatattc
     5101 aaaataaaat gaaattagta agcggtagtt cagcagaggc agctaaacga ttaactgatg
     5161 tgtttgatat tgcgactaaa acaagccaaa gtacagaggc tgtttcaggt gtctatcaaa
     5221 catttgctca aaatgcccaa tctctcggac tggctcaaaa agatgtagca gaattaacta
     5281 aaacggtctc tcaagccgtt gctgcaagcg gcgcaagcag ttctgcagca agtaatgccc
     5341 taacccaatt tggtcaatca cttttaatgg gcaaaatgaa agcccaagaa tttaactcgc
     5401 tcattactca aaccccaacc attattcaag caatggcaaa aggtttggga atgacaatgg
     5461 cagaatttaa agcagcggta taccgggcaa aatctttact tggataacat tcaagggcaa
     5521 ggttttgaga gagtggatac accccaaatc ggcgatgtga ttttaataca ggtcggttct
     5581 gatgtgccga atcacgcagc gatttatatt ggtgaacaaa tggtaatcca ccatagcccg
     5641 aaccgattat ctaagcgtga tttatatgac ggttattggt tacgccatac ccacagtatt
     5701 tggcggcata aactggcgga tagattggat tttgacggca tatttaatga tataggagaa
     5761 caatatgaaa tttagtaaat atcaattatt agttaataag atctgcttta tttgtggtaa
     5821 aaaagattgt ccacaaatga aaaagagtaa agactacaaa gactttttgg atgctttaga
     5881 aaaaggggat gttgataaag cagataaaat atacaatacg aagttttcac agttttctaa
     5941 atcttttggt catgaaatgg aaaagaattt agagaaaaat cgtatacctc ctatttatca
     6001 gggagttcca tttgattctt ttgacttata tcagcattat tcttatggta atggagaggc
     6061 attaaatctt tcatccgttg gattaagtaa taaaattcgt cctctagtga ataaagataa
     6121 agcatttggt aaatccaatg gaagtataga aagccgattt atttcgcaat ataaaaatga
     6181 aggacgcaca tctttctcca atgcttatga ttttacaaaa gaagcatcgg gtattgcaga
     6241 tccgttatgg gcgttaggaa cagctaccat tagtggagaa ttgaaagata tacaaatttt
     6301 tcccggtggt attgctaggg gaaatatcca ttatagtatc agggacagat tcactgaccc
     6361 atttgataca ttcaatttta ctaaaggaga atggaaccca aatggaacac cttatattat
     6421 tcaagatagc tggataaaat cggtacgatt ttcgatagac
//
LOCUS       DANLZD010000135         6437 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.135, whole genome shotgun sequence.
ACCESSION   DANLZD010000135 DANLZD010000000
VERSION     DANLZD010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6437)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6437)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6437
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.135"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..1791
                     /locus_tag="PXE26_002119"
     CDS             <1..1791
                     /locus_tag="PXE26_002119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5594667.1"
                     /translation="AMARQPARNQMEFDRQLAMVANTAFSDRDVKGRIDGKRELLDAV
                     QKAVSVGGGSKEEALSSLDALLASGAVSTETALNLLPTLQKGAVATGASANDMAQIAI
                     SSMQQFGIKEEDIGRVLDMAVAAGQAGSFELADMASWLPQQMAAAKQAGLSGIEGFER
                     LLIANQQARVTAGTSNEAGNNLVNLLGKITAKETNERFKNIEYKDPKTGKTKAIDFAK
                     SMEHYKGKGQDSLQAFMSIMDDVVGSDKRYQELQAKLKTAKGEEQKRLFNELTNLVEG
                     TAIGEIISDRQALMALLGIKNNVQLGEKVQKDIQNSEGAVETSHAVIRDTNAHKVESL
                     KNTTEFAQMKNFEKVNGVLGTLAELLNKYANEYPNLTQFLSGATDAVKIFGAALAASS
                     VLDLLTGKKDKGGLIGDVLDKSSKASGGKGKVGKLLSVGGSFASVAGVATMLHGDQAP
                     MSEERKAELRDPNYQARKMYEYKKEILGSRFHSFFRSNETLEQYRKDVSAYEAKQKNS
                     NTMGAVQGVLSTIPSLQELRPKVDSVTQTLSTYQADFQAFGATISAGIEAGLASQSHT
                     IANQITVELDGSVVAEKVAEYQFNFNKRMA"
     gene            1791..3083
                     /locus_tag="PXE26_002120"
     CDS             1791..3083
                     /locus_tag="PXE26_002120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA circularization protein"
                     /protein_id="HDL5594668.1"
                     /translation="MSGWTMPIQQASFKGVRFDVLAVDDSFERAVVEHAYPFVNGADL
                     EDMGLNTQTIRLQAVFFGSSYYTDYIRLLSVLQQKGADVLVHPIRGRLPNMLLVSANL
                     HTDAENINYVALDLTFKEATEMQPIFAFEDSLISKIDKLLLDLENLFDDGLRFWDSVG
                     VFDLKSRLLGLWGALFASFEAVRNLFDLDKKKYSIASSTSQRTYLRDGSGALNQLKEM
                     VDSGIQGRADLTTLSFKSQLLNITDAIDNTQAIVSKVARDEGFNRSKTVKLLGSDVVE
                     LGIMLDLIATTKLTKVLTELVEEREEELLIGDLELINQIVREHWLNIINKLREQQKNT
                     QKGVPSDKTKVIYETAEKLINNIRNVAHQFTALVLAVINKKPPLTVRMVMDSGTIHKV
                     AHAFYGDYERADELLRLNPHIRQPNFIERGTLLNCYWE"
     gene            3086..4213
                     /locus_tag="PXE26_002121"
     CDS             3086..4213
                     /locus_tag="PXE26_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5594669.1"
                     /translation="MENEIVVEIDGSQHKNWKSYDIDSDFLIPADSFNFELGKSSNIE
                     VLPNYSGKTAIVKINGKTVLTGIVDTTHHTISKSGRGFSLNGRDKAAILVDCSAPITN
                     VQGLSLLDAVKKIVTPLGIKEVQLKAEKNPTLSKVDIDVGESAWEAIMRCANSAGLHC
                     WFDPKGVLIVGGADYAQPPVATLYCVKESGDSRKNNFVDATLSYDVSQSYSEVTFLAQ
                     KHGKDSDNAKHDFKWVYKNEEMELYKPKTIVLGDVENLEALMKQAKKQVSDWQLESFN
                     LTIIVPDHKTKDGTLWQAGQRVHVVCEEYDLDGIFFLMGRRFRLSRTGGTTTELRLKL
                     DGVWTPDAYQAKAQEARKRKGKKGRKKKEPVEYVGSWELGK"
     gene            4215..4877
                     /locus_tag="PXE26_002122"
     CDS             4215..4877
                     /locus_tag="PXE26_002122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL5594670.1"
                     /translation="MMRKLAKQTKEVAKGVQDSVRAAFRGVLNLVKSGSDMQQVQVSA
                     LADETIQDLELMQHFGFTSVPPAGTQAVVIPLGGKTTHGIIVATENGSFRVKNLKNGE
                     TAIYDSSGSTIILKNGRVIDIECDSFNIKCKQYSVTASGGANFNTPKLETDQQFVSQG
                     QISGNGGMVVQGGSGASFTGSLTQQGGSISTDGDVVASGKSLVTHQHNEQGDGRPTSA
                     PI"
     gene            4996..5346
                     /locus_tag="PXE26_002123"
     CDS             4996..5346
                     /locus_tag="PXE26_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage GP46 family protein"
                     /protein_id="HDL5594671.1"
                     /translation="MDREISPLTRDYTSENITTLQNAVYIRLTTPKGSWWADGRVGSL
                     LHLIQREKDLSRVGLLAQQYAEEALQPIIDDGRAKSITVTHEQPKDGSLNLLISVIDN
                     RGVKFEFKHPVKLV"
     gene            5359..6420
                     /locus_tag="PXE26_002124"
     CDS             5359..6420
                     /locus_tag="PXE26_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDL5594672.1"
                     /translation="MYQIPTLEDVRREILRDIQSLEPTADIEVDSDYFVRASALASCV
                     VGLYAHQNWIVRQYFPDTADSEYLEMHAKLRNLYRKNATYASGSLKVFGTAGSVINEG
                     LQVKFGERFYVTKSSDVIGDDGSATVRVISMATGASSNVKSESKAQLTAAPAGVSSDC
                     LLLPDVTGGTEVESDAALLARLLEQIRRPPSGGNKNDFRQWAESVDGVTSAFVYPLRR
                     GEGTVDIAITSGDTVPSDEIVRATQAYIDEVRPVTAKSVYVLKPVEKRVNFNIKVQLD
                     TDTTLDGVKAEIENALENYFLSLKPADTLIISQIEAVISDLVGVVDREIVQPTRNQTI
                     DAYREMGWFRLGDVTVELM"
BASE COUNT         1900 a         1190 c         1616 g         1731 t
ORIGIN      
        1 gcaatggctc gccagcctgc aagaaatcaa atggaatttg atagacagct tgcaatggta
       61 gcgaataccg ccttttcaga tcgtgatgtg aaagggcgta ttgatgggaa aagagagtta
      121 cttgatgccg tacagaaagc agtaagtgta ggcggtggct caaaagaaga agcgttgagc
      181 tcactagacg ctttacttgc ctcaggtgct gtttctaccg aaaccgctct caatttactc
      241 ccaacgttgc agaaaggtgc ggtcgcaaca ggggcaagtg caaatgatat ggctcaaatt
      301 gctatttcct caatgcaaca atttgggatt aaagaagagg atattggtcg agtcttagat
      361 atggcagttg ccgctgggca agccggtagc tttgagcttg cagatatggc aagttggttg
      421 cctcaacaaa tggccgctgc aaaacaagct ggcttaagcg gcattgaggg atttgagcga
      481 cttttaattg caaaccaaca ggctcgtgtc actgccggta caagtaacga ggctggtaat
      541 aatttagtga atctgttggg taagattact gctaaagaaa ctaatgagcg ttttaagaat
      601 attgaatata aagatccgaa aactggcaaa accaaagcga ttgattttgc aaaatctatg
      661 gagcattaca agggaaaagg gcaagattca ttgcaggctt ttatgtctat tatggatgac
      721 gttgtcggga gtgataaacg ctatcaagaa ctacaagcta aacttaaaac tgctaaaggc
      781 gaagagcaga aacgcttatt caatgaatta acaaacttag ttgaaggtac ggcaattgga
      841 gaaattattt ctgatcgcca agcattaatg gctctattag ggataaagaa taatgttcaa
      901 ttaggtgaaa aagtacagaa agatattcag aatagtgaag gagctgttga aacctctcac
      961 gctgttattc gggatactaa tgctcataaa gttgaatcat taaaaaatac aactgaattt
     1021 gcacaaatga aaaactttga aaaagtaaat ggagtgttag gcacattagc tgaattactg
     1081 aataaatacg ccaatgaata ccctaactta actcaatttt taagtggtgc aacagatgcc
     1141 gttaaaattt ttggagcagc tcttgctgca tcaagtgtgc ttgatttatt aaccggtaaa
     1201 aaagacaagg gcggactaat tggtgatgtt ttggataaat catcaaaagc tagtggaggt
     1261 aaaggtaagg taggtaaatt gctttcggtt ggtggctctt ttgctagtgt tgcaggcgtt
     1321 gccacaatgc tacacggcga ccaagccccg atgagtgagg agcgaaaagc agagttaaga
     1381 gatcctaatt atcaagctcg taaaatgtac gagtacaaaa aagagatttt aggtagccgt
     1441 ttccactcgt tttttcgtag taatgaaacc cttgagcaat atcggaaaga tgtgagtgct
     1501 tatgaggcta agcaaaagaa tagcaatact atgggagctg tacaaggggt tttaagtacc
     1561 attccgagct tacaagagtt acgccctaaa gttgattcgg ttactcaaac cctatccacc
     1621 tatcaagccg actttcaggc ttttggggca acgatttcag ccggtattga ggcagggctt
     1681 gcctcgcaat ctcatacgat tgcaaatcaa atcaccgtgg agctggacgg ttcggtggtg
     1741 gctgaaaaag tggctgaata tcagtttaat tttaacaaga ggatggcgta atgagcggtt
     1801 ggacaatgcc tattcaacag gcgagtttta aaggtgtgcg ttttgacgtg cttgcagtgg
     1861 atgatagctt tgagcgagcg gtagttgaac acgcctaccc ttttgtaaat ggggctgatt
     1921 tagaggatat ggggctaaac acccaaacta ttcggctgca agcggtcttt tttggctcaa
     1981 gctattacac ggactatatc cgcttacttt cagttttgca gcaaaaaggg gctgatgtat
     2041 tagtccaccc tattcgtggg cgtttaccga atatgttact cgtttcggcg aatctacata
     2101 ccgatgccga aaatatcaat tatgttgcct tagatttgac ctttaaagag gcaaccgaaa
     2161 tgcagccgat ttttgccttt gaagattcgc tgatttcgaa aatcgacaag ctgctacttg
     2221 atctcgaaaa cctgtttgat gatggcttgc gtttttggga tagcgttggg gtgtttgatc
     2281 tgaaatctcg tttgcttggg ctttgggggg cgttgtttgc ctcgtttgag gcggtgcgta
     2341 acctgtttga cttggacaag aaaaaataca gcattgcctc atcaacctca caacgcacct
     2401 atttaagaga cggttcgggg gcattgaatc agttaaaaga aatggtggat agcggtattc
     2461 aggggcgtgc tgatttaacg acactctcgt ttaaatctca gttactcaat attactgatg
     2521 cgatagataa cactcaggcg attgtgagca aagtggctag agatgagggt tttaaccgct
     2581 caaaaacggt taagttactt ggctctgatg tggttgagct tggcattatg cttgacctta
     2641 ttgccacgac taagctcacc aaagtcttga ctgagctggt agaagagcgt gaggaagagc
     2701 tgctaattgg tgatttagag ttaattaacc aaattgtgcg tgagcattgg ctgaatatta
     2761 tcaacaaact gcgtgagcaa cagaagaaca ctcaaaaagg cgtgccgagt gataagacaa
     2821 aagttatcta cgagaccgca gaaaagctga tcaacaatat ccgtaatgtt gcccatcagt
     2881 ttactgcact tgtgcttgcg gtaattaata aaaaaccgcc tttgaccgtg cgaatggtaa
     2941 tggatagcgg cacaatccat aaagtagctc acgcctttta tggggattat gagcgagcgg
     3001 atgagctatt acgtcttaat ccgcatattc gccagccaaa ctttattgag cgaggcacgc
     3061 tgttaaattg ttattgggag taaaaatgga aaatgaaatt gtggtggaga ttgacggctc
     3121 gcagcataaa aactggaaaa gttatgatat tgacagcgat tttttaattc ctgctgatag
     3181 ttttaatttt gagttgggta aatctagcaa tatagaggtt ttacctaatt attcgggcaa
     3241 aacggcaata gttaaaatca atggcaaaac ggtgctcact ggcattgtgg ataccacaca
     3301 tcacaccatt agcaaaagcg ggcgtgggtt tagcctaaat ggacgtgata aagccgctat
     3361 tttggtggat tgctctgccc cgattaccaa tgtgcaaggg ctctctttgc ttgatgctgt
     3421 taaaaaaatt gtaacccctc ttgggattaa agaggtgcaa ctgaaagccg agaaaaaccc
     3481 gactttaagc aaggtggata ttgatgtggg tgaatcggcg tgggaggcga ttatgcggtg
     3541 tgccaactcg gcaggtttgc attgttggtt tgaccccaaa ggcgtgttaa ttgtcggcgg
     3601 tgcggattac gctcaaccgc ccgttgccac gttatattgc gtgaaagagt cgggggatag
     3661 ccgtaaaaat aactttgttg atgcaacact ttcttatgat gtgtcgcaaa gctattcgga
     3721 ggtcactttt cttgctcaaa aacacggcaa agattctgat aatgccaagc acgattttaa
     3781 atgggtgtat aaaaatgagg aaatggagct ttataaaccg aaaactatcg tgctgggcga
     3841 tgtggagaac ctcgaagcct tgatgaaaca ggcgaaaaaa caggtatcag attggcagtt
     3901 ggagtcattt aacctcacga ttattgtacc tgaccataaa accaaagacg gcacgttgtg
     3961 gcaagctggg caacgtgtgc acgtggtatg tgaggagtat gatttagatg gtattttctt
     4021 tttaatgggg cgacgttttc gactctctcg cacgggtggc acaaccaccg aattgcggtt
     4081 aaaactggat ggcgtgtgga cacctgatgc ttatcaagct aaagcacaag aggctcgcaa
     4141 gcgtaaaggc aaaaaaggac gtaagaaaaa agagcctgta gaatatgtag gctcgtggga
     4201 gttgggaaaa taatatgatg agaaaattag caaaacagac taaagaggtg gcaaaaggtg
     4261 tgcaagatag cgtgcgtgct gcttttagag gggtattaaa tttagtcaag agtggcagtg
     4321 atatgcagca ggtacaggtg tccgctttag cggacgaaac tatccaagat ttagagctaa
     4381 tgcagcattt tggtttcact tccgtgccac ctgccggcac gcaagcggtt gttatcccct
     4441 taggtggtaa aaccacgcac ggtattattg tggcgactga aaacggctcg tttagggtta
     4501 aaaatctaaa aaatggtgag acggctattt atgattcaag cggctcaact atcatattaa
     4561 aaaacgggcg agtgattgat attgagtgcg atagctttaa cattaaatgc aagcaatatt
     4621 ccgtcaccgc aagcggtgga gcaaatttta acaccccgaa actagaaacc gaccagcagt
     4681 ttgtgtctca agggcagatc agcggcaacg gtggaatggt agttcaaggc ggaagtggtg
     4741 caagtttcac tggctcatta acacaacaag gaggcagtat ctcaactgat ggtgatgtgg
     4801 tggcatcggg taaatcactg gttacacatc aacacaacga acaaggcgat ggcagaccta
     4861 cctctgctcc aatttaactt acaagctaat ttacaagcgg tctaattttg caaatttttt
     4921 gtagaaaaag accgcttgcc atttgtggaa gtctctcccc gttactcctg tctttaatgt
     4981 ctctaccata gcaatatgga cagagaaatc agcccgctca ctcgggacta tacaagtgaa
     5041 aatataacta cactgcaaaa tgccgtgtat atcagactaa ctactccgaa aggctcgtgg
     5101 tgggcagatg ggcgtgtagg ttctctgctc catcttattc aacgtgagaa agatttaagc
     5161 cgtgtggggc tattagctca acagtacgcc gaagaggctt tgcagccgat tattgatgac
     5221 ggacgagcca aaagcattac ggtgacacac gagcagccaa aagacggctc gttaaatctt
     5281 ttaatctccg ttattgataa tcgtggggtt aaatttgagt ttaaacaccc tgtaaaactg
     5341 gtttaggtgg tttttaaaat gtatcaaatc ccaacgcttg aagatgttag aagagaaatt
     5401 ctgcgagata ttcaatcttt agagccaact gctgatattg aggtggattc ggattatttt
     5461 gttcgtgcct ccgctttggc aagctgtgtg gtggggctgt atgctcacca aaactggatt
     5521 gttcgtcagt atttcccaga tacggcagac tccgaatacc tcgaaatgca cgctaaattg
     5581 cgaaatcttt accgtaaaaa tgcgacctat gcgagtggtt cgttgaaagt ttttggtact
     5641 gctggctcag taatcaatga gggcttgcaa gttaaatttg gcgagcgttt ttatgtaacc
     5701 aaaagctcgg acgttattgg tgatgatggc tctgcaacgg tgcgagtgat ttcaatggca
     5761 acaggggcat caagcaatgt taaatctgaa agtaaagcac aactgactgc tgctcctgct
     5821 ggcgtatcaa gcgattgctt gttattgcct gatgtgacag gcgggacgga agtggaaagc
     5881 gatgcggcat tgctggctcg gttattagag cagattcgcc gaccaccgtc aggcgggaat
     5941 aaaaatgact tccgccaatg ggcagaaagc gttgatggcg taacctctgc gtttgtttat
     6001 ccattacggc gtggcgaggg tacggtagat attgcaatca cctcaggtga taccgtgcca
     6061 agtgatgaaa tcgtgcgagc aactcaagct tatattgatg aagtccgccc tgttacggct
     6121 aaatcggttt atgtacttaa gccagttgaa aaacgggtca attttaacat caaagtgcaa
     6181 cttgatacgg atacgacgct tgatggtgta aaagcggaaa tcgaaaacgc tttagagaat
     6241 tattttttat cactcaaacc tgctgacacc ttaattattt cgcaaattga ggcagtaatt
     6301 agtgatttag tgggcgtagt agatcgtgag attgtacagc caaccagaaa ccaaacgatt
     6361 gatgcctacc gtgaaatggg ctggttcaga ttgggtgatg taactgtgga gttgatgtga
     6421 tggtaacgat taactct
//
LOCUS       DANLZD010000136         6430 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.136, whole genome shotgun sequence.
ACCESSION   DANLZD010000136 DANLZD010000000
VERSION     DANLZD010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6430)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6430)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6430
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.136"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            3..2660
                     /gene="aceE"
                     /locus_tag="PXE26_002125"
     CDS             3..2660
                     /gene="aceE"
                     /locus_tag="PXE26_002125"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005628834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HDL5594673.1"
                     /translation="MSENLRNDVDPIETQDWLASLDSLIREEGLERAQFIIEQVISQA
                     RAGGVALPTGVTTDYVNTIPVSEQPAYPGDHKIERRIRSAVRWNAIAAVLRSQKKDLD
                     LGGHISTFQSAATMYEVCFNHFFKAPTEKDGGDLVFFQGHAAPGMYGRAFLEGRITAE
                     QMDNFRQEAFTDGLSSYPHPKLMPEFWQFSTVSMGLGPVNAIYQARFLKYLENRGLKD
                     TSAQKVYAFLGDGEMDEIESKGALSFAGREKLNNLIFTISCNLQRLDGPVNGNGKIVQ
                     ELEALFTGCGWEVIKVLWGSGWDKLLEKDTSGKLKQLMMEVLDGDYLTFKSKNGAYVR
                     EHFFGRYPETAALVADMTDDEIWALRRGAHDSEKLYAAYAKAQKSDKPVVILAHQVKG
                     YRIPEAESKNTAHQSKKMSLDSLKGFRDYFELPLTDEQVESLEYVRFPEGSEEYNYLH
                     GQRKALNGYVPVRKPKFTVDFKVPELSEFQALLDEQPRGISTTMAFSRVLNTLLKDKN
                     IGQQIVPIIADEARTFGMEGLFRQIGIYNPHGQNYVPSDRDLVAYYREAKDGQVLQEG
                     INELGATASWVAAATSYSVSNLPMIPFFIYYSMFGFQRVGDMMWLAGDQLARGFMIGG
                     TSGRTTLNGEGLQHEDGHSHIQAGVIPNCVTYDPAFAFEVAVIVQDGIRRMYGENQED
                     IFYYITTLNEITEQPAMPAGAEEGIRKGLYKFETVEGKGKGHVQLLSSGAIMRHVRAA
                     AQILANDYGITADVFSAPSFNELGRDGADVARWNLLHPTETPRVPYVAQVLQDLPTVA
                     STDYMKMYAEQIRAYVPSKHYHVLGTDGFGRSDSRANLREHFEVDERYVVVAALAQLA
                     KEGTVENKVVAEAITKFGLNVDRINPLYA"
     gene            2864..4774
                     /gene="aceF"
                     /locus_tag="PXE26_002126"
     CDS             2864..4774
                     /gene="aceF"
                     /locus_tag="PXE26_002126"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex
                     dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HDL5594674.1"
                     /translation="MSKQINVPDIGSDEVSVTEVMVKVGDTISVDQSIINVEGDKASM
                     EVPAPEAGVVKEVLVKVGDKVSTGSPMLILESADAAPAQEAPKAEAAPAAPVATTSAV
                     VEVNVPDIGGDEVNVTEIMVKVGDSVEVDQSIINVEGDKASMEVPAPVAGVVKEILIN
                     VGDKVSTGKLIMKFETASAATAQSTPVAEAAPAQASASAIKDVNVPDIGGDEVNVTEI
                     MVKVGDSVSEEQSLITVEGDKASMEVPAPFAGVVKEILVKSGDKVSTGSLIMKFEVAG
                     AAPAPAAAQAASAPAPAPQAAAPAKADAAPAGQNQSGLSQEQVVASAGYAHATPVIRR
                     LAREFGVNLDKVKGTGRKGRIVKEDIQAYVKTAVQVFEKQGGTAAAATGAANGAGLGL
                     LPWPKVDFSKFGEVEEVELSRINKISGANLHRNWVMIPHVTHFDRTDITELENFRKEQ
                     NKEAEKRKLDVKITPVVFIMKAVASALEAFPRFNSSISEDAQRLTLKKYINIGVAVDT
                     PNGLVVPVFKNVNKKGIIELSRELMEVSKKAREGKLTASDMQGGCFTISSLGGIGTTH
                     FTPIVNAPEVAILGVSKSEMQPIWNGKEFEPRLMLPLSLSFDHRVIDGADGARFLSYI
                     NSVLADIRRLVM"
     gene            4974..6398
                     /gene="lpdA"
                     /locus_tag="PXE26_002127"
     CDS             4974..6398
                     /gene="lpdA"
                     /locus_tag="PXE26_002127"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011272714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HDL5594675.1"
                     /translation="MSKEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYSTLGGI
                     CLNVGCIPSKALLHVAKVIEEAKNAVHNGVTFGEPTIDLDQVRAGKEAVVSKLTGGLA
                     GMAKARKVTVVEGLAAFTGPNTLVARDRDGNPTTITFDNAIIAAGSRPIQLPFIPHED
                     PRVWDSTDALKLKEVPKKLLIMGGGIIGLEMGTVYNALGSEVEVVEMFDQVIPAADKD
                     VVAIYTKQIEKKFKLMLETKVTAVEAKDDGIYVSMEGKACNDTKRYDAVLVAIGRVPN
                     GKLIDAGKAGVEVDERGFIRVDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV
                     IAGMKHYFDPKVIPSIAYTEPEVAWVGKTEKECKQEGLNYEVAKFPWAASGRAIASEC
                     SEGMTKLIFDKDTHRVLGGAIVGSNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE
                     SVGLAAEVFEGSITDLPNAKAKKR"
BASE COUNT         1956 a         1222 c         1501 g         1751 t
ORIGIN      
        1 ctatgtcaga gaacttaaga aatgacgtag atccaatcga aactcaggat tggttagcat
       61 cactcgattc attaattcgt gaagaaggtt tagagcgcgc tcaatttatc attgaacaag
      121 ttattagcca agctcgtgca ggtggcgtgg cattaccaac aggcgtaaca acagattatg
      181 tcaatactat ccctgtttcc gagcagccag cttatccggg tgatcataaa atcgaacgtc
      241 gtattcgttc tgcggtacgt tggaatgcga ttgcggcagt acttcgtagc cagaagaaag
      301 atcttgactt aggtggtcat atttcaactt tccaatctgc ggcaactatg tatgaagtgt
      361 gttttaacca ctttttcaaa gcaccaaccg aaaaagatgg tggtgattta gtgttcttcc
      421 aaggccacgc agcaccgggt atgtatggtc gtgcgttctt agaaggtcgt attaccgcag
      481 aacaaatgga taacttccgt caagaagcat ttacagacgg tttatcttct tacccacacc
      541 ctaaattaat gcctgaattt tggcaattct ctaccgtatc tatgggttta ggaccggtaa
      601 atgctattta ccaagctcgt ttcttaaaat atttagaaaa ccgtggtcta aaagatactt
      661 cggctcaaaa agtatatgca ttcttaggcg atggcgaaat ggatgaaatc gaatctaaag
      721 gtgcattatc attcgccggt cgtgaaaaat taaataactt aatcttcact attagctgta
      781 acttacaacg tttagacggt ccggttaacg gtaacggcaa aatcgtgcaa gaattagaag
      841 cactctttac cggttgtggc tgggaagtga ttaaagtgtt atggggtagt ggttgggata
      901 aactgcttga aaaagatact tcaggcaaac ttaaacagtt aatgatggaa gtgcttgatg
      961 gtgactattt aaccttcaaa tccaaaaatg gtgcttacgt tcgtgaacac ttcttcggtc
     1021 gttaccctga aactgcagca ttagttgctg atatgacaga cgatgaaatt tgggcattac
     1081 gccgtggtgc acacgattct gaaaaacttt atgcagccta tgcaaaagca caaaaatcgg
     1141 acaaaccagt tgtaatttta gctcaccaag tgaaaggcta ccgtattcct gaagcggaaa
     1201 gtaaaaatac tgctcaccaa tcgaaaaaaa tgtcattaga cagcttaaaa ggcttccgtg
     1261 actacttcga gctaccatta accgatgagc aagtagaaag cctagagtat gtaagattcc
     1321 ctgaaggttc tgaagagtac aactacttac acggacaacg taaagcctta aacggttatg
     1381 tgcctgtacg taaaccgaaa tttacggttg atttcaaagt gcctgaatta agcgaattcc
     1441 aagcattatt ggatgagcaa ccacgtggta tttcaaccac aatggcgttc tctcgtgtat
     1501 tgaatacttt attgaaagat aaaaatatcg gtcagcaaat cgtacctatt attgcggacg
     1561 aagcccgtac tttcggtatg gaaggtttat tccgtcaaat cggtatttat aacccacatg
     1621 gtcaaaacta tgtaccgtca gaccgtgatt tagtagctta ctaccgtgaa gcaaaagatg
     1681 gccaagtgtt acaagaaggt atcaatgagt taggtgcaac agcctcttgg gtggcagcag
     1741 cgacttctta ttctgttagc aacttaccga tgatcccatt cttcatctac tactcaatgt
     1801 ttggtttcca acgtgtaggc gatatgatgt ggttagccgg tgaccaatta gctcgtggct
     1861 ttatgattgg tggtacttca ggtcgtacaa cattaaacgg tgaaggttta caacacgaag
     1921 atggtcatag ccatattcaa gcaggtgtaa tcccgaactg cgtcacttat gaccctgcat
     1981 ttgcctttga ggttgcggtt attgttcaag acggtattcg tcgtatgtat ggtgaaaacc
     2041 aagaagatat cttctactac attactacct taaatgaaat taccgaacag ccggcaatgc
     2101 cggcaggtgc ggaagaaggt atccgtaaag gtttatataa atttgaaacc gttgagggta
     2161 aaggtaaagg tcacgtacaa ttattaagct caggtgcaat tatgcgtcac gtgcgtgcag
     2221 ctgcacaaat tctcgcgaat gactacggca ttacagcaga tgtattctca gcaccatcat
     2281 tcaatgaatt aggtcgtgat ggagcagatg tggctcgttg gaacttatta cacccaactg
     2341 aaacaccacg tgtaccgtac gttgctcaag tgttacaaga tttaccgact gttgcttcaa
     2401 ccgactatat gaaaatgtac gcagagcaaa tccgtgctta tgtaccaagt aaacactatc
     2461 acgtgttagg tacagacggt ttcggtcgtt cagacagccg tgcaaactta cgtgaacact
     2521 tcgaagttga tgagcgttat gtagtagttg cagccctcgc tcaattagcg aaagaaggta
     2581 cagttgaaaa caaagtggtt gcggaagcta ttactaaatt cggcttaaat gtagatcgta
     2641 ttaacccatt atatgcgtaa tttctaatac tctctccctt gatgggagag agacagctaa
     2701 aggtttcgtt tagaaacttt tagcagagag ggtattagtt ttatttgcaa aaatgttgag
     2761 aaaatcaacc gcttgcattc ccttctccct gatttttctt cttacaaaga aaaatctgtc
     2821 cctcccacaa tgggagaggg ggtaactcaa gaaggatttc aaaatgtcaa aacaaattaa
     2881 tgtgccggac atcggttcgg atgaagtcag tgtgactgaa gtgatggtaa aagttggtga
     2941 tactatttca gtagatcaat caattattaa cgtagaaggc gataaagcct ctatggaagt
     3001 gccggctcct gaagcaggtg tggtaaaaga agttttagtg aaagtgggtg ataaagtttc
     3061 aaccggttca ccaatgttaa ttttagagtc agcagatgct gctcctgctc aagaagcacc
     3121 aaaagcagaa gcagctcctg ctgctccagt agcaacaact tcagccgttg ttgaagtaaa
     3181 tgtacctgat atcggtggcg atgaagttaa cgtaaccgaa attatggtta aagtaggtga
     3241 tagcgttgaa gtggatcaat ctatcatcaa cgttgaaggt gataaagcct caatggaagt
     3301 gcctgcaccg gttgccggcg tagtaaaaga aatcttaatc aatgtgggtg acaaagtttc
     3361 aactggtaaa ttgattatga aatttgaaac ggcttccgca gctacagcac aatctacacc
     3421 ggttgcggaa gctgctccag ctcaagcttc ggcatcagcg attaaagatg taaatgtacc
     3481 ggacatcggt ggtgatgaag taaacgtaac tgaaattatg gttaaagtgg gtgattctgt
     3541 ttcagaagaa caatctttaa tcacggttga aggtgataaa gcttcaatgg aagttccggc
     3601 tccatttgcc ggtgtggtga aagaaatttt agtgaaatca ggtgataaag tttcaaccgg
     3661 ttcattaatt atgaaatttg aagtagcggg tgcggcaccg gctccggcgg ctgctcaagc
     3721 ggcttcagct cctgctcctg ctccacaagc agcagctccg gcgaaagctg acgcagctcc
     3781 ggcaggtcaa aaccaatcag gtttaagcca agaacaagtg gtggcttcag ctggctatgc
     3841 acacgcaaca ccggtaattc gccgtttagc tcgtgagttt ggtgtaaacc tagacaaagt
     3901 aaaaggtaca ggtcgtaaag gccgtatcgt taaagaagat attcaagcat acgttaaaac
     3961 ggctgttcaa gtatttgaaa aacaaggcgg aacagcagcg gcagcaacag gtgcggcaaa
     4021 cggtgcaggc ttaggtttat taccgtggcc gaaagtagat ttcagcaagt ttggtgaagt
     4081 tgaagaagtt gaattaagcc gtatcaataa gatttccggt gcgaacttac accgtaactg
     4141 ggtaatgatt cctcacgtta cacatttcga tcgcacagac attaccgagt tagaaaactt
     4201 ccgtaaagag caaaataaag aagcggaaaa acgtaaatta gacgtgaaaa ttacccctgt
     4261 ggtcttcatt atgaaagcag tggcaagtgc attagaagcc ttccctcgtt tcaacagctc
     4321 aatttctgaa gatgcacaac gtttaacctt gaaaaaatac atcaatatcg gggttgcggt
     4381 tgatacgcca aacggtttag tggtgccggt gttcaaaaat gtgaacaaaa aaggcattat
     4441 cgaactttct cgcgaattaa tggaagtctc gaaaaaagcc cgtgaaggta aattgacagc
     4501 atctgatatg caaggtggct gtttcacaat ttcaagttta ggcggtattg gtacaacgca
     4561 ctttacgcca atcgtgaatg caccggaagt ggctatttta ggtgtgtcta aatctgaaat
     4621 gcaaccgatt tggaatggca aagagtttga accacgctta atgcttccgc tttcattatc
     4681 attcgaccac cgtgtgatcg atggtgctga tggtgcgaga ttcttaagct atattaatag
     4741 cgtgttggca gatattcgtc gtttagtgat gtaattcggt aaagctcctc ctaaaaaagt
     4801 ccctctttag aaaagagggg tagggggaga tttgatagac gtaatttacg aagagaataa
     4861 attatttggt agaaatttgt gtttgattga ttgctctctc acttcgcttt atattctgcc
     4921 aaatctccct tacccctctt tgctaaaggg ggggaataaa aagaggaaaa actatgagca
     4981 aagaaattaa aacccaagtt gtcgtacttg gtgcaggtcc agcaggttac tcagcggcat
     5041 tccgttgtgc cgacttaggc ttagaaacag taattgttga gcgttattca accttaggtg
     5101 gtatttgctt aaacgtaggt tgtatccctt ctaaagcatt attacacgtt gcaaaagtaa
     5161 ttgaagaagc taaaaatgca gtacacaacg gtgtgacctt tggtgagcca acgattgatt
     5221 tagatcaggt acgtgctggt aaagaagccg ttgtttcaaa attaaccggt ggcttagcag
     5281 gaatggctaa ggctcgtaaa gtgacagtag tagaaggctt ggctgcattt actggtccga
     5341 atacgttagt cgctcgtgat cgtgacggca atcctacaac tatcacgttc gataatgcga
     5401 ttatcgcagc aggttctcgt ccgattcaac taccatttat tccacacgaa gacccacgag
     5461 tttgggattc aaccgatgct cttaaattaa aagaagtacc gaaaaaactc cttattatgg
     5521 gtggtggtat tatcggttta gaaatgggaa cggtatataa cgcgcttggt tcagaagtgg
     5581 aagtggttga aatgttcgac caagtaattc ctgctgcaga taaagatgtt gtagcgattt
     5641 acaccaaaca aatcgagaaa aaattcaagc taatgcttga aaccaaagta accgcagtag
     5701 aagctaaaga tgacggtatc tatgtatcaa tggaaggtaa ggcttgcaac gatactaaac
     5761 gttatgatgc ggtattagtc gctatcggac gtgtgccaaa cggtaaatta attgatgccg
     5821 gtaaagctgg agtggaagta gatgagcgtg gctttattcg tgtagataaa caaatgcgta
     5881 ccaatgtgcc acacatcttt gctattggtg atattgtcgg ccagccgatg ttagctcaca
     5941 aaggtgtaca cgagggacac gtggcagcag aagtgattgc aggaatgaaa cattacttcg
     6001 atccgaaagt cattccgtcc atcgcttata ctgaaccaga agtggcttgg gttggtaaaa
     6061 ctgagaaaga gtgtaaacaa gaaggcttga actacgaagt ggcgaaattc ccttgggctg
     6121 cttcaggtcg tgcgattgct tctgaatgct cagaaggtat gaccaagtta atttttgata
     6181 aagatactca ccgtgtatta ggtggtgcga ttgttggtag caatggtggc gaattattag
     6241 gcgaaatcgg tcttgcaatc gaaatgggct gtgatgctga agatatcgca ttaaccattc
     6301 atgctcaccc aacgttacac gaatcggtag gattagcggc agaagtattt gaaggttcaa
     6361 ttacagactt accaaatgcg aaagccaaaa agcgttaatc agattattta atctctaaaa
     6421 aataagcggt
//
LOCUS       DANLZD010000137         6299 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.137, whole genome shotgun sequence.
ACCESSION   DANLZD010000137 DANLZD010000000
VERSION     DANLZD010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6299)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6299)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6299
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.137"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            90..1124
                     /gene="mltG"
                     /locus_tag="PXE26_002128"
     CDS             90..1124
                     /gene="mltG"
                     /locus_tag="PXE26_002128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HDL5594676.1"
                     /translation="MLKKILIALGLAGVIACGGLFYGYQKLTSLAEHPITVQPNQLFV
                     LEKGVSSQKLAALLEEQGIVTHDDADLIPYLMRLYPELSKFKAGAYSLAGLTTVKDLL
                     AHLSSGKEVQLNVQFIEGKTFKIWREQLAKADYLQHTLQGKSEKEIADLLGIPHEKIE
                     GWIAPDTYNYTPNSTDLALLKRAYQKQKTALEQAWKNRAENLPLATPYEMLILASIVE
                     KETGIATERPQVASVFINRLRNNMRLQTDPTVIYGMGDRYNGNIRRKDLEEATPYNTY
                     QIDGLPPTPIAMPSEASIKAVANPDNTPYLYFVADGTGGHKFSKTLNEHNKAVAEWIQ
                     IERKRKNEQK"
     gene            1135..1755
                     /locus_tag="PXE26_002129"
     CDS             1135..1755
                     /locus_tag="PXE26_002129"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HDL5594677.1"
                     /translation="MRGKFIVIEGLEGAGKTTAHQVILKELEQAGINDVVMTREPGGT
                     PLAEKLRHLIKHETEEAINDKAELLMLYAARVQLVENVIKPALAEGKWVLGDRHDMSS
                     QAYQGGGRKLDRHLLETLKESVLGTFEPDLTIYLDLDPVIGLERARGRGELDRIEQQS
                     LDFFYRTRERYLELTQHNDKAVIINAEQPIEQVTADIQQVIRNWLK"
     gene            1755..2732
                     /locus_tag="PXE26_002130"
     CDS             1755..2732
                     /locus_tag="PXE26_002130"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HDL5594678.1"
                     /translation="MYPWLESTYQQLTDSFLQGRGHHALLFKTDVGLGTDTLIYKVAE
                     WLLCSQKLRHQPCLECKSCLLMQSNNHPDFHILEPIEDKDIGIDQVRELIYKLQNFAQ
                     QGGNTVVYIRGVDRLTEASSNALLKTLEEPRENVYFLLEAPLQATVLATIQSRSQTWV
                     LYAPQASEVMAWLQTQFPAISTDDLEIALRLCHSRPLICKNFIENDRLQQRKTFLQTF
                     WRFYKSHDVFLLFQAFAQEKELILQQLEWLESFFSDALKAKMAISHGWLNPDLQNGIL
                     PFSQQLTTHGLLKGHQILQQTQRDLTEINAVNPELMLLDCLTKLVLVFE"
     gene            2863..3105
                     /locus_tag="PXE26_002131"
     CDS             2863..3105
                     /locus_tag="PXE26_002131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HDL5594679.1"
                     /translation="MARTTSVTLGEPLNDFVNEMVASGRYGSTSEVVRTALRMLEEKE
                     QYLAQLRQAIDDGDASGYATETIDEMMLRVKAELNV"
     gene            3098..3382
                     /locus_tag="PXE26_002132"
     CDS             3098..3382
                     /locus_tag="PXE26_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5594680.1"
                     /translation="MYKLSAQALRDQEKLFRYSISQFGVQQTESYFADLKHILNLLAD
                     FPTMGTSAEYIRGGLRMHTHQSHTIYYRIKADHIFIVRILHNQMNHKRYI"
     gene            3387..4175
                     /locus_tag="PXE26_002133"
     CDS             3387..4175
                     /locus_tag="PXE26_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchF/TatD family DNA exonuclease"
                     /protein_id="HDL5594681.1"
                     /translation="MKDLFIIDSHCHLDSLDYETRHKNVDEVIENAKARGVHHFISVC
                     TTVGRFEAMKNLTAHRNDVSLSCGVHPLNVEDEPFDYDKLFQFAQDPKVVAIGETGLD
                     YHYTPETKALQQSLFVQQIEIANKLNKPLIIHSRSARQDTMDMLEQNNAEKCGGVLHC
                     FTEDWAMAKRALDIGFYISISGIITFRNAEELREVVRKVPLDRLLVETDSPYLAPIPY
                     RGKPNQPAYVRETCEYVATLKGVSTEELARITTENVQHLFNIKL"
     gene            4185..4706
                     /locus_tag="PXE26_002134"
     CDS             4185..4706
                     /locus_tag="PXE26_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1523 family protein"
                     /protein_id="HDL5594682.1"
                     /translation="MRAILKYFLILVSLSFFIVLGGAVNYAMPSYEDTVVTGMEVRRM
                     DKDGIISKANPADGEVRDVYFLFTEDPETKKVMVYRNEDTGWGLPPYFKFGSADIQAK
                     AQAYANEKQRVQIKYYGWRINWLNEFRNIVSIKPLEEAETVSKPIMSYVLYAVLAFLF
                     FLSVQFIRGIFKD"
     gene            4781..5482
                     /gene="lpxH"
                     /locus_tag="PXE26_002135"
     CDS             4781..5482
                     /gene="lpxH"
                     /locus_tag="PXE26_002135"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HDL5594683.1"
                     /translation="MTYYFIADLHLNENQPEITHLFLQFMQEKALLAEAVYILGDLFD
                     FWIGDDEQSELISTVKQAIKTLTTSGTKCYFICGNRDFLIGKRFSEQTGMVILPDYHV
                     IDLFGTSTLLCHGDTLCTDDVKYQQFRKKVHQKWRQAIFLMFPLSWRIRIAEKIRSKS
                     KQEKRDKSAEIMDVNAEVTAQIVAKYNTTQLIHGHTHRQAIHQHNGFTRIVLGDWKEN
                     YASILSVTEQGAEFI"
     gene            5479..6269
                     /locus_tag="PXE26_002136"
                     /pseudo
     CDS             5479..6269
                     /locus_tag="PXE26_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618283.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
BASE COUNT         1987 a         1326 c         1273 g         1713 t
ORIGIN      
        1 actcaaatcc catttgcaaa tttttctgaa aaaacaaccg ctttatagta gaattcagtc
       61 aatttttatc acttttattt tattcatcaa tgctaaaaaa aatccttatt gcattaggct
      121 tagccggcgt tattgcttgc ggtggactgt tttacggcta ccaaaaactc acctctttag
      181 ccgaacaccc gatcacggtt cagccgaatc aacttttcgt attggaaaaa ggcgtttcca
      241 gccaaaaatt agcggctctg ttagaagagc aaggcattgt cacccacgat gacgccgatc
      301 ttatccctta tttaatgcga ttataccctg agttaagcaa attcaaggct ggtgcttatt
      361 cactcgcagg cttaacgaca gtaaaagatt tgctcgctca tttaagctcc ggcaaagaag
      421 tgcaacttaa cgtgcaattt attgagggca aaacttttaa aatttggcgg gaacaactag
      481 cgaaagccga ttatttacag cacacgctac aaggcaaatc ggaaaaagaa atcgctgact
      541 tactcggcat tccacacgaa aaaatcgaag gttggatagc cccggatact tacaactaca
      601 cgcccaattc caccgattta gccttgctta aacgggctta tcaaaagcag aaaacggcgt
      661 tggaacaggc ttggaaaaat agagcggaaa atctaccgct tgcaacacca tacgaaatgc
      721 tgattcttgc ctcgattgtg gaaaaagaga ccggcattgc gaccgaacgc ccacaagtgg
      781 catcggtctt tattaaccgt ttacgcaaca atatgcgact gcaaaccgat ccaaccgtca
      841 tttacggaat gggcgatcgt tataacggca atatccgccg caaagattta gaagaggcaa
      901 cgccatacaa tacttaccag attgacggct taccgccaac gccgattgcc atgccgagtg
      961 aagcttcgat taaagcggtt gccaacccgg ataatacacc ctacctctat tttgtggcag
     1021 acggcacggg cggtcataaa ttcagcaaaa cactgaatga gcataataaa gcggtggcag
     1081 aatggattca aattgaacgc aaacgcaaaa atgaacaaaa atagtgagaa caatatgcgt
     1141 ggaaaattta ttgtaattga aggcttagag ggcgcaggca aaacgactgc tcaccaagtg
     1201 attctcaaag agttggaaca agccggcatt aatgacgtag taatgacccg agaacccggc
     1261 ggcacccccc ttgccgaaaa gttacgccat ttaattaaac acgaaaccga agaagccatt
     1321 aacgataagg ctgagctgct aatgctctac gctgctcgtg ttcaattagt cgaaaatgtg
     1381 atcaaacctg cccttgccga aggcaaatgg gttctgggcg accgccacga tatgtcttcc
     1441 caagcctatc aaggcggtgg acgtaagttg gatcgtcact tactcgaaac cttaaaagaa
     1501 tcggtactcg gcacattcga gccagattta acgatttatc tcgatctcga tccggtgatt
     1561 ggtttagaaa gagccagagg cagaggcgaa ttagaccgca tcgaacagca aagccttgac
     1621 ttcttctacc gcacacgaga gcgttattta gaattaaccc aacacaacga taaagccgtg
     1681 atcatcaatg ccgaacaacc catcgaacag gtgactgcgg atattcaaca agtaattaga
     1741 aactggctga aataatgtac ccttggctcg aaagcactta tcaacaactt accgattcat
     1801 ttttacaggg tcgaggtcat cacgccttac tgttcaaaac agatgttggt cttggtacag
     1861 acaccttaat ctacaaggtg gctgaatggt tgctttgcag ccaaaaactc cgccatcaac
     1921 cttgtcttga atgcaaaagt tgcctgctta tgcaaagcaa caaccacccc gatttccaca
     1981 ttcttgagcc gattgaagac aaagatattg gtatcgacca agtgcgtgag ttgatttata
     2041 aactccagaa tttcgcccaa caagggggaa atacggtcgt ttatattcga ggagttgatc
     2101 gtttaaccga ggcaagcagt aatgccctgc tcaaaacctt ggaagagcca cgtgaaaacg
     2161 tctatttctt gctcgaagca ccgcttcaag caacagtttt agctaccatt caaagccgca
     2221 gccaaacttg ggtactttac gccccacaag cctcagaagt aatggcttgg ctacaaacac
     2281 aatttccggc aatctcaacc gacgacttag agattgcact ccgcctttgc cactcacgcc
     2341 cactaatttg caaaaatttt atcgaaaatg accgcttgca acagcgaaaa acctttttgc
     2401 aaaccttctg gcgtttctac aaaagccacg atgtcttctt gttattccaa gccttcgccc
     2461 aagaaaaaga gctgatttta cagcaactcg aatggctgga aagtttcttt agcgatgccc
     2521 taaaagctaa aatggcaatc agccacggtt ggctaaaccc ggatctccaa aacggcattc
     2581 tcccttttag ccaacaacta acgacccacg gcttacttaa agggcatcaa attctccaac
     2641 aaacccagcg ggatttaacc gaaattaacg ccgtcaatcc ggaattgatg ttgctagatt
     2701 gcctgacgaa gttggttttg gtgtttgagt aaaagccctc tctcatagaa ggtagctttc
     2761 aattagccgt aaaaagaggc ttctagccct agaatatagt ttataacttg caaaattatc
     2821 tatctttgtt attgtatgaa taattcacac aaggagaata ttatggcaag aacaaccagc
     2881 gtgactttag gcgaaccttt aaatgatttt gtaaatgaaa tggtggcaag tgggcgttat
     2941 ggctctacca gtgaagtagt gagaaccgct ttacgaatgc ttgaggaaaa agagcaatac
     3001 ttagctcagt tgcgacaagc cattgatgat ggtgatgcta gtggttatgc aaccgaaacg
     3061 attgatgaaa tgatgttgag agtaaaggcg gaacttaatg tataaacttt ctgctcaagc
     3121 actccgagat caagagaaac tttttcgtta cagtatctct caatttggtg ttcaacaaac
     3181 agaatcttat tttgcagatc taaagcatat tttgaattta ttagctgatt ttccaacaat
     3241 gggaacttct gcggaatata ttcgtggtgg cttgcgaatg cacacacatc aatctcatac
     3301 aatttattat cgaataaaag cagatcatat atttattgtt cgcatcttac ataaccaaat
     3361 gaatcataaa cgctatattt agaaaaatga aagacttatt tatcatagac tcacattgtc
     3421 atctagattc tctagactac gaaactcgtc acaaaaacgt ggacgaagta attgaaaatg
     3481 ccaaagcccg aggggtgcat cattttatct cggtttgcac tacagttggg cgttttgaag
     3541 caatgaaaaa cttaaccgcc catcgtaatg acgtttcact ttcttgtggc gttcacccgt
     3601 tgaatgtgga agatgaacct tttgattacg ataaattatt tcagttcgct caagatccga
     3661 aagtggttgc cattggggaa actggtttgg attatcacta cacaccggaa accaaagcgt
     3721 tgcaacaatc gcttttcgtt caacaaattg aaattgcaaa caaactcaat aagccactca
     3781 ttatccattc tcgttcggca cgccaagata cgatggatat gttggaacaa aataatgccg
     3841 aaaaatgcgg tggggtgttg cattgcttta ccgaagattg ggcaatggca aaacgggctt
     3901 tagacatcgg cttttatatc tcaatttcgg gcattattac tttccgcaat gcagaagaac
     3961 tccgagaagt cgtgcgaaaa gtgccgttag atcgcttatt ggttgaaaca gattcccctt
     4021 atcttgcccc gattccttat cgtggtaagc cgaaccagcc ggcgtatgtg cgggaaactt
     4081 gcgaatatgt ggcgacatta aaaggcgttt caactgaaga attagctcgc attacaaccg
     4141 aaaatgtgca acacttattc aacattaaat tataaggaac taatatgaga gcaatactta
     4201 agtattttct gattcttgtc tcactatcat tttttattgt attaggcggt gcagttaatt
     4261 atgcaatgcc aagttatgaa gataccgtag taacaggtat ggaagtacgc cgaatggata
     4321 aagatggtat tatcagcaaa gcgaatcctg ctgatggcga ggtgcgcgat gtttatttct
     4381 tattcacgga agatcctgaa accaaaaagg taatggttta tcgtaatgaa gataccggct
     4441 gggggttgcc tccttatttc aaattcggat ctgccgacat tcaagccaaa gctcaagcct
     4501 acgctaacga aaaacaacgt gtgcaaatta aatattacgg ctggcgaatc aattggctaa
     4561 atgaatttag aaatattgtt tcaatcaagc cattagaaga agcagaaaca gtcagcaaac
     4621 caattatgag ctatgtactt tatgccgtat tggcgttctt gttcttcctc tcagtacaat
     4681 ttattcgtgg catttttaaa gattaatgcc gattaacctt tgacaaacgg ttcgattttg
     4741 taaaaaattg aaccgttttc ttttttatca acaatatcaa atgacgtact attttattgc
     4801 cgatctccac ttaaatgaaa atcagcctga aattacccac ctctttttgc aatttatgca
     4861 agaaaaagca ctacttgcag aagcggttta tatcttaggt gatctgtttg atttctggat
     4921 tggcgatgat gagcagtctg aactcatttc aaccgttaaa caggcaatca aaaccctcac
     4981 tacaagcggt acaaaatgct attttatttg cggaaatcgt gattttttaa ttggcaaacg
     5041 attcagcgaa caaacgggta tggttatttt gcctgattat cacgttatag atttattcgg
     5101 cacatctacc ttgctttgcc acggcgatac gctttgtact gatgatgtga aatatcaaca
     5161 atttcgtaaa aaagtccacc aaaaatggcg acaagctatc tttttgatgt ttccgctttc
     5221 ttggcgaatt cgtattgcgg agaaaattcg atccaaaagc aaacaagaaa agcgtgataa
     5281 atccgctgaa attatggacg taaacgctga agttaccgct caaattgtcg caaaatacaa
     5341 tacaactcaa cttatacacg ggcatacgca tcgacaagca atccatcagc ataatggatt
     5401 tacccgcatt gtattaggcg actggaaaga aaattacgcc tctattttaa gcgtaaccga
     5461 gcaaggagct gaatttatat gattaatgtg attattcctt gctataacgc cgaaaacacc
     5521 cttgttcgtg cagtgcaaag tgtattaaat cagtctggat taaatctatt gtggcttatt
     5581 gatgatgctt caacggataa tacgcttgcc ttagctaaac atttacaagc ccaagtgcct
     5641 gataaaatta gagtggaaca aatgcctcaa aatggcggtg ttgccaaagc acgcaactgg
     5701 ggagcattac aaagtgaaac agatttaatt gcctttttag atgctgatga tgcttatgaa
     5761 aacggggcat tgcaagttgc tgaaaagatt tttgagttta aaccggaaac cggcttggtt
     5821 cggttagcat taaaaccggt aacttagatc aacgttacag ctctcaccct aattttgagt
     5881 tagcttggca atatatgcaa atgactggtg caggcaacac tgtatttcgg cgtagtttct
     5941 tcctcgcttg tggcggcttt ccacaacatc agctcttcca agaattaggt ggagaagatg
     6001 gtgctttagg catagccact acacaaatta gctctgtagc tactgcattt aatgatgtcg
     6061 gtgttttaca ttactgccga gagggtatgc acgcagaaag attattaaat gcgattttat
     6121 tcaacgaaaa agatcccaat gttactgaag aaaaagttaa acaagccaac ctaattaccg
     6181 aaaatattgt taataatatt agaaatctac aagactgtct taatagtaaa gggattggta
     6241 ttaagcctta tacgcttgaa tggagctaaa aaagcatttg cagattttcc ctaaaaaaa
//
LOCUS       DANLZD010000138         6162 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.138, whole genome shotgun sequence.
ACCESSION   DANLZD010000138 DANLZD010000000
VERSION     DANLZD010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6162
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.138"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..285)
                     /locus_tag="PXE26_002137"
     CDS             complement(<1..285)
                     /locus_tag="PXE26_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594684.1"
                     /translation="MSTTLNEINITELDAGPEIKSLSLNDAVNSFLNDSACPICGKNC
                     QYWQRLKRSLNRKENQGKGDKVLVKNPSPISIEKNLINAYKEYRKFEEDLK"
     gene            complement(319..1605)
                     /gene="purD"
                     /locus_tag="PXE26_002138"
     CDS             complement(319..1605)
                     /gene="purD"
                     /locus_tag="PXE26_002138"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HDL5594685.1"
                     /translation="MNILIIGNGGREHALAWKVRQSPLADKVFVAPGNAGTAMENGIE
                     NVAISATDVPALVTFAKQNSVGLTIVGPEAPLVVGVVDAFRAHGLTIFGPTQAAAQLE
                     GSKAFTKDFLARHQIPTAEYQNFTEIEPALAYLKQKGAPIVIKADGLAAGKGVIVAMT
                     LQEAEDAVRDMLSGNAFGEAGSRVVIEEFLDGEEASFIVMVDGKNVEPMATSQDHKRV
                     GEGDSGLNTGGMGAYSPAPVVTKAIHQRVMDEIIYPTVQGMASENTPYTGFLYAGLMI
                     MPNGQPKVIEFNCRFGDPETQPIMMRLESDLVELCLKACEGKLDSVQSKWCEQAALGI
                     VLAAAGYPGDYRKGDEIIGIPTSTSNQKVFLAGVEQKEGKLLTNGGRVLCATALGNSV
                     FEAQQQALQLAEQIQWQGKFYRRDIGYRAVARKQAK"
     gene            1839..2213
                     /gene="rpsF"
                     /locus_tag="PXE26_002139"
     CDS             1839..2213
                     /gene="rpsF"
                     /locus_tag="PXE26_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HDL5594686.1"
                     /translation="MRHYEIVFMVHPDQSEQVPAMIERYTASVKEAGGQVHRLEDWGR
                     RQLAYPINKLHKAHYVLMNVEAPQSVIDELETNFRYNDAVLRNLIVHTKAAVTEASPM
                     VKAKESKVAEAVAEVESEEAGE"
     gene            2188..2562
                     /gene="priB"
                     /locus_tag="PXE26_002140"
     CDS             2188..2562
                     /gene="priB"
                     /locus_tag="PXE26_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HDL5594687.1"
                     /translation="MNQRKQASNLPIDNCLILSGTVSSLVKQSLNPLGVPHYSFWLEH
                     RSIQTEVNLERQAWCKIQVVLAGNQFSYLTQQIKLGESVRIKGFIHTHKDFNGLNQLV
                     LHTEQIEFIDQEKPNGTLFPSS"
     gene            2537..2764
                     /gene="rpsR"
                     /locus_tag="PXE26_002141"
     CDS             2537..2764
                     /gene="rpsR"
                     /locus_tag="PXE26_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HDL5594688.1"
                     /translation="MARYFRRRKFCRFTAENVVEIDYKDIATLKNYISESGKIVPSRI
                     TGTRAKYQRQLARAIKRARYLALLPYTDNHQ"
     gene            2780..3229
                     /gene="rplI"
                     /locus_tag="PXE26_002142"
     CDS             2780..3229
                     /gene="rplI"
                     /locus_tag="PXE26_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HDL5594689.1"
                     /translation="MQVILLDKVAHLGSVGDQVTVKSGFARNFLIPQGKAVMATAANI
                     AHFEARRAELEAKAAAALATAQERAAKIAALAAVSVSATAGDDGRLFGSVSAKDIAEA
                     LTAAGVGVAKSEVRLGEGPLRTTGEHQVKIHLHPEVNATVAVNVVAE"
     gene            complement(3293..4069)
                     /gene="dnaQ"
                     /locus_tag="PXE26_002143"
     CDS             complement(3293..4069)
                     /gene="dnaQ"
                     /locus_tag="PXE26_002143"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HDL5594690.1"
                     /translation="MTEEKIIRQVVLDTETTGMNMAGGPPQIGHNIIEIGAVEVINRR
                     LTGRTYHVYIKPPREVDEEAIAVHGITNEFLQDKPVFAEIAEEFLDFIKGAELIIHNA
                     PFDVAFMDQEFSYLPNPPAKTAEMCTVTDSLQMARRMYPGKRNNLDALCDRLGIDNSK
                     RVLHGALLDAEILADVFLMMTGGQISLLGEEETEVVSEVIDIEEEFSAIVLNADEAII
                     LKANDEEEESHLALLKLIEKKSKGNCLWTKALTDTAEISH"
     gene            complement(4157..5827)
                     /gene="ettA"
                     /locus_tag="PXE26_002144"
     CDS             complement(4157..5827)
                     /gene="ettA"
                     /locus_tag="PXE26_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HDL5594691.1"
                     /translation="MSTQFVYTMHRVGKVVPPKRHILKDISLSFFPGAKIGVLGLNGA
                     GKSTLLRIMAGVDKEFEGEARPQPGIKIGYLPQEPKLAPQQTVREAVEEAVAEVKNAL
                     TQLDEVYAMYADENADFDKLAAKQAELEAIIQAHDGHNLQNQLERAADALRLPDWDAK
                     IEHLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDYEGTVVAITH
                     DRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKEKRLAQEQAAESARQKSIEKELEW
                     VRQNPKGRQAKSKARMARFEELNSGEYQKRNETNELFIPPGPRLGDKVIEVQNLTKSY
                     GDRTLIDDLSFAIPKGAIVGIIGANGAGKSTLFRMLSGKEQPDSGSIVLGETVVMASV
                     DQFRDAMDDKKTVWEEVSNGQDILTIGNFEIPSRAYVGRFNFKGVDQQKRVGELSGGE
                     RGRLHLAKLLQRGGNVLLLDEPTNDLDVETLRALENAILEFPGCAMVISHDRWFLDRI
                     ATHILDYGDEGKVTFYEGNFSDYEEWKKKTFGEAATQPHRVKYKRIAK"
BASE COUNT         1625 a         1414 c         1290 g         1833 t
ORIGIN      
        1 ctttaaatcc tcttcaaatt ttctgtattc tttataagcg ttaattaaat ttttctcaat
       61 agaaattgga gatggattct tcacaagaac tttatctccc ttaccttgat tttcttttct
      121 atttaaagat ctttttagtc tttgccaata ttgacagttt tttccacata tagggcacgc
      181 agagtcattt agaaaagagt ttactgcatc gtttaatgat agtgatttaa tttcggggcc
      241 tgcatcgagt tcagtgatat taatttcatt aagtgttgta ctcataataa atttttcctt
      301 gttttaagag tttataaatt atttcgcttg ttttcttgcc actgctcggt agccaatatc
      361 tcggcgatag aatttgcctt gccattgaat ttgttcggca agttgtaagg cttgttgttg
      421 agcttcaaat acactgttgc caagtgcggt ggcacaaagt acacgtccac cgttggtgag
      481 cagttttcct tctttttgct caacccctgc taagaaaact ttttgattgg aggtagaggt
      541 cggaatgcct atgatttcat cgcctttacg gtaatcgccc gggtagcctg cggcagctaa
      601 aacaatgcct aatgcggctt gttcacacca ttttgattgc acgctatcca atttgccttc
      661 gcacgctttt aagcacaatt caacgaggtc tgattccaaa cgcatcataa tcggctgagt
      721 ttcagggtct ccaaaacggc agttaaattc aatcactttc ggctgaccgt ttggcataat
      781 cattaagccg gcatagagaa aaccggtgta aggggtattt tcgcttgcca ttccttgcac
      841 ggtcgggtaa ataatttcgt ccattacacg ttggtggatt gcctttgtta ccaccggagc
      901 aggggagtaa gcccccattc cgccggtatt taagccgcta tcgccctcgc caacacgttt
      961 gtggtcttgt gaggttgcca ttggttcgac atttttgccg tccaccatca caataaaact
     1021 ggcctcttct ccgtctaaaa attcctcgat caccacacgg ctgccggctt caccaaaggc
     1081 gttgcctgac agcatatcac gcactgcatc ttccgcctct tgtaaagtca ttgcaacaat
     1141 tacgcctttg cctgcggcta aaccgtctgc tttgattaca atcggtgcac ctttttgttt
     1201 taagtaggca agtgccggtt caatttcggt gaaattttgg tattctgcgg ttggaatctg
     1261 atggcgagcc aagaaatctt tggtaaatgc tttagaacct tctaattgag cagcggcttg
     1321 ggtcgggccg aaaatggtta aaccgtgggc tcgaaaagca tcaaccacgc caactactaa
     1381 cggtgcttca gggccgacaa tcgtcaaacc tacgctattt tgtttagcga atgtaactaa
     1441 ggcaggcacg tcagtggcgg aaatagctac attttcaatg ccgttttcca tcgctgtgcc
     1501 ggcattgccg ggggcgacaa agactttgtc tgcgagcggc gattgacgaa ctttccaagc
     1561 aagagcgtgt tcacgcccac cgttgccgat aattaaaata ttcattggga ttccttgcaa
     1621 aaatgataaa gcaaacgttt gcgtattgta cttgatttgt ttatctgctg acaagcagtc
     1681 gtttttctcg gattttttgc aaaatacgaa attgttgctt gcaaaatagg cttttttcag
     1741 tataatcctg ccgttcagtc acattcgttt tttaatcctt gcttccacaa gttggtgact
     1801 ggctaaagtt ggaggctgct aacccgtaag gatagtcaat gcgtcactac gaaatcgttt
     1861 ttatggttca cccggaccaa agcgaacaag taccagcaat gattgagcgc tacacagcgt
     1921 ctgtaaaaga agctggcggt caagttcatc gcttagaaga ttggggtcgt cgtcaattag
     1981 catacccaat caacaaactt cacaaagcac actatgtgtt aatgaatgta gaagcacctc
     2041 aaagtgtaat cgacgagtta gaaactaact tccgttataa cgatgcagtt cttcgtaact
     2101 taatcgttca cactaaagcg gcagtaactg aagcgtcacc aatggtgaaa gcgaaagaaa
     2161 gcaaagttgc tgaagcggta gctgaagttg aatcagagga agcaggcgag taatttgccg
     2221 attgataatt gtttaatctt aagcggaacg gtttccagct tggttaaaca aagcctaaac
     2281 ccccttggtg tgcctcatta cagtttttgg ttagaacatc gttcaatcca aaccgaagtg
     2341 aatttagaac gccaagcgtg gtgcaaaatc caagtggttt tggcaggcaa tcaatttagt
     2401 tatttaaccc aacaaattaa gctcggtgag agcgtgagaa ttaaaggttt tatccatact
     2461 cacaaagact ttaacggttt aaatcagtta gtcttacaca ccgaacaaat tgaatttata
     2521 gatcaggaga agccaaatgg cacgttattt ccgtcgtcgt aagttctgcc gtttcacagc
     2581 ggaaaatgtt gttgaaatcg attacaaaga tatcgctaca ttaaagaact acatttctga
     2641 aagcggcaag attgttccta gccgtattac tggtactcgt gcgaagtatc aacgtcaatt
     2701 agctcgtgca attaaacgcg ctcgctacct tgcgttactt ccatatactg ataaccacca
     2761 ataatcagga gagagtacaa tgcaagttat tttattagac aaagttgctc acttaggttc
     2821 tgtgggcgac caagtaaccg ttaaatctgg ttttgctcgt aacttcttaa tcccacaagg
     2881 taaagcggtt atggcaactg cggcaaacat tgctcacttt gaagcacgtc gtgcagaatt
     2941 agaagcaaaa gctgcagcag cattagcaac tgcacaagaa cgtgcagcga aaattgcagc
     3001 attagcagca gtatcagtat ctgcaactgc aggtgatgat ggtcgtttat tcggttctgt
     3061 atcagctaaa gacatcgctg aagcattaac tgcagcaggt gttggagttg ctaaatctga
     3121 agttcgttta ggtgaaggtc cacttcgtac aaccggcgaa caccaagtta aaattcactt
     3181 acaccctgaa gtgaatgcaa ctgtagcagt aaacgttgtt gctgaataat cagtagaaat
     3241 agaaaaccca gcgaaagctg ggttttttgt ttgctttatt tattggttag aatcagtgag
     3301 atatttctgc tgtgtcggtt aatgcttttg tccataggca atttcctttg gattttttct
     3361 caatcagttt cagaagtgct aaatgcgact cttcctcttc atcgtttgct ttaagaataa
     3421 ttgcctcatc ggcatttaac acaattgcag aaaattcttc ttcaatatca ataacttcac
     3481 ttaccacttc agtttcttct tcgcctaata atgaaatctg accgccggtc atcattagga
     3541 atacatcagc taagatctcc gcatccagta acgccccgtg tagtacacgc ttgctattat
     3601 caatgccgag cctgtcgcaa agtgcatcta aattattccg tttgccgggg tacattcttc
     3661 gtgccatttg caggctatcg gttacggtac acatttctgc ggtttttgcc ggtggattag
     3721 gcagataaga aaattcttga tccataaacg ccacatcgaa gggggcattg tgaataatta
     3781 attccgcacc tttgatgaaa tccaaaaact cctcggcaat ttcagcaaaa acaggtttat
     3841 cttgcaaaaa ttcattggtg atgccgtgaa ctgcaatcgc ctcttcatct acctcacgcg
     3901 gtggcttgat ataaacgtga taagttctgc cggttaaacg gcggttaatg acttcaaccg
     3961 caccgatctc aataatatta tgcccaatct gtggcgggcc acctgccata ttcattcctg
     4021 tggtttcagt atccagcact acttggcgga taattttttc ttctgtcata ttcaatttaa
     4081 aattgtaggg gtgaaatatt tttatccctt aattctgcat ttgattaggg gcgaaacata
     4141 tttcgcccct acattgttac ttcgcaatcc gtttatattt cactcggtgc ggttgggtgg
     4201 cggcttcacc gaaggttttc ttcttccact cttcatagtc ggagaagtta ccctcgtaga
     4261 acgtcacttt gccttcatcg ccgtagtcta aaatatgggt ggcgatacgg tctaagaacc
     4321 agcggtcgtg cgaaattacc attgcacagc ccgggaactc taagatcgca ttttccaacg
     4381 cacgcagggt ttctacgtct aagtcgttgg tcggctcgtc cagtaacaac acgttaccgc
     4441 cacgttgtag tagcttcgcc aagtgtaaac gaccacgttc accgcctgaa agctcgccca
     4501 cacgtttttg ctgatctacg cctttgaagt tgaaacgccc cacataagca cggcttggga
     4561 tttcaaagtt accaatcgtg agaatatcct gcccgttcga cacctcttcc cacacggttt
     4621 tcttatcgtc catcgcatca cggaactgat cgaccgatgc cattaccacc gtttcaccaa
     4681 gcacgattga accagaatcc ggctgttctt taccagaaag catacggaac aaggttgatt
     4741 tacccgcacc atttgccccg ataatcccga caatcgcccc cttcggaata gcgaacgaca
     4801 agtcgtcaat caaagtgcga tcgccgtaag atttagtcag gttttgtacc tcgatcactt
     4861 tatcacctaa gcgtggaccc ggtggaataa agagttcgtt agtctcgtta cgtttttgat
     4921 attcgcctga gttaagctct tcaaagcgtg ccatacgagc cttacttttc gcttggcgac
     4981 cttttggatt ttggcgtacc cattccaact ctttctcaat cgatttttga cgagccgatt
     5041 ccgccgcttg ctcttgtgcc aagcgttttt ctttctgctc caaccaagaa gagtagttac
     5101 cttcccaagg aatgccttca ccacggtcaa gctctaagat ccagcccgca acgttgtcta
     5161 agaagtaacg gtcgtgggta attgccacta cggtgccttc gtagtcgtgg aggaaacgct
     5221 ccaaccacgc caccgattcc gcatctaagt ggttggtcgg ctcatctaac aataacatat
     5281 ccggtttttc cagcaacaga cggcaaagtg ccacacggcg gcgttcaccc cctgataaat
     5341 gctcgatttt tgcgtcccaa tccggcagac gtaacgcatc ggcagcacgc tctaactggt
     5401 tttgaaggtt atggccatcg tgggcttgaa taatcgcctc taattccgcc tgttttgccg
     5461 ctaatttgtc gaaatcggca ttctcatcag catacatcgc atagacttca tcaagctggg
     5521 ttaaggcgtt tttcacttcc gcaaccgctt cttccaccgc ttcacgcacg gtttgctgtg
     5581 gggcaagttt cggttcttgt ggaagatagc cgattttaat tcccggttgt ggacgagcct
     5641 cgccctcgaa ctctttatct acgcccgcca taatgcgtaa aagcgttgat ttacccgccc
     5701 cgtttaagcc gagcaccccg attttcgccc ccgggaaaaa gctcagggaa atatctttaa
     5761 gaatgtgacg cttcggcggc acgactttgc cgacacggtg catcgtatat acaaattgag
     5821 ttgacattgg ttgtattcct cacaaaaaaa ttcgccttat tttacttgaa tttacagcca
     5881 aaatataggg tggttttggc ttttggtaaa gtaacctttt ccaatagaga tgttatttga
     5941 ggctgcatag tactatgcat ttctcttacc ttgacaggta agagaaacaa atcctgaagg
     6001 aaaaaaattt taaggaagtt attctatgca atatgtatgt ccaaaaacac tcaaattatt
     6061 caacagcatt gttggttgtt ataagggaga agattaattc tctacctcat caaggcttga
     6121 ttttagattt aatatccatt tctaaagatg atttagatga ta
//
LOCUS       DANLZD010000139         6110 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.139, whole genome shotgun sequence.
ACCESSION   DANLZD010000139 DANLZD010000000
VERSION     DANLZD010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6110
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.139"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            124..1113
                     /gene="dusB"
                     /locus_tag="PXE26_002145"
     CDS             124..1113
                     /gene="dusB"
                     /locus_tag="PXE26_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HDL5594692.1"
                     /translation="MQIGQYAIKNRIFLAPMAGITDQPFRRLCSQLGAGLTFSEMMST
                     NPDVWHTEKSRLRLAHHDEIGLNAVQIAGSDPVEMAKAAKINVEYGADIIDINMGCPA
                     KKVNKNMAGSALLRNPKLVAQILDSVVNAVDVPVTLKIRTGWDQENRNCLQIAKIAEQ
                     AGIKALTIHGRTRSCLFNGEAEYESIKAVKEAISIPVIANGDIDSAEKAKFVLDYTKA
                     DAIMIGRASFGNPWIFKEINDFFETGLSSPLSIDKKYQLMFKHIEDLHQFYGEEKGYR
                     IARKHVGWYTEKLNPESNFKRTFNTLSSTKEQLYALEDFVKSIHLESQLRKVG"
     gene            1118..1414
                     /gene="fis"
                     /locus_tag="PXE26_002146"
     CDS             1118..1414
                     /gene="fis"
                     /locus_tag="PXE26_002146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator Fis"
                     /protein_id="HDL5594693.1"
                     /translation="MLEQQPTQNPLTVTMLNAQAQQVNKPLRDNVKAALKNYLSQLNG
                     EDPTELYELVLSEIEHPMLDMVMQYTRGNQTRAATMLGINRGTLRKKLKKYGMG"
     gene            complement(1519..4305)
                     /locus_tag="PXE26_002147"
     CDS             complement(1519..4305)
                     /locus_tag="PXE26_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoferrin/transferrin family TonB-dependent
                     receptor"
                     /protein_id="HDL5594694.1"
                     /translation="MKYHHFRYSPVALTVLFALSHSYGAATENKKIEENNDLAVLDEV
                     IVTESHYAHERQNEVTGLGKVVKNYHEMSKNQILGIRDLTRYDPGISVVEQGRGASSG
                     YAIRGVDKNRVSLLVDGLPQAQHYHTLGSDANGGAINEIEYENIRSIELSKGASSAEY
                     GSGALGGAIGFRTKDAQDIIKEGQHWGLDSKTSYASKNSHFLQSIAAAGEAGGFEALV
                     IATHRHGKETKIHSEANKLKHNIRRITGFENRYDLYPNSAQNAPGGSFFIVEDTCPTL
                     DCTPRARVKLNRDNFPVRTFPEYTPEERKQLEQIPYRTEQLSAQEYTGKDRIAPNPLD
                     YKSNSVFMKFGYHFNSSHYLGAILEDTKQRYDIRDMQTPAYYTKDDINLSLRNYVYEG
                     DNILDGLVFKPRIPYGLRYSHVKFFDERHHKRRLGFTYKYKPENNRWLDSIKLSADKQ
                     DIELYSRLHRLHCSDYPVVDKNCRPTLDKSWSMYRTERNNYQEKHRVIHLEFDKALNA
                     GQGVFKQTHKLNLGLGFDRFNSLMDHGDMTAQYTKGGYTSYRGRGRLDNPYIYRRDPR
                     SIETVSLCNNTRGDILNCEPRKIKGDSHFVSFRDLVISEYVDLGLGVRFDQHRFKSDD
                     PWTLSRTYRNWSWNGGITLKPTEFVSLSYRISNGFRVPAFYELYGKRDHIGLKDNEYV
                     QRAQRSHQLEPEKSTNHEIGVSFKGQFGYLDVSYFRNNYKNMIATACKRIIQKSHCFY
                     NYHNIQDVALNGINLVAKFDLHGILSMLPDGFYSSVAYNRVKVKERKLTDSRLDSVND
                     PILDAIQPARYVLGFGYDHPEEKWGIGITTTYSKAKNADEVAGTRHHGIHRVDLGGKL
                     TGSWYTHDITGYINYKNYTLRGGIYNVTNRKYSTWESVRQSGVNAVNQDRGSNYTRFA
                     APGRNFSLAFEMKF"
     gene            complement(4399..>6110)
                     /locus_tag="PXE26_002148"
     CDS             complement(4399..>6110)
                     /locus_tag="PXE26_002148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL5594695.1"
                     /translation="LLAACSSNGGSFDVQSAKVESQTQTTPKKPSLQDDNSNARRTVS
                     ASETEALLQPGFGFSAKIPRRNLFPQGKEDVAPIGDIKEITGDLTKIPYEEEVKAYGS
                     SADGFSHTHDRNHKLYTRDFNFVRSGYVLHSGAKPEIKPKEILRTGAHGYVYYLGIEP
                     AKAIPTQKATYKGYWDFTTDARKGRDSKYFSNSAGINIGATPENSYDINVDDSEKPMG
                     HTGEFTADFANKTLTGTLVRNGYVSRSKEQKITTIYDIDAKIKGNRFSGKANAKNTDD
                     PYFGKSSTTLEGGFFGGKAQELAGKFLADDKSVFVVFAGKRDAKKDDSESAFDAFKIK
                     LKDLNKSEMDTFGNATHLIINNKQIPLIAEGKKSFAEMKFDDLVTRTIDDKTYRVSVC
                     CNNLDYVKFGTYSEGNNSDTAHQYLVGERTAVADLPTGTVKYRGTWDGVMYSKSGSAG
                     AESPSNSESGTRSLFDVDFVNKKINGKLIANDGVEERPMLTLEGNLKGNGFAGTAKTG
                     NSGFNLDPKSTNGGTVVHINTQFEGGFYGPKATELGGIVHSAETDKDRVSITFGGKRQ
                     IEK"
BASE COUNT         1855 a         1276 c         1083 g         1896 t
ORIGIN      
        1 gccctcaaat cagtactaaa ctgatccata agctattata agaaagtacg gtatttaccg
       61 tactttttat ttggatatcc ctctggttaa aattacttca aatttgttaa taaaaggtta
      121 aaaatgcaaa taggacaata tgcaatcaaa aatcgtattt tccttgcacc tatggctgga
      181 atcacagatc agccttttcg ccgcttatgt agccaacttg gagcaggttt aacattttca
      241 gagatgatgt ctaccaatcc tgatgtatgg catactgaga aatcacgatt gcggttagca
      301 caccacgatg aaataggctt aaatgccgta caaattgcag gttctgatcc tgttgaaatg
      361 gcaaaggctg caaagataaa tgttgagtat ggtgccgata ttattgatat taatatgggt
      421 tgcccggcaa aaaaggtgaa taaaaatatg gcaggctctg ctcttttacg taaccccaaa
      481 ttagtcgctc aaatattaga ttctgtagtc aatgccgttg atgtccctgt gacactaaaa
      541 attagaacag gttgggatca ggaaaataga aattgtctgc aaattgcgaa aattgcagaa
      601 caagccggca taaaagctct cactattcac gggcgtactc gaagctgttt atttaatggc
      661 gaagctgaat atgaaagtat taaggcagta aaagaagcaa tttctatccc agtgatagca
      721 aacggagaca ttgactctgc ggaaaaagca aagtttgttc tcgactatac caaagccgat
      781 gcaatcatga ttgggcgcgc tagctttgga aatccttgga tatttaagga aattaatgat
      841 ttttttgaaa ctggattatc ttcaccatta tcaattgata aaaaatacca attaatgttt
      901 aaacatattg aggatttgca ccaattttat ggtgaagaaa aaggttatcg tattgcacga
      961 aaacatgttg gttggtatac cgaaaaatta aatccggaat caaattttaa acgcactttt
     1021 aatacactaa gttccacaaa agagcaactt tatgcattag aagattttgt taaatcgatt
     1081 catttagaat ctcaattaag aaaagttgga taaaaaaatg ttagagcaac aacctacaca
     1141 aaacccatta acagtaacaa tgttaaatgc acaagcgcag caggttaata aaccacttcg
     1201 cgataatgtg aaagcagcat taaaaaacta tttatctcaa ttaaatggtg aagatccaac
     1261 agaattatac gaattagtat tatctgaaat cgaacaccca atgttagata tggtgatgca
     1321 atatactcgc ggcaatcaaa ctcgtgcagc aacaatgcta ggcattaacc gtggcacatt
     1381 acgcaaaaaa ttaaaaaaat acggtatggg ttaatctaac cgaccgttaa aacacgattt
     1441 taattcgtat gtaattagtt agagccaaca aaaaacgctg aatatactat tcagcgtttt
     1501 tctattttat tttgccgtct aaaacttcat ttcaaatgct aaactgaaat ttctccccgg
     1561 agcggcaaat cgagtgtaat tgctaccccg gtcttggttt actgcattca caccggattg
     1621 gcgcactgat tcccaagtgg aatatttacg attagtcaca ttataaattc ctccacgtaa
     1681 ggtgtagttt ttataattga tgtaaccggt aatatcatgg gtgtaccaag aaccggtcag
     1741 tttgccacct aaatcaacgc gatgtatgcc gtgatgacgt gtgcctgcca cctcatcggc
     1801 gtttttggct ttagaatagg tggtagtaat gccaattccc catttttctt ctgggtgatc
     1861 gtagccgaat ccaagcacat agcgtgctgg ctgaatcgca tctagaatag gatcgtttac
     1921 gctatcgagt cttgagtcgg ttagtttccg ctcttttact tttacacggt tataagcaac
     1981 tgatgaataa aaaccatctg gcagcataga taaaataccg tgtaagtcaa atttagcgac
     2041 taaatttatc ccatttagtg ctacatcttg aatattatgg tagttataga aacagtgtga
     2101 tttttgtatt attcttttac atgctgtcgc aatcatattt ttatagttat tacggaaata
     2161 gctcacatca aggtaaccaa attgaccttt aaagctaact ccaatctcat gattagtcga
     2221 tttttctggc tctaactggt ggctacgttg cgcgcgttgc acatattcgt tatctttaag
     2281 cccaatatga tcacgtttac cataaagttc atagaatgca ggcactctaa aaccgtttga
     2341 aatgcgataa gaaagcgata caaactctgt tggtttaagc gtaatcccac cattccaaga
     2401 ccaatttcga taagttcggc taagtgtcca cggatcatca gatttaaatc gatgttgatc
     2461 aaaacgcacc cctaatccca aatccacata ctcgcttatc actagatcgc ggaagctaac
     2521 aaaatggcta tcgcctttaa ttttacgcgg ttcacagttt aagatgtcgc cgcgtgtatt
     2581 attacacaaa gataccgttt caatactgcg tggatcgcgg cgataaatat atggattatc
     2641 taaacgccct ctaccgcggt agctggtata accgcctttg gtatattggg cagtcatatc
     2701 cccatgatcc ataagcgaat taaatcgatc aaagcccaac cctaaattca gtttgtgggt
     2761 ttgcttaaat acgccttgac cagcatttag cgctttatca aattctaaat gaatgacacg
     2821 atgcttttct tggtaattat tacgctcagt tcgatacata gaccaagatt tatccaaagt
     2881 cgggcggcaa tttttatcta ccacaggata atcgctacaa tgcaagcgat gtagccggct
     2941 atatagttca atatcttgtt tatccgcact gagtttaatg ctatccaacc agcgattatt
     3001 ctctggttta tatttatagg tgaatcctaa acgacgtttg tggtgacgtt catcaaaaaa
     3061 cttcacatgg ctatagcgca acccataagg gatccttggc ttgaacacta agccatctaa
     3121 aatattatcc ccttcataaa catagttcct aagtgataag ttaatatcgt cttttgtata
     3181 gtaagctggc gtttgcatat cacggatatc gtagcgttgt tttgtatctt ctaagattgc
     3241 gccaagataa tgagacgagt taaagtgata gccaaacttc ataaaaacag aattactctt
     3301 gtaatctaaa gggtttggtg caatgcgatc tttaccggta tattcttggg ctgagagctg
     3361 ctcagtgcga taaggaatct gctcaagctg tttgcgctct tcaggcgtat attccggaaa
     3421 tgttctcact gggaaattat cgcggttcaa cttaaccctt gcacgaggag tacaatctaa
     3481 tgttgggcaa gtatcttcca caataaaaaa agatcctcca ggagcattct gtgcggaatt
     3541 tgggtaaaga tcgtagcgat tttcaaagcc ggttatacgc cgaatattat gttttaattt
     3601 atttgcctcg gaatgaattt tggtctcttt accgtgtcgg tgagttgcaa taacaagtgc
     3661 ttcaaaacca cccgcctcac cagccgctgc gatagactgt aaaaaatggc tatttttgct
     3721 ggcataagag gtcttactat ctaagcccca atgctgcccc tctttaataa tatcctgcgc
     3781 atctttagta cgaaaaccaa tagcaccacc tagcgcacca gagccatatt ccgcagaact
     3841 tgctcctttg cttaactcaa ttgaacgaat gttttcatac tcaatctcat taattgcacc
     3901 accattagca tctgaaccta gcgtatgata atgctgcgct tgtggtagcc catcaacaag
     3961 taagctgaca cggtttttat ctacacctcg aatggcatag ccactacttg caccgcgacc
     4021 ttgttccacc accgaaatac cagggtcata gcgagttaaa tcacgaatac caagaatttg
     4081 atttttactc atttcgtgat aatttttcac tactttcccc aagccagtta cttcgttttg
     4141 acgttcgtga gcataatggc tctctgtcac aataacttca tccagaacag ctagatcgtt
     4201 attttcttct atttttttat tttcagtcgc agcaccgtat gaatgagaaa gagcaaataa
     4261 cactgttaag gcaacaggtg aatagcgaaa atgatgatat ttcattatca ttagataggg
     4321 tctcctttat ttaaattttg caaattttta taaaaaattg cccgcttgct atctacaacc
     4381 agcaaagggg aattatgatt atttttctat ttgacgtttt ccgccgaatg taatactgac
     4441 tctatcttta tccgtttctg cactatgtac aataccacct aattccgtcg ccttagggcc
     4501 ataaaagccc ccttcaaatt gagtatttat atgcactacc gtgccaccat tcgtactttt
     4561 cggatcaaga ttaaaaccag aattgcccgt tttggctgtg cctgcaaaac cattcccttt
     4621 cagattgcct tcaagtgtca gcattgggcg ttcttcaaca ccatcattag caatcagctt
     4681 gccattaatt tttttattga caaaatctac atcgaatagt gaacgagtac cactttcgct
     4741 gttacttggc gattcagccc ctgccgagcc agatttactg tacattaccc cgtcccaagt
     4801 acctcgatat tttactgtcc ctgttggcaa atctgccaca gctgtacgtt ctcctactaa
     4861 atattggtga gcagtatcac tattatttcc ctcgctataa gtcccaaatt tgacataatc
     4921 taaattatta cagcagactg aaactcgata cgttttatca tcaatagtac gggtaaccaa
     4981 atcatcaaat ttcatctcgg caaagctttt tttgccttcc gcaataagtg gaatctgctt
     5041 attgttaata atcaaatgtg tcgcattccc gaaagtatcc atctcagatt tatttaaatc
     5101 tttaagttta attttgaaag catcaaaggc agattcacta tcatcttttt tagcatctcg
     5161 tttgccagca aaaacaacaa ataccgactt atcatcagct aagaatttac cggcaagttc
     5221 ttgagccttc ccaccaaaaa atccaccttc aagtgtcgta gagcttttac caaaataagg
     5281 atcatcggta ttttttgcgt ttgctttacc agaaaagcga ttacctttaa tttttgcatc
     5341 aatatcgtaa attgttgtaa ttttttgctc tttgctacga ctaacatacc cattacgaac
     5401 caatgttcca gttaaagttt tattagcaaa atcagccgta aattctcctg tatgccccat
     5461 tggtttttca gaatcatcaa cattaatatc gtaactattt tccggtgtgg cgccaatatt
     5521 gatgcctgcg gaattagaaa aatatttact atctctccct tttctcgcat cggtagtaaa
     5581 atcccaatat cctttataag tagctttttg agtaggtatt gcttttgccg gctctatacc
     5641 taaatagtaa acatacccat gtgcacctgt tctcaaaatt tctttaggct ttatttcagg
     5701 ttttgcacca gaatgcagaa catagccgga acgaacaaaa ttaaaatctc tagtatacaa
     5761 cttatgattt ctatcatgag tatggctaaa tccatcagca ctactaccgt acgctttaac
     5821 ctcttcttca tacggaattt ttgtcagatc tccagtaatc tcttttatat caccaatagg
     5881 ggctacatct tccttcccct gcggaaagag attacgacgc ggaattttgg ctgaaaaacc
     5941 aaaccccggc tgcaataaag cttcagtttc agaagcgctt actgtacgtc ttgcgttact
     6001 attatcatct tgtaaacttg gctttttggg ggtagtttgc gtttgagatt caactttggc
     6061 agattgaaca tcaaagcttc caccatttga ggaacaagca gcaagtagcg
//
LOCUS       DANLZD010000140         6074 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.140, whole genome shotgun sequence.
ACCESSION   DANLZD010000140 DANLZD010000000
VERSION     DANLZD010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6074)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6074)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6074
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.140"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            70..1083
                     /gene="cas1c"
                     /locus_tag="PXE26_002149"
     CDS             70..1083
                     /gene="cas1c"
                     /locus_tag="PXE26_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003762781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated endonuclease Cas1"
                     /protein_id="HDL5594696.1"
                     /translation="MRKLQNTLYITTQGSYLHKERETLVVEQDRKKVAQLPIHSIGHI
                     FCFGNVLVSPFLMGFCGENNVNLAFFTENGRYLGRLQGRQSGNVLLRRAQYKKSETNP
                     VPVARNIIAAKIQASKRVLQRQIRNHGENADLQSTITALNYSLQQLKTADNLDLIRGI
                     EGDAAARYFGVFSHLIKENSGFHFDGRNRRPPRDGVNALLSFLYSIVGKDISGALQGV
                     GLDPQIGFLHADRSGRDSLAQDILEEFRAWWVDRMVLSLINRGQVKPDDFVTEASGAV
                     TLKPEARKLLFQTLQAKKQEKIIHPFLEEEVEIGLLPYIQAMLLARHLRGDLAEYPPF
                     LMR"
     gene            1150..1443
                     /gene="cas2"
                     /locus_tag="PXE26_002150"
     CDS             1150..1443
                     /gene="cas2"
                     /locus_tag="PXE26_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005540845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HDL5594697.1"
                     /translation="MLMLITYDISFDDPEGQARLRRIAKHCLDYGVRAQYSVFECDVT
                     PAQWVTLKNKLLATYNPDCDSLRFYHLGSKWRNKVEHHGAKPSVDIFKDTLIL"
     repeat_region   1635..2603
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=1635..1654
                     /rpt_unit_seq="cagccacctacgcgtggctg"
     gene            2853..4328
                     /gene="rng"
                     /locus_tag="PXE26_002151"
     CDS             2853..4328
                     /gene="rng"
                     /locus_tag="PXE26_002151"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HDL5594698.1"
                     /translation="MSSTELLVNVTPSETRVALVENGILKELHIEREAKRGIVGNIYK
                     GRVTRVLPGMQSAFVDIGLEKAAFLHASDIVSHTECVDENEKKQFLVKDISELVREGQ
                     DIVVQVVKDPIGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESEEERARLKSLVE
                     PYCDELGGFIVRTAAEEATEESLKQDVEFLKRLWRKVLERKGKYSAKSMLYGELALAQ
                     RVLRDFIGTHINSVRIDSKLTYEQVREFLAEFMPELTDCVTLYTGQQTLFDAYGVEKA
                     IQKALDKRVDLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLAHTIFNTNIEAIQAIAH
                     QLQLRNLGGIIIIDFIDMQEEEHRERVLQSLQEALKGDRVKTNVNGFTQLGLVEMTRK
                     RTRESLERILCCDCQACQGRGTVKTVETVCYEIMREIVRVHHLFKTENIHVYAAKDVA
                     EYLINEESHALLAELQAFIGKKIEIKLEPYYHQEQFDVVVM"
     gene            4482..5984
                     /gene="lysS"
                     /locus_tag="PXE26_002152"
     CDS             4482..5984
                     /gene="lysS"
                     /locus_tag="PXE26_002152"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012054447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HDL5594699.1"
                     /translation="MSEVENQELDLNGEMLARREKLNKIREQGNAFPNTFRRDALAKD
                     LHAQYDAVEGETLKEQNIQVKVAGRIMLKRVMGKASFFTIQDVSGAIQLYVARDNLSD
                     SVYEEKVSLWDLGDIVGVEGALFKTKTGELTVRCSEVQLLTKSLRPLPDKHHGLTDLE
                     TRYRQRYLDLISNEESRRTFMIRSQVVSGIRKFFLERDFIEVETPMLQVIPGGAAAKP
                     FITHHNALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMIEY
                     YQAYADYHDLMDNTEELLRQLALDILGTTDVPYGDYVFDFGKPFERITMHDAIVKYGN
                     GIQREDLDSFEKSVEIAKGLGIEIQKSWGLGSVVNAIFEEVAEHQLIQPTFLMAHPAE
                     ISPLARRNDENPEVTDRFELFIGGREIGNGFSELNDAEDQAERFDAQVAAKDAGDDEA
                     MFKDEDFIVALEHGLPPTAGEGLGIDRLVMIFANAPSIRDVILFPAMRQK"
BASE COUNT         1809 a         1100 c         1405 g         1760 t
ORIGIN      
        1 acatcaaaaa tcagaaaaat atatttaaat aattatgatg tgagattaaa gttaaaggga
       61 ttttcaacca tgcgcaaact acaaaacacc ctctacatta ccacccaagg tagctatttg
      121 cacaaagagc gagaaacctt ggtggtggag caagatcgga agaaagtggc acagttgccg
      181 attcattcca ttgggcatat tttttgtttt ggcaatgtgt tagtgtcgcc gtttttaatg
      241 ggattttgtg gcgaaaataa cgtaaattta gcgtttttta ccgaaaatgg gcgttatctt
      301 gggcggttgc aggggcggca aagtggtaat gtattgttac gccgagccca gtataaaaag
      361 tcggagacca accctgttcc tgtggctcgc aacatcattg cagccaaaat tcaagcatct
      421 aagcgggtgt tacaacggca aattcgtaat cacggcgaaa atgctgacct tcaatcgaca
      481 attaccgcat taaattacag cctgcaacag ttgaaaacag cagacaattt ggatttgatt
      541 cgtggcattg agggcgatgc tgcggctcgt tattttgggg tgttttctca tcttatcaaa
      601 gaaaatagcg gtttccactt tgacggacgt aatcgccgcc cacctcgtga cggtgtgaat
      661 gcgttgcttt catttcttta tagcattgta gggaaagata ttagcggggc attgcaaggc
      721 gtggggcttg atccccagat tggctttttg catgcagatc gttcggggcg agatagctta
      781 gctcaagata ttttggagga atttcgagcg tggtgggtgg acagaatggt gctgtcgctg
      841 atcaatcgag ggcaggttaa gcctgatgat tttgtgacgg aagccagtgg tgcggtaacg
      901 ctcaagcctg aagccagaaa attactattt caaaccttgc aagcgaaaaa acaagaaaaa
      961 atcatccacc catttttaga ggaagaagtg gaaatcggct tgttacctta tatccaagcg
     1021 atgttattgg ctcgtcattt gcgtggcgat ttggcagaat atccgccgtt tttaatgcgt
     1081 taaaatctgc aaaattttgt tgaaatttga ccgcttgttt atgttttatt cattgaggaa
     1141 ttagcaacta tgctgatgtt gattacctac gacatttcat ttgatgaccc cgaagggcag
     1201 gctcgcctac gccgtattgc taagcattgt ttggattatg gtgtgcgggc gcaatattct
     1261 gtgtttgagt gtgatgttac tcctgctcag tgggtaacat tgaaaaataa attattggca
     1321 acttacaacc cagactgtga tagtttgcgc ttttaccatt taggcagtaa atggaggaat
     1381 aaagttgagc accatggcgc aaaaccttca gtggatattt ttaaagatac gctgatttta
     1441 taaatcgcta gcctgtagtt ctcataaaaa tgtagcaagg ttagcgaatc tatattgttc
     1501 tttaataatc aaggaattag aaaaaataag gcacaatata ttggcgatat gctatacttt
     1561 atccactctc tacaaaacgt tagcgaataa agggctaaaa agcctgatat ttcaatacgt
     1621 tatcttatag ggaccagcca cctacgcgtg gctgcgaatt gaaaccctat aacgagcaat
     1681 ggcattttga tctacggtaa accagccacc tacgcgtggc tgcgaattga aacttcttga
     1741 atacctccgg agtcagttaa gataaggcca gccacctacg cgtggctgcg aattgaaacc
     1801 tttttcaaga atcaagatta agagatccaa acaaccagcc acctacgcgt ggctgcgaat
     1861 tgaaaccacc gctgctactt cggttatcgg agtagtttgc acccagccac ctacgcgtgg
     1921 ctgcgaattg aaacgtggca cagtaacacg agcagatgct gataaacgcc cagccaccta
     1981 cgcgtggctg cgaattgaaa ctgcgatttt tggatttttc gggcgataaa tgataccagc
     2041 cacctacgcg tggctgtgaa ttgaaactcg tggctggtta tacaaagaaa agcattgttg
     2101 ggcagccacc tacgcgtggc tgtgaattga aacttaaatc taaagctaaa gctattttat
     2161 taattaaagc agccacctac gcgtggctgt gaattgaaac tttaccgttt accgattgga
     2221 ttttaatgct agaggcagcc acctacgcgt ggctgtgaat tgaaacccta aattgccgta
     2281 aaaatctgcc attagctacg cgcagccacc tacgcgtggc tgtgaattga aacctcataa
     2341 cgaatccaat cctgttcggt taatccccgc agccacctac gcgtggctgt gaattgaaac
     2401 aggggcgtgt accgcaatca attttaatta taaccaagca gccacctacg cgtggctgtg
     2461 aattgaaact ttatctgttg cggtcaattg tatatcttga atttgcagcc acctacgcgt
     2521 ggctgtgaat tgaaacctcg tcttgaattg gaaaatcaag ggcgacaata ggcagccacc
     2581 ttcgcgtggc tgtgtattga aacggtgtac ccacaaatcc tatgttttcg ccattggctg
     2641 ctaccttcgc atcaatatat attgaaatat caatggcaaa tttgtatgtt gttaattaga
     2701 ctgattgcat ctgctatgta tcatagtaat gacgaaaata ttctattttg caaaaaataa
     2761 tcagaaatta cccgcttgtt cgaactgagt ttttgttttc taagatgtga aatgatacac
     2821 tttagatagt tttaaaatat agagacagta agatgagtag tacggaatta ttagtgaatg
     2881 ttaccccaag cgaaacaagg gtagcgttgg tagaaaacgg aatattgaaa gaattacata
     2941 ttgagcggga agctaaacgc gggattgttg gtaatattta taagggaagg gtgacaaggg
     3001 tattaccagg tatgcaatct gcttttgtgg atatcggctt ggagaaggct gcttttttgc
     3061 acgcttctga catcgtttcg catacggaat gtgttgatga aaatgaaaag aagcaatttc
     3121 tggttaaaga tatttctgaa ttggtgcgtg aagggcaaga tatagttgta caagtagtga
     3181 aagatccaat tggtactaaa ggagctaggc tcactactga tattacgtta ccatctcgtt
     3241 atttagtgtt tatgccagaa aatagccatg tgggagtatc tcagcggatt gaaagtgaag
     3301 aagagcgtgc tcgtttaaaa agcttggttg agccttattg tgatgaactt gggggcttta
     3361 ttgtacgtac cgctgcagaa gaggcaactg aagaaagttt aaagcaagat gttgaatttt
     3421 taaaacggtt gtggcgtaaa gtattagaac gaaaagggaa atattccgca aaatcaatgc
     3481 tttatggaga gcttgcgctt gctcaaaggg tactgcgtga ttttattggt acacatatca
     3541 attcggttag aatcgattca aagctaactt atgagcaagt gcgagaattt ttagctgagt
     3601 ttatgccaga attaacggat tgtgtcaccc tctataccgg tcagcaaact ttatttgatg
     3661 cctatggtgt agaaaaggca atccaaaagg cattggataa acgggttgat ttaaaatcgg
     3721 ggggctattt aattattgag caaactgagg cgatgacgac tattgatatt aatactggtg
     3781 cttttgtcgg acatcgtaac cttgcacata cgattttcaa cacaaatatt gaagcaatac
     3841 aggcaattgc acaccagcta cagttgcgta atttaggtgg tattatcatt attgatttta
     3901 ttgatatgca agaggaagaa catcgtgagc gcgttttaca atcgttacaa gaggcattaa
     3961 aaggcgatcg tgttaaaacc aatgtgaatg gctttactca gcttggcttg gtggagatga
     4021 ccagaaaacg tacaagggag agtctagagc gaattctttg ttgcgattgc caagcttgcc
     4081 aagggcgtgg cacagtgaaa actgtagaga cggtttgcta tgaaattatg cgtgaaattg
     4141 tgcgtgtaca tcatttgttt aagacagaaa atattcacgt ttatgcagct aaagatgttg
     4201 ctgaatattt aattaacgag gaaagccacg cattattggc tgagcttcag gcgtttatcg
     4261 gtaaaaaaat tgagattaaa cttgagccat attatcatca agagcagttt gatgtggtcg
     4321 tgatgtaatc tattacttgg ttgaggctaa atagttagcc tcaatatcgt tagttacaaa
     4381 aaatttagaa aatctgaccg cttgtttcct atccaaattc ctcaaaataa cgtataatcg
     4441 tccagtttta tttatccttt tttgaaatct aaggtaattc aatgtctgaa gtagaaaatc
     4501 aagaattaga tctaaacggt gaaatgttag cccgccgtga aaaattaaac aaaatccgtg
     4561 agcagggtaa cgcatttcca aatacattcc gtcgtgatgc gttagccaaa gatctgcacg
     4621 ctcaatatga tgcagtggaa ggtgaaacct taaaagaaca gaatattcaa gtgaaagttg
     4681 ccggtcgtat tatgttaaaa cgagtaatgg gtaaggcatc tttctttacc attcaagatg
     4741 tgagcggtgc gattcagctt tatgtagctc gtgataactt aagtgacagc gtttacgaag
     4801 aaaaagtcag cctttgggat ttaggcgaca ttgtgggcgt cgaaggtgcg ttatttaaaa
     4861 ccaaaaccgg tgaattaacg gttcgttgct ctgaagttca acttttaacc aagtctttac
     4921 gcccgttgcc ggataaacat cacggtttaa cggatttaga aactcgttat cgtcagcgtt
     4981 atttagactt gatttctaat gaagaatctc gccgtacttt tatgatccgc tcgcaagtag
     5041 tttcaggcat tcgcaaattc ttcttagaaa gagactttat tgaagttgaa acgccaatgt
     5101 tgcaagtgat cccgggcggt gcggcagcga aaccgtttat cactcatcat aatgcgttag
     5161 atgtggatat gtatctgcgt attgctccag agctttactt aaaacgttta gttgtgggtg
     5221 gttttgagcg agtatttgag cttaaccgta acttccgtaa cgaaggggtt tcagtacgcc
     5281 acaatcctga atttacaatg attgagtact accaagccta tgcggattat cacgatttaa
     5341 tggataatac cgaagaactg ttacgccaat tagccttaga tattcttggc acaactgacg
     5401 taccttatgg tgattatgta ttcgatttcg gtaaaccgtt tgagcgtatt acgatgcacg
     5461 atgcgattgt gaaatatggt aacggcattc aacgtgaaga tttagacagc ttcgagaaaa
     5521 gtgtggaaat tgcgaaaggc ttaggcattg aaattcaaaa atcttggggt ttaggctcgg
     5581 tagtcaatgc gatttttgaa gaagtggcag aacatcaatt aattcagcca actttcttga
     5641 tggctcaccc ggcagaaatt tcaccattag ctcgccgtaa tgatgaaaac ccagaggtaa
     5701 ctgatcgttt tgagttattt atcggtggtc gtgaaattgg taatggtttc tcagaattaa
     5761 acgatgcaga agaccaagca gagcgttttg atgctcaagt tgcggcgaaa gatgccggtg
     5821 atgatgaagc aatgtttaaa gatgaagact ttatcgtggc attggaacac ggtctgccgc
     5881 caacagcggg tgaaggttta ggaattgacc gcttagtaat gattttcgct aacgccccat
     5941 caatccgtga tgtaatttta ttcccagcga tgcgtcagaa gtaatcagaa atagaacaaa
     6001 agcacacttc ggtgtgcttt tttgtattac aagcggtcaa atttataata aatatttcaa
     6061 acttaagtga gcat
//
LOCUS       DANLZD010000141         5988 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.141, whole genome shotgun sequence.
ACCESSION   DANLZD010000141 DANLZD010000000
VERSION     DANLZD010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5988)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5988)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5988
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.141"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(62..370)
                     /locus_tag="PXE26_002153"
     CDS             complement(62..370)
                     /locus_tag="PXE26_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDL5594700.1"
                     /translation="MKKYIATMLLAFGLVHSSYAQEKTAQIETKQAEKTVVLHIPEMY
                     CQLCVYLVNKELRAVEGVISTKASMKERKATVVVKESVDNQALIQAVGNLKYTAKVIE
                     "
     gene            complement(372..740)
                     /locus_tag="PXE26_002154"
     CDS             complement(372..740)
                     /locus_tag="PXE26_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594701.1"
                     /translation="MNSSLKSYNHKFITMCVTAIVSAVTSTFCCIGPLVYLVFGISSP
                     WLMELNQLEFLQLPMLLISLAAFGYGFWLLNFSNKIICTKYFSRRTLVILYWVVSVVV
                     MFFLTYPYVLPYILEMWSGE"
     gene            complement(715..1821)
                     /locus_tag="PXE26_002155"
     CDS             complement(715..1821)
                     /locus_tag="PXE26_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HDL5594702.1"
                     /translation="MNKLIASLVASSCATAFAAPVQQNNFHTTTHTYEFTQSYDLVVP
                     QGSKGTTNLWIPLPSDTDYQTVKSIEFEGSYKNAYITENNAYGAKTLFATWDTDAPKR
                     DLKVKMVIQTQDREPMAQGALANYQMPEKITYSVDVLEYLKPTAHIKTDGIVKEYADK
                     IVGNEQNPLKKAELIHKWIVDNMERDNSVLGCGDGDVEKILTTKVLKGKCTDINSVFV
                     ALARASNIPAREVFGIRLGQAVKMGQYSKTAFGSSKDGVANESGGQHCRAEFYLAGFG
                     WVPVDSADVAKMRLAEKKDVDDADVQAVSKYLFGNWEMNWVGFNHGRDFDLYPQPELT
                     PLNNFGYPYAEVGGDPLNSFEAKEFGYEFISKEL"
     gene            complement(2061..3104)
                     /locus_tag="PXE26_002156"
     CDS             complement(2061..3104)
                     /locus_tag="PXE26_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDL5594703.1"
                     /translation="MQPINIAIAGAGFSSRVFHIPFLKQDARFNIVKVYERTSNNAAE
                     WLPNAETVRDFNALLTPEVDLVLITTPNQTHYAMVKESLLAGKHVLVEKPLVATVAEA
                     EELAELAKRQGKVLYVYQNRRWDSHIATAKSLMEQNLLGELVDCEIRFDRYAKEKNVK
                     VWKESGELGTGLVYDLGVHLIDQALYLFGKPEAVYADVRYQHEGALVDDNFDIQLYYA
                     NGFKVVLKASRYAREPSPTFVLHGKLGSYLKQTPDNQEDLLKNGVQPIGKDWNIEEKE
                     NWGILHTEVEGNVVRQPYRNAEVSYQNLFDDLYQAIAHNAEPIIKLEDVIFVLKVIES
                     VFESAKLGQKIYL"
     gene            complement(3208..3492)
                     /locus_tag="PXE26_002157"
     CDS             complement(3208..3492)
                     /locus_tag="PXE26_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594704.1"
                     /translation="MRYWLISLSILLSGCVVPVTPTGQAGIPMPIIIGVSDPLDSKEV
                     HICTLKPFTQEYRSEHSSRGRAKLNVQKQCRANHSEMFCEEKDIVCKTYD"
     gene            complement(3522..3707)
                     /locus_tag="PXE26_002158"
     CDS             complement(3522..3707)
                     /locus_tag="PXE26_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HDL5594705.1"
                     /translation="MKCRQATELISQSCDEKLRLQQHMRLQLHLLVCPKCRNFNKNTK
                     KLGKILRAYCNDKDAPF"
     gene            complement(3704..4270)
                     /locus_tag="PXE26_002159"
     CDS             complement(3704..4270)
                     /locus_tag="PXE26_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HDL5594706.1"
                     /translation="MKSLSSTQIEEIRKQMVKFATLQLADKDLAEDVVQDALTNAYKH
                     SASFRREAALKTWIFAILKNKILDLLRTRKRHIPVSSLCEEEESPSAFFDRHDHWLEH
                     QDVTEWRGVAQSTYQKEFWAIFDICLNKLPAQQARVFMMREHLEMSSAEICQECEISL
                     SNLNVLLHRARLRLQECLSRNWFREESK"
     gene            4379..5332
                     /gene="msrP"
                     /locus_tag="PXE26_002160"
     CDS             4379..5332
                     /gene="msrP"
                     /locus_tag="PXE26_002160"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HDL5594707.1"
                     /translation="MKKLTIQDVTPETIFYQRRKIITALGLGIAASALPKVSMAETQR
                     HLQSLQFKPDPNKGLELTPENKVIGYNNFYEFGVDKSAPAKNAANFKTDPWTLEIGGE
                     VENPFSLNHQQLLNTFPLEERIYRFRCVEAWSMVVPWIGFELARLIEMAKPTSKAKYV
                     VFHTLYDPAQMPGQKNRLLGGGIDYPYVEALRLDEALNSLTLLSVGLYGKTLPPQNGA
                     PIRLVVPWKYGFKSIKSIVKITFAEKRPLTTWESLAPNEYGFYANVNPNVDHPRWSQA
                     SERVIGAGGLLSVKRQPTLMFNGYENEVANLYRGLDLKVNY"
     gene            5332..5916
                     /locus_tag="PXE26_002161"
     CDS             5332..5916
                     /locus_tag="PXE26_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfoxide reductase heme-binding subunit YedZ"
                     /protein_id="HDL5594708.1"
                     /translation="MLTWLRILIHLGCLLPLVWVAQLLYTGNETILGADPIKELEHFL
                     GYGAIVIFCIMFLLGIALQYLKKNQYQILRRPLGLWAFVWAALHISSYLLLELSLDVK
                     LFFSELAGRPYLILGAAAFFILSIMAITSLPMLKRKLGTRWGTIHQWAYPALVLAMVH
                     YYWSVKSVTFDPIIIGVLVLFIVAHKIQAKFAKK"
BASE COUNT         1782 a         1264 c         1141 g         1801 t
ORIGIN      
        1 atgggggaaa aaaggaaggc taaattaaaa aagctcaaac aataatgttt gagctttggt
       61 tttattcaat gacttttgca gtatatttga ggtttccgac cgcttgtatc agggcttggt
      121 tatccacact ttcttttacc accacagtcg cttttcgctc tttcattgag gctttggtgg
      181 aaatcacacc ttctactgct cgtagttctt tattgactaa ataaacgcag agctggcagt
      241 acatttccgg aatatggagg acgacggttt tctctgcttg tttcgtttca atttgagctg
      301 ttttttcttg tgcgtagctt gaatgaacca aaccaaaagc caacagcatc gttgcgatat
      361 attttttcat tttattctcc gctccacatt tccaaaatgt aaggcaatac ataagggtaa
      421 gttaaaaaga acatcaccac cacagaaact acccaataca aaatgaccag ggttctgcgg
      481 gagaagtatt tggtgcagat gattttgttg gaaaaattca gcaaccagaa gccatagcca
      541 aacgcagcga gcgaaatcag caacatcggc agttgtagaa actccagttg gtttagctcc
      601 atcaaccaag gggaagagat gccaaacact aaataaacca gtggcccaat acaacagaat
      661 gtggaggtca ccgccgacac tatggcggtc acgcacattg tgataaattt atggttataa
      721 ctctttagag atgaattcat agccaaattc tttcgcctca aacgagttta acgggtcacc
      781 acctacctca gcataagggt agccaaagtt attcagtggt gtaagttccg gttgtggata
      841 taaatcgaaa tcacgtccgt gattgaagcc tacccagttc atttcccagt tgccgaataa
      901 gtatttcgag accgcttgaa catcagcatc atccacgtct tttttctcgg ctaaacgcat
      961 tttagcgaca tcggcagaat ctacaggcac ccagccgaag cctgctaaat agaactctgc
     1021 acggcagtgc tgcccgccgc tttcattcgc cacgccatct tttgagctac caaatgcggt
     1081 tttggaatat tgccccattt ttaccgcttg ccctaaacga ataccaaaca cttcacgagc
     1141 aggaatgtta gaggcacgag caagtgctac aaacaccgag ttgatgtcgg tacatttacc
     1201 ttttagcact ttggtggtga gaattttctc cacatcgcca tcgccacagc ctagcaccga
     1261 gttatcacgt tccatattat caacaatcca cttgtggata agttccgctt ttttcaacgg
     1321 attttgctcg ttacccacaa ttttatcggc atattctttc acaataccgt ctgttttaat
     1381 gtgagccgtt ggttttaaat actccaatac atcaacagaa taagtgattt tctccggcat
     1441 ttggtaattt gccaacgccc cttgagccat aggctcacga tcttgggttt ggatcaccat
     1501 tttcactttt agatcacgct ttggtgcatc agtatcccaa gtggcaaaca aggtttttgc
     1561 accataagcg ttattttctg tgatataggc gtttttgtaa cttccctcaa actctatcga
     1621 ttttaccgtt tgataatcgg tatcagacgg caacggaatc cacaaattag ttgttccttt
     1681 cgagccttgt ggcacaacta aatcataaga ttgcgtaaat tcgtaagtgt gggtagtggt
     1741 gtggaaattg ttctgttgaa caggagcagc aaaagccgtc gcacagcttg aagccaccaa
     1801 agaggcaata agtttattca ttgaaatgat ccttattaga gtgaaaaaac agttaaaact
     1861 taacatatta agtattctaa ctacggattg aggttgcata ttagccaatc gagatgggaa
     1921 aagcaatggg ggagatgatt ttttagatag tgcaagcgtc cacgcttgta ctagaaacaa
     1981 agctaaaata atcaataggc acaagcgtgg acgcttgcgc catcagagag aataacaagc
     2041 ggtcaaaaat cctcaaaatt ttacaaatag attttttgcc ctaattttgc actttcaaat
     2101 acgctttcga tcacttttag cacaaaaatg acgtcttcga gtttgataat tggctcagca
     2161 ttgtgagcga tggcttggta caaatcatca aacaagtttt gataactgac ttcggcattt
     2221 cgatagggct ggcgaaccac attaccttcc acttcagtgt gtaaaattcc ccagttctcc
     2281 ttttcttcga tattccaatc tttgccaata ggttgtacgc catttttcag caaatcttct
     2341 tgattatcgg gagtttgttt cagataagag cctaattttc cgtgtaatac aaatgtcggg
     2401 cttggttcac gagcatatcg gctggctttc agcaccactt taaaaccgtt agcataatag
     2461 agctgaatat caaagttatc atcaaccaat gccccttcgt gctgataacg cacatcagca
     2521 tacaccgcct ccggcttccc gaaaagatac aaagcttggt caattaaatg tacgcctaaa
     2581 tcatacacta aacctgtacc aagctcgcct gattctttcc atactttaac atttttctct
     2641 ttcgcataac ggtcaaaacg aatttcgcaa tctaccaact ctcccagtaa attttgctcc
     2701 attagcgatt ttgccgtcgc aatatggctg tcccaacggc ggttttggta cacataaagc
     2761 acctttcctt gccgctttgc aagttccgcc aactcttccg cctcagccac tgttgccact
     2821 aacggttttt caactaaaac gtgtttgcct gcaagcaatg actcttttac cattgcataa
     2881 tgggtttgat tcggtgtggt aatcagcact aaatccactt ctggcgttaa aagagcgttg
     2941 aaatcccgca ctgtttctgc attcggcaac cattctgccg cattgttaga ggttcgttca
     3001 tataccttta caatattaaa acgagcatct tgtttcaaaa acgggatatg aaaaactcgg
     3061 ctggaaaagc cggcacctgc gatggcaata ttgatgggtt gcatagacaa tcctcataaa
     3121 attttgatgt tatctgctta aataaacaag cggtcaaatt ttaggaaaat tttgcaaaaa
     3181 acagataaaa tacgaccgct tgtttaacta atcataggtt ttgcaaacaa tatctttttc
     3241 ttcacaaaac atttcactgt ggtttgcacg gcattgcttt tgtacattta atttggctct
     3301 gcctcggcta ctatgttcac tacgatattc ctgagtaaat ggctttagag tacaaatgtg
     3361 aacctctttg gaatcaagtg gatctgagac accaattata atcggcatag ggataccggc
     3421 ttgccccgta ggagtaaccg gcacgacaca gccacttaat agtatgctta aacttattaa
     3481 ccaataacgc atatttttct ccttttaaaa tgtataataa atcagaacgg agcatcttta
     3541 tcgttacagt aagctcttaa tatcttgcct aatttcttgg tatttttatt aaaatttcgg
     3601 catttagggc ataccaaaag atgcaactgc aaacgcatat gttgttgcaa acgaagtttc
     3661 tcatcacaag actgtgaaat aagttctgtt gcttgcctgc atttcatttt gattcctctc
     3721 taaaccaatt gcgagataaa cactcttgta aacgtaaacg agcacgatga agtaatacat
     3781 ttaagttaga gagagaaatt tcacattctt ggcaaatttc cgcactactc atctccaaat
     3841 gttcacgcat cataaatact cgtgcttgct gggcgggtaa tttatttaaa caaatatcaa
     3901 aaattgccca aaattctttt tggtaagttg attgagctac ccccctccat tcagttacat
     3961 cttgatgttc caaccaatga tcgtggcgat cgaaaaaggc acttggtgat tcttcttcct
     4021 cacatagaga actgactgga atatgtcgtt ttcgtgttct gagtaaatct aaaattttgt
     4081 tctttaaaat agcaaaaatc caagttttaa gtgcagcttc tcgccgaaaa gaggctgaat
     4141 gcttataggc attggttaag gcatcctgta caacatcctc agctaaatct ttatcggcta
     4201 gttgtagggt ggcaaattta accatttgct ttctaatctc ttctatctgt gtagaagata
     4261 gactcttcat atatctcctt tagggaatac ccaataaaaa attacactta ttttgtaaga
     4321 attctagatc agctgagtcc aaaataataa caacaattca taaaaaaagg atagttcgat
     4381 gaaaaaatta acaattcaag atgttacacc cgaaactatt ttctaccaac gccgtaaaat
     4441 tattaccgcg ttaggtttag gtattgcagc ttctgcattg cctaaagtaa gtatggcaga
     4501 aacacaaaga cacttgcaat cactacagtt taaaccggat ccaaataaag ggcttgaact
     4561 cactccggaa aacaaagtaa taggctataa caatttctat gagtttggcg tggataaaag
     4621 tgcaccagca aaaaatgcgg caaacttcaa aaccgatcct tggacattgg aaattggcgg
     4681 agaagttgaa aatccgttta gcttaaatca tcaacaattg cttaatacgt ttccactaga
     4741 agaacgcatt taccgttttc gctgtgttga agcgtggtca atggttgtgc cgtggatcgg
     4801 ctttgagtta gctcgcttaa ttgagatggc aaaaccaacc agtaaagcca aatatgtggt
     4861 ctttcacact ttatatgatc ctgcacaaat gccggggcaa aaaaatcgct tgctaggcgg
     4921 tgggattgat tatccttatg tagaagcttt acgcttagat gaagccttaa attcattaac
     4981 actactatcc gtcggtttat acggtaaaac cctgccaccg caaaacggtg ctcctattcg
     5041 cttagtcgtg ccttggaaat atggctttaa aagtattaag tcgattgtga aaatcacctt
     5101 tgctgaaaaa cgcccactca ctacttggga aagtcttgct ccaaatgaat atggctttta
     5161 tgctaatgtg aatccaaatg ttgatcatcc acgttggtcg caagcatctg aacgagtaat
     5221 tggtgcaggc gggttattat ccgtcaaacg ccaaccaaca ctaatgttta atggctacga
     5281 aaatgaagtg gcaaatttat accgtggctt agatttaaag gtgaactact aatgctaacc
     5341 tggttacgta tactcattca tcttggctgt ttattaccgc tagtttgggt agcacagcta
     5401 ttatatacgg gtaatgaaac aatattaggt gccgatccga ttaaagagct ggagcatttt
     5461 ctcggttatg gtgcaatcgt cattttttgt ataatgtttc tacttggtat tgccctacaa
     5521 tacctaaaga aaaaccagta tcaaatttta cgccgtccat tgggcttatg ggcgtttgta
     5581 tgggcagctc tacatatttc aagctatcta ttgttagaat taagccttga tgtaaaatta
     5641 ttttttagcg agcttgccgg tcgcccatat ttgattttag gagcagctgc ttttttcatt
     5701 ctaagcataa tggcaataac ttcgctgcct atgctaaaac gaaaattagg aacacgctgg
     5761 gggacgattc accagtgggc ttatcctgca ttagtattgg cgatggtaca ttattattgg
     5821 tcggtaaaga gcgtaacatt cgatccaatt atcatcggag tcttagtgct gtttattgtt
     5881 gctcataaaa tacaggctaa atttgcaaaa aaatagcaaa atcacaccgc ttgcagcagt
     5941 caaactacat acaaaaaata aggggctgtc ctagataacg actaaaac
//
LOCUS       DANLZD010000142         5951 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.142, whole genome shotgun sequence.
ACCESSION   DANLZD010000142 DANLZD010000000
VERSION     DANLZD010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5951)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5951)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5951
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.142"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..300
                     /locus_tag="PXE26_002162"
     CDS             <1..300
                     /locus_tag="PXE26_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HDL5594709.1"
                     /translation="NRDFSALQTLLSDDFELYSSTGEVIDKQEWIKLIQKRVLEFDKV
                     DLLSTDFQGNQSSGLLRVNGEFFGIERDNVVVEMNIRTIVRNTERQIKCIVIKEV"
     gene            313..1206
                     /gene="murQ"
                     /locus_tag="PXE26_002163"
     CDS             313..1206
                     /gene="murQ"
                     /locus_tag="PXE26_002163"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HDL5594710.1"
                     /translation="MNALGQMITEQRNPNSMNIDRLSALDIVQVINQEDKQVAIAVEQ
                     CLPQIAQAVEKIVQAFEKGGRLVYVGAGTSGRLGVLDASECPPTYGVKPEMVVGLIAG
                     GERALRFPIEGAEDNREQGKVDLQAVNFSEKDVLVGIAASGRTPYVLGAMEYAKQLGA
                     TTVSIASNPNSAMAQIADIAIETVVGPEVLTGSSRMKSGTAQKLVLNMLTTASMILIG
                     KCYQNLMVDVQATNEKLKARAIRIVMQATECEREVAEDTLKLAENNAKLAIMMILGNL
                     DKQKAEDLLSQNQGRLQKALK"
     gene            complement(1290..2234)
                     /gene="prmB"
                     /locus_tag="PXE26_002164"
     CDS             complement(1290..2234)
                     /gene="prmB"
                     /locus_tag="PXE26_002164"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDL5594711.1"
                     /translation="MFKYNTELLDEISALPIVNDLVTIQDMMRWGYSYFNASDLYYGH
                     GYDNAWDEAQQLVLAGLYLPFDVPETLYSSRLTRVEKERIINLICERLGSRKPVAYLT
                     NSAWFCGGEYYVDERVIVPRSPIGELIKKGFKGIIKNEPHRILDMCTGSGCIAIACAE
                     RFPEAEVDAVDLSLDALDVAQINIERHQVSHRVFPICSDLFNNLPQDKYDLIVTNPPY
                     VDEEDLGDMPEEFHHEPALALGSGKDGLDLTKRILAQAADYLNDDGVLVCEVGNSMVH
                     LIEQFPSVPFNWLEFEHGGLGVFSLTKEELVKHRHLFA"
     gene            2327..2872
                     /gene="smrB"
                     /locus_tag="PXE26_002165"
     CDS             2327..2872
                     /gene="smrB"
                     /locus_tag="PXE26_002165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease SmrB"
                     /protein_id="HDL5594712.1"
                     /translation="MNDTLLDDEFALFREAAKGTKKLTQNTFVPKAEPRKKLQELREL
                     KEKADTEFYFSDEYEPLLKEENEKVKYLREDVDPYILKQLRRGDFQPELFLDLHGLTR
                     EKAKKELAALILACEREKVYCASVMTGFGTRTLKDQIPRWLVQHPKVMALHQAPKEWG
                     GDASILILVEQPENPEKMFGR"
     gene            2936..3421
                     /locus_tag="PXE26_002166"
     CDS             2936..3421
                     /locus_tag="PXE26_002166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/prolyl-tRNA synthetase associated
                     domain-containing protein"
                     /protein_id="HDL5594713.1"
                     /translation="MSEQTFHQLTALLDSHRARYRVVGHPSAGKSEEVAKIRGTEIGQ
                     GAKALVCKVKGNGVKQAVLAILPADYQADLTKIAEHLGGLRASLASPAEVAELTDCVF
                     GAIPPFSFHPDLLLVAEPSLFERYAELAFNAGTLERSIILNTEDYQKIVNPVLVQFAK
                     S"
     gene            complement(3423..4172)
                     /locus_tag="PXE26_002167"
     CDS             complement(3423..4172)
                     /locus_tag="PXE26_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDL5594714.1"
                     /translation="MEKRFEINEQGLSIRCKLFYEKELQQIENVVIVLHGFGSSKDLK
                     SNTKFGERLSSKYKGYAALAFDFPCHGDDARKKLSVEESITYLQLVIDYAKTSLNAKN
                     LYAYGTSFGGYLTLKYLAEKGNPFRKIALRAPAVQIYHSLMNRLSEEERQKLAKGREI
                     LWGFDRQMKISQAFFDELTDITQNDYLDYAEQILILHGTEDEMVALSTSQQFADNNVI
                     ELLPIEGADHAFSNPKLMDIAIGKIVEFFAP"
     gene            4344..5207
                     /locus_tag="PXE26_002168"
     CDS             4344..5207
                     /locus_tag="PXE26_002168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA/RhaT family transporter"
                     /protein_id="HDL5594715.1"
                     /translation="MLQLILAILCSVTVGVLIKFARQKGIRIDQSIAVNYIVTTTMTF
                     LLLKPDYQGQSITDIIANNPTSYIFVILSITLPTIFLVQAKALEFAGIIRTDAAQRLS
                     LFLPILAAFTIFGEQVTQNKLIALLLAFVALGCLLWKGNQGMEKGGKIAIISLALVWV
                     GYGVNDILFKQIAKSGSAFPVTLSIAFIGAGCFMFIYLLLKRTQWHVPSVLTGLLLGV
                     LNFGNILFYIQAHQAMKDDPTLVFTGMNLGVICLGTFVGAFFFKEKIHKVNYLGVAIA
                     IVAIICLFYWR"
     gene            5331..5924
                     /locus_tag="PXE26_002169"
     CDS             5331..5924
                     /locus_tag="PXE26_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594716.1"
                     /translation="MKLKALSTLIASSMLYSQSFAVPPEKTAEEPQPFFNKTESGYDL
                     VFNDQNYRLIETELNGEKIQFRAFERIVYVNNPIEPDYQTINLYVPEAYYNNGEINGY
                     QADTAPIFLPNSVGGYMPAKAASYDKKRRDGSPGTILVALSKGYVVASVGARGRTLQK
                     EGKYTGKAPSAIIDSKSAAHKACRFESDHWHHSLCKI"
BASE COUNT         1786 a         1161 c         1341 g         1663 t
ORIGIN      
        1 aaccgtgatt tttcggcttt gcaaacatta ctaagcgatg attttgagct ttattcatca
       61 acaggtgaag tgattgataa gcaagaatgg atcaaattaa tccaaaagag agtattggaa
      121 tttgataagg ttgatttgct atctaccgat tttcagggga atcaatcatc tggattatta
      181 agagtaaatg gtgagttttt tgggatagag cgggataatg tggtggtaga aatgaatatt
      241 cgaaccattg tgagaaatac agaacgccaa attaaatgta ttgtgattaa agaggtttaa
      301 gtgtcgcaac tattgaatgc cttagggcag atgattaccg aacaacgtaa tccgaattcg
      361 atgaatattg accgcctttc agcgttagat atagtccaag tcatcaacca agaagacaaa
      421 caagtagcga ttgcggtgga gcagtgcctg cctcaaattg cacaagcggt ggaaaaaatt
      481 gtgcaagcct ttgagaaagg tggacgattg gtttatgtcg gtgccggcac gagcggaaga
      541 ttaggggtgc ttgatgcttc ggaatgtccg cccacttatg gcgtaaaacc tgaaatggtg
      601 gttggattaa ttgccggtgg tgagcgggca ttacgtttcc cgattgaagg ggcggaagat
      661 aatcgtgagc aaggcaaagt agatttacaa gcggtcaatt ttagcgaaaa agatgtattg
      721 gtcgggattg cagccagtgg gcgaacgcct tatgtgttag gggcgatgga atatgctaag
      781 caacttggtg cgaccacggt gtcgattgcc agtaacccaa attcggcaat ggcacaaatt
      841 gcggatattg cgattgaaac cgttgtcggg ccggaagtgc taaccggttc cagccgtatg
      901 aaatccggca cagctcaaaa attggtattg aatatgctca ctactgcgtc gatgatttta
      961 atcggtaaat gctaccaaaa tttaatggta gatgtgcaag caactaatga aaaactcaaa
     1021 gctagagcaa ttcggattgt gatgcaagcg acagaatgtg aacgagaagt ggctgaagat
     1081 acactaaaat tagccgaaaa taacgctaaa ttggcaatta tgatgatttt aggtaactta
     1141 gataagcaga aagccgaaga tttattaagc caaaatcaag ggcgattaca aaaagcgtta
     1201 aaatagaagt atgtctgctc tccccttgtg ggagagagac agatcaatca ttcattcaga
     1261 atgattgatc agagagaggg gaggcagatt taagcaaata aatggcgatg tttcactagt
     1321 tcttctttgg ttaaactgaa cacccctaag ccaccgtgtt caaattccag ccagttaaac
     1381 ggcacactgg ggaattgttc gattaaatgc accatactgt tgccgacttc gcagactagc
     1441 acgccatcat catttaagta atcagcggct tgagcaagaa tccgcttggt taaatctaac
     1501 ccatctttgc ccgagccaag agctaatgcc ggctcgtgat ggaactcttc gggcatatcg
     1561 cctaagtctt cttcatcaac ataaggcgga ttagtcacaa ttaagtcgta tttatcttgc
     1621 ggtaaattgt taaacagatc ggaacagatc gggaaaactc ggtgagacac ctgatgacgc
     1681 tcaatattaa tttgagcaac gtctaaggca tcaagggaaa gatcaaccgc atcgacttct
     1741 gcttccggaa aacgctcggc acaggcaatc gcaatacaac cgctgccggt acacatatct
     1801 aaaattcgat gtggctcgtt tttgataatg cctttaaacc cttttttgat cagctcacca
     1861 atcggtgaac gtggcacgat cacacgctca tcgacataat attcaccgcc acaaaaccaa
     1921 gccgagttgg taaggtatgc tacaggtttg cgagagccta aacgctcaca gattaaattg
     1981 atgatacgtt ctttctcaac tcgagttaag cgagaggaat aaagtgtttc cggtacatca
     2041 aacggcaaat aaagccctgc caacactaat tgttgtgcct cgtcccacgc attatcgtag
     2101 ccgtgcccgt aataaagatc agaggcatta aaatagctat acccccaacg catcatatct
     2161 tgaatagtga ctaaatcatt cacaatgggc agggcggaaa tttcatcaag aagttcggta
     2221 ttatatttaa acattggcgt gccttttttc gtattgttaa aatggctgtg ttataccaca
     2281 ttttgctttg tgttagaatg taaaaatgaa taagaaggaa aagataatga acgatacgtt
     2341 attagacgat gaatttgcat tattcagaga ggcagcaaaa ggcacgaaaa agctgacaca
     2401 aaataccttt gtgccgaaag cggaacctcg caagaaattg caagaattgc gagaattaaa
     2461 agaaaaagct gatacagaat tttatttctc ggatgaatat gagcctttgc tgaaagaaga
     2521 aaatgaaaaa gtgaaatatc tgcgagaaga tgttgatcct tatattctca aacagttacg
     2581 gcgaggcgat ttccaacccg agctgttttt agatctgcat ggtttaactc gagaaaaagc
     2641 gaagaaagag ttggcagcgt tgattttagc ctgtgagcgg gaaaaggtat attgtgccag
     2701 tgtgatgacc ggctttggca ctcgcacgct caaagatcaa attccacgct ggttggttca
     2761 gcacccaaaa gtaatggcgt tgcaccaggc cccgaaagag tggggcggag atgcctctat
     2821 tctaattttg gttgagcagc ctgaaaatcc tgaaaaaatg tttgggcgtt aaaattcggc
     2881 tgaattgcca attttttatt aaaaacgacc gcttgtgtat cattaaggag aaatgatgtc
     2941 agaacaaact ttccaccaac ttacagcatt attagattcg catcgagctc gctatcgagt
     3001 ggtaggacat ccttctgccg ggaaatcgga agaagtggca aaaattcgag gaacagaaat
     3061 cgggcaaggg gcgaaagcct tagtttgcaa ggtaaaaggc aatggggtaa agcaagctgt
     3121 gcttgctata ttacctgctg attaccaagc ggatttaaca aaaattgcag agcatcttgg
     3181 tgggttaaga gcctcacttg ccagcccggc tgaagtggca gaattgaccg attgtgtatt
     3241 tggggcaatt ccgccgttta gctttcaccc cgatttatta ttggtggctg agccaagtct
     3301 gtttgagcgt tatgctgaat tagcctttaa tgccggtacg ttggaacgtt cgattattct
     3361 gaataccgag gattaccaaa agatagttaa tcctgtgttg gttcaattcg ccaaaagcta
     3421 ggttatgggg cgaaaaactc cacgattttg ccaatagcga tatccattaa tttagggtta
     3481 gaaaaagcgt gatctgcccc ttcaatcggg agcagttcaa tcacgttatt atcggcaaac
     3541 tgctgtgaag tgcttaacgc caccatttca tcttccgtgc cgtgcagaat taaaatttgc
     3601 tcggcataat ccaaataatc gttttgggta atatcggtta gctcatcaaa aaaggcttgg
     3661 ctgattttca tctggcgatc aaacccccac aaaatttctc gccctttggc aagtttttgc
     3721 cgttcctctt ctgacaagcg gttcattaac gaatggtaga tttgtactgc cggtgcccgc
     3781 aatgcaattt tccgaaacgg attgcctttt tccgccagat atttcaaggt taaatagccg
     3841 ccaaaactag tgccgtaggc atacagattt ttagcattca ggctggtttt ggcataatca
     3901 atcaccagtt gcagataagt aatggattcc tcaaccgaga gttttttacg ggcatcatca
     3961 ccgtggcaag ggaaatcaaa ggcaagggca gcgtagcctt tatattttga gctaaggcgt
     4021 tccccaaatt tggtattcga tttcagatct ttagacgaac caaagccgtg caacacaatc
     4081 actacattct cgatctgctg caattctttt tcataaaaca gtttacagcg aatgctgaga
     4141 ccctgttcat taatctcaaa gcgtttttcc attttatgtt aagtattgaa attgaagatg
     4201 acaaaatttt agcactattt gagtgcaagc ggtcggatct ctcgcaaaat ttgcaaattt
     4261 tccggtaaat ttaaccgctt gtactagcca aaatttaagc atatttatag aatacagcct
     4321 tcgtttttaa aaggagaaat gaaatgttac aacttatttt agcgatttta tgtagcgtga
     4381 ctgtaggcgt gttgattaaa ttcgcccgcc aaaaagggat tcgtatcgac caaagtattg
     4441 cggtgaacta tatcgtgact accacgatga cgtttttatt actaaaaccg gattaccaag
     4501 ggcagtcgat taccgatatt attgctaata acccgacttc ctatattttt gtgattttaa
     4561 gtatcacatt gcctactatt ttcttggtgc aagcaaaagc cctagagttt gccggtatta
     4621 tccgaaccga tgcggcacaa cgtttatcgc tgttcctgcc gattttggcg gcattcacca
     4681 tttttggtga gcaggttacg caaaataaat taattgcact tctgttagct ttcgtggcac
     4741 tcggttgctt attatggaaa ggcaatcagg gaatggaaaa aggcggaaaa attgcgatta
     4801 tcagccttgc tctggtttgg gtaggctatg gcgtgaacga tattttattt aaacagattg
     4861 ccaaatcagg ctctgctttc cctgtcaccc tttcgattgc ctttatcggt gcaggctgtt
     4921 ttatgtttat ctatttgcta cttaaacgca ctcaatggca cgttccaagt gtcttaaccg
     4981 gcttattgct aggcgtgttg aacttcggca atattctgtt ctatattcaa gctcaccaag
     5041 ccatgaaaga tgacccaact ttagtcttca ctggaatgaa cttaggggta atttgcttag
     5101 gcactttcgt tggagcattc ttctttaaag agaaaatcca caaagtgaac tacttaggcg
     5161 tggcgattgc gattgtggcg attatttgct tgttttattg gcggtaaata tactttccaa
     5221 aattaagggc gaacataatg ttcgccctta atttttgagt aatatagtgt aaaatattca
     5281 ataaattcga ccgcttgttg taccgattca tatttcataa aggacaaaaa atgaagctaa
     5341 aagccttatc tacactcatt gcctcttcaa tgctatatag tcagagtttt gctgtaccgc
     5401 cggaaaaaac agctgaagag ccacagccct ttttcaataa aaccgaatct gggtatgatt
     5461 tagtctttaa tgatcaaaac tatcgtttaa ttgaaacgga attaaatggc gagaaaatcc
     5521 aattccgtgc ctttgagcgg attgtgtatg tgaacaatcc gattgagcca gattaccaaa
     5581 caattaatct gtatgtgccg gaagcttact acaataatgg cgaaatcaat ggctaccaag
     5641 cggataccgc cccgatcttc ttgccaaatt cagtgggggg ctatatgccg gcaaaagcgg
     5701 caagttatga taaaaaaaga cgtgacggtt caccaggtac gattttggtg gcgttatcta
     5761 aaggctatgt ggtggcaagt gtgggagcaa gaggacgcac gctacaaaaa gagggaaaat
     5821 acaccggcaa agcaccttct gccattattg attcaaaatc cgccgcccat aaagcgtgtc
     5881 ggttcgagtc cgaccactgg caccactcac tatgtaaaat ttagttttac atagtttgct
     5941 gtaagcattt g
//
LOCUS       DANLZD010000143         5820 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.143, whole genome shotgun sequence.
ACCESSION   DANLZD010000143 DANLZD010000000
VERSION     DANLZD010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5820
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.143"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            74..2221
                     /locus_tag="PXE26_002170"
     CDS             74..2221
                     /locus_tag="PXE26_002170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5594717.1"
                     /translation="MKRLRYSYLALILGSALPLSAYADGYLSNDNIRQFDARFNFFLA
                     NPLPAPIAKADGRGEAIENLVVKYASDYLNDIYLKEDVIRFRRWQWQDLYTSLDLKTK
                     QKPDYLNTYRLQAEAYFINKQYQEALSQLDQILRRNPNDVHAMAMSVVASRVLENPNT
                     EAERLLALYQISPSIAQKVQQYLHFTDTMLAASYGSEPQTTMIPDTIAVFGQSPNPDG
                     TPSKGLLQRLEKTKEMAEKFPNAKIILSGGPVRYIYAEADVMKKWLIENGVDESRLLL
                     DDVARDTPGNAVGIIDFMKEYGGRKVLGIGTILHLPRAMSVLKSYADSIGYELEIDSA
                     GGGSPPNEKNKKGEALYTFVNVARAMGLFTLGDFENLLAKEQAEKEQREALEKAQQNY
                     LEKLVAERDQAVKNAENSANELEVARQALETAKQAHQQAEEELNKELSKTQEQLKQST
                     EALSRLIIKQNNPFSEHYVVQLNLMEQATYDLYRRLAEIEHTQDWNLWLSDSLSKYRL
                     KNRSTEDYHLLHIGLDHQVSHNWSIGGVFGISQGQIENRTHKVKGTSAGIYAGYRPTS
                     GLFWTNFFNYSHFTNQSGVTKRDNNAYSLSSEIGRNIVMSHQWQITPKLQLGWAKAGS
                     ARMFWAGTGLRLGKVIELNAIKLKPYADISYRFRNRHIDTLDSLSDRHRNVISIGIQA
                     VGNRHYFAIEGSMLHGDALKRSYGLHANYHYQW"
     gene            2234..3352
                     /locus_tag="PXE26_002171"
     CDS             2234..3352
                     /locus_tag="PXE26_002171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL5594718.1"
                     /translation="MKKIKTTLSALALSLSLISVNSWAIPADYLSQDNISQYDKAFNF
                     VLAKVLPAPKGKEDGRGAPIEHLVIQYAPDYVDDPYLKEDVLNFRRWYWQAMYASLDQ
                     KVKEKPTYLNTYRLQAEAYFVNKEYREALSQLDQILRQNPRDIHALAMTVLASRVLED
                     TEQETARLSALKQLAPEVAQRMTDFFAFTEQTLAASYGNEPQTAMIPDTIAVFGSTPN
                     KDGTPSPLLLDRLQKTKEMAQKFPQAKIIVSGGAVKTEFAEADVMAKWLSENGIEKDR
                     LLLDPVARDTPGNAVGIIKLMQTYNGKKVLGIGTLQHIPRATAVLKGYAQHIGYPIEM
                     DSVGGGKPATPGKAKIEALYTYVNVARSMGLFELGDFK"
     gene            complement(3413..4675)
                     /gene="rho"
                     /locus_tag="PXE26_002172"
     CDS             complement(3413..4675)
                     /gene="rho"
                     /locus_tag="PXE26_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017492510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HDL5594719.1"
                     /translation="MHLTQLKNTPVSKLVEMGENQMGLENLARLRKQDIVFAILKQHA
                     KSGEDIFGQGVLEILPDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKI
                     RPPKEGERYFALLKVDSVNDDKPEASRSKILFENLTPLHANSRLKMERGNGSKEDLTA
                     RILDLAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNHPECELIVLLIDERPEEVT
                     EMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYN
                     TVTPVSGKILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFE
                     EFKGTGNMELHLSRRIAERRIFPAIDFNRSGTRKDDLLMAADELQKTWMLRKVLNPMD
                     EVDAIEWLIDKLMMAKTNEEFFEIMKRS"
     gene            complement(4861..5808)
                     /gene="cysK"
                     /locus_tag="PXE26_002173"
     CDS             complement(4861..5808)
                     /gene="cysK"
                     /locus_tag="PXE26_002173"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HDL5594720.1"
                     /translation="MTIYADNSYSIGNTPLVRLKNFGNGNIVVKVEGRNPSFSVKCRI
                     GANMVWQAEKDGILTKDKEIVDATSGNTGIALAYVAAARGYKLTLTMPETMSTERKRL
                     LRGLGVNLVLTEGAKGMKGAIAKAEEIAASDPDRYVTLKQFENPANPAIHQQTTGPEI
                     WDATEGKIDVLVAGVGTGGTITGVSRAIKQDKGKQIISVAVEPSESPVITQTLNGEEV
                     KPGPHKIQGIGAGFIPKNLDLSLLDRVEQVSSEEAITTARRLMAEEGILGGISSGAAV
                     AAADRIAKLPEFADKLIVVILPSASERYLSTLLFEGIEA"
BASE COUNT         1703 a         1139 c         1281 g         1697 t
ORIGIN      
        1 tccttaatca actttgttgg ttagatgtaa aaagttataa atacttcttc acccaatata
       61 aggagaaatc ataatgaaac gcttgcgtta ttcttatctt gctttgatat taggttcagc
      121 cttaccttta tcggcttatg ctgacggtta tttaagtaac gataatattc ggcaatttga
      181 tgcccgtttt aattttttcc tcgcaaatcc actacctgcg cctattgcaa aagcagatgg
      241 gcgtggtgaa gcgattgaga atttggtggt gaaatatgca tcagattatc ttaatgatat
      301 ctatcttaaa gaggatgtta ttcgttttcg ccgttggcag tggcaagatc tctatacgtc
      361 attggattta aaaacgaaac aaaagcccga ttatttaaat acttaccgat tacaggcgga
      421 agcgtacttt atcaataagc aataccaaga agcattatct caactggatc aaattctgcg
      481 gcgtaaccct aatgatgttc atgcaatggc aatgagtgtg gttgcaagtc gggtattgga
      541 aaatcctaat actgaagccg agcgtttatt agcgctttat caaatctctc caagtattgc
      601 gcaaaaggtg cagcaatatc tacattttac agacactatg cttgctgcca gctatggtag
      661 tgagcctcaa acaacaatga tccccgacac catagcggta tttgggcaat cgcctaaccc
      721 agacggtact ccaagcaagg gattattgca acgtcttgag aaaaccaaag aaatggcaga
      781 gaaatttccg aatgcaaaaa ttattttaag tggtggacct gttcgttata tctatgcaga
      841 agcggatgta atgaaaaaat ggttgataga gaatggcgtt gatgaaagca gactgttgct
      901 tgatgatgtg gcacgagata ctccgggaaa tgctgtcggt atcattgatt ttatgaagga
      961 atatggaggt agaaaagtat tggggatcgg tacgatctta catttaccga gagcaatgtc
     1021 tgtattgaaa agctatgcgg attccattgg atatgaattg gaaattgatt ctgccggagg
     1081 cggttctcct cctaatgaaa aaaataaaaa aggtgaagct ctttatacat ttgttaatgt
     1141 tgctcgtgca atggggttat ttaccttggg cgattttgag aatttgcttg ccaaagaaca
     1201 agctgaaaaa gaacaaagag aagcgttgga aaaagcacag cagaattatt tagaaaaatt
     1261 ggtagctgag cgagatcaag cagtaaaaaa tgcagaaaat tctgcaaatg agctggaagt
     1321 agccagacag gcgttagaaa cagcaaaaca ggctcatcag caagctgaag aggaattgaa
     1381 taaagaactt agtaaaacgc aagagcagtt aaaacagagt acggaagccc ttagtcgttt
     1441 aataataaag cagaacaatc ctttttccga gcattatgtt gtacagctta atttgatgga
     1501 acaagcaact tatgatctgt accgtaggtt agcagaaata gaacatacac aagattggaa
     1561 tttatggctt tcggatagtc tatccaaata tcgtttaaaa aatcgttcaa ccgaagacta
     1621 tcacttatta catatcgggc tagatcatca ggtttcccat aattggtcta ttggtggagt
     1681 atttggtatc agtcaggggc aaattgagaa taggacgcat aaagtgaaag ggacatctgc
     1741 tggtatttat gctggttatc gtcctacaag tggtctgttt tggacaaatt tttttaatta
     1801 cagtcatttt actaatcaat ctggtgtaac aaaacgagat aataatgcat acagtctgag
     1861 tagtgaaatt ggaagaaata tcgtgatgag tcatcaatgg caaattacgc caaagctgca
     1921 attaggctgg gcaaaagctg gatcagcacg aatgttttgg gctgggacag ggctacgttt
     1981 aggaaaagtg attgaactca atgcaatcaa acttaaacct tatgctgata ttagctatcg
     2041 ttttcgaaat cgtcatattg ataccttaga tagtttatct gatcgtcatc ggaatgtaat
     2101 cagtattggg atacaagcag ttggaaatcg ccattatttt gcaatcgaag gatcaatgtt
     2161 acacggggat gcattgaagc gttcatacgg attacacgca aattatcact atcaatggta
     2221 aataggagcc tctatgaaaa aaatcaaaac aaccctttct gcccttgctt taagcctttc
     2281 tttgataagt gtaaatagct gggcgatacc agctgattat ttgagccaag acaatatcag
     2341 tcaatatgat aaggcgttta actttgtatt agcaaaagta ctgcctgcac caaaaggtaa
     2401 agaagatggt cgaggagcgc cgattgagca tttagttatt caatatgcgc cagactatgt
     2461 tgatgaccct tatctaaaag aggatgtgct gaatttccgc cgttggtatt ggcaagcgat
     2521 gtatgcttcg cttgatcaga aagttaaaga gaagccgacc taccttaaca cttaccgttt
     2581 acaagcagag gcgtatttcg tcaataaaga gtatcgggaa gcactttctc agctcgacca
     2641 aattttgcgc caaaaccccc gtgatattca cgctcttgcg atgacagtat tagcttcaag
     2701 ggtgctagaa gatactgaac aagaaacggc tcgtctttct gcactgaaac agcttgctcc
     2761 cgaagtcgca caacgaatga cagacttttt tgcctttacc gaacaaacgc tggcggcaag
     2821 ctacggtaat gaaccacaga cagcaatgat ccctgatacg attgccgttt ttggttctac
     2881 gccaaacaaa gacggcacac cttcgccgct gttgttagat cgattacaga aaaccaaaga
     2941 gatggcacaa aaatttccgc aagcaaaaat tatcgtcagt ggcggtgctg tgaaaacgga
     3001 atttgctgag gctgatgtga tggcaaaatg gcttagcgaa aatggtattg aaaaagaccg
     3061 tttgctactt gatcctgttg ccagagatac cccgggaaat gcggttggga ttatcaagct
     3121 gatgcaaact tataatggca agaaagtatt aggtatcggt acgttacaac atatccctcg
     3181 tgcaacagcg gttctcaaag gttatgcaca gcacattggt tatccgattg agatggattc
     3241 cgttggtggt ggcaagccgg caacaccggg aaaagccaaa atcgaggcac tttatactta
     3301 tgtaaatgtg gcgagatcaa tggggttgtt tgagttgggg gattttaagt agttacttta
     3361 ttgacagctg ctattgataa aaatcccgcg ttaagcggga tttttttatg ttctacgaac
     3421 gtttcataat ctcgaaaaac tcttcgttag tttttgccat cattaatttg tcgattagcc
     3481 attcgatagc atctacttcg tccattgggt tgaggacttt gcgtaacatc caagtttttt
     3541 ggagttcgtc tgctgccatt aagaggtcat ctttacgagt acctgagcgg ttgaagtcaa
     3601 tagccgggaa gatacggcgt tcagcaatac ggcgtgagag gtgtaattcc atattacccg
     3661 tacctttgaa ctcctcgaaa atcacttcgt ccatttttga tccggtatcc acaagtgcgg
     3721 ttgcgataat ggttaagctg ccaccttctt ccacattacg ggctgcaccg aagaaacgtt
     3781 ttggacgatg taaggcgtta gcgtccacac caccggaaag gattttgccg gaaaccgggg
     3841 taacggtgtt gtaggcacgg gctaaacgag tgatggagtc taataaaatc accacatctt
     3901 ttttatgctc taccgagcgt tttgctttct cgattaccat ctccgcaact tgaacgtggc
     3961 gggttgccgg ttcatcaaag gttgaggcaa ttacttcacc acgtacggtg cgttgcatct
     4021 ctgttacttc ttccggacgc tcatcaatta ataatacgat aagctcacat tcaggatgat
     4081 tatgggtgat gctttgtgca atattttgca gtaacacggt tttaccagct tttggcgggg
     4141 caacaattaa cgctcgctga cctttaccga ttggggcggc taaatctaaa atacgagcgg
     4201 ttaaatcttc ttttgatcca ttgccacgct ccatttttaa gcgagaattg gcgtgcagag
     4261 gggttaagtt ttcaaagaga attttactgc gagaggcttc cggtttgtca tcattaactg
     4321 aatcaacttt cagtagggca aaatagcgtt ctccctcttt tggtgggcga attttacctt
     4381 ctattttatc gccagtttgt aagttaaaac ggcggatttg gcttggagaa acataaatat
     4441 catcagggcc ggctaaatat gagctatctg atgagcggag gaaaccgaag ccgtccggta
     4501 gaatttcaag cacgccttgc ccgaaaatgt cttcaccgct ttttgcgtgt tgtttaagaa
     4561 tagcaaatac gatgtcttgt ttacgtaaac gagccagatt ttctaagccc atttgatttt
     4621 cacccatttc cacaagcttt gaaacagggg tgtttttaag ttgagtaaga tgcataattt
     4681 gaatgtaaaa ttgtgattaa ttaagattgg atttgttgat attgattaga tacggccaac
     4741 cgtaaagatg tggcgaagaa taacgcaata ggagacaaat tgcaaatttt ttataaaaaa
     4801 taaccgcttg tttgcaataa aaatgccgac atcagccggc atttttatat taatttaata
     4861 ttacgcttca atcccttcaa acagtagcgt acttaaataa cgctctgagg ctgaaggcag
     4921 aatcactaca attaatttat cggcaaattc aggtagttta gcgatgcgat ctgcggcagc
     4981 aacggcagca cctgatgaaa taccgcctaa aatgccttct tctgccatta aacggcgtgc
     5041 ggttgtaatc gcttcttcgc ttgaaacttg ttcaacacgg tcaagcagtg ataaatctaa
     5101 gtttttcgga ataaagcctg caccaatgcc ttgaattttg tgcgggcccg gtttgacttc
     5161 ttcaccgttt aaagtttgcg taatgaccgg cgattcactc ggttctaccg ccactgaaat
     5221 aatttgcttg cctttatctt gcttaatagc acgggaaaca ccggtaatag tgccacctgt
     5281 tcctacgcct gccactaata catcaatttt accttcagtt gcatcccaaa tttcaggacc
     5341 ggtagtttgt tggtgaattg ccgggtttgc cgggttttca aactgtttta aggtaacata
     5401 gcgatctggg tcggaagccg cgatttcttc agctttcgca atcgctcctt tcattccttt
     5461 tgccccttcg gttaagacta aatttactcc taagccacgc aataagcgtt tacgctcggt
     5521 actcattgtt tccggcattg tgagcgttaa tttataacca cgagcggctg ctacataagc
     5581 caaggcaatt ccagtgttac cgctggttgc atctacaatt tctttgtctt tggttagaat
     5641 accgtctttc tctgcttgcc acaccatatt cgcaccaata cggcatttca cgctaaaact
     5701 tgggttacgc ccttccactt ttaccacaat attgccgttg ccaaaattct ttaaacgcac
     5761 cagcggggta ttgccgattg agtatgagtt gtctgcatag atagtcatag tgatattcct
//
LOCUS       DANLZD010000144         5795 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.144, whole genome shotgun sequence.
ACCESSION   DANLZD010000144 DANLZD010000000
VERSION     DANLZD010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5795
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.144"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..372)
                     /locus_tag="PXE26_002174"
     CDS             complement(<1..372)
                     /locus_tag="PXE26_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014668079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N-acetylneuraminate-beta-galactosamide-
                     alpha-2, 3-sialyltransferase"
                     /protein_id="HDL5594721.1"
                     /translation="MNLIICCTPLQVLIAEKIIEMHPNERFYGVMLSTVKNAKFDFYQ
                     ARLAQKCEQFFAMQQHSERIQLLKEIIYLKRTFGGKKFNKVFLANINELEIQFLLSAI
                     SFQELNTFDDGTANIVQNSIFY"
     gene            complement(369..1574)
                     /locus_tag="PXE26_002175"
     CDS             complement(369..1574)
                     /locus_tag="PXE26_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase"
                     /protein_id="HDL5594722.1"
                     /translation="MKAVKDSVIYLIGELASKSIPFLLLPYFSRKLGVAGYGELSYYQ
                     TFAALFVIFIGLSQDGAVARYFYFYGKRSLNLVLSTGYLYTLCATLLILLGCWYFQSE
                     IIAYVAIGAMFQSFLNVQLSVRQCQKQALAYTTIQLMSAIFSAVITVAMMEYFKTDLV
                     EKRILAILMSNGLVFLIAYFLYAKRAKTKKFSLARHKTALLYLFGFGIPLILHHSSIF
                     LKGQLDRVFIYHKFSEEDLGLYAMGAQIAMILAIVVQALNKATLPYFYEALKQKKINV
                     SHIHKWALYALFIVPLPAIVMWFIPEELVVWILGSQFVGTKYYIILFLIATMLVVPYL
                     ILVNYLFFYGKNKLISLCSILSTIFYLVALFALTFSKIEYIPFASIIGAISIIPILYI
                     MTAKVGKTV"
     gene            complement(1584..2768)
                     /gene="neuC"
                     /locus_tag="PXE26_002176"
     CDS             complement(1584..2768)
                     /gene="neuC"
                     /locus_tag="PXE26_002176"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HDL5594723.1"
                     /translation="MKNIAYITGSRAEYGIVKRLLQKLAQDPTVNFSLVVTAMHLDPQ
                     YGNTVTVIEQDGFEIAARIPLTLNSENNQTIIHSMAECLDRFGEHFQQHRYDAVIVLG
                     DRYEMLAVATAAAMHNIPLIHLHGGEQTLGNYDEFIRHCITKMSKLHLTSTEEYRQRV
                     IQMGELPENVVNTGSLGAENSLDLVLPTQAELVERLGIPASPYFLVVFHPETLTDVSV
                     LEQIEALLNAFEQFKDKYQFVFIGSNSDTNSEQIYARFKAYTDENQFKFFTSVKPEEY
                     LALIKYSNGLIGNSSSGLIEAPSCGVGTLNIGNRQQGRVRDESVIDVESNEQAIIDGI
                     EKLISADFQHRLPSMKNPYFQDNAMEKAYNAIKIFLADSHHTQPKGFYDVAFSQAVKK
                     SE"
     gene            complement(2769..4028)
                     /locus_tag="PXE26_002177"
     CDS             complement(2769..4028)
                     /locus_tag="PXE26_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase"
                     /protein_id="HDL5594724.1"
                     /translation="MKKIAIITARAGSKGLPNKNVLLANGKPLMAYSIEAAIESGQFE
                     KIIVSTDSQEYIDLFSHYPIEFIKRAEHLASDKASSFVVIEDVLNQYRSVEFDYFMLL
                     QPTSPLRSGEHIKESCEKFEKNFEQFDFLVSVSDAHKPTTLTRMIEEDECLKHFQLDY
                     SNYARQLHHPEYSPNGAIFTAKPEAYLKQKHFYGAKCLAYFMDKDVSIDIDDRQDFEY
                     FYFILQQRNKEKILLETIKRSILMKKENFKEVKEIALIGHSIIEYWDIEHLNGKAVNN
                     LGIAGISTKQYSDLILDEGLISALPKDIILMFGTNDIVYAGWSDEKILADINHLIAQL
                     TAIRGDINLYFLEITPTAFRVDRNNNDIRLLNQYLKDNLAVKWISLDQAFSDKYGKLD
                     LSYSDDGLHLNAKGYEKLTAILEKELN"
     gene            complement(4088..5125)
                     /gene="neuB"
                     /locus_tag="PXE26_002178"
     CDS             complement(4088..5125)
                     /gene="neuB"
                     /locus_tag="PXE26_002178"
                     /EC_number="2.5.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate synthase"
                     /protein_id="HDL5594725.1"
                     /translation="MVNVFIVAEIGCNHNGDPALAKKMVDVAKECGVDAVKFQTFKAD
                     KLISKYAPKAEYQKVTTGTADSQLEMTRKLELPYEEFVKLEAYARSLGLEVFSTPFDF
                     ESIDFLASQQQKVWKIPSGELTNLPYLEKIARLPIEGKTIVISTGMATIEETKASLKV
                     LEDNGVAKKDITILHCNTEYPTPYEDVNLNAFHQLKQEFGDYSLGFSDHSAGYFAGLA
                     AVPYGITFIEKHFTLDKNFEGPDHKASVTPEELKLLCEGIRAVEKSLGSSEKLVTNSE
                     AKNKIVARKSIIAARPIKKGEIFTTENITTKRPGNGISPMFWYDVLGKEAQQDFEEDQ
                     LIQDSRFENQM"
     gene            complement(5125..5769)
                     /locus_tag="PXE26_002179"
     CDS             complement(5125..5769)
                     /locus_tag="PXE26_002179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HDL5594726.1"
                     /translation="MQQKSKREKLILIGAGGYAKSVLDSLDHEQYEFCGLIDNFKPEG
                     SVHLGYPILASTIDCFSKRDNYHYFICIGNNSYRLEKFSKLQKYKCRIINVVDKTALV
                     SKNSTLGIGVFVGKMAIVNSGVTVGDNVIINTKSLVEHGCFIGSHCNISTNTTLNGDV
                     IVEDHAFIGSSSVVNGQLRVGERALVGSGAVVIRNVEPRTVVAGVPAKYIKDIK"
BASE COUNT         1839 a         1193 c          951 g         1812 t
ORIGIN      
        1 atagaaaata ctgttttgta caatattagc tgtgccatca tcaaaggtat tgagttcttg
       61 aaatgaaatg gcacttaaca gaaattgaat ttctaactca ttgatatttg ctaaaaagac
      121 tttattaaac ttcttaccgc caaaagtacg ttttaaataa ataatttctt ttaataattg
      181 aatacgctcg ctatgttgtt gcatcgcaaa aaattgttcg cacttttggg ctaatctagc
      241 ttggtaaaaa tcaaatttcg cgttttttac cgtagaaagc atcaccccat agaatcgctc
      301 attagggtgc atttcaatga ttttttcagc aatcaacact tgcaagggcg tgcaacaaat
      361 aattaaattc atacggtttt tcctactttt gccgtcatta tataaagaat cggaataatg
      421 ctgattgcac caatgatgct ggcaaaagga atatattcaa ttttagaaaa agttaaagca
      481 aatagtgcaa ctaaataaaa aatagtagat aaaatcgagc aaagcgaaat tagcttattt
      541 ttgccataaa aaaacaaata attgactaaa atgaggtaag gcacaaccaa cattgtcgca
      601 attaaaaaga gaataatgta gtattttgtt cctacaaatt ggctacccag aatccatacc
      661 actaattctt ccggaataaa ccacatcaca atagcaggta atggtacaat aaataaggca
      721 tacaacgccc atttgtggat atggctgaca ttaatttttt tctgctttaa ggcttcataa
      781 aaataaggca gtgttgcttt atttaaggct tgaaccacaa tggctagaat catcgcaatt
      841 tgagccccca ttgcatataa acctaaatcc tcttcgctaa atttatggta aataaatact
      901 ctgtctaact gtccttttaa gaaaatactg gaatggtgca aaatcaacgg aataccaaag
      961 ccgaataaat acaataaagc agttttatgg cgggcaaggc taaatttctt cgtttttgct
     1021 cttttagcat acaaaaagta agcgattaga aagactaagc cattactcat caaaatcgct
     1081 aaaatccgct tttccactaa atcggtctta aaatactcca tcattgcaac ggtaataact
     1141 gccgaaaaaa tcgccgacat taattgaatc gttgtataag caagtgcctg tttttgacac
     1201 tgccttacac taagctgtac attcaaaaac gactggaaca tcgccccaat cgctacataa
     1261 gcaataattt cagactggaa ataccagcaa cccaacagga taagcaaagt tgcacaaaga
     1321 gtatataaat accctgtact caagactaaa tttagtgaac gcttaccata aaaatagaaa
     1381 tagcgagcaa ccgcaccgtc ttggctaagc ccgataaaaa ttacaaataa agcagcaaag
     1441 gtttggtagt aggaaagctc cccataacct gccacgccga gtttgcgtga aaagtagggt
     1501 aagagcaaga aaggaattga ctttgacgcc aattccccaa ttaaataaat cacactgtct
     1561 ttaactgctt tcatagttgc aaattattct gattttttga ccgcttgcga gaaagcaaca
     1621 tcataaaatc ctttcggttg agtatggtgg ctgtctgcta agaatatttt gattgcattg
     1681 taagcctttt ccatcgcgtt gtcttgaaaa tatggatttt tcatactcgg taaacggtgt
     1741 tggaaatcgg ctgaaatcaa tttttcgata ccatctatga tagcctgttc attactctct
     1801 acatcaatta cgctctcatc ccgtactcgc ccttgctggc gattaccgat atttagcgta
     1861 ccaacaccac aactcggtgc ttcaatcaag cctgatgagc tattaccaat caacccattt
     1921 gaatatttaa tcaacgctaa atactcttcc ggtttgactg aggtgaaaaa cttaaattga
     1981 ttttcatcgg tgtaagcctt aaaacgtgca taaatttgct ctgaattggt gtctgaattt
     2041 gagccgataa agacgaattg gtatttgtct ttaaactgct caaaagcatt gagtaacgcc
     2101 tcaatttgct ccaacacgga aacatcggtt aaggtttccg ggtggaagac cactaaaaaa
     2161 taaggcgatg ccggaatccc taatctctcg actaattctg cttgggtcgg caacactaaa
     2221 tccaaactat tctccgcccc tagagaacca gtattcacca cattttcggg cagctcgccc
     2281 atttgaatca cacgctgtct atattcttca gttgaagtta aatgcaattt cgacattttg
     2341 gtaatacaat ggcgaataaa ttcatcgtaa ttacctaatg tttgctcacc accgtgcaga
     2401 tgaatcagcg gaatattatg catcgccgca gccgttgcca ccgccaacat ctcgtaacga
     2461 tcgcctagca caatcaccgc atcataacga tgttgctgga aatgttcgcc aaatcgatct
     2521 aaacactctg ccattgaatg aataatggtc tgattatttt cactgtttaa ggtaagcgga
     2581 atacgagctg caatctcaaa gccatcttgc tcaatgaccg tcaccgtatt gccatattgc
     2641 ggatccaaat gcatcgcagt aacaaccaga gagaaattca cagtcggatc ttgtgctaat
     2701 ttttgtaata aacgctttac aatcccgtat tcggcacgag atccggtaat ataggcaata
     2761 tttttcattt agttgagctc tttttccaaa atagcggtta atttttcata accttttgca
     2821 tttaaatgta atccgtcatc gctatagctt aaatccaatt tgccatattt atcgctaaat
     2881 gcctgatcta agctaatcca tttcaccgct aaattatctt taagatattg atttaacaag
     2941 cgaatatcgt tgttattacg atcgactcta aatgcagttg gggtaatttc caagaaatag
     3001 agattaatat ctccacgaat tgctgttaat tgtgcaatta aatgattaat atctgctaga
     3061 attttttcat cactccagcc agcatataca atatcattag taccgaacat taaaataatg
     3121 tctttaggta aagcagaaat taaaccttca tccaaaatca gatcactgta ttgttttgtt
     3181 gaaatacctg caattcctaa attattaact gccttaccgt ttaaatgttc aatatcccaa
     3241 tattcaatga tcgaatgccc gattaaggct atctctttca cttctttaaa gttctctttt
     3301 ttcattaaaa tcgaacgttt aatggtttca agtaagattt tttctttatt gcgttgttgc
     3361 agaataaagt agaagtactc gaaatcttgg cgatcatcaa tatcaataga aacgtcttta
     3421 tccataaaat aggctagaca tttcgcacca tagaagtgtt tttgtttaag ataggcttct
     3481 ggcttagctg taaaaatagc tccattcggt gaatattcag gatgatgcaa ttggcgtgca
     3541 tagttagaat aatccaactg aaaatgcttt aggcactcgt cttcctcaat catacgagtc
     3601 aatgtcgtag gtttatgggc atcagaaaca gatactaaga aatcaaattg ttcgaaattt
     3661 ttctcaaatt tttcacacga ttccttaata tgctctcctg atctcaacgg cgaagttggt
     3721 tgaagtagca taaaatagtc aaactctact gatctatatt gatttaacac atcttcaatc
     3781 acgacaaaag aactcgcctt atcactggct aaatgctcgg cacgtttaat aaattcaatt
     3841 ggataatgtg agaacaaatc aatgtattct tgggaatcag tactaacgat aattttctca
     3901 aattgccccg actcaatcgc agcttcaata gaataggcca ttaacggctt accgttggct
     3961 aataatacat ttttattcgg caagcctttt gaaccggctc gggctgtaat aattgcaatt
     4021 tttttcataa atttgaccgc ttgttaaaca caaaatgatg gagctttcat cccatcacta
     4081 tattatatta catctgattt tcaaaacgag aatcttgaat taattgatct tcttcaaaat
     4141 cctgttgtgc ttctttacct agcacatcat accaaaacat cgggctaatg ccattaccgg
     4201 ggcgtttagt cgtaatattt tcggttgtaa aaatttcgcc ttttttaatt ggacgtgccg
     4261 caataattga ttttcttgcc acaattttat tttttgcttc cgaattagtg actaatttct
     4321 cggaagaacc cagcgatttt tccaccgcac gaatgccttc acacagtaat ttcagctctt
     4381 caggtgtaac cgaagcttta tgatccggac cttcaaagtt tttatctaag gtaaaatgtt
     4441 tttcaatgaa ggtaatgccg taaggtactg ccgccaaccc tgcaaaataa ccggcagagt
     4501 ggtcagaaaa acctaaacta tagtcgccaa actcctgttt tagctgatgg aacgcattta
     4561 aattcacatc ttcataaggt gtcgggtact cggtattaca atgtaaaatc gtaatatctt
     4621 ttttcgctac accgttatct tccaatactt ttaatgaggc ttttgtttct tcaatggttg
     4681 ccataccggt agaaataacg atcgtcttgc cttcaatcgg aagtcgtgca attttttcta
     4741 aatacggcaa attggttaat tcaccagacg gaattttcca cactttttgt tgttggcttg
     4801 ccaagaaatc aatcgactcg aaatcgaatg gcgtagagaa tacctctaac cccaatgaac
     4861 gagcgtaagc ctctaatttc acaaactcct cataaggtaa ctctaatttg cgggtcattt
     4921 ctaattggga atcagcggtg ccggtcgtta ctttttgata ctcggcttta ggggcatatt
     4981 tagagatcaa cttatccgct ttaaaggttt ggaatttcac cgcatcgaca ccacactctt
     5041 tcgctacatc aaccattttc tttgctaacg caggatcgcc gttatggtta caaccgattt
     5101 ctgccacaat aaatacattt accattattt tatatcctta atatattttg ctggaacgcc
     5161 tgctacaact gtgcgaggct ccacatttct aattaccact gcaccggagc caaccaatgc
     5221 tctttcaccc actcttagct gtccgttcac aacagaggaa ctaccaataa aagcatgatc
     5281 ttcgacaatt acatcgccat ttagtgtcgt attggttgaa atattgcaat gactgccgat
     5341 aaaacaacca tgctcaacca gcgatttagt gttaatgatc acattatcgc ctacagttac
     5401 gccactgttt acaattgcca tttttccaac aaacactcca atgcctagag tggaattttt
     5461 ggacaccaat gcggttttat ctaccacatt aattattcta cacttatatt tttgtagctt
     5521 agagaatttt tctaaacggt aactattatt tccaatacaa ataaaatagt gataattatc
     5581 tcgtttagaa aaacaatcaa ttgttgaagc tagaatagga taacctaagt gcacactacc
     5641 ttcaggctta aagttatcga taagtccaca aaattcatat tgttcgtgat caagtgaatc
     5701 taacactgat ttggcatagc caccggcacc gatcaaaatc aatttttctc ttttagactt
     5761 ttgttgcatt gctatcaccc atgatgaatt tcaat
//
LOCUS       DANLZD010000145         5696 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.145, whole genome shotgun sequence.
ACCESSION   DANLZD010000145 DANLZD010000000
VERSION     DANLZD010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5696
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.145"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            30..422
                     /locus_tag="PXE26_002180"
     CDS             30..422
                     /locus_tag="PXE26_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594727.1"
                     /translation="MTDYQKLLNALLNDADEDCFAVYGLRATTDVHQVGDELGNSFVW
                     VDGEKTDEELDGICTMGIQNADEAGLLNAIKNLGRDACKKFDVEFKGFQSYCGQNFIL
                     VKGDSARGGEDKGESIIRNPIVVAVFNS"
     gene            441..656
                     /locus_tag="PXE26_002181"
     CDS             441..656
                     /locus_tag="PXE26_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5594728.1"
                     /translation="MIENPEFGYTPSNLKMLRKHHNLTQTEVANILGVGQRIVMRWET
                     ELSSTAARSDMPYTKWAELLKNLQKNF"
     gene            727..1152
                     /locus_tag="PXE26_002182"
     CDS             727..1152
                     /locus_tag="PXE26_002182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mor transcription activator family protein"
                     /protein_id="HDL5594729.1"
                     /translation="MSEFESVEHYLPETVKEIVGVIGLPATEKLIKAFGGFSFQFSNG
                     KLYFNKLKEVLGQDDAVKLQAYMGACEVYLPRCETALRMLRNQQIYADYCQLTEQGGL
                     SGRLAIMQICPKYSVCDRVAWEAVRYYQRKHTVSQATLF"
     gene            1238..1771
                     /locus_tag="PXE26_002183"
     CDS             1238..1771
                     /locus_tag="PXE26_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HDL5594730.1"
                     /translation="MTEPIKNKATIADFNLAFDRLIGHEGGYVNDPKDPGGETNWGIT
                     IHTARANGYTGSMRAMSRADAKTIYLKAFWQRYNCEQFPPELAFQFLDACVNHGSGNA
                     SRMLQRAVGVADDGIIGKVTLAAIERYSVADVGLLFQAERLEFYTKLKHFDRFGRGWI
                     NRMAGNLRYFAKDTVEE"
     gene            1774..2019
                     /locus_tag="PXE26_002184"
     CDS             1774..2019
                     /locus_tag="PXE26_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2644 domain-containing protein"
                     /protein_id="HDL5594731.1"
                     /translation="MKQFLLDLITNKDGTASTTGFIQFMSWLVLSGILIHAYLYDKPF
                     ISDWWFAYAGICVLGSPATKGVVSALKQKERSREAEE"
     gene            2016..2375
                     /locus_tag="PXE26_002185"
     CDS             2016..2375
                     /locus_tag="PXE26_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2681 domain-containing protein"
                     /protein_id="HDL5594732.1"
                     /translation="MITQQIAGVVGVVSTILAYAFYKSWQLKQERKLTATLKAEKQQQ
                     AVEIQQKNAEVKNAKIQQKHVSETRRIQPSAIDEQLHQHGYFRDDNGLHGVRSDLPEP
                     CGHNGNETPSACTQSDL"
     gene            2390..2545
                     /locus_tag="PXE26_002186"
     CDS             2390..2545
                     /locus_tag="PXE26_002186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594733.1"
                     /translation="MKLIKKLRQRWQQWRFYRRRPDLAELHNVVRAAVAQGNQHPVGR
                     AKRGRYD"
     gene            2538..2795
                     /locus_tag="PXE26_002187"
     CDS             2538..2795
                     /locus_tag="PXE26_002187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594734.1"
                     /translation="MIDEKLFQMLISFVVAPLVAFVGKVIFDRINRNEQTVKELKAEM
                     ESKYQSKELAHEVNRGIKEKLDDILDSLKEVNQKLDKKADK"
     gene            2795..3049
                     /locus_tag="PXE26_002188"
     CDS             2795..3049
                     /locus_tag="PXE26_002188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594735.1"
                     /translation="MSRKKQKQTDSEKLDLILGGLNELNDKVDKQNEEIERLHREIQA
                     TNRLVNEMARKNRRDAVVAGGLGGGIVAVGFELLRLKFGM"
     gene            3057..3557
                     /locus_tag="PXE26_002189"
     CDS             3057..3557
                     /locus_tag="PXE26_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HDL5594736.1"
                     /translation="MAHDVEVQKAVRQAYVFDRLSLEMAAERAGVSFGTARRWKAAAE
                     KNGDNWEKARDVQAMASGGIENIAQGLLAGFLIKYRTLMTELEENTEMPTAAKVEALA
                     ALADSFAKMTASSKKLLPETSAMATAMRAIEMMANIVKTKKPHLLPDFLEMLDELEVQ
                     FKKEFK"
     gene            3557..3703
                     /locus_tag="PXE26_002190"
     CDS             3557..3703
                     /locus_tag="PXE26_002190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594737.1"
                     /translation="MAKKKQTVVHKHYSFRWIVQLACIFGAIKLMLNGTDGWGWLLLI
                     AACM"
     gene            3707..5203
                     /gene="terL"
                     /locus_tag="PXE26_002191"
                     /pseudo
     CDS             3707..5203
                     /gene="terL"
                     /locus_tag="PXE26_002191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248652.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
     gene            5201..5696
                     /locus_tag="PXE26_002192"
                     /pseudo
     CDS             5201..5696
                     /locus_tag="PXE26_002192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251293.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
BASE COUNT         1684 a         1067 c         1434 g         1511 t
ORIGIN      
        1 gcacccatag ccaaacagga gaaattaaaa tgacagatta ccaaaaactt ttaaatgctt
       61 tactaaacga tgccgatgaa gactgcttcg ctgtttatgg tttaagagca actacagatg
      121 tgcatcaagt tggcgatgaa ttaggaaatt cttttgtttg ggtcgatggt gaaaaaacag
      181 atgaagaatt agacggcatt tgtacaatgg gaatccaaaa tgcagatgaa gcaggtttgt
      241 taaatgctat taaaaatcta ggtcgtgatg cttgcaaaaa atttgatgtt gaatttaaag
      301 gtttccagtc atactgtggg caaaacttta tcctagttaa aggcgatagt gcaagaggcg
      361 gagaagataa aggcgagagc attattagaa accctatcgt tgttgctgta tttaatagct
      421 agtttaatgg agggaggtga atgattgaaa acccagagtt tggatacaca ccaagcaact
      481 taaaaatgct aagaaagcac cataacctca cacaaacaga ggtagctaac atattagggg
      541 tcgggcaaag aatagtaatg cggtgggaga cagaactgtc atcaaccgca gctagatcag
      601 atatgccgta cacaaaatgg gctgagcttt taaaaaattt gcaaaaaaat ttttaagtaa
      661 gtattacaga tttgaataac ccccttggat aatggctttc gtggaaatta ttcaagggga
      721 ttttttatgt ctgaatttga aagtgtcgaa cattatttgc cggaaacggt gaaagaaatt
      781 gtgggcgtga ttggtttgcc ggcaactgaa aagctaatca aagcctttgg tggcttttca
      841 ttccaatttt ctaacggaaa actctatttt aataagctca aagaggtatt agggcaagat
      901 gatgcagtga aattacaggc ttatatggga gcttgcgagg tctatttgcc acgttgtgaa
      961 accgcattaa gaatgttgcg taatcagcag atttatgccg attattgtca attaaccgag
     1021 caaggagggc taagtggcag gcttgcgatt atgcaaattt gccctaaata cagcgtgtgt
     1081 gatcgtgttg cgtgggaggc agtacgatat tatcagcgta agcataccgt ttcgcaagct
     1141 accttgtttt aagtgtggaa tcctttcgcc tgctccccgt tgctctaaat cattaaagtc
     1201 tctttaaatc atcattgaat ttaaagaggc tttttttatg actgaaccta tcaaaaacaa
     1261 ggcaactatt gctgacttta atcttgcatt tgaccgtctt atcggacacg agggcggtta
     1321 tgtgaacgac ccgaaagacc ccggtggcga aacgaattgg ggtatcacta tccatactgc
     1381 ccgtgcgaat ggctataccg gctctatgcg tgcaatgagc cgtgcggatg cgaaaactat
     1441 ttacctcaaa gccttttggc aacgttataa ctgtgagcag ttcccgcctg agttggcttt
     1501 tcagttttta gatgcgtgtg taaaccacgg ttcgggcaat gctagccgaa tgttacagcg
     1561 agcggtaggt gtggctgatg acggcattat cggtaaagtg actttggctg cgattgagcg
     1621 ttattcggtt gcggatgtgg gcttgttatt tcaggcagaa cgccttgagt tttacaccaa
     1681 actcaaacac tttgaccgtt ttggtagagg ttggattaac cgaatggcgg gtaatttgcg
     1741 ttattttgcc aaagacacgg tggaggaata atcgtgaagc aatttttact tgatttaatt
     1801 accaataaag acggcacagc cagcaccact ggctttattc agtttatgag ctggttagtg
     1861 ttatcgggca ttttaattca cgcctacctt tacgataagc cgtttatttc cgactggtgg
     1921 tttgcttatg ctggtatttg tgtattgggt agcccagcca caaaaggggt ggtaagtgcg
     1981 ttaaaacaaa aagaacgctc aagggaggct gaagaatgat tactcaacaa attgcaggtg
     2041 tggttggtgt agtaagcaca attttagcct atgcctttta taaaagctgg caattaaagc
     2101 aggagcggaa acttaccgct acattaaagg cggaaaagca gcaacaagcg gtcgaaattc
     2161 aacaaaaaaa tgcagaggtt aaaaatgcca aaattcagca aaaacacgtt agtgaaactc
     2221 gccgtattca gcctagtgcc attgatgagc agttgcacca acacggttac ttccgtgacg
     2281 acaacgggtt gcacggcgtt cggtctgatt tacccgagcc gtgcggacac aatggaaacg
     2341 aaacgccaag tgcttgcaca caatctgacc tatgaggaag tttgccagaa tgaagttaat
     2401 taaaaaactc agacagcgtt ggcaacaatg gcgtttttat cgccgccgtc ctgaccttgc
     2461 agaattgcat aacgtggtgc gtgcggcggt ggcacaaggt aatcaacacc cggtcgggcg
     2521 agccaaaagg gggcgttatg attgatgaaa aactgtttca gatgctgatc tcttttgtag
     2581 ttgctccgtt agtggcgttt gtaggcaagg tcatatttga tcgtatcaac cgcaatgagc
     2641 aaacggtaaa agagctaaaa gcagaaatgg agagcaaata tcaatccaaa gagcttgccc
     2701 acgaagtgaa tagagggatt aaggaaaagc tggacgatat tttagactcg ctcaaagaag
     2761 taaaccaaaa acttgataaa aaggcggata agtaatgagc cgtaaaaaac aaaagcaaac
     2821 cgattcggaa aaattagacc tgattttagg tggattaaat gagctaaacg ataaggtgga
     2881 taaacaaaac gaagaaatcg aacgcttaca ccgtgaaatc caagcgacta atcgtttagt
     2941 gaatgaaatg gcacgtaaaa accgccgtga tgctgtagtt gccggtggct tgggtggtgg
     3001 cattgttgct gtgggttttg agttgttacg cctgaaattt ggaatgtaga gggcgtatgg
     3061 cacacgatgt tgaagtacaa aaagcggttc ggcaagccta tgtgtttgac cgtttaagcc
     3121 tcgaaatggc agcagaacgt gcaggggtat cattcggcac ggcacggcgt tggaaagcgg
     3181 ctgctgaaaa gaacggtgat aactgggaaa aagctcgtga tgtgcaagcg atggcaagcg
     3241 gtggtattga gaatatcgct caaggcttgt tagccggttt tttaattaag taccgcacgt
     3301 tgatgacgga gcttgaggaa aacaccgaaa tgccaaccgc agctaaggtt gaggcattag
     3361 ctgctctggc tgattcgttt gcgaagatga cggcatcgag caagaaacta ttgcctgaaa
     3421 caagtgcaat ggcaaccgct atgcgtgcga ttgagatgat ggcgaatatc gtcaaaacca
     3481 agaaaccgca tttattgcct gactttttag aaatgttaga tgagctagaa gtgcaattca
     3541 aaaaggagtt taagtaatgg ctaagaaaaa acaaactgta gtgcataagc attactcttt
     3601 ccgttggatt gtccaacttg cttgtatttt cggagcaata aaactaatgc tcaacggtac
     3661 agacggttgg ggctggttgt tgcttatcgc agcttgtatg taatttatga aaatcaaaga
     3721 atttgaaaaa gaactggaag aattacggcg acagttacaa caaaatatcg aagcgagttt
     3781 tgagggttgg gacgataaac cacaagccat tagcgaacgc cgtcaaaagg ttttagaccc
     3841 tgttcacggc tttgagtatt ttgtgcaggc ttattttcca cactatgtgc ggtctgaaca
     3901 taaatcacag ttgcatcatt atctctttga gaatttaccg ctttcggtaa gtgatctttc
     3961 taagtcagtc cgccaagcga ttgcagcccc tcgtggcgag gcaaaatcaa cgatttgtac
     4021 gcaattattc ccgctgtggt gtttagtccg tgatttaaaa agatacatca ttattgcgat
     4081 ggacaccaaa gaacaggcat acagtatgct tgaagctatt aaagtggaaa ttgaatctaa
     4141 ccctcgttta agaattgatt tccccgaggt tgcacaaggc aaggtttggc gtgcaggtgt
     4201 cattatgacg gctaaaaaac aaaaagttga agctgtgggg gctgggcaaa aattgcgtgg
     4261 tcgtcgccac ggagcttatc gtccggattt agtagtactt gatgatattg agaatgatga
     4321 aagcgtagaa acacctgcac agcgtaataa attgcataac tgggttttaa aagcagtttt
     4381 aaaacttggt gctgcaggtg aaaagtttga tgttatctat gtcggcacaa ttctacatta
     4441 tgacagtgtg cttagccgta ttttaaatac aaaaggttgg cggcgagttc gttttaaagc
     4501 cattttacgc tttcccggca atatggcgtt atgggacgaa tgggaaaata tatacctctc
     4561 ggaagaaggg gacgatgaca ctatgtctga tctcttttat caacagcata aagcagaaat
     4621 ggataaagga gcgttagtct cttggttagc tcgccctatc ctctacttga tgaaaatccg
     4681 tgctagtgat gggcactcag catttgactc cgagtatcaa aatgaccctg tctcgggtga
     4741 tgatgcgatt tttgccaaca gtatccagta ttggacggaa ctgcctgatg acctgattta
     4801 tttcggggcg ttagacccct caatggggaa agctggggca agccgtgacc catctgcaat
     4861 tttggtcggt ggctatcatc gtgagagtgg caagctctat gttgttgagg cacaaatcaa
     4921 aaaacgattg ccggatttaa ttattgagga cgtgattaga ctgcattcgc aatataactg
     4981 tcaccgctgg tttgtggaga cggtgcaatt tcaggagttt ttgcagacgg aactggtcaa
     5041 gcgttctgcc cagcgtggta agccggtgcc ggcaacggca accaagccga acagtgacaa
     5101 gatgttacgg attgagagct tgcaaccgca tattgccaac ggtttgattt tgttgcaccg
     5161 ctcgcaatct acgcttgaaa gccagcttcg ccattttccg aaaggcgaag aagcacaggc
     5221 gattgtggct cgtttagtta atgtgattaa tgcggcgagt tatagccctg tggtggcaag
     5281 tgtggaaagt gaaacgacac ttaaactgac ctcaaaagca aaaggcgaaa tcagcaatga
     5341 aatcacgctt gcaacacgca atacagcaac aggtttaacc cttgaggctc gtgcgtttga
     5401 taacggtcag cgtaatgccc taattgctcc ggcgttggcg agtgttgccg gtacgcatta
     5461 taacgtgatt atttcgccgt tttcagatga tgaaaatgcc cttgccttgc gtagccattt
     5521 agaatcggtt tctgccccga ttgaagataa accggctatt ggtgtaatgg gctggcgtgg
     5581 cacttatgcc accggcacaa ccttaaccgc aagccttaac agtgagcgaa ttattgtagg
     5641 ctggtataag ggagcaaccg aatcaaatgc aatgattgcg gcagggcttg gtgcgg
//
LOCUS       DANLZD010000146         5646 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.146, whole genome shotgun sequence.
ACCESSION   DANLZD010000146 DANLZD010000000
VERSION     DANLZD010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5646
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.146"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            51..740
                     /locus_tag="PXE26_002193"
     CDS             51..740
                     /locus_tag="PXE26_002193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HDL5594738.1"
                     /translation="MSTLSRDSILSQIQNGLIASCQPVDDGPMDKPEIVAAMAAASVI
                     GGAKGIRIEGVDNLKAARAAVNVPIIGIVKRDLPDSPVRITPFLEDIDALAEAGADII
                     AVDGTFRTRPVSIEEAVKRIHEKGCLAMADCSTLEEGLHCQQLGFDIVGSTMSGYTGG
                     EMPDEPDYQLVKDLKAAGCNVMAEGRYNTPELAKTAIEIGADYVTVGSALTRLEHIVS
                     WFADSVKSAQK"
     gene            750..1652
                     /locus_tag="PXE26_002194"
     CDS             750..1652
                     /locus_tag="PXE26_002194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine kinase"
                     /protein_id="HDL5594739.1"
                     /translation="MRCLAIDIGGTKIATAIVQHNQVSQRQQIQTPTDKPQADQAGSL
                     HQAIGEIMQHYQGQFDFVAVASTGIINKGVLTALNPKNLGGLAEFPLKQSIEKHTDKP
                     IALLNDVQAAVCAEYLNEDQQAVKNFVFITVSTGVGGGIILNGELQIGSNGIAGHIGH
                     TLADPNGPLCGCGRVGCVEAVAAGRAIEAVSSQWEKPCSPKEVFERFRQGNPQAVELV
                     QKSAKAIANLIADLKISLDIQKVVLGGSVGLAEGYLPQVSNYLAEMPSVYHCVLENAL
                     SGQDAGLIGAAWWAENQLNQGFTL"
     gene            1677..2555
                     /gene="nanA"
                     /locus_tag="PXE26_002195"
     CDS             1677..2555
                     /gene="nanA"
                     /locus_tag="PXE26_002195"
                     /EC_number="4.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005718701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate lyase"
                     /protein_id="HDL5594740.1"
                     /translation="MKNLKGIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYV
                     GGSTGENFMLSTEEKKEIFRIAKDEAKDEIALIAQVGSVNLKEAVELGKYATELGYDS
                     LSAVTPFYYKFSFPEIKNFYETIIRETGNKMIVYSIPFLTGVNIGVSQFAELFENEKI
                     IGVKFTAGDFYLLERLRKAFPNHLIYAGFDEMMLPATVLGVDGAIGSTFNVNGIRARQ
                     IFELAQQGKIKEAFEIQNVTNDLIEGILGNGLYQTIKGLLELEGVQAGYCREPMTKEQ
                     TPAQKEVTKQLKAKFL"
     gene            complement(2616..2822)
                     /locus_tag="PXE26_002196"
     CDS             complement(2616..2822)
                     /locus_tag="PXE26_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594741.1"
                     /translation="MDNKQTNGFNDIIVKADITQNIWSTGFYDIGRELKSENTRQEKV
                     RLKYNGDTLHRGRKSRMASLIASR"
     gene            complement(2780..3418)
                     /locus_tag="PXE26_002197"
     CDS             complement(2780..3418)
                     /locus_tag="PXE26_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594742.1"
                     /translation="MKKILLLVLLLTLATQADEGNNTQVCAEQQHQIIAHYFKISQEK
                     LSARTLASACKTAPNNSTETLVSYAVIEPKYSKENYQNDENTPKWTLFVARVNDNAIL
                     QSWEQDMEIDASIDVNADSLKIDTARYILNDKVRAFGVRFNNAARGPSAPEYSANDHL
                     MLFVPEKEKLKLVFDYPMTFWSILDDKETKTETQTWYCKWITNRPTASMILL"
     gene            complement(3660..4379)
                     /locus_tag="PXE26_002198"
     CDS             complement(3660..4379)
                     /locus_tag="PXE26_002198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5594743.1"
                     /translation="MSKPNIYDESFSERMKWIAKNSFKDNYSEFARAVGVAQASLSRW
                     VKGEADPSRSNLVKIAEVSNVSLEWLATGKESKPQSENTSIVAREFERLEKMADDIVS
                     MINSFRTINVSAGFGSFNEGVTKPDGQEPYADSLLQSLGVKAHNCGVFWANGTSMHPT
                     IADSDQMLVDFSKREPRGDDKIYLVQNGESVWVKRIRKEWDYIELISDNESYRPIQIT
                     AEEAQNLQIIGQVVHIGHSLV"
     gene            4556..4834
                     /locus_tag="PXE26_002199"
     CDS             4556..4834
                     /locus_tag="PXE26_002199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5594744.1"
                     /translation="MSVLNDVKKTAQRDWHKADILAELRKKGWSLRSLAKAGNVSHNT
                     LKSVLDKPYPKMERLVANAIGVAPEVIWAGRTAERIERNRRPTLTNKF"
     gene            4879..>5646
                     /locus_tag="PXE26_002200"
     CDS             4879..>5646
                     /locus_tag="PXE26_002200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5594745.1"
                     /translation="MSELSLKTHYSVAELLSFKLSSLPSAHKNVLEKAIRENWQSQKR
                     KGRGGGVEYELISLPTEVQQEIRTKLLKLLPAEISKGELSVVRQNIDLEQITDKQLST
                     ADARIMVVRWFLMQEVQLGLSRTKTLDQVIAAVASSEIPAEICKAIMAGNSKAGGKLK
                     LSKRTLHSWVLAYEAGENSAERLKQMIPLKTQKRAVPERCGWLQAFLPFYQTFSNVAL
                     TQAYAQFAMQYEGEDLPTESQVRYALKQLPDYVVQQGR"
BASE COUNT         1685 a         1147 c         1238 g         1576 t
ORIGIN      
        1 aacaaaatct agtccattga ctaccttttg aacataaaaa aggaactgtt atgtcaacac
       61 tatctcgtga ttctatttta agtcaaattc aaaacgggct gattgcctcc tgccaaccgg
      121 ttgatgacgg ccccatggat aaacctgaaa ttgtcgccgc aatggcagca gcctctgtga
      181 ttggtggtgc taaaggcatt cgcattgaag gtgtcgataa tttaaaagcc gctcgtgcgg
      241 cagtgaatgt gccgattatc ggcattgtaa aacgtgattt gccagattcc cctgtgcgta
      301 ttacgccatt tttagaagat attgatgcct tagccgaagc cggtgccgat attattgcgg
      361 tggacggcac attccgcacc cgcccggtca gcattgaaga ggcggtaaaa cgcattcacg
      421 aaaaaggttg cttggcaatg gcggattgct ccacccttga agaaggttta cattgccaac
      481 aattaggctt tgatattgtg ggtagtacaa tgtctggcta caccggtggc gaaatgcctg
      541 atgagccgga ctatcaatta gtgaaagatt taaaagctgc cggctgtaat gttatggcgg
      601 aaggtcgcta caacacgcct gaactggcaa aaacggcgat tgaaatcggg gcggattacg
      661 ttaccgttgg atcggcattg acccgcttag agcatattgt gagctggttt gccgactctg
      721 taaaatcggc tcaaaaatag gagctgctta tgcgttgttt agcaatagac atcggtggca
      781 cgaaaattgc cacggcaatt gtgcaacaca atcaagtgtc acaacgccaa caaattcaga
      841 ccccgactga taaaccacaa gctgatcagg caggcagttt gcatcaagcg attggtgaga
      901 taatgcaaca ttatcaaggg caatttgatt ttgtggcagt tgcctcaaca ggcattatca
      961 ataaaggggt gcttaccgca ttaaatccta aaaatttagg cggattggca gaatttccgt
     1021 tgaaacaaag cattgaaaaa cataccgata agccgattgc attattaaat gacgtgcaag
     1081 cggcggtgtg tgccgaatat ttaaatgaag accaacaagc ggtcaaaaat tttgtattta
     1141 ttaccgtttc caccggcgta ggcggcggca ttattttaaa cggcgaactg caaatcggca
     1201 gtaacggcat tgcaggacat atcgggcata ctctagccga tccgaacggg cctctctgtg
     1261 gttgtggacg agtcggctgt gtcgaagcag tcgcagcagg gcgtgcaata gaggcagttt
     1321 ccagccaatg ggaaaagcct tgttcaccga aagaggtgtt cgagcgattc cgccaaggca
     1381 acccacaagc ggtcgaatta gtacaaaaat ctgcaaaagc gattgctaat ttaattgcag
     1441 atttaaaaat cagtttagat atacaaaaag tggtgttagg tggcagtgtg ggcttagcgg
     1501 aagggtattt accgcaggtg tccaactatt tagctgaaat gccgagcgta tatcattgcg
     1561 tattggaaaa tgctctatcc gggcaagatg ccggcttaat cggtgcggct tggtgggcgg
     1621 aaaaccaact taatcaaggt tttactcttt aacaaattct aactccggag atccaaatga
     1681 aaaacttaaa aggtattttt agtgcgttac tcgtctcttt caacgaagac ggcaccatca
     1741 acgaaaaagg cttacgccaa attatccgcc acaacatcga caaaatgaaa gtggacggtt
     1801 tatatgtcgg cggttcaacc ggtgaaaact ttatgctttc taccgaagag aaaaaagaaa
     1861 ttttccgcat tgccaaagac gaagcgaaag atgaaatcgc ccttatcgcc caagtcggta
     1921 gcgtaaactt aaaagaggcg gtagaactgg gtaaatatgc cacagaatta ggctacgaca
     1981 gcttatctgc ggtcacaccg ttctactaca aattcagctt cccggaaatc aaaaatttct
     2041 acgaaaccat tattcgtgaa accggcaaca aaatgattgt ttactccatt ccgttcttaa
     2101 ccggcgtaaa catcggtgtg agccaattcg ctgaattatt tgaaaacgaa aaaatcatcg
     2161 gtgtaaaatt cactgccggc gatttctacc tgttagagcg tttacgcaaa gcgttcccga
     2221 accacttaat ctacgcaggt ttcgatgaaa tgatgctacc ggcaacggta ttaggtgtgg
     2281 acggtgcaat cggctcaacc ttcaacgtaa acggtattcg tgcaagacaa atctttgaat
     2341 tagcccaaca aggcaaaatc aaagaagcat ttgaaatcca aaatgtaacc aacgatttaa
     2401 tcgaaggcat tttaggcaac ggtttatacc aaaccatcaa aggcttattg gagttagaag
     2461 gtgtgcaagc aggttactgc cgtgagccga tgacgaaaga acaaactccg gcacaaaaag
     2521 aagtgaccaa acagttaaaa gctaaattct tgtaatttaa gttgcaaaag gctaaacgaa
     2581 aatcaccgct tgtagtaaca agcggtgatt ttttctcaac gacttgcaat taatgaagcc
     2641 attctgcttt ttctaccacg gtgtaacgtg tcaccattat attttaatcg cactttttct
     2701 tggcgagtat tttctgattt caactctcta cctatatcat aaaaccctgt actccagata
     2761 ttttgagtaa tatccgcttt tacaataata tcattgaagc cgttggtctg tttgttatcc
     2821 atttgcaata ccaagtttgt gtttccgttt tggtttcttt atcatctaaa atagaccaaa
     2881 aagtcatcgg gtaatcaaaa acaagtttta acttttcttt ttccggcaca aataacatca
     2941 aatgatcatt tgcagaatac tcaggagcac ttggaccacg agcagcatta ttaaacctca
     3001 cgccgaaagc tcttactttg tcgtttagaa tataacgggc ggtatcaatt ttaagactat
     3061 ctgcattcac atcgatagag gcatcgatct ccatatcctg ctcccacgat tgcaatatcg
     3121 cattatcatt cacacgagca acaaaaagcg tccacttagg tgtgttttcg tcgttttgat
     3181 aattttcttt gctgtattta ggctctatta ccgcataact cactaaggtt tccgttgaat
     3241 tgttaggagc tgttttacag gcagaagcta aagtacgagc agaaagtttc tcttgagaaa
     3301 tcttaaagta atgagcaata atttgatgtt gttgctcagc acaaacctgt gtgttattac
     3361 cttcatctgc ttgagttgca agcgtaagta aaagaactaa gaggagtatc tttttcatat
     3421 agatttatcc gtatagaaag ataactcatt ctatggggta ctgactcttt ttgcatagag
     3481 agaaagaaaa aaatttggtc ggaaaaataa cggcgagcct agcgaaaaca agggttcgcc
     3541 gtaattttat gggggaagct atgtaaaaaa caaaatgagc aggattagaa aaaaatgagc
     3601 agtttttgcg atattttttg cataggtttg atcggtttta aaactatttt aaatctgttt
     3661 taaactaaag agtgtccgat gtggactacc tgcccgatga tttggaggtt ttgagcttct
     3721 tcggcggtaa tctgtattgg gcggtaggac tcgttatcgc taattaattc aatatagtcc
     3781 cattcttttc taatccgttt aacccatacg ctttccccat tctgcacaag ataaatctta
     3841 tcatcaccac gaggctctcg tttgctgaaa tctaccagca tttggtcact gtctgcaatg
     3901 gtagggtgca ttgatgttcc atttgcccaa aacacgccgc agttgtgggc ttttacgccg
     3961 aggctttgca gcaggctgtc ggcgtaaggt tcttgcccgt ctggcttcgt tacgccctcg
     4021 ttaaagctgc caaagcctgc tgaaacgttg attgttctga agctgttaat cattgaaaca
     4081 atatcatcag ccattttttc tagtcgctca aactctcttg ccacaatact ggtattctct
     4141 gattgtggtt tgctttcctt acctgttgcc agccattcaa ggctcacatt tgacacctct
     4201 gctattttta caagatttga acgagatgga tctgcctctc cttttaccca cctagatagt
     4261 gatgcttggg ctacccccac tgctcttgca aactcactgt aattgtcctt aaagctattt
     4321 tttgcaatcc atttcattct ttctgagaag ctctcatcgt aaatgtttgg tttactcatc
     4381 ttttacgttt ccattaataa agttttactc gtaaaacata ctcataaacc attgattttt
     4441 aagttattta tgaataaagc aaaaatattt tagatgtttt tatgttttac ggttgatttg
     4501 tttaaagttt tacggttaaa tacacgcatc aaatagataa aaagaggtgt atcgaatgag
     4561 tgtattaaac gatgttaaaa aaaccgcaca gagagattgg cataaagccg atattcttgc
     4621 ggaacttcgt aaaaaaggtt ggtcacttcg ttctttggct aaagcaggca atgttagcca
     4681 taacacgctg aagtctgttt tagacaagcc ttaccccaaa atggaacgct tagttgcaaa
     4741 tgccataggg gttgcccctg aagtgatttg ggctgggcga acagcagaac gcattgaacg
     4801 taatcggcga ccaactttaa ctaataagtt ttaatcataa atgatcttta acgtaaaaga
     4861 tataggagaa gaacatttat gagcgaatta agtttaaaaa cgcactattc agtggctgaa
     4921 ttgttaagtt ttaagttatc tagcctacca agtgctcata aaaatgtgct tgagaaagca
     4981 ataagggaaa actggcaatc tcaaaaacgc aaaggcagag gcggcggggt tgaatatgaa
     5041 ttaatcagtt tacccaccga agtccaacag gaaatccgca ccaagttact caaacttctt
     5101 cctgctgaaa tcagcaaagg cgaattgagt gtagtgcgac aaaacattga tttggagcag
     5161 ataaccgata aacaactttc tacggcagat gctcgcatta tggtggtgcg gtggttcttg
     5221 atgcaggaag tgcagttggg gctaagccgc acaaaaacgc tagaccaagt cattgcagcg
     5281 gtggcaagca gtgaaattcc tgctgaaatt tgcaaagcga ttatggcggg caatagtaaa
     5341 gccggtggaa agttaaagct atctaaacgc accttgcata gttgggtgct ggcgtatgag
     5401 gcaggcgaaa attcagcgga acggttaaaa cagatgatac cgctgaaaac acaaaaacgt
     5461 gccgtgcccg agcggtgtgg ttggttgcaa gcctttctgc cgttttatca aacctttagc
     5521 aatgtggcac tcacacaggc ttatgctcaa tttgcaatgc agtatgaggg cgaagattta
     5581 cctacagaga gccaagttcg gtatgccttg aagcagttgc ccgattatgt ggtgcaacaa
     5641 gggcgg
//
LOCUS       DANLZD010000147         5643 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.147, whole genome shotgun sequence.
ACCESSION   DANLZD010000147 DANLZD010000000
VERSION     DANLZD010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5643
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.147"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(41..577)
                     /gene="hpt"
                     /locus_tag="PXE26_002201"
     CDS             complement(41..577)
                     /gene="hpt"
                     /locus_tag="PXE26_002201"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HDL5594746.1"
                     /translation="MEKHHIETLHSKEEVLNRINELAKEINQHYHQKQCQNLVVVGLL
                     RGSFMFMADLVRKLELPVEVDFLTASSYGSSTESSRDVKILKDLDGEIQGKDVLIVED
                     IIDTGFTLSKVGEILKLREPNSLAICTLLDKPCRREVDVPVKWVGFEIPDEFVVGYGI
                     DYAQKYRHLDYIAKVVIE"
     gene            complement(616..1965)
                     /gene="pmbA"
                     /locus_tag="PXE26_002202"
     CDS             complement(616..1965)
                     /gene="pmbA"
                     /locus_tag="PXE26_002202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HDL5594747.1"
                     /translation="MSITDKQTLLQQEQELRQAVEFALNFAKQAGAEAEVGVTKVAGL
                     SVSSRLEQVENIEFNNDGSLGISVYLGKRKGNASTSDLQPESIQKTVEAALAIAKYTS
                     EDACTGLADKELLAFEAEDLELYHQADISVDQAVELAIEAEHYALNADEKIVNSDGAT
                     FNSHSGVRVYGNTHGMLQSYLSSRYSLSCSVISAYEDQLERDYEYTIFREFDKLQAPK
                     WVGEQAAIKAVDRLNPQRIKTGEMSVIFYNDVATGLVGHLAGAISGGALYRKSSFLLD
                     KLGEQILPEWFAISERPHLLRQLASSAFDSEGVITQNREIITDGVLQTYLMTSYSGRK
                     MGLKSTGHAGGIHNWLVKPNRQGGLNTLLKEMGTGLLVTEMLGSAINSVTGEYSRGAA
                     GFWVENGEIQYPVAEITIAGQLQDMYKNLVAVGDDIEHRSNIQTGSILLEKMMVSGE"
     gene            2064..2594
                     /locus_tag="PXE26_002203"
     CDS             2064..2594
                     /locus_tag="PXE26_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein"
                     /protein_id="HDL5594748.1"
                     /translation="MAKKRSKNEIDWTDEEEEIIWVSKSEIKRDSEHLKKIGAELIEL
                     TPQNLEKIPLDDDLKEAIRQAQGFKMEARRRQIQFIGKLLRNRDQEPIQEALDKVKNR
                     HNQQQALLHKLELVRNQLIAMGDASLDNLLTEYPQLDRQHLRNLIRGAIKEREANKPA
                     KNYREIYQYLKTEIVE"
     gene            2600..2971
                     /locus_tag="PXE26_002204"
     CDS             2600..2971
                     /locus_tag="PXE26_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB2 family protein"
                     /protein_id="HDL5594749.1"
                     /translation="MEYLSTILKAHIGLAYISLILLLTRGFLSSKMVDWRQYKILRIA
                     PHAVDTFLLITGIAAVAIFLAYDFFTLAQFSWLLPKLLFLVLYIVFATKAFKKGQPFS
                     LKFYLLAVVSFLLMMLTATFH"
     gene            2984..3697
                     /locus_tag="PXE26_002205"
     CDS             2984..3697
                     /locus_tag="PXE26_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HDL5594750.1"
                     /translation="MIGPFVNAGAIILGGVLGACLGSHLPERIRTTLPLVFGLCCFGL
                     GMMLTASVKYMSAVALALILGTIIGELIYLENRIGKVAGLARGLIDRLFPPVHSLSQE
                     EFLEKFIALLVLFCVSGTGIFGAIKEGMTGDPSILYIKSILDFFTAMIFAASLGYAIA
                     AIAVPLIIVQGILILLATVIMPLTTANMMADFSATGGLLLFATGFRICGIKNFPVANM
                     LPALLLAMPMSYFWEWLVH"
     gene            3700..4263
                     /locus_tag="PXE26_002206"
     CDS             3700..4263
                     /locus_tag="PXE26_002206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HDL5594751.1"
                     /translation="MKKRIIVGISGASGFQYGYKVLELLKPFSEIETHLVISKGAELT
                     RTLETDYTREALHDLADQIHSLNNVGASIASGSFKTEGMVIAPCSMRTLAAIANGLSD
                     NLLTRAADVVLKERRKLVLMVREAPLNLAHIDNMRKVTEMGGIIFPPIPAFYQKPTSL
                     DEMVTHSVSHALSLLDIDIPNTPHWGE"
     gene            4326..4766
                     /locus_tag="PXE26_002207"
     CDS             4326..4766
                     /locus_tag="PXE26_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HDL5594752.1"
                     /translation="MHNPIPTHILDFIQTNHVVNIAAHTEQDFWAANCFYAFDQENVR
                     LIILTAKKTRHAGLMLENPHIVGTICGQIEKINEIEGVQFSATAECLEDKQAEKAALQ
                     IYYQKHPLARLKPSDVWVLSFNTIKHTGNKLMFAKKTIWERNII"
     gene            complement(4770..5633)
                     /locus_tag="PXE26_002208"
     CDS             complement(4770..5633)
                     /locus_tag="PXE26_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005758520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5594753.1"
                     /translation="MLIDEANQIKGFSHLYRLRSDLMLKYTEISVTETVEQEPAEFEA
                     GLRLVILLSGRSEIDFNSEVFELDASLKPQAAFLPLNRAEMGRKIFRKGQLQKELVIF
                     LYPKWLIESQLNLASYHHFKQHLKAHQIILTQSMLKLIHDIVSEQEMQPFGLLEKEGN
                     LLALLASAFSQLTQAPRLKKDRVQQLTELLESGKFDGWSLKQIAIYFHTNVTTLQNEF
                     QHYHKTSIFAYLRRSKLEQAYKLLLQGQSITQAAEFAGYANSENFSTAFKRTFGITPS
                     QIKRDKAKGII"
BASE COUNT         1626 a         1192 c         1061 g         1764 t
ORIGIN      
        1 tgtaattagt cgtgaaaatc taagtagtga ttgagttttt ttattcaatc actactttag
       61 caatataatc taaatgacga tatttttggg cataatcaat cccataaccc accacaaatt
      121 catcggggat ctcaaatccc acccatttta cgggcacatc aacttcgcgg cggcaaggtt
      181 tatctaataa agtacaaata gcaagtgaat ttggctcacg taacttgaga atctccccta
      241 ccttgcttaa ggtgaagcca gtatcaataa tatcttctac aatcaataca tctttacctt
      301 gaatttcgcc atctaaatct tttagaattt tgacatcacg gctggattcc gtgctgctgc
      361 catagcttga tgcggttaga aaatccactt ctacaggtaa ctctagcttt cttactaaat
      421 ctgccataaa cataaacgag cctcgcaata aaccaaccac tacaaggttt tggcactgtt
      481 tttggtgata gtgttgattg atttcttttg ctaattcatt gattcggttt aatacttctt
      541 cttttgaatg tagcgtttcg atatgatgtt tttccattga tttctccaaa taaaattgat
      601 tacaagcggc cgtttttact cgcctgaaac catcattttt tctaataaga ttgaacctgt
      661 ttggatattt gagcggtgtt caatatcatc gcctaccgcc actaaatttt tatacatatc
      721 ttgcagttgc cctgcaatgg taatttccgc tacagggtat tgaatttcac cgttttctac
      781 ccaaaatcct gctgcacctc gagagtattc ccctgttacg ctattaatcg cagaacctag
      841 catttccgtt actaataatc ctgttcccat ttccttaagt aacgtattta aaccaccttg
      901 acgatttggt ttaactaacc agttatgaat accacctgcg tgtcctgtac tttttaaccc
      961 cattttacgc cctgaatagc tagtcattaa atacgtttgt agcacgccat cagtaataat
     1021 ttcacggttt tgggtaatta caccttcact atcaaacgca gaagaggcta attgacgcaa
     1081 caaatgcgga cgctctgaaa tcgcaaacca ttcaggcaga atctgttcgc ctaatttatc
     1141 taataagaaa cttgatttgc ggtataatgc accgccacta atagctccgg ccaaatgccc
     1201 cactaaaccg gttgccacat cgttatagaa aatcacagac atttcgccgg tcttaattcg
     1261 ttgcggattc aatctatcta ccgctttaat tgcagcttgc tcccctaccc atttcggtgc
     1321 ttgtaattta tcaaactcac ggaaaatggt gtattcataa tcacgctcaa gctgatcttc
     1381 ataagctgaa atcacgctac aagagagtga atatcggctc gacaggtaac tctgcaacat
     1441 tccgtgcgta ttgccataaa cacgcacgcc actgtgagaa ttgaaagttg ccccgtcact
     1501 attcacaatt ttttcgtctg catttaaggc ataatgctcc gcttcaatcg ccaattcgac
     1561 tgcttgatca actgaaatat ccgcttggtg gtacaattcc aaatcttctg cctcaaaggc
     1621 aagcaattct ttatcagcaa gcccggtaca agcatcttct gaggtatatt ttgcaatcgc
     1681 aagagctgct tcaaccgttt tttgaatcga ctctggctga agatcggagg tggaagcatt
     1741 acctttgcgt ttgcctaaat aaaccgaaat accgagagaa ccatcgttat tgaactcgat
     1801 gttttcaact tgctctaaac ggcttgaaac cgaaagcccg gcaactttag tcacgcctac
     1861 ttccgcctct gccccagcct gttttgcaaa atttaaggca aattcgaccg cttgtcgtag
     1921 ctcctgttct tgttgtaaca aggtttgttt atctgtaatt gacattttgt tccattgatt
     1981 gattgcattg atgaatatat tctaactcaa atttctgtta gaatacggca ttttttagag
     2041 tttatgtaat gaaaggataa agaatggcta aaaaacggag caaaaacgaa attgactgga
     2101 cagatgagga agaagaaatc atctgggtca gcaaaagtga gataaaacga gattctgaac
     2161 acttaaaaaa aattggggct gaattgatcg aattgacccc acaaaatttg gaaaaaattc
     2221 cactagacga tgatttaaaa gaggcaattc gccaagctca aggctttaaa atggaggctc
     2281 gccgccgtca aattcaattt atcggcaaat tattacgcaa ccgtgaccag gagccgattc
     2341 aagaagcctt agataaagtg aaaaatcgcc ataatcagca acaagcccta ttacataaat
     2401 tggaattagt gcgtaatcaa ctgattgcaa tgggcgatgc atcattagat aatttattga
     2461 cggaatatcc tcaattagac cgccaacatt tgcgtaattt aattcgtggg gcaattaaag
     2521 agcgtgaagc caataaaccg gcaaaaaatt accgtgaaat ttatcaatat ttaaaaactg
     2581 aaatcgtgga gtgattatta tggagtacct atcaaccatt cttaaagctc atatcggctt
     2641 agcttatatt agtttaattt tattattaac ccgtggattt ttatcgtcaa agatggtgga
     2701 ttggcgacaa tataaaattt tgcgcattgc cccacacgca gttgatacct tcttacttat
     2761 caccggtatt gctgctgtcg ctattttctt agcttatgat tttttcacct tagcacaatt
     2821 cagttggttg ctaccaaagt tactcttctt agtactttat attgtatttg cgacaaaagc
     2881 gttcaaaaaa ggacaaccgt tttcgctcaa attttatctg ttagccgtag tctcattctt
     2941 attaatgatg ctaactgcca cttttcacta aataagggaa actatgatcg ggccttttgt
     3001 gaatgccggt gcaattattt tagggggcgt gctgggtgct tgtttaggga gtcacctgcc
     3061 tgaacgtatt cgcactacgt tgccgctggt attcggctta tgctgtttcg gcttaggtat
     3121 gatgctgact gcctcagtaa aatatatgtc tgcggttgcc ttagcattga ttttaggcac
     3181 gatcatcggt gaactgattt atttagaaaa cagaatcggt aaagttgccg gtttagctcg
     3241 tggtttaatt gaccgcctat tcccaccggt gcatagtctt tcccaagaag agtttttaga
     3301 gaaatttatt gctctgcttg tactgttttg tgtgagcggt accggcattt ttggtgcaat
     3361 aaaggaagga atgacaggcg atccaagtat tctttacatt aaatcgattc tagatttctt
     3421 caccgcaatg attttcgctg cttcgttagg ctatgccatt gcggcgattg cagtgccgtt
     3481 gattattgtg caagggattt taattctact ggcaaccgtg attatgcctt taaccactgc
     3541 caatatgatg gcagatttct ccgcaaccgg cggtttactg ctatttgcaa ccggctttcg
     3601 catttgtgga attaaaaact ttccggtcgc aaatatgcta ccagcactac tccttgcgat
     3661 gccgatgtct tatttctggg aatggttggt acattaatga tgaaaaaacg tattattgtc
     3721 ggcattagtg gggcaagtgg ttttcaatat ggctataaag tgcttgaact gctgaaaccg
     3781 ttttcagaaa ttgaaaccca ccttgtaatc agcaaaggag ctgaactcac tcgtactctc
     3841 gaaacggatt atacccgaga agctcttcat gatttagctg atcaaataca ttcgctaaac
     3901 aatgtcggag caagcattgc cagtggttca tttaaaaccg aaggtatggt catcgccccg
     3961 tgttctatgc gaacccttgc cgctattgcc aacggtttga gcgataattt gctgacccgt
     4021 gcggcagatg tggtgttgaa agaacggcgt aaattggtat taatggtgag agaagctccg
     4081 ctcaaccttg ctcatattga caatatgcga aaagtcacag aaatgggcgg cattattttc
     4141 ccacccattc cggcgtttta ccaaaagcca accagccttg acgagatggt cacccacagc
     4201 gtaagccatg ccctttccct gttggatatt gacattccaa ataccccaca ttggggagaa
     4261 taattcggct tatcttttgc tttttgaaat gctagaatac ctgataaaaa ctatcaggta
     4321 tttttatgca caatccaatc ccgacccata ttttagattt cattcaaact aaccacgttg
     4381 tcaatattgc agctcatacc gaacaggatt tttgggcagc aaattgcttt tatgcctttg
     4441 accaagaaaa tgttcgcttg attatcttaa ccgccaagaa aaccagacac gctggcttga
     4501 tgcttgaaaa cccacatatt gtcggcacaa tttgtgggca aattgagaag atcaacgaaa
     4561 ttgaaggtgt ccaattctcc gctaccgccg aatgtttaga agataaacaa gccgaaaaag
     4621 ccgctttgca aatttattac caaaaacacc cgcttgcacg gcttaagcct agcgatgttt
     4681 gggtgttatc attcaatacc atcaagcaca ccggtaataa acttatgttt gcgaaaaaga
     4741 cgatttggga gagaaatata atttgaagct caaataatgc ctttagcctt atcccgtttg
     4801 atttggcttg gtgttatccc aaaagttcgc ttaaatgccg ttgaaaaatt ctccgaattg
     4861 gcatatccgg caaattcagc tgcttgtgta atactctgcc cttgtaatag taatttatag
     4921 gcttgttcta atttagaacg ccttaaatac gcaaaaatag aggttttgtg gtaatgctga
     4981 aattcatttt gtaatgtggt cacattggta tggaaatata ttgcaatctg cttcaaactc
     5041 cagccgtcaa atttaccgct ctcaagcaat tctgttaact gttgcacccg atcttttttt
     5101 aaccggggag cctgtgtcag ctgagaaaaa gcacttgcta ataaagctaa tagattacct
     5161 tctttctcaa gtaacccaaa tggttgcatt tcctgctctg acacaatatc gtgaataagt
     5221 tttaacatac tctgagtcaa aataatttgg tgggctttta aatgctgttt aaagtgatga
     5281 tagcttgcca aatttaactg gctttctatt agccatttag ggtagagaaa gataacaagc
     5341 tctttttgaa gttgcccttt cctaaaaatt ttacgcccca tttcagctct atttagcggt
     5401 aaaaatgcgg cttgaggttt taaacttgca tctaattcaa atacttccga attaaaatca
     5461 atttccgatc gaccactcaa caatataacc aatcttagtc cggcttcaaa ttccgcaggt
     5521 tcttgctcta cggtttcagt aactgaaatc tctgtatatt tcagcataag atctgaacgt
     5581 agtcggtata aatgtgaaaa accttttatt tggttagctt catcaatcaa gattgttttc
     5641 atc
//
LOCUS       DANLZD010000148         5614 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.148, whole genome shotgun sequence.
ACCESSION   DANLZD010000148 DANLZD010000000
VERSION     DANLZD010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5614)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5614)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5614
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.148"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(184..501)
                     /locus_tag="PXE26_002209"
     CDS             complement(184..501)
                     /locus_tag="PXE26_002209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5594754.1"
                     /translation="MLSRKEVLMTRRASMNLQQIIRNVVEYTYSYESGDKLSAEIHNT
                     LDNLSYFPRIGVIGSVENTRECFCRGYRIIYRETENQVQILAIIHCRQQYPTDYYRSA
                     FKA"
     gene            complement(494..652)
                     /locus_tag="PXE26_002210"
     CDS             complement(494..652)
                     /locus_tag="PXE26_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594755.1"
                     /translation="MTEEYQNFLIEQVKQGLDDIENGRVISLEESRQLCQKTIYETLQ
                     ELQGAVYA"
     gene            complement(706..861)
                     /locus_tag="PXE26_002211"
     CDS             complement(706..861)
                     /locus_tag="PXE26_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594756.1"
                     /translation="MLFKEKGYDEFLTQKIAKGRAELESGKGIPLEQATLLVQSTIEE
                     TAQELDD"
     gene            complement(999..1256)
                     /locus_tag="PXE26_002212"
     CDS             complement(999..1256)
                     /locus_tag="PXE26_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594757.1"
                     /translation="MICHADPEYVKYNYAGLWEKGSDGTFFYNYQQFMPEVEAKESLR
                     EQEPELDDGYNEEEYSEEEYSDENDASDENDNYDETYDDNF"
     gene            1270..1446
                     /locus_tag="PXE26_002213"
     CDS             1270..1446
                     /locus_tag="PXE26_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594758.1"
                     /translation="MAYVRIYQGEAYGWCAEKGEANTECPEALLVSLTGDIFEAVGGD
                     KLKGAKKWQPYKKE"
     gene            1450..1596
                     /locus_tag="PXE26_002214"
     CDS             1450..1596
                     /locus_tag="PXE26_002214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594759.1"
                     /translation="MDTTQKRVALFIIGLSVVMWLRKHNCCTVIFVLLLAALAFSYTM
                     EHLY"
     gene            1612..1818
                     /locus_tag="PXE26_002215"
     CDS             1612..1818
                     /locus_tag="PXE26_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594760.1"
                     /translation="MVKNVVHEEILHNRAELQQAVEKEEFCAKCDNSVVFHLRDNYHE
                     FTLGLDTILQCLHFAEEKGAIRIP"
     gene            1815..2591
                     /locus_tag="PXE26_002216"
     CDS             1815..2591
                     /locus_tag="PXE26_002216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594761.1"
                     /translation="MNIEYSLNHCQGDGVAFYGRLGTDDLIQLFNHLNPQKRKQKMFA
                     NLLTHIESWETHDDIGFEIIRNRFGYRYSHWNTMELYAKTADQLVFFNDSDARRNWYF
                     PTSKVYKYKGLWDEFIQDLEQYIKGTSREMESVGYQIIEASPYQTETVFKFNTENYLV
                     ELKRKPSEFYSELVDWAFGDMCDFEATIEQICQGQLCYADFEATVTDKKSEIQLGLAR
                     LSGISYSPNDRSFSGYRQELIGEAIASARHNAARFAYLHA"
     gene            2706..3118
                     /locus_tag="PXE26_002217"
                     /pseudo
     CDS             2706..3118
                     /locus_tag="PXE26_002217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484619.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
     gene            3132..3287
                     /locus_tag="PXE26_002218"
     CDS             3132..3287
                     /locus_tag="PXE26_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594762.1"
                     /translation="METRIVKVIYDDGDYFFTRINADEQAIRNYYAIGSSIGFDDIRK
                     IIAVEIL"
     gene            3347..4321
                     /locus_tag="PXE26_002219"
     CDS             3347..4321
                     /locus_tag="PXE26_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HDL5594763.1"
                     /translation="MNTQPKFDLYQHITDRIVVALEQGTAPWLKPWSHPECNMALPRN
                     AVSNRLYSGINTLLLWIATAEHGYKQCKWITAKKANELGGYIRKGEKATVVMNYRPDE
                     REKLDEEGNIVYDEEGNPEMERHFFINKHNLFNLDQCENLPVELYDPVSEPKQPKSEP
                     NQYDIFAEIRQIIKGMDLQVEMKPSNRAFYQPGEDKVVMPEMKQFANAQAFHSVLLHE
                     MTHATGANNRLNREGITSGKAKFGNKVYAFEELIAEMGGAFLCAYLGFDTVPQNAAYI
                     ESWIRVLKEDKRAIVRASGKAREACQYMLDALNVAQLADKYDVFEEAA"
     gene            4408..4605
                     /locus_tag="PXE26_002220"
     CDS             4408..4605
                     /locus_tag="PXE26_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594764.1"
                     /translation="MTKSTEIPRGHDNWVITGRDNDGKWHKERFLYYSRREAIQQFRR
                     KHNCVGKHSVIESITPQFGWY"
     gene            4682..4924
                     /locus_tag="PXE26_002221"
     CDS             4682..4924
                     /locus_tag="PXE26_002221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594765.1"
                     /translation="MFNLNLFKRPIELSTLESWSKFCDDVGKVAFIAIPPMIYSNYDL
                     CIKIGNISALLAITYGFLLSGRTIRQFIEKEKSRWD"
     gene            complement(5084..5341)
                     /locus_tag="PXE26_002222"
     CDS             complement(5084..5341)
                     /locus_tag="PXE26_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594766.1"
                     /translation="MNNKQILSIAQKFRQNHKDSHPFMLERGYVRIYQGKAYGWCAEQ
                     EDANTECPTALIVSLSNEIFEATGGDDISGAEKWEKYNSNF"
BASE COUNT         1672 a          984 c         1132 g         1826 t
ORIGIN      
        1 atttttagct cgcacttcat taaaaataga gataaacgtt tgtgcttttt taagtagaga
       61 cattgtggtt ctcctgtttt ttgcacctaa tattattgaa ctatggtagg cttggcgagc
      121 attgccttga gttttaattc ggctacggtc atttttcttt ttatttccat tttatagctc
      181 ctgttatgct ttgaatgcag agcgataata gtcggttggg tattgttgac gacaatggat
      241 aatggctaaa atttgcactt gattttctgt ttctcgatat ataattctat aacctcggca
      301 aaagcattct ctagtatttt ctactgaacc tataacacca attcgtggaa aataagaaag
      361 attatccaaa gtgttatgaa tttccgcaga taatttatca ccactttcat agctataagt
      421 atattccaca acattacgaa tgatttgttg taaattcata cttgctctgc gagtcattaa
      481 cacctctttt cgactaagca tacacggctc cctgtagctc ttgcaaggtt tcatatatgg
      541 ttttttgaca cagttgacgg ctttcttcta atgaaataac acgtccgttt tctatatcat
      601 caagtccttg ttttacttgc tctattaaga agttttggta ttcttctgtc atggataact
      661 cctatcatta gttgtatata gatatattag caatgttaca aattgttaat cgtccagttc
      721 ttgagcagtt tcttcaatag ttgattgaac taacaatgtg gcttgctcaa gaggaatacc
      781 ttttccggat tctaattcag ctctgccttt tgcaattttt tgagtaagga actcatcgta
      841 gcctttttct ttaaatagca ttttatgttc ctttcactta ttacaaggct ttcaggcata
      901 gggattatgt tctcctaaat gcgaaatatt ggaataattt acgcttaaag caatagagtg
      961 tcaagagcag ggtttttgga agtgtggttt gggaatattt aaaaattatc atcataagtt
     1021 tcatcgtagt tatcgttttc atcgctggca tcattttcat cggaatattc ttcttcgcta
     1081 tattcctctt cgttatatcc atcatcaagt tcaggttctt gttcccttag tgattcttta
     1141 gcttcaactt caggcataaa ttgctggtaa ttgtagaaaa aagtgccatc gctgcctttt
     1201 tcccaaagtc cggcgtagtt gtattttaca tattcaggat cagcgtggca tatcatccct
     1261 aattgagggg tggcatatgt tcgtatttac caaggtgagg cttatggttg gtgtgctgaa
     1321 aaaggagagg caaatacaga atgccctgag gccttattgg tgagtttaac cggcgatatt
     1381 tttgaagcag tcggcggaga taagctgaaa ggtgccaaaa aatggcagcc ttacaagaaa
     1441 gaatgacaga tggatacgac acaaaaacgt gtggctttat tcatcattgg attatctgtt
     1501 gtgatgtggc taagaaagca taactgctgt acagtgatat ttgtattgtt gttggcagcg
     1561 ttagcattta gctacacgat ggaacattta tattagctgg ggaactgaat tatggtaaag
     1621 aatgtggttc atgaagagat attacataac cgtgcagaat tacagcaagc ggttgaaaaa
     1681 gaagaatttt gtgcaaaatg tgataactca gtagtattcc atttacgtga taattatcac
     1741 gaatttacgc ttgggttaga tactatattg cagtgtctgc attttgctga agagaaggga
     1801 gctatccgga taccttgaat attgagtatt cactcaatca ttgccaagga gatggagtcg
     1861 cattttatgg tcgacttggt acagatgatc taatccagct tttcaatcat ctcaatccac
     1921 agaaacgtaa acagaaaatg tttgctaatt tgctaacgca cattgagtct tgggaaaccc
     1981 acgatgatat tggttttgaa attatacgaa atcgctttgg gtatcgttac tcgcattgga
     2041 atacgatgga gctttatgct aaaactgcag atcagttagt gtttttcaat gatagtgatg
     2101 ctcgaagaaa ctggtatttt ccgacttcaa aagtgtataa atacaaaggc ttgtgggatg
     2161 agtttattca ggatttagaa cagtatatta agggtacttc ccgtgaaatg gaatcggtcg
     2221 gttatcaaat tattgaagcc tcgccgtatc aaacggaaac cgttttcaaa tttaatacgg
     2281 aaaactatct agtagaactg aaacgtaaac cttctgagtt ttattcagag cttgttgatt
     2341 gggcatttgg tgatatgtgt gattttgaag caactataga gcagatttgt caagggcaac
     2401 tctgttatgc tgattttgaa gcaactgtta ccgataagaa aagtgaaatt cagttaggtc
     2461 ttgctcgctt gagtggaata agttactcgc cgaatgaccg ttcgtttagt ggttatcgac
     2521 aagagcttat tggtgaggcg attgcctctg ctcgccataa tgcagcacgt tttgcctact
     2581 tgcacgccta atttgcagat ttgtacttca atttgaccgc ttgtagtggt taattttcac
     2641 cccgtgggga aatattttcc ctattgggca agatgtttct ccacttttta atttggagaa
     2701 atgtgatgaa aaatgaacac aatttagagc aacttaaata tatttgggat aaccgcaacc
     2761 ttgaaaataa agcctatcaa tacctgtttc acatttgcat tgagccgatg aaaaaaggag
     2821 attggaatcg ttatacgatt tggcttaatt ttcacggcaa cttaatcaac gtgtcagacg
     2881 ttgtatatcg agttgtggaa tctcaaaagc tcaaggatga catcaaaatg tggtatgaca
     2941 ataataccat tgtcgtccga taaaagttga aacaacaggc ttcatctcat atttactgca
     3001 ccagttctat caggggatag cctatatttt actggaacag ggaatgatta ctgaaactga
     3061 agcagccgag aaaagttata acttcagagc tgcaaattgt tttcaacgtt tgctttaatg
     3121 gaggtgagat aatggaaact cgcattgtta aagttattta cgatgatggt gattatttct
     3181 ttacccgaat caatgctgat gaacaggcta tccgtaatta ctacgccata ggcagttcaa
     3241 taggttttga tgatataaga aaaattatcg ctgttgaaat tttataaacc acccataggg
     3301 tgatagcgtt tccccatttt tctacccgaa ctttggagaa acacttatga acactcaacc
     3361 taaatttgat ttataccaac acatcactga ccgaattgtt gtagcactgg aacaaggtac
     3421 agccccgtgg ttaaaaccgt ggagccatcc ggaatgcaat atggcattac ctcgcaatgc
     3481 ggtatctaac cgcttgtatt ccggtatcaa tacactctta ctctggattg ctactgctga
     3541 acatggttac aaacagtgca agtggattac agcaaaaaaa gccaatgaac tcggcggata
     3601 tatccgtaaa ggggaaaaag ctactgtggt gatgaactac cgtcctgatg agagagagaa
     3661 actcgatgag gaagggaata ttgtgtatga cgaggaagga aatccggaaa tggaacgaca
     3721 ctttttcatt aataagcaca atctgttcaa tctggaccag tgtgaaaatt taccggtgga
     3781 actgtacgat cctgtatcag aaccgaaaca acctaaatct gagccaaacc aatacgatat
     3841 ttttgctgag attcggcaga ttatcaaagg aatggatttg caggtggaaa tgaagcctag
     3901 caatcgggca ttttatcaac caggtgaaga taaggtcgta atgccggaga tgaagcagtt
     3961 tgcaaatgct caagcgtttc atagtgtatt gttacacgaa atgactcacg caacgggggc
     4021 aaataatcgg cttaatcggg aaggtattac ttccggaaag gctaaatttg gaaacaaagt
     4081 ctatgctttt gaggagttga ttgctgaaat gggcggtgca tttttatgtg cctaccttgg
     4141 ttttgatact gtgcctcaaa atgcggcgta tattgaaagt tggattcgag tattgaaaga
     4201 agataaacgg gcgattgtcc gtgcttccgg aaaagctcgt gaagcctgcc aatacatgtt
     4261 agacgcatta aacgtcgcac agttggctga caaatacgat gtatttgaag aagctgctta
     4321 acaaatttgc cgaaaggcat atctcaaggg gagacctatc cctttgggca tagtgtttcc
     4381 ctatttttta ttaaatggag aaaagctatg acaaaatcaa ctgaaatacc tcgtggacat
     4441 gataactggg ttattacagg cagagacaat gatgggaaat ggcataaaga acgttttctt
     4501 tattattctc gccgtgaagc catccaacag tttcgtcgaa aacacaactg cgtaggtaaa
     4561 catagtgtta ttgaatcaat aacacctcaa tttggctggt attaaccggc tttcccgtgg
     4621 ggagatactc tcccttcgga gcattgtgtc tcccttttta ttcacttaac tagaggacac
     4681 aatgttcaat ctaaacttat ttaaacgccc tattgagctt tcaacgcttg aatcttggtc
     4741 taaattctgt gatgatgtcg gtaaagttgc atttattgcg atacctccga tgatttatag
     4801 taattatgat ctatgtatca aaataggaaa cataagtgct ttattggcaa ttacctatgg
     4861 attcttatta tcaggcagga ctatccgtca atttattgag aaggagaaat caagatggga
     4921 ttaacaatcg gcttatggat cattgctttt ataggctttg cactggtttt ttgggcaaat
     4981 agcttactca aagagcaaga tgaacgcctt aaacagctaa aaaaatagct caactttaca
     5041 ctcaatacgg cacatttggt gccgtatttc attcttatcc taattaaaaa ttagaattat
     5101 atttttccca tttttcagcc ccacttatat catcacctcc agttgcctca aaaatttcat
     5161 tagataagct gacaattaag gcggtagggc attccgtgtt tgcatcttct tgctctgcac
     5221 accagccata ggcttttccc tgataaatac gaacataacc acgctctagc ataaaagggt
     5281 gagaatcctt gtgattttga cgaaattttt gagcaataga caaaatttgt ttattgttca
     5341 taattatttt tcttattgct tatatgctga aaattgatga ttgaatttat tatatctaat
     5401 tataatattc aatcctgttg ctatactgtc taaatcgact atgtgttcat ccttttggtt
     5461 cataaatgta catttctcta taataactaa aatgtttttg gtctctgaat tgtttattat
     5521 ttcttttgct ggcattagct ccataaagtg agataacttc attcttattg ttctgaagta
     5581 ccaatactta gtattgcaat atgctatcaa catt
//
LOCUS       DANLZD010000149         5486 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.149, whole genome shotgun sequence.
ACCESSION   DANLZD010000149 DANLZD010000000
VERSION     DANLZD010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5486)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5486)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5486
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.149"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            24..2090
                     /gene="glyS"
                     /locus_tag="PXE26_002223"
     CDS             24..2090
                     /gene="glyS"
                     /locus_tag="PXE26_002223"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HDL5594767.1"
                     /translation="MTTQNFLAEIGTEELPPKALKKLATAFAENVENELNQAGLSFEK
                     VEWFAAPRRLAVKVLSLAESQPSKEVEKRGPAVSAAFDAEGKPTKAAEGWAKGCGITV
                     EQAERIATDKGEWLVHRAVIEGQPTKNLLVDIIAKSLANLPIPKTMRWGDKTEQFVRP
                     VHTVTLLFGAELIEGEILGVKSGRTIRGHRFLGEREFQIENADQYPQLLKDRGSVVAD
                     FNERKALILAKSQEKATALGGVADIEEDLLDEVTSLVEYPNVLTAKFEERFLAVPAEA
                     LVYTMKGDQKYFPIYSKDGKLLPHFIFVSNINPEDPSKIIEGNEKVVRPRLTDAEFFF
                     KTDLKQKLEDQLPRLETVLFQQQLGTLRDKTARIEALAGEIAKQIGADETKAKRAGLL
                     SKCDLMTNMVFEFTDTQGVMGMHYARHDGEDEEVAVALNEQYMPRFAGDNLPNSLVAC
                     SVALADKFDTLTGIFGIGQAPKGSADPFALRRAALGSLRIIVEKNLPLDLTDLVAKSA
                     QLFGDKLTNKDVVEDVVDFMLGRFRAWYESEGIAVDVIQAVLARRPTKPADFDARVRA
                     VSHFRTLDSAEALAAANKRVSNILAKADIAIGDIDVSACVEPAEKALAEAVIALKAEV
                     QPLIAQGDYTAVLDKLANLRQPVDAFFDGVMVNAEDQKLRQNRLAILSTLQGLFLQVA
                     DISLLQ"
     gene            complement(2195..3496)
                     /locus_tag="PXE26_002224"
     CDS             complement(2195..3496)
                     /locus_tag="PXE26_002224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine dehydratase subunit alpha family protein"
                     /protein_id="HDL5594768.1"
                     /translation="MNIHCEKLVQSILHAVNHEVVPALGCTEPISLALASAIARQYLG
                     HLPERIEAKVSPNLMKNGMGVAVPGTATVGLPMAAAIGAIGGEPDGGLEVLKNITPEQ
                     VKQAKAMLNTDKVSVSIFETEHILYSEATLFHQANRVCVRIAEHHTNVIYIEKNGQTI
                     LSKPCAVNNDNTTEIFASLSAKDIFNFSMQIELEKIRFIEQAAQLNSALSQEGLRADY
                     GLHIGRTLQKQIGLGLISDDLLNRIVIETTSASDARMGGASLPAMSNSGSGNQGITAT
                     MPIVVVARHLNVTDEQRIRALFLSHLMAIYIHSKLPKLSALCAVTTAAMGSCAGIAWL
                     LTGKFENISMAISSMIGDISGIICDGASNSCAMKVSTSVTSSYKSILMSMDNSQVTGN
                     EGIVEHDIDRSINNLCSIASRSMQYTDRQVIEIMVNKPKLK"
     gene            complement(3510..4787)
                     /locus_tag="PXE26_002225"
     CDS             complement(3510..4787)
                     /locus_tag="PXE26_002225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594769.1"
                     /translation="MDTQKLSPAEFKQATKFDSTDFGWIIMSIGMAIGAGIVFLPVQV
                     GLMGMWVFLLSSIIGYPAMYLFQRLFINTLAESPECKDYPTVISGYLGKNWGIFLGVL
                     YFIMLVIWMFVYSTAITNDSASYLLTFGITNTLLSDNPFYGLVLICILVALSSRGEKL
                     LFKISTFMVLTKLFVVAALGLAMIGMWQLHNIGAMPPFGKLIKDAIITLPFTLTSILF
                     LQTLSPMVISYRAKEQSREVARYKALRAMNIAFAILFITVFFYAVSFTLAMGREEALK
                     AYEQNVSALAIAAQFFPGSWATYVGVALNIFAVMTAFFGVYLGFREATQGIVMNLLLR
                     KFPAEKINPNYVQKGIMLFSILLAWSAIVLNAPVLSFTSICSPIFGLVGCLIPAYLVY
                     KVPALFKYKGLALNIIIITGILLCISPFLTFLE"
     gene            complement(4816..5484)
                     /locus_tag="PXE26_002226"
     CDS             complement(4816..5484)
                     /locus_tag="PXE26_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HDL5594770.1"
                     /translation="MPDKLEYLHDLDKEIMLSYFSLSEAIAGLLGEFCEVVIHSLNAY
                     EKSVIKIINGHHTNRKIGSPITDKGLQLLKCYQKDQSNTELVYFSRLNNGNLVKSTTH
                     IIIGHEGKPIGLFCINLNLSTPLDKTVSSFMNYDPIPPHYKSENFITHPKELIEETFL
                     KAVTHIEQHTTKHSKLYKKSIIFYLFENGIFELKEAVPIVAEKLSLTSHAIYKHLREF
                     KNNT"
BASE COUNT         1626 a         1104 c         1241 g         1515 t
ORIGIN      
        1 tataaaaatt ggtaatttaa acaatgacaa cacaaaactt ccttgccgag atcggcacag
       61 aagagctgcc accgaaggca ctcaaaaaat tagcgaccgc atttgcggag aatgtagaaa
      121 acgaattaaa ccaagcaggt ctttcgtttg agaaagtgga atggtttgct gctcctcgcc
      181 gtttggcggt gaaggtgttg agccttgcgg aaagccagcc gagtaaagag gttgagaaac
      241 gagggccggc ggtgtcggca gcgtttgatg ccgaaggcaa gccgactaag gcagcggaag
      301 gctgggcgaa gggctgcggg attaccgtag agcaagctga gcgtattgcc accgacaaag
      361 gcgaatggtt ggtgcatcgt gccgtgattg aaggtcagcc gactaaaaat ctgttggtcg
      421 atattatcgc caaatcgctg gcgaacttgc cgattccaaa aacgatgcgt tggggcgata
      481 aaaccgagca gttcgtccgc cctgtgcata ccgtgacact tttattcggg gcggagttga
      541 tcgaaggtga gatcttaggc gtgaaaagcg gccgtactat tcgtggtcac cgtttcttag
      601 gtgaacgtga gttccaaatt gagaacgccg atcaatatcc gcaactgttg aaagatcgtg
      661 gatctgtggt agcagatttc aatgagcgta aagccttaat tcttgcaaaa tcacaggaaa
      721 aagcaaccgc tttgggtggc gttgccgata ttgaagaaga tttgctggac gaagtgacct
      781 cgttggtgga atacccgaac gtactcaccg ccaagtttga agagcgtttc cttgctgtgc
      841 cggcggaagc cttagtttac accatgaaag gcgaccaaaa atacttcccg atttattcaa
      901 aagacggcaa attgttaccg cactttattt ttgtgtcgaa catcaatccg gaagacccaa
      961 gcaaaatcat cgagggtaac gaaaaagtgg ttcgcccacg tttgaccgat gcggagttct
     1021 tcttcaaaac cgacttaaaa cagaagttgg aagaccaact gccacgcctt gaaaccgtgt
     1081 tgttccagca acagcttggc acattgcgtg ataaaaccgc tcgcattgaa gcgttggcag
     1141 gtgaaattgc gaagcaaatc ggggcagatg aaaccaaagc gaaacgtgca ggtctcctct
     1201 caaaatgtga cctgatgacc aatatggtgt ttgaatttac tgatacccaa ggcgtgatgg
     1261 gtatgcacta tgcccgccac gacggtgaag atgaagaagt ggcggtggcg ttaaacgagc
     1321 agtatatgcc acgttttgct ggcgataact tgccaaattc attggtggct tgctcggtgg
     1381 cgttggcgga caaatttgac acgctaacag ggattttcgg cattggtcaa gccccgaaag
     1441 gcagtgccga cccgttcgcc ctacgccgtg cggcacttgg ctcgttgcgg attattgtgg
     1501 agaaaaattt accgcttgat ttaaccgatt tagtggcgaa atctgctcaa ttatttggcg
     1561 ataaactcac caacaaagac gtggttgagg acgtggtgga ctttatgctc ggccgcttcc
     1621 gtgcgtggta tgagagcgaa ggcattgcgg tggacgtgat ccaagccgtt ctcgcccgcc
     1681 gtccgaccaa gcctgccgac ttcgatgccc gtgtgcgtgc cgtgtctcac ttccgcaccc
     1741 ttgacagtgc cgaagcctta gccgcagcga ataaacgggt gagtaacatt cttgccaaag
     1801 ccgatattgc aattggcgac attgatgttt cagcttgcgt agagccagca gaaaaagcat
     1861 tagccgaggc ggttattgcg ttgaaagccg aagttcaacc gctgattgca cagggcgact
     1921 acaccgctgt gctggataaa ttagcgaacc tccgccaacc ggttgatgcc ttctttgacg
     1981 gagtaatggt aaatgcagaa gaccaaaaac tgcgtcaaaa ccgcctcgcc attttaagca
     2041 cgctacaagg cttgttcctg caagtggcgg atatttcgct gttgcaataa caataagttt
     2101 gcaataattg caaaatttta atgaaaatag accgcttgca gtaattgtga tctgcaagcg
     2161 gtcttttttg cttgaaattt taccaaaggc gggattattt aagttttggt ttattcacca
     2221 taatctcgat gacttggcgg tctgtgtatt gcatactacg agaggcaatg ctgcataagt
     2281 tattaattga acgatcaata tcgtgttcga caattccttc gttgcctgtt acttggctat
     2341 tatccataga catcagaatg gatttatagc ttgatgttac gctggtggag actttcatcg
     2401 cacaactgtt tgaagcacca tcacagataa taccgctaat atcgccgatc atactactaa
     2461 ttgccatact gatattctca aatttccctg tgagcagcca cgctatgccg gcacagcttc
     2521 ccatagccgc ggttgttacg gcacagagtg cagataattt cggtaacttg ctgtgaatat
     2581 aaattgccat gaggtgtgat aaaaagagtg ctctaatgcg ttgctcatca gtgacattta
     2641 aatggcgggc aacgacaaca atcggcatag ttgctgtaat tccttgatta cctgaacccg
     2701 aattgctcat agcaggtaaa cttgcaccgc ccattctagc atcagaggca gaggtggttt
     2761 ctataacaat gcgattaagc aaatcatcac tgattagacc tagaccaatc tgtttttgca
     2821 atgtccttcc gatatgtagc ccataatcgg cacgtaatcc ttcttgtgag agtgcggaat
     2881 ttaattgtgc tgcttgctca ataaagcgaa ttttttccaa ttcgatttgc atagaaaaat
     2941 taaatatatc ttttgccgaa agtgaagcaa agatctcagt agtattatcg ttattgacgg
     3001 cacaaggttt gcttaaaata gtttgcccgt ttttttcaat gtaaatgaca ttggtatggt
     3061 gttcagcaat acgaacacat actcgattcg cttggtgaaa tagtgttgct tcagaatata
     3121 gaatatgttc tgtttcgaaa atagagacag acactttatc ggtatttaac atagctttag
     3181 cttgcttaac ctgttctggc gtaatatttt ttaatacttc taatccacca tcaggctccc
     3241 ctccgattgc tccaatagct gccgccatag gcaatccgac ggttgcagtt cccggtactg
     3301 ctactcccat cccatttttc atcaagttag gggaaacttt tgcctcaata cgttctggta
     3361 aatgacctaa atattggcgt gcaatggcgg atgcaagggc gagagaaata ggttctgtac
     3421 agcctaatgc agggacaact tcatggttga ctgcatgtaa aatggattgt actaattttt
     3481 cgcagtgaat attcatagat aaaaccttat tactctaaaa atgtgaggaa tggagaaata
     3541 cataataaaa tgccggtaat gataataata ttgagtgcta gccctttata tttgaataat
     3601 gcaggcactt tatagactaa ataggccgga atcaagcacc caactaagcc aaaaatagga
     3661 ctacagattg aggtaaagct taaaaccggt gcatttaata caatcgcact ccaagccagc
     3721 agaatggaaa ataacataat ccctttctgc acataattag gattgatttt ttcagccggg
     3781 aattttctta ataataggtt catcacaatg ccttgagtgg cttctctaaa acctaaatat
     3841 accccgaaaa aggctgtcat aacggcaaaa atatttaatg caacacctac ataggttgcc
     3901 caactaccag ggaaaaattg ggctgcaatt gctaatgcgg aaacattttg ctcgtatgct
     3961 ttgagcgctt cttctctccc cattgcaagt gtaaaagaga cagcgtaaaa aaaaacggta
     4021 ataaataaga tagcaaatgc aatattcatc gctcgtaggg ctttatagcg cgcaacttca
     4081 cgagactgtt ctttagcacg gtaagaaatt accattgggc tgagagtttg caagaagagt
     4141 atagaggtta gggtgaaagg aagggtaatg atggcatctt ttataagttt gccgaaagga
     4201 ggcattgcac cgatattatg gagttgccac attccaatca ttgcaagccc taaggcggca
     4261 acgacaaata gcttagttaa taccataaat gtagatattt taaacagtag cttttcgcct
     4321 cgagaagata aggcaactaa tatacagatt agcactaagc cataaaatgg attatcagag
     4381 agtagtgtat tggtaatgcc gaaggtaaga agataggagg cactgtcgtt tgtaattgcg
     4441 gtagaataaa caaacatcca aatcactaac ataataaaat aaagtacacc taaaaagatt
     4501 ccccagtttt tgcccaggta gccactaata acggtggggt aatctttgca ttccggagat
     4561 tctgctaaag tattaatgaa cagacgctga aaaaggtaca tcgccgggta tccgataata
     4621 gaagaaagta gaaaaaccca catgcccata agtcctactt gtaccggtaa aaagacgatg
     4681 cctgccccga tagccatacc aatactcata atgatccagc cgaagtcggt agaatcaaat
     4741 tttgttgctt gtttaaattc ggcaggcgag agtttttgag tatccataga gtctccttaa
     4801 atcgtaacag tataattaag tgttattttt gaattctctt aaatgtttat aaattgcgtg
     4861 gctggttagg gagagttttt ctgccacaat aggtactgcc tcttttagct caaagatgcc
     4921 attttcaaac aaatagaaga taatggattt cttatagagt tttgaatgtt tggtagtgtg
     4981 ttgctcaatg tgagtaactg cttttagaaa ggtttcttca ataagttctt ttgggtgagt
     5041 aataaagttt tcacttttat aatgaggcgg aataggatcg taattcataa aagagctaac
     5101 ggttttatct aatggtgtcg ataaatttaa attaatacaa aataatccga taggtttgcc
     5161 ctcatgcccg ataataatat gcgtggtgga cttaactaag ttaccgttat ttaaccgtga
     5221 aaagtaaacc agctcagtat tagattgatc tttttggtaa cattttagta actgtaatcc
     5281 tttatctgta ataggcgaac ctatttttcg gttagtatga tgtccgttaa tgattttaat
     5341 aacggatttt tcataggcat tcaatgaatg aataaccacc tcacagaatt ctcctaataa
     5401 ccctgctatt gcttcactta atgagaaata agacagcata atttctttgt ctaaatcatg
     5461 aagatactct aatttatctg gcataa
//
LOCUS       DANLZD010000150         5389 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.150, whole genome shotgun sequence.
ACCESSION   DANLZD010000150 DANLZD010000000
VERSION     DANLZD010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5389)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5389)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5389
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.150"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            40..531
                     /locus_tag="PXE26_002227"
     CDS             40..531
                     /locus_tag="PXE26_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5594771.1"
                     /translation="MQTKPILDACCGSRMFHFDKQNPHVLFADNRQIETTMKDSGKVR
                     HLEIKPDVLHDFTNMPYENESFWHVVFDPPHLVQGGENSWLVKKYGKLPCNWREVLKK
                     GFDECMRVLKPNGTLIFKWNETQIPVSEILKVIDCQPIYGHKSGRLNQTHWLAFVKIE
                     QSL"
     gene            557..832
                     /locus_tag="PXE26_002228"
     CDS             557..832
                     /locus_tag="PXE26_002228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HDL5594772.1"
                     /translation="MEQPTEFLTKDELTDLTGYRQKKRQIEWLRERHYIIQDENKYKP
                     LVLYKDVYGHPRQQYPEAQSTGKWKSPAYLMGVKNGKTTQTTESLLT"
     gene            792..1847
                     /locus_tag="PXE26_002229"
     CDS             792..1847
                     /locus_tag="PXE26_002229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5594773.1"
                     /translation="MGRPRKQQNRYLPENLRPKTVTRKSGKTVIYWLYRTHGKTEISL
                     GTNRNEAFIKAAQLNIERESQTARITFGLVAKRYRDEVIPQKKASTAQTDLCKIKNLL
                     LFFNDAPLEEITPQHIREYMIWRKDTPGSANNEFSMFSHIWQYAREWGYTNLPSPNIG
                     MKRYPIRKREIYVENNIFQMVYEVADQDMRDLMDLAYITGQRPVDLVNIRKEHIFDGY
                     LHIVQQKTQAKLRIEIVGKLADIIQDRLEKATGTHLFSTKKGEKLTARKLGKRFTYIR
                     EQAVKNNPEYANEIMAFQFRDLRAKSGTDKALSLGEEAARQQLGHTSVQMTKTYIRKA
                     PIVTPIKESVPSSKHQS"
     gene            complement(1974..3047)
                     /locus_tag="PXE26_002230"
     CDS             complement(1974..3047)
                     /locus_tag="PXE26_002230"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HDL5594774.1"
                     /translation="MAQQITLFEDVPLPLTLGGELSPITVAYQTYGRLNAEKSNAVLL
                     CHALTGDAKPYYDSPTEKGWWQDFIGKGLAFDTDKYFFICSNVLGGCKGTTGPASINP
                     KTNKPYGSLFPIITVQDIVNVQKALLDYLEIPQLHAVVGGSFGGMQATQWGISYPDKV
                     RNIINLCSSLTLSAEAIGFNHVMRQAIINDPHFNGGNYYDGIAPDNGLKIARMLGMLT
                     YRTDIQLAKAFGRETKQQGQIWGDHFQVESYLSYQGTKFLGRFDANTYLRLLRALDLY
                     DPALGYENEETALKRIKANYTFVAVTSDQLFKQVDVYKSKQKLEQAGVNLEFHEFHSD
                     FGHDAFLVDYDFFEPMIKAGLAK"
     gene            3315..3998
                     /locus_tag="PXE26_002231"
     CDS             3315..3998
                     /locus_tag="PXE26_002231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL5594775.1"
                     /translation="MNQTRDRLEKLPLFHKMQQFIIKALKIIAIFPLLGIAILLVVDS
                     LTSYIVRDKIYTDSKQIPYREYAVVLGTAKFYSKDVINQYYKYRLEAAKQLVQEGKVN
                     QLLLSGDNKTPYYNEPKTMTSDLLKMGIATSKIKQDYAGYTTFYSIIRAKKVYKLPPF
                     TIISQKFHCERALFIAKFRDIDAICYAATYPEGAYQVRMREILARSAMVFSLLIGKEP
                     ESLEDIRSK"
     gene            complement(4035..4874)
                     /gene="purU"
                     /locus_tag="PXE26_002232"
     CDS             complement(4035..4874)
                     /gene="purU"
                     /locus_tag="PXE26_002232"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HDL5594776.1"
                     /translation="MLQQHKILLTECPDDTGLVAKITNICYKHQLNIIKNSEFVENET
                     KRFFMRTELNGIFNDETLLTDLKFTLPEGSSYKLLPKQRKRIVILVTKEAHCLGDLLM
                     KNYYGGLDVEIAAVIGNHETLKSLVERFDIPFHLVSHENLTRVEHDKLLAEKIDEYSP
                     DYIVLAKYMRVLNPEFVARYPNRVVNIHHSFLPAFIGAKPYHRAYERGVKIIGATAHF
                     VNDELDEGPIIMQNVINVDHTYTAEAMMRAGRDVEKTVLSQALELVLADKVFVYKNKT
                     IIL"
     gene            complement(4944..5345)
                     /locus_tag="PXE26_002233"
     CDS             complement(4944..5345)
                     /locus_tag="PXE26_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H-NS histone family protein"
                     /protein_id="HDL5594777.1"
                     /translation="MSALKSLLNIRSLRALAKDLALEQLKSISEKLDIIIAEKEEEMK
                     QEELEKLKQLESLNKYREMLKQDGLSIDELAELLADKVIKTRKALSPRPAKYKFVDAN
                     GNEKTWTGQGRTPKALQDALDSGKKLEDFAI"
BASE COUNT         1742 a          986 c         1020 g         1641 t
ORIGIN      
        1 aaccgcttgt tccgcaagcg gttatttttt ggagaaaaaa tgcaaacaaa accgatatta
       61 gatgcctgtt gtggttcccg tatgtttcat tttgacaagc aaaatccaca cgttttattt
      121 gctgataatc gacaaataga aaccacaatg aaagacagtg gcaaagtccg ccatttagaa
      181 atcaaacctg atgttttaca cgacttcacg aatatgccat acgaaaacga gagtttttgg
      241 cacgttgttt ttgatccgcc acatttagtt caaggtggag aaaatagctg gcttgtgaag
      301 aagtacggca aattaccttg caactggcga gaagtcttga agaaaggctt tgacgaatgt
      361 atgcgagtgc taaaaccaaa cggcacgctt attttcaagt ggaatgaaac acaaatcccc
      421 gtttcagaaa ttttaaaagt tattgattgt cagccgattt atggacacaa aagcggacgc
      481 ttgaaccaaa cacattggct ggcgtttgtg aaaattgagc aatccctcta aattgagggg
      541 gttatttgga gagaatatgg aacaaccgac tgaattttta acgaaagacg aacttactga
      601 tttaacaggc tatcgtcaaa agaaaaggca aatcgaatgg ttgagggagc gtcactatat
      661 aattcaagat gaaaacaagt ataagccatt agtgctatac aaagatgtct atgggcaccc
      721 ccgccaacaa tatccagaag ctcaatccac tgggaaatgg aaatcacctg cttatttaat
      781 gggagtgaaa aatgggaaga ccacgcaaac aacagaatcg ctacttacct gagaatttac
      841 gtccaaaaac agttacacga aaatcaggca aaactgtcat ttattggcta tatcgcacgc
      901 acggaaaaac ggaaatctct ctaggcacaa atagaaatga ggcttttatt aaggctgctc
      961 aactcaatat agaaagagaa agccaaactg ccagaattac cttcgggctt gtagccaaac
     1021 gttatcgaga tgaagttata cctcagaaaa aagcgagcac agcacaaaca gatttgtgca
     1081 agataaaaaa tctactgcta ttctttaatg acgctcctct cgaagaaatc acccctcaac
     1141 atatccgaga gtatatgatt tggcgaaaag acacacctgg atctgctaat aacgaatttt
     1201 caatgttcag tcatatttgg caatacgctc gagagtgggg ttatacaaac ttaccaagcc
     1261 ctaatatcgg aatgaaacgc taccctatca gaaagcgtga aatttacgtt gagaacaata
     1321 tatttcagat ggtatatgaa gtggcagatc aggatatgag agacttaatg gatctcgcct
     1381 atatcaccgg acaacgtcct gtcgatttgg tcaatatccg gaaagaacac atttttgatg
     1441 gttatctcca tattgttcag caaaaaacac aagccaaact acgtattgag atagtgggaa
     1501 aactggctga tattatccaa gataggctgg agaaagctac tggaacacac ttattcagca
     1561 ctaagaaagg ggaaaagcta accgctagaa aactaggtaa aaggttcact tatattcggg
     1621 aacaagcggt caagaataac ccggaatacg caaatgaaat aatggcattc caatttcggg
     1681 atctaagagc taaatcagga acagataaag ccctttctct aggtgaagaa gccgctcgcc
     1741 aacaactagg tcatactagc gttcaaatga ccaaaacata cattcgaaaa gccccaatag
     1801 taacccctat caaagaaagt gttccctcct caaaacacca gtcttaaaag acagtttcgg
     1861 aacattttgc attttttcgg aacgtttaca taaaaatcac ttataataga ttgaaagata
     1921 agtaattttt gttactcgtt attactgata atatttttaa taaaaaatgc aatttatttt
     1981 gctaatccgg ctttaatcat cggttcaaaa aagtcataat caaccaaaaa ggcatcgtgt
     2041 ccgaaatcgg agtgaaactc gtggaactcc aaatttacgc ctgcctgttc taatttttgt
     2101 ttgctcttat acacgtcaac ttgcttgaat agttggtcgc ttgttaccgc tacaaaagtg
     2161 tagttggctt taatacgttt tagggcggtt tcttcatttt catagccaag agccgggtcg
     2221 tataaatcta atgctcggag taaacggagg taagtgttgg catcgaaacg acctaaaaat
     2281 ttcgtgcctt gatagcttaa ataggattcc acttggaaat ggtcgcccca aatttgtcct
     2341 tgctgtttgg tttctcgtcc aaaggcttta gcaagttgaa tatcagtacg gtaagtcagc
     2401 ataccgagca tacgggcgat ttttaagccg ttatcaggtg caatgccatc ataatagttc
     2461 ccaccgttaa agtgtggatc gttaataata gcttggcgca taacgtggtt aaaaccgata
     2521 gcctcggcac ttagggtaag tgacgaacaa agatttataa tgttgcgaac tttatcaggg
     2581 taactaatac cccactgtgt tgcttgcatt ccgccgaaag atccccctac cactgcgtga
     2641 agttgaggga tttctaaata gtccaataat gctttttgta cattaacaat atcttgcact
     2701 gtaataattg gaaacaaact accgtaaggt ttattggttt tagggttaat cgaagctggg
     2761 ccggttgtgc ctttacaacc gcctaataca ttactgcaaa taaagaaata tttatcggta
     2821 tcaaacgcaa gccctttgcc gatgaaatct tgccaccagc ctttctcggt tggtgagtca
     2881 tagtaaggct tagcatcacc ggtaagggcg tggcaaagca agaccgcatt gcttttctct
     2941 gcatttaatc tgccgtaagt ctggtaagcc actgtgatag gggacagttc gcctcctaat
     3001 gtgagtggta aaggtacgtc ctcaaaaagg gtaatctgct gagccataaa aatcctgttt
     3061 gcaaaaaatt ctgctttttt gaccgcttgt tgtaatgacc gttaaattag cggtgttcat
     3121 ttcaattgtc aagaattttt agacgtctaa acgtctagat ttttaaacgg ctaaaatcaa
     3181 aattttattg ctgagaagat atttattact taacaaataa catgaaatag aataaattta
     3241 ttgaacgatt agactatttt gtttgtctct aatttaccca tcttaaatag ggtagcaaaa
     3301 gtaaaggatc tcatttgaac caaacgcgtg ataggttaga aaaattgcca cttttccata
     3361 aaatgcagca gtttattatt aaggcattga aaataattgc aattttcccc ttattgggaa
     3421 tagctatatt attagtggtt gattcactta caagttatat tgtgagggat aaaatttata
     3481 cagatagtaa acagattcct taccgggagt atgcagttgt actcggtacg gcaaaatttt
     3541 actctaaaga tgtgattaac caatattata aatatcgttt ggaagccgct aagcaattag
     3601 tccaagaagg aaaggtcaat cagcttttgt taagtggaga taataaaacg ccgtactata
     3661 atgagccaaa aacaatgaca agtgatctac ttaaaatggg gattgcgact tcaaaaatta
     3721 agcaggatta tgcggggtat accacttttt attcaataat tagggctaaa aaagtatata
     3781 aattaccgcc atttacgatt atctcccaaa aattccactg tgaaagggca ttgtttattg
     3841 caaaatttag ggatattgat gcaatttgtt atgccgctac atatccagag ggggcttatc
     3901 aggtacgaat gcgggaaatt ttagccagat cggcaatggt ttttagtttg ttgataggta
     3961 aagagcctga atcattggaa gatatccgtt ctaaatgaga tagccggtca gataatgttg
     4021 accggctatt ttgcttataa aataatggtt ttgtttttat atacaaatac tttgtcagca
     4081 agcactaatt ctaaggcttg gctaagtacg gttttctcga catcacgtcc ggcacgcatc
     4141 atagcctctg cggtgtaggt gtgatcaaca ttaatcacat tttgcataat aatcgggcct
     4201 tcatctaatt catcattcac aaaatgggcg gttgcaccga taattttcac tccacgttcg
     4261 tatgcacgat gataaggttt tgcaccaatg aaagcgggta agaacgagtg gtgaatattg
     4321 acaactcggt ttggataacg agcgacaaat tccggattca gcacccgcat atatttagcc
     4381 aacacaatat aatcaggtga atattcatca attttttccg ctaataattt atcgtgttcc
     4441 actcgggtta aattttcgtg gctgactaaa tggaatggaa tatcgaaacg ttcaactaaa
     4501 ctttttaatg tttcgtggtt tccaatcacg gcagcaattt ctacatctaa tccaccatag
     4561 taatttttca tcagtaagtc acctaaacaa tgtgcttctt tggtaactaa aataacgata
     4621 cgttttcttt gtttagggag taatttatag cttgagcctt caggtaaggt aaattttaaa
     4681 tcagtgagta aggtttcatc attaaaaatt ccgtttaatt cggtacgcat aaaaaaacgt
     4741 ttagtttcat tctcaacaaa ttcagaattt ttaataatat ttaattggtg cttatagcaa
     4801 atattggtaa ttttagcgac aagtcctgta tcatcaggac attcagttaa taatattttg
     4861 tgttgttgta gcatttcatt tcctattata aaaataagag aactcaattg agttctcttt
     4921 aaactaaaaa tagttatagc caattaaata gcaaaatctt ctaatttttt accactatct
     4981 aaagcatctt gtaatgcctt tggtgttctg ccttgacctg tccaagtttt ctcattgccg
     5041 ttagcatcaa caaatttata tttagccggg cgaggtgata gtgctttgcg ggttttgatt
     5101 actttatctg ctaataattc agctaattca tcaatagata acccatcttg ttttagcatt
     5161 tctctatatt tatttaaact ttctagttgt tttagttttt ctaattcttc ctgtttcatt
     5221 tcttcttctt tttcagcaat aattatatct aatttctcag aaattgattt taattgctct
     5281 aatgctaaat ctttagccaa agcccttaag ctgcggatat tcaaaagact ttttaaagct
     5341 gacattttac tctcctaaat taatgtttta tataagtagc ttttatgct
//
LOCUS       DANLZD010000151         5198 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.151, whole genome shotgun sequence.
ACCESSION   DANLZD010000151 DANLZD010000000
VERSION     DANLZD010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5198
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.151"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            67..747
                     /locus_tag="PXE26_002234"
     CDS             67..747
                     /locus_tag="PXE26_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00153 family protein"
                     /protein_id="HDL5594778.1"
                     /translation="MALNNILGLFAQSPLKPLQKHSNKVTECSELLESFFEATFEHDW
                     EKAAEVRGKIVDLERRADALKREIRLKLPRGLFMPVERGDLLELVTQLDKLANYSRDI
                     SGRIIGRKLIIPTEMQPLFKKFLSRSIDASRQVRKVLDEMDQLLETGFRGRELDFVNK
                     MILELDQIEDDTDQYQITLRHTLLELEKNLNPIDVMFLYKCIERISVLADQAQRIGSR
                     IELMLAKS"
     gene            759..2027
                     /locus_tag="PXE26_002235"
     CDS             759..2027
                     /locus_tag="PXE26_002235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HDL5594779.1"
                     /translation="MELLNQYGSILVIITAIVGFMMAFGIGANDVSNAMGTSVGSGTI
                     TIKQAILIAMVFEFAGAYLAGGEVADTIKSGIIDPAQFANSPDILVLGMMASLCAAGM
                     WLIIATKMGWPVSATHTIIGAVIGFALITIGSDAIQWDALGGIVGSWFVTPILAGIVA
                     YSIFINSQKLIFNRSNPFKQAKKYGPMYMGITIFILVIVTVSKGLKHVGLHLDTAETL
                     GISFALALLAFIIGYFYFRSKSFAMKARAEEKGFAGVEKIFSILMLITACAMAFAHGS
                     NDVANAIGPLAAVESIVRSGGMIEGKTTLAPWILPLGALGMMIGLAIMGKNVMATVGT
                     GITDLTPSRGFAAQFACAVTVVIASGTGLPISTTQTLVGAVLGVGFARGIAALNLGVI
                     RNIVISWVITLPVGAVLSIIIYYILSAIFY"
     gene            2082..2693
                     /locus_tag="PXE26_002236"
     CDS             2082..2693
                     /locus_tag="PXE26_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HDL5594780.1"
                     /translation="MKKLSSALLSCFLLGLSSPALTADTYITENLSTFMRKGAGDQFR
                     ISGAIQAGEKVTVLDRKERYSLIRDSRNREGWVLNSDLSDTASPKELIPQLKQQVQDL
                     TNRLSKIDTEWQQRTAEMQRRTQDSVQKSSDLVEENAQLKRELEILKNKNRDLETMHD
                     SEKREIVIQWFIYGGAVLGAGLLLGLLVPFLIPRRRRNNSGWA"
     gene            complement(2747..4045)
                     /gene="aroA"
                     /locus_tag="PXE26_002237"
     CDS             complement(2747..4045)
                     /gene="aroA"
                     /locus_tag="PXE26_002237"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HDL5594781.1"
                     /translation="MEKLTLTPISRVEGEINLPGSKSLSNRALLLAALATGTTQVTNL
                     LDSDDIRHMLNALKALGVKYELSDDKTVCVVEGIGGAFKVQNGLSLFLGNAGTAMRPL
                     AAALCLKGEEKSQIILTGEPRMKERPIKHLVDALRQVGAEVQYLENEGYPPLAISNSG
                     LQGGKVQIDGSISSQFLTALLMSAPLAEGDMEIEIIGDLVSKPYIDITLSMMNDFGIT
                     VENRDYKTFLVKGKQGYVAPQGNYLVEGDASSASYFLASGAIKGKVKVTGIGKKSIQG
                     DRLFADVLEKMGAKITWGEDFIQAEQSPLKGVDMDMNHIPDAAMTIATTALFAEGETV
                     IRNIYNWRVKETDRLTAMATELRKVGAEVEEGEDFIRIQPLALENFQHAEIETYNDHR
                     MAMCFSLIALSNTEVTILDPNCTAKTFPTYFRELEKLSVR"
     gene            complement(4091..5185)
                     /locus_tag="PXE26_002238"
     CDS             complement(4091..5185)
                     /locus_tag="PXE26_002238"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDL5594782.1"
                     /translation="MQFINIANEGVKSLSPYQAGKPIEELERELGIQNIIKLASNENP
                     FGFPESAKKAILNQLDDLTRYPDSNGFELKTTIAQKFGVQANQITLGNGSNDLLELFA
                     HTFAGEQDEIIYSQYAFIVYPLVTKAINAVAREILAKNWGHNLDAFLAAITEKTKLIF
                     IANPNNPTGNFLTQAEIEGFLAKVPANVIVVLDEAYTEFTAPQERVDSFGLLAKYPNL
                     IVSRSLSKAYGLAGLRIGYAVSNPEIADLLNRVRQPFNCNSLALASAIAVMNDDEFVK
                     KVAENNRLEMARYEAFCQANGLEYIPSKGNFITIDFKRPAAPIYEALLREGVIVRSIA
                     GYGMPNHLRISIGLPQENERFFTALLKVLA"
BASE COUNT         1482 a         1061 c         1058 g         1597 t
ORIGIN      
        1 caagtaaaat acgccggact ttacagtaag aagtcattgt caatattatc actatggaga
       61 tattttatgg cattgaataa cattttaggt ttattcgccc agtccccact taaaccgtta
      121 caaaaacact caaataaagt gactgaatgt agcgagttat tagaatcttt ttttgaagcg
      181 acttttgaac atgattggga aaaagcagct gaagtgcgcg gtaaaattgt tgatttagaa
      241 cgccgcgcag atgcccttaa acgtgaaatc cgcttaaaac tgcctcgtgg tttatttatg
      301 ccagttgaac gcggtgattt attagaacta gtcacacaat tagataagtt agcaaactat
      361 tcaagagata tttccggtcg cattattggt cgtaaattaa tcattcctac cgaaatgcaa
      421 ccacttttca aaaaattcct ttctcgtagt attgatgcta gccgtcaggt acgcaaagtt
      481 ttggatgaaa tggatcagtt attagaaact ggttttagag ggcgagagct tgatttcgtc
      541 aataaaatga ttcttgaact tgaccaaatt gaagatgata ccgaccaata tcaaattaca
      601 ttacgtcata cacttcttga gttagaaaaa aacctgaacc ctattgatgt gatgttttta
      661 tacaaatgta ttgaaagaat cagcgttcta gctgaccaag cccagcgaat tggttctcgt
      721 attgaactta tgctggcgaa gtcataggag aaaattaaat ggaattactc aatcaatatg
      781 gctcaatact ggtgattatt actgctattg tagggtttat gatggctttc ggtattggtg
      841 ctaatgatgt ttcaaatgcc atgggaacat ccgtcggctc tggaacaatt acgattaaac
      901 aagctatttt aattgctatg gtatttgaat ttgctggtgc ttatctggca ggcggtgaag
      961 tcgcagatac aattaaaagt ggcattattg atccggcaca attcgccaat agccctgata
     1021 tcctggtact tggaatgatg gcatctctct gtgctgccgg aatgtggcta attattgcaa
     1081 ctaaaatggg ttggccggtt tcagcaactc acacaatcat tggtgccgtt attggttttg
     1141 cattaatcac tattggttca gatgcaattc aatgggatgc attaggtgga attgttggga
     1201 gttggtttgt gacccctatt cttgcgggga tcgtagcata ttcgatcttt attaactcac
     1261 aaaaactgat ctttaaccgc tcaaacccat tcaaacaagc gaaaaagtat ggcccgatgt
     1321 acatgggaat tactattttt attttagtta ttgtaaccgt gtcaaaaggc ttaaagcacg
     1381 taggattaca tctagataca gctgaaacat tgggaatttc attcgcgctt gccttacttg
     1441 cttttatcat tggatatttt tatttccgca gtaaaagctt tgcaatgaaa gctcgtgcag
     1501 aagagaaagg cttcgctggc gttgagaaaa tttttagtat tttaatgctt attacggcct
     1561 gtgctatggc ttttgctcat ggctctaatg atgttgctaa tgctattggg cctctagctg
     1621 ctgttgaatc tattgtaaga agtggtggaa tgattgaagg taaaacgact ttagcccctt
     1681 ggattctccc actaggcgcc ttaggtatga tgattggttt agctattatg ggcaagaatg
     1741 taatggctac agtaggtact ggtattaccg accttactcc aagccgtggc tttgctgctc
     1801 aatttgcctg cgccgtcacg gttgtcattg catcaggtac tggtttacca atatcaacaa
     1861 cccaaacgct tgtaggagca gtattaggtg tgggattcgc ccgtggtatt gctgcactta
     1921 acttaggcgt tattcgtaat attgttatat catgggtaat taccttgcct gtaggtgctg
     1981 tgctttcaat tattatctat tatattttaa gcgctatttt ctattaattt ttcaaaaaga
     2041 atacaggcaa ctgtattctt cctagcttta gaggaatata tatgaagaaa ttatcatcag
     2101 ctcttctgtc ttgtttttta ctcggcctat ctagccctgc tttaacggca gacacttaca
     2161 ttactgaaaa tctgagtaca tttatgcgca aaggtgctgg tgatcaattc cgcatttcag
     2221 gcgctattca agcaggtgaa aaagtcacag tattagatcg taaagagcgc tacagtctga
     2281 ttcgagatag tcgtaaccgt gaaggttggg tacttaattc agacttaagc gatactgcta
     2341 gtccaaaaga gctgattcct caattaaaac aacaggttca agatttaacc aatcgcctga
     2401 gcaaaatcga taccgaatgg caacaacgta ccgcagaaat gcaacgtaga acgcaagatt
     2461 cagtgcagaa aagcagtgat ttggttgagg aaaatgcaca actaaaacgt gaactggaaa
     2521 tcctgaaaaa caaaaatcgt gatttagaaa caatgcacga ttccgagaaa cgtgaaatcg
     2581 tgattcagtg gttcatctat ggtggtgctg tgttaggcgc aggtttacta cttgggttac
     2641 tcgtgccttt cctgatccct cgccgcagac gtaacaacag cggttgggct tagtctgcca
     2701 caataaaacg taaaaaggat tcagttttct gaatcctttt ttacttttat ctgaccgata
     2761 atttttccaa ctccctaaag taagtcggga acgttttagc ggtacaattt ggatctaaga
     2821 tcgtcacttc tgtattcgat aacgcaatta atgaaaaaca cattgccata cggtgatcgt
     2881 tataggtttc aatttcagcg tgctggaagt tttctaacgc aagcggttga atccgaataa
     2941 aatcttcccc ttcttctacc tctgccccga ctttacgcaa ttcggttgcc attgctgtca
     3001 agcggtcggt ttcttttacc cgccagttat aaatattgcg gataactgtt tctccttcgg
     3061 caaataaagc ggttgttgca atcgtcattg ccgcatcagg aatatgattc atatccatat
     3121 ctacgccttt tagcggggat tgctcggctt gaataaaatc ctctccccaa gtgatttttg
     3181 cccccatttt ttccaacaca tcggcaaaca agcggtcgcc ttggatcgat tttttaccaa
     3241 tgcccgttac ttttaccttg cctttaatcg caccggaggc taagaaataa gaggcagaag
     3301 aggcatctcc ctccaccaaa taattacctt gtggagcaac atagccttgt ttacctttaa
     3361 ctaaaaaggt tttgtaatct cgattttcaa ccgtaatacc aaaatcgttc atcatcgaaa
     3421 gggtaatatc aatataaggt tttgatacca gatcaccgat aatctcaatt tccatatcgc
     3481 cttccgctaa tggggcagac atcagcaatg cggttagaaa ttggctggaa atcgagccgt
     3541 caatttgcac ttttccgccc tgcaaaccgc tattgctaat tgccaacggt ggatagcctt
     3601 cattttctaa atactgtacc tctgccccta cttggcgtaa agcatcgact aagtgtttaa
     3661 tcgggcgttc tttcattctt ggttcaccgg taagaatgat ttgggatttt tcctcacctt
     3721 ttaaacacaa tgctgctgca agtggtcgca ttgccgtgcc tgcattgccg agaaacagtg
     3781 ataagccgtt ttgaacctta aaagctccac caatcccttc aactacacag acggttttat
     3841 cgtccgatag ctcatatttc acgcctaacg cttttaaggc attgagcata tgtcgaatat
     3901 catcactatc taataaattg gtcacttgag tcgtaccggt ggctaaggcg gctaataata
     3961 aggctcggtt agacaggctt ttagaaccag gtaaattgat ctcgccttct actcgggaaa
     4021 tcggggttaa agttagtttt tccatttttc tctttaaatt tgtaaaattt tcataaaagg
     4081 taaccgcttg ttaagctaac actttcaata aggcagtaaa aaatctctcg ttttcttgcg
     4141 gtaaaccgat actaatgcgt aaatgattcg gcattccata acctgctatc gagcgaacaa
     4201 tcacgccttc acgcagtaat gcctcataaa tcggagcggc aggacgtttg aaatcaatag
     4261 taataaaatt gcccttagaa gggatatatt ccaagccgtt tgcttggcag aaagcctcat
     4321 agcgagccat ttccaagcgg ttattttctg ccactttttt gacaaattca tcatcattca
     4381 ttaccgcaat cgctgaagct aaggcaagac tattgcagtt aaacggctgg cgaacacgat
     4441 ttaataaatc cgcaatttca gggtttgaaa ccgcataacc aatccgaagc ccggctaagc
     4501 cgtaagcctt agagagtgaa cgtgacacaa ttaaattcgg gtattttgcc aataagccaa
     4561 acgaatccac ccgttcttga ggcgcagtaa actcggtata agcttcgtcc agcaccacga
     4621 ttacatttgc cggcacttta gctaaaaagc cctcaatttc cgcttgggtt aaaaaattac
     4681 cggtcggatt attcgggttg gcaataaaaa ttaatttagt tttttcggta attgcagcca
     4741 aaaaggcatc taaattgtgt ccccaatttt tagccagaat ttcacgggca acggcattaa
     4801 tcgctttcgt caccaacgga tacacaataa acgcatactg agaatagata atttcatctt
     4861 gctcaccggc gaaggtgtgg gcaaacagct ctaataaatc gtttgagcca ttgcctaagg
     4921 tgatttgatt ggcttgtacg ccaaattttt gggcaatagt ggtttttaat tcaaagccgt
     4981 ttgaatccgg atagcgggtt aaatcgtcaa gctgattcag aatcgccttt tttgcacttt
     5041 caggaaaacc aaatgggttt tcgttcgagg ctaatttaat gatattttga atccctaatt
     5101 cacgctctag ctcctcaatc ggctttcctg cttggtaagg cgaaagggat ttcacgccct
     5161 catttgcgat gttgataaat tgcataataa cctctgat
//
LOCUS       DANLZD010000152         5156 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.152, whole genome shotgun sequence.
ACCESSION   DANLZD010000152 DANLZD010000000
VERSION     DANLZD010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5156)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5156)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5156
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.152"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            140..613
                     /locus_tag="PXE26_002239"
     CDS             140..613
                     /locus_tag="PXE26_002239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HDL5594783.1"
                     /translation="MLEKITACPCQTGKRYAECCQPFHLKQTFASTAEQLMRSRYSAY
                     TLVNIPYIVETTVPSQQKLLDQTAMKEWAENTKWVGLSVLNHLPSLSRIHSQVEFKAF
                     FDTDEGIQGHHETSLFVQIDERWFFVDPTVPLPHQKQPCVCGSGKKFKHCCGNYL"
     gene            685..1314
                     /locus_tag="PXE26_002240"
     CDS             685..1314
                     /locus_tag="PXE26_002240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HDL5594784.1"
                     /translation="MDFSKILSQVLDTAKDAATNGLIKGNSKNDQIAKIGGGAVAIGL
                     ISMLFGRNGGSSLAKLGSLAAIGSLAYQAYQKYQAQNSSVSELSQNNFENVDENVASK
                     VILQAMIAAAASDGAITEEEKAAIVSQVGDEAEVIEWIRQEMDTPATVEEIARQVGND
                     QALATQVYLASRAVCRDLERKEIVFLANLADALGLAEALVEQLEKDAGF"
     gene            complement(1392..2039)
                     /locus_tag="PXE26_002241"
     CDS             complement(1392..2039)
                     /locus_tag="PXE26_002241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5594785.1"
                     /translation="MISIRNVSKQYRTNNGWKTILKDINFELKKGEKVGILGRNGAGK
                     STLIRLMSGVEPPTTGTIERQMSISWPLAFSGAFQGSLTGMDNLRFVSRIYDADFDYV
                     KSFTEEFSELGEYLYEPVKSYSSGMKARLAFALSLSIEFDCYLIDEVIAVGDARFAAK
                     CKHELFEKRKDRSLILVSHSPASIKEYCDSAMVLEEGIMHTFDSIDNAYNFYNKT"
     gene            complement(2036..2833)
                     /locus_tag="PXE26_002242"
     CDS             complement(2036..2833)
                     /locus_tag="PXE26_002242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_157140410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5594786.1"
                     /translation="MRYGDNTTFKRSCVIQKRVIHALLMRELITRYGRKNIGFLWLFI
                     EPLLLTLVITVAWKYIKADKFSTLNIIAFMITGYPIAMMWRNASNRAQGAISANLSLL
                     YHRNVRVLDTIFTRVLLEVTGASIAQILLMTIFIAIGWIEMPNDIFYMLCAWILMAFF
                     ALGLGLIICTLAHYIEPFGKIWGTFSFFLLPLSGAFFFVHNLPLTAQNIALWFPMIHG
                     TEMFRHGYFGETVITYESISYLIVSDIILLFIGLLCVRSFSKGIEPR"
     gene            complement(2833..3936)
                     /locus_tag="PXE26_002243"
     CDS             complement(2833..3936)
                     /locus_tag="PXE26_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL5594787.1"
                     /translation="MSKKKKHFLANPLLWLTVIIPTACSGIYYSLFASDIYVSESSFV
                     VRSPNNQSSLTGVGALLQNSGFARSQDDTYSVQEYMRSRTALEQLEAEIPVKRFYSEQ
                     GDLLSKFNGLGFNDTQEAFYRYFKERLNIDVDSISGIATLRVRAFNAEEGQKINENLL
                     QQGETLINRLNERARQDTVEFAEERVKEAEKDVNNTALALSQYRTKNKIYDLPAQSSV
                     QLSLISTLKSELIRVETQLAQLKSITPDNPQVAALQMRQKSLKKEIDDQSKQLAGGNT
                     SVATQTAEYQRLVLANELAQQQLAAAMTSLQNTRGEADRQQLYLEVIGRPSKPDWALE
                     PYRIYNIISTFFIGLILFGVLSLLLASIREHKN"
     gene            complement(4008..5156)
                     /locus_tag="PXE26_002244"
     CDS             complement(4008..5156)
                     /locus_tag="PXE26_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HDL5594788.1"
                     /translation="MTLSLISACSSLPTSGPSYSEILASNENTAETQLPEVNLIKLDN
                     ITVQNLYQEQQSQRFSGFDGSMGVGGYAGTVNVGDILEISIWEAPPAVLFGGTFSAEG
                     QGNGHLTQLPQQMVNKNGTVTVPFIGNIKVAGKTPEVIQNQIVGALSRKANQPQALVR
                     IANNLSSDVTVIRQGNSIRMPLSANNERILDAVAAVGGTSENIEDVTVRLTRGNKVRS
                     MAFETLIADPSQNITLRSGDVIALMNTPYSFTGLGAVGNNQQMRFSSKGITLAEAIGK
                     MGGLIDERSDPRGVFVFRHIPFTQLDYDNQAQWREKGYAEGMDVPTVYQVNLLKPQSM
                     FLLQRFPIQDKDIVYVSNAPLSEFQKFLRMIFSITTPITGTANTIRAY"
BASE COUNT         1631 a          974 c          918 g         1633 t
ORIGIN      
        1 aagcaatgaa tacccaaaaa attcacgatt tttgcataag ttatccacaa ggggtatgtc
       61 acgctttttt ataaaattta tttttcttta tttatagcgt aaacttttca catctttatt
      121 tttatgcgga aatgtaaaaa tgttagaaaa aatcaccgct tgtccttgcc aaacaggcaa
      181 acgctacgct gaatgttgcc aacctttcca tttaaaacag acatttgcat caacggcaga
      241 gcaattaatg cgctcccgtt acagtgctta tactttggtt aatattccct atattgtgga
      301 aacgacagtg ccaagtcagc agaaattact tgatcagact gcaatgaaag agtgggctga
      361 aaatacaaaa tgggtaggat tatccgtgct aaatcactta ccttctcttt cgagaataca
      421 tagtcaggtt gaatttaaag ccttttttga tacagatgag gggatacagg gacaccacga
      481 aacctctctt tttgttcaaa ttgatgagcg atggtttttt gtggatccta ccgtaccttt
      541 gcctcatcaa aaacaacctt gtgtatgtgg ctccggaaag aagtttaagc actgttgtgg
      601 aaattatctt taatttgaat tgaactcttg tttgaatcta aggactaatg agtaaatttc
      661 atttacttac caagaggaac aaaaatggat ttcagtaaga ttttaagtca agtattagat
      721 acagcaaaag atgccgctac aaacggatta attaaaggta attctaaaaa cgatcaaatc
      781 gctaaaattg gtggcggcgc tgtcgctatt ggtttaattt caatgttatt tgggcgtaat
      841 ggcggttcaa gtttagcaaa attaggctct ttagccgcta tcggtagcct tgcttatcaa
      901 gcataccaaa agtatcaagc gcaaaattca tcggtttcag aacttagcca aaataatttt
      961 gaaaatgtag atgaaaatgt ggcaagtaaa gtgattttac aagcaatgat tgccgctgct
     1021 gcttcagatg gtgctattac tgaagaggaa aaagcagcta ttgtttccca agttggagat
     1081 gaggctgaag tcattgagtg gattcgtcaa gaaatggaca ctccggctac agttgaagag
     1141 attgcccgcc aagtaggtaa tgaccaagca ttggctacac aagtttactt agcttcccgt
     1201 gcagtatgca gagatttaga acgcaaagaa atcgttttct tagctaattt agctgatgct
     1261 ttaggtttag ctgaggcatt agttgaacaa ttagaaaaag acgcaggttt ctaattttca
     1321 gttttagtaa caagcggtta tattttgaga gttttttgcg aaaaacttgt gaaatataac
     1381 cgcttgttct tttatgtttt attgtagaaa ttataagcgt tatctataga atcaaaagta
     1441 tgcatgatac cctcttctaa aaccattgca gaatcgcaat attctttaat tgaggctggg
     1501 ctatgagaaa ctaaaatcaa tgaacggtct ttccgttttt caaaaagctc gtgcttacat
     1561 ttggcagcga atcgagcatc gcctactgca atcacttcat caattaagta acaatcaaat
     1621 tcaatagaaa gcgataatgc aaaggctaaa cgggccttca taccagaaga atagcttttt
     1681 accggttcat ataaatattc accgagttct gaaaattctt cggtgaaaga ttttacatag
     1741 tcaaaatcag catcataaat tcggctgacg aaacgaagat tatccattcc ggtcaaacta
     1801 ccctggaatg caccactaaa tgccagtggc caagaaatcg acatttgacg ttcaatcgta
     1861 cctgttgttg gaggttctac tccgctcatt aaacggatta aggttgattt tcctgcacca
     1921 ttgcgcccta aaatccccac tttttcgcct tttttcagct caaaatttat atcttttaat
     1981 atggttttcc aaccgttatt agttcgatat tgcttactta catttctaat actaatcatc
     2041 ttggttctat ccctttacta aaacttctca cacaaagcag tcctataaat agaagaataa
     2101 tatcacttac tataagataa ctaatgctct cataggtaat taccgtttca ccaaaataac
     2161 catgtctaaa catttctgta ccatgaatca ttggaaacca taaggcaata ttttgagcag
     2221 ttagcggtaa attatggaca aagaagaatg caccagaaag aggaagtaga aagaagctga
     2281 atgttcccca aatcttacca aaaggttcaa tataatgtgc taaagtacag ataattaaac
     2341 ctaaacctaa ggcaaaaaat gccattaata tccaagcaca gagcatatag aaaatatcgt
     2401 taggcatttc tatccaacca atagcgataa atatagtcat taagagaatt tgggcgatag
     2461 atgcgccagt aacttctaat aaaactcgag taaatatcgt atctagcact ctcacatttc
     2521 tgtggtaaag caaacttaag tttgctgata ttgctccttg agctctatta gaggcatttc
     2581 tccacatcat tgcgataggg tagcctgtaa tcataaaagc gataatattt aaagttgaaa
     2641 acttatctgc ttttatatat ttccaagcaa cagtaatcac taacgttaac aataatggtt
     2701 cgataaaaag ccataagaag ccaatatttt tacgcccata acgagtaatt aattccctca
     2761 ttaaaagggc gtgaatcacc cgtttttgaa tcacacagga acgtttaaag gttgtattat
     2821 caccatatcg cattagtttt tatgctctct aatacttgct agtaacaaac ttaatactcc
     2881 aaatagaatt aagccgataa aaaaagttga tataatatta taaattctgt agggttctaa
     2941 tgcccaatct ggtttgcttg gcctaccaat tacctctaaa taaagttgtt ggcgatcagc
     3001 ttcacctcgt gtattttgta atgaagtcat tgctgctgca agttgttgct gagctaattc
     3061 gttagcaaga accaaacgtt gatattcagc agtttgcgtt gctacagaag tattacctcc
     3121 tgcaagttgt ttggactgat catcaatttc ttttttcaaa cttttttgac gcatttgtaa
     3181 tgcggctacc tgaggattat ccggcgtaat tgacttcaat tgtgctaatt gtgtttctac
     3241 ccgaattaat tcacttttta aggtagaaat taatgagagc tgaacgctgg attgtgccgg
     3301 taaatcataa attttatttt tagttcgata ttggcttaat gctaacgcag tattattgac
     3361 gtctttttcg gcctctttta cacgctcttc tgcaaactca accgtatctt gtcttgctct
     3421 ttcattaagg cggttaatta atgtttcccc ttgctgtaat aaattctcgt taattttttg
     3481 tccttcttct gcattaaaag cacgaacgcg tagcgttgca atacctgaaa tagaatcgac
     3541 atcaatattc agacgttctt taaaataacg ataaaatgct tcttgggtat cgttaaatcc
     3601 taaaccgtta aatttgctta gtaaatcacc ttgctcacta taaaaacgct ttaccggaat
     3661 ttctgcttca agttgttcta atgcggtacg ggaacgcata tattcctgaa ctgaataggt
     3721 atcatcttga gaacgggcga aaccggagtt ttgcaataaa gcaccaacgc ctgttaagct
     3781 cgattgatta ttgggcgaac gaaccacaaa gctagattct gaaacataaa tatcagaggc
     3841 aaataaggaa taataaattc cagaacaagc agttggaata attacagtta gccacaacaa
     3901 agggttggct aaaaaatgtt ttttcttctt tgacataaaa tcctcaacga aaagtgttac
     3961 aagcggtcat tttttaatga ttttttacca ttttatctat gagctaatta gtacgctcta
     4021 attgtattag ctgtacctgt aattggtgta gtaatggaga aaatcattct caagaatttt
     4081 tgaaattcag acagtggagc attcgacaca tatacaatat ctttatcttg aatagggaaa
     4141 cgctgcaata aaaacattga ttgcggtttt aataaattca cctgataaac agttggaacg
     4201 tccattccct ctgcataacc tttttcacgc cattgagctt ggttatcgta atctaattgt
     4261 gtaaaaggaa tatggcggaa tacgaacaca ccacgagggt ctgaacgctc atcaattaat
     4321 cctcccattt taccgatagc ttcagcaagg gtaatgcctt tacttgaaaa acgcatttgt
     4381 tgattattac ctactgctcc taatccggta aagctataag gagtattcat taacgcaata
     4441 acatcacctg aacgtaatgt aatattttgt gaggggtcag caattaatgt ttcaaacgcc
     4501 attgaacgca ctttatttcc acgtgttaaa cgaactgtta catcttcaat attttcgctt
     4561 gtaccaccta ctgccgcaac tgcatctaaa atacgctcat tattggcact taatggcata
     4621 cgaatgctat ttccttggcg gataaccgta acatcagacg acaagttatt cgcaatacga
     4681 actaatgctt gaggttgatt agctttacgg ctcaatgctc cgacaatttg attctgaatt
     4741 acttcaggtg tttttccagc aactttaata ttaccgataa aaggcacagt taccgttcca
     4801 tttttgttca ccatttgctg aggtaattgg gttaaatgcc cattaccttg cccttcagca
     4861 ctaaatgttc caccaaatag cacggcaggt ggcgcttccc aaatggatat ttctaatata
     4921 tcgcctacat taactgttcc agcataacca cccacaccca ttgagccatc aaatcctgaa
     4981 aaacgttgag attgttgctc ttggtataag ttttgtacgg tgatgttatc taacttgatt
     5041 aaattgactt caggcaactg cgtttcagct gtattttcat tacttgctaa gatttcgcta
     5101 tagcttgggc cggacgttgg taggctagag caggctgaaa ttaatgataa tgttat
//
LOCUS       DANLZD010000153         5151 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.153, whole genome shotgun sequence.
ACCESSION   DANLZD010000153 DANLZD010000000
VERSION     DANLZD010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5151)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5151)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5151
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.153"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..518
                     /locus_tag="PXE26_002245"
     CDS             <1..518
                     /locus_tag="PXE26_002245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase family
                     protein"
                     /protein_id="HDL5594789.1"
                     /translation="FANTLWQEKKIRLLLNPQGSMREISTQELSELLSMIDKRYVQHI
                     SCLLTNTTNSAEYLSKIKAPFEISLAPNSDILGYCALVNSADIVIAVDGGGVHISCAL
                     GKKLLSFYANHPANIARWYPKPKKDVETFMVIADKWTEDNNDTRGFSLVAPAKWLNHQ
                     FAKLIEKYTAC"
     gene            complement(573..785)
                     /gene="rpmE"
                     /locus_tag="PXE26_002246"
     CDS             complement(573..785)
                     /gene="rpmE"
                     /locus_tag="PXE26_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HDL5594790.1"
                     /translation="MKQGIHPEYKEITATCSCGNVVKTRSTVGKDLNLDVCGNCHPFY
                     TGKQRVVDTGGRVERFNKRFSIPSSK"
     gene            1148..3154
                     /gene="tkt"
                     /locus_tag="PXE26_002247"
     CDS             1148..3154
                     /gene="tkt"
                     /locus_tag="PXE26_002247"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HDL5594791.1"
                     /translation="MTERKVLANAIRFLSMDAVQKANSGHPGAPMGMADIAEVLWRDF
                     LKHNPTNPKWADRDRFVLSNGHGSMLIYSLLHLTGYDLSIEDLKQFRQLHSKTPGHPE
                     YGYAPGVETTTGPLGQGITNAVGIAIAEKTLAAQFNREGHKIVDHYTYAFLGDGCLME
                     GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTAQRFESYGWQVIRNVDG
                     HNPEQIKFAIENAQAETERPTLIICKTIIGYGSPNKSNSHDCHGAPLGDAEIQAAREF
                     LGWEHAPFVIPAEIYTEWDAKAKGTLAEKDWNAKFAAYEAAYPELAAEFKRRYAGELP
                     ANWEAESKAFIEKLQANPATIASRKASQNAIEAYAPILPEFLGGSADLASSNLTLWSG
                     SKPIRAEHNVDGNYINYGVREFGMSAIMNGIALHGGFIPYGATFLMFYEYAHNAVRMA
                     ALMKQRALFVYTHDSIGLGEDGPTHQPVEQTASLRQIPNLETWRPADQVESAVAWKAA
                     VERKDGPTALIFTRQNLAQQQRTAEQLANISRGGYILRECCEKGSCPDLILIATGSEV
                     DLAMKAADVLDAEGVKVRVVSMPSTNVFDKQDEAYRESVLPRSVTKRVAIEAQLADFW
                     YKYVGFDGRIVGMNSFGESAPADQLFKLFGFTVENVVAKAKEIL"
     gene            complement(3280..4350)
                     /locus_tag="PXE26_002248"
     CDS             complement(3280..4350)
                     /locus_tag="PXE26_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HDL5594792.1"
                     /translation="MNEIIFSLEPQDNARLQSLCGAFDEHLALIEKSFNLIIARTGFN
                     FTIQSEDDNHYSATLVQNSVKLIKQLYNETAPIKGKIKELDLEDIHLAIQESRMLLQN
                     QWQAGSQGEIAIKTKRGVIKPRSEHQQAYLRNILSHDISFGIGPAGTGKTFLAVAAAV
                     ESLERQEIRRILLTRPAVEAGEKLGFLPGDLGQKIEPYLRPLYDALFEMLGFEKAQKL
                     MERGVIEIAPLAYMRGRTLNDAFIILDESQNTTTEQMKMFLTRIGFNSKAVITGDITQ
                     VDLPRSQKSGLKHAMEVLKEVPELSFNFFDSKDIVRHPVVAKIVQAYDAWEAVDEERK
                     EQRKLEKLALEQEKILAQAEML"
     gene            complement(4365..5090)
                     /gene="fadR"
                     /locus_tag="PXE26_002249"
     CDS             complement(4365..5090)
                     /gene="fadR"
                     /locus_tag="PXE26_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid metabolism transcriptional regulator
                     FadR"
                     /protein_id="HDL5594793.1"
                     /translation="MGHSDILKAQSPAALAEEYIVKSIWNNHFPAGSDLPAERELAER
                     IGVTRTTLREVLQRLAREGWLSIQHGKPTRVNDIWETSGPNIIGTIIKLDKSYLPVVI
                     ANVVSLRTRMAEAYIPEAIYLAPEESAKLFDGLDELENTAAAYAEFDYKLFRQFTFLA
                     NKPVYALILNSFKSMYHQVAKIFFADENNRQLTLSFYRSLLCTCLAKDSEKAAACMAK
                     NRQSSGEIWQKLSANIPESFGQL"
BASE COUNT         1543 a         1077 c         1008 g         1523 t
ORIGIN      
        1 gttttgcaaa tacgctatgg caagagaaga aaattcgatt actattgaat cctcaaggta
       61 gtatgcgtga aatttctact caagaattat cagagctatt atctatgatt gataaaagat
      121 atgttcaaca tattagttgt ttgctgacca atacaaccaa tagtgccgaa tatttgtcga
      181 aaattaaagc cccatttgaa ataagcctag cacctaatag tgatatttta ggttattgtg
      241 cattagtaaa ctctgctgat attgtaattg cagttgatgg aggtggtgtc catatttctt
      301 gtgcattagg caagaaattg ctctcatttt atgccaatca tccagctaat attgcacgct
      361 ggtatccaaa acctaagaaa gatgttgaaa cttttatggt gatcgcagat aaatggaccg
      421 aggataataa tgatactcga ggtttttctc tggtagctcc tgcaaaatgg ttaaatcacc
      481 aatttgcaaa attgatagaa aaatacaccg cttgttaatt cgatatataa gaaaaacaaa
      541 accccgcatt agcggggttt gcaataatca aattattttg agcttgggat gctgaaacgt
      601 ttgttaaagc gttcaacacg accaccggtg tcaacaacac gttgtttacc agtatagaac
      661 gggtggcagt tgccacatac gtctaagttt aaatctttac ccactgttga gcgagtttta
      721 actacattac cgcaagagca agttgccgta atttctttat attctgggtg aataccttgt
      781 ttcattgggg aacctcataa gaagccatat cgccgcctat cttgttagaa tctctaccgc
      841 tgataggtac catatgtaat taataaaaat gttgagcaaa tgctcaacgc caaaaagagt
      901 gcgtatttta gataaatttg ttgcctagat caactactaa acattcgctt tatcaagaaa
      961 atattgtatt aggaaaaaac cgtctattaa aatcaaatcc aatcaaaaca aatcacaatt
     1021 taatcatttt ttgtgataca gatcacattt ctcatttcca tttttgagtt tttctagcaa
     1081 aatagtgtag aatccaattc gatatccttt ccattttata taacattctc gattaggagt
     1141 aacacaaatg acagaacgta aagtgctagc gaatgcaatt cgttttttaa gtatggatgc
     1201 tgtacaaaaa gctaactcag gccacccagg cgcaccaatg ggtatggctg atattgcaga
     1261 agttttatgg cgtgattttt taaaacacaa tccaactaat cctaaatggg cagatcgtga
     1321 ccgttttgtt ctgtctaacg gacacggttc aatgttaatc tatagcttac ttcatttaac
     1381 cggctatgat ctctctattg aagatttaaa acagttccgt cagttacatt ctaaaacacc
     1441 tggtcaccct gaatatggtt atgcaccggg tgttgaaacc accacaggcc cgttaggtca
     1501 aggtattacc aatgcggtcg gtatagcgat tgcggaaaaa acccttgcag cacaatttaa
     1561 ccgtgaaggt cataaaattg tcgatcacta cacttacgct ttcttaggcg atggctgttt
     1621 aatggaaggt atctcacacg aagcttgctc tctcgccggt acattaggct taggcaaact
     1681 gattgctttc tacgatgata acaatatctc tatcgacggc cacgttgatg gttggttcac
     1741 tgatgatacc gcacaacgct ttgagtctta tggctggcaa gttatccgta atgtcgatgg
     1801 ccataaccca gaacaaatca aatttgcgat tgaaaatgca caagccgaaa ccgagcgtcc
     1861 aactttaatt atttgtaaaa ccattatcgg ctatggttca ccaaataaat caaactctca
     1921 cgattgccac ggtgcgccat tgggtgatgc tgaaatccaa gccgctcgtg aatttttagg
     1981 ttgggaacat gccccatttg tgattccagc tgaaatttat acagagtggg atgcaaaagc
     2041 aaaaggtaca ttagcagaaa aagattggaa cgctaaattt gctgcttatg aagcggcata
     2101 ccctgaacta gccgctgaat ttaaacgccg ttacgcaggc gaattaccgg ctaactggga
     2161 agctgaaagc aaagctttta ttgaaaaatt acaagcaaat ccggcaacca ttgcaagccg
     2221 taaagcatca caaaatgcaa tcgaagctta cgcgccaatc ttacctgaat tcctcggcgg
     2281 ctcagctgac ttagcaagct ctaacttaac cttatggtct ggctcaaaac cgattcgtgc
     2341 ggaacacaat gtagatggta actacatcaa ctacggcgtg cgtgaattcg gtatgtctgc
     2401 gattatgaac gggattgccc tacacggtgg tttcattcct tacggtgcaa ccttcttaat
     2461 gttctacgaa tatgcacaca atgcggtgcg tatggcagcc ttaatgaagc aacgtgcctt
     2521 atttgtttat acacacgact ccatcggttt aggtgaagac ggcccgaccc accaaccggt
     2581 agaacaaact gcttcattac gccaaattcc aaacttagaa acctggcgtc cggcagacca
     2641 agtagaatct gctgttgctt ggaaagcggc ggtagaacgt aaagacggcc cgacagcact
     2701 aatctttacc cgccaaaatc tggctcaaca acaacgtact gcggagcaat tagcgaacat
     2761 ctctcgtggt ggctatatct tgcgtgaatg ttgcgaaaaa ggcagttgcc cggatttaat
     2821 cttaattgca accggttctg aagtagattt agcaatgaaa gccgctgatg tgttagatgc
     2881 agaaggcgtg aaagtgcgtg tagtttcaat gccaagcacc aacgtgtttg acaaacaaga
     2941 tgaagcctat cgtgaatcgg tattaccacg ttcagtcact aaacgtgtgg cgattgaagc
     3001 tcaattagct gacttctggt ataaatatgt cggctttgat ggtcgaattg taggtatgaa
     3061 tagctttggt gaatccgcac cagcagatca attattcaaa ctcttcggct ttaccgttga
     3121 aaacgtggtt gctaaagcaa aagaaatctt ataatgaaac aataagataa agaaaagcgg
     3181 gaattaactt cccgcttttt tgttgaacaa ctgttatgat aagcggtgaa atttcagcga
     3241 ttttttgcaa aaaattagcg aaatatgacc gcttgtaagc tataacattt cagcttgagc
     3301 aagaattttt tcttgctcta aagctaattt ttccagtttt cgctgttctt tacgctcttc
     3361 atcaaccgct tcccacgcat cataggcttg cacaattttg gcaaccacag ggtggcggac
     3421 aatatctttg ctgtcaaaga aattaaagct gagttccggc acttctttta gcacttccat
     3481 tgcgtgtttt aagcctgatt tttggctacg gggcaaatcc acttgggtaa tatcgccggt
     3541 aatcaccgct ttggaattaa agccaatacg ggttaagaac attttcattt gctcggtagt
     3601 cgtgttttgg ctttcatcta aaatgatgaa cgcatcgttt aaagtacgcc ctcgcatata
     3661 agcaagtggg gcaatttcaa tcacaccacg ttccatcaac ttttgagctt tttcaaagcc
     3721 aagcatttca aacagggcat catataacgg gcgtaagtaa ggctcaattt tttgccctaa
     3781 atcgccgggt aaaaaaccga gcttttcacc ggcttccacc gccggacggg taagtaaaat
     3841 acggcggatt tcttggcgtt caagcgattc caccgctgcc gctaccgcta aaaaggtttt
     3901 gcctgtgcca gcaggcccga taccaaaact gatgtcgtgg cttaatatat ttcgtaaata
     3961 ggcttgttga tgttcgctac gaggtttaat cacccctcgc ttggttttaa tcgctatttc
     4021 gccttgcgag ccggcttgcc attggttttg tagtagcatt cggctttcct gaatcgccaa
     4081 atgtatatct tctaagtcca attccttaat tttgccttta atcggggcag tttcattata
     4141 cagttgctta atcagcttca cactattttg aaccaaggta gcagaatagt gattgtcatc
     4201 ttccgattga atcgtaaagt tgaagcctgt tcgagcaata atgagattaa aacttttttc
     4261 aattaaggct aaatgctcat caaatgcacc acaaagcgat tgcagacgag cattatcttg
     4321 cggttctaag ctaaaaataa tttcgttcaa aattctacct tctgttaaag ctgaccaaag
     4381 ctttcaggaa tattagcgga taatttttgc caaatttcac cactagattg gcgattttta
     4441 gccatacaag cggctgcttt ttcactatct tttgcaagac aagtacataa taatgaacgg
     4501 taaaagctta acgttaattg acgattattt tcatcagcaa agaaaatttt tgcgacttga
     4561 tgatacattg atttaaagct atttaggatc aacgcataca caggcttatt ggctaaaaaa
     4621 gtaaattgtc tgaataactt ataatcaaat tcagcataag cagctgctgt attttctaat
     4681 tcatctagtc catcaaagag tttagcactt tcttcaggag caaggtaaat cgcttctgga
     4741 atataagcct ccgccatacg agtacgtaat gacaccacat tggcaatcac cactggaaga
     4801 tagcttttat ctagcttaat aatagtgcca ataatattag gccccgaagt ttcccaaata
     4861 tcattcactc ttgttggctt gccgtgctga atacttaacc aaccttctcg cgctagacgt
     4921 tgtagtactt cacgtaaagt tgttcttgtt accccaatgc gctctgctaa ctctcgctcg
     4981 gcaggaagat cagagccggc agggaaatga ttattccaaa tactctttac aatatattct
     5041 tccgctaacg ctgccgggct ttgcgctttt aaaatatcac tgtgacccat taatgccccc
     5101 caagcaaaaa atatgcttat ctaaaatcta actattcttt atttctaatc a
//
LOCUS       DANLZD010000154         5125 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.154, whole genome shotgun sequence.
ACCESSION   DANLZD010000154 DANLZD010000000
VERSION     DANLZD010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5125)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5125)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5125
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.154"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            141..2777
                     /locus_tag="PXE26_002250"
     CDS             141..2777
                     /locus_tag="PXE26_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDL5594794.1"
                     /translation="MDEGFMVKHPRHSSHLHPLIHQLTTPEGEVRIYDASYPQFEVNP
                     VEKEDGIDLIPSLETHGAGVAGIIAAQADKTLGDGYSGGIAKGAELYVATKSYKRTLE
                     KVIQDAKKELENAKDEEDEKTPSLDQMAKNDLLASKEKEMAIERAEWASGLNKLLDNN
                     VFAINNSWNPFSISDDINVVDKFYQSIKQNKHNPLLQAIMRAKNSNTLLVFAAGNESK
                     KQPGVMALLPRYFPELEKNLISAVAVDKEQKIASYSNHCGASKNWCVAAPGDLHVLIG
                     VADEHKKPQYGLTKEQGTSFSAPAITASLAVLKERFDYLTATQIRDTLLTTATDLGEK
                     GVDNVYGWGLINLKKAVNGPTQFLNDETITVTRDDHWSNPLASQFKITKKGDKSLHLD
                     GENHLDTVAVEEGRLALNGKTKVKTISNHANLAVNGTEVEQNYSSSGQSQLEVLGKSG
                     LIANAQANIHLAGSLKIDDKLTEKTEAGDVSATVVQLKDKATYQGGFTQLVENENLAK
                     RGLIQDLYFKESEIIAKVNKPLTDEKADTNGQAGLALLNALRTTPIAYRRSWYNGWLQ
                     SALEQRKLDNLHYAVSNNIYADSLELLRSQNAKGLTQAQQHLFTAYHTPLQTTVWAEH
                     LNQKQSASSKHTDVKHHQSQLGVNHKLADKTVLSATLSQQKNRLEKPFAQATLKQTAL
                     NIGLRYHLDNAWFSEATLQFARQKYQQSRRFASHQLGTAETRGSTLGGEMRIGYQFMP
                     NQWIIEPSLGVQWIQTKMNGLNESGELATQTAAMRYRDVNIVPSVKLQRTFQLEQGSI
                     SPYIGLNYLHRLNGKITKITSNIAGKTLHSEATTKRNRQLNGEVGVKLHYKNWFTAMN
                     LDYSRVKSANLFGWKVNVGFSF"
     gene            complement(2918..3355)
                     /locus_tag="PXE26_002251"
     CDS             complement(2918..3355)
                     /locus_tag="PXE26_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HDL5594795.1"
                     /translation="MDWFFNWIGWSILGFVLLALELVLPGVFIMWWGFASLILAFIVA
                     LFTLGQALQIALFAIIATIFSLIWWKYQHGKDKKEDQSSSLNSREHAMLGAQGFVVEI
                     LPNGIARGKFGDTTWRVIGNNLQVADKIEVQKVEGITLFVRKQ"
     gene            complement(3391..4311)
                     /locus_tag="PXE26_002252"
     CDS             complement(3391..4311)
                     /locus_tag="PXE26_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH/Band 7/PHB domain protein"
                     /protein_id="HDL5594796.1"
                     /translation="MNFDLPIVSIAFVVLVLVALSSTIKIVPQGYHWTVERFGRYTKT
                     LSPGLNIVVPFIDRIGRKMNMMEQVLDIPSQEVISRDNASVAIDAVCFVQTVDARRAA
                     YEVNHLEQAIVNLTMTNMRTVLGSMDLDDMLSQRDLINGRLLSIVDEATNIWGVKVTR
                     IEIRDVRPPKELVAAMNAQMKAERNKRADILEAEGIRQAEILRAEGEKQSRILKAEGE
                     RQEAFLQAEARERAAEAEAKATQMVSEAIAKGDTTAINYFIAQKYTEALKEIGSSDNS
                     KVVLMPLEAGNLIGSVAGIAEILKSNKTSS"
     gene            complement(4327..5016)
                     /gene="ung"
                     /locus_tag="PXE26_002253"
     CDS             complement(4327..5016)
                     /gene="ung"
                     /locus_tag="PXE26_002253"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HDL5594797.1"
                     /translation="MKTWTEALGEEKQKAYFQQILQYVHNERLAGKVIYPPQNEVFSA
                     FALTEFSDVKVVILGQDPYHGPNQAHGLAFSVKPPVAPPPSLVNMYKELSEDIEGFQI
                     PPHGYLIDWAKQGVFMLNTSLTVEQGRAGSHSQIGWEIFTDKVIAQLNQHRDNLVFLL
                     WGSHAQRKGQFIDRNRHCVLASPHPSPLSAYRGFFGCKHFSKANNYLISQGISPINWQ
                     LSVDVSYSSTH"
BASE COUNT         1704 a         1038 c          946 g         1437 t
ORIGIN      
        1 aaacacttat tgcaattagc atttctagtt ttttatctat tgcatacgct acagaatcaa
       61 tagagaatcc acaacctatc attcaattat ctgagagcct cagctcaaaa tatagtggca
      121 agggtgttaa actaggcgta atggatgagg gcttcatggt taaacaccct cgccatagtt
      181 cacatcttca tcctcttatt catcaattaa caacacccga aggcgaagta agaatctacg
      241 atgcaagtta ccctcaattc gaggtaaacc ccgtagaaaa agaagatgga attgatctta
      301 ttccttctct tgaaacacac ggtgcaggtg tagctggtat tattgccgct caagcagata
      361 aaactcttgg tgatggctat agtggtggta ttgcaaaggg agctgagctt tatgttgcaa
      421 cgaagtcata taaacgaact ttagaaaaag ttattcaaga tgctaagaaa gaattagaaa
      481 atgcaaaaga cgaagaggat gaaaaaacgc caagtctgga tcaaatggca aagaatgact
      541 tattagcaag caaagaaaaa gaaatggcaa ttgaacgtgc tgaatgggca tccgggctga
      601 ataaattact agataataat gtttttgcaa tcaataatag ttggaatcct ttttctatta
      661 gcgatgacat caatgttgta gataaatttt atcaatctat caagcaaaat aagcacaatc
      721 cgctacttca agctattatg agagccaaaa atagcaacac cttattagtc tttgctgctg
      781 gtaatgagag caagaaacag ccaggcgtaa tggctcttct accacgttac tttcccgagc
      841 ttgagaaaaa tttaatttct gccgttgcgg tagataaaga acaaaaaatt gcttcatact
      901 ctaaccactg cggagcaagt aaaaactggt gtgtagcagc accgggcgat ttacatgttt
      961 taattggcgt tgctgatgaa cataaaaaac cacaatatgg cttaacaaaa gagcaaggta
     1021 cgtcattttc agcacctgct ataactgctt cattagcagt attaaaagaa cgctttgatt
     1081 atctgactgc gactcaaatt cgcgatactt tattgactac cgccactgat ttaggtgaaa
     1141 aaggggtcga taatgtttat ggctggggtc tcattaacct gaaaaaagct gttaatggcc
     1201 caactcaatt cctaaatgat gaaacgatta ccgtaactcg tgatgaccat tggtcgaatc
     1261 cactcgccag ccaatttaaa attacaaaaa aaggggacaa atcactgcat ttagacggcg
     1321 aaaatcattt agatacggta gcagttgaag aaggtagatt ggccttaaac ggtaaaacta
     1381 aggtgaaaac aatcagtaac catgcaaatt tagctgtcaa tggaaccgaa gttgagcaaa
     1441 attattcttc gtctggacaa agccaattag aagtgttggg caaatctggg ctaattgcca
     1501 atgctcaagc caatatacat ttagccggct cgttaaaaat tgatgataaa ttaacagaaa
     1561 aaaccgaagc aggtgatgtt tcagcgaccg tagtacagtt gaaagataaa gcaacttatc
     1621 aaggcggatt tacacaatta gtcgaaaacg agaatttagc caaacgaggg ttaatccaag
     1681 atctctattt caaagagagc gaaattatcg caaaagtgaa taagccacta actgatgaga
     1741 aagccgatac aaacgggcaa gccggtttag cattattaaa tgcgttaaga actacaccta
     1801 ttgcctatcg ccgtagttgg tataacggtt ggctgcaatc tgcactcgaa caacgtaaat
     1861 tagataatct gcactatgct gtatctaaca atatttatgc agatagcctt gaattgctac
     1921 gtagccaaaa tgccaaaggc ttaacccaag cacagcaaca tttgtttacg gcataccata
     1981 caccactgca aacgactgtt tgggctgaac atttgaatca aaaacaatca gcctcatcga
     2041 agcataccga tgttaaacac caccaatcac aattgggagt aaaccacaaa ctggcagata
     2101 aaacggtact tagtgcaaca ctttcacagc aaaaaaaccg cttagaaaaa ccatttgcac
     2161 aagctacctt aaaacaaaca gcattaaata ttggcttacg ttatcattta gataacgctt
     2221 ggtttagtga agctacattg caatttgctc gccagaaata tcaacaaagc cgtcgatttg
     2281 ctagccatca actaggtact gcagaaacca gaggttcaac gctcggtggt gaaatgcgga
     2341 tcggttatca atttatgcca aaccaatgga taattgaacc aagccttggc gtacaatgga
     2401 ttcaaaccaa aatgaatggt ttaaatgaaa gtggcgaact tgcgactcaa acggctgcaa
     2461 tgcgttatcg tgatgtgaat attgttccaa gcgtgaaatt acagcgaact ttccaacttg
     2521 agcaaggctc tatttcccct tatatcgggc taaattactt gcatagatta aatggaaaaa
     2581 taaccaaaat taccagtaac attgcaggaa aaacactgca tagtgaagca acgacgaaac
     2641 gtaatcgcca attaaacggc gaagtcgggg tgaaactgca ttataaaaat tggtttactg
     2701 cgatgaattt agattacagt cgagtgaaat ctgcaaacct atttggttgg aaagtaaatg
     2761 ttggctttag tttctaactt attatggtgg gacacaagcg gttaatttag ggtgaaaatt
     2821 tgcaaatttc actctatttt caaccgcttg agagaaaaaa ccttgaacaa ctgttcaagg
     2881 tttttgttta gtgttctatg actaaataag aaaaaactta ttgcttacgg acaaataagg
     2941 taattccctc cactttctgg acttcaatct tatctgctac ttgtaaatta ttacctataa
     3001 cacgccaagt cgtatcacca aattttcctc gagcgatgcc attaggtaag atttcaacca
     3061 caaagccttg agctcctagc atagcatgct ctcgagagtt aagggaactg ctctgatcct
     3121 ctttcttgtc ttttccatgc tgatatttcc accaaataag actaaaaata gtcgcaatta
     3181 tcgcaaataa cgcaatttgt aacgcttgcc ctaatgtaaa aagtgcaacg atgaaagcaa
     3241 gaataagcga ggcaaatccc caccacataa taaagacacc cggtaatact aattctaatg
     3301 caagtagtac aaagcctaat atgctccagc caatccaatt aaaaaaccag tccatactcc
     3361 ctccatatac tcaattaatc cggttttagg ctatgagctt gttttattgc tttttaaaat
     3421 ttcagcaata ccagcaacag aaccaatcaa atttccagct tctaacggca taagtacaac
     3481 tttactgtta tctgaagaac ctatttcttt caaagcttcg gtgtattttt gtgcaataaa
     3541 atagttaatc gctgtagtat cgcctttagc aattgcttca gaaaccattt gagtggcttt
     3601 agcttccgct tctgcggctc gttcacgagc ttctgcctgt aagaatgctt cttgtctttc
     3661 accttctgct tttaaaatac gagattgttt ttccccttca gcccgcagaa tttcagcttg
     3721 tcgaatccct tctgcttcaa gaatatcagc acgtttatta cgctcagctt tcatttgagc
     3781 gttcattgcc gcaaccagct ctttcggtgg acgaacatcc cgaatctcaa tacgggtgac
     3841 ttttactccc caaatattag tcgcctcatc gacaatggaa agtaatctac cgttaattaa
     3901 atcacgctga gagagcatat catctagatc catagagccg agcacggtac gcatatttgt
     3961 catggttaaa ttaacaattg cttgctctaa atgattcact tcataggcag ctcggcgagc
     4021 atcaactgtt tgaacaaaac atacagcatc aatcgcaaca cttgcattat cacgtgaaat
     4081 aacctcttgc gatggaatat ctaaaacttg ctccatcata ttcatttttc gcccaatacg
     4141 atcaataaaa ggtacgacaa tgttcaaccc cgggcttagc gttttagtat aacgaccaaa
     4201 acgttctact gtccaatgat agccctgtgg cacaatttta atagtcgaac ttaatgcaac
     4261 taaaacaagc acaacaaatg caatactaac aatcggtaaa tcaaaattca tcgtttgctc
     4321 cttaaactaa tgtgttgaag aataactaac gtctactgat aattgccaat taattgggga
     4381 tattccttga gaaatcaagt agttattggc tttagaaaaa tgtttacaac caaaaaatcc
     4441 acgatatgcg gaaagtggtg atgggtgcgg agaagctaac acacaatggc gattacgatc
     4501 gataaattgc ccctttctct gagcgtggct tccccaaagt agaaagacta aattatcacg
     4561 gtgttgattt aattgtgcga tcactttatc ggtaaaaatt tcccaaccaa tttgtgaatg
     4621 cgaaccggct ctaccttgct caaccgttaa gctggtgttt aacataaata ccccttgttt
     4681 tgcccagtca attaaatagc catgcggtgg aatttgaaat ccttcaatat cttcagataa
     4741 ttctttatac atattgacca gagaaggtgg cggggcaacc ggcggtttaa ctgaaaaggc
     4801 taatccgtgg gcttgatttg ggccgtgata aggatcttgc cctaaaatta ctactttcac
     4861 gtcactaaat tcggttaagg caaaagcact aaacacctcg ttttgcggag gatagatgac
     4921 tttgccggct aatcgttcgt tatgtacata ttgtaaaatt tgttgaaaat acgctttttg
     4981 tttttcttcg cctaaagctt ctgtccaagt tttcataaaa ccaccaagtg tatatttttt
     5041 acccaaccaa ctcaatcatg tctaaaaatg gttaaatttt tatcgctttt tatctaaaaa
     5101 ggggtacaat aacttcaaat aaatt
//
LOCUS       DANLZD010000155         5080 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.156, whole genome shotgun sequence.
ACCESSION   DANLZD010000155 DANLZD010000000
VERSION     DANLZD010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5080
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.156"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(45..596)
                     /locus_tag="PXE26_002254"
     CDS             complement(45..596)
                     /locus_tag="PXE26_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594798.1"
                     /translation="MKGIMKSILVFSTAVFLAACSSNKSGWTRLNDNDVDQKSYAIAY
                     GATAQTYADRVNESYDINSFMNGVNDWYTKKVTLPIEQIRAITINRMLDHNVYAYYSG
                     VIYAADLQANFNHLDPNCWGLVQPASMTQGIHDAMLDLQKNKVRGDEYIKNGVEQILH
                     LCVKTIAEDENESQSKGKTKKHK"
     gene            689..1540
                     /locus_tag="PXE26_002255"
     CDS             689..1540
                     /locus_tag="PXE26_002255"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005701564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HDL5594799.1"
                     /translation="MKQYLDLCNRIVSEGKWVANERTGKHCLTVINADLTYDVEKGEF
                     PLVTTRRSYWKAAIAELLGYIRGYSNAADFRQLGTKSWDANANENAQWLANPYRKGED
                     DMGLVYGAVGRNFPKPDGGSVDLLRQIVDDLKKGIDNRGEIYTFYHPGAFHMGCLRPC
                     LHSHHFSLLDGTLYLNSTQRSADVPLGLNWNMIQCYTFLALMAQITGHKAGQAFHKIV
                     NAHIYEDQLELMRDVQLKREPLNAPKLIINPDIKSLEDLETWVSLDDFKVEGYEYHPA
                     IQYPFSV"
     gene            complement(1594..2037)
                     /gene="lysM"
                     /locus_tag="PXE26_002256"
     CDS             complement(1594..2037)
                     /gene="lysM"
                     /locus_tag="PXE26_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein LysM"
                     /protein_id="HDL5594800.1"
                     /translation="MGLFDFVGDIGRKLFNKEEDASKAVTEHLAEDNPGVENVNVTVE
                     NGVAKISGIASTAAAVEKAVLMAGNVAGITEVNIDEVTLPDDVQLASDDELYVIQKGD
                     TLWEIATKAYGNGAKYKAIVEANKEVIKDENKIFPGQKIRIPKGL"
     gene            2276..2713
                     /locus_tag="PXE26_002257"
     CDS             2276..2713
                     /locus_tag="PXE26_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HDL5594801.1"
                     /translation="MKQVQFYLLSQADAAELSAAEMQACELAAQAWRLGKRVLIACET
                     EQQALNIDEALWARDPDSFVPHNLSGEITTYPTPIEISWKGKRNAQRRDLLISLQTQL
                     PEFIGSFTQIIDFVPVEETAKAQARDRYKQYRQLGWQLETIQC"
     gene            2707..3150
                     /locus_tag="PXE26_002258"
     CDS             2707..3150
                     /locus_tag="PXE26_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5594802.1"
                     /translation="MLKNLSWRAKRFDELSTQELFEIYHARTAVFVVEQNCPYQEVDN
                     KDLQAVHFFTKNAKNLTAYCRLIPANDGVHIGRVLVVKENRGSGLARELVQKAMDYCG
                     EHFPAQPIHAQAQSYLQGFYESFGFKAVSEVYLEDGIAHLDMVLE"
     gene            3147..3890
                     /locus_tag="PXE26_002259"
     CDS             3147..3890
                     /locus_tag="PXE26_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HDL5594803.1"
                     /translation="MNKLAKIEQLKTALSQRRPLSESEVQRLREEFIIESSYNSNAIE
                     GNTITLRETVLILKEGMTIAEKPIREHLDIIGFKDAFNYIYELVANKEPLSERAIKDI
                     HSLVLMGNAESRGVYRKIPVRILGAENAPPPYLIAEEMQLLIEKYQQKLTALHPIEAI
                     SWLHLAFESIHPFIDGNGLTGRLLINFELLKQGYLPIDIKFTNRAQYYQCFDDFHKNQ
                     QDISSLVELISQYELAELERYLAILKQRT"
     gene            3892..4062
                     /locus_tag="PXE26_002260"
     CDS             3892..4062
                     /locus_tag="PXE26_002260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594804.1"
                     /translation="MTSREELLKKQRELDILFTAWFEEKKKHEVLTYRRENGDLIQHY
                     PDGTEKVIEYAQ"
     gene            4052..4645
                     /locus_tag="PXE26_002261"
     CDS             4052..4645
                     /locus_tag="PXE26_002261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594805.1"
                     /translation="MHNNLAIFYCGTNGAGKSTLRSFNQDKVEIVIDSDNIAMQINPL
                     NPRLADIEAGRKAIELFQFAVKNQVAFSMESTLSGKSILKRMENAKAGYFKTRLNYIG
                     VDSYKINIARVKARVKAGGHFIDEETIRKRYHISRENLIEAIFINDETLIYDNSETKP
                     NLILQIADKKVIKISDKIPNWCNQLCDELVELGFKTT"
BASE COUNT         1635 a          995 c          964 g         1486 t
ORIGIN      
        1 gcggtaaaat tttttaaaaa ttttaccgct tgtcatagct taacttattt atgctttttg
       61 gttttacctt tagattgcga ttcattttca tcttcagcaa tcgtttttac acaaaggtgc
      121 aatatttgct caaccccatt tttgatatac tcatctccac gaactttgtt cttctgtaaa
      181 tctaacatcg catcgtgaat gccctgggtc atactcgctg gttgaacaag cccccaacaa
      241 ttaggatcta aatgattgaa atttgcctgc aaatctgcgg cataaatcac accactataa
      301 taagcataca cattatggtc taacattcga ttaatcgtta ttgctctaat ttgctcaatt
      361 ggcaatgtaa cctttttagt gtaccaatca tttaccccat tcataaagga attgatatca
      421 tagctttcat ttactctatc cgcataagtc tgagccgttg caccataagc aatagcataa
      481 gatttctgat caacatcatt atcatttaaa cgtgtccaac cgcttttatt cgatgaacaa
      541 gctgctaaaa aaacagcggt ggaaaaaacc agaatggatt tcattatacc tttcatatcc
      601 ataactcctt attgtgttgt gtcataaagt tttagctatt ttaccgaata aatggcaaaa
      661 ttacctaaaa ttttttatga ggtaaataat gaaacagtat ttagacttat gtaaccgcat
      721 cgttagcgaa ggcaaatggg ttgcaaatga acgtacaggc aaacactgcc tcacagtcat
      781 taatgctgac ttaacttatg acgtagaaaa aggagaattt cctttagtta ccactcgccg
      841 tagttattgg aaagctgcga ttgccgaact tttaggctat attcgaggct atagtaatgc
      901 tgctgatttc cgtcaattag gcacaaaatc gtgggacgct aatgcaaatg aaaatgcaca
      961 atggcttgct aatccctatc gaaaagggga agatgatatg ggcttggttt acggcgcagt
     1021 agggcgtaat ttcccgaaac cagacggtgg ctcagtcgat ttattgcgac aaattgtgga
     1081 cgatttgaaa aaaggaattg ataaccgtgg tgaaatttat accttctacc accccggcgc
     1141 tttccatatg ggctgcttac gtccttgttt acacagccat catttttctc tacttgatgg
     1201 cacgctttac ctgaatagta ctcagcgttc ggcagatgta ccgcttgggt taaattggaa
     1261 tatgattcaa tgctatacct ttttagcttt aatggctcaa attacagggc ataaggcagg
     1321 acaagcgttc cataaaattg tcaatgcgca tatttatgaa gatcaactag aattaatgcg
     1381 tgatgttcaa cttaagcgag aaccactcaa tgcacctaaa ttaatcatta atcctgatat
     1441 aaaatcctta gaagatttag aaacttgggt gagcttagat gatttcaaag ttgaaggtta
     1501 tgaataccac cctgccattc aatatccatt ttcagtctaa caccacctac aaaaagagct
     1561 aaactttcga ccagcttagc tctttcaatt tgattataaa cctttcggga tacgaatttt
     1621 ttgccctggg aagattttat tttcgtcttt aataacttct ttatttgctt ctacaatcgc
     1681 tttatatttt gcaccgttac cataagcttt tgtggcgatt tcccacaacg tatccccttt
     1741 ttggataaca taaagctcat catcacttgc aagttgcacg tcatcaggca aggtcacttc
     1801 atcaatattt acctcagtga taccagccac attacccgcc atcaataccg ctttctcaac
     1861 agctgctgcg gttgaagcaa tgcctgaaat tttcgctacc ccgttttcaa ccgttacgtt
     1921 tacattttca acgcccggat tgtcttccgc caaatgctct gtaaccgctt ttgaagcatc
     1981 ttcttcttta ttaaataatt tacgaccaat gtcgccaaca aaatcaaata agcccatagt
     2041 aagttcctta taaaatagct aaatgaagtg ggtattctac acaatttcca actattgaaa
     2101 tagtgcattg ttctcttaga acgtctaaaa gctaattagt tcctcaaggc aacgcaacac
     2161 aagtggtcat tttttctcaa ttttttgcaa aaacaaacgc ttagatttta tattttactc
     2221 attttcagct agaatattaa gtttaaatat ctgattgaat ttctgggaac attctgtgaa
     2281 acaagtacaa ttttatctat taagccaagc cgatgcagcc gagctttccg ctgctgaaat
     2341 gcaagcctgc gaacttgcgg ctcaagcgtg gcgattaggt aaacgggtac tgattgcatg
     2401 cgaaaccgag caacaagcgt taaatattga cgaagcactt tgggcaagag atccggattc
     2461 gttcgtgccg cacaatttat cgggagaaat caccacttac ccaacgccta tcgaaatttc
     2521 gtggaaaggt aaacgcaatg ctcaacgtcg ggatttgttg atttcactcc aaacccaact
     2581 ccccgaattt atcggcagtt ttacccagat tattgatttc gtgccggtgg aagaaaccgc
     2641 caaagcacag gctcgtgacc gctataaaca ataccgccaa cttggttggc aactggaaac
     2701 gatacaatgc taaaaaacct ctcttggcgc gcaaaacgct ttgatgaact ctccacccaa
     2761 gagttgtttg agatttacca cgcacgtaca gcggtgtttg tggttgagca aaactgccct
     2821 taccaagaag tcgataataa agacctgcaa gcggtgcatt tctttacaaa aaatgcaaaa
     2881 aatctgaccg cttactgccg tttaattcca gccaatgatg gtgtgcatat aggtagagtg
     2941 ttggtggtga aagaaaatcg tggctcaggc ttagcaaggg aattggtaca aaaagcgatg
     3001 gattattgtg gcgaacattt tcctgctcaa cccattcacg cccaagccca aagttacctg
     3061 caagggtttt atgaaagttt tgggtttaaa gcggtttcag aagtgtattt ggaagatggg
     3121 attgcgcatt tggatatggt gttagaatga ataaattagc taaaatcgaa caattaaaaa
     3181 cagcactttc acaacgccgt ccattatctg aaagcgaagt tcaacgactg cgggaagagt
     3241 ttattattga aagcagctat aattccaatg caattgaagg caataccatt actttgcgtg
     3301 aaacggtgct cattttaaaa gagggaatga ccattgccga aaaaccgatt cgggagcatt
     3361 tagatattat cggttttaag gatgcattca actatattta tgaattagtc gccaataaag
     3421 aaccattaag cgaacgagcg attaaagata ttcattctct ggtattaatg ggcaatgcgg
     3481 aaagccgagg ggtttatcgc aaaattccag tacgaatttt aggggcagaa aatgcccccc
     3541 ccccttattt aattgccgaa gaaatgcaat tattgattga aaaatatcaa caaaaactga
     3601 ccgcacttca tcccatagag gcaatcagtt ggctgcattt agcctttgaa agcattcacc
     3661 cttttattga tggaaacggg ctcacagggc gattactgat taattttgaa ttattaaaac
     3721 agggctattt accgattgat attaaattta ccaatcgagc ccaatattac caatgttttg
     3781 atgatttcca taaaaatcaa caagatatta gtagtttggt tgaattgatt agtcagtatg
     3841 aattagctga gttggaaagg tatttggcga ttctgaaaca gaggacataa aatgacaagt
     3901 cgtgaagaat tactgaaaaa acaacgtgaa ctggatattc tctttacagc atggtttgaa
     3961 gaaaagaaaa agcacgaagt gctgacgtat cgccgagaaa atggggattt aattcagcat
     4021 tatccggacg gtacggaaaa agtgattgaa tatgcacaat aacctagcaa ttttttactg
     4081 tggcacaaac ggagccggca aatctacttt acgttctttc aatcaagata aagtcgagat
     4141 tgtgattgat tccgataata ttgcgatgca gattaaccca ctcaatccaa gattggccga
     4201 tattgaggcg ggcagaaaag caatcgaact atttcagttt gcagtaaaaa atcaggttgc
     4261 attttcaatg gaatcaaccc tctcgggtaa atctattcta aaacgaatgg aaaatgccaa
     4321 agcaggatat ttcaaaactc gattaaatta tattggtgtc gatagctata aaattaacat
     4381 cgcacgggta aaagcaagag tgaaagccgg cggacatttt attgatgaag aaaccattag
     4441 aaaacgctat cacattagcc gtgaaaattt aattgaagcg atttttatca atgatgaaac
     4501 actgatttat gataattcag aaaccaagcc gaatttgatt ttgcagattg ctgataagaa
     4561 agtgataaaa atttcagaca aaataccgaa ttggtgtaat cagctttgtg atgaattagt
     4621 ggaattaggg tttaaaacca cctagcacga gccgtgctag gctcgacaat cccagctcct
     4681 ttggagctgt aacttagagc cacaaagtgg ctcagctatg cgtaacccca cacggcttgt
     4741 gtgtgggtga caagctgtcg gattaaagaa aaactttgca aaaaacttct cgaaacagac
     4801 cgcttatgcc tatctctgat aggttcttaa ataaataagc tctcgtcgaa gacgatcacc
     4861 atcggggata ttggaacaaa aacacaaaga tgaaacagaa taggaaaaag tctaaaaaag
     4921 ttattggtac tcataaaaaa gagaatggct taaaacagtt cataaaaaat aacaaaattc
     4981 ctattattct tatatctgcc atatggagta tcttcacaac tgatatttta gaacgcatcg
     5041 caaacatgcc tattatttgg aaaaatttcg aggagaatta
//
LOCUS       DANLZD010000156         5079 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.157, whole genome shotgun sequence.
ACCESSION   DANLZD010000156 DANLZD010000000
VERSION     DANLZD010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5079)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5079)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5079
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.157"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(1541..1936)
                     /gene="rpsI"
                     /locus_tag="PXE26_002262"
     CDS             complement(1541..1936)
                     /gene="rpsI"
                     /locus_tag="PXE26_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HDL5594806.1"
                     /translation="MTAANQNYGTGRRKSSSARVFIKPGSGNITINQRSLEVYFGRET
                     ARMIVRQPLELVELTDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAA
                     GFVTRDARRVERKKVGLHKARRRPQYSKR"
     gene            complement(1953..2381)
                     /gene="rplM"
                     /locus_tag="PXE26_002263"
     CDS             complement(1953..2381)
                     /gene="rplM"
                     /locus_tag="PXE26_002263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HDL5594807.1"
                     /translation="MKTFVAKPETVQRDWYVVDATGKTLGRLATELARRLRGKHKPEY
                     TPHVDTGDYIIVINADKVAVTGKKQTDKIYYWHTGYVGGIKDATFKEMIARRPEAVIE
                     IAVKGMLPKGPLGREMFRKLKVYAGSEHNHQAQQPQVLDI"
     gene            2680..3075
                     /locus_tag="PXE26_002264"
     CDS             2680..3075
                     /locus_tag="PXE26_002264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcB family protein"
                     /protein_id="HDL5594808.1"
                     /translation="MEQWTTDVWAAIMAAFIVGAVIGCTLVRVFNSSVRKQHELEKEL
                     KQTKTQVDEQKQKLEQHFEQSAQLLSSLASDYKKLYTHLAQSSEKLLPEASKNITFFQ
                     QTKLPIPAEKTEEDQPRDYSEGSSGLLKS"
     gene            complement(3236..4807)
                     /gene="guaA"
                     /locus_tag="PXE26_002265"
     CDS             complement(3236..4807)
                     /gene="guaA"
                     /locus_tag="PXE26_002265"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HDL5594809.1"
                     /translation="MTNIHHHKILILDFGSQYTQLIARRVREIGVYCELWAWDVTEEQ
                     IREFNPTGIILSGGPESTTEENSPRAPEYVFNAGLPVLGICYGMQTMAMQLGGLTETS
                     DHREFGYASVALKSADQLFANLNDDLTACEPKLDVWMSHGDKVTKLPPHFTITGVTPT
                     CPIAAMSDESRRFYGVQFHPEVTHTKQGLALLKNFVVGICGCETNWTAENIIEDAVKR
                     IREQVGDDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG
                     NKFGLNIVRVNAEDRFLEALKGLDEPEAKRKTIGKVFVDVFDDESKKLSSVKWLAQGT
                     IYPDVIESAASKTGKAHVIKSHHNVGGLPDYMKLGLVEPLRELFKDEVRKIGLALGLP
                     AEMLNRHPFPGPGLGVRVLGEIKKEYCDLLRKADAIFIEELHKAGWYYKVSQAFTVFL
                     PVKSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDLLGKISNRIINEVNGISRV
                     VYDVSGKPPATIEWE"
     gene            complement(4824..>5079)
                     /locus_tag="PXE26_002266"
     CDS             complement(4824..>5079)
                     /locus_tag="PXE26_002266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594810.1"
                     /translation="PSYSGETTASPLLKLDTERNINLYFQAIHKCTPDKIHTKIINIP
                     SEGNAKELWTATGCNKTQSFIITYRNDGVGGTFINMTTTP"
BASE COUNT         1375 a         1149 c         1010 g         1545 t
ORIGIN      
        1 tcaaccgctc ttgtaaccga ttgggttaaa gagtcgagcg ctaggttatg atgagcctaa
       61 cgctcatttc tttaatttgt ttttgtacct attcaacatt gtattccttg ataacattca
      121 atttctcttc tgttatctac aatctctttc ggtgttaccc ttaaaggaaa cgctattcat
      181 cttacgatga aagaccagtt agaagtctgc accctttcgg gttaggctat gtttcacacc
      241 ctatctatgc cattacagca tagcattcgc tttttctaac ctcccttacc tgcattccca
      301 acagtatcgc ttacgcttta cttgcctttt cctcttttac cttcgccatc tatttcaaac
      361 ggtttgagta ttgtgggcaa ggcagaaata caggcttacc aagttccatt actatcacac
      421 gagtagtgaa gatacagtct ctcccccgac agtgctttga tggcgtatcc tcacgttaaa
      481 gaagaataac cgactgccta ccttttggtc agagcctatc aatagctttg gctctctctc
      541 gataacgagg tttatcaact gttcacttac gtttatcttt ctacccagtc tagccccttg
      601 aaggtgtgct attcactttc tcccaatgtc ctctcacgat ttcattgact gattttcatc
      661 aggggttcat tgtcaggaag ctccgcacca caccgttacc ggtgtcgcac tatccctaga
      721 ctactgttag ccatataaca ggttacctta tcattccctc cgtactactc atatcttcgg
      781 attgtttgac cgtaacaatg acagtaatag cttacgcata cttactaagt cagtatccta
      841 tactgcataa ataagttcga acctttacaa aataaattca cttatgcgac taaagtcgct
      901 ttgtctatat ccaaattttc ccgcaaatag cctataacct gtccaatagg cgaaggtagc
      961 taaccctagc taatgtgagt attagaggtg attttaacga gaatttaagg tataattatc
     1021 cctagctcat aaaaacgaat aaacaagagt ttatccttag tgtttttatt cactattgag
     1081 gagcattcta cgattaccgt agattgcgag tgtgaaaagt ataagtaaag atggcactcc
     1141 ttccctaaga tttaccaagt cttagttctg atgtcttttc tgagtgctga ggcgatctat
     1201 tggactttat ttatagtagg tgttgtaaat tttctctgct ctggggtatg ggtaactccg
     1261 gtctgcggat cttgctttct tactctatct tggtattaag aaaaaaacca agtacatcaa
     1321 agtgaagatc ataccttaca gcctttcgag ttggttcatt tactttccca acttagaaca
     1381 agagtgcttg ggcaaagccc cttttctctt gcctgtcttt ccaagcactc cgaagagtgc
     1441 ttggaaagtc ggaagcaggt gataagaata ccacccactt ccagcaataa ctccttgata
     1501 tataaggagt tattgccata agtacgacaa cttgtcgcac ttaacgtttt gagtattgtg
     1561 gacgacgacg tgctttgtgt aaacccactt ttttacgttc aacgcgacgt gcgtcacgag
     1621 taacgaagcc tgctgcacga agtgctgggc gtagcgtttc atcgtattcc attaatgcac
     1681 gagtgatacc gtgacggatt gcacccgctt gaccagaaat accaccacct ttaacagtga
     1741 tgtaaaggtc taatttatca gttaattcaa ccaattctaa cggctgacgt acgatcatac
     1801 gagctgtttc acgaccgaag taaacttcaa gtgaacgttg gttgatagta atgttacctg
     1861 aacccggttt gataaataca cgggctgaag agcttttgcg gcgacctgtg ccgtagtttt
     1921 gatttgctgc tgtcattttt atgctccgtg aattagatat ctaaaacttg tggttgttgt
     1981 gcttggtgat tgtgttctga acctgcgtaa acttttaatt tacggaacat ttcacgacca
     2041 agtggacctt ttggtaacat acctttcact gcgatttcaa tcacagcttc aggacgacga
     2101 gcaatcattt ctttgaaggt tgcatctttg atgccaccta catagccagt gtgccagtag
     2161 tagattttgt cagtttgttt tttacctgtt actgctactt tgtctgcatt gatcacgatg
     2221 atgtaatcac cggtatcaac gtgtggagtg tactcaggtt tatgtttacc acgaagacgg
     2281 cgtgccaatt cagtcgctaa acgacctaat gttttacccg tcgcatctac tacataccag
     2341 tcacgttgta ctgtttctgg ttttgctaca aaagttttca ttaattaaat accaaattta
     2401 aagtttaaaa cccaatacct cattgaggta tttcctatta ttttacggtg aacccgaccc
     2461 cttcgagtct gattcagacc aaacttgtgt ggcggggaaa accacacaaa aacagggtgg
     2521 cgaaattata cagagatttc actcaaaaat ctaacatttt ttgctgataa tctttcaaaa
     2581 ttgaacctat atcacatttt aatcatttgg agcttttcaa ataaaaactg aaatgttaaa
     2641 aatagcagta atcaatcact aaaacataag gagtttatga tggaacaatg gacaacagat
     2701 gtttgggcag ccattatggc agcatttatt gtaggtgctg taataggttg cactctagtt
     2761 agagtattta acagtagtgt cagaaaacag catgaactgg aaaaagagtt gaagcaaacc
     2821 aaaactcaag tggatgagca aaaacaaaaa cttgaacaac actttgagca atcagcccaa
     2881 ttactttcaa gtctagcttc tgattataaa aagctttata cccatttagc acaaagctct
     2941 gaaaagctat taccagaagc atcaaaaaat attacctttt tccaacaaac caaattacct
     3001 attccggcag aaaaaacgga agaagatcaa cctagagatt attccgaagg ttcatctggc
     3061 ttactgaaat cataaaacta aaaattgaat atttagtttt actaaaaggc acttagttta
     3121 aggattgatt ccgttggaat caatccttta ttctaaaccg ctacattaag cagttaacaa
     3181 catttttcag ctttagatac tgaacttagg ttataagaag cctattttgt aagagttatt
     3241 cccactcaat ggttgccggt ggttttccgc tcacgtcata caccacacgg gaaataccgt
     3301 tcacttcgtt aataatgcgg ttggagattt tgcctaatag atcatacggc aagtgcgccc
     3361 agtgagcggt cataaagtcg atggtttcca ccgcacgcag gctgacgacc cagtcatatt
     3421 tgcgtccatc gcccattacg cccaccgatt tcaccggcaa gaataccgtg aaagcttggc
     3481 tgactttgta gtaccagccg gctttgtgca gttcttcgat gaagatcgca tcggctttac
     3541 gcagtaaatc gcagtactct tttttgattt cgcccagcac acgcacgcct aagcccgggc
     3601 cggggaacgg gtggcggttg agcatttcag ccggtaagcc gagtgccaag ccgattttgc
     3661 gcacttcgtc tttaaacaat tcacgcaacg gttcgactaa gccgagcttc atataatccg
     3721 gcaagccgcc aacgttatgg tgtgatttaa tcacgtgggc tttgccggtt ttgctggcgg
     3781 cggattcaat cacatcaggg tagatcgtgc cttgtgcaag ccatttgacc gagctaagtt
     3841 ttttgctttc gtcatcaaac acgtccacaa acactttacc aatggttttg cgtttagctt
     3901 ccggttcgtc taagcctttt aacgcttcta agaaacggtc ttcggcattc actcgcacaa
     3961 tgttcaaacc gaatttgttg ccgaacattt ccatgacttg atcgccttcg ttcaagcgga
     4021 gcaagccgtt atccacaaat acgcagtgca ggtttttacc gatagcacga tgtaatagca
     4081 aggcggtgac ggaggaatcc accccgcccg acaaacctaa aatcacctcg tcatcgccca
     4141 cttgctcacg aatgcgtttc accgcatctt caatgatgtt ttctgccgtc cagttcgttt
     4201 cacagccgca aatgccgacc acgaagtttt tcagcaacgc caagccttgt ttggtgtggg
     4261 tcacttcggg gtggaactgc acgccataga aacggcggct ttcgtccgac atcgcggcaa
     4321 tcgggcaggt tggggtaacg cctgtgatgg taaagtgcgg tggtaatttg gtgactttgt
     4381 cgccgtgact catccacacg tccaattttg gctcgcaagc ggtcaaatca tcgtttaaat
     4441 ttgcaaaaag ttgatcggca gatttgagag ccaccgaggc atagccaaat tcacggtggt
     4501 cggacgtttc ggttaaaccg cccaactgca tcgccattgt ctgcattccg tagcaaatgc
     4561 ccagcactgg cagaccagcg ttaaacacat actccggcgc tcgtgggctg ttttcctcag
     4621 tggtgctttc aggacctcct gaaagaataa tccccgttgg gttaaattca cggatctgct
     4681 cttccgttac gtcccaagcc caaagctcgc agtaaacccc aatctcccgc acacggcgtg
     4741 cgataagctg agtatattgt gaaccgaagt ctaaaattaa aattttgtgg tggtggatgt
     4801 ttgtcattgt aatttccttt aaattatggc gttgtggtca tgttaataaa agtgccgcct
     4861 accccatcgt ttctatatgt aataataaaa gattgcgttt tattacaacc tgttgcagtc
     4921 caaagttctt ttgcattacc ttcacttgga atattgatga tttttgtatg aattttatca
     4981 ggagtacatt tatgtattgc ttgaaaatac agatttatat ttctttctgt gtccaacttt
     5041 aataaaggac tggccgttgt ttctcctgaa taagatggt
//
LOCUS       DANLZD010000157         4921 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.158, whole genome shotgun sequence.
ACCESSION   DANLZD010000157 DANLZD010000000
VERSION     DANLZD010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4921
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.158"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(98..1414)
                     /gene="argA"
                     /locus_tag="PXE26_002267"
     CDS             complement(98..1414)
                     /gene="argA"
                     /locus_tag="PXE26_002267"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HDL5594811.1"
                     /translation="MQNTELALAQWFRQSTPYVNMHRGKTFVIMLDGDVIESPNFVNI
                     INDISLLHSLNIKLVIVFGARPQINQLLKQNHIEPEYYHNIRVTNPQSLEYVKQAVGK
                     VHYDFFARLSLRLPHSEVINVVSGNMILAQPIGVVDGVDYTLSGKIRRINIESIKQQL
                     AQNSIVLLGPIAPSVTGEMFNLPFEDIATQVAIKLRADKLIGFCEEQGILDENGKPIP
                     DYLPQDGETLLQQLIERGEYHTPKARFLQAAITVCREGVKRSHLLSYKEDGSLLQELF
                     SRDGIGTQFSMESSEQVRIANSSDIPGLLDLIRPLEQQGILVKRSREQLEMEITNYTI
                     IERDGVVIACAALNPYPEEKMAEMACVAVHPDYRDSSRGDILLENIQKRAVQLGMEKL
                     FVLTTRTTQWFQERGFRLAGAQDLPRYKRENYNYQRRSKVLILPLW"
     gene            complement(1543..1728)
                     /locus_tag="PXE26_002268"
     CDS             complement(1543..1728)
                     /locus_tag="PXE26_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1508 domain-containing protein"
                     /protein_id="HDL5594812.1"
                     /translation="MYFEIYKDAKEEFRWRLKAGNHEVIATNQAYTTKQGCQKGIEAV
                     KKVTPETEVKDLTKAEA"
     gene            complement(1844..3166)
                     /gene="pepP"
                     /locus_tag="PXE26_002269"
     CDS             complement(1844..3166)
                     /gene="pepP"
                     /locus_tag="PXE26_002269"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HDL5594813.1"
                     /translation="MDLAYLAKMPQEEFTARRERVLEQMQDNSALLVFTESEKRRNSD
                     SEYLFRPDSYFWYLTGLAEPKSAVLLVKSEGKTESIIFVRKKDPLMETWNGRRLGIEE
                     APKTLQLNAAFDIDDIETVLAKKLENLTACYCALGIQEWGDNILFATFEKMKVNRQKV
                     PTTLIDWQPMLSEMRLIKSEFEIALIQQACHISSMAHIRAMKQARPNRYEWEIEGEIQ
                     HEFSRFGARFPAYNSIVAGGENACILHYNENDQVLKGGDLLLIDAGAEFAYYAGDITR
                     TFPINGKFSEPQKELYELTLTMQKEAINLLVPNSSIKAANDKAVQILTQGLVRLGILN
                     GDVESLIEQKAYRQFYMHGLGHWLGLDVHDVGDYGTERDRPLQIGMVLTVEPGIYIPK
                     DADVPEQYKGIGIRIEDNLLITEYGNKNLSSGCPKEIADVEQLMQSLN"
     gene            3382..3705
                     /locus_tag="PXE26_002270"
     CDS             3382..3705
                     /locus_tag="PXE26_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5594814.1"
                     /translation="MKLSSELQNQINQLNQLRKQALKQEQDEQKLFEKNKIEDLPHFG
                     TQLNAQRKLLGIELTTLEMQTGISSSTLKRLFKDPSQVKFQTICIVAETLGFNLCAIN
                     THKQE"
     gene            complement(3782..4800)
                     /gene="glpX"
                     /locus_tag="PXE26_002271"
                     /pseudo
     CDS             complement(3782..4800)
                     /gene="glpX"
                     /locus_tag="PXE26_002271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484632.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
BASE COUNT         1463 a         1116 c          855 g         1487 t
ORIGIN      
        1 gtaataattg ccatagcccc tttgatgggt tgatgttttt tcatagttct ccttttatag
       61 ttctcttggt aacaagcggt caaaaacatt gaatatttta ccaaagtggt aaaattaata
      121 ctttagaacg acgttgataa ttgtaatttt cccgtttata gcgaggtaaa tcttgggcac
      181 ctgccagcct aaatcctcgc tcttggaacc attgtgtggt tcttgtagtc agcacaaaga
      241 gtttctccat tcccagttgc actgcccgtt tttgaatatt ttccagtaga atatcccctc
      301 ttgaggaatc acgataatca gggtgaaccg ccacacacgc catttccgcc attttttctt
      361 ccggatacgg gttaagtgcc gcacaagcaa tcaccacacc atcacgctca ataatggtgt
      421 agtttgtgat ttccatttct aattgttctc gagagcgttt gactaaaatg ccctgctgtt
      481 caagtgggcg gattaaatcc aataatcccg gaatatcact ggaattagca atacgtacct
      541 gttccgagct ttccattgag aactgtgtgc caataccatc acgagagaat aactcttgaa
      601 gcaatgagcc atcttcttta tagcttaata aatgcgagcg tttcactccc tctcggcata
      661 ccgtgatcgc cgcctgcaaa aaccgagctt tcggggtgtg atattcgcca cgctcgatta
      721 actgctgtaa caaggtttcg ccatcttgcg gaagataatc tggaattggc ttgccgtttt
      781 catctaaaat cccctgctct tcacaaaaac cgattaattt atcggcacga agtttaattg
      841 caacctgtgt ggcaatatct tcaaacggca gattaaacat ttcaccggta acagacgggg
      901 caatcggacc aagtaataca atcgaatttt gtgccagttg ctgcttaatg ctctcaatat
      961 taatacgacg gattttaccg cttagtgtat aatctacccc atccaccacg ccaatcggct
     1021 gagctaaaat catattacca ctgactacat taatcacttc agaatggggt aaacgcaaag
     1081 aaaggcgggc aaagaaatca taatgaactt tccctaccgc ttgtttcaca tattctagcg
     1141 attgtggatt agtcacacgg atattgtggt aatactccgg ctcaatatga ttttgtttta
     1201 acaattggtt aatttgcggt cttgccccaa atacaatcac taatttgata ttcaggctgt
     1261 gcaggagact gatgtcattg ataatattga caaaattcgg gctttcgata acatcgccat
     1321 caagcataat cacaaaggtt ttgcctctgt gcatattaac ataaggtgta gattgcctaa
     1381 accattgagc taatgcgagt tctgtgtttt gcatatattt cctctttata atataaacgc
     1441 atattatctt ttttagaaaa atccgcaagc cttaaattga ataattaagc attatatttg
     1501 cataaataac aaagccctga aataatatca gggctttata gattatgctt cagctttggt
     1561 taaatctttt acttctgttt caggtgtaac ttttttaact gcttcaatgc ctttttgaca
     1621 accttgctta gtcgtataag cttggttggt tgcaataact tcgtggttac ccgcttttaa
     1681 acgccaacga aattcttctt ttgcatcttt gtaaatttca aaatacatat aaacactcct
     1741 tcgtgttgtg attgcccaaa cactgtgttt gtgtcgggtt agcttaagct aaattcccca
     1801 aaatatcaaa gcaagcggtc atttttttac aaaaatttgc gaattaattt aacgattgca
     1861 tcaactgctc aacatccgca atttctttag ggcaaccgct gcttaagttt ttgttgccgt
     1921 attcggtaat cagcaaatta tcttcaatcc gaatcccaat acctttatat tgctccggta
     1981 catccgcatc tttaggaata tagataccgg gttcaacagt taacaccata ccaatctgca
     2041 aaggacgatc ccgctccgtg ccgtaatccc ccacatcgtg aacatctagc cctagccaat
     2101 gccctaatcc gtgcatataa aattggcgat aggctttttg ctcaatcagg ctttccacat
     2161 caccgtttaa aattcctaag cgaaccaagc cctgcgtgag aatctgtaca gccttatcgt
     2221 ttgccgcttt aatcgagctg tttggcacaa gaagattaat cgcctctttt tgcatagtta
     2281 aggttaattc gtacagctct ttttgcggtt cggagaattt cccattaata gggaaggttc
     2341 gggtaatatc gccggcgtaa tacgcaaatt ccgcccctgc atcaatcagt aataaatcgc
     2401 cgcctttaag cacctgatca ttttcattgt agtgaagaat acaggcattc tcaccgccgg
     2461 caacgattga attatatgcc ggaaaccttg ctccaaaacg gctaaattcg tgttgaattt
     2521 ccccctcaat ttcccactca taacgattcg ggcgagcttg tttcatcgct cgaatatgtg
     2581 ccattgaaga aatatgacac gcctgctgaa ttaaggcaat ttcaaattct gatttaatca
     2641 accgcatttc cgataacatt ggctgccaat caatcaaggt tgtcggcact ttttgccgat
     2701 tgactttcat tttttcaaat gttgcaaaca aaatattatc gccccactct tgtatcccta
     2761 acgcacaata acaagcggtc agattttcta atttttttgc aagaacggtt tcaatgtcat
     2821 caatatcaaa agctgcgtta agctgtaacg tttttggagc ttcctcaatc cctaaacgtc
     2881 tgccattcca ggtttccatt aaagggtctt ttttacgcac aaaaataata ctttccgttt
     2941 taccttcgct ttttaccagc aatacggctg atttaggttc tgccaaaccg gttaaatacc
     3001 aaaagtaact atcaggtcta aacaagtatt cagagtcact attacggcgt ttttccgatt
     3061 cggtaaaaac caataacgca gaattatcct gcatttgctc aagcacacgc tcacggcgtg
     3121 cggtaaattc ttcttgtggc attttagcca aataagcgag atccattatt tctccttttt
     3181 attatatcta tatcgaaacc tgccttattt tagcacaaac gcagcataaa ttcagcctaa
     3241 ccaaaacaga tgaaagatta tatttgagat cttgattgca aaaacaaaac agattaagat
     3301 taaatataac ctttacatat ctaaacaggt tatatttaac ctatgaacac ataaataatc
     3361 tacttttagc tcaaaaataa aatgaaacta tcaagcgaac tacaaaatca gataaaccaa
     3421 ctaaatcagt tacgaaaaca ggcactcaaa caagagcaag acgagcagaa attgtttgaa
     3481 aaaaataaaa ttgaagattt gccacatttt ggcacgcagc ttaatgctca gaggaaacta
     3541 ttaggcatag aattaaccac ccttgaaatg caaaccggca tttcaagctc taccctaaaa
     3601 cgcttattta aagacccaag ccaagtgaaa tttcagacaa tttgtattgt ggcagaaaca
     3661 ctcggcttta atttatgtgc aattaatact cacaaacaag agtaagcgtg acaatgtagt
     3721 gattttgatt actttgggaa gacaaaaaat cgggctaaaa gcccgattta tcagagaaaa
     3781 gctataaatc caataaagaa aggagttcgt tatctttacg atcgacataa tggtcggatt
     3841 gaattttacg aatggttcta gatttgccac gaataagtaa ggtttcagtg ctggcaatat
     3901 tgcctctacg tttaatccct tttaacaatt cacctgaagt aatgccggtt gcaacaaaga
     3961 cgatattgtc atcacgcacc aaatcttcta atttcaacac cgtattcacc ggtacattca
     4021 tttcattaca gcgtaaaagc tctttttcgg tagcagttaa attttccggg ctattcccct
     4081 tcacttggtt gcgaggaatt aaacgtgctt gcatatcgcc acccaatgca cgaaccgcag
     4141 cccccgccac taccccttca ggtgctccgc cgataccata aagcagatcc aattcgctct
     4201 ctggcaaaca gcattgcacc gcagccgcaa catcgccatc aggaatcgca atcactctta
     4261 cccctaattt ttgcacatcg gcaattattt tttcgtggcg aggcttagca agatagcaat
     4321 ggttaattgg gaaagtaatt tgcccttttt cgaggcgaca cggcgaagat tttgttcaag
     4381 cggaagattt aaatcaatca ttcctttgca ttcctgcccc accactaatt tttccatata
     4441 catatcaggg gcttttaaaa aggtttcttt gccgcctgct gctaataccg acaacgcatt
     4501 tgcctgcccc attgcagtca tacgagtacc gtcaatcggg tcaaccgcaa tactgatttc
     4561 ctcatcttct aggcgggata gaccgatttt ctcgccaata taaagcatcg gtgcttcgtc
     4621 aatttcgccc tcaccaatta ccacttcgcc acggatttcc atttggttca gcataaaccg
     4681 cattgctttc accgcagctt catcagcggc atttttatcc ccacggccta gccaagagta
     4741 agctgctaga gccgctgctt ccgtaacacg agaaaattca aaagaaagag ttcgtttcat
     4801 ttttgttcct tagtttcttg aaagaaaaac tttaaaagaa gagagattat attttatcag
     4861 taacctgcaa gctacgttac taaaaaatca gcgtttgaat aaaaattcac aaatagccaa
     4921 a
//
LOCUS       DANLZD010000158         4860 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.159, whole genome shotgun sequence.
ACCESSION   DANLZD010000158 DANLZD010000000
VERSION     DANLZD010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4860)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4860)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4860
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.159"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            10..1092
                     /gene="serC"
                     /locus_tag="PXE26_002272"
     CDS             10..1092
                     /gene="serC"
                     /locus_tag="PXE26_002272"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HDL5594815.1"
                     /translation="MTEIYNFSAGPAMMPKKVLEKAQQELLNWLDQGTSVMEVSHRGK
                     LFMELAAQSEADLRKLYNVPDNYRILFLQGGARGQFAAIPMNLIGKKGKALYLNSGHW
                     SATAAKEARNFAEIDEINILETEPQLKVSRLDFSDIAEQYDYIHYCTNETISGVEIFD
                     IPNVGNTPLVADMSSNILARGIDINKFGVIYAGAQKNLGPAGITIVIIRDDLIGNARK
                     DTPSIWNYATQRDADSMINTPPTFAWYLCSLVFQHLLAEGGLKATEERNLAKATLLYE
                     YLDSSTFYYNTVAHENRSLMNVTFTTGNDELNAKFVAEATACGLQALKGHKVLGGMRA
                     SIYNAMPIDGVKALIEFMKVFEQRNA"
     gene            complement(1149..2126)
                     /locus_tag="PXE26_002273"
     CDS             complement(1149..2126)
                     /locus_tag="PXE26_002273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/sodium antiporter"
                     /protein_id="HDL5594816.1"
                     /translation="MTLAVAAIIGGLIILVWSADRFVEGAASTARHFGMTPLLIGIVV
                     IGFGTSAPEMLVSASSALSGSPGIALGNAYGSNITNIALILGLTAIIKPLSVNSDVLK
                     KELPILLAVTLLSAYLVYDANVTQLDAIILLAVFFVYMAWTIITAMKSKNDALSLDVD
                     AELTNSAKMGLGKSILWLIIGLVSLVISSQFLVWGAVEVAKFFGVSDLVIGLTIVAVG
                     TSLPELASSIAAARKGEVDLALGNIIGSNLFNTLAVVGIAGAIEPMQVSAEVFSRDVL
                     MMSALTFLLFIFGINLYRRTEGGRINRLEGLLLFAAYVGYNFYLFKTAG"
     gene            2238..4805
                     /gene="glnD"
                     /locus_tag="PXE26_002274"
     CDS             2238..4805
                     /gene="glnD"
                     /locus_tag="PXE26_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     uridylyltransferase/uridylyl-removing protein GlnD"
                     /protein_id="HDL5594817.1"
                     /translation="MMKNSNELKTLLSAFTEQQRQAFQSENVLSLLAQRSQFYDQLLQ
                     ALWQDFGLAQYEHITLLAVGGYGREEMFPLSDLDILVLTEKPLEEAIQQRLNELFALL
                     WDSKLQLGTSVRTLEECIQIGKAEISVATNMLEGRFLLGNKSLWLRLKEALYQPDFWD
                     IKAFFRAKMAEKNERYARYHNTSYNLEPDLKHSPGGLRDLHLISWIMLRHYGVSSFVD
                     LLNKGLLYPEEYKELIAAQAVLFRMRFALHLQLKRYDNRLRFDRQLQLSEILGYQGEA
                     NQAVELMMRDYFQATKSISQLSQLLLNSFEQAYVNELQKNAQKQPLDQYFYRQEQQLF
                     VVERKIFKTQPTTMLDLFFHLTNDPTLIANADTLRQLRLCLQQQHEPMCFLPEMREKF
                     VQLFAQPKVISRAIVPMHQLGFLSAYLPQWKGIEGLMQFDLFHIYTVDEHTVRVMLNL
                     ENFSEDPSRAFFPLCHQLFATLSEKPLLYLAALFHDIGKGREGEHAQVGALDMREFAE
                     LHGFSQAQINDMVWLVAEHLTMSITAQRRDIHDPQIISEFAKKVQNQTALSSLLCLTV
                     ADICATSESLWNDWKASLFTQLYQFTLQQLAQNLNYQAVAQEHRLQALELMKFVLSAD
                     ERIALNAFWQPCPERYFLHHTPTQLVWHALHYVKTRRLPMVLISNEYARGGTEIFVCC
                     QDQPQLFARIAQLLSQKRISIHDAQIITTENGVVLDSFIVSERDGDDDLTDERCMQIQ
                     QAMMKMLSLTETGIKFTKKPVKHLSFKRKTRLRFLPPSSKQQTEFELFTLDREGLLAQ
                     IGYIFNRLRLNLINAKITTIGERVEDFFVVSNDQGKALSEQEQLELKAILITELDSE"
BASE COUNT         1569 a          957 c         1008 g         1326 t
ORIGIN      
        1 aggtgaaaaa tgacagagat atataacttc agtgccggcc cggcaatgat gccgaaaaaa
       61 gtactcgaaa aagcgcaaca agaattatta aattggctag accaaggcac atcagtgatg
      121 gaagtcagcc accgtggaaa gctatttatg gagctggcgg cacaatctga agcagattta
      181 cgcaagctgt ataatgtgcc ggacaattat cgtattctat ttcttcaagg tggtgcaagg
      241 gggcaatttg cagccattcc aatgaattta atcggtaaaa aaggcaaagc gctttacctt
      301 aattcagggc attggtcggc aacagcagca aaagaagcac gtaactttgc ggaaattgat
      361 gaaatcaata ttttagagac tgaaccgcaa cttaaagtga gtcgtttaga tttcagcgat
      421 attgcagagc aatatgatta tatccattat tgcaccaatg aaaccatcag tggggtagaa
      481 attttcgata ttccgaatgt cggaaatacc ccgttagtgg cagatatgtc gtctaatatc
      541 ttagcccgag ggattgatat caacaaattt ggagtaattt atgccggagc gcaaaaaaat
      601 ctagggcctg ctggcattac gattgtgatt attcgtgatg atttaattgg caatgcacgc
      661 aaagataccc catctatttg gaattatgca actcagcgag atgctgattc gatgattaat
      721 accccgccaa cttttgcttg gtatttatgt tctttagtgt tccaacattt actggcagag
      781 ggtggtttga aagctactga agaacgtaat cttgctaaag ctacattgct ttatgagtat
      841 ttggatagtt caacattcta ttacaatacg gtagcacacg aaaaccgttc cttaatgaat
      901 gtaaccttta ccacgggtaa tgacgagcta aatgcaaaat ttgtggcaga agcgaccgct
      961 tgtggtttac aggcattgaa aggccataaa gtattaggtg gaatgcgtgc ctcaatttat
     1021 aacgcaatgc cgattgatgg ggtaaaagca ctcattgaat ttatgaaggt atttgaacaa
     1081 cgtaatgctt aattcaagct taagaatata aattaaagag ccacgtttgt ggctctttga
     1141 atttggcact agcccgcagt tttaaacaaa tagaaattat agcctacata agcggcaaag
     1201 agtaataagc cctctaaccg attaattctg ccaccttctg tccgacgata gaggttgatc
     1261 ccgaaaatga ataataagaa ggtgagagcc gacatcatca agacatcgcg agaaaacact
     1321 tccgctgaaa cttgcattgg ttctatagca ccggcaatcc ccaccacggc taacgtatta
     1381 aataagttag aaccgataat gttacctaaa gctaaatcca cttctccttt acgagcagct
     1441 gcaatagaag aggctaattc aggtagtgag gtgcctaccg ccacaatagt aagcccgatt
     1501 accaaatcac tcacaccaaa aaatttagcc acttcaactg ctccccagac taagaattgg
     1561 gaactaatta ctagcgatac taaaccaata attagccaaa gaatggattt tcctaatccc
     1621 atcttagcac tattggttaa ttctgcatca acatctaagc ttaatgcatc atttttactt
     1681 ttcattgcgg taataattgt ccacgccata tatacaaaaa acacagcaag taaaataatc
     1741 gcatcaagtt gagtgacgtt tgcatcataa accaaataag cagaaagcag ggtgacagcc
     1801 agtaaaatcg gcaactcttt ttttaacaca tcggaattaa ctgatagtgg tttaattatt
     1861 gcggttaaac ctaaaatcag cgcaatattg gtaatgttag aaccgtaggc attaccgaga
     1921 gcgatacccg gcgatccgct taatgcagaa gatgcagata cgagcatctc cggtgcagat
     1981 gtaccaaaac caatgaccac aataccgatt aacaatggtg tcataccaaa atggcgagcc
     2041 gtagaggctg ccccttccac aaaacgatcc gcactccaaa ctaatataat taagccaccg
     2101 ataatagcgg caacagcaag tgtcataaac tatcctttta gatgaaaaac ataaaggcat
     2161 tataagcatt ttagccaaaa taaatatagg caaacgaaaa taaatgacct attattttgc
     2221 cagtttagga agagattatg atgaaaaaca gcaacgaatt aaaaacgctt ttatcagcat
     2281 ttacggagca acagcggcaa gcatttcaat ccgaaaatgt actcagctta cttgcacaac
     2341 gtagccaatt ttatgaccaa ctactgcaag cactttggca agattttgga ctcgctcaat
     2401 atgaacatat taccctatta gcggtagggg ggtacggacg tgaggagatg tttccgcttt
     2461 cggatctgga tatcttagtg ttaactgaaa aaccgctaga agaggctatt cagcagcgtt
     2521 taaacgaact atttgccttg ctttgggaca gcaaactgca acttggcacc agtgtgcgta
     2581 cgctcgaaga atgtattcag attgggaaag cagaaatttc ggttgccact aatatgttgg
     2641 aagggcgatt tttattgggt aataaatcgc tttggctaag attaaaagaa gcactttatc
     2701 agccggattt ctgggatatt aaagcgtttt ttagagcgaa aatggcggaa aaaaatgagc
     2761 gttatgcacg ttatcataat actagctata accttgagcc agatctcaaa catagcccgg
     2821 gaggattgcg agatctgcat ttaatctctt ggattatgct acggcattat ggtgtatctt
     2881 cttttgtcga tctcctcaat aaagggctac tttacccgga agaatataag gagctgatcg
     2941 cagcacaagc ggtacttttt cggatgcgtt ttgcacttca tttgcaactg aaacgttacg
     3001 ataatcgcct tcggtttgac agacaattac aactgagtga aatattaggc taccaaggcg
     3061 aagcaaatca agcggtggaa ttaatgatgc gagattattt tcaagccaca aaatctattt
     3121 cgcaactgag ccaattattg ttaaacagtt ttgaacaagc ctatgtaaac gagttgcaaa
     3181 aaaatgcaca aaaacaaccg cttgatcagt atttttatcg gcaagaacag caattgtttg
     3241 tggtcgaacg caaaatattt aaaacccaac ccacaacaat gttggatctc ttttttcatc
     3301 ttactaatga ccctacgtta atagcgaatg ccgacacctt acgtcagttg agactgtgtt
     3361 tacagcaaca acacgagcct atgtgctttt tgcctgaaat gcgagagaaa ttcgtacagc
     3421 tttttgctca accgaaagtc ataagccgag caatagttcc aatgcaccaa ctgggttttt
     3481 taagtgctta tctaccgcaa tggaagggga tcgaagggct aatgcaattc gacctattcc
     3541 atatttatac agtcgatgag catacggtca gagtcatgtt aaatttagaa aattttagcg
     3601 aagatccaag tcgggcgttt ttcccactat gtcatcagct atttgcaacg ctttctgaga
     3661 aaccgttgct ctatcttgcg gctcttttcc acgatattgg caagggtaga gagggcgaac
     3721 acgctcaagt tggtgcgctg gatatgcgag aatttgcgga actacacggt ttttctcaag
     3781 cacaaatcaa tgatatggtt tggctggtgg cagagcattt gacaatgtcg atcaccgcac
     3841 aaagacgaga tatccacgat ccgcaaatca tcagcgaatt tgcaaaaaaa gtgcaaaatc
     3901 agaccgcttt atcttcacta ctttgtttaa cggttgcaga tatttgtgca accagtgaga
     3961 gcctctggaa tgattggaaa gcctcgctgt ttacccaatt atatcaattt acgctacagc
     4021 aactggctca aaatttgaat tatcaagcag tggcacaaga gcatcgcttg caagcattag
     4081 aactgatgaa gttcgtgctt tcagctgatg agcgaatagc attaaacgca ttttggcaac
     4141 cttgcccgga gcgttatttt cttcaccata caccgactca gttggtatgg cacgctctgc
     4201 attatgtaaa aactcgccgg ttgccgatgg ttttaatcag taatgaatat gcccgtggtg
     4261 gtacagaaat ttttgtatgt tgccaagatc aacctcaact gtttgctcga atcgcccaat
     4321 tactcagcca aaaacgcatt agcattcacg atgcacaaat tattactact gaaaatggtg
     4381 tagtgttaga cagctttatt gtaagtgagc gtgatggtga tgatgattta accgatgaga
     4441 gatgtatgca aattcagcag gcgatgatga aaatgttaag cttaactgaa acaggcataa
     4501 aatttaccaa aaaaccggtg aaacatttgt catttaagcg taaaactcgg ctgcgttttc
     4561 ttcctccgtc atcaaagcaa caaaccgaat ttgaactttt taccttggat agagaagggt
     4621 tgttggcaca aataggctat atttttaacc ggctccgatt aaatttaatt aatgcgaaaa
     4681 ttacgactat tggtgaaagg gtagaggatt tctttgtggt cagtaatgat caaggaaaag
     4741 ctttatcgga acaagaacag ttagaactaa aagccattct aattaccgaa ctagatagtg
     4801 aatgaaaaca accgcttgga gtgaagactg caagcggtaa atttttcaac gttttaggta
//
LOCUS       DANLZD010000159         4853 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.160, whole genome shotgun sequence.
ACCESSION   DANLZD010000159 DANLZD010000000
VERSION     DANLZD010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4853)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4853)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4853
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.160"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(59..625)
                     /locus_tag="PXE26_002275"
     CDS             complement(59..625)
                     /locus_tag="PXE26_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594818.1"
                     /translation="MEGLIMGLQLIPHFPELAISRRTYLHDMPMYCFVSKNWIFSAKD
                     RAKREALGNLLACGGEMMKSFIFKRSLFSEIWFEDILLEDEEKELIRILYNKPEPEYQ
                     VEEKIDWEAREARRKQADYDKWQSYDERNPFHYQIFPTDTIAYAQQQVEKFIEDVDNF
                     LEWFYDDEVKRYILERNEIYQKKFDLVN"
     gene            complement(1158..1484)
                     /locus_tag="PXE26_002276"
     CDS             complement(1158..1484)
                     /locus_tag="PXE26_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5594819.1"
                     /translation="MLHSKGKILPKITLNEIETKERFAIALRKEMHAQYWTGKMVANA
                     LDVSEKTVKDWVAGKRLPSSLDLLALMRISSCVRQLVWDISKSEECYQDAEMLKQICF
                     VLLSNL"
     gene            1532..3163
                     /locus_tag="PXE26_002277"
     CDS             1532..3163
                     /locus_tag="PXE26_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDL5594820.1"
                     /translation="MVTRTKNQPKNQAVSYIRMSTEHQEFSPDLQRCFIENYAKENGL
                     EIIREYIDEGKSGLTAEHRPQFLSMIQLVQSGQADFDHILVYDVSRWGRFMNIDESGH
                     YELICTYQGIKVHYCAEPFKGNDIASQIYKTMKRLSVGDYCRELGVKVFNGQKNLIQH
                     GFRQGGVAGFGLRRRLIDCQGNPKFDLQRGDRKSLQTDRVILVAGPKEEQEIVRQIYH
                     DFVYQHKTEQQIADSLNAQGIVTDRNTAWTKGVVHQILINEKYVGHNVWNKRSASKTR
                     EYKGKNPVEEWVRAENVFEAIVPQALFNAAQTIIHQRSARLSDDEMLEQLKLLLKEKG
                     KLSGLIIDEAENCPSSSAYSSRFGSLLNTYTLINYEPERDYHYVEINRLLRQQHKNFV
                     QQTLDTIIELGGVVLSDDVTDLVHINNEFTASIVLSRCRLTPSGSKRWLIRFDTSLNP
                     DITIAVRINESATEILDYYLLPTTEKVNEKLRLAESNPAELEIYRHDNLDRFFIMVER
                     ILVKEFIYAKRHHSNSSYRQNSGTQSQNAQSESLC"
     gene            3078..3971
                     /locus_tag="PXE26_002278"
     CDS             3078..3971
                     /locus_tag="PXE26_002278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL5594821.1"
                     /translation="MQNDTIQILPIDKIRVLNPRTRNQKVFADLVENIATIGLKRPIT
                     VTPSVDSAEYYDLLCGQGRLEACQVLGELFIPCRVVNANSEESYLISLVENIARRQHS
                     YMELLSGIKILNDRGYKPVDIARKIGFSKSHVNSILHLINAGEERLINAVEQGILPIT
                     IAISISRSDDQEVQKQLAELYTNGTLKSTDIAKIRNLIHRRNLAGKKANTGISGSIRS
                     SIYNPKTVVNIYKEETERQKMMIKQADYDEKQLSIILSCLNKLFEDKYFQLVLKSEHL
                     DDMPKDLSQRMLKQREGNIYA"
     gene            3964..4827
                     /locus_tag="PXE26_002279"
     CDS             3964..4827
                     /locus_tag="PXE26_002279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL5594822.1"
                     /translation="MPKHITYAFHNQLISLPIDEIIPLKKMDKNFEKSTKFQSILASI
                     REIGIVEPVVVYPEENNQYILLDGHSRVHALKKLGVDKVLCMISTDDEGFTYNKQINR
                     LTAVQENKMLMKTIERGVSDELIARTLNINLKALRQKMNMLNGITREVVDILANKQVS
                     KEIFRILRKMKPERQIEVAQMMIASNKFTLTYANMMLLSSRKEELVESHKSKTTNDDL
                     TDLSIMQKELERLKENYKISEEKLADLKMGLVVAKGYVKKLLNNAAVVDLLENDQSEI
                     YLTLKEVCDIQ"
BASE COUNT         1602 a          926 c          938 g         1387 t
ORIGIN      
        1 agtgtaaaaa aatataaaag tcggcaataa cattatttta taataactaa tgtgaattct
       61 agttcactaa atcgaatttc ttttggtaaa tctcattcct ttctaatata tagcgtttta
      121 cctcatcatc gtaaaaccat tcaagaaagt tatcaacatc ttcaatgaac ttttctacct
      181 gttgctgtgc atatgctatc gtatcggtag ggaagatttg ataatgaaac ggattgcgtt
      241 catcataact ctgccatttg tcataatcgg cttgtttacg ccgcgcttct cttgcctccc
      301 agtcgatttt ttcttccact tgatattctg gctctggctt attatacaaa atacggatga
      361 gttccttttc ttcatcctca agcagaatat cttcaaacca gatttcagaa aataggctgc
      421 gcttgaaaat gaaagacttc atcatttccc ctccacacgc caataagttt cccaatgctt
      481 cccgtttcgc tctatctttt gccgaaaata tccagttttt cgatacaaaa cagtacattg
      541 gcatgtcatg caaataggtt cttcgtgaaa tggctaattc aggaaaatga ggaataagct
      601 gtaaccccat tattaagcct tccatactgc acacgatctt acttaattgt ccgtaatcgc
      661 gtaaaaaagc aatgtcagtt tttatcaacc acaacgatag gctgactaat atgaacataa
      721 agatgagata atagatcggt tttaaggcta aggcgcgccg acaaagccac attaagagtg
      781 gaatcgtaac gagatcaaag aaaaatgatg agtctatgat gatttcctta tgtgagttga
      841 tgaataatca ggcatgaagg aaaccttaaa aaggaaaagt cccttcatta ccacttttta
      901 aaacctttta aggcttaaaa atcaaaagtc gtaatgaagg gactattgtc cgtgggcaaa
      961 aaggtattag ttataggggg ctttgtcaag cgaaaattta ctgtgcattt tctcgccaaa
     1021 actgatttaa gccttgataa aatctcgaaa gtaccttgtc aagaaaaatc tttttagtgg
     1081 tttgattgct agttttttga gcaaaactat gctgtaatgc agtaaaaata cagtttctat
     1141 ctgtgtttgg aatccagtta caaattggag agtaatacaa agcatatttg cttgagcatc
     1201 tcagcatctt ggtagcattc ttctgatttt gaaatatccc aaacaagctg ccgtacacat
     1261 gatgaaattc tcattaacgc caataaatct aggctacttg gcaatctttt ccctgcaacc
     1321 caatctttaa ctgttttctc actcacatct aatgcattgg cgaccatttt ccccgtccaa
     1381 tattgagcat gcatttcctt tcgtaacgca attgcaaacc gctctttcgt ttcaatctca
     1441 ttgagtgtaa ttttgggtaa gattttaccc tttgagtgca acatatttcc tcccgattcc
     1501 tttatattgg tgtagataag gagtcattag aatggttaca cgtacaaaga atcaacctaa
     1561 aaatcaggcg gtttcctaca ttcgaatgtc aacggaacac caagaatttt caccagacct
     1621 tcaacgttgc tttatcgaaa attatgctaa agaaaatggg ctagaaatca ttagagaata
     1681 cattgatgaa ggaaaaagtg ggctaaccgc agaacaccgc ccacaattcc tttcaatgat
     1741 acaactcgta caaagtggac aagccgactt cgatcatatt ttggtgtatg acgtgagtcg
     1801 ttggggtcgg tttatgaata ttgatgaatc ggggcattat gaactgattt gtacctacca
     1861 aggcattaaa gtccactatt gcgccgagcc attcaaaggg aatgatattg cctctcaaat
     1921 atataaaacc atgaaacgtt tgtcggtagg agactactgt cgtgaactcg gagtgaaagt
     1981 atttaacggt caaaaaaatc tgatccaaca tggatttaga caaggtgggg tagctggatt
     2041 tggattgcgt aggagattga ttgactgtca aggaaaccct aaatttgatc tccaacgtgg
     2101 agatagaaag agcctacaaa ccgacagagt gattttggtt gcaggcccaa aggaagagca
     2161 ggaaattgtc cgacaaattt accatgattt tgtttatcaa cataaaacgg aacaacaaat
     2221 tgctgatagc ttaaatgcac aaggcattgt tactgataga aatacagcat ggacgaaagg
     2281 cgtagtacat caaatcctta ttaacgaaaa gtatgtcggc cacaatgttt ggaataaacg
     2341 tagtgcatca aaaacacgcg aatataaagg taaaaacccc gtagaagagt gggtgcgagc
     2401 tgagaatgta tttgaagcta tcgtgccaca agccttattt aatgcagccc aaaccattat
     2461 tcatcaacgc tccgcccgat tatctgacga tgaaatgtta gagcaactca agctactttt
     2521 gaaagagaaa gggaagctgt ctggcttgat cattgatgaa gccgaaaatt gtccatcaag
     2581 tagcgcgtac agtagccgat ttggaagcct acttaacaca tatactttaa ttaactatga
     2641 acccgaacgg gattaccact atgtagagat caaccgatta ctccgtcagc agcataaaaa
     2701 tttcgtacaa caaacacttg ataccattat tgaattgggg ggagtggttt tgagcgatga
     2761 tgtaaccgat ttagtccaca tcaataatga atttaccgcc tcaatcgtat taagtcgttg
     2821 tcgcctaacg ccatcaggaa gcaaaagatg gttgatccga tttgatacca gtttaaatcc
     2881 cgacataaca attgcagtgc gcatcaatga gagtgccaca gaaattcttg attactacct
     2941 gcttcccaca actgaaaagg taaatgaaaa actacgattg gctgagagta atcctgccga
     3001 acttgaaatc taccgccatg ataatttaga tcgctttttt attatggttg aacgtatttt
     3061 agtcaaggag tttatctatg caaaacgaca ccattcaaat tcttcctatc gacaaaattc
     3121 gggtactcaa tcccagaacg cgcaatcaga aagtctttgc tgatctggtc gaaaacattg
     3181 caacgattgg tctcaagaga cctattaccg taacgccatc tgtcgatagt gctgaatatt
     3241 atgatttgtt atgcggtcaa ggtcggcttg aggcttgtca ggtgcttggt gagctattca
     3301 taccttgtcg cgttgtgaac gcaaatagtg aagaaagcta cttgatcagc cttgtggaaa
     3361 atattgccag acgtcagcat tcctatatgg agctgctttc aggcatcaaa atactcaatg
     3421 atagaggtta taagcccgtt gatattgctc gcaaaatcgg tttctcaaaa agccatgtca
     3481 acagtatctt acacctcatc aatgctgggg aagagcgcct tatcaatgcg gtagagcaag
     3541 gaattttacc cattaccatc gctatttcga tttctcgttc agacgatcag gaagttcaaa
     3601 aacaactcgc ggaactttac accaatggta cattgaaaag caccgatatt gccaaaatac
     3661 gtaacctgat ccaccgtaga aatcttgctg gtaagaaagc caatacaggt atttctggaa
     3721 gtattagatc atctatttat aatcccaaaa ctgtggtgaa tatctacaaa gaggaaacgg
     3781 aaagacagaa aatgatgatc aagcaagcgg actatgatga aaaacaactc tctattatct
     3841 tgtcttgctt aaataaactc tttgaggaca aatactttca actcgtcctt aaatcagaac
     3901 atttagacga tatgccaaaa gatttaagcc aacgaatgtt aaaacaacga gagggaaata
     3961 tttatgccta aacatattac ttatgccttt cataatcagt taatttcgct tccaattgat
     4021 gagattattc cattaaaaaa gatggataaa aattttgaga aaagcactaa gttccaaagc
     4081 attctggctt caattcgtga aatcgggatt gttgaacctg tggtcgtcta tccagaagaa
     4141 aacaaccaat atattttgtt agatggccat tctcgtgtac atgcactcaa aaagctaggt
     4201 gtggataagg tgctttgtat gatttctacc gatgatgaag gctttactta caacaagcaa
     4261 attaaccgct taaccgccgt tcaggaaaat aaaatgctga tgaaaaccat tgagcgcggg
     4321 gtttcggatg aactgatcgc aagaacactc aatatcaatc taaaagcact acggcagaaa
     4381 atgaatatgc ttaatgggat cacaagagag gttgttgata tattggccaa taagcaggtc
     4441 agtaaagaga tatttcggat tttgcgcaag atgaagcctg aacgccaaat tgaagtggca
     4501 caaatgatga tcgccagtaa taagtttaca ttgacatacg ccaatatgat gttgctcagt
     4561 tcacgcaagg aggaattagt cgaaagccac aagtctaaaa ccacgaatga tgatttaacc
     4621 gatctttcca ttatgcaaaa agagctagag cgacttaaag agaactataa aatttccgaa
     4681 gagaaattgg cggacttaaa aatgggattg gttgtggcga aagggtatgt caaaaaacta
     4741 ttgaataatg ctgccgtggt agatttgctt gaaaatgatc agagtgaaat ctatcttact
     4801 cttaaagaag tatgtgatat tcaataatat aatatctagc taataacctt aat
//
LOCUS       DANLZD010000160         4824 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.161, whole genome shotgun sequence.
ACCESSION   DANLZD010000160 DANLZD010000000
VERSION     DANLZD010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4824)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4824)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4824
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.161"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(2..808)
                     /gene="trpA"
                     /locus_tag="PXE26_002280"
     CDS             complement(2..808)
                     /gene="trpA"
                     /locus_tag="PXE26_002280"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HDL5594823.1"
                     /translation="MSRFDTLFTALKAKNEGAFVPFVTLCDPGFERSFEIIDTMIKNG
                     ADALELGFPFSDPLLDGPVIQAANKRALDGGYSTDSCFELIAKIRAKYPDIPIGLLLC
                     ANLIFVPTAEVFFQRCQQSGVDAVLIADLPVFAAQEFVPTAEKYGIQPVFICPPNADQ
                     NTIERIAQLTQGYTYLVSRAGVTSAENQAHASNLDNLVESLKQAGAAPILQGFGIAKP
                     EQVKEALRLGADGAISGSAIVKIIERNLADQANLLKELAEFVQVMKAATK"
     gene            complement(810..2000)
                     /gene="trpB"
                     /locus_tag="PXE26_002281"
     CDS             complement(810..2000)
                     /gene="trpB"
                     /locus_tag="PXE26_002281"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HDL5594824.1"
                     /translation="MSDTLLNPYFGEFGGMYVPEILVPVLKELEQAFVDAQQDPTFQA
                     EFADLLKNYAGRPTALTLCRNLTKGSKTKLYLKREDLLHGGAHKTNQVLGQILLAKRM
                     GKTRIIAETGAGQHGVATALACAMLGMPCVVYMGAKDVERQSPNVFRMRLMGAEVIPV
                     QKGSCSLKDACCEAMRDWAANYDTTHYLIGTAAGPHPFPTMVREFQKMIGEEIKRQIL
                     AKEDRLPDAVIAAVGGGSNAIGMFADFIEEQSVKLIGVEPAGKGIETGEHGAPLKHGT
                     TGIYFGMKSPIMQDKDGQIEESYSISAGLDFPSVGPQHAYLNATGRAEYVSITDAEAL
                     EAFQALAKNEGIIPALESSHALAYALKMIKQNPEKEQLLVVNLSGRGDKDIFTVDKIL
                     NGGE"
     gene            complement(2012..2764)
                     /locus_tag="PXE26_002282"
     CDS             complement(2012..2764)
                     /locus_tag="PXE26_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5594825.1"
                     /translation="MKIALVTGVTAGFGLAICKLLLQSGYKVIGTGRRAERLEELHLQ
                     FGDKFLPLAFDIQQPDEVEKALNSRPKAWQQIDLLVNNAGLALGLEPAQKADLNDWYQ
                     MIDTNIKGLVTMTRLVLPEMVERKSGHIINIGSIAGTYPYPGGNVYGGTKAFVKQFSL
                     NLRADLAGTKVRVSNVEPGLCGGTEFSNVRFKGDDEKAAKVYENVQFVRPEDVANIVL
                     WLNQQPEHVNINRVEVMPVAQTSSALNVARNI"
     gene            complement(2990..4522)
                     /locus_tag="PXE26_002283"
     CDS             complement(2990..4522)
                     /locus_tag="PXE26_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HDL5594826.1"
                     /translation="MNLVDYSTSLWSVLPALIALILAIVTRKVIISLSIGILFGAFML
                     TNSNFLDALTYIKNSVVSLVYKGAEEGLNSNNVNIILFLLLLGVLTSLLSISGSNQAF
                     ANWAQKKVKGKRGAKLMAAGLVFFTFIDDYFHSLAVGAIARPVTDKFRVSRAKLAYIL
                     DSTAAPMCVLMPISSWGAYIITLIAGLLATHSITGYSPLGAFMTMSAMNFYAIFAMIM
                     VFFVAYFSFDIGSMARFERQAAHLAELDDEQIETKGHVRDLILPIIALIVATVSMMMK
                     TGADALAESGASFSILGAFENTTVGISLVVGGVAGLIVATICIITSGNISFKNYVRAY
                     GLGVKMMSGAITILFFAWTINGVVSDMQTGKYLSGLVAESIGAEFLPAILFVLAAAMA
                     FSTGTSWGTFGIMLPIGASMAVHSDPALIIPCLSAVMAGAVCGDHCSPVSDTTILSST
                     GAQCNHMDHVISQLPYALLVATASIIGYLVVGFTQSAVLGFIATAVVMAILILLFKEK
                     KH"
BASE COUNT         1471 a         1120 c          872 g         1361 t
ORIGIN      
        1 tttacttcgt agccgctttc atcacttgta caaattcggc aagttctttg agcaaattag
       61 cttggtcagc taaattacgt tcaataattt tcacaatcgc tgagcctgaa atcgccccgt
      121 ctgccccaag ccttaacgcc tcttttacct gttcaggttt ggctatgcca aaaccttgta
      181 agataggggc agctccggct tgttttaaac tttccactaa attatccaaa ttacttgcgt
      241 gagcttggtt ttcagcacta gttacaccgg cacgggaaac taaataagtg tagccttggg
      301 ttaattgagc aatccgttca atggtgtttt gatcagcatt cggcgggcaa ataaacaccg
      361 gctgaattcc atatttttca gcggttggca caaactcttg agcagcgaaa acaggcaaat
      421 cagcaatcaa caccgcatca actccacttt gttggcaacg ttggaaaaat acttctgcgg
      481 ttggcacaaa aattaaattg gcacacagta gtaaaccgat aggaatgtct ggatatttag
      541 ctcgaatttt ggcaatcagc tcaaaacagc tatcagtgct atagccacca tctaaagctc
      601 gtttattcgc tgcttgaatc accggcccgt ctaagagggg gtcagaaaac ggaaagccta
      661 gctctaaagc atcagccccg tttttaatca tcgtgtcgat aatctcaaaa ctgcgttcaa
      721 aaccaggatc gcataatgtc acaaacggca caaaagcccc ttcgtttttt gcttttaatg
      781 cagtaaatag cgtatcaaag cggctcattt tactctcctc catttaaaat tttatccacg
      841 gtgaaaatgt ctttatcgcc tcgacccgat aaattcacca ctaataactg ctctttttca
      901 gggttctgct taatcatttt taacgcatag gctaaggcgt gggaagattc taacgccgga
      961 ataatcccct catttttggc taatgcttgg aatgcctcta aagcctctgc atcggtaatc
     1021 gatacatatt cagctcgccc tgtcgcattt aaataagcgt gttgcggccc gacagaaggg
     1081 aaatctaagc cggctgaaat ggagtaagac tcttcaattt gcccgtcttt atcctgcata
     1141 atcggcgatt tcataccgaa atagatcccc gttgtgccgt gtttgagcgg tgcaccgtgt
     1201 tcaccggttt caattccttt tcctgccggc tcaacaccga tcaatttgac ggattgctct
     1261 tcgataaaat ctgcaaacat accgatagca tttgagccac cgcctacggc agcaatcacc
     1321 gcatcaggca agcggtcttc ttttgctaaa atttgacgtt tgatctcttc gccaatcatt
     1381 ttctgaaatt cacgcaccat tgtcgggaac gggtgcgggc cggctgcagt gccgattagg
     1441 taatgggtag tatcataatt tgccgcccaa tcccgcattg cctcgcaaca ggcatctttg
     1501 agcgagcaag agcctttttg taccggaatc acctccgctc ccattaaacg catacggaat
     1561 acatttggcg attggcgttc tacatctttt gcgcccatat acaccacgca aggcattcct
     1621 aacatcgcac acgctaatgc ggttgccaca ccgtgctgtc ctgctcctgt ttcggcaata
     1681 atgcgggttt tacccattcg tttagcgagt aagatttgcc ctagcacttg gttggtttta
     1741 tgtgccccac cgtgtaaaag atcttcacgt tttaaataga gtttggtttt actgcctttg
     1801 gttaaattac gacaaagggt taaagcagtc gggcgaccgg catagttttt gagtaaatcg
     1861 gcaaattcag cttggaatgt tgggtcttgc tgagcatcta caaaggcttg ttctaattct
     1921 tttagcaccg gcactaaaat ttccggcaca tacataccac caaattcacc aaaataagga
     1981 ttaagaagtg tgtctgacat aatatttcct tttaaatatt tctcgctaca tttaaggcag
     2041 aagaagtttg agccaccggc atcacttcaa cccgattaat attaacgtgt tcaggttgct
     2101 gattcagcca aagcacaata tttgccacat cttccgggcg cacaaactgc acgttttcat
     2161 aaactttagc cgctttttca tcatcgcctt taaagcgtac atttgaaaat tccgtaccgc
     2221 cacatagccc cggctcaaca ttggaaacac gcactttagt gccggctaaa tctgcccgca
     2281 aatttaggct aaactgtttc acgaaggctt tagtaccacc atatacatta ccgcccgggt
     2341 aagggtaagt gccggcaatc gagccgatat taataatatg cccacttttc cgctccacca
     2401 tttcaggcaa aactaagcgt gtcatcgtta ccaatccttt aatattggta tcgatcattt
     2461 gataccaatc gttcaaatct gctttctgtg ccggttctaa gccgagtgca aggcctgcat
     2521 tgtttactaa taaatcaatt tgttgccacg ctttagggcg gctattcagt gctttttcca
     2581 cctcatcggg ctgttgaata tcaaatgcaa gcggtagaaa tttatcgcca aattgtaaat
     2641 gcagttcttc taaacgctct gcccgtctgc ccgtgccaat tactttataa cccgattgaa
     2701 gcaataattt acaaattgcc aacccaaatc cagcagttac tcctgtgact aatgctattt
     2761 tcatcttttc accctcaaat ttaaaatgta ctattaaagt agtacaaaaa aattaaaatt
     2821 gcaagaaata atattgccat aaaagaaaaa agcgtaccaa aaggtacgct aatgctagga
     2881 ggatcttatt ttaagattta tataacacaa cattcgatat ccatatcttg agtgctattt
     2941 tatctcatca ataaatctca ttctgtgatt cccttcacat tttcggaaat taatgctttt
     3001 tttctttaaa aagcaaaatg agtattgcca taacaacagc tgtagcaata aatcccaata
     3061 ccgctgattg ggtaaagcca accactaagt aaccaataat agaagctgtt gcaactaata
     3121 aagcataagg taattgagaa atgacatgat ccatatgatt acattgtgcg cctgttgaag
     3181 aaagaatagt ggtatcagat actggagaac agtgatcacc acaaaccgca ccagccatta
     3241 ctgcagataa acaaggaata attaatgctg gatctgaatg cactgccatt gaggctccaa
     3301 ttggcaacat aataccaaat gttccccagc tagttcctgt tgaaaacgcc attgctgcgg
     3361 ctaacacaaa tagaattgca ggtaaaaact ctgctccaat gctttctgca accaatcctg
     3421 atagatattt ccctgtttgc atatcactta ctacgccgtt tattgtccac gcaaagaaga
     3481 gaatagtgat tgcaccagac atcatcttca cacctaagcc ataagcacgg acgtaatttt
     3541 taaaagaaat attaccgctt gtaatgatac aaatagttgc aactataagc cctgccacac
     3601 caccaacaac taatgaaatg cctaccgtag tattttcaaa agcacctagt atagaaaatg
     3661 aagcacctga ttcggccagt gcatctgcac ctgttttcat catcattgag actgtagcaa
     3721 caataagtgc aataattggc aaaatcaaat cgcgcacgtg tcctttcgtt tcaatttgct
     3781 catcatctaa ttctgctaaa tgcgctgctt gacgttcaaa acgcgccatc gaaccaatat
     3841 caaatgagaa atatgccaca aagaacacca taatcatcgc aaaaatggcg taaaagttca
     3901 ttgcgctcat tgtcataaat gcgcctagtg gcgaatagcc tgtgatggaa tgcgtagcca
     3961 ataagccagc tattaaggta ataatataag ccccccagct tgaaattggc attaacacgc
     4021 acattggagc ggcggtagaa tctaaaatat aagctaattt agcacgagaa acacggaatt
     4081 tatccgtaac agggcgggca atcgcaccta ctgctaaact gtggaaatag tcatcaataa
     4141 aggtaaagaa aaccaaacct gccgccatta attttgcgcc tcgtttgcct tttacctttt
     4201 tctgcgccca attcgcaaac gcctgattac tacctgaaat acttaataat gacgttaata
     4261 cccctaataa aagcaaaaat aaaataatgt taacattatt tgaatttaat ccttcttcag
     4321 cccctttata aactaaagaa acaacgctat ttttaatata agtaagtgca tcaagaaaat
     4381 tgctattagt aagcataaat gcaccaaaga gaataccgat gctaagtgaa ataatcacct
     4441 tgcgtgtcac aattgccaat attagcgcaa tcagtgccgg caataccgac caaagtgacg
     4501 tagaataatc aactagattc ataaaacctc taaaatgact gtgtataatt tgtataaata
     4561 agaatagcca aacaagagat ctactgggat atttataaaa ataaatatga aaggaaggca
     4621 aatgtgaaat atctgaaacc caccctaaca gtagcactcc gtagcattta ctacgacagt
     4681 gtcgtttctt tcgacaacga ccccaaccaa ttaagatgac gcttaattga tttcggcaaa
     4741 ttcacctttc cttccccttc atcgttttcc actcagaaga aatacttatt gaattcgcac
     4801 ctctacaatt tgtaggacag tgtt
//
LOCUS       DANLZD010000161         4742 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.162, whole genome shotgun sequence.
ACCESSION   DANLZD010000161 DANLZD010000000
VERSION     DANLZD010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4742)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4742)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4742
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.162"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            7..480
                     /locus_tag="PXE26_002284"
     CDS             7..480
                     /locus_tag="PXE26_002284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HDL5594827.1"
                     /translation="MISFALVGCSSNSGESTSAVETTEANATWQSADSIQTAPMPASM
                     NQPIATQPTYQQPTYSAPQPISAAPAPMPVSSGSDSSQVETVGNCQVVRDANNAPIYS
                     QITKGCYTESHYTVGKSDTLYLIGYLTGTNANQIAQLNGLNTGSPLKVGQVLRVR"
     gene            493..693
                     /locus_tag="PXE26_002285"
     CDS             493..693
                     /locus_tag="PXE26_002285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594828.1"
                     /translation="MNRTLLAFAISCAFLTACSSPTQPQVEDPNMLPAGTLQPIEGSG
                     ASQDSYSWPSDIQSTSMPDSMK"
     gene            712..1992
                     /locus_tag="PXE26_002286"
     CDS             712..1992
                     /locus_tag="PXE26_002286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDL5594829.1"
                     /translation="MKKQFILLPLVSAVLAACSSNNPAPVVNASGNNELSPGVMQPVD
                     VSAGAINSSGGWQSDIQSAPMPSSMNTTPVQTMPQPVSVPQPVATVPQPITNPVITEQ
                     PPQPTTTTKIVKKTKTVEKKVDQNFEIPRDANNAPMYNQIQKGFYDGSTYTVRKGDTM
                     FLIAYIVGKDVKEIAALNNMSEPYQLSVGQKLKTGKSATETITVEEKVTVPVEPQITY
                     QQGANGTTYASGGNITGPVKAGTANADVTPVNNGIKATTATAPAVTASVGTVNATEDR
                     TASTIRAIDGTASGAVQSSNTVSAPASSIKWQWPTSGRVISGFSSAEGGNKGIDIAGN
                     KGQDVRAAAAGKVVYAGNALQGYGNLIIIKHTDDFLSAYAHNNTIEVDEQETVKAGQK
                     IATLGSTGTNTNKLHFEIRYKGKSVDPARYLPRK"
     gene            2233..2424
                     /locus_tag="PXE26_002287"
     CDS             2233..2424
                     /locus_tag="PXE26_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594830.1"
                     /translation="MDPTEPSHRIYILLSEDRFQAEVFSTKLSESSMLLEAVKGGYIS
                     KDGKVRLLKKAEGWKIYYE"
     gene            2417..2983
                     /locus_tag="PXE26_002288"
     CDS             2417..2983
                     /locus_tag="PXE26_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HDL5594831.1"
                     /translation="MSETKIRCDWCKSSEIYMKYHDEEWGKPEFDSLKLFEKICLEGQ
                     QAGLSWITVLKKREAYRQAFHQFNPEKIAKMGEEEIDLLMQNTSLIHHRAKLEAIIKN
                     AKAYITMQQNGEDFSRFIWSFVNYQPQINDVPTLEAVPAHTETSKAMSKALKKRGFVF
                     VGETTCYAFMQSMGLVNDHLNNCVFKHK"
     gene            complement(3030..3260)
                     /gene="acpP"
                     /locus_tag="PXE26_002289"
     CDS             complement(3030..3260)
                     /gene="acpP"
                     /locus_tag="PXE26_002289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDL5594832.1"
                     /translation="MSIEERVKKIIVDQLGAKAEDVKPEASFIEDLGADSLDTVELVM
                     ALEEEFDIEIPDEEAEKITTVQSAIDYVQNNQ"
     gene            complement(3447..4124)
                     /gene="rpe"
                     /locus_tag="PXE26_002290"
     CDS             complement(3447..4124)
                     /gene="rpe"
                     /locus_tag="PXE26_002290"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HDL5594833.1"
                     /translation="MSKNPYLIAPSILSADLARLGDDVAEVLKAGADLIHFDVMDNHY
                     VPNLTFGPAICKALRDYGIQCPIDVHLMVKPVERLIPDFAKAGADYITFHPEATEHID
                     RNLQLIRDLGCKSGLVFNPATPLSYLDYVMDKVDVVLLMSVNPGFGGQSFIPSTLDKL
                     KEVRRRIDESGYNIRLEVDGGVKINNIADIAAAGADMFVAGSAIFDQPDYQAVIAQMR
                     DELRKVG"
     gene            4318..4590
                     /locus_tag="PXE26_002291"
     CDS             4318..4590
                     /locus_tag="PXE26_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HDL5594834.1"
                     /translation="MKKGIHPENYREVLFYDASVQQGWVIRSCAATNKTMVWEDGKEY
                     PLYTLDTSSASHPVYTGKRREVNTEGRASQFKDRFKGFASTLSNQK"
     gene            4599..4724
                     /gene="ykgO"
                     /locus_tag="PXE26_002292"
     CDS             4599..4724
                     /gene="ykgO"
                     /locus_tag="PXE26_002292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HDL5594835.1"
                     /translation="MKILNSLKTAKSRHPDCQIVRRKGKLYVICKTNPRFKARQR"
BASE COUNT         1523 a         1021 c          904 g         1294 t
ORIGIN      
        1 ttatctctga tttcttttgc tttagtgggt tgttcaagca attcgggtga atccacttct
       61 gcggtagaaa caacagaagc aaatgcaact tggcaatcag cagatagcat tcaaactgca
      121 ccaatgcctg cctcgatgaa tcaacctatt gccactcagc caacctatca gcagccgact
      181 tactctgcac cacaaccaat ttcggcagca ccagcaccaa tgcctgtttc aagtggtagt
      241 gatagctctc aagttgaaac agtagggaac tgccaagtgg tgcgtgatgc gaataatgct
      301 cctatctatt cacaaattac caaaggctgc tacacagaaa gtcactatac ggtaggtaaa
      361 agtgatacgc tttatttaat cggttatcta accggcacca atgccaatca aattgcgcag
      421 ctaaatggtt taaataccgg ctctccactg aaagtcgggc aagtcttacg tgttcgttaa
      481 taggcagaga aaatgaacag aaccctttta gcatttgcaa tttcttgtgc atttttgacc
      541 gcttgtagct cgcctactca gccacaagtt gaagatccaa atatgttacc tgcaggcaca
      601 ttacaaccga ttgaaggctc aggcgcaagc caagacagtt acagttggcc gtctgatatt
      661 caatcaacgt caatgcctga cagtatgaaa taattttagg acaatcattt aatgaaaaaa
      721 caatttattc ttctcccttt agtctctgct gttttggcag cctgttcttc aaacaatcca
      781 gcaccggtgg tgaatgcttc cggtaataac gaattaagcc cgggcgtgat gcagcctgtt
      841 gatgtgagtg caggtgcaat taattcaagc ggtggctggc agtctgatat tcaatctgca
      901 ccaatgccaa gctcgatgaa taccactccg gtgcaaacaa tgccccagcc ggtttcagtg
      961 ccacaacctg tggcgactgt accgcagcca attaccaatc cggtgattac cgaacaacca
     1021 ccacagccga caaccacgac caaaatcgtg aaaaaaacga aaacggtcga gaaaaaagtg
     1081 gatcaaaatt ttgagatccc gcgtgatgcc aacaatgccc caatgtacaa ccaaattcaa
     1141 aaagggttct acgatggctc tacctatacc gtacgcaaag gcgacacaat gtttttgatt
     1201 gcctatattg tgggtaaaga tgtaaaagaa atcgccgctc ttaataatat gagcgaacct
     1261 taccaattaa gcgtagggca aaaactcaaa accggcaaat ctgcaacgga aactattacc
     1321 gtggaagaaa aagtcaccgt accggttgaa ccacaaatta cctaccaaca aggtgcaaac
     1381 ggcacaacct atgcttctgg cggtaatatt actgggccgg taaaagcagg cacagccaac
     1441 gctgatgtca cgccggttaa taacggtatt aaagcaacaa ctgcaactgc tccggcagta
     1501 actgcttctg tcggtacagt aaatgcaaca gaggaccgta ccgcctccac cattcgtgct
     1561 atagatggca cagcaagtgg tgccgtacaa agtagtaata ctgtttctgc accagcttca
     1621 tcaattaaat ggcaatggcc aaccagcggg cgtgtaattt caggcttctc ctcagcagaa
     1681 ggaggtaata aaggcattga tattgccggc aataaaggac aagatgtacg tgctgccgcc
     1741 gcaggtaaag tggtatatgc cggtaatgcc ttgcagggtt acggtaactt aatcatcatc
     1801 aaacataccg atgatttctt aagtgcttat gcacacaaca atactattga agttgatgag
     1861 caagaaacgg tgaaagccgg tcagaaaatc gcgactttag gtagtacagg aaccaatacg
     1921 aataaattac attttgaaat tcgttacaaa ggaaaatctg tcgatccggc tcgttattta
     1981 ccaagaaaat aagagtaact ttttagcata atccgaccgc ttgtgtacta caagcggtca
     2041 atttttagga aaattatgca aatgaaaaaa tatatcgcac acatgataag ttcgttactg
     2101 ctgatagctt gttcggacta ccgagcaaca ccaactagcc caagcgatgc ttacacttgc
     2161 tctccttctt ttcgctactc tttcttaaaa aaaacgtgca tacctttatt cagtatagcc
     2221 gacattcaat tattggatcc aaccgagcct tcacatcgca tttatatttt gttatctgaa
     2281 gatcgatttc aagccgaagt cttctcaacg aagctctctg aatcttctat gttattggag
     2341 gcggttaaag gaggctatat ttcaaaagac ggaaaagttc gtttactcaa aaaagctgaa
     2401 ggttggaaaa tttactatga gtgagactaa aatacgttgt gattggtgta aaagcagtga
     2461 aatttatatg aaatatcacg acgaagaatg gggaaaaccg gagtttgaca gcctcaaact
     2521 gtttgagaaa atctgccttg aagggcaaca agccggactt tcttggatta cggtgttgaa
     2581 aaaacgggaa gcctaccgcc aagcattcca tcagtttaat cctgaaaaaa ttgccaaaat
     2641 gggtgaagaa gaaattgatt tgttaatgca aaacactagc ttaatccacc accgagcaaa
     2701 gttagaagcc attataaaaa atgcgaaagc ttatatcaca atgcagcaaa atggcgaaga
     2761 cttcagtcgg tttatttggt cttttgtgaa ttatcagccg caaattaatg atgtaccaac
     2821 acttgaagct gttcctgctc atacagaaac ctcaaaagca atgtcaaaag cgttgaaaaa
     2881 acgtgggttt gtgtttgtag gcgagactac ttgctatgct tttatgcagt caatggggct
     2941 ggttaatgac catttgaata attgcgtgtt caaacataaa taaacacaaa aaattaggcg
     3001 accatttggt cgcctaacat taattcagat tattgattgt tttgaacgta atcaattgct
     3061 gattgaactg tagtaatttt ttcagcttct tcatctggaa tttcgatatc gaattcttct
     3121 tctaaagcca ttactaattc aacagtgtct aaagaatctg cacctaaatc ttcaatgaat
     3181 gaagcttctg gttttacatc ttctgctttc gcgccaagtt gatcaacaat gatttttttt
     3241 acgcgttctt caatgctcat tttgtttttc ctatagtgaa tatcgcataa gtgcgagagt
     3301 taaatagtgt aatcgaaata agtttaaata caacctttta taaaaaggtc aaaccagact
     3361 attcctatac accagaatat atctgttttt ccattctatc attatgtttg tgtttaatct
     3421 atagagataa atcaaatttc atttgattac cctactttcc gtaattcatc tcgcatttgt
     3481 gcaatcactg cttgataatc tggctggtca aaaatcgcag aacctgccac aaacatatct
     3541 gctcctgcgg ctgcaatgtc ggcaatgtta tttattttca caccaccatc aacctctaag
     3601 cgaatgttat aaccgctctc atcaatacga cgacggactt ctttcaattt atctaaggtg
     3661 gacggaataa atgattgtcc gccaaagccc ggattcacag acatcaataa aaccacgtca
     3721 actttatcca tcacataatc taaatagctc aatggcgttg ccgggttaaa caccaagcct
     3781 gatttacaac ctaaatcacg gataagctgt aaatttcgat ctatatgttc cgttgcttca
     3841 gggtggaatg taatataatc cgctccggct ttggcaaaat ccggaatcaa acgctcaacc
     3901 ggttttacca ttaaatgcac atcaatcggg cattgaatgc cgtaatcacg taaggctttg
     3961 cagatcgccg gcccgaaggt caaattcggc acgtagtggt tgtccattac atcaaagtga
     4021 attaagtctg caccggcttt taacacctct gccacatcat cacccaagcg agctaaatcg
     4081 gcagataaaa tagacggtgc aattaaataa ggattcttac tcatatttcc tcactatcaa
     4141 aaaataaatc tacgttagat taccataatt ttaacagcga aaagagtctc tcttcctaaa
     4201 aatccgtttt tttacaaaac accataaaaa agttatggaa ttgtatttaa agttcgtata
     4261 ttatgtatcc catattttaa ttatggttaa tgaccttatc taaattctgg agaaaatatg
     4321 aaaaaaggga ttcatcctga aaattatcgt gaagtgttgt tctatgatgc ctcagtgcaa
     4381 caaggctggg ttatccgttc ttgtgcggca accaacaaaa caatggtatg ggaagatggc
     4441 aaagaatacc cactttacac cttagatacc tcatcggcgt ctcaccctgt ttacacaggt
     4501 aaacgccgtg aagtgaatac agaaggtcgt gcaagtcaat ttaaagatag atttaaaggc
     4561 tttgcttcaa cgctttcaaa tcaaaaatag aggataaaat gaaaatctta aactcactta
     4621 aaaccgcaaa atcacgccac ccggattgcc aaattgtcag acgcaaaggc aaactttatg
     4681 tgatttgcaa aaccaacccg agatttaaag ctcgtcagcg ttaaaaacca gcaccttaat
     4741 aa
//
LOCUS       DANLZD010000162         4717 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.163, whole genome shotgun sequence.
ACCESSION   DANLZD010000162 DANLZD010000000
VERSION     DANLZD010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4717)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4717)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4717
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.163"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(61..1158)
                     /locus_tag="PXE26_002293"
     CDS             complement(61..1158)
                     /locus_tag="PXE26_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HDL5594836.1"
                     /translation="MFYSSNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQ
                     AVEQGGVEALLNQNRRVPNIKNRVDESTEKAVVQFALDNPAFGQVRVSNELRKQGIFV
                     SAGGFCLCRWFLSLQVVFVSAGGVRSIWLRHHLANFKQRLTALEKLVAEQGIILSEPQ
                     IQALERKKEDEIACGEIETAHPGYLGSQDTFYVGNIKGVGRIYQQTFIDTYSKVAFAK
                     LYTMKTAITAADMLNDKVLPFFESQRLPMLRVLTDRGSEYCGKVENHDYELYLAINDI
                     EHTKTKVKQPQTNGICERFHKTILQEFYQVAFRKRIYMDLEALQADLDEWLMYYNHHR
                     THQGKMCCGRTPMETLVDGKRIWAEKNLSSN"
     gene            1488..2204
                     /locus_tag="PXE26_002294"
     CDS             1488..2204
                     /locus_tag="PXE26_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HDL5594837.1"
                     /translation="MYLMYVDESGSTTDPTQKYFVLSGIAVFERNTHWIEKKMNVIAS
                     QFCQYSEGSDPYFYELHGSPMRSGKSEWRGIPMSERINAIQDCLKLVQSNNIRIFAAV
                     IEQGYSSGQDTITECFEQISSRFDMYLSRLHAQGNTQRGISIFDKSSTEKSIQALART
                     FKNSGHTYGKLRNFSEVPLFLDSKSSRLIQLADLVSYAIFRHYEHNDSSFYDIIRNNF
                     DYHNGRIHGLYLRNKEDIIS"
     gene            complement(2247..3165)
                     /locus_tag="PXE26_002295"
                     /pseudo
     CDS             complement(2247..3165)
                     /locus_tag="PXE26_002295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700778.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
     gene            complement(3167..>4717)
                     /locus_tag="PXE26_002296"
     CDS             complement(3167..>4717)
                     /locus_tag="PXE26_002296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase/relaxase domain-containing protein"
                     /protein_id="HDL5594838.1"
                     /translation="VHDIGKVVVDIEITLKDGSRWFAWNGLPPQPYKFKYIKGRDYHL
                     HPVLGGFLANQLIPKSAFDWLGQYPEVISSLMYAMSGHNDKAGLLSEIVQKADQHSVT
                     LALGGDVNKLVQRPVNSLSKQLVLALRYLLEQKIKLNTPKGPADGWFTEEGLWLVSKT
                     AADNIRAYLLGQGISVPKDNPKLFDEMQSLGIVEESPAGGAIWSCRIQADSGWTPANT
                     FTLLRIKPEVAWENINDRPNYFAGKVKIVEQITEESNIETQSTLVDGTTKPAPLPSVQ
                     TGGIIASKEVEISQVETNSDNAPSSEIIINDENDLTSFVLDMFAPTESSEPSLDDISI
                     GKGQEIASMPSKQEVQDKSTTKKLKVTQSAVETPETLTLSELQLQNKENSITGDNFVK
                     WLKSGIATNKFAINKPTAKLHIVEDHLFLVTPVIFEMYLQETGQPYDKETINNLQYDF
                     QGLGIHSPKNTMTNGKPDTINFWKCDVIGPRKTSSLTGYLIKNTRLFFGDKVLLNNHC
                     LTLQKEET"
BASE COUNT         1377 a          918 c          850 g         1572 t
ORIGIN      
        1 actgtagaag atcaaaccta atctgacagt cccccgtttt aaattaccgt gtctgtcaga
       61 ttaatttgag cttaaattct tttctgccca aatgcgtttt ccatcaacta atgtctccat
      121 cggtgttctt ccacagcaca tttttccttg atgggttcga tgatggttat aatacattaa
      181 ccattcatct aagtcagctt gcaatgcctc taaatccata taaatccgtt ttctgaatgc
      241 cacttggtag aactcctgca aaatcgtttt gtgaaaacgc tcacagatgc cgtttgtttg
      301 tggctgtttc actttggttt ttgtgtgctc tatgtcattg atagccaaat aaagctcata
      361 atcgtgattc tcaactttcc cacaatactc actgcctcgg tctgtcagca ctcgtaacat
      421 aggtaacctc tggctttcaa agaatggtaa tactttgtca tttagcatat cagcagcagt
      481 gatagccgtc ttcattgtat acagttttgc aaatgccact ttactataag tatcaataaa
      541 cgtttgctga taaatacgac ccacaccttt aatattgccg acataaaagg tatcttgtga
      601 ccctaaatag ccggggtgtg ccgtttcaat ttcaccacag gcaatctcat cttctttctt
      661 ccgctccaag gcttgtatct gtggctcact cagaataatg ccttgctctg ccaccaattt
      721 ttcgagggca gttaagcgtt gcttaaaatt agctaagtga tgtctcaacc aaatggaacg
      781 tacaccacct gcagagacaa aaaccacctg cagagacaaa aaccacctgc agagacaaaa
      841 accacctgca gagacaaaaa tcccctgttt acgcagttca ttactcactc gaacttgacc
      901 aaaagcagga ttatctaaag cgaattgtac aaccgctttt tctgtggatt catccacacg
      961 atttttaatg ttgggaacac gtcgattttg atttagtaat gcctcaacac cgccttgttc
     1021 gacagcctgt tgatagcgat aaaaagtatc tcgactcatc cccattacct tacaggcttg
     1081 tgagatatta cccagttctt ctgctaaatt taataaaccg gtcttgtgtt taataagtgg
     1141 attgctagaa taaaacatga gagtttcctt tttgtttaga ttgatttttg acactcatat
     1201 tctaaacggg aaactctcac tttttagagt gaattgtcag atcaagtctg atcttctaca
     1261 gacgatccag gtcttacaca ttctttcaag tttgtaaagc ctgaaaatta ttttttatac
     1321 ttgatttttg tcaaaaagtc tctacactat atggcagggt cagttttcgc tgtttaacgg
     1381 tgtttaatga gattttcatt actggctctc cttaatagaa atttatggaa gagctatctg
     1441 atagagtaat ctagcgatag ctctttttca ttgaacaaag aggctatatg tatcttatgt
     1501 atgttgatga gtctggttct acgacagatc ctactcaaaa atattttgta ttatcaggta
     1561 tcgctgtatt tgaacgaaat actcattgga ttgagaaaaa aatgaatgtg atagcctctc
     1621 aattctgtca atattctgaa gggagtgatc catatttcta tgagttacat ggttcaccaa
     1681 tgagatctgg aaagagtgaa tggagaggca ttccaatgag tgagcgtatt aatgccattc
     1741 aagattgctt gaaattagtt caaagtaata atattcgtat atttgcagca gttatagagc
     1801 aagggtattc tagtggtcag gatactatta cagaatgttt tgagcaaata tcatctcgat
     1861 ttgatatgta tctgagccgt ttacatgccc aaggtaatac ccaaagaggc atttctatct
     1921 ttgataaatc atcgactgag aagtcaatcc aagcacttgc aagaacattc aaaaatagtg
     1981 ggcatactta tgggaaactt agaaatttct cagaagttcc attatttctt gactcaaagt
     2041 catcgagatt aattcagcta gcggatctag tttcctatgc gatatttaga cactatgaac
     2101 acaatgatag ctcattttac gatattataa gaaataactt tgattatcat aacgggcgta
     2161 ttcatggttt atatttacgg aacaaagaag atattatttc ataaaaattc gccccaaaag
     2221 ggagaagtat ctcccttttg tattttttat aacaaattaa ccgtttctct caacatttcc
     2281 acatcgtgtt caatatatcc tagtgtcaca ctgatatctt tatgccctaa cagtttctga
     2341 accacataaa cattttcggg cttcttcatt aattgagtag caactgtatg tcgaaatctg
     2401 tgtggtgatg aagtaaaacc gaccaagtca gaaatatgcc gaaatatatg tgtaagctga
     2461 ttttggctca tcggctgtcc tcttcttcga gagcatcgag aaaataaatt gagattgaac
     2521 aattggcaat tatctgtttg ttttcttatt tttaattcag taataagcct ttctatatga
     2581 atataaagtg aatctgaaat cggtacgata tggtaatcat gatttttatt gatttccggc
     2641 gaaatataaa tcgtcctatt agaaagatct acatcactaa ttttcagttt cactaattgt
     2701 cctcgccgaa tccccgtaca tctcaatgtc ataataattg caaggacaaa ccagcttggt
     2761 tttagaaagt caggtaatac aacgttatta ttgagtatgt ggtctatttt atgtaattgt
     2821 tcggttgaat aagttttctt tctccttttc gattctcgaa taaataactg attaaatgga
     2881 tttcgattta tattaagtaa tccttgcgat ataccaaagt tatataaggc ttttaaatgt
     2941 ctgacataat tattccacgt tactgctttg attttatcgc caacaatttg attacgccat
     3001 tcaatgagca tatcggtggt aatgtcattg gcatttaact ttggataacg ctttttgata
     3061 attcggatta cgttgttgta gctccgtttg gtatccggac gaagatagtg acgatagaaa
     3121 aaaaaatcgg tctagtagcg aatcaaaaga gatagaagtt atcattttaa gtttcctctt
     3181 tctgtaaagt taaacagtga ttatttaata gtaccttatc cccaaaaaag agacgggtat
     3241 tttttatcaa atatcctgtt aaagaggaag tctttctcgg tccaatgaca tcacatttcc
     3301 aaaaattgat ggtatccggc ttaccgttgg tcattgtgtt tttaggtgaa tgaatcccta
     3361 atccttgaaa atcatactgg agattattaa ttgtttcctt atcataaggc tgtccagtct
     3421 cttgcaaata catttcaaaa ataacggggg taactaaaaa caggtggtct tcaacaatat
     3481 ggagcttggc agtaggcttg ttaattgcaa atttgttggt cgcaatacct gatttgagcc
     3541 actttacaaa gttatctcct gtaattgagt tctccttatt ctgtaactgt agctctgata
     3601 gtgttaatgt ttcgggcgtt tctactgcac tttgtgttac tttgagcttt ttagtggtag
     3661 atttatcctg tacttcttgt ttggatggca tacttgcaat ttcctgtccc ttaccaattg
     3721 aaatatcatc aaggcttggt tcggaacttt ccgtaggtgc aaacatatcc agcacaaagg
     3781 aggttaaatc attttcatca tttatgatga tttctgagga tggtgcatta tccgagtttg
     3841 tctctacctg agatatttca acttctttag aggcaataat gccccctgtc tgaacactcg
     3901 gtaatggagc tggtttagtg gtcccatcga ctaatgtaga ctgagtctct atattacttt
     3961 cttctgttat ctgctcgact attttaactt ttccggcaaa ataatttggt cgatcattaa
     4021 tattctccca agccacttct ggtttaattc tcaataatgt aaaggtattt gctggcgtcc
     4081 aacctgaatc agcttgaata cggcaactcc aaattgctcc accagccggt gattcttcta
     4141 caataccgag agactgcatt tcatcaaata actttggatt atccttaggc actgaaattc
     4201 cctgccccag taagtaagct cggatattat cagcagcagt tttgctaaca agccacaatc
     4261 cttcctcagt gaaccaaccg tctgccggac ctttgggtgt atttaacttt attttctgtt
     4321 ccagcaaata acgtagtgcc aagaccagtt gctttgacag agaattgaca ggacgttgaa
     4381 ccagtttatt tacatcgcca ccgagtgcga gggtaacact atgctgatcg gctttctgca
     4441 cgatctcaga taaaagcccg gctttatcgt tatgcccaga cattgcatac atcagtgaag
     4501 aaatgacttc tggatactgt cccagccaat caaacgcaga ttttggaata agttgatttg
     4561 caaggaagcc tcctagcacc ggatgaagat ggtagtctcg acctttgatg tatttgaatt
     4621 tataaggttg aggtggtaac ccattccaag caaaccaacg tgaaccgtct ttgagtgtaa
     4681 tttcaatatc aacgacaact ttgccaatat cgtgaac
//
LOCUS       DANLZD010000163         4683 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.164, whole genome shotgun sequence.
ACCESSION   DANLZD010000163 DANLZD010000000
VERSION     DANLZD010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4683)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4683)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4683
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.164"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            72..1262
                     /locus_tag="PXE26_002297"
     CDS             72..1262
                     /locus_tag="PXE26_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000462687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/tyrosine/aromatic aminotransferase"
                     /protein_id="HDL5594839.1"
                     /translation="MFSHIQAAPADSILGLGEAFKADSREGKINLGIGVYMTDEGKTP
                     IVKAVKEAEKRLLETENSKNYLTIDGVQAFNAATQALLFGEGAEVITSGRAKTAQSLG
                     GTGALRIAAEFIKRHTNAKNVWISTPTWPNHNGIFDAVGVNVKGYRYYNKETNGLDWE
                     NLIADLSQAEAGDVVLLHGCCHNPTGIDPTPAQWEQLAALSAEKGWLPLFDFAYQGFA
                     NGLEEDAYGLRAFVKNNRELLVASSFSKNFGLYNERVGAFTLIADNADDANRAFTQIK
                     SIIRVLYSNPSAHGASAVAVALADPDLKAQWIAELDEMRNRIKEMRSQLVQKLKEKGA
                     NKDFSFITEQNGMFSFSGLTPEQVDKLKDEFAIYAVRSGRINVAGITSKNIDALADAI
                     VKVL"
     gene            complement(1369..2670)
                     /gene="folC"
                     /locus_tag="PXE26_002298"
     CDS             complement(1369..2670)
                     /gene="folC"
                     /locus_tag="PXE26_002298"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HDL5594840.1"
                     /translation="MNTLSIPKATDSLETWLSYLEQAHSKPIDMGLDRIRKVATELDL
                     LKPAPYVITVAGTNGKGSTCRLLEVTLLKAGFRVGVYSSPHLIHYNERVRINGEVLPD
                     ADHVQAFAKINAKKTASLTYFEFSTLSAFELFKQNQLDIVILEVGLGGRLDATNIIDP
                     SLAVIISIDIDHVAFLGDNREDIGREKAGIFRENIPVVIGEPDCPHSIKQIADSLNCH
                     AFYRGKDWQFEIKNNLFHWYSEEKSFTDLPIPLIPIPNAGTALAVLMQLPFEIDEKII
                     RQALNEAQMTGRFQTLTDTDFTHFSQPKPAAKVIIDVGHNPHAARYLADKLRELKQPN
                     QKIYAVFSALEDKDLSGIVEPLANIIDEWHCAGLDCWRGQTGEAVLAKLVNVLPNSTA
                     CSYENVAQASRVLFETANENDIVLVFGSFHTVADFMLWLET"
     gene            complement(2680..3576)
                     /gene="accD"
                     /locus_tag="PXE26_002299"
     CDS             complement(2680..3576)
                     /gene="accD"
                     /locus_tag="PXE26_002299"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HDL5594841.1"
                     /translation="MSWLDRILGRDSSSSSNAKSKVPEGVWTKCTSCEQVLYSEELQR
                     NQQVCPKCDHHMRIDARTRLLNLLDKDSAVEIAADLEPEDVLKFKDLKKYKDRLTAAQ
                     KQTGEKDSFIVLAGTLHNMPVVTASFNFEFMGGSMGSVVGAKFVKAAEKALAEKIPFI
                     CFSASGGARMQEALFSLMQMAKTSAILAKMKEQGVPFISVLTDPTLGGVSASLAMLGD
                     VNIAEPKALIGFAGPRVIEQTVREKLPEGFQRAEFLLEHGAVDMIVHRKEMRDTLSRL
                     CAKLTNQPTPFKVAELVVENAE"
     gene            3885..4667
                     /gene="mazG"
                     /locus_tag="PXE26_002300"
                     /pseudo
     CDS             3885..4667
                     /gene="mazG"
                     /locus_tag="PXE26_002300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991517.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
BASE COUNT         1422 a          957 c          962 g         1342 t
ORIGIN      
        1 ttgctaaatc tgcaatttaa tcgtataaat tcactgttta tttttcattt tgatgaggaa
       61 ctccaatgtc aatgtttagt cacattcaag ctgctccggc agactcaatt ttaggcttag
      121 gtgaagcgtt taaagcagat agccgtgaag gtaaaatcaa ccttggtatc ggtgtttata
      181 tgaccgatga aggcaaaacc ccgattgtca aagcggtaaa agaagcagaa aaacgtttat
      241 tagagacgga aaacagtaaa aattatttaa ccattgacgg tgttcaagca ttcaatgcgg
      301 caacgcaagc gttattattt ggcgaagggg ctgaagtgat tacctcaggt cgtgctaaaa
      361 ctgcacagag tttaggtggg acaggggcat tacgcattgc ggcggaattt atcaaacgtc
      421 atacgaatgc gaaaaatgta tggatttcaa ccccgacttg gccaaaccat aacggcattt
      481 ttgatgcagt aggcgtgaat gtaaaaggct atcgctacta caataaagag actaacggtt
      541 tagattggga aaatttaatt gccgatttaa gccaagcgga agccggagat gtggtgttat
      601 tgcacggttg ctgccacaac ccgaccggaa ttgacccaac acctgcacaa tgggaacagt
      661 tagcagcatt atctgccgaa aaaggctggt tgccgttatt tgactttgct tatcaaggct
      721 ttgcaaacgg tttagaggaa gatgcttacg gtttacgagc ttttgtgaaa aataaccgtg
      781 aattgttggt cgcaagctca ttctcgaaaa actttgggtt atataacgag cgtgtcggtg
      841 catttaccct aattgcagat aatgctgatg atgccaaccg tgctttcact caaatcaaat
      901 cgattattcg tgtactttac tctaacccat ctgctcacgg tgcaagtgca gtagcagttg
      961 cattggctga tcctgacctt aaagcacaat ggattgcgga attagatgaa atgcgtaacc
     1021 gtattaaaga aatgcgtagc caattagtgc agaaattaaa agaaaaaggg gcaaacaaag
     1081 acttctcttt cattactgag caaaatggta tgttctcatt cagtggctta acaccggagc
     1141 aagtggataa gttaaaagat gagtttgcaa tttatgctgt gcgttcaggc agaatcaatg
     1201 tagcaggcat taccagcaaa aacattgatg ctcttgccga tgcgattgtg aaagtgcttt
     1261 aattaaacct taaagatata tagaggcata agcctgagtg cttgtgcctc ttttttatct
     1321 tttaggtaca agtgtggaca cttgcaccaa cgttgattat tcgtagaact aggtttccaa
     1381 ccaaagcata aaatctgcta ccgtatgaaa tgagccgaac accagcacaa tatcattttc
     1441 gttggctgtt tcaaacaata ctcggcttgc ctgtgccaca ttttcatagc tacaagcggt
     1501 tgaatttggc aaaacgttta ccaatttcgc taacaccgcc tcgcctgttt gtccacgcca
     1561 acaatctagc cctgcacaat gccattcatc aataatatta gctaatggct cgacaatacc
     1621 ggataaatcc ttatcttcta acgcactaaa caccgcatag attttttgat ttggttgctt
     1681 taactcccgc agtttgtcag ctaaataacg tgctgcgtgt gggttatgcc ctacatcaat
     1741 aattactttt gcagccggtt taggttgaga aaaatgagta aaatcggtat ccgtcagggt
     1801 ttgaaaacgc cctgtcattt gagcttcatt taaggcttgt cgaataatct tttcatcaat
     1861 ttcaaatggc agttgcatta atactgctaa tgcggtgccg gcgtttggaa tcggaataag
     1921 cgggattggt aaatcggtaa aggatttttc ttcagaatac caatgaaaca gattattctt
     1981 aatttcaaac tgccagtctt taccccggta aaaagcgtga caatttaacg aatcagcaat
     2041 ctgtttaatc gaatgagggc aatcaggctc gccgatgaca accggaatat tttcacggaa
     2101 aatgccggct ttctcacgcc cgatgtcttc acggttatcg cctaaaaatg caacgtggtc
     2161 gatatcaatc gagataatca cggcaaggct tggatcaata atattagtgg catctaatcg
     2221 cccacctaat ccgacttcta aaatcacaat atcgagctga ttttgtttga atagctcaaa
     2281 tgcagacagc gtactaaact caaaataagt gagtgaagcg gtcttttttg cattaatttt
     2341 tgcaaatgct tggacgtggt cggcatcagg taatacttcg ccgttaattc gcacccgttc
     2401 attatagtga attaagtgcg gtgaagagta aacaccaacc cgaaatccgg cttttaataa
     2461 ggtaacttct aacaaacggc aggtcgaacc cttgccgtta gtaccggcaa cggtaatcac
     2521 ataaggggca ggcttgagta aatccagctc tgttgcgacc ttacgaatac gatctaagcc
     2581 catatcaatc ggtttagaat gggcttgttc taaataggaa agccacgttt ccaaagaatc
     2641 cgtggcttta ggtatgctta atgtattcat tcagatattt tattctgcgt tttctacaac
     2701 caattccgcc actttaaacg gcgttggttg attggttaat tttgcacaaa gacgggaaag
     2761 ggtatcacgc atctctttac gatgcacgat catatcaact gccccgtgtt ctaataagaa
     2821 ctcggcacgt tggaaacctt ccggcagttt ttcacgtacg gtttgctcaa ttacacgagg
     2881 accagcaaag ccgattaggg cttttggctc agcaatattc acatcgccca gcattgccaa
     2941 acttgcggaa accccaccta aagttgggtc ggttaataca gaaataaacg gtacgccctg
     3001 ctctttcatt ttggctaaaa tcgcactggt ttttgccatt tgcattaaag agaataacgc
     3061 ctcttgcata cgagccccgc ccgatgccga aaaacagata aacggaattt tttcagctaa
     3121 agctttttcc gcagctttca caaattttgc acctactaca gaccccattg aaccgcccat
     3181 aaactcaaag ttaaaggagg ccgtaaccac cggcatatta tgcaatgtac cggcaagcac
     3241 gataaaagaa tctttctcac cggtttgttt ttgcgcggca gttaaacgat ctttatattt
     3301 ctttaaatct ttaaatttca acacatcttc cggctctaag tcggcagcga tttcgaccgc
     3361 agaatcttta tctaacaaat tcaataaacg ggtgcgggca tcaatacgca tatgatgatc
     3421 gcattttgga caaacctgtt ggttgcgttg taattcttcg ctatagagaa cttgttcaca
     3481 acttgtgcat tttgtccata caccttccgg cacttttgat tttgcattgc ttgatgatga
     3541 agagtctcta cctaaaattc tgtctaacca gctcattatt attccttttg gattgagttg
     3601 ttgggttcac taaatggttg ctattaaagc ataatttatc ggtttttgat atgttttctt
     3661 gacatatcag atcactaact atgtgtataa gttcgataaa aaaacgcaat cagaagaatg
     3721 attaacatca ccacaatttg aattaagcgt tttttggtta atttttccgc tgccattgct
     3781 ctgctcatac ttaataaatt tccgcattat aagcgaaaaa gcacgggcta tgtagaattt
     3841 gcaaaatttt gatcaaaaat aaccgcttgt aaaaaggaaa tactatggca accattgaac
     3901 aatttcttga ggttgtaaac caacttcgtc accctgaaca cggctgcccg tgggatctca
     3961 aacagaattt tgacacgatg ttccccactt attggaagaa acctacgaag tagcggaagc
     4021 gattcacacc caagatcgca ctgccttgcg tgaagagtta ggcgatttat tactgcaagt
     4081 ggtattttta agccaattag cgaaagagga aggcagtttc acttttgatg atgtagtaac
     4141 ggatattcac gataaactga tttaccgcca ccctcacgtt tttggtgatg tgaaagctac
     4201 taacagcgaa gaggccttac aaagttggga agcacaaaaa gcgaatgatg caaaacaccg
     4261 tagccaagat tctattttta gatgatttac cttttgcttt gcctgctctt acccgtgcaa
     4321 ataagctaca aaaacggtgt gcaaaagttg gattcgattg ggataaccct cacgatgtgc
     4381 tggcaaaagt cgaagaagaa ctcgatgaag tcaaagcaga aatcgcacaa tatccggctc
     4441 gctccatcga gcttgctgaa gaattaggcg atctcttgtt tgcgattgta aatttatgcc
     4501 gccattatca taccgatgcc gaggaaattt tacgcaatgc aaatctaaaa tttgaacatc
     4561 gctttcgaaa agttgaaaaa tctgtgaaaa aatcgggaag aactgtaaaa gaatgtaaat
     4621 tagaagaact agatgtaatt tggcacaaaa taaaagtggt aaaataaaaa gcaccaattg
     4681 tta
//
LOCUS       DANLZD010000164         4641 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.165, whole genome shotgun sequence.
ACCESSION   DANLZD010000164 DANLZD010000000
VERSION     DANLZD010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4641
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.165"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            3..320
                     /gene="trxA"
                     /locus_tag="PXE26_002301"
     CDS             3..320
                     /gene="trxA"
                     /locus_tag="PXE26_002301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HDL5594842.1"
                     /translation="MHTTDATFEQDVLKSDVPVLLDFWAPWCGPCRMIGPVLDDLSVD
                     AQFDGKVKIVKMNVDENPSVPAQFGVRSIPFLLLFKNGEVIAQQVGAIPHAQMAEFIK
                     QAL"
     gene            491..1714
                     /gene="hflK"
                     /locus_tag="PXE26_002302"
     CDS             491..1714
                     /gene="hflK"
                     /locus_tag="PXE26_002302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HDL5594843.1"
                     /translation="MSWNESGNQQDPWGKPGQKKAEPKPEQQEQGSQQEPTNNQRNEQ
                     QPPDLEEVFSSLLKKMGGGKGPNNSSNQPSASLGKFLPVVLGLAAVVWVGSGFYTVQE
                     AERGVVTRLGKLNDIVLPGLNWKPTFIDSVTRVNVERVSELNTSGSMLTQDENMVQVE
                     MTVQYRVEDPAKYLFSVSNPDDSLKQATDSALRYVIGHMTMDEILTTGRATVRERTWS
                     TLRDIIKTYDMGLLVTDVNFQYARPPEEVKAAFDDAIKAQEDEQRLIREAEAYARGEE
                     PIARGQAQRTIEQAQAYKEAVVLNAKGEVERLSQLLPEYKASPELTRERLYIQTMEKV
                     MKNTPKVVMDSSGNNLNVLPFDKLMNSSSVIKAEQPAAAQVVTPQVVQPQVQPRTQIQ
                     PQQAEQQEPTRKGRF"
     gene            1717..2604
                     /gene="hflC"
                     /locus_tag="PXE26_002303"
     CDS             1717..2604
                     /gene="hflC"
                     /locus_tag="PXE26_002303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HDL5594844.1"
                     /translation="MRRLLVPILAVVAFVVLQAITIVNEGERGIMLRFNKVHRDSDQK
                     VVVYEPGIHFKVPFIDSLKVLDARIQTLDGQEDRFVTVEKKDLLVDSYVKWRISDFGQ
                     FYTSTGGDYQKAADLLRRKVGDRLRSEIGSRTIKDIVSGSRGELMAGAQKALNAGEDG
                     AERLGIEVVDVRVKQINLPNEVSSSIYQRMRAERDAVAREHRSQGNEKAEVIRAEVDK
                     KVVLILANANKTAQALRGEGDAQAAKLYSEKFGNEPEFYSFIRSLKAYEDSFAEGQNN
                     MMLLKPNSEFLRFMQAPTK"
     gene            2778..4076
                     /gene="purA"
                     /locus_tag="PXE26_002304"
     CDS             2778..4076
                     /gene="purA"
                     /locus_tag="PXE26_002304"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010869263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HDL5594845.1"
                     /translation="MGKSVAILGAQWGDEGKGKIVDLLTDRVKYVVRYQGGHNAGHTL
                     IINGEKTVLRLIPSGILRDNVTCLIGNGVVLSPEALMKEMGELEERGINVRERLKISE
                     ACPLILPYHVAMDHAREAALGKNKIGTTGRGIGPAYEDKVARRGLRVSDLFDKEHFAA
                     KLKDILDYYNFQLVNYYKVEAVDYQKTLDDVFAIADVITGMVADVTTLLHEARENGDN
                     ILFEGAQGTMLDIDHGTYPFVTSSNTTAGGVATGSGYGPRHLDYVLGIIKAYCTRVGS
                     GPFTTELFDDVGAEIARKGNEFGAVTGRPRRCGWFDAVAVRRAVQINSISGFCMTKLD
                     VLDGFKELKICVAYKMPNGKIVEYAPLAAKDWEGVEPIYETMPGWSENTFRVTKREDL
                     PQAALDYIKRIEELVGVPVDILSTGPDRVETMILRDPFAA"
     gene            complement(4236..4306)
                     /locus_tag="PXE26_002305"
     tRNA            complement(4236..4306)
                     /locus_tag="PXE26_002305"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4276..4278),aa:Arg,seq:tct)
     gene            complement(4455..>4641)
                     /locus_tag="PXE26_002306"
     CDS             complement(4455..>4641)
                     /locus_tag="PXE26_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594846.1"
                     /translation="DTDGEVTNFVIITSEYKYIDAQSAKEITDAPLTKEDIGKTPTQI
                     MLGRIYKYLKETGQIVV"
BASE COUNT         1425 a          836 c         1069 g         1311 t
ORIGIN      
        1 tcattcatac aacagatgct acatttgaac aagatgtttt aaaatcagat gtaccggtat
       61 tattagactt ctgggcgcct tggtgtggtc cttgccgtat gatcggcccc gtacttgacg
      121 atttatctgt tgatgcacaa tttgatggta aagtaaaaat tgtcaaaatg aacgtagatg
      181 aaaatccatc tgtaccagca caatttggcg tacgcagcat tccattttta ctattattca
      241 aaaatggtga agtgattgcc cagcaagttg gtgcaattcc gcacgcccaa atggctgaat
      301 ttatcaaaca agcattataa ttttaagagc aatactaggg cgaatttatc gccctatttt
      361 tttgcaaata aatagtgaaa aaagaccgct tgtttcagat aaacctagtc aaaagcttac
      421 taaataggta caatcactaa cttgcattct aagctttaaa gtgcgattcg attttatttt
      481 ggagatattt atgtcgtgga atgaatcagg caatcagcaa gatccttggg gtaaaccggg
      541 gcagaaaaaa gctgagccaa agcctgagca acaagaacag ggttcacaac aagagccgac
      601 caataatcaa agaaatgaac aacagccccc tgatttagaa gaagtattta gcagtttatt
      661 aaaaaaaatg gggggtggaa aagggcctaa taatagttca aatcaaccta gtgcaagctt
      721 agggaaattt ctacctgtgg ttttaggtct tgcagcagta gtttgggttg gctcaggttt
      781 ttacactgtg caagaggctg aacgtggtgt ggttactcgt ttaggtaagc tgaatgatat
      841 cgtgttgcca gggttgaatt ggaaaccgac ttttattgat tcggttacaa gagtaaacgt
      901 agaacgtgtt tcagagctga acaccagtgg ctcaatgctg actcaagatg aaaatatggt
      961 gcaggtagaa atgacggttc agtatcgtgt ggaagacccg gctaaatatc tgtttagtgt
     1021 gagcaaccct gatgacagct taaaacaagc aacagacagt gccttgcgtt atgtgattgg
     1081 tcatatgacg atggatgaaa ttttaaccac agggcgtgca accgtgcgtg aaagaacgtg
     1141 gtcgacattg cgtgatatta tcaaaaccta tgatatgggt ttattggtaa cagacgtaaa
     1201 cttccaatat gcacgaccgc ctgaagaggt gaaagccgcc tttgatgatg caatcaaagc
     1261 acaagaagat gagcaacgct taattcgtga agcggaagcc tatgcaagag gtgaagagcc
     1321 gattgcacgt ggccaggcac agcgtacgat tgagcaagct caagcttaca aagaagcagt
     1381 tgtgttaaat gcgaaagggg aagtggagcg tttgagtcaa ttattacctg aatataaagc
     1441 ctctccagag ctgactcgtg aacgtttata tatccagaca atggaaaaag tcatgaaaaa
     1501 tacgccgaaa gtggtgatgg attcaagtgg taataatttg aatgtattgc ctttcgataa
     1561 gctaatgaat tcttcatcgg taataaaagc ggagcagcct gcggcggcac aagtagttac
     1621 accacaagtt gttcagccgc aagtacagcc aagaacacaa attcagccgc aacaagcaga
     1681 acaacaagaa ccaactcgta aggggagatt ttaatcatgc gtagattatt agtacctata
     1741 cttgctgtag ttgcttttgt tgtgctacag gcaatcacca ttgtaaacga gggcgagcgt
     1801 ggcattatgt tacgttttaa caaagttcat cgtgatagcg atcaaaaagt ggtggtatat
     1861 gaaccgggga ttcactttaa agtaccattt atcgatagtt taaaggtatt agatgctcgt
     1921 attcaaactc tagatgggca agaagaccgt tttgtaacag tcgagaaaaa agatttatta
     1981 gtggactcct atgtaaaatg gcgaatcagt gattttggcc aattttatac ctctactggg
     2041 ggggattacc aaaaagcggc ggatttatta cgccgtaagg taggggatcg tctgcgttcc
     2101 gagattggtt ctcgaaccat taaagatatt gtatccggct ctcgtggtga gttaatggca
     2161 ggagcccaaa aagcgctgaa tgccggtgaa gatggagcag agcgtttagg aattgaagtg
     2221 gttgatgtgc gagtgaagca aatcaactta ccaaatgaag tttcttcttc aatttaccaa
     2281 cgtatgcgtg ccgagcgtga tgcggttgct cgtgaacacc gctcacaagg taatgagaaa
     2341 gcagaggtaa ttcgtgccga agtggataaa aaagtggtgc tgattttggc aaatgcgaac
     2401 aaaactgccc aagccttgcg aggtgaaggt gacgctcaag ctgcaaaact ctattcagag
     2461 aaatttggta acgagccgga attttacagt tttattcgta gtttaaaagc ctatgaagat
     2521 agctttgccg aaggtcaaaa taatatgatg ttattaaagc caaacagcga attcttacgc
     2581 tttatgcaag caccgacaaa ataattgtat ctataaaacc cgatcttgta tcgggttttt
     2641 aattttcatc cctattctga tcataacaag cggtaaattt tggctgattt tttgcaaaaa
     2701 atttgaaaaa attgaccgct tgcgatatga agttataatg ggtttcgtta ttcatcctaa
     2761 ctaaaagagg catttctatg ggtaaaagtg ttgctattct tggcgctcag tggggcgatg
     2821 agggaaaagg caaaattgtt gatttattaa cagatcgtgt gaaatatgta gtacgttatc
     2881 aaggtggaca taatgcaggg cataccttaa tcattaatgg tgaaaaaacc gttctgcgtt
     2941 taattccatc gggtattttg cgtgataacg tgacttgttt aatcggtaat ggtgtagtgc
     3001 tttctccaga ggcattaatg aaagagatgg gggagctaga agaacgaggc attaatgtgc
     3061 gtgagcgttt aaaaatttct gaagcttgcc cgttaattct gccttatcac gttgcgatgg
     3121 atcacgctcg agaagcggca cttggtaaaa acaaaattgg tacaacagga cgtggtattg
     3181 gcccagctta tgaagataaa gtcgctcgcc gtggtttacg tgtcagcgat ttattcgaca
     3241 aagaacattt tgccgcaaaa ttaaaagata ttttagatta ctacaacttc caattagtca
     3301 attattacaa agttgaagcg gtagattatc aaaaaacctt agatgatgtg tttgcgattg
     3361 cggatgtgat taccggaatg gttgccgatg tgacaacttt acttcacgaa gcacgtgaaa
     3421 acggcgacaa tattttattt gaaggggctc aaggcacgat gttagatatc gaccacggta
     3481 cttacccgtt cgtaaccagc tcgaatacga cagcaggcgg tgtggcaacc ggatcaggct
     3541 acggtcctcg tcatttagat tatgtattag ggattatcaa agcctactgt acccgtgtag
     3601 gtagtggacc gttcaccacc gaactatttg acgatgtagg tgctgaaatt gctcgcaaag
     3661 gtaatgagtt cggagcggta accggtcgcc ctcgccgttg tggctggttt gatgccgtag
     3721 ccgttcgccg agcagtgcaa atcaactcca tttcaggctt ctgtatgact aaactcgatg
     3781 ttttagacgg attcaaagag ctaaaaatct gcgttgccta caaaatgcca aacggaaaaa
     3841 ttgtcgaata tgcccctctt gcagcaaaag actgggaagg tgttgaacca atttatgaaa
     3901 caatgccggg ttggtctgaa aatactttcc gtgtgacaaa acgtgaagat ttaccacaag
     3961 ccgcattaga ttacattaaa cgtatcgaag agctggtcgg tgtgccggta gatattcttt
     4021 ctacaggtcc ggatcgtgtc gaaacgatga ttttgcgtga tccttttgca gcttaataaa
     4081 agataaaata aagccattta gtgagataga gctagatggc ttttttgttt gaaccagtaa
     4141 actttacttt ggcacaattt tgtcacaata cagaaaatag ttctttagcg tgagtttttg
     4201 aggctgtgta agtatttgaa tttaaaagaa tttaatggca cgccctaaag gattcgaacc
     4261 tttgacccac gccttagaag ggcgataggt attttataaa aggcgtttat tttaactaat
     4321 aaaaacaaag acttatagag ataacccctc tatattacct accattattt cacatctttt
     4381 tacattaaat aacaccattt acggtacatt tatggaacac gttggtgatg agctagtctt
     4441 caaaagttac taaattaaac tacaatctgc cccgtctctt ttaagtactt atagatacgc
     4501 cctaacataa tctgcgttgg cgttttgcca atatcctctt ttgttagcgg tgcatcagta
     4561 atctccttgg cggactgtgc atcaatgtat ttgtactcac ttgtgatgat tacaaagttt
     4621 gttacttctc catcggtatc a
//
LOCUS       DANLZD010000165         4501 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.166, whole genome shotgun sequence.
ACCESSION   DANLZD010000165 DANLZD010000000
VERSION     DANLZD010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4501
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.166"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            220..1539
                     /locus_tag="PXE26_002307"
     CDS             220..1539
                     /locus_tag="PXE26_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HDL5594847.1"
                     /translation="MNHLLYSVEDKPPFGLSLLLASQHLLAALGGIIAVPLVLGNVLK
                     LSTADTIILVNAALLISGIVTIIQCRGIGPIGIRLPSVMGTSFTFVAAALAIGFSESG
                     IAGIMGASLVGSLVMIIGSFFMPYIRKLFPPVVTGTVIMMIGLSLIPVAVDWFAGGQR
                     TDPHYATPENLIMASFVLIIVVALVQWGKGIFSAAAIVIGMMIGYIVSLALGWVSFNG
                     VKEAQLFALPQPLHFGLEFPISGIIGMSIAYLVTIVESSGNFLALGNATKTEITGKHL
                     RGGVLCDGLGSAFAAIMSTTPFSSFSQNIGVISLTGVASRYVVAFTGALLVLAGLFPV
                     FGALIVSIPLPVLGGAGLMMFAMIIAAGIQMLDNIQRSKRNGLIIAISIGCGLAVTTR
                     PELLDKLPHFFKEVFGSGITVGSLLALILNLVLPEDKITKKENKSDE"
     gene            complement(1709..3652)
                     /gene="ftsH"
                     /locus_tag="PXE26_002308"
     CDS             complement(1709..3652)
                     /gene="ftsH"
                     /locus_tag="PXE26_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HDL5594848.1"
                     /translation="MVKNILLWVVIAIVMMTAYEGFNSNFSGSSNTVPYSTFLSDIKE
                     NRLKGVDFKQNDDTILVTKNDGATYQTVMPMYDEYLMADLAKTNAVITGQPAERRGLL
                     SQILISWFPMLLLIGFYVFYMRQMQGGGGRGAMGFGKNKAKMLTADEVKTRFSDVAGC
                     DEAKEEVGEVVEFLRDPTKFQKLGGRIPKGILMVGPPGTGKTLLAKAIAGEARVPFFT
                     MAGSDFVEMFVGVGASRVRDLFDQAKKNAPCIIFIDEIDAVGRKRGGAGFSGGHDERE
                     QTLNQMLVEMDGFEGSEGVIIIAATNRADVLDDALTRPGRFDRQVTVDLPNVKGREQI
                     LKVHLKKVPLAEGVDPMQIARGTPGYSGAQLANLVNEAALFAARKNKRVVMMEDFEEA
                     RDKINMGPERRSNTMTEKEIINTAYHEAGHVIVGYLMPEHDPLNKVTIVPRGQALGFA
                     QFLPEGDRVSETFTKLESQLSTLFAGRIAEGLIFGEDKITTGASSDIHRATQIARAMV
                     TQWGFSKELGPIFYQNEDGMGAIKGVSEESQKLIDVEMRKIIDRNYQRAKQTLEENMD
                     ILHAMKDALLKYETLDSKQIDDLMARRPVGEPSGWTDTPTKDDNATPPSGEQAADVSS
                     TLEDNPNKDNNIGDSLADTKAEH"
     gene            complement(3773..4399)
                     /gene="rlmE"
                     /locus_tag="PXE26_002309"
     CDS             complement(3773..4399)
                     /gene="rlmE"
                     /locus_tag="PXE26_002309"
                     /EC_number="2.1.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase
                     RlmE"
                     /protein_id="HDL5594849.1"
                     /translation="MGRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQT
                     DRLFKPGMTVVDLGAAPGGWSQYVVTQIGSKGRVIACDILDMNPIVGVDFLQGDFREE
                     SVLNALLERVGEDKVNVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLATKGSF
                     VVKVFQGEGFDEYLREIRSLFSVVKVRKPEASRDRSREVYIVATGYKG"
BASE COUNT         1229 a         1022 c          832 g         1418 t
ORIGIN      
        1 gattgccttt accagtaaat tttttgttac aactggaaag aaattggtac aaacattcgg
       61 attagctttg caaaaagcgt aaaaaatctt accgcttgtc atttatcagt tagggaaaat
      121 aaaaaatcac tctcttatat aaaaacaatt acgcaaacga ttgcttatta aaaaaacttc
      181 agtataatgc cgacattttt taactctcga ggaatcacta tgaaccattt actttattct
      241 gtcgaagaca aaccgccttt cgggctgagc ttattgcttg cctcacaaca tttattagcc
      301 gctttaggtg gcattatcgc tgtaccttta gtgctaggga atgtactcaa actctctact
      361 gcggatacta taatcttagt taatgctgca cttttaattt caggcatcgt cactattatt
      421 caatgtcgag gtattggccc aatcgggatt agactaccga gtgtaatggg aactagcttt
      481 acgtttgttg cagcagcatt agcgattggt ttcagtgaaa gtggcattgc cggcattatg
      541 ggagcctctt tagttggctc tctagtgatg attatcggca gtttttttat gccttatatc
      601 cgtaagcttt ttccacccgt ggtaacaggt actgtcataa tgatgattgg cctaagttta
      661 attcctgttg cagtagactg gtttgctggt ggtcagcgta ctgatccaca ctatgcaacc
      721 ccagaaaatc ttataatggc tagttttgta ttaattattg tcgttgcttt agtacaatgg
      781 gggaaaggta ttttttcagc tgctgctatt gtgattggta tgatgatagg ttatatcgtt
      841 tcgctagctc tgggttgggt aagttttaat ggcgtgaaag aagcacaact ttttgcgtta
      901 ccacaacctc tacattttgg cttagaattt ccaatctccg gtatcatcgg aatgtcaatt
      961 gcttatttag ttaccattgt agaatctagc ggaaatttct tagcactagg caatgcaact
     1021 aaaactgaaa ttaccggaaa acacttacgt ggaggtgtat tatgtgatgg tttaggctca
     1081 gcatttgcgg caattatgtc cacaactccc ttttcttctt tctcacaaaa tattggggtc
     1141 atttcattaa ccggtgtagc cagtcgctat gttgtagcat ttacaggcgc attacttgta
     1201 ctagccggtt tatttcctgt atttggagca ttaatcgtgt ctatcccgtt acctgtgctt
     1261 ggcggtgcag gcttaatgat gtttgccatg attatcgcag ccggtatcca aatgttagat
     1321 aatattcaac gtagcaaacg aaacggttta attattgcta tctctatcgg ttgtgggctg
     1381 gccgtaacaa ctcgacctga gctattggat aagcttccac acttctttaa agaagttttt
     1441 ggctcaggta ttacggtcgg ctccttatta gcacttattt tgaatttagt tttacctgaa
     1501 gataaaataa ccaagaaaga aaataagagt gatgaataaa tcaccctaaa aaaacaagga
     1561 cagctcacaa tacaactttg atgctgtcct ttattcccat agagagcata tttaaattta
     1621 ggttaataaa aaaatctgca ctctatattg gtgtttacct ttagagtaca gatttcttct
     1681 tattctaact ttctagcaaa caattagatt aatgttccgc tttggtatcg gctaacgaat
     1741 ccccaatgtt attatcttta tttggattat cctctaaagt tgaacttaca tccgctgcct
     1801 gttcaccact tggtggagtg gcgttatcgt ctttagttgg ggtatctgtc caacctgatg
     1861 gttcacccac cggacggcgt gccattaaat catcaatttg cttgctgtct aaggtttcgt
     1921 atttcaataa ggcatctttc attgcgtgta agatgtccat attttcttcc aaagtttgct
     1981 tcgctcgttg atagttgcgg tcaatgatct tacgcatttc cacatcaatc aatttttgcg
     2041 actcttccga tacgccctta attgcaccca ttccatcttc attttgatag aaaatcgggc
     2101 ctaattcttt tgagaagccc cattgagtaa ccattgctcg tgcaatttgg gttgctcgat
     2161 gaatatcaga ggaagcccct gtggtaattt tatcttcacc aaaaatcaag ccctcagcaa
     2221 ttcgccctgc aaatagggtg gaaagttggc tttccaattt ggtaaatgtt tcgcttacac
     2281 ggtcaccttc cggtaagaat tgagcaaaac ctaacgcctg accacgaggc acaattgtca
     2341 ctttattcag cggatcgtgt tccggcatta aatagccaac aataacgtgt ccagcttcgt
     2401 ggtaagcagt attgatgatc tctttttccg tcattgtatt tgaacggcgt tccggcccca
     2461 tattgatttt gtcacgggct tcttcgaaat cttccatcat taccacacgt ttattcttac
     2521 gggcagcaaa taaggcagct tcgttcacca agtttgctaa ttgagcacca gagtaacccg
     2581 gcgtaccacg agcaatttgc atcgggtcaa ctccctctgc aagcggtact tttttcaagt
     2641 gaactttcaa aatttgctca cgccctttca cgttcggcaa atcgaccgtg acttggcggt
     2701 cgaaacgccc cggacgagtt aaggcatcat ctaacacatc ggcacggttg gttgcagcga
     2761 tgataatcac accttcagag ccttcaaagc cgtccatctc aactaacatt tggttgaggg
     2821 tttgttcacg ctcatcgtgt ccaccgctga aacctgcacc accacgttta cgccctaccg
     2881 catcaatttc atcaataaaa ataatacaag gggcattttt cttggcttgg tcgaataaat
     2941 cacgcacccg tgaagcaccc acacctacaa acatttccac gaagtcggaa cctgccattg
     3001 taaagaatgg cactcgtgct tcacctgcaa tcgctttcgc caataaggtt ttacccgtac
     3061 ccggagggcc taccatcaag atcccttttg gaatgcgccc acctaatttt tgaaatttag
     3121 ttgggtcacg caaaaactca acaacttcgc ctacttcttc tttggcttca tcacagccgg
     3181 ctacatcaga aaatctggtc ttaacttcgt ctgcggtcaa cattttggct ttatttttcc
     3241 caaagcccat tgcaccacgt cctccgccac cttgcatttg tcgcatataa aacacataga
     3301 aaccgattaa cagcaacatt gggaaccaag aaatcaaaat ttgcgagagc aagccacgac
     3361 gctcagcagg ctgaccggta atcactgcat tggtttttgc taaatctgcc attaagtact
     3421 catcatacat cggcattacg gtttggtagg ttgcaccatc atttttcgtc accaaaatgg
     3481 tgtcatcatt ctgtttgaaa tcgacccctt ttaaacgatt ttctttaata tcgcttaaaa
     3541 aagtcgaata tggcactgta tttgagctac cactgaaatt agaattaaaa ccttcatagg
     3601 ctgtcatcat cacaatggca atcaccaccc aaagtaaaat atttttaacc atatcgttca
     3661 aggttaatcc cctatctgct gaataaaaaa ctgttcaaga ttactataaa agcggtcgaa
     3721 ttttccaatt tttttgcaaa atgttaataa aaaatgaccg cttgcttgtt ttctagcctt
     3781 tataacctgt cgctacaata taaacttctc gagaccgatc tcgagacgcc tccggttttc
     3841 tgacttttac cacactaaag agcgagcgga tttctcgaag gtattcatca aatccttcgc
     3901 cttggaatac cttaaccaca aaactgcctt tggttgctaa tacttggcga cacatatcca
     3961 atgccaattc cactaaatac attgcacgag gaatatcaac cgacggcata ccgctgaaat
     4021 tgggagccat atccgacatc accacattca ctttgtcttc gcctactcgc tcaagtaacg
     4081 cattcagcac cgattcttca cggaagtcgc cttgtaagaa atccacgcct acaatcgggt
     4141 tcatatctaa aatatcacaa gcgattactc tgcccttact gccgatttgc gtcaccacat
     4201 attgcgacca accgcccggt gcggcaccga gatccaccac cgtcattccc ggtttgaata
     4261 aacggtcggt ttgttgaatt tcatctaact taaaatacgc ccgtgaacgc aatttttgtt
     4321 tatgtgcttt ttgcacaaat tgatctttaa aatgttctgc aagccaacgt gatgaactcg
     4381 cacttcgttt tctacccatt tgttcttcta tcttaattaa ttcaacgatt tataataagg
     4441 gttaaattag caaattcaag agatgttcta aaatttagct cggcttatta tgcttaatta
     4501 a
//
LOCUS       DANLZD010000166         4351 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.167, whole genome shotgun sequence.
ACCESSION   DANLZD010000166 DANLZD010000000
VERSION     DANLZD010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4351)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4351)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4351
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.167"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(71..688)
                     /locus_tag="PXE26_002310"
     CDS             complement(71..688)
                     /locus_tag="PXE26_002310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3164 family protein"
                     /protein_id="HDL5594850.1"
                     /translation="MSKVTIGNEIYWKDADGNLKPEALVKEIDKERDELVRQFVSKAQ
                     ALSKALGDFKQSVFDDVGAFVSLSADKYGVKIGGAKGNITLFTYDGEYKLQLAVQENI
                     RFDERIHAAKALIDECLHDWSEGAKPELKALIDNAFEVDKEGNLSTAKILSLRRVEID
                     DARWNQAMTAISDSVQVIGSKGYIRFYKRDENGKYQPISLDMAGV"
     gene            complement(701..892)
                     /locus_tag="PXE26_002311"
     CDS             complement(701..892)
                     /locus_tag="PXE26_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594851.1"
                     /translation="MKKRRMIYALYVGEENVADGTAEELAERLGVEAKTVRFMSSPAH
                     NKRVKYNGKAIRTVKVGLE"
     gene            complement(895..1215)
                     /locus_tag="PXE26_002312"
     CDS             complement(895..1215)
                     /locus_tag="PXE26_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594852.1"
                     /translation="MQKVYSEKAGEMMNPLNAFIHDSLVKLEIATLECEAMELEVERV
                     EFEAKSPPRLVLRDNCKTQDLVKNGLASLFGMKTKGGRRYDSYQMQVRGVKCVWESER
                     VTKV"
     gene            complement(1226..2107)
                     /locus_tag="PXE26_002313"
     CDS             complement(1226..2107)
                     /locus_tag="PXE26_002313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5594853.1"
                     /translation="MKNQELRALMDSKGYQQKQVAQLLGVSVATVSLYLKGDYNGNVA
                     EMDRKVDELIERDKAKVVEAKYNAAFVPTLAARRGMEVMQFAHIEGEINVIFGAAGLG
                     KTQMLKEYERRNSSATLIEVDPSCTPKVLLRKIAEAVGANARGVNNELLESIVNKLKG
                     SERLLMIDEAELLSTRSLEFIRRIHDLTSVGVVLAGMPRLLVNLKGKNNELAQLYSRV
                     GFACDLGNALSEEDLGLLAESALGTNEFNAPLIKACHGNARRLSKLMRGVVRSSEINQ
                     TPISKDLVEQYSKMLIS"
     gene            complement(2111..4048)
                     /locus_tag="PXE26_002314"
     CDS             complement(2111..4048)
                     /locus_tag="PXE26_002314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5594854.1"
                     /translation="MKDWFSAKELAGISGLSKYPTNVTRQAKKEQWATRPLKGVKGGG
                     FEYHINSLPTEVQTEIRSRFMSAVVEAKPKKLPVVRAEVDVGNLTTKQREIADARMAL
                     VAYVLELEGSMSRIKAITYLCNLAKQGEMPPHLAELVAVANAKKTAKRTLSVRTLNGW
                     VVDYCKAENAEQRLKLLAPQVRQETKPEEIWWLSAFLGVYRQKNGICLTEAYREFEVE
                     WAYQYADNPLLLAQCPSLSQVQRAMNKLPLYVKEYGRRTGSHYKQLLSYVKRDWSVLR
                     ANDVWIGDGHSLKLKVAHPIHGKPFTPELTMIVDGAGRKVVGWSLALSENAFAVADAL
                     RHAISLHGVPAIYYSDNGGGEKNKFLDAEITGMLPRLGIRHETGIAGNPQGRGIIERL
                     NKTIGMTIARQFETGYATGADPETVRKTLYAVNSLANAKGELTPLQRKAQGKLPTWQQ
                     LIEVIQSVIDWYNNEHIHSEIRTTPARKYQQMLHAEDVVMLSPIELRDMSRPEFIRKP
                     DRGWVSWNNNHYFNLKLLDFDREEVVIGIDIHNAESVQVRTKDGRFICEAIWNGNTRE
                     AFPVAMVEQQRKERHKRRANLKQQQLDEINAELNPVLTIEQKNDFSLLATARKPKKEV
                     EPIFLTRAEKEDYEKKLAVGG"
     gene            complement(4063..4290)
                     /locus_tag="PXE26_002315"
     CDS             complement(4063..4290)
                     /locus_tag="PXE26_002315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5594855.1"
                     /translation="MNKKKRAQDMHRADIRAELMKKGITFSQLGIENGLSKTTVRNAL
                     DKPYKNGEEIIAKALGKTPAEIWPSRYPDVA"
BASE COUNT         1008 a         1167 c          808 g         1368 t
ORIGIN      
        1 tgaacaaacc ttgtctgtat taaccacaac aggtttatcc gtataattaa cattaaaagt
       61 aataaacatt ctaaaccccc gccatatcta aactaatcgg ctgatacttt ccgttttcat
      121 cacgtttata aaaacggata taacctttac taccgatcac ttgtacgcta tctgaaatcg
      181 ctgtcattgc ttgattccat cttgcatcat caatctcaac acggcggaga gagagaattt
      241 ttgctgtaga taaattacct tccttatcca cctcaaacgc attatcaatt aaggctttaa
      301 gctccggttt tgccccttcc gaccaatcgt gcaagcattc atcaatcaag gcttttgctg
      361 cgtgaatacg ctcatcaaag cgaatattct cttgcactgc taactgcaac ttatattcac
      421 cgtcataagt aaatagtgtg atattgcctt ttgcaccgcc aatttttact ccatatttgt
      481 cagccgatag gctgacaaaa gcccccacgt catcaaatac ggattgttta aaatcaccta
      541 acgctttgct taacgcttgt gctttgctta caaattggcg aactaattca tcacgttctt
      601 tgtcgatttc ttttactaat gcctccggct ttaaattgcc atcagcatct ttccagtaaa
      661 tttcattacc gattgttact ttactcataa tacttcctct ctattccaac ccgactttca
      721 cggtgcggat tgctttaccg ttatatttca ctcttttgtt gtgagcaggg gacgacataa
      781 accgcactgt tttcgcctcc acccccaacc gttctgctaa ctcttccgcc gtaccgtcag
      841 ccacattctc ttcgccaaca tacagggcat aaatcattcg ccgttttttc atttctacac
      901 cttcgtaaca cgttcagact cccacacgca tttcaccccc cgcacctgca tttgatagct
      961 gtcataccgt ctgccgcctt tggttttcat tccaaacagg cttgccaagc cgttcttgac
     1021 taaatcctgt gttttgcagt tatcccgtaa gaccaagcgg ggtgggcttt tcgcttcaaa
     1081 ctccactcgt tcaacttcca actccatcgc ctcacattcc aaagtggcaa tttctaactt
     1141 cacaaggctg tcgtggataa acgcatttaa ggggttcatc atttcgcctg ctttttcgct
     1201 gtaaaccttt tgcataactt gctccttagc taatcaacat cttgctatat tgctcaacca
     1261 aatctttact aattggtgtt tggttaatct cgctagaccg caccacgcca cgcattaact
     1321 tacttaatcg gcgggcattg ccgtgacaag ctttaattag cggggcatta aattcatttg
     1381 tacctaacgc actttcggct aatagcccca aatcttcctc gctcaaggca tttcccaaat
     1441 cacaagcaaa acctactcgg ctataaagct gtgccagctc attattttta cctttaagat
     1501 taaccaacaa tctcggcata ccggctaaca ccacgcccac gctggttaaa tcgtggattc
     1561 ggcggataaa ctccagcgag cgggtcgaaa gtaattcagc ttcatcaatc attagcaacc
     1621 tttcagagcc ttttaacttg ttcacaatgc tttctaatag ttcgttattt acccctctgg
     1681 catttgcccc caccgcctcg gcaatcttgc ggagcaagac tttaggtgtg caactcggat
     1741 caacctcaat taatgttgca gagctgtttc tgcgttcgta ttctttgagc atttgggttt
     1801 tacctaagcc ggctgcccca aaaatcacat taatttcgcc ttcaatatgg gcaaactgca
     1861 ttacctccat tcctctgcgt gccgccaaag ttggcacaaa agcagcgtta tatttcgctt
     1921 ccaccacttt tgccttatca cgctcaatca gctcgtctac tttgcgatcc atttcagcca
     1981 cattgccgtt ataatcgcct ttgagataca gactgactgt ggcaacggat acacctaaaa
     2041 gctgtgccac ttgtttttgt tgatagcctt tgctatccat taaggctcta agttcttggt
     2101 ttttcatcgt ttagcctccc actgctaact ttttttcgta atcctctttt tctgctcggg
     2161 tcaaaaaaat cggttctact tcttttttcg gttttcttgc cgttgccagc aagctaaaat
     2221 cgtttttctg ctcaatggtt aaaaccgggt ttaattccgc attaatctca tcaagctgtt
     2281 gctgtttaag gttggctcgg cgtttatggc gttctttacg ctgctgttct accatcgcca
     2341 ccgggaatgc ctctcgggtg ttaccgttcc aaattgcctc gcaaataaac ctgccgtctt
     2401 tggtacgcac ctgcacgctc tcggcattgt gaatatcaat cccgatcacc acttcttcac
     2461 ggtcaaaatc cagtaatttc aagttaaaat agtggttgtt attccaactt acccaacctc
     2521 gatccggctt acggataaat tccggtcggc tcatatcccg caactcaata gggcttaaca
     2581 tcaccacatc ttctgcgtgc aacatctgct gatatttgcg tgccggcgtg gtacggattt
     2641 ccgagtgaat atgctcgttg ttgtaccagt caatcaccga ttggattact tcaatcaact
     2701 gttgccacgt tggcaatttg ccttgggctt tacgttgtag tggggttaat tcccctttgg
     2761 catttgccag tgagttcacc gcatacaggg ttttgcgaac ggtttccgga tctgcaccgg
     2821 ttgcatagcc ggtttcaaac tgtcgggcaa tcgtcatacc gatggtttta tttaagcgtt
     2881 caataatgcc tcgcccctgc ggattgcccg caatccctgt ttcgtgtcgg ataccgaggc
     2941 ggggcaacat ccccgtgatt tccgcatcca aaaatttatt cttttcacca ccaccgttat
     3001 ccgagtagta gattgccggc acaccgtgta ggctaatggc gtggcgtagt gcatcagcca
     3061 ccgcaaaggc gttctcactg agtgccagcg accagcccac cacttttcta ccagcaccat
     3121 cgacaatcat tgtcagctca ggggtaaacg gcttaccgtg tatcgggtgg gctactttga
     3181 gcttcagtga gtgaccgtca ccaatccata catcatttgc tcgaagtacc gaccaatccc
     3241 gcttcacata gctcagtaac tgcttgtaat gcgagccggt gcgtctgccg tactctttca
     3301 catacaacgg caacttattc atcgctcgct gtacttggct taggctgggg cattgtgcca
     3361 acagtagcgg gttgtctgca tactgatacg cccattccac ctcaaattct cggtaggctt
     3421 cggtgaggca aataccgttt ttctgccgat atacgcctaa aaaagcactt agccaccaaa
     3481 tttcttccgg cttggtctcc tgccgtacct gtggggcaag cagtttcaac cgttgctcgg
     3541 cgttctctgc cttgcagtaa tccaccaccc agccgtttaa ggttcgcacc gagagtgtgc
     3601 gttttgccgt ctttttagca tttgctacgg caaccagctc cgccaagtgc ggtggcattt
     3661 cgccttgttt ggcaaggttg caaaggtagg ttatcgcttt aatccggctc attgagcctt
     3721 ccaactccaa cacatacgcc accagtgcca ttcgtgcatc agcaatttct cgctgtttgg
     3781 tggtcaggtt tcccacatcc acctctgcac gcactaccgg taactttttc ggcttggctt
     3841 ccaccaccgc cgacataaag cgggagcgga tttcggtttg aacttcggtg ggtaaagagt
     3901 taatgtgata ttcaaaacca cctcctttaa cccctttcaa tggacgagtt gcccattgtt
     3961 cttttttggc ttgtctagtt acatttgttg ggtattttga taagccacta atacctgcta
     4021 attcttttgc actaaaccaa tctttcataa cagctatcct tgttatgcaa catcagggta
     4081 acgactaggc catatttcgg ctggcgtttt tcctaatgct tttgcgataa tttcttcacc
     4141 gtttttataa ggtttatcaa gagcatttct tactgttgtt ttggaaagcc cattctcaat
     4201 ccctaactga gaaaatgtta ttcctttctt catcaattca gctcgaatat cagctctatg
     4261 catatcttga gctcttttct ttttattcat tttgtgagat cctccacatt tagtttattt
     4321 gctacgcttt agcgtacttg attaactaca g
//
LOCUS       DANLZD010000167         4350 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.168, whole genome shotgun sequence.
ACCESSION   DANLZD010000167 DANLZD010000000
VERSION     DANLZD010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4350
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.168"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(156..911)
                     /locus_tag="PXE26_002316"
     CDS             complement(156..911)
                     /locus_tag="PXE26_002316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HDL5594856.1"
                     /translation="MKLKSFKPMFMLLSVAFLTACSSSINPETGVRDDPLEGFNRAMW
                     KVNYDYLDPYVLKPVAKGWKEYVPSPVKTGLINVANNLDEPVSFVNRLIEGEGKKAMV
                     HFNRFWINTVFGLGGLIDWASLDEGLRLNNGQRGLGESLGAHGVPSGSYIMMPAYGAT
                     TPRQGIGSAVETGYSVLTYVGSPWSIAKFVVQGVDTRSKLLEQDALLEQAQDPYVTFR
                     EAYFQNLEFKVKDGNVEQSQQEQLSEEELKNID"
     gene            1066..1383
                     /gene="metJ"
                     /locus_tag="PXE26_002317"
     CDS             1066..1383
                     /gene="metJ"
                     /locus_tag="PXE26_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="met regulon transcriptional regulator MetJ"
                     /protein_id="HDL5594857.1"
                     /translation="MADWNGEYISPYAEHGKKSEQVKKVTVSIPIKVLEILTNERTRR
                     QIKNLRHATNSELLCEAFLHAFTGQPLPNDEDLMKDRADEIPEAAKQKMCELGIDPDE
                     WQY"
     gene            1431..1661
                     /locus_tag="PXE26_002318"
     CDS             1431..1661
                     /locus_tag="PXE26_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF997 family protein"
                     /protein_id="HDL5594858.1"
                     /translation="MYQQLTTEARWAVLLTLIYLLGWVGFAYFSPQGRGIFGFPIWFE
                     LSCIFLPVLFSLVATIVVKKVYKNIDLEVNNE"
     gene            1654..3078
                     /gene="panF"
                     /locus_tag="PXE26_002319"
     CDS             1654..3078
                     /gene="panF"
                     /locus_tag="PXE26_002319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/pantothenate symporter"
                     /protein_id="HDL5594859.1"
                     /translation="MNSEMILPLIAYLIFVFGVAFYAYRKRQGGSFISEYYIGGRSMS
                     GFVLAMTTAATYVGASSFIGGPGAAYKYGLGWVLLAMIQVPAVLLSLGALGKKFALLA
                     RKHNSVTINDMLLARYQNKFVVWIAGLALLLSFFAMMTVQFIGAGRLLETTLGIPYQT
                     AVMIFAITVGLYTFIGGFRAVVLTDTIQGLVMIVGTSILLAGVIYATGGVENAMHTLE
                     AINPQLTTPYGIDERPLDFTFMTSFWVLVCFGLIGLPHIAVRSMACKNSQALHRAMII
                     GTVVIAILMFGMHLSGVLGRAVVPDLKVPDQVIPTLMVQVLPPVVAGIFLAAPMAAIM
                     SSIDSMLIQSSSTLIKDLYLAIKPNAINNEKKIKLFSTITTLTFTVLLVFAALTPPEM
                     LIWLNLLSLGGLEATFLWVIVLGLYWEKANATGAIYSMLAGLSCYVLMTTFKIAIFSF
                     HAIVPSLLIGLIAFLIGNRFAPKV"
     gene            complement(3155..4345)
                     /gene="nhaA"
                     /locus_tag="PXE26_002320"
     CDS             complement(3155..4345)
                     /gene="nhaA"
                     /locus_tag="PXE26_002320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDL5594860.1"
                     /translation="MEKLKEFLKSEASGGVLLLVFAFAAIVCANTSLSDFYFEFLQTI
                     VSVQFGEFALNKPLLLWVNDGLMAVFFTLVGLEVKKELFEGSLSSYKKAIFPAIAAVG
                     GMIVPAIIYWAINQNHPEYHNGWAIPMATDIAFAVGIVALLGTRVPLALKAFLLALAI
                     IDDLGAIVVIAIFYSQEISVQALTIAAIAIIGLVLLNRFKVTSLCAYLVVGLVLWTSV
                     LKSGVHATLAGVIIGFCVPLKGKHGERPAEELEHILAPWCAYMILPIFAFANAGVYLL
                     EMGMEQLSSPLPLGIALGLIIGKTLGVFGFSYLAVLFRLASLPQGVNFKQIFAIAVLC
                     GIGFTMSMFLASLAFDVSEAGESITALARLGILLGSAVSAILGYTLLRMATKQNNPEN
                     NATY"
BASE COUNT         1262 a          980 c          876 g         1232 t
ORIGIN      
        1 aaaaatattt ctgaacgaaa tatttttcgg tctcaatact cgctacgctc gctcctgtgg
       61 agccgttggc aaagccaacg ttcaaatgta aacatttgtc ccacaagggg agaggtgcgc
      121 tttagatgag gcgtaccatc cctcgttcac atcaattaat caatattctt caactcttct
      181 tccgaaagct gctcttgttg gctttgctca acattgccat ctttcacttt aaattcaagg
      241 ttttggaaat aagcttcacg gaaggtaaca taagggtctt gagcttgctc taacaacgca
      301 tcttgttcta ataatttaga acgggtatct accccttgta ccacaaattt agcgatagac
      361 caaggtgacc caacataagt cagcaccgaa taaccggttt ccaccgcact accaatacct
      421 tgacgaggtg tggttgctcc ataagccggc atcataatat aggagccgga aggcacgccg
      481 tgagcgccta aactctcacc taaaccacgt tgtccgttat ttaaacgtaa cccctcatct
      541 aaactcgccc agtcaattaa cccacctaaa ccaaacacag tgttgatcca gaagcggttg
      601 aagtgaacca tcgctttttt accttctcct tcaattaagc ggtttacaaa gctcaccggc
      661 tcatcaaggt tattagcaac attaattaag cctgttttaa ccgggcttgg tacatactct
      721 ttccaacctt tagctaccgg ttttaacaca taagggtcta aatagtcgta attgactttc
      781 cacatcgcac ggttaaaccc ctcaagtggg tcgtctcgca cgccggtttc tgggttaatg
      841 cttgatgaac aagcggttaa aaatgccaca ctgagtagca taaacatcgg tttgaacgac
      901 ttgagtttca taaattgaac cttttgcaga gaaatttgtc cattgtagcg aagttgataa
      961 aaaatacaaa acaaaaagcc gttttgcctc tagaaatcta gacgtctaga ttgagatata
     1021 gttcgctttt gattacaata caggcaacat ttaaggagca aacaaatggc agactggaac
     1081 ggcgaatata ttagccctta tgccgaacac ggcaaaaaaa gtgaacaagt caaaaaagtg
     1141 acggtatcca ttccaattaa agtattggaa attttaacta atgagcgaac ccgtcgccaa
     1201 atcaaaaatc ttcgtcacgc aaccaacagc gaattattgt gcgaggcttt tttgcacgcc
     1261 tttaccggtc agcctttgcc gaatgatgaa gacttgatga aagacagggc agatgaaatc
     1321 cctgaagcgg caaaacaaaa aatgtgtgag ctgggaatag acccggacga atggcaatat
     1381 tagacacacc ttgcaactgc gaggttcttt ttatgtttta aggagacttt atgtatcaac
     1441 aattaacaac agaagcacgt tgggctgtgt tgcttacgct gatttatctg ctcggctggg
     1501 taggttttgc ttacttttca ccgcaaggca gaggcatttt cggctttccg atttggtttg
     1561 aactttcttg cattttctta cccgtactat ttagcttagt tgccaccatt gtcgtcaaaa
     1621 aagtgtataa aaatatcgat cttgaggtga ataatgaata gtgaaatgat tttacccctg
     1681 attgcttatt taatttttgt gtttggcgta gcgttttatg cttaccgtaa acgccaaggc
     1741 ggaagcttta tttcggaata ctatatcggt gggcgttcaa tgtcgggctt tgtgttagca
     1801 atgacaaccg ccgccactta tgtgggggca agttccttta tcggtgggcc gggtgctgcc
     1861 tataaatacg gtttaggctg ggtgttactg gcaatgattc aagtgcccgc agtgctactc
     1921 tctcttggag cattaggcaa aaaatttgcc ttacttgccc gcaagcataa tagtgtcacc
     1981 attaacgata tgttattagc ccgttaccaa aacaaatttg tggtttggat tgcaggacta
     2041 gccttattac tttcgttttt tgcgatgatg acggtgcaat ttatcggtgc cggtcgctta
     2101 cttgaaacca cactcggaat cccttaccaa acagcggtaa tgatttttgc catcacagtc
     2161 gggctttata cctttatcgg cggttttaga gcggtggtgc taaccgatac tattcaaggt
     2221 ttagtaatga tagtcggcac aagcatttta ctcgctggtg tgatttatgc cacaggcgga
     2281 gtggaaaatg caatgcacac ccttgaagcc attaacccac aacttaccac cccttacggc
     2341 attgacgaac gcccgcttga tttcaccttt atgacttcat tttgggtatt ggtttgcttt
     2401 ggtttaatcg gcttaccgca tattgcggtc agaagtatgg catgcaaaaa cagccaagcc
     2461 ttgcaccgag caatgattat cggcacggta gtcattgcaa ttctaatgtt tggaatgcac
     2521 ctttcaggcg tattaggcag agcggttgtg cctgatctca aagtgccgga tcaagtcatt
     2581 ccaacactaa tggtacaagt gctaccaccg gtggttgccg gtattttcct tgccgcccca
     2641 atggcagcga ttatgtcttc gattgactca atgttgattc agtcgtcttc aaccttaatt
     2701 aaagatctct atctggcaat taagccgaat gccattaata acgagaaaaa aatcaaattg
     2761 ttctccacta ttactactct tacttttacg gtattactcg tgtttgccgc cctaaccccg
     2821 cctgagatgt taatttggct gaacctactc tctttaggtg gtttagaagc gactttccta
     2881 tgggtaattg tactagggtt gtattgggaa aaggcaaatg ccaccggtgc tatttactca
     2941 atgctggcag gcttaagttg ttatgtatta atgactacct ttaagattgc tatttttagc
     3001 ttccacgcca ttgtgccttc actgctaatt ggtttgattg ctttcttaat cggcaaccga
     3061 tttgctccta aggtgtaaaa taaaataggc atagtggtat ggaagttcac tatgcctatt
     3121 ttgcaaaatt tccgctcaat tcaaccgctt gtagttaata agtggcatta ttttctggat
     3181 tattctgctt agtcgccatt ctaagtaacg tataacctaa aatcgctgaa accgcagagc
     3241 cgagtaaaat acctaatcga gctagagcgg taatactttc cccagcctca cttacatcaa
     3301 aggcaagact tgctaagaac atcgacattg taaaaccgat accgcatagc accgcaatgg
     3361 caaaaatttg cttaaaatta accccttgcg gcaggctggc aaggcggaat aatactgcta
     3421 aataactaaa accgaataca cctaaggttt tgccgataat taagccgagc gcaataccta
     3481 acggcaatgg tgatgagagt tgctccattc ccatttctaa taagtaaacg ccggcattag
     3541 cgaaggcgaa gatcggtaaa atcatataag cacaccaagg ggcaagaata tgttctagct
     3601 cctctgccgg tcgttcccca tgtttacctt tcagcggtac gcagaagccg atgatcacgc
     3661 cggcaagggt agcgtgaacc cctgatttta aaacggaagt ccatagcact aagcctacta
     3721 ccaaataagc acagagtgag gtcactttaa agcggttaag tagcactaag ccgataatcg
     3781 caatcgcggc aatagttaag gcttgcacac tgatttcttg cgaatagaaa atggcgatta
     3841 ccacaatcgc tcctagatca tcaataatcg ctaatgccaa caaaaatgcc tttaaagcca
     3901 atggcacacg agtgcctaat aacgccacaa tgcccaccgc aaaggcaata tcagttgcca
     3961 ttggaattgc ccaaccatta tgatattcag ggtggttttg attaatcgcc caataaataa
     4021 tcgctggaac aatcatacca cctactgctg ctatcgcagg aaaaatagct ttcttataac
     4081 ttgaaagcga accttcaaac aactcttttt ttacttccag ccccaccaac gtaaaaaaca
     4141 ctgccattaa gccatcgtta acccagagta atagcggttt attcaaggca aattcaccaa
     4201 actgtacact aacaatcgtt tgtaaaaact caaaatagaa atcacttaag gaggtgttgg
     4261 cgcacacaat tgctgcaaaa gcaaaaacca gaagcaatac gcctcctgag gcttcagatt
     4321 ttaaaaattc ttttaatttt tccacttaac
//
LOCUS       DANLZD010000168         4343 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.169, whole genome shotgun sequence.
ACCESSION   DANLZD010000168 DANLZD010000000
VERSION     DANLZD010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4343)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4343)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4343
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.169"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            32..2008
                     /gene="cpdB"
                     /locus_tag="PXE26_002321"
     CDS             32..2008
                     /gene="cpdB"
                     /locus_tag="PXE26_002321"
                     /EC_number="3.1.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2',3'-cyclic-nucleotide 2'-phosphodiesterase"
                     /protein_id="HDL5594861.1"
                     /translation="MLNRRKFIQLGATAMLVLGTQPSAFAQTAKNKAGLRVIATTDIH
                     GFLTDFDYYKDAPTEKFGFTRTASLIKQARAEVKNSVLVDNGDLIQGNPISDYQSTKG
                     AKEGKPEPSIMALNAMQYEVGTLGNHEFNYGLSYLDNAIKQAKFPIVNANIVKPGTDE
                     PFFTPYVIQQKEIVDEKGNKHTIKIGYIGFVPPQVMIWDKANLEGKVEARDIVKTAQK
                     YVPIVKKEGADIVVALAHTGPSDEPYKEGAENCAFYLADVKGIDAVIFGHSHRLFPNK
                     EFANSPNADIAKGTMKGVPESMAGYWGNNISVIDLSLAENDGKWGVVDGRAELRPIYN
                     TEEKKATVENHPEIVALLKETHEATRQFVSQPIGKATDNMYSYLALVQDDPTIQIVNQ
                     AQKAYVENVVKGLPELAGLPILSAGAPFKAGGRKNDPTGYTEVDKGELTFRNAADLYL
                     YPNTLVVVKATGAELKEWLECSAGMFKQIDVASDKPQYLLDWTGFRTYNYDVIDGVSY
                     QFDITQPARYDGECKLINPNSHRVVNLTFDGKPVDPKQEFLIATNNYRAYGAKFPGTG
                     DKHIVFAAPDENRQVLANYITTESKAHGQVSPKADNNWRIAPISSNAKLDIRFETSPT
                     DKAKAFIKENAQYPMEYIENDETGFAVYRIDLTK"
     gene            complement(2081..3559)
                     /locus_tag="PXE26_002322"
     CDS             complement(2081..3559)
                     /locus_tag="PXE26_002322"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HDL5594862.1"
                     /translation="MDSILGKKINSTAIPSLLCDFYKTSHRIQYPEGSQFLYSTFTPR
                     SNIYAPFVTRVVSFGFQAFILKYLIHYFNDNFFSRSQHDVVSEYTQFISDTLNIEDSG
                     EHIAQLHQLGYLPIRIKAIPEGKSVAVKVPLMTIENTHSSFFWLTNYLETLINVSLWQ
                     PITSASIAFAYRKALAEFSEQTCDDNSHLPFQAHDFSMRGMSSLESAESSGAGHLTSF
                     LGTDTIPAISFVTAYYGSQHLIGTSIPASEHSVMSSHGVDELPTFRYLMAKYPNNMLS
                     IVADTTDFWHNITVNLPLLKQEILARPESAKLVIRPDSGDFFTIICGNNSSPVEHERK
                     GLIECLWDIFGGSINQKGYKVLNPHIGAIYGDGVTYDKMIRILEGLTAKGFASSNIVF
                     GVGAQTYQRNTRDTLGFAIKATSITINGVEKAIFKAPKTDNGLKKSQKGRVKVISYDH
                     YVDELTALDDFSDDLLEVVFENGKLVKSTNFDEIRQNIAQQF"
     gene            3862..4023
                     /locus_tag="PXE26_002323"
     CDS             3862..4023
                     /locus_tag="PXE26_002323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HDL5594863.1"
                     /translation="MEKIENSSNLVLKLSLENQMLILESLEHPKEPNLVMLEALKKYS
                     LYVAKTSNK"
     gene            4041..4325
                     /locus_tag="PXE26_002324"
     CDS             4041..4325
                     /locus_tag="PXE26_002324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010128390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594864.1"
                     /translation="MANITLSHITPKHFFETVRLLKMQEHRIYIGVDSIEVRFKQKRF
                     ESKKETDKRLEQLEHFMLFLQEIINSDIPIDLDEFIYTYHRSVRRGFYRR"
BASE COUNT         1468 a          788 c          848 g         1239 t
ORIGIN      
        1 ttaccctttc atttcattaa ggagatattt tatgttaaat agaagaaaat ttatccagct
       61 tggtgcaact gcaatgcttg tattggggac acaaccgtct gcatttgcac aaacagccaa
      121 aaataaagct ggcttgcgtg tcatcgccac tacggatatt cacggtttct taactgattt
      181 tgattattac aaagatgctc caacagaaaa gtttggtttt acccgtacgg caagcctaat
      241 taaacaagct agagcagaag ttaaaaacag tgtgttagtc gataatggtg acttaattca
      301 aggtaatcct atttctgact accagtcaac caaaggtgca aaagagggca aacctgaacc
      361 ttcgattatg gcattaaatg cgatgcaata tgaagtcgga acgctgggaa atcatgaatt
      421 taactacggt ttaagctatt tagataatgc tattaagcaa gcaaaattcc ctattgtcaa
      481 tgcaaacatt gtgaagccgg ggacagatga accattcttt acaccttatg ttattcaaca
      541 aaaagaaatt gtagatgaaa aagggaataa gcataccatt aagattggtt atatcggttt
      601 tgtaccacca caagtgatga tttgggataa agctaatctt gaaggaaaag ttgaagctcg
      661 agatattgtg aagaccgcac aaaaatatgt gcctatagta aaaaaagaag gggcagatat
      721 tgtcgttgca ttggcacata ccggcccttc agacgaaccc tataaagaag gcgctgagaa
      781 ctgtgcgttt tatctagctg atgtaaaagg tattgatgca gttattttcg ggcattcaca
      841 tcgcctgttc ccaaataaag aatttgcaaa ttcaccaaat gccgatattg caaaaggaac
      901 aatgaaaggc gtaccggaaa gtatggctgg ctactgggga aataacatca gtgtgattga
      961 tttaagcttg gccgaaaacg atggtaaatg gggcgttgtg gacggtagag cagagttgcg
     1021 tccaatttat aatacggaag agaaaaaagc aaccgttgag aaccaccctg aaatcgttgc
     1081 attattaaaa gaaacccatg aagcaacccg tcaatttgtg tctcaaccta tcggtaaagc
     1141 aactgataat atgtatagtt accttgcgtt agttcaagat gaccctacca ttcaaattgt
     1201 gaaccaagct caaaaagcgt atgtagaaaa tgtggtaaaa ggcttgccgg agcttgcagg
     1261 attaccaatt ctaagtgccg gagcaccgtt taaagccggt ggacgtaaaa atgacccgac
     1321 aggctatacc gaagtcgata aaggcgaatt aactttccgc aatgcggcag acttatacct
     1381 ttacccaaat accttagtgg tggttaaagc aacaggagca gaattaaaag agtggttaga
     1441 gtgcagtgca ggaatgttca aacaaattga tgtcgcttcg gataaaccgc aatatttact
     1501 ggattggaca ggtttccgca cctataacta cgatgtaatt gacggtgtca gctatcaatt
     1561 tgatataacc caaccggctc gttatgacgg cgagtgcaaa ttgatcaacc ctaattcgca
     1621 ccgtgtggtg aacttaacct ttgacggcaa accggttgat cctaaacaag aattcttaat
     1681 tgccaccaac aattaccgtg cttatggagc aaaattcccg ggaacaggcg ataaacatat
     1741 tgtgttcgcc gcaccggacg aaaaccgcca agtgttagcg aattatatta ccaccgaaag
     1801 taaagctcac gggcaggtaa gtccgaaagc ggataacaac tggcgtattg caccaattag
     1861 ctcaaatgca aaattggata ttcgttttga aacctctcca acagataaag ctaaagcttt
     1921 cattaaggaa aatgcacaat atccgatgga gtatatcgaa aacgatgaaa ccggcttcgc
     1981 agtttaccgt attgatttaa ccaaataatc agagctaaat acaagcggtc taatttgcaa
     2041 aaaaattaac aaatttgacc gcttgtttca ttccattttt ctaaaattgt tgtgctatat
     2101 tttgccgaat ttcatcaaaa ttggtcgatt tgaccaactt accattttca aaaaccacct
     2161 ctaaaagatc atctgaaaaa tcatccagtg cggttagctc gtcaacataa tgatcataag
     2221 agattacttt tactcgccct ttttgcgatt tttttaagcc gttatcggtt ttaggagctt
     2281 tgaaaattgc cttttcgaca ccgttaattg taattgaagt cgctttgatt gcaaaaccca
     2341 gcgtatcacg agtattgcgt tgataagttt gagccccaac gccaaacaca atattgctgg
     2401 aagcaaaacc ttttgccgtt aagccctcta aaatccgtat cattttatca taagtgacgc
     2461 cgtcaccata aattgcccca atatgcggat taagcacttt ataacctttt tggttaatac
     2521 taccaccaaa aatatcccac aaacactcaa tcagaccttt gcgttcgtgt tcaacggggg
     2581 aggaattgtt accgcaaata attgtaaaaa aatcaccgct atcagggcgg ataaccaatt
     2641 ttgctgattc cggtcgagct aaaatttctt gttttaataa tggcaaatta acggtgatgt
     2701 tatgccagaa atcggttgta tctgccacaa tagatagcat attatttgga tattttgcca
     2761 ttaaataacg gaaagtcggc agctcatcaa caccgtgtga actcatcacc gaatgttctg
     2821 atgccggaat agatgtaccg attaaatgtt gagaaccata ataggctgtc acgaatgaaa
     2881 ttgcaggaat ggtatctgtg cctaaaaatg aggttagatg tccggcaccg gagctttctg
     2941 ctgattctaa ggaactcatt ccacgcatag agaaatcgtg tgcctggaag ggtagatggc
     3001 tattatcatc acaggtttgc tctgaaaatt cggctagagc cttacgataa gcaaatgcaa
     3061 tggaagctga tgtaataggc tgccataatg acacattaat cagggtttcc aaataattag
     3121 tcagccaaaa aaagcttgag tgagtgtttt caattgtcat taaaggaact ttcactgcaa
     3181 cagattttcc ttctggaata gctttaattc tgataggtaa gtaaccgagc tgatgcaatt
     3241 gtgcaatatg ttcgccagag tcctcaatat tcaatgtgtc agaaataaat tgagtatatt
     3301 cagaaacaac gtcatgttgt gagcgagaaa aaaaattatc gttaaaataa tgaatcaagt
     3361 attttaaaat aaatgcctga aagccaaatg atacaacacg tgtaacaaat ggagcataaa
     3421 tattactacg aggtgtgaat gtactatata aaaactgaga accttcagga tattgaattc
     3481 gatgtgaagt tttataaaaa tcacataata gtgatggtat tgcagttgaa ttaatttttt
     3541 tacccaaaat actatccatt ttcttaaagt ccttatttaa cttttaaggc taaaggttat
     3601 cataacttac cataaaatga aaagtatttg ttacaaaatg agtgtattta cataataact
     3661 tatagattaa tgctgttaca tagatgtgat ggcgtattca ataataccgc cgattgatga
     3721 aaaacttata ttattaattt tcgcataatg tcctacaggt tatgttacaa ttcgagtgca
     3781 gtacaatcgg gcttgtccca ctgcacgaga atttacacat aacctgttgt tatgcgaaag
     3841 tcatctaatg agataattaa aatggaaaaa atagagaata gttcaaatct tgttctaaag
     3901 ctttctcttg aaaatcaaat gctaattctt gagagcttag aacatcctaa agagcctaat
     3961 ttagtaatgc tagaggcttt aaaaaagtat tctttgtatg ttgctaaaac aagtaataaa
     4021 tagcgttttc aagctaaact atggcaaata taaccctttc tcacatcacc cctaaacatt
     4081 tttttgaaac tgtccgacta ctcaaaatgc aggaacatcg aatttacatc ggtgtagatt
     4141 cgatagaagt tcgttttaag caaaagcgtt ttgagtcaaa aaaggaaaca gataagagac
     4201 tagaacagtt agagcatttt atgctctttc tacaagaaat cattaattca gatattccta
     4261 tagatttaga tgagtttata tacacctatc acaggtcagt aaggagaggt ttttatcgac
     4321 gttagtgatg tgaaagagga gtg
//
LOCUS       DANLZD010000169         4307 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.170, whole genome shotgun sequence.
ACCESSION   DANLZD010000169 DANLZD010000000
VERSION     DANLZD010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4307)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4307)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4307
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.170"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            63..1481
                     /gene="leuC"
                     /locus_tag="PXE26_002325"
     CDS             63..1481
                     /gene="leuC"
                     /locus_tag="PXE26_002325"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HDL5594865.1"
                     /translation="MQQAKTLYQKLFDSHVVYEAEGETPIIYINRHLIHEVTSPQAFD
                     GLRVAGRQVRQVSKTFGTMDHSISTQVRDVQQLEGQAKIQVLELEKNCEETGIPLFDI
                     TKKQQGIVHVMGPEQGLTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTL
                     KQARAKSMKVEVRGKVNPGITAKDIVLAIIGKTTMAGGTGYVVEFCGEAIRDLSMEGR
                     MTVCNMAIEFGAKAGIVAPDETTFAYLKDRPNAPKGQDWEDAIEYWKTLKADEGAVYD
                     AEVILEAKDIAPQVTWGTNPGQVIGIDDVIPNPEDMADPVTRASAEKALAYIGLEAHT
                     DMKDVPVDQVFIGSCTNARIEDLRAAAAVMKGRKKADNVKRILVVPGSGLVKEQAEKE
                     GLDKIFIEAGAEWRNPGCSMCLGMNDDRLGEWERCASTSNRNFEGRQGRNGRTHLVSP
                     AMAAAAAVFGKFMDIRKVSLNA"
     gene            1494..2096
                     /gene="leuD"
                     /locus_tag="PXE26_002326"
     CDS             1494..2096
                     /gene="leuD"
                     /locus_tag="PXE26_002326"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HDL5594866.1"
                     /translation="MAGIKQHSGLVVPLDAANVDTDAIIPKQFLQAITRVGFGKHLFH
                     EWRYLDAEETQINPDFVLNFPQYQGATILLARKNLGCGSSREHAPWALADYGFKVMIA
                     PSFADIFYNNSLNNHMLPIKLTEEEVEEIFQWVWANEGKQIHVDLEAMTVTVGEKVYT
                     FELDEFRRHCLLNGLDNIGLTLQHEAAIAAYEKNIPAFLR"
     gene            complement(2168..2632)
                     /locus_tag="PXE26_002327"
     CDS             complement(2168..2632)
                     /locus_tag="PXE26_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594867.1"
                     /translation="MNKFKIALMATVAIGLFACTPSPQSNSTKQQAQVGYLKQNISQA
                     ELNNPKDFKRYSYYCKNFATGSSSYLATYFPLWSESRKQENFGIYFQLDGGKVYPFDH
                     LANISLNARATKFEVRYRSYQPIEGSFVELVAREFTSTYYKNNVPWLECREG"
     gene            complement(2656..3162)
                     /locus_tag="PXE26_002328"
     CDS             complement(2656..3162)
                     /locus_tag="PXE26_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594868.1"
                     /translation="MADPHIQSPMDFWDYLTVIIYRSGFVLATLMLLLLPYYPQTAQY
                     GLLVSGTMLASSLHLYAKSFRLIFQFSVWIGLLGAVFNFPLLAFGAMLLVIGGLSYKE
                     YFCFRVFGLNFQPLLVAVLWIAFALEWSLLVQILSLVCGLLLLVLSIQKWRMPLHFDI
                     GDKSKYQI"
     gene            complement(3185..4162)
                     /gene="dusA"
                     /locus_tag="PXE26_002329"
     CDS             complement(3185..4162)
                     /gene="dusA"
                     /locus_tag="PXE26_002329"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HDL5594869.1"
                     /translation="MTNEIQPFYRGRFSVAPMLDWTTRHCRYFHRQFSRQALLYTEMI
                     TAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQLAHCAKLVAERGYAEINLNVGCPSD
                     RVQNGMFGACLMAKADLVADCIKAMQDAVEIPVTVKHRIGIDDLDSYEFLCDFIEKVQ
                     PYSNDFIVHARKAWLTGLSPKENREIPPLDYDRVYQLKRDFPHLKISINGGIKTIEEI
                     KQHLQFVDGVMVGREAYQNPSMLGEIDSQIFNENRPLVTAKEAVEKMFPYIERELAKG
                     VYLNHIVRHMLGAFQHCKGARQWRRHLSENATKSGAGVEVVEQALAFIG"
BASE COUNT         1335 a          950 c          896 g         1126 t
ORIGIN      
        1 caaaattttt tgcaaattta accgcttgta ttaaaagtta cccttttgag ttggaacatt
       61 ttatgcaaca agccaaaacc ctatatcaaa aactattcga ctcacacgtt gtgtatgaag
      121 ccgaaggcga aacgccgatt atttatatta accgccactt aattcacgaa gttaccagcc
      181 cgcaagcgtt tgacggcttg cgtgttgccg gtcgccaagt tcgccaagtc agtaaaacct
      241 tcggcacaat ggaccacagt atttcaaccc aagtgcgtga tgtacagcaa cttgaagggc
      301 aagcgaaaat tcaagtatta gaattagaaa aaaactgcga agaaaccggt atcccactgt
      361 ttgacatcac taaaaaacaa caaggtatcg ttcacgtaat ggggccggag caaggcttaa
      421 ctttacccgg tatgaccatt gtatgtggtg actcgcacac cgccactcac ggggcctttg
      481 gtgcgttagc cttcggtatc ggtacttccg aagtggaaca cgttttagcc acccaaacct
      541 taaaacaggc ccgtgcaaaa agtatgaaag tggaagtccg tggcaaagta aacccgggca
      601 ttaccgcaaa agatattgtg cttgcgatca tcggtaaaac aactatggct ggcggtacag
      661 gctatgtagt ggaattttgt ggcgaagcaa ttcgtgatct ttcaatggaa gggcgaatga
      721 cagtgtgtaa tatggcgatt gagtttggtg cgaaagccgg tattgttgcc ccggatgaaa
      781 ccacgttcgc ttacttgaaa gaccgcccaa atgcaccaaa aggtcaagat tgggaagatg
      841 ccattgaata ttggaaaacc ctcaaagccg atgagggtgc agtttacgat gcggaagtga
      901 tcttagaagc aaaagacatt gctccacaag tgacttgggg aaccaacccg gggcaggtga
      961 tcggtattga tgatgtaatt ccaaatccgg aagatatggc cgatcctgtt actcgtgcct
     1021 ctgcggaaaa agccttagct tacatcggct tagaagccca tacagatatg aaagatgtac
     1081 cggttgatca agtctttatt ggttcttgta ctaatgctcg tattgaagat ttgcgtgctg
     1141 cggcagcagt aatgaaaggg cgtaaaaaag ccgacaatgt aaaacgtatt ctcgttgtgc
     1201 caggttcagg tttggtaaaa gagcaagcag aaaaagaggg cttggataaa atcttcattg
     1261 aagccggtgc agaatggcgt aacccgggtt gctcaatgtg tttgggaatg aacgatgacc
     1321 gcttgggcga atgggaacgt tgtgcctcta cgtctaaccg taactttgag ggcagacaag
     1381 gacgtaacgg tcgtacccac ttagtcagcc cggcaatggc ggctgcggcg gcggtgttcg
     1441 gtaaatttat ggatattcgc aaagtgtcat taaacgcata ataggaggaa aaaatggcag
     1501 gtattaaaca acattcaggc ttggtcgttc ctcttgatgc agcgaacgta gacaccgatg
     1561 caatcattcc aaaacaattt ttgcaagcca ttactcgagt cggctttggt aagcaccttt
     1621 tccacgaatg gcgttattta gatgcggaag agactcaaat caaccccgat ttcgtactga
     1681 acttcccaca atatcaaggt gcaaccattt tactcgcccg taaaaattta ggctgtggct
     1741 cttctcgtga gcacgcccct tgggcattgg cagattacgg ttttaaagta atgatcgccc
     1801 caagttttgc ggatattttc tacaataaca gcttaaataa ccatatgttg ccgattaaat
     1861 taaccgaaga ggaagtcgaa gagatcttcc aatgggtgtg ggcaaatgaa ggaaaacaga
     1921 tccacgttga tttagaagcg atgactgtga ctgttggcga gaaagtttat acctttgagt
     1981 tagacgaatt ccgccgccac tgcttattaa acggtttgga taatatcggc ttaaccctac
     2041 aacacgaagc tgcgattgct gcttatgaga aaaacattcc ggcattttta cgctaattaa
     2101 aatacaaaaa aacggctaac atctttaagg cgttagtcgt tttcttttta gccattttct
     2161 ttggcaatta gccttctcgg cactctaacc aaggcacatt atttttgtaa taagttgaag
     2221 taaactctcg tgccactaac tctacaaaac tgccttcaat cggctgataa gaacgataac
     2281 gcacttcaaa ttttgttgct cttgcattca aactgatgtt ggcaagatgg tcgaacggat
     2341 aaacctttcc gccatcaagt tgaaaataga taccaaaatt ctcttgctta cggctttcag
     2401 accaaagtgg aaaataggtt gccaaatatg aactgctgcc tgttgcaaaa ttcttacaat
     2461 aatagctata acgcttaaaa tctttcggat tattcaattc cgcttggctg atattctgtt
     2521 tcaaatatcc aacctgtgct tgttgcttag ttgagtttga ttgtggtgag ggcgtacaag
     2581 caaataagcc aattgccact gttgccatta aagcaatttt gaatttattc ataaaaatcc
     2641 cgataaaata ttaaattaaa tctgatattt gcttttatcg ccaatatcaa aatgcagcgg
     2701 cattcgccat ttttgaatac tcagcacaag aagcaacaag ccacagacaa ggcttaaaat
     2761 ttgcaccaat aaagaccatt ctagtgcaaa agcaatccac aataccgcca ctaaaagcgg
     2821 ttggaaattt aagccgaata ctctaaaaca gaaatattct ttatagctta atccgccgat
     2881 caccagtagc attgccccga acgcaagcaa agggaaatta aacacagcac caagtaagcc
     2941 aatccaaaca gaaaattgga aaatcaggcg aaacgatttg gcataaagat gcaaagaaga
     3001 tgccaacatt gtgccagata ctaataaacc atattgtgcc gtttgcggat aataaggcaa
     3061 taaaagcaac atcaatgtag ctaacacaaa accgctgcgg taaatgatga cggttaaata
     3121 atcccaaaaa tccattggcg attgaatatg tggatctgcc ataactgcct ccttaaacaa
     3181 taaattagcc aataaacgca agggcttgtt ccactacttc tacaccggct cccgacttag
     3241 tggcattttc acttaaatga cgacgccact gcctcgctcc tttgcaatgt tgaaacgcac
     3301 caagcatatg gcgaacgata tgatttaaat agacaccttt ggcaagctca cgttcaatat
     3361 aagggaacat cttttccacc gcttcttttg ccgttacaag cggtcgattt tcattaaaaa
     3421 tttgcgaatc gatctcgcct agcattgacg ggttttgata ggcctcacgc cctaccatta
     3481 ccccatcaac aaactgcaaa tgctgtttaa tttcctcaat ggttttaatg ccgccattga
     3541 tgctaatctt taaatgcgga aaatctcgct tgagctgata aacccgatca taatctaaag
     3601 gcggaatttc acggttttcc ttcgggctta accctgtcag ccacgccttg cgggcgtgta
     3661 cgataaaatc attgctataa ggttgcactt tttcgataaa atcacacaaa aattcatagc
     3721 tgtctaaatc atcaatccca atacgatgtt taaccgtgac cggaatttcc accgcatctt
     3781 gcattgcttt aatacaatcc gccactaaat ctgcttttgc catcaaacaa gccccaaaca
     3841 taccgttttg cactcggtct gacgggcaac cgacatttag attaatctcg gcatagcctc
     3901 gctctgccac caatttggca caatgagcca actgtgccgg gtcgcttcca cccagttgca
     3961 aagccaccgg attctcgctc ggatcatatt ccaacaaatc atatttggcg tgaataatcg
     4021 ccggggcggt gatcatttcg gtataaagca aggcttgacg actaaattgg cgatgaaaat
     4081 agcggcagtg acgggttgtc caatctaaca ttggagcaac cgaaaaacgt ccacggtaaa
     4141 aaggttgaat ttcgttagtc ataaaaatat caaaataaag cggtaaaaaa tcagtaaaaa
     4201 ataaccgctt gtaagcgatt caaaacaagc agccatcata ctcgaaaaag ccagataaac
     4261 atagtttcct caaggcttcc ccatctatct gcgcactttt aaaacaa
//
LOCUS       DANLZD010000170         4226 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.171, whole genome shotgun sequence.
ACCESSION   DANLZD010000170 DANLZD010000000
VERSION     DANLZD010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4226
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.171"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            48..1256
                     /locus_tag="PXE26_002330"
     CDS             48..1256
                     /locus_tag="PXE26_002330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HDL5594870.1"
                     /translation="MSKNLILILNCGSSSLKFAILDPKTGDEKLSGLAEAFHLEDARI
                     KWKLNGEKGNADLGAGAAHSEALTFIAEKLLSDELKAGIGAIGHRIVHGGEKFTSSVV
                     ITDEVIKGIEDATQFAPLHNPAHLIGIKEAFRIFPELKDKNVAVFDTAFHQTMPEHAF
                     LYALPYTFYKENGIRRYGFHGTSHFYITSQVAELAGKSVEQTNAIICHLGNGGSVSVV
                     RNGKCIDTSMGLTPLEGLVMGTRSGDLDPAIISFLYNNLGMSMDEIDTTLVKKSGLLG
                     LTGVTSDCRYAEDNYNDVSKPEAKRALDVYSYRLAKYIGSYMAILGDDHLDAIAFTGG
                     IGENSGLVRELTLNHLKLFGIKLDQERNLAARFGKDGVITADESTFKAVVIPTNEELV
                     IAQDTAKLAL"
     gene            1309..3444
                     /gene="pta"
                     /locus_tag="PXE26_002331"
     CDS             1309..3444
                     /gene="pta"
                     /locus_tag="PXE26_002331"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005542370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HDL5594871.1"
                     /translation="MSRTIILIPISTGVGLTSVSLGLVHALEQKGSKVGFLKPISQPI
                     SGEDTLDRSTTIIRAEQTTEVGEPFMLSEAETLIGQNQTDVLLEKVVERHQKLSKNNE
                     IVIVEGLIPTRKNSYANSINYEMAQALDAEIVLVAAPASDTPAQLKERVEAAASQFGG
                     RNNPNLLGVIINKFNAPVDDSGRTRPDLTEIFDSFQHSNNNVSEVEHLFAKSPIKLLG
                     CISWKAELIATRAIDVAKHLGASIINEGEIKARRIRGVTFCARNLPNMVDHFKAGSLL
                     VTSADRPEVLVAASLAVMNGIEIGAILLTGGYKIDSSIAKLCQQAFETGVPVFRIEGN
                     TWQTALSLQSFSLEVPVDDKERIAAIKEYMASKFNVGFIDEVSKAATRARRLSPAAFR
                     YQLTEYARQAKKRIVLPEGDEPRTVKAAALCAERGIAECVLLANPTDVQRVAEAQGVV
                     LGKGVTIIDPASIRENYVDRLVELRKAKGMTEVVAREQLLDTVVLGTMMLEANEVDGL
                     VSGAVHTTANTIRPPMQIIKTAPGSSIVSSIFFMLLPDQVLVYGDCAVNPDPTAEQLA
                     EIAIQSAESAKAFGIDPRVAMISYSTGTSGSGADVEKVKEATRIAQEKRPDLIIDGPL
                     QYDAAIMEDVARSKAPNSPVAGKATVFVFPDLNTGNTTYKAVQRSADLVSIGPMLQGM
                     RKPVNDLSRGALVDDIVYTIALTAIQATQ"
     gene            3558..>4226
                     /gene="can"
                     /locus_tag="PXE26_002332"
     CDS             3558..>4226
                     /gene="can"
                     /locus_tag="PXE26_002332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HDL5594872.1"
                     /translation="MEKIERLFANNHAWATKMKDEQSDYFKELAEHQKPTYLWIGCSD
                     SRVPAEKLTGLGPGELFVHRNVANMVIHTDLNCLSVVQYAVDVLEIEHIIICGHTNCG
                     GINAAIAQKELGLINNWLLHIRDIWFKHSHLLGKLPYEERSNVLTRLNVAEQVYNLGQ
                     SSIIKTAWEQGKSLSLHGWVYDVTDGFLIDQGVMATSRETLEITYRNAIAKITTEANE
                     KIVLN"
BASE COUNT         1320 a          787 c          863 g         1256 t
ORIGIN      
        1 aatagtattt tcttcaaact catttcataa aataaggtaa tttgaccatg tctaaaaact
       61 taatcttaat ccttaactgc ggtagttcat ctcttaaatt tgctatttta gatcctaaaa
      121 caggtgatga aaaattatct ggacttgctg aagcttttca tttagaagat gcacgtatca
      181 agtggaagtt aaacggggag aaaggtaatg ctgatttagg tgcaggtgcc gcacatagtg
      241 aagcacttac ctttattgct gaaaaattgt tatctgacga attaaaagca ggtatcggcg
      301 cgattggtca tcgtattgtt catggcggtg aaaaattcac ctcatcagtt gtaattaccg
      361 atgaagtgat taaaggtatt gaagatgcaa cgcaatttgc accattacac aaccctgcgc
      421 atttaattgg tattaaagaa gcattccgca ttttccctga attaaaagac aaaaacgtag
      481 ctgtatttga cactgcattc catcagacaa tgccggaaca cgcattctta tatgcacttc
      541 catatacatt ctataaagaa aatggtattc gtcgctacgg tttccatggc acaagccact
      601 tctatatcac ctcacaagtt gcagaattag caggtaagtc tgttgagcaa accaatgcca
      661 ttatttgcca cttaggtaac ggtggttctg tttctgttgt acgcaatggt aaatgtattg
      721 atacctcaat gggtttaact ccattagaag gtttagtaat gggtactcgc tctggtgact
      781 tagaccctgc gattatctct ttcttataca ataacttagg tatgtcaatg gacgaaattg
      841 atactactct agtaaaaaaa tctggtcttt taggtttaac tggcgtaact agtgactgtc
      901 gttatgcgga agataattac aatgacgtat caaaaccgga agcaaaacgt gctttagatg
      961 tatatagcta tcgtttagct aaatatattg gttcatatat ggcaatttta ggcgatgacc
     1021 acttagatgc tatcgcattt acaggtggta tcggtgaaaa ttcaggctta gtacgtgaat
     1081 taaccttaaa tcacttaaaa ttatttggca ttaagttaga tcaagagcgt aaccttgctg
     1141 cccgttttgg taaagatgga gtcattacag cggacgagtc aacatttaaa gctgttgtta
     1201 tcccaactaa tgaagaactc gtgattgcac aagataccgc taaattagca ttataatcat
     1261 agggggcaga tattctgccc tttcactttc ttttaatttg gaaatattat gtctagaacg
     1321 atcattctta tccctatttc aactggtgtt ggtttaacca gtgttagctt aggtttagta
     1381 catgctttgg agcaaaaagg ttctaaagta ggatttttaa aaccgatttc tcaacctatc
     1441 agcggtgaag atacgttaga ccgctcaaca acgattatca gagcagaaca aacaacagag
     1501 gttggtgagc cgtttatgtt aagcgaagct gaaacattaa tcggtcaaaa ccaaacggat
     1561 gtattgttag aaaaagtggt ggaacgccac caaaaattat caaaaaataa tgaaattgtc
     1621 attgttgaag gtttaattcc aacgcgtaaa aactcatacg ctaacagcat taactatgaa
     1681 atggctcaag cccttgatgc tgaaattgta ttagttgcag caccggcctc agatacacca
     1741 gctcaattaa aagagcgagt tgaagctgcc gcttcacaat ttggtggacg taacaaccca
     1801 aatttactgg gcgttattat caataaattc aatgcaccag tagatgattc aggtagaacc
     1861 cgtccagatt tgactgaaat ttttgattca tttcaacact caaataataa tgtttcagaa
     1921 gtcgagcatc tttttgctaa aagtccaatt aagctgttag gctgtattag ctggaaagca
     1981 gaacttattg ctacacgagc aattgatgtt gcaaaacatt taggcgcttc aattattaat
     2041 gaaggcgaaa taaaggctcg tcggattcgc ggtgtgacat tctgtgcacg taacttacca
     2101 aatatggtcg atcattttaa agccggtagt ttattagtta cctctgcgga tcgtcctgaa
     2161 gtgttagttg ctgcatcgtt ggcggtaatg aatggcatcg aaattggtgc tattttacta
     2221 accggtggtt ataaaattga tagctcaatt gcaaaacttt gccaacaagc atttgaaacc
     2281 ggtgtgcctg tattccgtat tgaaggtaac acttggcaaa ccgcattaag cctacaaagc
     2341 ttcagcttag aagtgcctgt agatgataaa gagcgtattg ctgcaattaa agaatatatg
     2401 gcaagcaaat ttaatgtagg tttcattgat gaggtttcta aagccgctac tcgtgcaaga
     2461 cgtttatcac ctgcagcatt ccgttaccaa ttaaccgaat atgcccgtca agcgaaaaaa
     2521 cgcattgttt tacctgaagg agatgagcct cgtactgtga aagcggctgc attatgtgct
     2581 gagcgtggca ttgcagaatg tgtgttatta gctaacccaa cagacgtaca acgtgttgct
     2641 gaagcacaag gcgtggtatt aggtaaaggc gtaacgatta ttgaccctgc gagcattcgt
     2701 gaaaattatg ttgatcgctt agttgaattg cgtaaagcaa aaggaatgac tgaagttgtt
     2761 gctcgtgagc aacttttaga tacagttgta ttgggtacaa tgatgcttga agctaatgaa
     2821 gtggacggtt tagtctcagg cgcagttcac acaaccgcta acactattcg cccaccaatg
     2881 cagatcatta aaactgcacc gggaagctct attgtatctt ctatcttctt tatgctacta
     2941 cctgatcaag tattggtata tggtgactgt gcggtaaacc ctgacccaac tgcagaacag
     3001 ctagcggaaa ttgcgattca atcagcagaa tctgccaaag cctttggtat tgaccctcgt
     3061 gttgcaatga tctcctactc taccggtaca tcaggttcag gtgcggatgt agaaaaagtg
     3121 aaagaagcaa ctcgtattgc ccaagaaaaa cgtccagatt taatcattga tggcccatta
     3181 caatatgatg cggcgattat ggaagatgtt gcccgctcaa aagcaccaaa ttcacctgta
     3241 gcaggtaaag caactgtatt tgtcttcccg gatttaaata ctggtaatac cacctataaa
     3301 gcggtacaac gttcggcaga tttagtctct atcggcccaa tgttacaagg tatgcgtaaa
     3361 cctgtaaatg acttgtcccg tggggcttta gttgacgaca tcgtttatac tattgcgtta
     3421 actgcgattc aagcaacgca ataattccct cccaaatgaa accaaatgcc cttaaaacta
     3481 agggcatttt tattttttac ctacccgact tttcaattta atcatataat caagattagt
     3541 gttaaaaagg agaatttatg gaaaaaattg aacgcttatt tgccaataac cacgcctggg
     3601 caactaagat gaaagatgaa caatcggatt attttaaaga attagcggaa catcaaaagc
     3661 caacctattt atggattggc tgttccgata gtcgtgtgcc tgctgaaaaa ctcacagggt
     3721 taggccccgg agaattattt gttcatcgaa atgtagcaaa tatggtgatt cacactgatc
     3781 ttaattgtct gtcggttgtt caatatgcgg tagatgtatt agaaattgag catattatta
     3841 tctgtggtca cactaattgt ggtggtatca atgcggcaat tgcacaaaaa gaacttggtt
     3901 taattaataa ctggttgtta catattcgtg atatctggtt taaacacagc catttactag
     3961 gcaaacttcc ctatgaagag cgatcaaatg tcttgacccg attaaatgtt gcagaacaag
     4021 tttataattt aggtcagtcc tctattatta aaaccgcttg ggaacagggt aaatccctct
     4081 cgctacacgg ttgggtatac gatgttacag atggtttctt gattgaccaa ggtgttatgg
     4141 ctactagccg agaaacatta gaaattacct atcgtaatgc aatagctaaa ataacaaccg
     4201 aagcaaacga aaaaatagtt ttaaac
//
LOCUS       DANLZD010000171         4173 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.172, whole genome shotgun sequence.
ACCESSION   DANLZD010000171 DANLZD010000000
VERSION     DANLZD010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4173)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4173)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4173
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.172"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..1084)
                     /locus_tag="PXE26_002333"
     CDS             complement(<1..1084)
                     /locus_tag="PXE26_002333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5594873.1"
                     /translation="MGIMSKSISIFNHKGGIAKTTTAFNVGWSLANQGYQVLLVDLDS
                     QCNLTGLVLGYDQCKEDSDLALFYNNRHHLTMEGIVEALINGQSPDNYLSGNVGQITQ
                     TLNPNLFLLPGHLNVSELDSQISVSLKIAAGVPATRNIPGNLPTLIKKVAEQNNIDYI
                     LYDLSPNVGGLNEVILMSSDYFIVPTSPDFFCWQAVGSLAKNIRKWHNELKAFKELNG
                     FNQSSYAIKNKPQFLGTIQQRYRPRKGQPAKSFEKWIERIRNEVITNFVPVLKTIDCA
                     IDDTAIYAALKSTNSDLEPFDLAHIADFNSLIAISQELRVPVFSLTKEQIKNSGQFGH
                     ALNTMDESKENFDQEFQSLAERIIQLT"
     gene            complement(1149..1580)
                     /locus_tag="PXE26_002334"
     CDS             complement(1149..1580)
                     /locus_tag="PXE26_002334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594874.1"
                     /translation="MKKMAIVALSAFFSMNAFANNNVVYSCTTTDNQTLKVTKEGGNY
                     VYSHGNTTFKNPVKEALKNPASEIAGGSQFTTISLELRNAGKSYIVGHIEADPKSPFE
                     ASVQIQDIKTGNDITSFECRSDKPIRHNFDRKLMRKSGFAA"
     gene            complement(1584..3686)
                     /locus_tag="PXE26_002335"
     CDS             complement(1584..3686)
                     /locus_tag="PXE26_002335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL5594875.1"
                     /translation="MKKAKSLKFLTACIMLTTMSGYANSNTVNVGNSISNFIENTTGY
                     RTGNLGVSGNNALTEYYPVLSDYMHYSIGGGSAISAPASRGRPNQYGIGIGWKSNLTC
                     GNFDIKLSIKNQLNGITEGFKDLYGNIIESATGAVASLPAMIIQRANPQLYDILSNGL
                     YQGKLDFNNFKTSCEAMSNQLADLAMDSKLAKMAGLHRAAEIAETEPDAMAAKKKMDK
                     KDAEKGIPWVGGEQRGGKNQKPMAIVADIVGAGYNLALGRGPLEKGDIPIASCDGMLC
                     TEWKNPSEAAAYASEVIGETFLDACETCEQSSSGAKAGKGIAHFIEQTTIEKATKLEA
                     ALNHLDSLTPEQLNSLSTSTVSVTKGVLEAIAASPDAALLGARLSQELAISKEMEKLL
                     LIRRAMLAGMREPNVIKSSLVEEAERNLKLLDREIEQVKLEMELQRSINGNTALAAIT
                     QQMNEQALAIDDNAMGDGNRRFANLSNQAGANNLNTSGIANSAQNAVGDRYIAIPKSD
                     GSGMSDFYGAYKASPTNIVSNVNVGSYTQIAQMNGNANEQATALIKQFEGYLSHGKWD
                     VNANRAGYGSDTYTTADGMVHRVQKGTYVSREDAERDLARRMPQFMNVARGNVGADVW
                     AKLTPQAQAALTSVSYNYGSLSKLESVQKAAAVSAQSGDMTALANSIRNLQGHNNGVN
                     ARRRNQEADYIINAPKGN"
     gene            complement(3713..3991)
                     /locus_tag="PXE26_002336"
     CDS             complement(3713..3991)
                     /locus_tag="PXE26_002336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HDL5594876.1"
                     /translation="MQAKTFYYLPLLLLSAMASASPANKPSDVTVKVFTSESYPKVFP
                     HSGDWATHSDSFSNTENYSWALWRPYSCCKKQGQVFLGHVDWKSTHTH"
BASE COUNT         1158 a          824 c          798 g         1393 t
ORIGIN      
        1 tagtcagttg tataattcgt tctgctaatg attgaaattc ttggtcaaaa ttttctttac
       61 tttcatccat tgtattcaaa gcatgtccaa attgacctga gtttttaatt tgctcttttg
      121 ttaaggaaaa tacgggaact cgtagctctt ggctaatagc aatcaacgaa ttaaagtcgg
      181 ctatgtgagc caaatcaaat ggctctaagt cagaattcgt tgatttaaga gcagcataaa
      241 tagctgtatc atcaatagca caatcaatag tttttaatac cggcacaaaa ttcgtaatga
      301 cttcatttct aattcgctca atccattttt caaatgattt ggccggttgc ccttttcttg
      361 gtcgataacg ttgctgaata gtacctaaaa attgtggctt atttttaatt gcataagatg
      421 attggttaaa accattaagt tctttaaatg cttttaactc attatgccat ttgcgaatat
      481 ttttagcgag cgaaccaact gcttgccagc agaaaaaatc aggtgatgta ggtacaataa
      541 agtaatcact agacattagg ataacttcat ttaatccacc cacatttgga ctaagatcat
      601 agagtatgta atcaatattg ttttgttcag ctactttctt aattaaagtc ggaagattgc
      661 cgggtatatt tcttgttgct ggaacaccgg cagcaatttt taatgataca ctaatttgcg
      721 aatcaagctc ggaaacatta aggtgaccag gtaacaagaa cagatttgga ttcagggttt
      781 gagtgatttg gccaacattt ccactaaggt agttatcagg gctttgtccg tttatcagtg
      841 cttcaacaat accttccata gtcaaatgat gtctattatt gtaaaaaagc gctaaatcac
      901 tatcttcttt gcattgatcg tagccaagta ccagaccggt taggttacat tgtgaatcca
      961 aatcgactaa caatacttga tagccttgat ttgctaaact ccaaccaaca ttaaatgcag
     1021 ttgtagtttt agcaatacct cctttatgat taaaaatact gatagactta ctcataatac
     1081 ccataattct atgaaataat taacccaccg aactcatttg agaatggtgg gttaatgctt
     1141 tgctttagct aggctgcaaa tccagatttt ctcatcagtt tgcgatcaaa gttgtggcga
     1201 ataggcttat cggaacgaca ttcaaatgat gtaatatcat ttcctgtttt aatatcctga
     1261 atctgaacac ttgcttcaaa aggtgattta gggtctgctt ctatatgacc tacaatataa
     1321 gattttcctg catttcttaa ttcgagcgag attgttgtga attgtgaacc acctgcaatc
     1381 tccgatgccg gatttttgag agcttctttt acaggatttt tgaatgtggt attaccgtga
     1441 gagtacacat agtttccccc ctctttggta acttttaacg tttggttatc tgtagttgtg
     1501 caagaataca ctacattgtt atttgcaaaa gcattcattg agaaaaatgc tgataaagct
     1561 acaattgcca tttttttcat aggttagttt ccttttggtg cgttgataat gtaatcggct
     1621 tcctggttac gtcttcgagc attaacacca ttattatgcc cttgtaaatt tcggattgag
     1681 ttagctaaag ccgtcatatc acctgattgt gcggagacgg cagccgcttt ttgaacactt
     1741 tctagtttag ataatgaccc atagttgtat gataccgacg ttaatgctgc ttgtgcttga
     1801 ggagtcaatt tagcccaaac gtcggcacca acattacccc ttgcaacatt cataaattga
     1861 ggcattcttc gtgctaaatc acgttcagca tcttcccggc ttacataagt gcctttttga
     1921 acccgatgaa ccataccatc tgcagtagta taggtgtcag agccatatcc ggcacggtta
     1981 gcatttacat cccatttccc gtggcttaaa tatccttcaa actgtttgat aagagccgtt
     2041 gcttgttcat tcgcattgcc gttcatttgg gcaatttggg tatagctccc tacattcacg
     2101 ttactgacaa tgtttgttgg ggaggcttta tatgctccat aaaaatcact catgcctgag
     2161 ccgtctgatt tggggatagc aatatatcta tcgccaacgg cattttgtgc agaattagca
     2221 atgccactgg tgttgagatt atttgctccg gcttgattgc ttaaattggc aaagcgacgg
     2281 tttccatcac ccatcgcatt atcatcaata gcaagagctt gttcgttcat ctgttgagta
     2341 attgcagcta atgctgtatt accgttgatt gaacgttgca gttccatttc gagtttaact
     2401 tgctcaattt ctctgtcaag taatttgagg tttctttctg cttcttctac taaggaagat
     2461 tttataacat ttggctcacg cataccggct aacattgctc ggcgaatcag tagcaatttt
     2521 tccatttctt tagaaatagc taattcttgc gataaccttg cacccagcaa ggctgcatcc
     2581 ggcgaagcag caatggcttc taatacgcct tttgttacac tgaccgttga tgtactcagt
     2641 gaattgagtt gttccggcgt taaactatct aagtgattca gtgccgcttc tagctttgtg
     2701 gctttttcaa tagttgtttg ttcaataaaa tgggcgattc ctttcccggc tttagctcca
     2761 cttgaacttt gttcacaagt ttcacaggca tcaaggaatg tttcaccaat cacttcactt
     2821 gcataggcag cagcctcgct tggatttttc cattccgtac aaagcatacc atcacagctt
     2881 gcaataggta tatctccttt ttctaatggt cctcgtccta aagcgaggtt atatccggct
     2941 ccaacaatgt cagcaacgat agccattggt ttttgatttt taccaccacg ttgttcgcca
     3001 cctacccaag ggatgccttt ttcagcatct tttttatcca ttttcttctt ggctgccatt
     3061 gcatcaggct ctgtttcagc aatttcagcg gctcggtgta atccggccat ctttgctaat
     3121 ttactgtcca ttgctaaatc agcaagttgg ttagacatgg cttcgcaact ggttttgaag
     3181 ttgttgaagt caagttttcc ttgatataga ccattagaaa gaatgtcata cagttgagga
     3241 tttgctcgtt ggataatcat cgccgggagg ctggcaactg caccggttgc tgactcaata
     3301 atattgccat aaagatcttt aaaaccttca gtaataccat taagctggtt tttaatggaa
     3361 agtttaatat caaagttgcc acaagttaaa ttcgatttcc agccaatgcc aatcccatat
     3421 tgatttggtc tgccacggga agctggtgcg gaaatggcac tacctcctcc aatggagtag
     3481 tgcatataat cagaaaggac agggtagtat tccgtgagag cgttattacc agaaacgcct
     3541 agattaccag tcctatagcc tgttgtattt tcaataaaat tactaatgct attgccaaca
     3601 ttaacggtat tactatttgc gtatccgctc atggttgtga gcattataca agcggttaga
     3661 aatttgagac tttttgcttt tttcatttat ttatcctaat agtgctgata atttaatgag
     3721 tatgtgtact tttccagtcc acatgaccta aaaaaacttg cccttgtttt ttacagcaag
     3781 aatagggcct ccataatgcc cagctgtaat tctcagtatt ggagaaacta tctgaatggg
     3841 tagcccaatc accactgtgc ggaaagactt tagggtagga ttcggaagta aataccttaa
     3901 ctgttacatc tgagggttta ttagcaggac tagcacttgc catagctgaa agcagtagta
     3961 gtggtaaata gtaaaatgtc ttagcttgca taaatgctcc acaaatagag taattcacgt
     4021 ttaccttaaa agatgatttg gttagaagaa atcggaaatt gttttttggt tttggagagt
     4081 ttttgttagt atataagtta atgtaacaag ggagagtgga tgtatgagca atagaatacc
     4141 taaagcctgt tatgcttacc caaaatcgcc gaa
//
LOCUS       DANLZD010000172         4171 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.173, whole genome shotgun sequence.
ACCESSION   DANLZD010000172 DANLZD010000000
VERSION     DANLZD010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4171)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4171)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4171
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.173"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..455
                     /locus_tag="PXE26_002337"
     CDS             <1..455
                     /locus_tag="PXE26_002337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594877.1"
                     /translation="IIKNGICLNFARQLISAKHPETKKRISLHLKILDFDKGRNTYLA
                     PADLFILDEHLNEFILGNGGDEIEKISKNNKTQFSSTIRENQINFIRALLYMDYGIET
                     PQEVKNAINSGELGRKIEKFRRENPNIENDKNFKFPTSVTLSNWYSKA"
     gene            533..784
                     /locus_tag="PXE26_002338"
     CDS             533..784
                     /locus_tag="PXE26_002338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5594878.1"
                     /translation="MQLQKTISTFTQPNHRGIYVMTYSEQSYLNVKDVCEMLQLNRST
                     IYRQIKQGIFPKPTKIGKSSRWKFADIKAFLEPKPQEAN"
     gene            784..1164
                     /locus_tag="PXE26_002339"
     CDS             784..1164
                     /locus_tag="PXE26_002339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5594879.1"
                     /translation="MAGLSIICPFCGNTARIRGSSRPSLLSYQAQLTCSNCGQLKADF
                     VGQLINIKRAVFIECDEANQWDKPENELIKEGKIQGKDNAQRLKELRGSQQDLFAKVP
                     GQLPPEKITPAEKIAKRANLSKTH"
     gene            1475..2536
                     /locus_tag="PXE26_002340"
     CDS             1475..2536
                     /locus_tag="PXE26_002340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ash family protein"
                     /protein_id="HDL5594880.1"
                     /translation="MKDLSPNQKQYTPFSAIMQKNLMDLLTKSARSPYSFSTVAKSTA
                     GRENPELHNTANSSTPLTRAIFIRSLHTPKERRNKACSSMVACSGQGSPLAVFGSPFV
                     AVFSPRYTLSPCTVRSVADSPLKLTNGLQKMNPSQITGKNRLNSFLFNNNQNDYSLLF
                     TNAKQSTPISAKISKNQDLCLTTLNRSPYASRAFAKSKAECGNSKEHQANNSTPLTRA
                     FFVRSSRTPKECQNKACSSMVACSGQGFALDCLPDVAVFHPVTRYRPTLWKMLAIAPK
                     NQHQELSKMKAFAYSFLCAIRTPETDTYQETVVRIISDSEQNARFQLTADYRLLLPRP
                     VAKIRLNSTAYTVKGGIYA"
     gene            2529..2693
                     /locus_tag="PXE26_002341"
     CDS             2529..2693
                     /locus_tag="PXE26_002341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594881.1"
                     /translation="MLNYSDIEQIRYFMDQAEEALDNNEEFKAVAELNTAQQFILALL
                     MNYEQGGENE"
     gene            2686..3321
                     /locus_tag="PXE26_002342"
     CDS             2686..3321
                     /locus_tag="PXE26_002342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594882.1"
                     /translation="MNNTTGQATQRNWQEIIANLQRLSESGESTIEIAKRYEAFSKTA
                     EQIQALVNNNGSEAEKEAFFAPVERFYLGLLETETRLKDAIAKDEENAQKLKEQKAAR
                     EAEQKRWDNLPFYAKDKFSDLICIESRETLEDKFFAISCMFDALKAVPNLLEIGLREE
                     GKDSVIDRLAEMSKLYLLFVDEQFSLLANEIQSGKYGKLDLNGSQNKGDLC"
     gene            3315..3533
                     /locus_tag="PXE26_002343"
     CDS             3315..3533
                     /locus_tag="PXE26_002343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594883.1"
                     /translation="MLTHRITLPDGTEIEFFAETDKETFAEIQRDLEGLKLPTFAEFV
                     AQERKKHRAKQAVKKARKIAKLARRKNR"
     gene            3675..4160
                     /locus_tag="PXE26_002344"
     CDS             3675..4160
                     /locus_tag="PXE26_002344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594884.1"
                     /translation="METALQLAQHLTGWTEEENSQAILKNFLDWKETFGEKTREETKI
                     VETLLDWINENEASFIEYPFNQEQRTPPKVAGYRILANNSTKTNEYFFIYPKQFKETL
                     AEFPLLMACTKLHEAGILHKPPRPEKGYEFQYTIAPKITGGSKKRAYKIVPIALEEEN
                     E"
BASE COUNT         1522 a          863 c          793 g          993 t
ORIGIN      
        1 aaatcattaa aaatggaatt tgtttaaatt ttgcaagaca attaatatca gcaaagcacc
       61 cagaaacaaa aaaaagaata agtttacatc taaaaatact ggattttgac aaaggcagaa
      121 atacttattt agcacctgca gatttattta ttcttgatga acatctaaat gagttcatat
      181 taggtaacgg cggagatgaa atagaaaaaa tatcaaagaa taacaaaact caattcagct
      241 caacaatacg agaaaaccaa atcaatttta ttagagcctt gctttatatg gattatggga
      301 tagaaacgcc tcaagaagta aaaaacgcca ttaattcagg ggaactaggc agaaaaatag
      361 agaaatttag gagagaaaac cccaatatag agaacgataa aaatttcaaa ttccctacaa
      421 gtgtaaccct tagcaactgg tattcaaaag cctaaaatat tggaaatttc cgaatctact
      481 ttggaaattt ccaaacttct aaaacctact cacctcacaa tctcccccaa caatgcaact
      541 acaaaagaca ataagcacat tcacgcaacc aaaccacagg gggatttatg taatgaccta
      601 ttcagaacaa agctatttaa acgtgaaaga tgtatgcgaa atgctacaac tcaaccgctc
      661 aactatttat cgacaaatta agcaagggat tttccctaag ccaactaaga tcggaaaatc
      721 aagccggtgg aaatttgccg acatcaaagc atttttagag ccaaaaccac aggaggcgaa
      781 ctaatggcag ggctttctat tatttgcccg ttttgtggca ataccgcacg aattagaggc
      841 agttctcgcc ctagcctttt aagttatcaa gcacagctaa cttgttcaaa ttgcggacaa
      901 ttaaaagccg actttgtagg gcagctaatc aacatcaaac gggccgtatt tattgagtgt
      961 gatgaagcaa atcaatggga taaacccgaa aatgaactaa tcaaggaggg aaaaattcaa
     1021 ggcaaagaca atgctcaacg cctcaaagaa ctaagaggct cacagcaaga tttatttgca
     1081 aaggtgccgg ggcaactacc gcccgagaag atcactccgg cggagaaaat cgccaagcgg
     1141 gcaaaccttt caaaaacgca ttaaacaggg ggataaatgg caacaaaaaa gccccgcaag
     1201 gcaaaccata cggagctatt aaaatcgcat aatgcgaaag atatgcaaag aaattaaagc
     1261 aggcttgacg atttctgaag gtgttagatt ctttctaaag tctttaggga taggtttatt
     1321 tctagcattg tttttttatt ttttgccgta tttagcagaa tttataatcg ccgtaaaaaa
     1381 acaactagca aaaaaatcgg cttactttca atgataaaag caagccgaaa tgacaatcca
     1441 aatttttaac tttaaataaa gagtacaaga agaaatgaaa gatttatctc caaatcagaa
     1501 acaatatacg ccattttcgg ctataatgca aaaaaattta atggatttat tgacaaaatc
     1561 cgcccgttcg ccttattctt tctctaccgt tgcaaaatca acggcagggc gtgagaaccc
     1621 tgaactacat aatacggcga acagtagcac gcctttaacc cgtgctattt ttattcgtag
     1681 cttacacaca cctaaagaac gccgaaataa ggcgtgttcg tctatggtag cgtgtagcgg
     1741 gcaaggttcg cccttggctg tttttggttc gccgtttgta gcagttttct caccccgtta
     1801 cacgctatcg ccctgcaccg tgagaagtgt agccgatagt cctttaaaat taacaaacgg
     1861 actacaaaaa atgaacccta gccaaattac aggcaaaaac cgcctaaact cttttctatt
     1921 taacaataat caaaatgatt attcgctatt atttactaat gcaaaacaat caaccccgat
     1981 ttctgctaaa ataagcaaaa atcaagattt atgcttgaca accctcaatc gttcgcctta
     2041 tgctagccgt gcttttgcaa aatcaaaagc cgagtgtgga aactcgaaag aacatcaggc
     2101 gaacaatagc acgcctttaa ctcgtgcttt ttttgttcgt agctcacgca cacccaaaga
     2161 atgccaaaat aaggcgtgtt cgtctatggt agcgtgtagc gggcaaggtt tcgcccttga
     2221 ctgcttacct gatgttgcag ttttccaccc cgttacacgc tatcgcccta cattgtggaa
     2281 aatgttagcg atagccccta aaaatcaaca tcaggagcta tcaaaaatga aagcattcgc
     2341 ttattcattc ctttgtgcta ttcgcacacc cgaaacagat acttatcaag aaaccgtagt
     2401 acgcattatt tcagacagcg aacaaaacgc ccgttttcag cttacagccg attatcgctt
     2461 actactcccc cgccctgttg caaaaatccg cctaaattct accgcttaca cggtgaaagg
     2521 ggggatttat gcttaattat tccgatattg aacaaatccg ctattttatg gatcaagccg
     2581 aagaggcttt agacaataat gaagagttca aagccgtagc agaacttaac acagcacaac
     2641 aatttattct ggctttatta atgaactacg aacaaggggg tgaaaatgaa taatacaaca
     2701 ggacaagcta cgcaaagaaa ctggcaagaa attatcgcta atttgcagag actcagcgaa
     2761 tccggggaaa gcacaatcga aatcgctaaa cgctatgagg cattttctaa aaccgccgag
     2821 caaatccaag ccctagtgaa taacaacggc agcgaagccg aaaaagaggc gttttttgcc
     2881 cctgttgagc gtttttatct tggcttacta gaaaccgaaa cacgcttaaa agatgccata
     2941 gccaaagacg aagaaaacgc ccaaaaattg aaagagcaaa aagcagctag agaggcagag
     3001 caaaaaagat gggacaacct acctttctac gccaaagaca aattcagtga tttaatttgc
     3061 attgaaagcc gagaaacgct tgaagataaa ttctttgcga tctcttgtat gttcgatgcc
     3121 ctaaaagccg tacctaatct attagaaata ggcttgcgtg aagaaggcaa agacagtgtt
     3181 atagaccgat tagccgaaat gagcaaactc tatttactgt ttgtagatga gcaattttca
     3241 ctactggcaa acgaaattca aagcggtaaa tatggcaagt tagacctaaa cggctcacag
     3301 aataaggggg atttatgcta acgcaccgca ttacactccc tgacggcaca gaaattgaat
     3361 tttttgcaga aaccgacaaa gaaacatttg cagaaattca aagggactta gagggcttga
     3421 aattgccaac ctttgccgag tttgttgccc aagagcggaa aaaacaccga gcaaaacaag
     3481 cggtcaaaaa agcccgaaaa attgcaaaat tagcaagacg gaaaaaccgc tagcacctat
     3541 caaaaagact tattattgca gaaaatcacg ctttaataaa aacgacctat aaagcaatcc
     3601 gcaagaaatg gttaagttta actgaaaata tgagcggaca ggttcagcgg gtagcgtgcg
     3661 atagattcgc aataatggaa accgccttgc agttagccca acatttaaca ggctggacag
     3721 aggaagagaa cagccaagcg attttaaaaa acttcctaga ctggaaagaa actttcggcg
     3781 aaaaaacaag agaagaaact aaaatagtag aaaccttgct agattggata aatgaaaatg
     3841 aggcgagttt tatcgagtac ccattcaacc aagagcaaag aacaccgcct aaagttgccg
     3901 gctatagaat acttgcgaat aacagcacta aaacaaatga gtactttttc atttacccta
     3961 agcaatttaa agaaacgctg gcagaatttc cgctattgat ggcttgcacc aagttacacg
     4021 aggcagggat tttacataag ccaccacgcc cagaaaaagg ctatgaattt cagtacacaa
     4081 tagcccctaa aataacagga gggagcaaaa aaagagctta taaaatcgta ccgatagcat
     4141 tggaagaaga aaacgagtaa ttacagcaaa a
//
LOCUS       DANLZD010000173         4171 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.174, whole genome shotgun sequence.
ACCESSION   DANLZD010000173 DANLZD010000000
VERSION     DANLZD010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4171)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4171)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4171
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.174"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            14..472
                     /locus_tag="PXE26_002345"
     CDS             14..472
                     /locus_tag="PXE26_002345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein CcmH"
                     /protein_id="HDL5594885.1"
                     /translation="MLLSVTVNAAPVELHQFDSPKQESDYRALIQELRCPQCQNNNIA
                     DSNATIATDMRAKTLELLKQGKSKDEVVDYMIERYGNFVTYDPPLTPATIMLWLLPLI
                     LIALGLGVVLRRKKNKPQAVNFEQNTAKPTTHLAQDEQERLNQILNKEEK"
     gene            469..1380
                     /gene="ccmI"
                     /locus_tag="PXE26_002346"
     CDS             469..1380
                     /gene="ccmI"
                     /locus_tag="PXE26_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcmI"
                     /protein_id="HDL5594886.1"
                     /translation="MNFWLAIIFVTLIVCGVAFYPLLKKNKQIDNTKRDSLNKAFYFD
                     RLKEVENEANEGVIDDPEQTKLELQKNLLDDIPHSTQSATSEKLTLGKSWFVALILFV
                     GGISFAIYSNVGSWFSNSMLDTTHQKLDSFYERLKTEETNPLSQEEMNQFAMALRVDL
                     QSNPNDDKKWYMLGQIGMALDDGQLAHDAFSKAAQLKPDNLDYKLSHAQLLLFSEAQE
                     DKKQGETLLKEIIRQDHTNFNALSLLAFHSFEKEDFKMAAMTWGMMLKLLPDEDPSKV
                     TVERSFNMALSNLSEAEKQELQKGEKK"
     gene            1377..1982
                     /gene="mog"
                     /locus_tag="PXE26_002347"
     CDS             1377..1982
                     /gene="mog"
                     /locus_tag="PXE26_002347"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HDL5594887.1"
                     /translation="MTACKPLSKEKLKIGLVSVSDRASQGVYSDQGIPELRAWLESAL
                     TEPFELETRLIPDEQAIIEQTLIELVDAHACHLVLTTGGTGPAKRDVTPDATLAVAHR
                     EMPGFGEQMRQVSLHFVPTAILSRQVGVIRHDSLILNLPGQPKAIKETLEGVKDEQGK
                     VLVKGIFSAVPYCLQLLSEIYVETHAAICESFRPKSARREN"
     gene            1992..2330
                     /gene="glnB"
                     /locus_tag="PXE26_002348"
     CDS             1992..2330
                     /gene="glnB"
                     /locus_tag="PXE26_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulatory protein P-II"
                     /protein_id="HDL5594888.1"
                     /translation="MKKIEAIIKPFKLDDVREALTDVGVSGMSITEIKGFGRQKGHTE
                     LYRGAEYAIDFLPKVKVEIVIPDELEEQCIEAIMETAQTGKIGDGKIFVYDVGRVIRI
                     RTGEENEEAI"
     gene            2411..2890
                     /gene="lspA"
                     /locus_tag="PXE26_002349"
     CDS             2411..2890
                     /gene="lspA"
                     /locus_tag="PXE26_002349"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HDL5594889.1"
                     /translation="MKTGLKFLWVSLIVIIIDLWSKYIVVQHFEFGESINILPIFNFT
                     YARNYGAAFSFLADHSGWQKYFFLGLAVVISSALVVALWKNQAVKKLENIAYALIIGG
                     AIGNAIDRAYNGYVVDFLHFYWDIYHYPVFNIADIAICVGAGLLILEAFITKKEPKK"
     gene            2901..3845
                     /gene="ispH"
                     /locus_tag="PXE26_002350"
                     /gene_synonym="lytB"
     CDS             2901..3845
                     /gene="ispH"
                     /locus_tag="PXE26_002350"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HDL5594890.1"
                     /translation="MKILLANPRGFCAGVDRAISIVELALEIHGAPIYVRHEVVHNKF
                     VVDGLKAKGAIFVEELHEVPDDAIVIFSAHGVSQVVRQEAKNRGLKVFDATCPLVTKV
                     HMQVARASKKGTKAILIGHEGHPEVIGTMGQYNNQEGGIYLVESVEDIANLPVSNNDE
                     LTFMTQTTLSIDDTIGVIEALKEKYPAIQGPRKNDICYATTNRQHAVRELAEQSQLVL
                     VVGSKNSSNSNRLAELASRMGVMSKLIDGPQDIDPTWLEGIETIGITAGASAPEVLVQ
                     SVISHLKTLGVTEVETLVGNEEDVVFEVPKELRIKEVK"
     gene            3845..4093
                     /locus_tag="PXE26_002351"
     CDS             3845..4093
                     /locus_tag="PXE26_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HDL5594891.1"
                     /translation="MTEINRFKLEWACRRGMRELDKMIMPFYQNHFNELNETQQQAFV
                     EMLNYSDPELFRWVMLQAPAPTEEIAELIRLMRDKIET"
BASE COUNT         1298 a          850 c          944 g         1079 t
ORIGIN      
        1 tctcagccta ataatgcttc taagtgtaac agttaatgct gctccggtag aactgcacca
       61 attcgacagc ccgaaacaag agtcggacta tcgtgcctta attcaagaac tgcgttgccc
      121 gcagtgtcaa aataataata tcgccgattc caatgcgact attgccaccg atatgcgggc
      181 aaaaacctta gaattgctca aacaaggcaa aagcaaagac gaagtggtgg attatatgat
      241 tgaacgctac ggcaatttcg tcacttacga cccgcctctc acaccggcaa ccattatgtt
      301 atggctgttg ccgttaattt taattgcctt agggctgggg gtggtgttgc gtagaaagaa
      361 aaacaaacca caagcggtca attttgagca aaatactgca aaaccgacca ctcatctcgc
      421 tcaagatgag caagaacgtc ttaaccaaat tctcaataag gaagaaaaat gaatttctgg
      481 ctggcaatta ttttcgttac actgattgta tgtggcgtgg cgttttatcc gttacttaaa
      541 aagaacaagc aaatcgataa caccaagcga gacagcttaa acaaagcctt ctattttgac
      601 cgcttaaaag aagtggaaaa cgaagcgaat gaaggggtga ttgatgaccc tgaacaaacc
      661 aaattagagc tacaaaaaaa cttgcttgat gatattccac acagcacaca aagtgccaca
      721 agtgaaaaat taacgctcgg caagtcgtgg tttgtggcat tgattttatt tgtcggcggt
      781 atcagctttg cgatttacag caatgtcggt tcttggttct ccaactcaat gttagacacc
      841 actcaccaaa aattagacag cttctatgag cgtttaaaaa ccgaagagac caatccgctc
      901 tcacaagagg aaatgaacca atttgcgatg gcattacggg tagatttaca aagtaatccg
      961 aatgacgaca aaaaatggta tatgctcggt caaatcggga tggcgttaga tgatggtcag
     1021 cttgcacacg atgcctttag caaagcggct caactcaagc cggataactt agattacaaa
     1081 ctcagccacg cccaactgct gctcttttcc gaagcacagg aagacaaaaa acagggtgaa
     1141 accttgttaa aagagattat ccgccaagac cacacaaact ttaatgcgtt aagtttattg
     1201 gcgttccact cctttgaaaa agaagatttc aaaatggcgg caatgacgtg gggaatgatg
     1261 ttaaaactac tgcctgatga agatcctagc aaagtaacgg tagaacgcag ttttaatatg
     1321 gcgttatcca atttaagtga ggcggaaaaa caagaattgc aaaaaggtga gaaaaaatga
     1381 ccgcttgtaa accacttagc aaagagaagt tgaaaatcgg cttggtgtcg gtttcagacc
     1441 gagcctcgca gggggtttat tcagaccaag gcattcccga attaagggcg tggcttgaat
     1501 ctgccttaac cgagccgttt gagctggaaa cccgcttaat tcccgatgag caagccatta
     1561 ttgagcaaac cttaatcgag ttagtcgatg ctcacgcttg ccatttggta ttaaccaccg
     1621 gcggcaccgg cccggcaaaa cgtgatgtca ccccagatgc cacccttgct gtcgcccacc
     1681 gagaaatgcc cggctttggc gaacagatgc gacaagtgag ccttcacttc gtgccaaccg
     1741 ccattctctc tcgccaagtg ggagtaattc gccacgacag tctgatttta aatctgccgg
     1801 ggcaaccgaa agcaattaaa gaaacgctgg aaggtgtgaa agatgaacag ggcaaagtat
     1861 tggttaaagg tatttttagt gccgtgccat actgtttaca acttttaagc gaaatttatg
     1921 tcgaaaccca cgcagctatt tgcgaaagtt tcagacccaa atcggcaaga cgagaaaatt
     1981 aaggctaaaa aatgaaaaaa atagaagcaa ttattaaacc ttttaaatta gacgatgtgc
     2041 gtgaagcctt aaccgatgtg ggtgtcagcg gaatgagtat taccgaaatc aaagggtttg
     2101 gcagacaaaa aggacatacc gagctttatc gtggggcgga atatgcgatt gattttctac
     2161 cgaaagtgaa agtcgaaatc gtgattcccg acgagttgga agaacagtgc attgaagcaa
     2221 ttatggaaac cgcccaaacc ggcaaaatcg gcgatggcaa gatttttgtg tatgatgtcg
     2281 ggcgggtgat ccgcattcgt accggcgaag aaaatgaaga agcgatttag ttttgcaaaa
     2341 aatccggcaa aaacgaccgc ttgcaggggg atttccatct actcttttta cattaaattt
     2401 tggatattaa atgaaaacag gcttaaaatt tctttgggtg agtttaattg taatcatcat
     2461 tgacctttgg tcaaaataca ttgtagtgca acattttgaa tttggtgaaa gcattaatat
     2521 tttgccgatt tttaacttca cttacgcccg aaactacggg gctgccttta gtttccttgc
     2581 cgaccattcc ggctggcaaa aatatttctt tttagggctg gcggtagtga tttccagtgc
     2641 tttagtggtg gctctttgga agaatcaagc ggtcaaaaaa ttagaaaata ttgcgtatgc
     2701 cttaattatt ggtggagcga ttgggaatgc cattgaccgt gcttacaacg gctatgtagt
     2761 tgatttcctt catttttatt gggatattta tcactaccct gtgtttaata ttgccgatat
     2821 tgcgatttgt gtgggtgcag gcttactgat tttagaagcc tttataacca aaaaagaacc
     2881 gaaaaaataa gagtgattaa atgaaaattt tattagcaaa cccacgcggt ttttgtgccg
     2941 gcgtggatcg agccatttcg attgttgaat tagccttaga aattcacggt gcacctatct
     3001 atgttcgcca cgaagtggta cataacaaat ttgtggtgga tggcttgaaa gccaaagggg
     3061 ctatttttgt tgaggagcta cacgaagtgc cggacgatgc tatcgtgatc ttctcagccc
     3121 acggggtgtc gcaagtagtt cgccaagaag ccaaaaatcg tggcttaaaa gtgtttgatg
     3181 ccacttgccc actcgtgacc aaagtgcata tgcaggttgc ccgagccagt aaaaaaggga
     3241 caaaagcaat tttaatcggt cacgaaggtc accctgaagt tatcggcaca atgggacaat
     3301 acaataacca agaaggtggc atttatttgg tagaatcggt ggaagatatt gccaacttgc
     3361 cggtttccaa caacgatgaa ttaactttta tgacgcaaac cacactttcc attgacgata
     3421 ccattggcgt gattgaggcg ttaaaagaga aatatccggc aattcaaggc cctcgcaaaa
     3481 atgatatttg ttatgctacc accaatcgcc aacacgcagt gcgggaactg gcagaacaat
     3541 cacaattagt gttagtggta ggttcaaaaa actcctcgaa ctcaaatcgt ttggcggaac
     3601 tcgcctctcg aatgggtgtg atgtcaaaac tgattgatgg tccgcaagat attgatccaa
     3661 cttggttgga gggtattgaa actatcggta ttaccgccgg tgcttccgct cctgaagtgt
     3721 tggtgcaatc agtaatttcg catttaaaaa cccttggcgt aaccgaagtt gaaaccttag
     3781 tcggcaacga agaagacgtg gtgtttgaag tcccgaaaga gttacgcatc aaagaggtaa
     3841 aataatgaca gaaatcaacc gctttaaatt agaatgggcg tgccgacgtg gtatgcgtga
     3901 gttagacaaa atgattatgc cgttttacca aaatcatttt aatgaactca atgaaaccca
     3961 acagcaagct ttcgttgaaa tgctcaatta cagcgacccg gaactgtttc gctgggtaat
     4021 gctgcaagca cctgccccaa ccgaagaaat cgctgaattg attaggttaa tgcgagataa
     4081 aattgagacc tagagctaat agattaacct cttctttggg gtaaatatat agctacttac
     4141 cccaaagaag actaaattca ttcaactttt a
//
LOCUS       DANLZD010000174         4145 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.175, whole genome shotgun sequence.
ACCESSION   DANLZD010000174 DANLZD010000000
VERSION     DANLZD010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4145)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4145)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4145
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.175"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..199)
                     /locus_tag="PXE26_002352"
     CDS             complement(<1..199)
                     /locus_tag="PXE26_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5594892.1"
                     /translation="MRKSRLSQYKQNKLIEQFVAGVTARTASELVNVNKNTAAYYFHR
                     LRLLIYQHSPHLEMFEGEIEVD"
     gene            528..1886
                     /gene="mnmE"
                     /locus_tag="PXE26_002353"
     CDS             528..1886
                     /gene="mnmE"
                     /locus_tag="PXE26_002353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HDL5594893.1"
                     /translation="MKDTIVAQATPIGRGGVGILRVSGPLAETVAQAVLGKTLPPRIA
                     NYLPFKDEDGTVLDQGIALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILQVKGLR
                     IARAGEFSEQAFLNDKLDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINALVDS
                     VIYLRTYVEAAIDFPDEEIDFLADGKIEAKLNEIIAQLDGVRREAKQGSILREGMKVV
                     IAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS
                     DEVERIGIQRAWEEIAQADHVLLMIDSTEQQADQFRQEWAEFLAKLPANMPVTVIRNK
                     VDLSGEQEGLIQVDDFTMIRLSAQTKVGVDLLREHLKKSMGYQSSTEGGFLARRRHLQ
                     ALETAAEHLERGHIQLTQFLAGELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCI
                     GK"
     gene            1887..3152
                     /gene="tilS"
                     /locus_tag="PXE26_002354"
     CDS             1887..3152
                     /gene="tilS"
                     /locus_tag="PXE26_002354"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HDL5594894.1"
                     /translation="MALFNRFQTQCATHLPNQTAFLIGLSGGVDSVVLLHLFARTSFH
                     VRAIYVHHGLSPNADDWAAFCEQYCKRLNIPFILQKVRVDSSNGVENGAREARYQAIQ
                     QQLKPNEVFATAHHLDDQAETFLLALKRGSGVKGLSAMQAVTFLQNFTVFRPLLTFTK
                     SDLMGYAVQHQLGWIEDESNADNRYDRNFLRNSILPLLNQRWQHFSQMVARSAQHCAE
                     QQALIEELLSNELKSRTGEKQQLNINGFGQFSLAKQQQLSRLWLEQNGVRMPSQAQLQ
                     AVISELIFAKADKNPQVKVGENIIRRYQQAIYVTEEIADIPPFEVVLPTETKVELPYQ
                     LGTIIRQQQEIICKKNGKNHRLQLPQELAQSTISIKIGQLGKVKCYGKAQREEMKKIW
                     QNHGIPVWERNRTPLIFWQDELVGLLPIL"
     gene            complement(3142..4035)
                     /gene="xerD"
                     /locus_tag="PXE26_002355"
     CDS             complement(3142..4035)
                     /gene="xerD"
                     /locus_tag="PXE26_002355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HDL5594895.1"
                     /translation="MAELDPIIEQFLDTLWQEHGLSENTVASYRSDLERFSDYFSEPK
                     AFLSLDHIDLQGFLGERLEQGYKATSSARMLSCLRKFFRFLCLEHYRQDDPTLTLSSP
                     KRGASLPKSLSEDQVMDLLDAPNTLDPIELRDKAMLELLYATGLRVTELVSLSMDNIS
                     LKQGVVRIIGKGDKERLVPLGEEANYWIQEFFQYGRPILLNNQQSDVVFPSRRGQQMT
                     RQTFWHRIKHYAVLAGIDADKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQ
                     IYTQVAKARLKSLHQQFHPRG"
BASE COUNT         1205 a          962 c          931 g         1047 t
ORIGIN      
        1 catcaacctc aatttctccc tcaaacattt ccaaatgagg gctatgttga tagataagca
       61 accgcaagcg atggaagtaa tacgccgccg tgtttttgtt tacattgacc aactcagatg
      121 ctgttcgggc tgttacccct gcaacaaact gctcaatgag tttgttttgt ttgtactgac
      181 ttagacgact ttttctcatt tgggtatctt aacctaaatg gagtttttag tcgttatcta
      241 ggacagcccc aaagaaaaac acgctttgca ttgaaaaaaa ggcggtggtg gaaataaaac
      301 ggcgtaggag taatagtttt tctaaagaca ttcagaatgg ttgaattggt taaataaaga
      361 gcggttattc taccttttaa gtcaacccca atcaatcggc ttttgtttta cctttggcgt
      421 gggtttcggt atgataagcg atatgtagtg gcgggtcctg tgcccgccta aataccaatg
      481 ataacttgcg ggcgagcaca ggactcgccc ctacgataaa caagaaaatg aaagacacca
      541 ttgttgctca agcaacaccg attggcagag gcggtgtggg gattctgcga gtttccggtc
      601 cgcttgccga aaccgttgct caagccgtat taggcaaaac attgccaccc cgtatcgcaa
      661 attatttgcc gtttaaagac gaagatggca ctgtgttgga tcaaggcatc gccttatttt
      721 ttaaagctcc caactccttt accggcgaag atgtgcttga acttcaagga cacggtgggc
      781 aggttatttt agatttactg ctcaaacgca ttttacaagt taaggggcta cgcattgccc
      841 gagcaggtga attttccgaa caggcatttt taaacgataa gctcgacctt gcccaagctg
      901 aagcgattgc ggatttaatc gacgccacca gcgagcaagc cgctcgttca gccctgaaat
      961 cactacaggg tgaattttct aataaaatca atgcgttagt tgattcagta atttatttac
     1021 gcacttatgt ggaagcggcg attgacttcc ccgatgagga aattgacttt ctggcagacg
     1081 gtaaaatcga ggcaaaatta aatgagatta tcgctcaatt agacggtgtt cgccgtgaag
     1141 cgaaacaagg ctcgattctg cgtgaaggaa tgaaagtagt gatcgccggt cgcccgaatg
     1201 cagggaaatc aagcttgctt aacgccttag ccggacgaga ggcggcgatt gtaaccaata
     1261 ttgctggcac aacccgtgat gtgttgcgtg aacatattca cattgacgga atgccgttgc
     1321 atattatcga caccgccggt ctccgtgatg ccagtgatga ggtggaacgt atcggcattc
     1381 agcgtgcttg ggaagaaatc gcccaagccg accacgtttt attaatgatt gacagcaccg
     1441 agcaacaagc cgatcagttc cgacaagagt gggcggaatt tctagccaaa ctgccggcaa
     1501 atatgcctgt gaccgtaatt cgcaacaaag tcgatttatc cggcgagcag gaaggcttaa
     1561 ttcaggtgga cgatttcacg atgattcgcc tctctgccca aaccaaagtc ggcgttgatt
     1621 tattgcgtga acacttgaag aaatcaatgg gctaccaaag ttctacggaa ggcggattct
     1681 tggctcgccg ccgtcatctg caagcattgg aaaccgctgc cgagcattta gagcgagggc
     1741 atatccagct tactcaattc ttagccggcg aattgttagc ggaagagttg cgtatggtgc
     1801 aaaatgcctt aagtgaaatt accggccagt tcacctctga tgacttatta ggcaacattt
     1861 tcagctcatt ttgcatcggt aaataaatgg cactttttaa ccgctttcaa acccagtgtg
     1921 caacgcattt gccgaaccaa accgcctttt taatcggctt aagcggtggg gtggattcgg
     1981 tggtactact ccaccttttt gcccgcacct catttcacgt tagggcaatt tatgtccacc
     2041 acgggctaag cccaaatgcg gacgactggg cagccttttg cgaacaatat tgcaagcggt
     2101 taaatattcc ctttatttta caaaaggtca gagtggatag ctcaaacggc gttgaaaacg
     2161 gggcgagaga agctcgttac caagccattc aacaacagct taagcccaat gaagtgttcg
     2221 ccaccgccca ccatttagat gaccaagccg aaactttttt gctcgccctc aagcgaggca
     2281 gtggagtcaa aggattatcg gcgatgcaag cggtcacttt tttgcaaaat tttaccgttt
     2341 ttcgaccgct actcactttt actaagtcag atttgatggg ttatgccgtt caacatcagc
     2401 taggttggat tgaggacgaa agcaatgccg ataaccgtta cgaccgtaat ttccttcgca
     2461 atagcatctt gccactactc aatcaacgtt ggcagcactt cagccaaatg gttgcccgtt
     2521 ccgctcagca ttgtgcagaa cagcaagcct tgatagaaga gctattaagc aatgaactca
     2581 agtcaagaac aggggaaaaa caacaactca acattaacgg ctttgggcaa ttttcacttg
     2641 ccaagcaaca gcaacttagc cgcctttggc tggaacaaaa cggagtgaga atgccaagcc
     2701 aagcccagct acaagcggtc atttctgaac tgatttttgc aaaagccgat aaaaacccac
     2761 aggttaaagt cggcgaaaat attatcagac gctatcaaca agctatttac gttaccgaag
     2821 agatcgccga cattccgccg tttgaggtag tacttcccac agaaaccaaa gtggaattac
     2881 cctatcagct cggtactatt attcgccaac aacaagagat catttgcaaa aaaaacggga
     2941 aaaatcaccg cttgcaactg ccccaagagc tggctcaatc aactatttct attaaaatcg
     3001 ggcaactagg caaagtaaaa tgctacggca aggctcaacg ggaagaaatg aaaaagattt
     3061 ggcaaaatca cggcatacct gtttgggaac gcaaccgtac accgctgatt ttttggcaag
     3121 acgaattagt tggcctatta cctatcctct agggtgaaat tgctgatgaa gcgatttcaa
     3181 acgggctttt gccacttgag tgtaaatctg ggtggtcgat aaatcactat gccccagcaa
     3241 catctgtacc actcgcaaat cagccccatg attgaccaaa tgggtcgcaa aggcgtggcg
     3301 aagcacgtga ggcgagagtt tatctgcatc aatacctgca agcacggcat agtgcttaat
     3361 ccgatgccaa aacgtctgcc ttgtcatctg ctgacctcgc cggctcggaa atacaacatc
     3421 agactgctga ttattcagca aaatagggcg accgtactgg aaaaactcct gtatccaata
     3481 attcgcctcc tcgcccaatg gcactaaccg ctctttatcc cctttaccga taattctcac
     3541 caccccttgt ttgaggctga tattatccat cgaaagcgac accagctccg ttacccgcag
     3601 accggtggca tacagcagct ccagcattgc tttatcccgt aactctatcg gatctaacgt
     3661 attcggggca tctagcaaat ccattacctg atcttcactt aaggatttgg gtaaagaagc
     3721 accccgttta ggggaagaaa gggttaaagt cgggtcatct tggcgataat gctcaaggca
     3781 taaaaaacgg aaaaatttcc ttaaacaact caacattctg gcagagcttg tcgccttata
     3841 gccttgctcc aaacgctcgc cgagaaaacc ttgtaagtcg atatgatcga gagacagaaa
     3901 tgctttaggt tcagaaaaat aatcggaaaa acgctctaag tcagaacgat aagaggcaac
     3961 ggtattttca gacaaaccgt gttcttgcca tagtgtatcg agaaattgtt caataatagg
     4021 gtcaagctca gccatacaag cgggtatatt ttcaggaaat tttgcaaatt ttaacagaat
     4081 taaatctata aaaatacaaa agcgatagaa acgaaaaaac cgattagctt atgctaatcg
     4141 gttta
//
LOCUS       DANLZD010000175         4124 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.176, whole genome shotgun sequence.
ACCESSION   DANLZD010000175 DANLZD010000000
VERSION     DANLZD010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4124
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.176"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(55..474)
                     /locus_tag="PXE26_002356"
     CDS             complement(55..474)
                     /locus_tag="PXE26_002356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594896.1"
                     /translation="MLRLLSFCFIFLLSACTVLPQIKQLPPQVESVKSFKVENNGQQS
                     LLLIQFYENKWRWIQTDPLGAPIARVWLTKKGWEPDGFVMPNKQAQLLFTALVNALNP
                     HSPPFYLDKGWKIEREKSQFTIWLPDSSKWKVEILGE"
     gene            complement(536..1225)
                     /gene="rplA"
                     /locus_tag="PXE26_002357"
     CDS             complement(536..1225)
                     /gene="rplA"
                     /locus_tag="PXE26_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HDL5594897.1"
                     /translation="MAKLTKKMKAIKAGVDSTKAYDINEAVEVLKKFATAKFVESVDV
                     AVNLGIDSRKSDQNVRGATVLPHGTGRTARVAVFTQGANAEAAKAAGADLVGMEDLAE
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQ
                     IRYRNDKNGIIHTTIGKADFSAEQLKDNLNALLAALTKAKPTTAKGIFIKKVSISTTM
                     GAGVAVDQASL"
     gene            complement(1230..1658)
                     /gene="rplK"
                     /locus_tag="PXE26_002358"
     CDS             complement(1230..1658)
                     /gene="rplK"
                     /locus_tag="PXE26_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HDL5594898.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     RTESLEKGLPIPVVITVYADKSFTFVTKTPPAAVLLKKAVGIKSGSGKPNKDKVGTVT
                     QEQIRQIAETKAADMTGATIETKMKSIAGTARSMGLIVEE"
     gene            complement(1891..2454)
                     /gene="nusG"
                     /locus_tag="PXE26_002359"
     CDS             complement(1891..2454)
                     /gene="nusG"
                     /locus_tag="PXE26_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HDL5594899.1"
                     /translation="MSEVEVKENGSKRWYVLQAFSGFENRVAVTLREYIKLHKMEEQF
                     GEVLVPTEEVVENVGGKRRKTERKFFPGYVLVEMEMNDDTWHLVKSVPRVMGFIGGTA
                     DRPAPITKREADRILNRVQETAEKPRHRKEFQPGESILVTEGPFADFSGTVEEVDYEK
                     GRLKVSVSIFGRATPVELEFSQVEKQS"
     gene            complement(2456..2869)
                     /gene="secE"
                     /locus_tag="PXE26_002360"
     CDS             complement(2456..2869)
                     /gene="secE"
                     /locus_tag="PXE26_002360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HDL5594900.1"
                     /translation="MATEIKTKTPEQVEQKGGKSKGANTALWLVAIVFLAVAAVGNAY
                     FSSHFSLIVRVLLLVVLLVGAVALAAITNQGQKAIHFIKESRTELRKIIWPTRPEATQ
                     TTLIVLAMCVVVSLVLWGIDSIIVALITFVTSLRF"
     gene            complement(2982..4004)
                     /locus_tag="PXE26_002361"
     CDS             complement(2982..4004)
                     /locus_tag="PXE26_002361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5594901.1"
                     /translation="MANGTSRNRRSSGRVTLADVAKVVGVGQMTVSRALRTPEMVSEP
                     LRKRIEEAIIELGYIPHFSARQLASAESHNLVIVTTSISSTENTLILSALRKSVADSA
                     LQMVILIADQESWFQELINHAPQAIVFLNLDCPPNVREWIKNSNIPTVEIGAIKKEPI
                     HLSVGIDSHEAMEKMIHFLVKKGYREIGLLSAKQDLSIFKQYLESWHTTLFAHHISPL
                     KIHHVVEDISFSAGATLLTEALLNWEAIDALVFLSDELACGALYEALRRHMSIPKDLA
                     IAGLGGLEVGSISYPKLTTIAIPYEQMGKIAGKQLLTLLSGKTLSAEEMIVKLPTKLV
                     IRDSAA"
BASE COUNT         1180 a          889 c          730 g         1325 t
ORIGIN      
        1 aaaattataa aattcatatt caagtgattc aagcatagag gttcaagttt tcgcttattc
       61 ccccaatatt tccactttcc atttactgct atctggtagc caaatcgtaa attgggattt
      121 ttccctctca attttccaac ctttatctaa ataaaaaggt ggagaatgag ggtttaatgc
      181 attgactaaa gctgtaaata atagctgtgc ctgcttattt ggcattacaa agccatctgg
      241 ctcccaacct tttttagtaa gccatactct ggcaatagga gcacctaaag gatcagtttg
      301 aatccaacgc catttatttt cataaaattg aattagaagc aaactttgct ggccattatt
      361 ttcaacttta aaggatttta cagattcaac ctgtggcggt aattgcttaa tttgaggtaa
      421 tacagtacaa gcactaagca aaaaaataaa gcaaaaagat aataatctta acattcgtac
      481 ctaaagaaaa agaccgtaga gtattaacac tacggtcttt tgattctatt aaaaattaaa
      541 gtgatgcttg atcaaccgca acaccagcac ccattgtagt agagatgctt actttcttga
      601 tgaagatacc ttttgctgtt gttggttttg cttttgttaa agcagctaac aatgcgttta
      661 agttatcttt taattgttca gctgagaagt ctgctttacc gatagtagtg tggataatac
      721 cgtttttgtc gttacggtag cggatctgac cagatttcgc atttttaacc gcttctgcaa
      781 cgtttggtgt tactgtacct actttcgggt ttggcattaa gccgcgtgga cctaatactt
      841 gacctaattg acctacaaca cgcattgcat ctggagaagc gataacaaca tcaaagttca
      901 tttcgccttt cttgatttgc tctgcaagat cttccatacc cactaagtca gcacccgctg
      961 cttttgctgc ttctgcgttt gcaccttgtg taaacacagc aacacgagcg gtacggcctg
     1021 taccgtgtgg taatacggtt gcaccacgca cgttttggtc tgatttacga gaatcgatac
     1081 ctaagtttac agcaacgtcc acgctctcaa cgaatttagc ggttgcgaat ttttttaaca
     1141 cttcaactgc ttcgttgatg tcataagctt tagtagaatc tacgccagct ttaattgctt
     1201 tcattttttt agtcaattta gccattgtat tattcctcta cgattaagcc cattgagcga
     1261 gctgtaccag cgattgattt cattttggtt tcgatagtcg caccagtcat atctgctgct
     1321 ttagtttcag cgatttgacg gatttgctct tgagttactg tacccacttt atctttgttc
     1381 ggtttaccag aaccagattt gatacctacc gcttttttca gtagcactgc cgccggtgga
     1441 gttttggtaa cgaatgtgaa agatttatca gcgtaaactg tgataacaac cggaatcggt
     1501 aaacctttct ctaagctctc agtacgagcg ttgaatgctt tacagaattc cataatgtta
     1561 acaccttgtt gacctaatgc aggaccaacc ggtggtgatg ggttagccat acccgctgca
     1621 acttgcagtt taacgtaggc ttggactttt tttgccattt taattttcct ctaaatgggt
     1681 gataacgctg aaaatcagct cccctgttac ataaaaaata cgagtcagca ggctggctcg
     1741 taataggtcg caaattttaa agaatttgcg actatttttc aagcaaaact ttcgctttgt
     1801 tgaataaatc ttgttacaag cggtcttttt tccgctgaat tttgcaaaaa attgagaaaa
     1861 ataaccgctt gtgtgtgaaa ttaattgaaa ttagctctgc ttttccactt gactgaattc
     1921 taattctacc ggtgtcgcac gaccaaaaat cgacaccgat acttttaagc gacctttttc
     1981 gtaatccact tcttcgaccg taccggagaa atctgcaaac ggaccttctg taaccaaaat
     2041 gctttcgccc ggttggaatt cttttctgtg gcgtggtttt tccgctgttt cttgtacacg
     2101 gtttagaatg cggtctgctt cacgtttggt aattggtgcg gggcgatctg ccgtaccacc
     2161 aataaagccc attacacgag gcacactttt cactaaatgc caagtatcgt cattcatttc
     2221 catttcaacc aatacataac ctgggaagaa tttacgctcg gttttacggc gtttaccgcc
     2281 cacattttca acgacttctt cggttggcac taatacttca ccaaactgct cttccatttt
     2341 gtgaagctta atgtattcac gcaatgttac tgccacacgg ttttcaaagc ctgaaaacgc
     2401 ttgtaataca taccagcgtt ttgagccatt ttctttcact tctacttcac tcattttaga
     2461 accttaaact tgttacaaat gtaattaatg cgacgatgat tgagtcaata ccccataaaa
     2521 ccaaggaaac tactacgcac attgccaata caatcaaggt ggtttgtgtt gcttcagggc
     2581 gtgtcggcca gataattttg cgtagttcgg ttcgagactc tttaataaaa tgaattgcct
     2641 tttgcccctg atttgtaatt gccgctagtg caacagcacc aactagcaac accaccaata
     2701 aaagcactcg aacaattaat gaaaaatgag atgaaaaata ggcattacct accgcagcaa
     2761 ctgctaaaaa tacaatcgca accagccata atgctgtatt tgcacctttg cttttccccc
     2821 ctttttgttc gacttgctcg ggggtttttg ttttaatctc agtagccata tataacctaa
     2881 aaaatgaata aaaaaatcag aaattatttt aaagcgttaa attctatcat tttctacaag
     2941 acttgccacg atcttttata gatttttatg caaaatcaat attatgcggc gctatcacga
     3001 atcactagct tagtcggtaa tttaacaatc atctcttctg ctgataaggt tttaccactc
     3061 aaaagagtaa gtagttgttt acctgctatt tttcccattt gctcgtaagg gatcgcaatg
     3121 gttgtcaatt tagggtagga aatactcccc acttctaaac cacctaaacc ggcaatcgca
     3181 agatcttttg gaatgctcat atgtcggcgt aatgcttcat ataatgctcc gcaagccaat
     3241 tcatcggata aaaaaaccaa tgcatctatt gcttcccaat ttagaagggc ttcagtcaac
     3301 aaagttgctc ctgccgaaaa cgaaatatcc tctactacgt ggtggatttt taaaggagaa
     3361 atatgatgtg caaataaagt cgtatgccaa ctttctaaat attgtttgaa gatggataaa
     3421 tcttgcttcg ccgataacaa tccaatctct cgatagcctt ttttcaccaa aaaatggatc
     3481 attttctcca ttgcttcgtg gctatcaatt ccaacactga gatgaatcgg ttcttttttt
     3541 atcgcaccta tttctacggt agggatattg ctgtttttaa tccactcacg gacattagga
     3601 gggcaatcta aattcaaaaa cactatcgct tgaggagcat gattaatcag ttcttgaaac
     3661 caagattctt gatcagcgat caaaatcacc atttgcaatg cggaatccgc cacgcttttg
     3721 cgtaatgccg ataaaattaa ggtattttcc gttgagctaa tcgacgtcgt cacaatgacc
     3781 aaattatgtg attctgcaga agctaattgc cgagcagaaa aatgcggaat atatcctagt
     3841 tcaatgattg cctcttcaat ccgtttacgt agtggctccg acaccatttc tggtgtacgc
     3901 aaagcacgag ataccgtcat ctgcccaaca ccaacaactt tggctacatc agctaaagtg
     3961 actctgcccg aagatcttcg atttctactt gttccatttg ccatactatt ttcctaattg
     4021 ttccatatta tagggctaaa tccttaattt tcctatttag aaagaacaga gcaaaatgcc
     4081 aactgattat tttttatcta attaaatact aaaaatgtta acgc
//
LOCUS       DANLZD010000176         4090 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.177, whole genome shotgun sequence.
ACCESSION   DANLZD010000176 DANLZD010000000
VERSION     DANLZD010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4090)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4090)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4090
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.177"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(150..1508)
                     /locus_tag="PXE26_002362"
     CDS             complement(150..1508)
                     /locus_tag="PXE26_002362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDL5594902.1"
                     /translation="MANQQQERQSWSNRLAYIMTVAGATVGFGATWRFPYLVGEHGGG
                     AYVFLFCIAMIVIGIPMILVENVIGRRMRVNAIDAFAGFANGKKIASGWKILGYMGLL
                     GAFGILAYYMVLGGWVLNYIGSLLTGTLDLSQPVTVGTTQQFFQQSIFNSPMTIIAYT
                     ALFVLVNYFILVKGIVDGIERSVKYLMPILFIFLIVMVVRNITLPGAAEGIAFYLMPD
                     FSKITPKLFVFVLGQVFFALSLGFGVLITLSSYLDKSENLVKTATITGVMNTLIAVLA
                     GFMIFPSLFSFGVAPNSGPTLVFQSLPIVFSNMWGGTVFAVIFFSLLVVAALTTSLTI
                     YEVIITALQEKAKISRQKAIFITLATIFLLGNIPSALSDNILQDVQVMGKSIFDAFDY
                     ISGNILFILTALGSAIFVGFVLKEEAKEELGAGKMFTTIWFNYVRFVIPVIILVIFFN
                     SL"
     gene            complement(1578..2405)
                     /locus_tag="PXE26_002363"
     CDS             complement(1578..2405)
                     /locus_tag="PXE26_002363"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HDL5594903.1"
                     /translation="MNHPKHRAFLKWAGGKYRLIPDIQTHLPKKACLVEPFVGAGSVF
                     LNTDFERYILADINPDLINLFNVVKADVEEYIAQTKQLFLHPQANTEAFYKARRAEFN
                     RSKDIFRRSVIFLYLNRFGYNGLCRYNQKKGYNVPFGRYKTHYFPEKELRFFAEKAQK
                     ATFVCADFEQVFELAKNQLTDYVIYCDPPYAPLAQETNFTQYAGGGFSLEQQGRLATL
                     ALEMKGLGVPVLISNHDTDFTRRIYQSADITQIQVQRSIGQKVGSRVKVGELFALFI"
     gene            complement(2419..3507)
                     /gene="aroB"
                     /locus_tag="PXE26_002364"
     CDS             complement(2419..3507)
                     /gene="aroB"
                     /locus_tag="PXE26_002364"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HDL5594904.1"
                     /translation="MLQVNVELKERRYPIIIGAGLLNQPASYSPLKSGDKVMIVSNPT
                     VATHYLSVVTNALKELGCHVDSVLIPDGEEYKTLESLNLIFTALLEKNHNRDTTLIAL
                     GGGVIGDVAGYAAASYQRGIRFIQIPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQP
                     VSVIVDTNTLHTLSKREVSAGLAEVIKYGAIFDVTFFEWLEKHIDDLVSLKQDELEYC
                     IQRCCQLKADVVARDETEKGDRALLNLGHTFGHAIEARMGYGVWLHGEAVSVGMLEAA
                     ELSRILGDLSPQEVARLEKLLARANLPTISPDGMEPAEYLPYMWRDKKVLAGQLRLIL
                     LKSLGEAYVSSQATESQVLASIERFTQR"
     gene            complement(3531..4052)
                     /gene="aroK"
                     /locus_tag="PXE26_002365"
     CDS             complement(3531..4052)
                     /gene="aroK"
                     /locus_tag="PXE26_002365"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroK"
                     /protein_id="HDL5594905.1"
                     /translation="MAEKRNIFLIGPMGAGKSTIGRQLAQTLGMEFMDSDSVIEERAG
                     ADIDWIFDVEGEEGFRKREERILNELTQNYGIVLSTGGGSILSKDNRNVLSARGIVIY
                     LETTVDKQFERTQRDKKRPLLQTEDPRKTLEELAKIRNPLYEEIADITIHTDEQSAKV
                     VANQIIDMIDNLQ"
BASE COUNT         1328 a          928 c          679 g         1155 t
ORIGIN      
        1 tcattttaga atgctattat cctgactgtt cttattcccc cccaatatgc ttggttaatt
       61 aagcaagaat tgcaaattcc ccacaaaatt taaccgcttg tcactaaaaa taaagctgtt
      121 tgaaaatcca ttcaaacagc ttatagaatt tagagtgaat taaagaaaat caccaagata
      181 atcaccggaa tcacaaagcg aacatagtta aaccaaatag tggtaaacat tttacccgca
      241 cctaattcct ccttcgcctc ttcttttaga acaaagccaa cgaaaatcgc gctacctaag
      301 gcggttaaaa taaacagaat attgccacta atataatcga aggcatcaaa aatgctcttg
      361 cccataacct gcacatcttg caatatattg tcacttaatg ctgatggaat attacccaac
      421 agaaaaatag tagccaaagt aataaaaata gctttttgac ggctaatctt tgccttctct
      481 tgcaatgcag tgataataac ttcataaata gttaacgagg ttgttaatgc cgccaccact
      541 aatagactaa aaaagataac cgcaaaaact gttccccccc acatatttga gaacacaatc
      601 ggcaaacttt ggaatactaa agtcggacct gaatttggag caacgccaaa gctaaataat
      661 gacggaaaaa tcataaaacc ggcaagtacc gcaattaagg tgttcatcac cccagtaatt
      721 gttgctgttt ttactaaatt ctcgctctta tcaaggtagc ttgaaagggt tatcaacaca
      781 ccaaaaccaa ggcttaatgc aaaaaatact tgacccagca caaacacaaa caattttggt
      841 gtgatttttg aaaaatcggg catcagataa aaggcaatgc cttcagcagc ccccggtaag
      901 gtaatatttc gaaccaccat cacaatcagg aaaataaaca gaatcggcat caaatatttc
      961 actgaacgct caataccgtc cacaatgcct tttaccaaaa taaaataatt caccaataca
     1021 aaaagtgccg tataagcaat aattgtcatt gggctattaa aaatactttg ttggaagaat
     1081 tgttgggtcg tgccaacggt aacaggttga gacagatcta gtgtccccgt gagtaagcta
     1141 ccgatataat ttaataccca accaccaagt accatatagt aggcaagaat accaaatgct
     1201 ccaagcaagc ccatatagcc aagaattttc caacctgagg caattttttt accattagca
     1261 aaaccggcaa aagcatcaat agcattcact ctcattcggc gaccaattac attctccact
     1321 aatatcatag ggataccaat tacgatcatc gcaatacaaa ataaaaacac ataagcaccg
     1381 cctccgtgtt cccccacaag ataagggaaa cgccaagttg caccaaaacc gactgttgca
     1441 ccagcaacgg tcataatata cgccaatcgg ttagaccaag attggcgttc ttgttgttga
     1501 tttgccattt aatactccat cggctaacaa taccgcttca accaacaagc ggtcagattt
     1561 ttagaaaata ttacaaatta aatgaagagt gcgaataact cgccaacttt aacccttgag
     1621 cccaccttct gccctattga acgctgtacc tgaatttggg taatatcggc agattgataa
     1681 atcctacggg taaaatcagt atcgtgattt gaaattaata cgggaacgcc taatcctttc
     1741 atttctaaag ccagtgttgc caaacgccct tgttgctcta ggctaaaacc accgccagca
     1801 tattgcgtaa aattcgtttc ttgtgctaaa ggagcgtaag gtgggtcgca gtaaatcaca
     1861 taatccgtta attgattttt tgccaactca aagacctgtt caaaatccgc acacacaaaa
     1921 gttgcctttt gtgctttttc agcaaaaaaa cgtagttctt tttctggaaa ataatgggtt
     1981 ttataacgcc caaagggaac attgtaccct tttttctggt tataacggca aagtccgtta
     2041 tagccaaatc gatttaaata caaaaaaatc accgagcgac gaaaaatatc ttttgagcga
     2101 ttaaactccg cacggcgtgc tttataaaag gcttctgtat tcgcttgtgg gtgaagaaac
     2161 agttgctttg tttgcgcaat atattcctca acatctgctt tcaccacgtt gaaaagatta
     2221 atcaagtcag gattaatatc agcaagaata taacgttcaa aatctgtatt cagaaagacc
     2281 gaacctgcac caacaaaagg ctcgactaaa caagcctttt ttggcaaatg ggtttgaata
     2341 tctggaatta agcgatattt accgccagcc cattttaaaa aggctcgatg cttagggtga
     2401 ttcatttcat tttaaacatt aacgttgggt aaaacgctca atagaggcta atacttgaga
     2461 ttctgtggct tgcgatgaaa cgtaagcttc accaagtgat ttcaataaaa ttaggcgtaa
     2521 ttgacctgcc agtacttttt tatctcgcca catataaggt agatattctg ccggttccat
     2581 tccatcaggt gaaattgttg gcaaattggc tcgggccaat aatttttcca agcgagcaac
     2641 ctcttgagga cttaaatccc ccagaatacg agataattcc gcagcctcta gcataccaac
     2701 cgaaacagcc tctccgtgta accatacacc atagcccata cgtgcttcaa tggcgtgacc
     2761 aaaggtatgt cctaagttta gtaatgcacg atctcctttt tccgtttcat ctcgagcaac
     2821 cacgtcagct tttagctggc aacaacgctg aatacaatat tccagctcat cttgcttgag
     2881 actgaccaaa tcatcaatat gcttttcaag ccattcaaaa aaagtaacat caaagattgc
     2941 accgtatttg atgacttccg ccaaaccagc actgacttct cttttggata aggtatggag
     3001 cgtattggta tcaacaatca cagaaacagg ctgataaaaa gccccaatca tatttttacc
     3061 gagtgggtgg tttactgccg ttttcccgcc tactgaagaa tcaacttgag ccagtaaagt
     3121 ggtcggaatt tgtataaaac gaataccacg ttggtaagag gcagctgcat agcctgcaac
     3181 atcaccgatt acaccaccgc ctaaagcaat taaagtggta tcgcgattat gatttttttc
     3241 taataatgcg gtaaaaatca aatttaatga ttctagcgtt ttatattctt caccgtcggg
     3301 aatcaatacc gaatcaacgt ggcaacccag ctcctttaac gcatttgtta ccacactaag
     3361 ataatgtgtc gccaccgttg gatttgagac aatcatcacc ttatctccag attttaatgg
     3421 gctataacta gcaggctgat ttaataaccc tgcaccaatt ataatcgggt aacgacgctc
     3481 ttttaattcc acattgactt gtaacatatc ttagctcctt tcttacctgg ctactgtaaa
     3541 ttatcaatca tatcaataat ttgatttgcc actactttag cgctctgctc gtccgtatga
     3601 atagtaatat ctgcaatttc ttcatacaat gggttacgga ttttcgctaa ctcttccaac
     3661 gttttacggg ggtcttctgt ttgcaataaa gggcgttttt tatctcgctg agtacgttca
     3721 aactgtttat ccactgtcgt ttctaaataa ataacgatac cacgagccga taacacatta
     3781 cggttatctt tagataaaat cgaaccaccg ccagttgaaa gcacgatacc ataattttgc
     3841 gtcagttcat ttagaatacg ttcttcacgc ttacggaaac cctcttcacc ttcaacatcg
     3901 aagatccaat caatatccgc acctgctcgt tcttcgatca cactgtcgga atccataaat
     3961 tccataccta atgtttgagc aagctgacga ccaatcgtac ttttacctgc tcccatcggc
     4021 ccaatcaaaa aaatattacg tttttcagcc attatttctt cttcatttta aaatttacta
     4081 aacatttgat
//
LOCUS       DANLZD010000177         4057 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.178, whole genome shotgun sequence.
ACCESSION   DANLZD010000177 DANLZD010000000
VERSION     DANLZD010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4057)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4057)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4057
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.178"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            76..717
                     /gene="sodA"
                     /locus_tag="PXE26_002366"
     CDS             76..717
                     /gene="sodA"
                     /locus_tag="PXE26_002366"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Mn]"
                     /protein_id="HDL5594906.1"
                     /translation="MAYTLPELGYAYDALEPHFDAKTMEIHHSKHHQAYINNANAALE
                     AHPELLEKCPGALIKDLSQVPAEKRIAVRNNVGGHVNHTLFWKGLKTGTTLQGALKEA
                     IERDFGSVEAFQSEFEKAATTRVGSGWAWLVLEEGKLAVVSTANQDNPLMGKEVAGVS
                     GYPILVLDVWEHAYYLNYQNRRPDFIKAFWNVVNWDEAARRFEEKVATCGCAK"
     gene            complement(780..1904)
                     /gene="alr"
                     /locus_tag="PXE26_002367"
     CDS             complement(780..1904)
                     /gene="alr"
                     /locus_tag="PXE26_002367"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDL5594907.1"
                     /translation="MKPATATIDSQALRHNIRLIKSFAPQQKLLAMIKANAYGQGLLP
                     AAGTLADMVDGFGVARLREALEIQETGYTGKIVLVEGFFDREELLKTLSRKFDTVIHN
                     LEQLELLEQVAKEWQAEQQKGFWTRKAKIYFPINIWLKIDTGMHRLGIHPEQVDHFVE
                     RLKNCALVNSISFVSHFSRADELDCGYTEKQIAVFEQATQKYQDHDRSISASSGILYW
                     KQAHYDWVRPGIIMHGISPHYTPITDLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWV
                     SPKDTKLGVTAMGYGDGYPRNAPEGTPVLINGRIVPIVGRVSMDMLTVDLGAESQDKV
                     GDKAIFWGEQLLIEDVAKHIGVISYELITKLTPRVIFEYK"
     gene            2034..3995
                     /gene="recD"
                     /locus_tag="PXE26_002368"
     CDS             2034..3995
                     /gene="recD"
                     /locus_tag="PXE26_002368"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HDL5594908.1"
                     /translation="MLNLLLELKQEKAISDLNYQFARFIDNKQKPYGYSPLEQDLAVL
                     AAALVSYQVGLGHTALRLENLSLSSLFELNSKPQTYHLLEQILQKIEQIPPLEWQSVL
                     KNHIAFSYSPETIKPMLFQNSLLYFYRYWQAEHRIAGYLQQAVDFSEKFANTELNQSI
                     LNQLFTGKAQTIDWQKIAVATALEKQFSLISGGPGTGKTTTVVKLLLGLQLKQQALQK
                     PYLQIALAAPTGKAAARMKESLESKLAEEKGLSEELKRSIPTEAVTIHRLLGARPLTE
                     KTKYHTKNPWHYDLVVLDEASMIDLSMMEKVVQALKPNSRLIMLGDKDQLASVEAGSI
                     MGELGSFIDNGYSQSHCDYLKAVTDYQIEAGNALPIGDCLSHLKHSYRFGEKAWIGEL
                     ANAVNDQKINLSWEIFDKYKNSDKLENFCYPETKETTDKSSWIEKSVQMVVDKAVELY
                     RDYLQAVQKREKNPDSVSVKAIFEKFQKVRILSALRVSELGVERLNMAIAEGLRKASL
                     VKFNHSRDRYIGKPILMTENMPINSIASGDVGIILPDENGESRVYFDSLQENREHHSL
                     PLGRVSNYEAAYIMTVHKSQGSEFEHTVLVLPHSISPVLTKELIYTAITRAKDKFTLF
                     GSEKVWKYSVGAKTERQSGLKEQIRGKFS"
BASE COUNT         1267 a          783 c          873 g         1134 t
ORIGIN      
        1 tttgtgtgtt tcttgataaa atgtactcgg agtttaactc tgattaacct atttactatt
       61 tgagaggaat taactatggc atatacatta ccagaattag gctacgctta tgatgcgtta
      121 gagccacatt tcgatgctaa aacaatggaa atccaccatt ctaaacatca ccaagcttac
      181 atcaacaatg caaatgcagc attagaagct caccctgaat tattagaaaa atgtccgggt
      241 gcattaatca aagatttgag ccaagtgcct gcagaaaaac gtattgcagt gcgtaacaac
      301 gtaggtggtc atgtaaacca cactttattc tggaaaggtt taaaaacagg cactacctta
      361 caaggtgcat taaaagaagc gattgagcgt gatttcggtt cagttgaagc tttccaatca
      421 gaatttgaaa aagcagcgac tactcgtgtt ggttcaggct gggcgtggtt agtattagaa
      481 gagggtaaat tagccgttgt ttcaaccgct aaccaggaca acccactaat gggtaaagaa
      541 gtggcaggcg tttcaggcta tccgatttta gtcttagacg tttgggaaca cgcttactac
      601 ttaaactacc aaaaccgccg tccggatttc attaaagcat tctggaacgt tgtaaactgg
      661 gacgaagccg ctcgccgttt tgaagaaaaa gtagcaacct gcggttgtgc gaaataatat
      721 tttcgatctt gaataagata caagcggtaa aatttgttga aaattttacc gcttgttgtc
      781 tatttatatt caaaaatcac acgaggagtg agtttagtaa tcagctcata gctaatcacg
      841 ccaatgtgtt tcgccacatc ttcaattaat agttgctctc cccaaaaaat ggctttatcg
      901 cccactttat cttggctctc tgcacctaaa tcgaccgtca gcatatccat cgaaactcga
      961 ccgacaatcg gcactattct accgttaatc aacacagggg taccttcagg agcattgcga
     1021 gggtagccat cgccgtagcc cattgcagtc acgccgagtt tggtatcttt agggcttacc
     1081 caagcaccac catagcctac aggctcgccg gctttatggg tacgcacagc gatcagggaa
     1141 gaggagagcg tcattaccgg cttaaaacct aaatcggtaa tcggcgtata gtggggagaa
     1201 atgccgtgca taataatacc cgggcgaacc caatcataat gagcctgttt ccaataaaga
     1261 ataccgcttg aggcggaaat actgcggtcg tgatcctgat atttttgcgt agcttgctca
     1321 aacaccgcaa tttgtttttc ggtatagcca caatcgagtt catcggcacg gctaaaatga
     1381 ctcacaaagc tgattgaatt gaccaaggca caatttttca aacgttcaac aaagtgatcg
     1441 acttgctccg ggtgaatgcc taagcggtgc attccggtgt cgatttttag ccaaatgtta
     1501 atcgggaagt agattttcgc tttacgagtc caaaagcctt tttgttgctc tgcctgccat
     1561 tcttttgcta cttgctcgag taattccagt tgttcgaggt tatgaatgac ggtatcaaac
     1621 ttgcgggaaa gggttttgag tagctcttct cggtcaaaaa aaccttcaac taacacaatt
     1681 ttgcctgtgt atccggtttc ttgaatttct aaggcttcac gcaaacgggc aactccaaag
     1741 ccatcaacca tatctgctaa tgtgccggca gccggcaata agccttgccc gtaagcattg
     1801 gctttgatca tcgccaataa tttttgctgt ggagcgaaag atttgatcag gcgaatatta
     1861 tggcggaggg cttgactatc aatggttgct gttgctggtt tcatacttat ctacatagtt
     1921 aaaatcacaa gaaaggctaa attatacgcc taaaataaaa aatcccttag aaaataatgc
     1981 aaaaaagatt agtattatca cttaatgtta ggtggtcgat ttaaggtttg attatgctga
     2041 atttattatt ggaacttaaa caagaaaagg cgatttctga cttaaattat caatttgccc
     2101 gttttattga taataagcag aaaccctatg ggtattcgcc tttggagcaa gatttagctg
     2161 tgttagccgc tgcgttggtt tcttaccaag tgggacttgg gcatacggca ttacgtttgg
     2221 aaaatctcag tctttcttct ctttttgaat taaatagcaa gccacaaact tatcatttgc
     2281 tcgaacaaat tttgcaaaaa attgagcaaa ttccaccgct tgaatggcag agtgtgctga
     2341 aaaatcatat cgcttttagc tattctcccg aaacaattaa accgatgtta ttccaaaaca
     2401 gcttgctcta tttttatcgc tactggcaag cggagcatcg cattgccggt tatttacaac
     2461 aagcggttga tttttcggaa aaatttgcaa ataccgaatt aaaccaaagc attctcaacc
     2521 aactattcac tgggaaagct caaactatcg actggcaaaa gattgccgtt gcaacagcat
     2581 tagaaaagca gtttagctta atttcaggtg ggccgggaac cggaaaaaca actacggtag
     2641 taaaattatt actcgggctg caattaaaac agcaagcact acagaaacca tatttgcaaa
     2701 tcgctctggc tgcaccaacc ggaaaagcag cagcaagaat gaaagagtcg ctggaaagca
     2761 agttggcgga agaaaagggg ttatctgagg agttaaaacg ctctattcca actgaagcag
     2821 tgactattca tcgcttgctt ggtgcgagac cattaactga gaaaaccaaa tatcatacca
     2881 aaaatccgtg gcactatgat ttggtcgtat tagatgaggc ttcaatgatt gatttatcaa
     2941 tgatggagaa agttgttcaa gcgctcaaac caaactctcg cttgataatg ctgggagata
     3001 aagatcagct tgcttctgtg gaagctggtt caattatggg ggaacttggc tcttttattg
     3061 ataatggtta tagccaatcc cattgcgatt acttaaaagc cgttaccgac taccaaattg
     3121 aagccggtaa tgcgttgccg attggtgatt gtttatctca cttaaaacat agctatcgat
     3181 ttggcgaaaa agcctggatt ggagagcttg caaatgcagt aaatgatcaa aaaattaacc
     3241 tttcgtggga gattttcgac aaatataaaa acagtgataa gttagaaaat ttctgttatc
     3301 cggaaacgaa agagacaacg gataaatcaa gctggattga aaaaagtgtg caaatggtgg
     3361 tggataaagc ggttgaactt tatcgtgatt atttacaagc ggttcaaaaa cgggagaaaa
     3421 atccagattc agtgagtgtg aaagcgattt ttgagaaatt tcaaaaagtc cgaattttat
     3481 cagccttaag ggtaagtgaa ctgggggttg aacgtcttaa tatggcgatt gcggaaggct
     3541 tgcggaaagc tagcttagtg aaatttaatc atagccgaga ccgctatatc ggaaaaccga
     3601 ttttaatgac agaaaatatg ccgataaata gcatagccag cggtgatgtc ggcatcattt
     3661 tgccggacga aaatggagaa agccgagttt attttgattc cttacaggaa aatagagaac
     3721 accatagttt gcctctaggt agggtttcaa attatgaagc agcttatatt atgactgtgc
     3781 ataaatcgca aggttctgaa tttgaacata cggtattggt gttgccccat tcgatttccc
     3841 cggtgctgac gaaagagttg atttacaccg caatcacaag ggcaaaagat aaatttacct
     3901 tatttggtag cgaaaaagtt tggaaataca gtgttggtgc caaaaccgaa agacaaagtg
     3961 ggctaaaaga acaaataaga ggcaagttta gctaaattaa tactcgtttt gccgtaaaaa
     4021 tacgcaagcg gtcatttttt tcaaattttt tacaaaa
//
LOCUS       DANLZD010000178         4009 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.179, whole genome shotgun sequence.
ACCESSION   DANLZD010000178 DANLZD010000000
VERSION     DANLZD010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4009
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.179"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(112..1752)
                     /gene="pgi"
                     /locus_tag="PXE26_002369"
     CDS             complement(112..1752)
                     /gene="pgi"
                     /locus_tag="PXE26_002369"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013527751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HDL5594909.1"
                     /translation="MQKINPVQTFAWNALEQHKADNLSIPQLFAEDPNRFDKYSLRFE
                     DQLLVDFSKNAINEKTLTLLRQLANECGLESAKNAMFSGKKINRTENRAVLHVALRNR
                     ANTPIAVDGKDVMPEVNAVLAKMKDFCERVISGEWKGYTGKTITDVINIGIGGSDLGP
                     YMVTEALRPYKNHLNMHFVSNVDGTHIAEVLRKVNPETTLVLVASKTFTTQETMTNAL
                     SARKWLLDSAKDESAVAKHFVALSTNAKEVEKFGIDTANMFEFWDWVGGRYSLWSAIG
                     LSIALSLGFENFEQLLAGAHAMDKHFLITPIEKNIPTTLALVGIWNNNFLGAESEAIL
                     PYDQYMHRFAAYFQQGNMESNGKFVGRDGKPVTHQTGPIIWGEPGTNGQHAFYQLIHQ
                     GTKLIPCDFIAPAQTHNPLSDHHNKLLSNFFAQTEALAFGKSKETVEKEFLDAGKTLE
                     EVAEIVPFKVFSGNKPTNSILVQKITPYSLGALIAMYEHKIFVQGVLFNIYSFDQWGV
                     ELGKQLANRILPELETDEKINSHDSSTNGLINQFKAWR"
     gene            complement(1785..2033)
                     /locus_tag="PXE26_002370"
     CDS             complement(1785..2033)
                     /locus_tag="PXE26_002370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HDL5594910.1"
                     /translation="MLTPKNLEAIAQQLHNALPQSLKNVGNDLDEKFKQILQAQLARL
                     DVVTREEFDVQSQVLLRTREKLTELEKRLDELTQRTDE"
     regulatory      2157..2201
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00522"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="PreQ1 riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF00522"
     gene            2205..2873
                     /gene="queC"
                     /locus_tag="PXE26_002371"
     CDS             2205..2873
                     /gene="queC"
                     /locus_tag="PXE26_002371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HDL5594911.1"
                     /translation="MTHQKPKAVVIFSGGQDSTTCLFQAIAEFGKENVEVVTFQYGQR
                     HSIELEKARWISNDLGVKQTLIDTSVIKAITTNALMDNNAEIQQQGSTPNTFVDGRNA
                     LFLLYTAIYAKGQGIQTIFTGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYNFNIRTP
                     LMYLTKKETWALADKLGAFDYIRDHTHTCYLGVEGGCHDCPSCVLREKGLNEYLAERE
                     VSNV"
     gene            2866..3288
                     /gene="queD"
                     /locus_tag="PXE26_002372"
     CDS             2866..3288
                     /gene="queD"
                     /locus_tag="PXE26_002372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HDL5594912.1"
                     /translation="MFKIAKEFSFDMAHMLDGHDGKCQNLHGHTYKLQVEVAGELFQE
                     GAKRGMVMDYSDLKAVVKQHILEPMDHAFIYDLQSERESQVAQLLIDLNSKVYGIPTR
                     TTAEEMAKYMFEKLEKVGLPVSLIRLWETPTSYCEYSK"
     gene            3288..3914
                     /locus_tag="PXE26_002373"
     CDS             3288..3914
                     /locus_tag="PXE26_002373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HDL5594913.1"
                     /translation="MAELISNPRFPIVEIFESLQGEGFNTGMPAIFVRFGKCNLTCPW
                     CDTNYNQFEQWTLSDILAKVRSYSAKNVIITGGEPTIQPNLSLLLEQFKKEGYFLAIE
                     TNGLKEVPAQIDYIATSPKRMYQEKYQRRCIEFANEVRIVVDGEVQGFCEQIESQIKA
                     EHYYLSPCEVEGKMNLLETITQIGLLNQRPNKPKWQLSIQTHKIVGIE"
BASE COUNT         1201 a          748 c          852 g         1208 t
ORIGIN      
        1 tagaaaaaac tgcttgtgta gaaatggcgc ttagttcagt cctcagctaa aattttagaa
       61 aaaaagcata gagatttttt acctctatgc tttttattgt attgactata tttaacgcca
      121 agccttgaat tggttaatta aaccatttgt ggagctgtcg tggctgttga ttttttcatc
      181 ggtttcgagt tcgggtaaaa tgcggtttgc aagctgtttg cctaactcca cgccccattg
      241 gtcgaaactg taaatgttga acagcacgcc ttgcacgaag attttgtgtt catacattgc
      301 aattaatgcc cctaagctgt acggggtgat tttttgcacc aagatagagt tggtcggttt
      361 gtttccgctg aacactttaa acggcacgat ttcagctact tcttccaacg ttttacctgc
      421 atctaaaaac tctttttcaa ctgtttcttt tgatttaccg aaagctagtg cttcagtttg
      481 agcaaagaag ttagaaagca gtttgttgtg atgatcgctt aacggattgt gagtttgtgc
      541 cggtgcgata aaatcacaag gaattaattt tgtgccttga tgaatgagtt gatagaatgc
      601 gtgctgaccg ttagttcccg gttcgcccca aataatcgga cctgtttggt gagtaaccgg
      661 tttgccgtca cgccccacaa atttaccgtt tgattccata ttgccttgtt ggaaataagc
      721 cgcaaagcgg tgcatatatt ggtcgtaagg taaaatcgct tctgattcag cacctaagaa
      781 attgttattc caaatgccga ctaaagctaa cgtagttgga atgtttttct caatcggcgt
      841 gattaagaaa tgcttatcca ttgcgtgagc accagcaagt agctgctcga agttctcaaa
      901 acctaatgaa agggcaatcg aaagcccgat ggcagaccat aatgagtaac gaccgccaac
      961 ccaatcccag aattcaaaca tattagcggt atcaataccg aatttttcca cttctttggc
     1021 attggttgaa agtgccacga aatgttttgc taccgcagat tcatctttgg cagaatcaag
     1081 tagccatttg cgagctgaaa gggcattggt catcgtttct tgagtggtaa aggtttttga
     1141 agccactaac actaacgtgg tttcaggatt aactttacgc aacacttcag caatatgcgt
     1201 gccgtccacg ttagacacaa agtgcatatt aaggtgattt ttataagggc gtaatgcctc
     1261 tgttaccata taaggaccta gatccgagcc accaataccg atattgatca catcagtaat
     1321 cgttttgccg gtatagcctt tccattcgcc ggaaataaca cgctcgcaga aatctttcat
     1381 tttcgctaac acggcattca cttccggcat tacatctttg ccatcgactg cgattggtgt
     1441 attggcacgg ttacgcagtg caacgtgcaa tacggcacgg ttttcagtgc ggttgatttt
     1501 tttgccggag aacatcgcat tttttgctga ttccaaacca cattcatttg ccagttggcg
     1561 aagtaaggtt aaggtttttt cgttgatcgc attttttgaa aaatcgacta ataattgatc
     1621 ttcaaaacgg agggaatatt tgtcgaaacg gtttggatct tcggcaaaaa gttgaggaat
     1681 agaaaggttg tctgctttat gttgctctaa ggcattccaa gcaaaagttt gcacagggtt
     1741 aattttttgc atctgagttt ccttatacta aattaaaaaa tcgattattc atctgttctt
     1801 tgagtcagtt catcaagacg tttttctaat tcggttaatt tttcacgagt gcggagtaac
     1861 acttgagatt gaacatcaaa ttcttcacga gtgacaacat caagacgggc taattgggct
     1921 tgaaggattt gcttaaattt ttcatctaga tcattaccga cattttttaa gctttgcggt
     1981 aaggcgttat ggagttgttg agcaatcgct tctaagttct tcggcgtgag catatttaaa
     2041 ttccttacta taaatgagta tcccaatttt attgaatttt gggtttaaga gaaagcaaat
     2101 tctttgtaaa atatcacctt tcgcaaaata caagcaaaaa agaccgcttg tattttttat
     2161 ttgtggttcg taaacctccc acacaaaaaa actaaggaca caaaatgact catcaaaaac
     2221 caaaagccgt tgtgattttt tccggcggtc aagactctac cacttgttta ttccaagcta
     2281 ttgctgaatt tggcaaagaa aatgtggaag tcgttacctt tcaatatggg caacgccatt
     2341 cgattgaact tgaaaaagca cgctggattt ctaacgattt aggcgtcaaa caaacgctga
     2401 ttgatacttc ggtgattaaa gcgattacta ccaatgcgtt aatggataat aatgctgaaa
     2461 ttcaacaaca aggcagcaca cccaatacct ttgtggatgg gcgtaatgcc ttatttctgc
     2521 tttataccgc catttatgcc aaagggcagg gcattcaaac tatttttacc ggcgtgtgtg
     2581 agaccgattt tagtggttac cctgattgcc gagatgtatt tgtaaaatca atgaatgtaa
     2641 cgctaaattt agcgatggac tataatttca acattcgcac gccattgatg tatttaacta
     2701 aaaaagaaac ttgggcatta gcagataagc tgggtgcttt tgattatatt cgagaccata
     2761 cccacacctg ttatttaggc gttgaaggtg gttgccacga ctgcccgagt tgcgtattgc
     2821 gagaaaaagg cttgaatgaa tatttagcag aaagggaggt aagcaatgtt taaaattgct
     2881 aaagaattta gttttgatat ggctcatatg ctagatggac acgatggcaa atgccaaaac
     2941 ttacacggac acacctacaa attgcaagtt gaggtggcag gtgagctatt tcaagaggga
     3001 gctaaaagag gaatggtaat ggactattcg gatctaaaag cagtggtaaa acaacatatt
     3061 ttagagccga tggatcacgc ttttatttac gacttacaga gtgagcgtga aagccaagta
     3121 gcacaattat taattgattt aaactccaag gtttatggta tcccaactcg taccacagcc
     3181 gaagaaatgg cgaaatatat gtttgaaaaa ttagagaaag tgggcttacc ggttagccta
     3241 attcgcttgt gggaaacgcc tacttcttat tgtgagtaca gcaaataatg gcggagttaa
     3301 tttcaaaccc tcgttttccg attgttgaga tctttgaaag cttacaaggg gaaggcttta
     3361 ataccggaat gccggctatt tttgtacgtt ttggcaaatg caacctcact tgcccgtggt
     3421 gcgataccaa ttacaatcaa tttgagcaat ggacgttaag cgatattctt gccaaagtaa
     3481 gaagctattc tgcgaaaaat gtgattatta ccggaggcga gccaacgatt cagcctaatt
     3541 tatcgttatt attagaacaa tttaaaaaag agggatattt tttagcgatc gaaaccaacg
     3601 gcttaaaaga ggttccggca caaattgatt atattgcgac cagcccaaag cgaatgtacc
     3661 aagaaaagta tcaacgccgt tgcattgaat ttgcgaatga agtccgtatc gtcgttgatg
     3721 gagaagtaca gggtttctgt gagcaaatag aaagccaaat taaagctgag cattactatc
     3781 tttcaccttg tgaggtagag ggaaaaatga acttgctgga aaccatcacc cagattgggt
     3841 tattaaatca gcgtccaaat aagcctaaat ggcagctaag tatccaaacg cataaaattg
     3901 tggggattga ataagtagaa gttagaagat gatttgtaaa agatcagact tgatctgaca
     3961 attcactcta aaaagtgaga gtttcccgtt tagaatatga gtgtccaaa
//
LOCUS       DANLZD010000179         4006 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.180, whole genome shotgun sequence.
ACCESSION   DANLZD010000179 DANLZD010000000
VERSION     DANLZD010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4006)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4006)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4006
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.180"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..1553)
                     /locus_tag="PXE26_002374"
     CDS             complement(<1..1553)
                     /locus_tag="PXE26_002374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5594914.1"
                     /translation="MKKKQQYRKSTINNTNASQQNSGEVLNSVNYQTLLEDYLNKISF
                     SNRQFIDELKTEHNKKLKELENKVSSLEQTNHVQQQDISRLNILLEQKNIEENRNLER
                     MISYQLGYALINACKSFSGFISLPSELLKIRKLAKDKKQQKLLPSSPVANTPKQQTAL
                     VTSAPARSQSIDLTRGLTLLDPISELCWADAFTGYPLVRKSYADHIAGSTCKFAFFES
                     AWQANKGSWIYAFTSPGLKHNNAQALLDAIQKLKDKSIPIIFWNKEDPMHYEMFKPIA
                     EKVDYVFTTDQLVVDKYKKELGHSNIWALPFAAPIKVTNPIGRFSLDTETVCFAGTYY
                     AQNHENRKKQMDMLLPALLAYNGCIYDRASKDTSGKYAYPEQYTHLIREGVNFNEIVK
                     LYKKFKVFLNVNTITQSTTMMSRRVYELLASGTPVVSTPSKAITAQFPGIVITVNNEK
                     EAELAVHKLLTDSYYWHKQSMLGIREVMSKHTYENRWEFACSVINNEPIKEKTPSVRI
                     IAVYHNYLD"
     gene            complement(1557..2828)
                     /gene="wecC"
                     /locus_tag="PXE26_002375"
     CDS             complement(1557..2828)
                     /gene="wecC"
                     /locus_tag="PXE26_002375"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HDL5594915.1"
                     /translation="MSNFNTISVVGLGYIGLPTATVFAQHGLNVIGVDVNQHAVDHIN
                     QGKIHIVEPDLDVAVHQCVSSGKLKATLTPEPAEAFLIAVPTPFKGEDYEPDLSYIQA
                     ACKAIAPVLEKGNLVILESTSPVGATEQMAEWLAEYRPELSFPQQAGEDSDIRIAHCP
                     ERVLPGQVMHELIENDRIVGGMTNKCSVQAVNLYKTFVKGDCIVTNARTAEMCKLTEN
                     SFRDVNIAFANELSIICDRLDINVWELIALANRHPRVNILQPGCGVGGHCIAVDPWFI
                     VNKTPDLAKIIRTAREVNDHKPEWVISKMNEAVIYALQKTGKSIDQIKIACLGLAFKP
                     DIDDLRESPALKITEKLAEKYPNQVFAVEPNVEELPKKLANKNISLISVDEALEVADV
                     VVVLVDHSEFKLVKPVFLNDICVVDTKGIWR"
     gene            complement(2843..3958)
                     /gene="wecB"
                     /locus_tag="PXE26_002376"
     CDS             complement(2843..3958)
                     /gene="wecB"
                     /locus_tag="PXE26_002376"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015703970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HDL5594916.1"
                     /translation="MRYLIVFGTRPEAIKMAPLVEGFKKSGLNFKVCVTAQHRQMLDQ
                     VLELFEITPDYDLDIMSNKQTLSTVTSAILEKIQPVIAEYKPTTIFVHGDTATTLASS
                     LAAYYNQIDIAHIEAGLRTHNIYSPWPEEGNRKLTAALAKYHFAPTQSTKKNLLNENI
                     AEGTIYVTGNTVIDALFLACKKLDENIDLLSSLQEKFSYIKSKRTILITGHRRENFGN
                     GFENICKAVSTLASDFPDVQFIYPVHLNPNVREPVNRLLADKSNVHLIEPCDYLSFVY
                     LMRESYLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVEAGTVKLVGTAQSEIIKQV
                     TELLNDQAAYTKMSEAHNPYGDGTAVKQILSVFQSKQ"
BASE COUNT         1189 a          758 c          721 g         1338 t
ORIGIN      
        1 aaatctagat aattatgata aaccgcgata attcgaacac taggtgtttt ttcctttatt
       61 ggttcattat tgattacact acacgcaaat tcccaacgat tttcataagt atgttttgac
      121 attacttcac gtatgcccag catggactgc ttatgccaat aatagctatc tgtcagtaat
      181 ttatggacag caagctcagc ttctttctca ttatttacag taataacaat gccagggaat
      241 tgtgccgtaa tagctttaga tggcgtagat acaacaggtg tgccgctagc tagaagttca
      301 tacacacgtc ttgacatcat tgtggttgat tgagtgatgg tattaacatt taaaaatact
      361 ttaaatttct tatacaactt aactatctca ttgaaattta ccccttctcg gataagatga
      421 gtgtattgtt caggataagc atatttgcca cttgtatctt tagatgctct atcataaata
      481 cagccgttgt aagccaataa tgcaggtaac aacatatcca tctgtttttt acgattttca
      541 tgattttgag cataatatgt tccagcaaaa caaactgttt ctgtatcaag agaaaatctg
      601 ccaattggat tggttacttt aattggggca gcaaaaggca aagcccaaat atttgaatgc
      661 ccaagttctt ttttatattt atctacaacc aattgatctg ttgtaaaaac ataatctact
      721 ttttctgcga ttggcttaaa catctcataa tgcattggat cttctttatt ccaaaaaatg
      781 ataggaatgc ttttatcttt tagtttctga attgcatcta acaatgcttg agcattatta
      841 tgttttaagc ctggtgaagt aaaagcatag atccatgacc ctttatttgc ctgccaagca
      901 ctttcaaaaa aagcaaattt acacgtgctg ccagcaatat gatcagcata agattttcta
      961 actaaaggat accctgtaaa ggcatctgcc cagcataatt cagaaatagg atccagtagt
     1021 gtcaatcctc ttgtcaagtc aatagattga gatcgggcag gtgcacttgt aactaatgca
     1081 gtctgttgct ttggtgtatt tgcaacaggg gaagatggca ataatttctg ctgtttctta
     1141 tccttagcta acttcctgat ttttaataat tctgaaggca aggatataaa accactaaat
     1201 gatttacaag cgtttattaa agcatatcct aactgataag aaatcattct ttcaagattt
     1261 ctattttctt caatgttctt ttgctctaac aaaatattta atctggatat gtcttgctgt
     1321 tgaacatgat tagtttgctc aaggctgctt actttatttt ctagctcctt gagcttttta
     1381 ttatgctcag ttttcagctc atctataaac tgccgattac taaaactaat tttatttaaa
     1441 taatcttcca gtaatgtttg ataattgaca gaatttaata cttcgcctga attttgttgt
     1501 gatgcattag tattgttaat agtggattta cgatattgct gtttcttttt catcacttat
     1561 ctccaaattc ctttagtatc caccacacaa atatcattca aaaacacagg tttgactagt
     1621 ttaaattcgc tatgatccac caaaacaact acaacatcag ctacttccag agcttcatca
     1681 acagaaatca aagaaatgtt cttgttagcc aattttttcg gtagctcttc aacattcggc
     1741 tcaactgcaa atacttgatt tggatacttt tccgccaatt tttcagtaat ttttaatgcc
     1801 ggactttcac gcaaatcgtc aatatcaggc ttgaatgcca accctaaaca agcaattttg
     1861 atttgatcga tagatttacc tgttttttgt aaggcataaa ttaccgcttc attcatcttt
     1921 gagataaccc attcaggttt atgatcgttt acctcacgag cagtgcggat aatttttgcc
     1981 aagtcaggag ttttattcac aataaaccaa ggatctacag caatgcagtg tccacctaca
     2041 ccacaacccg gttgtaagat attgactcga gggtgtctgt tagccaaagc aattagttcc
     2101 catacattaa tatctaggcg atcacaaata atagaaagct catttgcaaa agcgatattg
     2161 acatcacgga aactattttc ggttaattta cacatttctg cggtacgggc attggtaact
     2221 atacagtcgc cttttacaaa agttttgtat aaattgaccg cttgcacaga gcatttattt
     2281 gtcataccac ccacaatacg gtcgttttca atcaattcat gcatcacttg tcctggtaga
     2341 actcgttctg ggcaatgggc gatacgaata tcagaatctt cacctgcttg ctgagggaag
     2401 cttagctctg gacggtactc ggcaagccac tcagccatct gttctgttgc accaaccgga
     2461 gaggttgatt ctaaaatgac taaattacct ttttccagca caggtgcaat tgctttgcaa
     2521 gcagcttgaa tataacttaa atcaggctca taatcctcgc ctttaaaagg cgttggtaca
     2581 gcaattaaaa atgcttctgc tggttcaggt gtcagtgtgg cttttaattt tccgctagat
     2641 acacattggt gaacagcaac atctaaatca ggctcgacaa tgtgaatttt cccttgattg
     2701 atatggtcta cggcgtgctg attaacatct acgccaatta catttagacc gtgttgggca
     2761 aatacagtgg cggttggtaa gccaatatag cctaagccta ctactgaaat ggtattaaag
     2821 ttcgacatac atttatccct tattattgtt ttgattgaaa tactgagaga atttgtttca
     2881 cagctgtgcc atcgccataa gggttgtgag cctcagacat ttttgtataa gcagcttgat
     2941 cattgagtaa ctcagtaact tgtttaataa tttcagattg tgcagttcca acaagtttta
     3001 ctgttccggc ttctacagct tccggtcttt ctgttgtgtc tctcattact aataccggtt
     3061 ttcctaatga tggggcttct tcttgaatac ctccggagtc agttaagata aggtaagact
     3121 ctctcattaa ataaacaaag gagagatagt cgcaaggctc aatgagatgc acattggatt
     3181 tatccgctaa taggcgattg accggttctc ttacatttgg gttgaggtgt acggggtaga
     3241 taaattgaac gtcagggaaa tcagacgcta atgttgaaac ggctttacag atgttctcaa
     3301 aaccattacc gaaattttcg cggcgatgtc ctgtgatcaa aatagtacgc ttacttttta
     3361 tataagaaaa tttctcttgt agcgagctta ataaatcaat attttcatct aattttttgc
     3421 aagcgaggaa taaggcatca attaccgtat tacccgttac ataaatggtg ccctcagcaa
     3481 tattttcgtt gagtagattt ttcttggtgc tttgtgttgg tgcgaaatgg tattttgcca
     3541 aagcagctgt taatttgcga ttgccttctt ccggccaagg agagtagata ttatgcgttc
     3601 ttagacctgc ctcaatatga gcgatatcaa tttggttgta ataggctgct aatgaagagg
     3661 caagagtggt tgctgtatcg ccatgaacaa aaatagtagt tggtttgtat tcggcaataa
     3721 caggttgaat tttttctaaa atagcagaag ttacagtaga aagtgtttgc ttattgctca
     3781 taatatccag gtcataatct ggagtaattt cgaataattc taaaacttgg tccagcattt
     3841 ggcggtgctg agcagtaaca cagactttaa aatttagacc gcttttctta aagccctcaa
     3901 ctaagggagc cattttgatt gcctcaggac gagtaccgaa gacgatgaga tagcgcattt
     3961 attactcctt taaaaatata gataaaacta aaatacacta gatgta
//
LOCUS       DANLZD010000180         3980 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.181, whole genome shotgun sequence.
ACCESSION   DANLZD010000180 DANLZD010000000
VERSION     DANLZD010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3980)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3980)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3980
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.181"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..272
                     /locus_tag="PXE26_002377"
     CDS             <1..272
                     /locus_tag="PXE26_002377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL5594917.1"
                     /translation="NPDIAFVSCNSWSLEKGVTAPTEEKANLKRMLQQNAKQKVLVAD
                     SSKYGKYSLFRATQLDNFTQIITDKGLPIEYSQALSSNDFKLSLV"
     gene            complement(353..523)
                     /gene="rpmG"
                     /locus_tag="PXE26_002378"
     CDS             complement(353..523)
                     /gene="rpmG"
                     /locus_tag="PXE26_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDL5594918.1"
                     /translation="MAAKGAREKIRLVSTAETGHFYTTDKNKRNMPEKMEIKKFDPVV
                     RKHVIYKEAKIK"
     gene            complement(535..771)
                     /gene="rpmB"
                     /locus_tag="PXE26_002379"
     CDS             complement(535..771)
                     /gene="rpmB"
                     /locus_tag="PXE26_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_004997628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HDL5594919.1"
                     /translation="MSRVCQVTGKRPAVGNNRSHAMNATKRRFLPNLHTHRFWVESEN
                     RFVTLRLTAKGMRIIDKKGIDAVLAEIRARGEKI"
     gene            complement(1003..1740)
                     /gene="radC"
                     /locus_tag="PXE26_002380"
     CDS             complement(1003..1740)
                     /gene="radC"
                     /locus_tag="PXE26_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HDL5594920.1"
                     /translation="MEEKMNDFFDEDSQEPTMMPREKLLTQGAASLTDSELLAIFLRT
                     GTKAVPVLALAESVLMAFGSLRQLLNANIDDFCKIYGLGKTKYIQLQASKEMTKRYLA
                     QQMEFSEMIQAPYMAIMYFQTELEEEEREVFMVLFLDNQNRLIYKEKMFFGTINQTAV
                     HPREIIKRALKYNAAAIIVAHNHPSGSCLPSESDRSLTKKIEMACELVDIRFVDHIIV
                     GKGDYFSFEEEKLEMKEHSFLQISDRK"
     gene            1890..3092
                     /gene="coaBC"
                     /locus_tag="PXE26_002381"
     CDS             1890..3092
                     /gene="coaBC"
                     /locus_tag="PXE26_002381"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HDL5594921.1"
                     /translation="MLQNKKILVGISGGIAAYKTIEFIRHLKKANAEVRVVLTPAAEA
                     FVTPLTLQAISGNAVSTSLLDPQAELAMGHIELAKWADLIVIAPASADFIARLRMGMG
                     NDLLSTLCLATASPILLAPAMNQQMYKQIAVQENLSVLVNRGVQLIGPNSGFQACGDV
                     GAGRMSEPEEIYQAVLAHFSNNQDLEGLNVTITAGPTREAIDPVRYISNHSSGKMGYA
                     IANAFAERGAKVTLISGPVNLPTPKNVERINVESAVEMEQQAVKFAQKSAIFIGCAAV
                     ADYRMAAVSDQKIKKTDANDELTLKLVKNPDIIANVANLAENRPFVVGFAAETQNVAE
                     YAKSKLERKNLDMICANDVSGGQVFGQDQNALHLFWKNGEKTLPLADKSKLAESLVQE
                     IVKHYREK"
     gene            3092..3409
                     /locus_tag="PXE26_002382"
     CDS             3092..3409
                     /locus_tag="PXE26_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594922.1"
                     /translation="MKLLVSHFHQGEGKFPTFSAGTAVRLGSECVNYPNWFACEIDGW
                     KTFVPSHFISEDKLICDYNPTELVAAQGERVEFLELHYQWAIVKRENEIGWLPCEILR
                     VIG"
     gene            3406..3588
                     /locus_tag="PXE26_002383"
     CDS             3406..3588
                     /locus_tag="PXE26_002383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL5594923.1"
                     /translation="MKIMQLTSNQYINDIKHILLSARQKAYQAVNSAMVEAYWKIGER
                     IVQEEKNMVKDQNEKV"
     gene            3575..>3980
                     /locus_tag="PXE26_002384"
     CDS             3575..>3980
                     /locus_tag="PXE26_002384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HDL5594924.1"
                     /translation="MKKYNIVFSADKNYLPYLEIALKSLLAHHNHLSIFILSTGDISH
                     HWIETLRPYLENRYSTLRLGYLDSNNLANFNSNGYITNSTYLRYYIEELFEHSDSPYW
                     IYLDCDLVVNGNITDPFTNLDFSFGSIAAIADP"
BASE COUNT         1217 a          801 c          784 g         1178 t
ORIGIN      
        1 ttaatcctga tattgctttt gtgagctgta attcttggag cttagaaaaa ggagttacag
       61 cacctacaga agagaaagct aatttaaaaa gaatgctcca acaaaacgcc aaacaaaaag
      121 tactggttgc cgatagcagc aaatatggaa aatactcttt atttcgtgca actcaactcg
      181 ataactttac acaaattatc acagataaag gactacctat tgaatatagc caagccttgt
      241 caagtaatga ttttaagcta tcattagttt aatcatacaa gcggtctttt ttcactaatt
      301 ttttgtatat gaaaaaccca gcattcgctg ggttttaaat cttaaaacaa aattatttaa
      361 tttttgcttc tttgtagata acgtgtttac gcacaactgg atcaaatttt ttgatttcca
      421 ttttttcagg catattacgt ttgtttttat ctgttgtgta gaagtgacca gtttctgctg
      481 tagaaactaa acggattttc tcacgagcgc ctttagctgc cattttttag ctccttagat
      541 tttttcgcca cgagcacgga tttcagctaa tactgcatca atgccttttt tatcaataat
      601 acgcatacct ttcgcagtta aacgtaaggt tacgaaacgg ttttcgctct caacccagaa
      661 acggtgagtg tgaaggtttg gtaagaaacg acgtttagtc gcattcattg cgtgtgagcg
      721 gttgttacca actgctggac gcttgccggt tacttggcaa actcttgaca tttgaatttc
      781 tccaataatt ttaagcttaa aaatggttcg ggcgatctca caaaaggcgt tgctcaacca
      841 acccctccga ttttgattgc ctcgtcaggc attaacccga ccacagtcta tgtaataaag
      901 actgccgatt ataccgattt catttgttat attcaagtag aatttatatg cgtatctttt
      961 actgtttcag gagaaatgtt aaaggttaca taaagcaagc ggtcattttc tatcagaaat
     1021 ttgcaaaaat gaatgctcct tcatctctaa tttctcttcc tcgaacgaaa aatagtcccc
     1081 tttgccgaca ataatatgat ccacaaagcg aatatcaacc aattcgcacg ccatttcgat
     1141 ctttttagtt aaacttctgt ccgactcact cggcagacaa gaacctgagg ggtgattatg
     1201 agccacaata atcgccgcgg cattatattt taacgctctt ttaataattt ctcgggggtg
     1261 aacagcagtt tgattaatgg tgccgaagaa cattttttct ttataaatca atcggttttg
     1321 gttgtccaaa aacagcacca taaaaacttc ccgttcttct tcctccaact cggtttggaa
     1381 atacataatc gccatataag gggcttgaat catctcgcta aattccattt gttgagccag
     1441 atagcgtttg gtcatctctt tagaggcttg taactgaatg tatttggttt tgcctaaacc
     1501 gtaaattttg caaaaatcat caatatttgc attcagtaat tggcgtaacg agccaaatgc
     1561 catcaacaca ctctctgcca atgccagcac aggcacagct ttcgtaccag tccgtaaaaa
     1621 tatcgctaat aattcggaat cggttaatga ggctgccccc tgtgttaata atttctcacg
     1681 cggcatcatt gttggctctt gagaatcttc atcaaaaaaa tcgttcattt tttcctccat
     1741 caatttagtt aagcataaaa gagccaacct ttgcagacaa agggatttat tcaatttttc
     1801 gagcaagatc gcaaaaatag tgaagttgtg agcaactcct tattccgcta aaatatgcaa
     1861 aataaatcca cgctttaagg atagtaaaga tgttacaaaa caaaaaaatt ttagtcggca
     1921 tttccggtgg gattgcagcc tacaaaacca ttgaatttat ccgccactta aaaaaggcaa
     1981 atgcggaagt gcgtgtagtg ctaaccccag cagcagaagc ctttgtaacg cctttgacct
     2041 tacaagcgat ttccggcaat gcggtttcca cttcactact cgacccacaa gccgaactgg
     2101 cgatggggca tattgagctg gcaaaatggg cggatttaat cgttatcgcc ccggcaagtg
     2161 ccgattttat tgctcgcctg cgtatgggaa tgggcaacga tttactttcc actctctgcc
     2221 ttgcgactgc aagcccgatt ttgcttgcac cggcaatgaa tcaacaaatg tacaaacaga
     2281 ttgcggtgca agaaaatctg tctgttttag tcaatcgtgg cgttcagctc atcggcccga
     2341 atagtggctt ccaagcctgt ggtgatgtgg gggctggcag aatgtctgag cctgaagaaa
     2401 tttaccaagc ggtgttggct catttctcca acaatcaaga tttagagggc ttaaatgtaa
     2461 ccattaccgc cggaccgact cgtgaggcga ttgaccctgt gcgttatatc agcaaccaca
     2521 gctccggcaa aatgggctac gcgattgcta atgcctttgc cgaacgtgga gcaaaggtta
     2581 cgttgattag cggtccggtg aatttaccaa cgccgaaaaa tgtggaacga attaatgtgg
     2641 aatctgcggt tgagatggag caacaagcgg tcaaatttgc ccaaaaatct gcgattttta
     2701 ttggctgtgc agcggttgcc gattaccgaa tggcggcagt ctctgaccaa aaaattaaga
     2761 aaaccgatgc caatgatgaa ctcacgctaa aattggtaaa aaaccccgat attatcgcta
     2821 acgtcgccaa tcttgccgaa aaccgccctt ttgtggttgg ttttgccgca gaaacgcaaa
     2881 atgtggcgga gtacgctaaa tcgaaactcg aacgcaaaaa tctggatatg atttgtgcca
     2941 atgatgtctc aggcggacaa gtgttcgggc aggatcaaaa tgcgttgcat ttgttctgga
     3001 aaaatggtga aaaaacgctt cctctggcgg ataaaagcaa attggcagaa agtttggtac
     3061 aggaaattgt aaaacattat cgagaaaaat aatgaaatta ctggttagcc attttcatca
     3121 aggcgaaggg aaatttccta cattctcagc tggtactgcc gttcgattag ggagtgaatg
     3181 tgtaaactac ccaaactggt ttgcctgtga aattgacggt tggaaaacct ttgtgccaag
     3241 ccattttatt agcgaagata aattgatatg cgattataac ccaacggaac ttgttgcagc
     3301 acaaggcgag agagtagaat tccttgaact acattaccaa tgggcaattg tcaaaagaga
     3361 aaacgaaatt ggctggctac cttgtgaaat cttaagggta ataggatgaa aattatgcaa
     3421 cttacgtcaa atcagtatat caacgacatt aaacatattc ttttatctgc tcgccaaaag
     3481 gcgtatcaag ccgtgaattc ggcaatggtc gaagcctatt ggaaaatcgg tgaacgaatt
     3541 gtgcaagaag agaaaaatat ggtcaaagat caaaatgaaa aagtataata ttgtattttc
     3601 agcagataaa aactacctgc catatttaga gattgcctta aaatcactat tagctcatca
     3661 taatcattta tctattttta tattgagtac tggcgatatt tctcaccact ggatagaaac
     3721 attacgcccc tatttagaaa atagatattc cacattaaga cttggctatt tagattcaaa
     3781 taatttagca aattttaact ccaacggcta tattactaat tcaacttacc tacgatatta
     3841 tattgaagaa ctatttgaac acagcgatag cccatattgg atttatttag attgcgatct
     3901 tgtggttaat ggaaatatta cggatccatt tacaaaccta gatttttctt ttggaagtat
     3961 tgctgcaatt gctgatcctt
//
LOCUS       DANLZD010000181         3953 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.182, whole genome shotgun sequence.
ACCESSION   DANLZD010000181 DANLZD010000000
VERSION     DANLZD010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3953)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3953)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3953
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.182"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(156..2720)
                     /locus_tag="PXE26_002385"
     CDS             complement(156..2720)
                     /locus_tag="PXE26_002385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HDL5594925.1"
                     /translation="MRIAKIIFSALLSLLVLGGVIGGLLYMHFKSDLPDVATLKNVEL
                     QQPMQIFTLDGKLIGEVGEERRIPVKLDDIPPMLVKAILATEDARFYEHKGIDPKGIM
                     RAIWRTSQGDTQGASTITQQLAKNFFLTPERSLERKAKEAILALEIEQVLSKNEILEL
                     YLNKIYLGYRSHGVAAAAKTYFNKSLKDLTLSEIAIIAGLPKAPSTMNPLYSVKRAED
                     RRNVVLGRMLETGDITKEEYEKAKAEPVVANYYGATLEFRADYVTEMVRQEIVKRYGE
                     NIAYNKGLKVYATVLSADQKAAQDALRENLIDYDRRHGWRGAEKLWTGSSAWDDEKII
                     DHLSKLPKSEPFTPAVVMQADKSKYTILLANGDISVLKRTNASFAPKGLKAGEQIWVR
                     QNKNREWALGQIPEVNSALVSINSENGAIESIVGGFSFEQSRFNRATQSLVQVGSAIK
                     PFIYTAAMNKGLSLSTTISDSPIVIKKKGQKEWRPKNADGVYGGPLRTRVALGKSKNM
                     VAIRILQMAGIDYVADYLQRFGFNRNQYVATESLALGAASFTPLEMARAYAVFNNGGY
                     LIEPYIIDRIIDAQGYELYQANPVVACNSCDSPVVYPEPKYFESVKIHDEAQVGVQTI
                     ANSSNNDDDDVVEDVGDSEPELQANNSEKNAPSLMAESSHHIKGLRYAPHVISDELAF
                     LMRSALATAITGEPEYGWRGTSYKMLNTIKRADVGGKTGTTNNAKATWYAGFGANIST
                     VVYVGFDDNKRVLGRGASGSSTALPAWTNYMKVALSDKPVEKSTLPKNIIEVNIDPNS
                     GFLGNGRKEYFIKGTEPTKRYIVERAYTEKAPQKTESAPLRLGLPPPGVLKSGELF"
     gene            2844..3542
                     /locus_tag="PXE26_002386"
     CDS             2844..3542
                     /locus_tag="PXE26_002386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComA"
                     /protein_id="HDL5594926.1"
                     /translation="MKLLKAHSKTPSNRIILGLSEDEQRYCLVKNKAEKFTVFWQAKP
                     ASIEELIGNLTPQEQAMMTLVRPIPYQYIWRKTVFMANTLNEAQLHRKVIHILKNEQP
                     LALDLLNIDYQRFPSSNDNLDKVVIYAVRKSYTENLSQFNSILDCELHCYARAIIHLT
                     QSQNNQPAPCFSFKQKYFQFTETELLILQTEPEDCIHLSDLKIDHLEIECEQEKQLYC
                     LALGASLWNGKVLI"
     gene            3518..>3953
                     /locus_tag="PXE26_002387"
     CDS             3518..>3953
                     /locus_tag="PXE26_002387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594927.1"
                     /translation="MEWQGIDLSANRKNNWFAGSDKGIKNVIYTLLLSALISLALIFL
                     YLQKNQEIQPLAQQLELVKTDILNIENKIISLNSNHTNTLPFAEPKKIAQLLAIIDNL
                     PLKNGGIETIQIYLETDLYLKIIGNLDNQSDFQSLESYLYQQD"
BASE COUNT         1230 a          859 c          644 g         1220 t
ORIGIN      
        1 tctgatttct ttaaaaaatt gcaataaaac tcatttattg actaaggaat atccaaatat
       61 aactcacaaa tcgcccaaaa taaaattggc acttattatc gcaagaaatc cccctatttt
      121 tcaactttta agagcattat ccttgtaata aattattaga ataattcacc gctttttagc
      181 acccctggtg gaggtaatcc taaacgtaac ggcgcagatt ctgttttttg aggcgctttt
      241 tcagtataag ctctctctac aatataacgt tttgtaggct cagtaccctt aataaaatac
      301 tctttacgtc catttcctaa gaaaccacta ttagggtcaa tattaacctc aataatattt
      361 tttggaaggg tacttttttc gacaggctta tctgacaatg caactttcat ataatttgtc
      421 caagctggta aagcagtact agaacctgaa gcacctctac ctaatactct tttattatca
      481 tcaaagccaa cgtacacaac agtagaaata ttagcaccaa atcccgcata ccaagttgcc
      541 ttggcattat tggttgtacc agtcttcccg cccacatccg ctcgttttat cgtattgagc
      601 attttatagc ttgttcctcg ccagccatat tcaggctcac cagtaattgc tgtagctaaa
      661 gcactacgca ttaaaaaagc gagttcatca ctaataacat gaggagcgta acgtaaccct
      721 ttgatatgat gagaagattc tgccattaag ctcggcgcat ttttctcgct attgttcgct
      781 tgtaattcag gttctgaatc gccaacatct tccacaacat cgtcgtcatc attattcgag
      841 gaattcgcta tagtttgtac accgacttga gcttcatcat gaattttgac tgattcaaaa
      901 tatttaggct cagggtaaac aactgggcta tcgcaactat tacaagctac tacaggattt
      961 gcttgatata actcgtagcc ttgggcatca ataatacggt caatgatata tggttcaatc
     1021 aaataacctc cattattaaa tactgcataa gctcgagcca tttctaatgg cgtaaaagat
     1081 gcagcaccca atgcaagaga ttctgttgca acatactgat ttcggttaaa gccaaaacgt
     1141 tgtaagtagt ctgcaacata atcaatccct gccatttgta atatacgaat agccaccata
     1201 tttttcgatt tacctaatgc aacacgagtt ctcaacgggc cgccataaac cccatcggca
     1261 tttttaggtc gccactcttt ttgccctttc tttttaatga caataggaga atcgctaatt
     1321 gttgttgaaa gacttagccc tttattcatt gccgctgtgt aaataaacgg tttaatcgca
     1381 gagcctacct gaactaatga ctgagtcgca cgattgaaac ggctttgttc aaagctaaag
     1441 cctccaacga tagattcaat ggcaccgttt tcactattaa ttgacactag ggctgaattt
     1501 acctccggaa tttgtcctaa agcccactcc ctatttttat tttgacgtac ccaaatttgt
     1561 tcacctgctt ttaacccttt aggtgcaaaa gaagcatttg tacgttttaa aacagagata
     1621 tcaccatttg ccaataaaat tgtatatttt gatttatctg cttgcattac aacagctggt
     1681 gtaaacggct ctgattttgg cagcttactt aaatgatcga taattttctc atcgtcccaa
     1741 gcagaactac ctgtccataa tttttcagcg cctcgccaac catgacggcg gtcataatca
     1801 atcaaatttt cacgtaacgc atcttgtgct gctttttggt ctgctgaaag taccgtggcg
     1861 tacactttta agcctttgtt ataagcaata ttttctccat agcgtttcac aatttcttga
     1921 cgaaccattt ctgtcacata atccgctcga aattctaatg tcgcaccata gtagttagct
     1981 actactggct ctgctttagc tttctcatat tcctcttttg taatatctcc ggtttctagc
     2041 attctcccaa gcactacatt acgacggtct tccgcccgtt ttactgaata aagtggattc
     2101 atcgttgaag gcgcttttgg aagccctgca ataattgcta tttcagaaag ggttaaatct
     2161 ttcaaagatt tattaaaata agttttagcc gcagcggcaa caccgtgaga acgataccct
     2221 aggtaaattt tgtttaaata cagctccaga atctcatttt tactgagaac ctgttcaatt
     2281 tctaaagcta aaattgcctc tttggcctta cgctctaaac tacgttcagg tgttaagaaa
     2341 aagtttttcg ccagctgctg ggtgattgta cttgcgcctt gagtatctcc ctggctagtg
     2401 cgccatattg cacgcataat acctttagga tcgatccctt tatgctcgta aaaacgtgca
     2461 tcttcggtag caagaatcgc ttttactaac atcggtggaa tatcatcaag cttgaccgga
     2521 atacggcgtt cttctcctac ttcaccaatt aatttaccat ctaaggtaaa aatctgcata
     2581 ggctgctgta actctacatt tttcagcgtt gccacatcag gcaaatcaga tttgaaatgc
     2641 atgtacagta aaccaccaat taccccacct aaaaccaaga gtgaaagtaa agcactaaat
     2701 attatttttg cgatccgcat cgaaaaaatc tcttttggtt aatgacgaaa cataaattta
     2761 aagccaatat taggtcacta agtataagct aaaaacgctt acttcgcata actaattgca
     2821 aaactttcct tactatactt actatgaaat tacttaaagc acattcaaaa acaccttcaa
     2881 accgtatcat cttaggctta agtgaagatg aacaacgtta ctgcttagtc aaaaataaag
     2941 cagaaaaatt caccgttttt tggcaagcca agcctgcgag catcgaagag cttatcggta
     3001 atctcacccc acaagaacaa gcaatgatga cgctggttcg cccgatccct taccaataca
     3061 tttggcgaaa aaccgttttt atggctaaca ccctcaatga agctcaatta caccgtaagg
     3121 taattcacat tttaaaaaat gagcagccac ttgcattgga tctactcaat attgactatc
     3181 agcgatttcc aagcagcaac gataatctgg ataaagtggt tatctacgcc gtgcgaaaaa
     3241 gttataccga gaatttgagc caatttaaca gcatcttaga ttgtgagctg cattgctatg
     3301 cacgggctat aattcattta acacaatccc aaaataatca gcctgcgccc tgtttttcat
     3361 ttaaacagaa gtacttccaa tttaccgaga cggaattact gatattgcaa acagaacctg
     3421 aggattgtat tcatctatct gatctcaaaa ttgaccatct tgaaatcgag tgtgagcaag
     3481 agaaacagct atattgcctc gccttaggag caagtttatg gaatggcaag gtattgattt
     3541 aagtgctaat cgaaaaaata actggtttgc cggcagtgat aaaggcatca aaaacgtgat
     3601 ttatacactt ttattatctg ccctcattag cttggctctg atttttctct atttgcaaaa
     3661 aaatcaagaa attcaaccgc ttgcacagca attagagctg gtaaaaaccg atatattaaa
     3721 tattgaaaat aaaattatca gcttgaatag taatcataca aacaccttgc cctttgccga
     3781 gcctaaaaaa atagcacaac tactggcaat aatagataac ttaccgctca aaaatggggg
     3841 aattgaaacg atacaaattt atcttgaaac cgatctctat ttaaaaataa tcggtaattt
     3901 agataatcaa tctgattttc aaagtctaga atcttattta tatcagcaag att
//
LOCUS       DANLZD010000182         3949 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.183, whole genome shotgun sequence.
ACCESSION   DANLZD010000182 DANLZD010000000
VERSION     DANLZD010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3949)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3949)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3949
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.183"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(334..1428)
                     /locus_tag="PXE26_002388"
     CDS             complement(334..1428)
                     /locus_tag="PXE26_002388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HDL5594928.1"
                     /translation="MKKTTLAILASALIANSALAITIYDHKETGTQIEFIGSARIKWE
                     STSDKTSPVNGKATRNHVNHAVDNNGSRFGFRLTQQVGHGFYALGRVEWRMRGDSSSQ
                     HNFDHIYDHQLYAGIGHKQYGELTYGNMTNIADEVKQTDLPNTLSLSDGLLTGSSRRT
                     LQYVYKGIEGLKLGAFYGGNSQRGNNGLDLVNKRKDIWGAAAIYNYKIDDNQSLKLAT
                     GATRERSEQSIGNYERIALAFGTAYTYGKTTLGLDLERRETEDQNAIGHKRIEKEVRT
                     VLLHRLTDQWNAYTMYAYKENKLNAVGLANDSKVKRNQFMLGTEYYIVPKHLKGFVEW
                     QATRAKHYTNDVKTAKSRNYTTVVGLRAYW"
     gene            1562..2740
                     /gene="lpxB"
                     /locus_tag="PXE26_002389"
     CDS             1562..2740
                     /gene="lpxB"
                     /locus_tag="PXE26_002389"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HDL5594929.1"
                     /translation="MKQQFPVIGLVAGEVSGDILGAGLIKALKVHYPNARFIGVAGSR
                     MIEAGCQSLFDMEELSVMGLAEVVKHLPRLLKRRKQVIDEMLKLKPDVFIGIDAPDFN
                     LTVEEKLKASGIKTIHYVSPSVWAWRQKRVFKIARAANLVLAFLPFEKAFYDKFNVPC
                     RFIGHTMADAIPLEPNRTEACLALNIDESKRYMAILVGSRGSEIQFLAEPFLKAAQLL
                     KARFPDLQFLVPMVSQKRMEQFNAIKQQVAPELELNIIQGKARQAMIASECTLLASGT
                     AALEAMLCKSPMVVGYRMKPLTYWLAKKLVKTDYISLPNLLAQAPLVPELIQEACNPE
                     NLAQELSLFLADDEKNQQHKALLKQQFMQLHQSIQCNADEQAAQAVIDLLNGSTSGQI
                     "
     gene            2767..3819
                     /gene="sohB"
                     /locus_tag="PXE26_002390"
     CDS             2767..3819
                     /gene="sohB"
                     /locus_tag="PXE26_002390"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HDL5594930.1"
                     /translation="MWKEVLLNYGIFLLELLTVFGIIAVVVMLILESKKQNENGSISI
                     TNLSEKYKEQQKSLSGFFLSEEELKHQEKQEKKVAKEKAKAEKKRLKAGEECVESPSR
                     LFVLNFNGDMMAHEVNSLRREIDAVISLANPEKDEVLLKLESPGGVVHGYGLAASQLQ
                     RLRDRNIYLTAAVDKVAASGGYMMACVANKIVSAPFAVIGSVGVVAQVPNIHRLLKKH
                     DIDVDVMTAGEYKRTVTLVGENTEKGKQKFQQELEETHSLFKQFVARHRPQLDIEQVA
                     TGEHWFGQQAIELNLVDEIATSDDLLLNAIKEKEVIELKYKEKKKLAQKLGSQFEQSA
                     ENLLAKILHKSRSTLM"
BASE COUNT         1173 a          681 c          856 g         1239 t
ORIGIN      
        1 gactgtcaga ttaggtttga tcttctacat ataataaccc ctcatcactt tttgcagttt
       61 aacctctttt gcaacagata atttaaattt aggcgttttg gctgctcagt tattgccatt
      121 atgattatat tagttcacac taaaatttta gtgttgtttc ttaaagctga agatgctaat
      181 aggtgagtaa gcggttttta ccactttgaa gataaatgca atagcttctt gtttgaagga
      241 ttagttgtat ttaatcataa aaaatctgca ccttaatcag ttggttagcc caacttttag
      301 gtgcagatca ttctagtacg cttttcagtt ttattaccaa tatgctcgta agcctacaac
      361 agtcgtataa ttgcgagatt ttgcggtttt tacatcatta gtatagtgtt tagcacgagt
      421 tgcttgccat tcaacaaagc cttttaagtg ttttggaaca atgtaatatt ccgttcccaa
      481 cataaattgg tttcttttaa ctttgctatc atttgccaag cctacagcat taagtttgtt
      541 ttctttataa gcatacattg tgtaagcatt ccattgatcg gttaaacgat ggagtaacac
      601 agtgcgaact tctttttcga tacgtttgtg accgatagca ttttgatctt ccgtttcacg
      661 gcgttctaaa tctaagccaa gggtagtttt tccgtaggta taagctgtac cgaaggcaag
      721 agcaatgcgt tcataattgc cgatagattg ctcagaacgc tcacgggttg cacctgttgc
      781 taattttaag ctttggttat catcaatttt atagttataa attgctgctg caccccaaat
      841 atctttacgt ttattgacta aatctaagcc attgtttcca cgttggctat ttccgccata
      901 gaatgctccg agttttaatc cttcgatgcc tttgtaaaca tattgaagcg tacgtcgtga
      961 tgaaccggta agtaagccat cacttaagct gagtgtattt ggtaagtcag tttgttttac
     1021 ttcatcggca atattagtca tattgccgta tgttaattca ccgtattgtt tatgcccgat
     1081 tcctgcatag agttgatgat cataaatatg atcgaagtta tgttgtgagc ttgaatcgcc
     1141 acgcatacgc cattccacac gacctaaagc atagaatccg tgacccactt gctgggttaa
     1201 acggaaacca aaacgagagc cgttgttatc cactgcgtga ttaacgtggt tgcgggtagc
     1261 tttaccattt accggtgagg ttttatctga ggtgctttcc cacttaatac gagcagaacc
     1321 aataaattca atttgtgtac cggtttcttt atgatcgtaa atcgtaatag ctagagctga
     1381 gtttgcgatt aaggctgatg ctaaaatcgc taatgttgtt tttttcataa aaatcactcc
     1441 atatgaatag ataaagggag gtagtgtatg tgaatattca ttgctagaca ataatgtttt
     1501 gttagtttat atgatgattg gttataatag agtcacttac agatcttcaa taatatttaa
     1561 tatgaaacaa caattccccg ttattggctt agttgctggt gaggtctctg gcgatattct
     1621 tggtgccggg ttaattaagg cgttaaaagt acattacccg aatgctcgat ttatcggtgt
     1681 tgcaggctct cgaatgattg aggctggctg ccagtctttg tttgatatgg aagagctttc
     1741 tgtaatgggg ctagcagagg tggttaaaca tttacctcgt ttacttaagc gtcgtaaaca
     1801 ggttattgat gagatgctta aattgaaacc agatgtattt atcggtattg atgcaccgga
     1861 ttttaattta accgttgaag aaaaactcaa agcgagtggg attaaaacaa tccattatgt
     1921 tagcccttcg gtgtgggctt ggcgacaaaa gcgggtgttt aaaattgcca gagcagctaa
     1981 tttagtgttg gcatttctgc catttgagaa agcgttctat gataaattca atgtgccttg
     2041 tcgttttatc gggcatacga tggcagatgc gatcccactc gaaccaaatc gtacagaggc
     2101 atgtttagcg ttaaatattg atgaatccaa gcgatatatg gcaattttgg tgggaagccg
     2161 tggcagtgaa attcagtttt tggctgagcc ttttttgaag gctgctcagt tgttaaaagc
     2221 ccgttttccg gatttacagt ttttagtgcc aatggtcagc caaaagcgaa tggagcaatt
     2281 taatgcaatt aaacagcaag tagctcccga gttggaactg aatattattc aaggcaaggc
     2341 tcgtcaggct atgattgcgt cagaatgtac tcttttggca tcgggaacag cagcactaga
     2401 ggcaatgttg tgcaaatctc cgatggtagt tggttataga atgaaaccgc tgacttattg
     2461 gttagcaaaa aaattagtga aaaccgatta tatctcctta ccgaatttat tggctcaagc
     2521 cccattggta ccagaattga tccaagaagc atgcaacccg gaaaatttag ctcaagagtt
     2581 atctctattt ttagctgatg atgagaaaaa ccaacaacat aaagcattgc taaaacagca
     2641 gtttatgcag ctacatcaat caattcaatg taatgctgat gagcaagctg cccaagcggt
     2701 tatcgatctc ctaaacggct cgacaagcgg tcaaatttag ttagtttttt gtaaaaagga
     2761 aaatttatgt ggaaagaagt attacttaat tatggtattt ttttattaga gttattaact
     2821 gtatttggca ttattgcagt ggtggtgatg ctgattttgg aatcgaaaaa gcagaatgaa
     2881 aacggctcaa tttcaattac caatttatct gagaaatata aagagcagca aaaatctctt
     2941 tccggctttt ttctaagtga ggaagaatta aaacatcagg aaaagcagga gaaaaaagta
     3001 gcaaaagaga aagctaaagc agaaaaaaaa cgcttaaaag caggcgaaga atgtgtagaa
     3061 agcccttccc gtttatttgt attgaatttt aatggcgata tgatggctca cgaagtaaat
     3121 tccctacgcc gtgaaattga tgcggtaatt agcctcgcga atccggaaaa agatgaagtt
     3181 ttacttaaac ttgaaagtcc gggcggagtg gtgcacggtt atggattggc tgcttcgcag
     3241 ttacaacgtt tgcgtgatcg caatatttat ttaaccgcag cggtagataa agtagctgcc
     3301 agcggtggtt atatgatggc gtgtgtggcg aataaaattg tctctgcccc atttgcggtg
     3361 attggctcag tgggggtggt ggctcaggtg ccgaatatcc accgcttact gaaaaaacac
     3421 gatattgatg tggatgtgat gactgcaggt gaatataaac gcacggtgac gctggtggga
     3481 gaaaataccg aaaaagggaa acagaaattc cagcaagaac tggaagaaac gcactctctg
     3541 tttaagcaat ttgtggctcg acaccgccca caactggata ttgagcaggt tgcaacaggc
     3601 gagcattggt ttggtcagca agcgattgag ctaaatttgg ttgatgagat tgcaaccagt
     3661 gatgatctgc tcctcaatgc aattaaggaa aaagaagtga tcgagctaaa atataaagag
     3721 aagaaaaaac ttgctcagaa attgggttct caattcgagc aatcagcaga gaacctgctc
     3781 gctaagattt tacataaaag tcgttcaacg ctgatgtagc gtatatatta ttaaagggct
     3841 atcgtttata tagcccctta ttttatcagt tagtaataga atgaagtatt tgttcactat
     3901 ttaaatgacc tggaatactt ttctttaaat tgagtgaaga atctaacaa
//
LOCUS       DANLZD010000183         3893 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.184, whole genome shotgun sequence.
ACCESSION   DANLZD010000183 DANLZD010000000
VERSION     DANLZD010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3893
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.184"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            254..586
                     /locus_tag="PXE26_002391"
     CDS             254..586
                     /locus_tag="PXE26_002391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF413 domain-containing protein"
                     /protein_id="HDL5594931.1"
                     /translation="MADSFSVTRRFFDDKNYPRGFSRHGDYTIRESQTLEQFGQACLA
                     LESGERKPATQEEKRFVAVMKGEEVAETDIEKAWLKYRTLTSKTKRIYTLSGNAGSDA
                     GDDFSAAE"
     gene            651..1742
                     /gene="trmA"
                     /locus_tag="PXE26_002392"
     CDS             651..1742
                     /gene="trmA"
                     /locus_tag="PXE26_002392"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HDL5594932.1"
                     /translation="MTLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMR
                     AEFRVWHEEGELYHIMFNPETKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKL
                     FQIDYLSTLSGEIAVSMLYHKSLNEEWVEQANALKSRLEQQGFKVQIIGRANKQKIAL
                     DCDYVEEILPVHGKNYVYRQVENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGN
                     GNFSIALAENFRKVLATEISKSSVQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRA
                     FYRLKGIDLNAYECNTIFVDPPRAGLDQATLNMVQAYERILYISCNPETLAENLQQLS
                     QTHRIEKAALFDQFPYTHHIESGVWLIRK"
     gene            1834..1923
                     /locus_tag="PXE26_002393"
     tRNA            1834..1923
                     /locus_tag="PXE26_002393"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1868..1870,aa:Ser,seq:tga)
     gene            2079..2450
                     /locus_tag="PXE26_002394"
     CDS             2079..2450
                     /locus_tag="PXE26_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaN family protein"
                     /protein_id="HDL5594933.1"
                     /translation="MKYLYIICGFICIGLGIIGAVLPGLPTTPFLLLALFCFTKGSER
                     IRQWFIQTKLYKKYLQEYDEKRAMTMKQKITILAISFPFTLFAFFALPHIGGKIALVV
                     LVIIQYWYFFCKMKTLEPENA"
     gene            complement(2447..3358)
                     /gene="xerC"
                     /locus_tag="PXE26_002395"
     CDS             complement(2447..3358)
                     /gene="xerC"
                     /locus_tag="PXE26_002395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HDL5594934.1"
                     /translation="MTTSNPLFQQTRPYWDFLRIEKQVSPHTLSNYQRQLMAVSELFS
                     QAGIENWEEVESSSVRWMLSQSHKQGLSAKSIGLRLVALRQWFVYLIKIGRMSANPTL
                     GVKSPKVGKHLPKNIDAEQVGQLLAIESDEPSDIRDIAMMELMYSSGLRLSELQGLDL
                     GDMDLSAREVRVQGKGSKERIVPIGSQALKALNRWLEMRLQFKPQDNAVFLNKRGGRL
                     SHRSIQLAMKKWGERQGLESHLHPHKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQ
                     IYTHLDFQHLAKIYDSAHPRARRKQED"
     gene            complement(3425..3715)
                     /locus_tag="PXE26_002396"
     CDS             complement(3425..3715)
                     /locus_tag="PXE26_002396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5377 domain-containing protein"
                     /protein_id="HDL5594935.1"
                     /translation="MSVKTEVLFSNHWNVRVSDPGFEGSPSHYFETVYLTLEAFINGE
                     NVHYEFTRKVEQEVKTHRSFTDVNELFEFLGEYLSPVALGNVGVRIGQLGLA"
BASE COUNT         1169 a          847 c          741 g         1136 t
ORIGIN      
        1 cacagtatat ctccaaatat taaagttaat caaaactcaa tacatttagg taatatacct
       61 taacaaatat aaaaaatata cctcagactg cattgtctat tttaaaagga tcaatatttc
      121 tccttaaaga gttttttgca aaaaatttgc caaatttgac cgctttttta cattaaggca
      181 ttgatttatt cgctgttttt gtttaatgta tgccgatttt attttcccta atttcaaaca
      241 acgaggcatt attatggcag acagtttcag cgttacgcgc cgcttttttg acgataaaaa
      301 ttatccacgt ggtttctctc gccacggcga ttacaccatt cgtgaatcac aaactttaga
      361 acaattcggt caagcttgct tggctttaga aagtggtgaa cgtaagccgg caactcaaga
      421 agaaaaacgt ttcgttgcgg taatgaaagg cgaagaggta gcagaaactg acattgaaaa
      481 agcgtggtta aaataccgca cattaactag taaaacaaaa cgcatctaca ccctttcagg
      541 caatgcaggt agcgatgccg gcgatgactt cagtgctgct gaataatttc taatttaaaa
      601 ccacgaagta attcgtggtt tgttttttca tttgctattt gtggtaaaaa atgactcttc
      661 ctatcgaaca atattccgat cttcttgcaa aaaaaaccga aaatttgacc gctttactca
      721 agccgtttaa cccgcctgcg attgaggtat ttgcctcaaa gccaagccat ttccgtatgc
      781 gggcagaatt tcgagtgtgg cacgaggaag gcgagctgta ccacattatg ttcaaccctg
      841 aaaccaaagc tcgttatcgt gtggatagct tccctattgc cagtgagctg attaaccata
      901 tgatgaccgc attattggcg gaaattaaag gcaatgaact actgactcgc aagctgttcc
      961 agatcgatta tttaagcacc ttaagcggtg aaattgcagt ctcaatgctt taccacaaaa
     1021 gcctgaatga agaatgggtt gaacaggcaa acgccttaaa aagccgttta gagcaacaag
     1081 gtttcaaagt gcaaattatc gggcgtgcca ataaacaaaa aatcgcactg gattgcgatt
     1141 atgtggaaga aattctaccg gtacacggca aaaattatgt gtatcgccaa gtggaaaaca
     1201 gctttaccca gccgaatgcg gaaatgaata ttaaaatgct ggaatgggcg agaaattgca
     1261 caaaaaatag tgaaggcgat ttgcttgagc tttactgcgg caacggcaat ttttcgattg
     1321 ccttggcgga aaacttccgc aaagtgctgg caaccgagat ctcaaaatct tcagtgcaat
     1381 cggctcaata caatattgaa aaaaatggca ttgttaacct acaaattatc cgaatgtcgg
     1441 cagaagaatt tacccaagcg atgaacggtg tgcgagcctt ttatcgctta aaagggattg
     1501 atttaaacgc ctacgaatgc aataccattt ttgttgatcc acctcgtgca gggttagatc
     1561 aagctacatt aaatatggtg caagcgtatg agcggattct ctatatctct tgcaatccgg
     1621 aaacccttgc cgagaattta caacaattaa gccaaaccca tcggattgaa aaagccgctc
     1681 tttttgacca attcccttac acccaccata ttgaaagtgg cgtttggtta attagaaaat
     1741 aaattgtgct gaaaaaaaga acgaataagc agcttttaag atttattact tgacgatgtt
     1801 cgcaataatc tctattattg caacgttttc aacggaggaa tggcagagcg gttgaatgca
     1861 ccggtcttga aaaccggcga gggttaacgc cctccgtgag ttcgaatctc acttcctccg
     1921 ccagtcttta aacctgttga gcaatcagca ggttttttta tttcatttgc aagaaaatca
     1981 gataaaacca ccgcttgaat ccatcgctat aaactggttg aaatcagcct aaagttgctt
     2041 taggataatt gcgattcatt atcaataact taattattat gaaatacctt tatattatct
     2101 gtggttttat ttgtattggt ttaggcatca tcggggcagt attaccgggc ttgccgacca
     2161 caccgttctt acttttggct ctgttctgct ttactaaagg ctcggagaga atccgccagt
     2221 ggtttattca aaccaaatta tacaaaaaat atctgcaaga atatgatgag aaacgggcaa
     2281 tgacgatgaa gcaaaaaatc acgattttag cgatttcgtt tccgtttaca ctatttgctt
     2341 tctttgcact gccccatatc ggtgggaaaa ttgcgttagt agtgttagtg ataattcaat
     2401 attggtattt cttctgcaaa atgaaaaccc ttgaaccgga gaatgcctaa tcttcctgct
     2461 tccgccttgc tcttgggtgg gcagagtcat aaattttagc taagtgttgg aaatccagat
     2521 gcgtataaat ttgagtggtg gacaggctac tatgacccaa taattcctga accgctcgca
     2581 aatcaccgct tgcctctaac atatgagtcg caaaagagtg acgtaattta tgtggatgca
     2641 gatggctttc cagcccttgt cgctcacccc atttcttcat tgccaactga atggaacgat
     2701 gagataaccg cccacctcgc ttattcagaa acaccgcatt atcttgcggc ttaaattgca
     2761 aacgcatttc taaccagcga tttaacgctt ttaacgcttg cgagccaatc ggcacaattc
     2821 gctctttgct acccttacct tgcacccgta cttctcgtgc cgataaatcc atatcgccta
     2881 aatccagccc ttgtaattcc gataaacgca agccggaact atacatcagc tccatcatcg
     2941 caatatctcg aatatcgctc ggctcatcac tctcaatcgc cagcaactgc ccgacctgct
     3001 ccgcatcaat atttttcggc aaatgcttac ctactttcgg cgatttcacc cctaaagtcg
     3061 ggtttgccga cattcgcccg attttaatca aatagacaaa ccattgccgt aacgccacca
     3121 agcgtaagcc gatacttttc gcactcaacc cttgcttatg gctttggctt aacatccaac
     3181 gcaccgagct actttcgacc tcttcccaat tttcaatgcc tgcttgcgaa aaaagctcgc
     3241 tcaccgccat taattggcgt tgataattgc ttaaggtatg cgggctaact tgcttttcaa
     3301 tgcgtaagaa atcccaatag gggcgggttt gttggaaaag agggttggaa gtggtcataa
     3361 acgtaataac aagcggttaa tttttaggaa aatgttgcaa gggcaaaaga tttgcccttt
     3421 gagattaggc tagccccaac tgaccgatac gcacgccaac attaccaagt gcaacagggc
     3481 ttaaatattc gccgagaaat tcaaacaatt cattcacatc agtaaaactg cgatgagttt
     3541 tcacttcttg ctccacttta cgagtaaatt cataatgtac attttcgccg ttaataaagg
     3601 cttccagcgt taaatatacg gtttcaaaat agtggcttgg cgagccttca aagcccggat
     3661 cactcactcg aacattccaa tgattactaa ataaaacttc ggtttttact gacattgtgt
     3721 tttccttctt cctataagta cgtacattat tttaatcaag atagattgaa tttgccactt
     3781 ttcctagtca gaatcgaggc aaatcttatt tggtttgtcc tcttatatct ttccctcaaa
     3841 atatgatctt ggtcaaaaaa tactgacttt taactcttaa taaagttaaa tat
//
LOCUS       DANLZD010000184         3831 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.185, whole genome shotgun sequence.
ACCESSION   DANLZD010000184 DANLZD010000000
VERSION     DANLZD010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3831
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.185"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..379)
                     /locus_tag="PXE26_002397"
     CDS             complement(<1..379)
                     /locus_tag="PXE26_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594936.1"
                     /translation="MTLETFNQQKAKFHEQEKAVLAIQTELDKAKNILEALQNEKAEF
                     VARQKTNLANIGTLSADEYVEIKNKNSGLQARIEYYQALIVDLENKCYAEQEILFQQQ
                     NELKQIRRIILLEKAEVLFNQFIE"
     gene            complement(389..595)
                     /locus_tag="PXE26_002398"
     CDS             complement(389..595)
                     /locus_tag="PXE26_002398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family transcriptional regulator"
                     /protein_id="HDL5594937.1"
                     /translation="MENTPAKQRFMKIDEVSAVTTLSETQIYRKMKAGDFPQSISIGA
                     NSKVWLESEIQQWIQRKIEQHRNQ"
     gene            complement(1065..2279)
                     /locus_tag="PXE26_002399"
     CDS             complement(1065..2279)
                     /locus_tag="PXE26_002399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5594938.1"
                     /translation="MTATKKPLSDTLLKNLKYSPNAKPIADSNGLFILAQKKAKVWIY
                     SYISPKTGKRSTKNRIGSYPQMSLAEARLKRDELNTLVLQGLDPFEHLAKMQREAKEK
                     QESIQSFAYKWADWKLSKGKCKPKTMEKCLQRLENHLFPRFEGYTLEDFTLTDTINRL
                     TDLDRIMPDTLHRIAGNLIEILDYAVLCGRINFNPISVIKKAFSSVSTTHQPAIMPEE
                     LAEFMQDLQKSNRTPQIKLLVEWQLLNILRPFEAVAVQWSDIDWETKTLNIPADRMKG
                     GKNPHSVPLTKQAIAILEEMKKYNGHHKHIFTHRTDRNKPANSQTVNNAIKRLSGGKY
                     KGLLVAHGLRSIASTYLHERFTTETLVIEACLSHTNKDTVMSAYHRKNWLDRRRGIMQ
                     EWADFVEQCKSI"
     gene            complement(2482..2557)
                     /locus_tag="PXE26_002400"
     tRNA            complement(2482..2557)
                     /locus_tag="PXE26_002400"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2522..2524),aa:Ile,seq:cat)
     gene            complement(2651..3388)
                     /gene="pgeF"
                     /locus_tag="PXE26_002401"
     CDS             complement(2651..3388)
                     /gene="pgeF"
                     /locus_tag="PXE26_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HDL5594939.1"
                     /translation="MDKIIPNWNVPKHIHALTTLRTGGVSKPPFDSFNLGDHVNDEPQ
                     DIAQNRALLVEKFQLPQAPLFLTQTHSTRVIELPYSGDNIKADAIYTNQPNQVCLVMT
                     ADCLPVLFASQDGSEIAAAHAGWRGLCDGILEATVEKFNCPPHEISAWLGPAIGPNAF
                     QVGSEVADQFCAFDPRAKEALIEDSTTSGKFLGNLYQIATQRLNKLGITAISGGEYCT
                     YSQPELFFSYRRDKQTGRMATLIWRTE"
     gene            complement(3420..3806)
                     /locus_tag="PXE26_002402"
     CDS             complement(3420..3806)
                     /locus_tag="PXE26_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDL5594940.1"
                     /translation="MTVIHTENAPAAIGPYVQAVDLGNMVLTSGQIPVNPETGEIPSD
                     IVQQTRQSLNNVKAIIEQAGLTVADIVKTTVFVKDLNDFAKVNAEYQAFFQENEHPNF
                     PARSCVEVARLPKDVGIEIEAIAVRR"
BASE COUNT          959 a          734 c          815 g         1323 t
ORIGIN      
        1 gttcaataaa ttgattaaat aatacttctg ctttttctaa taaaattata cgtctgattt
       61 gttttagttc attctgctgt tggaataata tttcttgctc tgcgtagcat ttattttcta
      121 aatcaacaat caacgcttga taatattcta tgcgtgcttg taaaccacta tttttatttt
      181 tgatttcaac atattcatct gctgaaagcg tgccgatatt ggctaaattc gttttttgcc
      241 gtgcgacaaa ttccgctttt tcgttttgca atgcctcaag aatatttttc gctttgtcta
      301 attcggtctg aatagctaaa acggcttttt cttgttcgtg gaatttagct ttttgttggt
      361 taaatgtttc aagtgtcata atttgccctt attggttgcg gtgttgttca attttgcgtt
      421 gaatccattg ctggatttca ctttctagcc atactttgct atttgcccca atactgatac
      481 tttggggaaa atcgccggct ttcattttgc gataaatctg cgtttctgaa agcgtagtta
      541 cggctgaaac ttcatctatt ttcataaatc gctgttttgc tggtgtgttc tccattttgt
      601 tttactccgt aaaaatttgc tttggcgtgc tattgcctgc taacgtgtga aagaataaat
      661 catcttggat tttttgctat ttgttagggc tgtgaaagga gattttacag attagagggg
      721 cttaattctg atttggaaaa cttgcaagcg gttatttttc tctgattttt tgcaagtttt
      781 cagcggttct ttcatcgttc tgtcatcgag tttttaaaag tggtgtttct gcctgcgtaa
      841 atttgcgttt tcttgcgtaa aattgcgtaa taaaaaacgg ctatatgaaa gtttttcacg
      901 ctatacgggg caatgtttgg gcttaatttt gcatttgcgt agaaatcgag actttaagtg
      961 tgcgggcgag gcgtgggata gacggcacgg gctgggagct gataggaaaa aatgaaaatt
     1021 tttcatcaag caaaaagaaa ggcggattgc tccgcctttg tcatttaaat gctcttgcat
     1081 tgttctacaa aatccgccca ttcctgcatt attccacgtc tgcggtctag ccagttttta
     1141 cggtggtatg cactcattac ggtgtctttg ttcgtgtggg ataaacaagc ctcaattact
     1201 agcgtttcag tagtaaaacg ttcgtgtaaa taggtgctgg caatgcttct taaaccgtga
     1261 gccactaaaa gccctttata ttttccaccg cttaagcgtt ttattgcatt attcacggtt
     1321 tggctattag ccggtttgtt tcggtctgtt cggtgtgtaa aaatatgttt atggtgtccg
     1381 ttatatttct tcatttcctc taggattgcg atagcttgtt ttgttagcgg tacagaatgc
     1441 ggattttttc cgcctttcat tctatctgcc ggaatgttga gcgtcttagt ttcccaatct
     1501 atatcgctcc attgcaccgc tacggcttca aacggtctaa gaatattcaa gagttgccat
     1561 tcaactaata atttaatttg aggcgttcta tttgatttct gcaagtcttg cataaattcg
     1621 gctaactctt cgggcattat tgctggctgg tgtgtcgtgc ttacgctgga aaacgccttt
     1681 ttaatgacgc tgattgggtt aaaattaatt ctcccacaca ataccgcata atcaagaatt
     1741 tctattaaat tccctgctat tctgtgcaaa gtgtcgggca ttatccgatc taagtccgtt
     1801 aagcggttga ttgtatcggt taaggtaaaa tcttccagcg tatagccttc aaaacgtggg
     1861 aataaatgat tttctaaccg ctgtaagcat ttttccattg ttttaggctt gcattttccc
     1921 tttgatagct tccaatcagc ccatttatag gcgaaagatt gaatagattc ttgcttttcc
     1981 ttagcttctc tttgcatttt ggctaaatgc tcgaaagggt ctaagccttg taaaacaagg
     2041 gtatttagtt cgtctctctt taagcgtgct tcggctaagc tcatttgcgg atagctaccg
     2101 attctatttt ttgtgcttcg cttgcctgtt ttggggctga tatagctata aatccatact
     2161 ttcgcttttt tctgtgcaag aataaatagc ccgttgctgt ctgcgatagg cttcgcattt
     2221 ggggaatatt tgagattttt tagtaatgtg tctgaaagtg gttttttagt tgcagtcatt
     2281 tcttctaatc cttgatatat aagggtttat cgaagtttat gatccctaaa ttttcccgtt
     2341 ttcaaaatag ggatcatttt agggatcata aacactaaga tacaatgcaa ctaaagaaga
     2401 caataagaga ctataaaaga atctaagttc ttgattttat agtaaatttg agacaatgaa
     2461 agacaatatg caacgcttag atggtccccc cagccggact tgaaccagcg accaagcgat
     2521 tatgagtcgc ctgctctaac cactgagcta tggggggatt tgaaaagtgg ttggaattat
     2581 agagaaaaac cgagtagtcg tctagaggca gaagattact cggttaatta ttgaacgaga
     2641 gaaaataggg ttattctgtt cgccaaatta aggttgccat tcgcccggtt tgtttgtctc
     2701 ggcggtagga aaaaaacagt tctggttggc tgtaggtgca atattcaccg cctgaaatgg
     2761 cggtaatgcc taatttattc agacgttggg tggcaatttg gtaaagattt cctaaaaatt
     2821 taccgcttgt agtgctgtct tcaataaggg cttctttcgc tcttgggtca aaagcacaga
     2881 attggtctgc cacttcactc ccgacttgaa aagcattcgg tccgatagcc ggccctagcc
     2941 aagctgatat ttcgtgtggc gggcagttga atttctctac cgtcgcctct aatatgccat
     3001 cgcataaccc acgccagccg gcgtgtgccg ccgcaatttc cgacccgtct tggctggcaa
     3061 ataataccgg caaacaatct gcagtcatca ctaagcagac ttggtttggt tgattggtgt
     3121 aaatcgcatc ggctttaata ttatcacctg aatagggaag ttcaatcact cgggtgctgt
     3181 gagtttgggt taaaaacagc ggagcttgtg gtaattgaaa tttctcaacc aataaagcac
     3241 gattttgagc gatatcttgt ggctcgtcat taacgtgatc acctaagttg aaactgtcaa
     3301 aaggcggttt gcttactccg cctgttctta aggtcgtcag tgcgtgaata tgtttaggca
     3361 cattccaatt tggaataatt ttatccattt gcaaaaaatc tcaagaaaat gaccgcttgt
     3421 tatcggcgta ctgcaatcgc ttcgatctca atgccaacat cttttggtaa acgagccact
     3481 tctacgcaag aacgagccgg aaaattaggg tgttcgtttt cttggaagaa ggcttggtat
     3541 tccgcattta cctttgcgaa gtcgttaaga tctttgacaa atacggtggt ctttacaata
     3601 tcggcaacgg ttaagccggc ttgttcgata atggctttca cgttgttcag agattggcgg
     3661 gtttgttgca caatatcact cgggatttcg ccggtttcag gattcacggg aatttgccca
     3721 gaagttaaaa ccatattgcc taaatcaact gcttgcacat aaggcccaat cgctgccggt
     3781 gcattttctg tgtggataac tgtcatcttg tgttcctctt aatgaaaaat a
//
LOCUS       DANLZD010000185         3678 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.186, whole genome shotgun sequence.
ACCESSION   DANLZD010000185 DANLZD010000000
VERSION     DANLZD010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3678
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.186"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..724
                     /locus_tag="PXE26_002403"
     CDS             <1..724
                     /locus_tag="PXE26_002403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594941.1"
                     /translation="IVKWLWAEFWDKNIISMTLRIDGYRNANLWHYLRYQSRIEVLYK
                     IANEHPNLLPLLAYVKPEYWKCSDLFSYQNWVRSRDKQPFILYAKCQDKMLCESKGQW
                     RWLKKQSRIVVDQCFLHVNQWQLLTEIQMPFKIPVCVICFILTNFSMISCELDRSRQR
                     RLLSIFIQYIYHYWKDNGFRQLKIHLSHLRVLFQDIEDYMIHEGYLHGIPQTWQHLVY
                     HLNLINSNTSKVEPAQFASAMN"
     gene            complement(675..1502)
                     /locus_tag="PXE26_002404"
                     /pseudo
     CDS             complement(675..1502)
                     /locus_tag="PXE26_002404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
     gene            complement(1606..2070)
                     /locus_tag="PXE26_002405"
     CDS             complement(1606..2070)
                     /locus_tag="PXE26_002405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArdC family protein"
                     /protein_id="HDL5594942.1"
                     /translation="MMNTQQPKFDLYQHITDRIIAALEQGTAPWLKPWSHPECNMALP
                     RNAVSNRLYSGINTLLLWIATAEHGYKQCKWITAKKANELGGYIRKGEKATVVMNYRP
                     NEREKLDEEGNIVYDEEGNPEMEQHFFIAKHNLFNLDQCENLPAELYDPVIP"
     gene            2279..2542
                     /locus_tag="PXE26_002406"
     CDS             2279..2542
                     /locus_tag="PXE26_002406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme-like superfamily protein"
                     /protein_id="HDL5594943.1"
                     /translation="MRPVTRNNRGTSFDPRHNKYINTLATALLARWHIEQFSERNIPV
                     NDENLYMAHNIGLDGFHRALLGQSTRKDIENMRKNGMKPWMSI"
     gene            complement(2626..3651)
                     /locus_tag="PXE26_002407"
     CDS             complement(2626..3651)
                     /locus_tag="PXE26_002407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
                     /protein_id="HDL5594944.1"
                     /translation="MTAGDTPHDTLKTLVGALKDTREEARKANERGDRFEQEVLRLQA
                     REAEVDSRIAGEVESRVESRLAAAWDGFNRQIEELKGRVQSGNQQQKEAEAIPVGGAS
                     SGFGTESAGQTGNVDNNGIRWVDPDDMVVTDEQGKPVTGNYSGKTKTGFPSPFKAEGE
                     SSNTGTALNNNAGTENMTGNTQIQQIKRTPYYTIPENSTLMGSTAMTALLGRVPIQGA
                     VTDPFPFKVLIGRENLIANGIDLPDVEGAIVSGTSTGDWTLSCVRSEVTSITFVFADG
                     RISNGRASGESRAVKRNQASNLTPFCLTVSLSGFNDIPHSDGNPGFLTMSAVDYVDVY
                     LMSHLAR"
BASE COUNT         1059 a          778 c          712 g         1129 t
ORIGIN      
        1 gattgttaag tggttatggg ctgaattttg ggataagaat attatctcga tgacacttag
       61 aattgatggt tatagaaatg ctaacttatg gcattattta cgttatcaat cacggattga
      121 ggtattgtat aaaatagcaa atgaacaccc gaatctacta ccattattag cctatgttaa
      181 acctgagtac tggaaatgct cggacttatt tagttatcaa aattgggtaa gaagccgtga
      241 taaacagcct tttattttgt atgctaaatg ccaagataag atgttatgtg aatcaaaggg
      301 gcaatggaga tggttaaaaa aacagtcgag aatagttgta gatcaatgtt ttctacatgt
      361 taatcaatgg cagttattaa cagaaattca aatgcctttc aagatcccag tatgtgtcat
      421 atgtttcata cttactaatt ttagcatgat cagctgtgag ttagatcgat ctagacaacg
      481 tcgattactc tctattttta ttcaatatat ctatcattat tggaaagata atgggtttag
      541 acaattaaag atacatcttt ctcatctgag agtgcttttt caagatattg aagattacat
      601 gatacatgag gggtatttac atggtatacc tcagacttgg caacatttgg tttaccacct
      661 caaccttata aattcaaata catcaaaggt agagccagca caatttgctt cggcaatgaa
      721 ttaactggtc gctgtaccag cttattcaca tcgccaccga ttgctagcgt aacactatgc
      781 tgatcggctt tctgcacgat ctcagataaa agcccggctt tatcgttatg cccagacatt
      841 gcatacatca gtgaagaaat gacttctgga tactgtccca gccaatcaaa cgcagacttg
      901 ggaatgagct gatttgcaag gaatcctcct agcacgggat gaagatggta gtctcgacct
      961 ttgatgtatt tgaatttata aggttgaggt ggctgtccat tccaagcaaa ccaacgagag
     1021 ccgtctttaa gagtgatttc aatatcaacc acaactttgc caatatcatg aaccaaggca
     1081 agataaattg cggcagcagt ccaagcatct cgttgctttg attgttcttc gggagctaca
     1141 ttcgggggca aaatatagct ttgacgaact ttagctgaaa aagcaataac ttctaaaccg
     1201 tgatcaagca ttccaccgat atgtgaatga tggtgtgatt cagaagctgg taatagttga
     1261 accatctcag cgtaacgttc tattggctgc tgataaagta cctcaaacat ttgacggttc
     1321 attgatacct gttgccaaag tagcccaaga tatttttgtc gtaattctgt attaagtaat
     1381 tgagaggctt tttccgggta taaccaccct tcattatctt gctcaataga aaaaatagta
     1441 tcggatttga ccgcactttg agatttattt ttaccaaaaa attttttgaa cattgaacgc
     1501 attggaagag accgaaaata tgaatgctgt attgaatgaa agccgtttag ccctttgccc
     1561 ttttgggtaa gacctttccc cttggaaagg ttactctgat cccccttagg ggattacagg
     1621 atcgtacagt tccgccggta aattttcaca ctggtctaaa ttgaacagat tgtgcttagc
     1681 aatgaaaaag tgttgttcca tttccggatt tccttcctcg tcatacacaa tatttccctc
     1741 ctcatcgagt ttttctctct cattaggacg gtagttcatc acaacagtag ctttttcccc
     1801 tttacggata tatccgccga gttcattggc ttttttcgcc gtaatccact tacactgttt
     1861 gtagccgtgt tcagcggtag caatccaaag caataacgta ttgataccgg aatacagacg
     1921 gttagaaacc gcattgcgag gtaatgccat attgcattcc ggatggctcc acggttttaa
     1981 ccacggagct gtaccttgtt ccaatgcagc aatgattcta tcagtaatat gttggtataa
     2041 atcaaattta ggttgttgag tgttcatcat gtgtttctcc aaagtttggg taaaaaaatg
     2101 gggaaacacg gttaccctat ggggaacttg tttccccgat gggtagttta taaaatttca
     2161 atggccacaa tttttctaga atcatcaaag ccaacagaac tgcctatggc gtagtaatta
     2221 cgaatagtct gttcatcggc attgattagc agatacctat cgaggaagag agattgggat
     2281 gagaccggta acgagaaata atcgtggaac cagttttgac cctcgtcaca ataaatacat
     2341 caatacattg gcaaccgcat tattggcacg ttggcatatt gagcaattct ctgagcgtaa
     2401 tatcccagtc aatgatgaaa atctctatat ggctcacaat attggcttag atggtttcca
     2461 tcgagcgtta ttagggcaat ctactcgtaa agacattgag aatatgcgta agaatgggat
     2521 gaaaccttgg atgtccattt agctctgttt tcaaatgacc taatccagtt tgttccggag
     2581 agagtaccga aattttgcac tctttcatcc gtggtgtatc aaacttcaac gtgctaaatg
     2641 agacattaaa tatacatcaa cataatctac cgcactcatc gttaagaaac cgggattccc
     2701 atcagaatga ggaatatcgt taaagcccga taaggagacg gttaaacaaa atggtgttaa
     2761 attacttgct tgatttcgtt tcacagctct gctttctcca ctcgctcgcc cattcgaaat
     2821 acgaccgtct gcaaacacaa aggtaatgct cgttacctca gaacgaacgc aagatagcgt
     2881 ccaatctccg gttgatgtac cggatacaat cgccccctca acatcaggta aatcaatgcc
     2941 attggcaatt aaattttctc gcccgattaa tactttaaac ggaaacggat ctgtcacagc
     3001 accttgaata ggtacacggc ctaacaatgc cgtcatcgca gtagaaccca ttaaagtcga
     3061 attttcggga atagtgtaat aaggtgtacg ctttatttgc tgtatctgag tattaccagt
     3121 catattttct gtcccagcat tattatttaa tgctgtccca gtatttgaac tttccccctc
     3181 tgctttaaaa gggcttggaa agccggtttt tgttttcccg gaataattgc ctgtaaccgg
     3241 tttaccttgt tcatcggtta ccaccatatc atcaggatcg acccagcgaa tgccattgtt
     3301 atctacattc cctgtttgtc ctgctgattc agtcccaaag ccagaagaag cccctcctac
     3361 agggattgcc tctgcttctt tctgctgctg attaccactt tgaacccgac ctttcagttc
     3421 ttcgatttgg cgattaaatc catcccaagc agcagccaaa cggctttcta cacgactttc
     3481 tacttcaccc gcaatacgag aatccacttc ggcttctctt gcttgtaagc gtaatacctc
     3541 ttgctcaaag cgatcaccac gctcatttgc tttacgagct tcttcacgag tatcttttaa
     3601 tgctcctacc aacgttttta atgtatcgtg aggcgtatct cctgcagtaa tacctaatgt
     3661 attcgcctcc tcatcact
//
LOCUS       DANLZD010000186         3658 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.187, whole genome shotgun sequence.
ACCESSION   DANLZD010000186 DANLZD010000000
VERSION     DANLZD010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3658)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3658)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3658
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.187"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..1011)
                     /locus_tag="PXE26_002408"
     CDS             complement(<1..1011)
                     /locus_tag="PXE26_002408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen chain length determinant protein
                     WzzB"
                     /protein_id="HDL5594945.1"
                     /translation="MADSVKSHEQSSDEIDLIEIFRALWDKKWWIVITTFITTLLAGI
                     YAFTAKEQWTSKATVIAPKLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRL
                     AQSQDTKNEFFITSNVYKTLAEGKDEQGQRTVLSNLSNENTSFIIPDAKKDPNAIGRT
                     LSFSAETPMEAQDTLGKLVQFINSKAFAVELEDFLVDFQNVLTALQYEKSLIQEDLSV
                     NKSVQLENLNKAYETAQKAGIKEYSKAFNQSDASNIAAALSDTKISLSDSKLADSSYL
                     FMLGEKYLKAQIDVANEKGVVYPPRYYQIDYQLKQLEPLFEKTKTVKTQTFSYQASPD
                     YPV"
     gene            1160..1501
                     /gene="erpA"
                     /locus_tag="PXE26_002409"
     CDS             1160..1501
                     /gene="erpA"
                     /locus_tag="PXE26_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005706127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HDL5594946.1"
                     /translation="MSDIQIPLIFTDAAARKVKSLIEGEENPNLRLRVYITGGGCSGF
                     QYGFTFDDQVNEGDLTIENQSVGLVVDPMSLQYLIGGTVDYTEGLDGSRFVVNNPNAS
                     STCGCGSSFSI"
     gene            complement(1606..1929)
                     /gene="yidD"
                     /locus_tag="PXE26_002410"
     CDS             complement(1606..1929)
                     /gene="yidD"
                     /locus_tag="PXE26_002410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HDL5594947.1"
                     /translation="MVKTHSPEQKAGTTESINQPPRLSLLAKILLLPIYFYRYAISPL
                     IGPRCRFYPTCSTYAVEAIKIHGAIKGGYLAFKRILRCNPLSEGGEDPVPLCCKGNCK
                     HNDKK"
     gene            complement(1878..2252)
                     /gene="rnpA"
                     /locus_tag="PXE26_002411"
     CDS             complement(1878..2252)
                     /gene="rnpA"
                     /locus_tag="PXE26_002411"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HDL5594948.1"
                     /translation="MKKLNFSRELRLLAPVQFKAVFEEPLRASTPQMTLLARENNLEN
                     PRLGLTVAKKHLKRAHDRNRIKRIVRESFRLKQHELPNFDFVFVAKGGIGKLDNATLF
                     ETLEKLWSRHIRLSKKPAQQNP"
     gene            complement(2288..2422)
                     /gene="rpmH"
                     /locus_tag="PXE26_002412"
     CDS             complement(2288..2422)
                     /gene="rpmH"
                     /locus_tag="PXE26_002412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011508608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HDL5594949.1"
                     /translation="MKRTFQPSVLKRARTHGFRARMATKNGRQVLARRRAKGRKSLSA
                     "
     gene            2659..3621
                     /gene="hemH"
                     /locus_tag="PXE26_002413"
     CDS             2659..3621
                     /gene="hemH"
                     /locus_tag="PXE26_002413"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HDL5594950.1"
                     /translation="MNQPQQIGILLANLGTPDEPTPSAVKRYLKQFLSDPRVIDLPKF
                     KWQAILNCIILPRRSPKVAKLYQSVWSEEGSPLLAISRQQQRAVQRYFDAKGKNVVVE
                     LGMSYGNPSIESATDNLIKQGVERIIVLPLYPQYSSTTTASVFDAFANGLKAQRKIVP
                     FDFIHSYHNDPLYIQALANSIDVKPDELLLFSFHGIPKRYETEGDFYAKHCQETAELV
                     AEKLGLPREKWYLSFQSRFGDEEWLQPYTDQTLESFPQKGIKKVAVVCPGFSADCLET
                     LEEITEENRENFEHAGGESYRYIPALNASGDHIKALVKLIEAKI"
BASE COUNT         1109 a          695 c          722 g         1132 t
ORIGIN      
        1 tacaggataa tccggcgaag cttggtaact aaaagtttgt gttttaactg tctttgtttt
       61 ttcaaataac ggctctagct gtttaagttg gtaatcaatt tgataataac gtggtggata
      121 aacaacacct ttctcattag ccacatcaat ttgagccttt aggtattttt cccctaacat
      181 aaataaatat gaactatctg ctaattttga atcagaaagg gagattttag tatcacttaa
      241 agctgctgca atatttgatg catctgattg attaaatgct tttgaatatt ctttaatacc
      301 tgctttttgt gcagtttcat aggctttatt taagttttcc aactgaaccg acttattcac
      361 agataaatct tcctgaatta atgatttttc atattgtaat gcagtaagca cattttggaa
      421 atcgactaga aaatcttcta attcaacagc aaatgctttg ctattaatga attgaaccaa
      481 cttaccaagg gtgtcctgcg cctccatagg tgtctctgca gaaaaagata gtgtacgacc
      541 tattgcatta ggatctttct ttgcatcagg aataataaag ctggtatttt cattactcaa
      601 attggataaa actgtgcgtt gcccctgctc atcttttcct tcagctaacg tcttatacac
      661 attggaagtg ataaaaaatt catttttagt atcttgagat tgtgctaatc ggttaaaatt
      721 gttgaacaaa ctcgcagaca atgcatttgg atcaacagga tctacacgca aaatccgact
      781 atattctctg cgaacattta aatactcacc taactctgtt aatttagggg caataactgt
      841 tgccttagac gtccattgct cttttgcagt aaatgcataa ataccagcaa gtaatgtggt
      901 aatgaatgtt gttataacaa tccaccattt tttatcccat agagcacgaa aaatctcaat
      961 taaatcaatc tcatccgagc tttgctcatg actttttact gaatctgcca tagtttcctc
     1021 taaaatttgc atgtttctgt acagcattat acataatttt cttatttcca ctgcattcat
     1081 ttactctttt ttaagattgc acttcctatg taattattag ataatatcca atcacagtaa
     1141 aattttgatc taaaacaaaa tgagcgatat tcaaattcct ttaatcttta ctgatgcggc
     1201 ggctcgtaaa gtaaaaagct taattgaggg cgaagagaac ccgaatcttc gcttgcgtgt
     1261 gtatattacg ggtgggggct gtagtggatt ccagtatggg ttcacctttg atgatcaagt
     1321 caatgaggga gaccttacca ttgagaatca aagcgttggc ttggtggttg acccgatgag
     1381 cctacaatat ttaattggtg gcacggtgga ttataccgaa gggctggacg gctcacgttt
     1441 tgtcgtgaat aatccaaatg caagctcaac ctgtggttgt ggttcttcct ttagcattta
     1501 attcactcga attattgcct tattcaatat cagtctcaca agtaaatttt ttactaaaaa
     1561 tgaccgtttg tattaaacaa aatagcctaa cttattgagt ttaggctatt ttttatcatt
     1621 atgtttgcag ttgcctttac aacaaagtgg gacaggatct tcgcctccct cactcaaagg
     1681 gttgcaacgc agaatacgct taaacgctaa atacccacct ttaattgctc cgtggatttt
     1741 aatcgcttcg accgcatagg tggagcaggt tgggtaaaat cggcaacgtg ggccaatcaa
     1801 tgggctgata gcatagcgat agaaataaat cggtagcaat agaattttgg ctaataggct
     1861 gagacgaggt ggctgattta tggattctgt tgtgccggct ttttgctcag gcgaatgtgt
     1921 cttgaccata gtttttccaa tgtttcaaac agcgttgcgt tgtctaattt gccaatgccg
     1981 ccttttgcca caaatacaaa atcgaaattc ggcaattcgt gttgcttgag gcgaaaactt
     2041 tcacgcacta tccgcttaat gcgattacgg tcgtgagccc gttttaaatg ttttttggca
     2101 acagttaagc ctagacgagg attttctaga ttattctctc tagcaagaag agtcatttgg
     2161 ggtgtgctgg ctcgaagtgg ctcttcaaac accgccttaa attgaacggg agctaacaaa
     2221 cgtagctccc gagagaaatt tagcttcttc acacttaatc agaaaggtgt tttggctggt
     2281 tctgcaatta tgcagataaa gatttacgac ctttagcacg acgacgcgct aacacttgac
     2341 gaccgttttt agtagccata cgagcacgga aaccgtgagt acgagcacgt tttaatactg
     2401 atggttgaaa tgtacgtttc attgcttatc tacctaaaat ttaaaaagtt ggcataaaat
     2461 ggtttctgcc aaacaaggac cataaaaaag agttgcaatt ctacaggcaa ttaaaataaa
     2521 aagcaagaaa caatccaagc acaactcggg ttgtttgcaa aatttttgaa aaatacgacc
     2581 gcttgttata atcgcagaaa tttatattgg tttgtggcat aatcgaaaaa atattaacta
     2641 ttgatgagaa atagaacaat gaatcaaccc caacaaatag gtattttgct ggctaattta
     2701 ggtacgccag atgaacccac gccaagtgcg gtgaagcgtt atttaaagca atttttaagc
     2761 gatcctcgtg tgatcgatct accaaaattt aaatggcaag caatcctaaa ctgcatcatt
     2821 ttgccaagac gttcgccaaa agtggcaaaa ttatatcaat cagtatggag cgaagaaggc
     2881 tcaccgttat tggcgatttc tcggcaacaa caacgagcgg tacaacgcta ttttgatgcc
     2941 aaaggcaaaa atgtggtggt ggaattggga atgtcttacg gcaatccaag tattgaaagt
     3001 gcgaccgata acctcatcaa gcagggggtt gagcggatta ttgtgctacc gctttatccg
     3061 caatacagta gcactactac cgcttcggtg tttgatgcgt ttgccaacgg tttaaaagca
     3121 cagcgtaaaa tcgtgccgtt tgattttatt cacagctatc ataacgatcc gctttatatt
     3181 caagcgttgg ctaactctat tgatgttaaa cctgacgagt tattactgtt ttcatttcac
     3241 ggcattccta aacgttatga aacggaaggt gatttttacg ccaagcattg ccaagaaaca
     3301 gcagaattag tggctgaaaa gctaggtctg ccaagagaaa aatggtattt gtctttccag
     3361 tcccgttttg gtgatgaaga gtggctacag ccttataccg atcaaaccct tgaaagcttc
     3421 ccacaaaaag ggataaaaaa agtggctgtc gtttgcccgg gcttttcagc agattgtttg
     3481 gaaaccttag aagaaattac agaagaaaac cgcgagaact ttgaacatgc cggcggagaa
     3541 tcttatcgct acattccagc gttaaatgcg agtggcgatc atatcaaggc attagtaaaa
     3601 ttaatcgaag cgaaaatata atataatttg ggcggataat aaatccgccc atttttat
//
LOCUS       DANLZD010000187         3654 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.188, whole genome shotgun sequence.
ACCESSION   DANLZD010000187 DANLZD010000000
VERSION     DANLZD010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3654
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.188"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            5..889
                     /locus_tag="PXE26_002414"
     CDS             5..889
                     /locus_tag="PXE26_002414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5594951.1"
                     /translation="MFALTATAVFAASAFAKDVTIPTARGEVTFKETPSKIAVFDTGS
                     LDTLQALGVKIDGMPEFKVLSYLKPSADKAVNVGTVFEPDLEALNSLNPDLIIVGTRT
                     AKKFDEVSQIAKTIDMTDNGDKLIESGLQRLDSFGKLFNKEAETEKLKAEINTLLDQT
                     KAAVKGKGNGLIILVNGGKISAFGSGYRLSWIHDNLGIPMADSSIKNTGHGQPVSFEF
                     IQKLNPDWLFVLDRIAAIGQEGQSAQQVLDNELVRQTKAWKNGNIVYLSAASYLAPGG
                     YEQMKTDLTNIKTAFEKK"
     gene            983..1951
                     /locus_tag="PXE26_002415"
     CDS             983..1951
                     /locus_tag="PXE26_002415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDL5594952.1"
                     /translation="MFSFFRLNLFLLILLIPISASVGVADFHWSEIFHSSEQSQIFFI
                     SRLPRTLAVILVGATLAVAGMVLQIVLKNRFIEPSMIGTSQSAAIGILLASLLFPTSA
                     LLLKMSIATLSALMGMGLFMLLIRQLPPHQQLMLPLIGIVFGNVIEAISTFIAYETDS
                     LQVLSIWFSGDFSGILAGRYELLWITAILAVVVYVMADQLTIAGLGENISTNLGINYK
                     QMTWLALIVVAMITAIVVVTVGQIPFIGLVVPNIVSRIAGDRLRKNLPAVVVLGANLV
                     LICDILGRAINAPYEVPISTIFGIIGTVIFLYLLLKEKRAEEKARG"
     gene            2004..2880
                     /locus_tag="PXE26_002416"
                     /pseudo
     CDS             2004..2880
                     /locus_tag="PXE26_002416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607611.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
     gene            2900..>3654
                     /locus_tag="PXE26_002417"
     CDS             2900..>3654
                     /locus_tag="PXE26_002417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005567524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5594953.1"
                     /translation="MITVKNLHHKIGNATILNNINLTIPNGGITALIGANGAGKSTLL
                     SLIARLQPIQQGEIHLNELNIANTASQTIARQLAILTQDNVIHSRITVKDLLLFGRYP
                     HHQGRITSHDNAIVEEALVRFDLSTFSHRFLNELSGGQRQRALIAMTFCQQTDHILLD
                     EPLNNLDMFHARELMKLLRKLTDELALTTIMVVHDINIAAAYADTIIAMKDGGIKMIG
                     TPKEIITTENLKTVFNLDAEVLECQGKPLVIHH"
BASE COUNT         1027 a          703 c          741 g         1183 t
ORIGIN      
        1 agccttgttt gcattgaccg caactgctgt gtttgctgct tctgcatttg ccaaagatgt
       61 tactattcca actgcacgtg gagaggttac tttcaaagaa accccgtcta aaattgccgt
      121 gtttgacacc ggaagtttgg atactttaca agccttaggt gtaaaaattg acggtatgcc
      181 tgaatttaag gtgctttctt atcttaaacc gagtgcagac aaagcggtga atgtcggtac
      241 ggtatttgag ccggatttag aagcgttaaa ttctttaaat ccggatttga tcattgttgg
      301 cacacgcaca gcaaaaaaat ttgatgaagt cagccaaatt gcgaaaacca tcgacatgac
      361 ggataatggc gataaattaa tcgaaagcgg attacagcgt cttgattctt tcggcaaatt
      421 atttaataaa gaagcggaaa ccgaaaaact aaaagcagaa attaatactt tattagacca
      481 aaccaaagca gcagtaaaag gtaaaggtaa cggactgatt attttagtca atggtggcaa
      541 aatttctgca tttggttcag gttatcgttt aagttggatt cacgataatt tagggattcc
      601 aatggcagat tctagcatta aaaataccgg tcacggtcag cctgtttcgt ttgaatttat
      661 ccaaaaactc aatccggatt ggttgtttgt gttagaccgt attgcggcta tcggacaaga
      721 aggtcaatca gcccaacaag tgttggataa tgaattagtt cgtcaaacta aagcttggaa
      781 aaacggtaat atcgtttatc taagtgctgc ctcatattta gcgccgggtg gttatgagca
      841 gatgaaaacc gacctaacta acattaaaac agcatttgag aaaaaataat taaccttaca
      901 agcggtcaga tttcctccta tttttgcaag tgcctgcatt tgtaaaaaag agagagaata
      961 tgaccgcttg ctatttatca ctatgttctc tttttttaga ttaaatctat ttcttttaat
     1021 attgctcatt ccaatcagtg ccagtgtggg tgtggcagat tttcattgga gtgaaatttt
     1081 tcattcttcc gaacaaagtc agatcttttt tatcagccgt ttaccaagaa cgctcgcagt
     1141 gatattagtc ggtgcaacct tagccgttgc aggtatggta ttacaaattg tgctgaagaa
     1201 ccgctttatt gagcctagta tgattggcac tagccaaagt gcggcaattg gtattttact
     1261 tgctagttta cttttcccaa catcagcatt actgttaaaa atgtctattg ccacattaag
     1321 tgcattaatg ggaatggggc tttttatgtt gctcattcgt caattaccgc ctcatcaaca
     1381 attaatgctc ccattaatcg ggatcgtttt tggcaatgtt attgaagcta tcagcacttt
     1441 tattgcttat gaaactgaca gcctacaagt gctttcgatt tggttttccg gcgacttctc
     1501 cggtattttg gcaggtcggt atgaactgct ctggattacc gctattctgg ctgttgtggt
     1561 ttatgtgatg gcagatcaat taaccattgc aggccttggt gaaaatatta gtaccaactt
     1621 aggcattaac tacaaacaaa tgacttggct tgccttaatt gtggtggcga tgattaccgc
     1681 tattgtcgtg gtgacggttg gacagattcc gtttatcggc ttggtcgtcc ctaatattgt
     1741 ctctcgcata gcaggtgacc gattgcgtaa aaatctgcct gcggtcgtgg tgttaggtgc
     1801 gaatttagtc ctgatttgtg acattttagg gcgagccatc aatgcccctt atgaagtgcc
     1861 gatttctact atttttggga ttattgggac agtgattttc ctctatttat tgctcaaaga
     1921 gaaacgggct gaggagaagg ctcgtggtta gatcacgctt tatcgtttta agcttaatct
     1981 tattagcaag tattctgttt tatatgacct ataatgcgaa aggtaattgg gactttatat
     2041 tgcaactgcg tggcaaaaag cttattttgc tctgtactat tgcttatacg attggtattt
     2101 cgaccctgct attccaaaca ctcacacata atcctatttt aactccaagt attttggggt
     2161 tcgattcgct ctacttgcta ttgcaaacct cgttagtatt tttatttggc ggtttaggct
     2221 ttactcagtt agacccaagc tataagtttt tctttgaaac cttgttaatg ctaggggcat
     2281 caatattact atttagttca ctgaatcgaa atcgatccga tttaacccga atgcttttaa
     2341 tcggtgtcat ctttggtgtc ttatttagaa gcctaaataa tttgttgcaa cgaatgtcga
     2401 cccaacagag tttgccgttg ctcaaggctc ttctttgcct catttaacct gactaccccc
     2461 acattacttt ggattggagg ctgtatcgct attctctctg ccatttgggt ctggttacaa
     2521 cggcataaat tagatatttt gttacttggc aaagataagg caattgggct tgggttagaa
     2581 tatcatcaat tttcacgtca attactaatc tgttgtggat tgttggtgtc tgtttcaacc
     2641 gcacttgttg gcccgattct atttctaggg ctacttgttt gtgccattgt taatgcaatt
     2701 agcccgactg tttgccatag cgtgcgaata ccaatgactt ttttaatctc tgccatcacc
     2761 ttaattttag ggcaggcaat cttcgagcaa gtgctgaaaa tgcaaggggt tctgagtgtc
     2821 gttattgaat ttattggcgg tattgtcttt atttatctca ttttaaaacg gaaaaaataa
     2881 ccataaatta aggaagaaaa tgataacggt taaaaatctt caccacaaaa tcgggaatgc
     2941 cacgattctg aataatatca atttaaccat tccaaatggt ggtattaccg ctttaatcgg
     3001 agcaaatggt gcgggcaaat ccaccctgct ctctttaatt gcacgcttgc aacctatcca
     3061 acagggtgaa atccacttaa atgagctgaa tatagccaac acagcttctc aaactatcgc
     3121 tcgacaactg gctatcttga cccaagataa tgtgattcat agccgtatta ccgtcaaaga
     3181 tctgctgtta tttgggcgtt accctcatca tcaaggcaga atcacttcgc acgataatgc
     3241 cattgtagaa gaggctctgg tacgatttga tttatcgact ttctcccacc gattcttaaa
     3301 tgaattatcc ggagggcaac gccagcgggc attaattgca atgaccttct gtcagcaaac
     3361 cgatcatatc ttattagatg aaccactgaa taatttagat atgttccatg ctcgggaatt
     3421 aatgaaatta ttacgaaaat taaccgatga actcgcctta actactataa tggtggtaca
     3481 cgacatcaac attgctgctg cttacgcaga tactattatt gcaatgaaag atggtggaat
     3541 taagatgatc ggcaccccaa aagagattat caccactgaa aatttaaaaa cagtgtttaa
     3601 tcttgatgcc gaagtgttag aatgccaagg caaaccttta gttattcatc atat
//
LOCUS       DANLZD010000188         3646 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.189, whole genome shotgun sequence.
ACCESSION   DANLZD010000188 DANLZD010000000
VERSION     DANLZD010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3646
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.189"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(105..1607)
                     /gene="ppx"
                     /locus_tag="PXE26_002418"
     CDS             complement(105..1607)
                     /gene="ppx"
                     /locus_tag="PXE26_002418"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HDL5594954.1"
                     /translation="MSSNIAPREFAAIDLGSNSFHMIVARIVNGSIQVLSRLKRRVRL
                     ADGLDENLVLSQDAIDRGIACLALFAKRLEGFSAENVKVVGTYTLRRAINNQAFLEQA
                     KAVFPYPISIISGQQEARLIYSGVSHTQPETGRKLVVDIGGGSTEMTIGDDFTPIRAE
                     SRHMGCVSFAKRFFPQGELTIERFDSAYQLAMEKIEDLMWEYKELGWDYALGSSGTIK
                     TVHQVLIANGYRDGLITESRLQKIIDICLEFKSLNEIKLRGLLDERADVLVPGLAILL
                     ALFHTFRIDVLRYSNGALREGVMYGLEKSFQVGDIRQRTAEALAEQFALDKQQAKRVE
                     HTALILFDQIKTWKNRRQVQDLRSMLKWASLLHEIGIVVNHNNVHRHSAYLIANRDLP
                     GFDFEQQTLLSVLMRYHLKGFKRSDIRSINRYQCRDVLTLVRVFRLAVLLNRSRQATV
                     VPKQLNLVIENNAWQLTFEQGFLANNPLISIDLEEEQKILASTNLQFAVS"
     gene            1803..2132
                     /locus_tag="PXE26_002419"
     CDS             1803..2132
                     /locus_tag="PXE26_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF496 family protein"
                     /protein_id="HDL5594955.1"
                     /translation="MSEVNKSFHDMLEYVHLYRLKNKLHRETADNDRKIRDNQKRVLL
                     LDNLTQYITDEMSIEEVRAIISNMRDDYENRVDDYMIRNAELSKQRREIRQKMASHKQ
                     APTNKKA"
     gene            complement(2196..3626)
                     /locus_tag="PXE26_002420"
     CDS             complement(2196..3626)
                     /locus_tag="PXE26_002420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIBC"
                     /protein_id="HDL5594956.1"
                     /translation="MSTLTYLQKIGRALMVPVAALPAAALLMGIGYWIDPDGWGTNSQ
                     LAALLIKSGAAIIDNMSILFAVGVAFGMSKEKDGAAALSGLVGYLVITTLLSPGTVAQ
                     LKGIAVDQVPAAFGKINNQFIGILVGVISAEIYNRFYQVELPKALSFFSGKRLVPIVV
                     SFILLYVWPVIFGALVSFGESIKDMGALGAGIYAFFNRLLIPVGLHHALNSVFWFDVA
                     GINDIPNFLGGAKSLAEGKAVIGVTGMYQAGFFPMMMFGLPAAALAIYHSAKPAKKMQ
                     VASIMFAAALASFFTGITEPLEFAFMFVAPVLYVVHALLTGLSVYIAASMEWIAGFGF
                     SAGLVDLVLSTRNPLAVQWYMLLAQGIVFAVIYYVLFRVVIQAFNLKTPGREEDSEVQ
                     TVNTVSRSEQAAKFVEALGGKENITSIDACITRLRLTLNDTAKADETKLKALGSKGNI
                     KLGENGYQVILGPEAEFVADAMKKLN"
BASE COUNT         1172 a          841 c          637 g          996 t
ORIGIN      
        1 tttaaaaaat actttttgca aaaaattagc taaatttgac cgcttgttcg caaaagggaa
       61 tgcaataaac gaaaaaggaa gccttcgctt ccttcattta aatgttaaga gaccgcaaac
      121 tgaagatttg tactcgccaa tattttttgc tcttcttcta aatctattga aatcagtgga
      181 ttattcgcta agaagccctg ttcaaaggta agttgccaag cattattttc aatcaccaaa
      241 ttcaactgtt tcggcactac agtcgcttgg cgagaacggt ttaatagcac cgctagccgg
      301 aaaacccgta ccaacgttaa tacatctcta cattggtaac ggttgatact acgaatatcc
      361 gagcgtttga atcctttaag gtggtatcgc attaataccg atagaagggt ttgctgttca
      421 aaatcaaatc ccggtaaatc tcggtttgca atcaaataag cagaatgacg atgcacatta
      481 ttgtggttta caacaatacc aatctcgtgt aataaacttg cccatttcag cattgaacgc
      541 agatcttgca cttggcggcg gttcttccaa gttttgattt ggtcaaataa aatcaacgcc
      601 gtatgctcca ccctttttgc ttgctgttta tctaaagcaa attgctcagc taacgcttct
      661 gcagtccgtt ggcgaatatc cccaacttgg aaacttttct ccaaaccata cattacccct
      721 tctcttaaag ccccgttgga ataacgtaat acatcaattc taaaagtgtg aaaaagtgct
      781 aaaagaatag ctaagcccgg aactagcaca tctgctcgtt catcaagtaa gcctcgtagc
      841 ttaatctcat ttaacgattt aaactctagg caaatatcaa taattttctg taggcggctt
      901 tctgtaatta agccatcacg atagccattg gcaatcagca cttgatggac ggttttaatc
      961 gtaccggaag aacctaaagc atagtcccaa cctaactctt tgtactccca cattaaatct
     1021 tcgatttttt ccattgcaag ctgataggca ctatcaaaac gctcaatcgt taattccccc
     1081 tgcgggaaaa agcgttttgc aaaactcaca caacccatat gacgactttc cgctcgaatc
     1141 ggggtaaagt catcaccaat agtcatttcc gttgaaccac cgccaatatc taccactaat
     1201 tttctgccag tttcgggttg ggtatggcta acgcccgaat aaatcagcct cgcctcttgt
     1261 tgtccggaaa taatggaaat cgggtaagga aatactgctt tcgcttgctc cagaaaagct
     1321 tggttattga ttgctctacg taaggtataa gtgccaacca ccttcacatt ctctgcagag
     1381 aacccttcta aacgttttgc aaataaagct aaacaagcaa tgcctctatc aatcgcatct
     1441 tggcttaata ctaagttttc atcaagccca tctgccagcc gtacacgccg tttcaaacgg
     1501 gaaagcactt gaatggaacc atttacgata cgggctacaa tcatatgaaa gctgttcgag
     1561 cctaaatcaa tagctgcaaa ctctctagga gcaatatttg atgacataat gaaaccctgt
     1621 accaataact gaaataagta agatattacc atttttgagc cctagatatc actacaaatt
     1681 tagcgttatt cgcgagaatt aatttaaatc ataaaatgtg ataaattttt ttgacgaatt
     1741 gacggaaaaa gaataggatt tacgagctta cttaattcaa cactacatca agggagattg
     1801 atatgtctga agtgaataaa tcattccacg atatgctgga atatgtgcat ctttatcgtc
     1861 taaaaaacaa actgcaccgt gaaacggcgg ataatgatcg caaaattcga gataatcaga
     1921 agcgtgtact tttattagat aacctaacgc aatatattac cgacgaaatg tctatcgagg
     1981 aagttcgagc gattatttcc aatatgcgtg atgactatga aaatcgagta gatgattata
     2041 tgatccgtaa tgcggaactt tccaaacaac gccgtgaaat ccgccaaaaa atggcctctc
     2101 acaaacaagc accaaccaat aaaaaagcat aaaaagccaa gcggtctgat ttgcaaaaaa
     2161 atatgcaaat cagaccgctt gtgattaagc agagattaat tcagcttttt cattgcatct
     2221 gccacaaatt ctgcttccgg tcccaaaatc acttggtagc cattctcgcc taatttgata
     2281 ttaccttttg accctaacgc tttcaatttg gtttcgtctg ctttcgccgt atcatttaag
     2341 gttaggcgta agcgggtaat acaagcatca atgctggtaa tattctcttt accacctaat
     2401 gcttcaacaa atttggcagc ttgttcgcta cgagaaacag tattcactgt ttgtacttcg
     2461 ctatcttcct cacgccccgg cgtttttaaa ttaaaggctt ggatcactac tcggaacaat
     2521 acatagtaaa ttactgcgaa tacgatacct tgggccaata acatatacca ctgcactgcc
     2581 agcggatttc gtgtcgataa cactaaatcg accaaccctg cactaaaacc gaaaccggca
     2641 atccattcca ttgaggctgc aatataaaca gataatccgg ttaataatgc gtgaaccaca
     2701 taaagcacag gtgcaacaaa cataaaggca aattcaagcg gttccgtaat gccggtgaag
     2761 aacgaagcta aagcagcagc aaacataata gaggctactt gcattttctt agccggtttc
     2821 gcactgtggt aaatagctaa tgctgccgca ggtaagccaa acatcatcat cgggaagaaa
     2881 ccagcttgat acatacctgt tactcctatc actgctttgc cctcagccaa tgattttgcc
     2941 ccacctaaga agtttggaat atcattaatg cctgcaacat caaaccagaa aaccgagttt
     3001 aatgcgtggt gtaatccaac cggaattaat aaacgattaa agaaagcata aatacctgcc
     3061 cctaacgccc ccatatcttt gatagattcc ccaaaagaga ctaaagcacc aaaaataacc
     3121 ggccagacat aaagcaagat aaatgacacc acaatcggca ccaatcgttt accgctaaag
     3181 aaagacaatg ctttcggtaa ctctacttgg tagaaacggt tataaatttc ggctgaaata
     3241 acccctacta agatcccgat aaattggttg ttgattttac cgaatgctgc aggcacttga
     3301 tcaactgcga tcccttttag ctgagcaacg gtccccggag acaacaaagt ggtaattact
     3361 aaatacccga ctaaaccgga taatgctgct gccccatctt tttcttttga cataccaaat
     3421 gccacaccca cggcaaatag aatagacata ttatcaataa ttgccgcccc agatttaatc
     3481 agcaatgccg ctaattggct atttgttccc cagccgtccg gatcaatcca atagcctata
     3541 cccatcaata atgctgctgc tggtaatgca gcaaccggca ccattaatgc acgcccaatt
     3601 ttttgtaaat aggttaatgt actcataaaa gcctccaaaa atacct
//
LOCUS       DANLZD010000189         3613 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.190, whole genome shotgun sequence.
ACCESSION   DANLZD010000189 DANLZD010000000
VERSION     DANLZD010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3613)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3613)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3613
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.190"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            157..1959
                     /gene="frdA"
                     /locus_tag="PXE26_002421"
     CDS             157..1959
                     /gene="frdA"
                     /locus_tag="PXE26_002421"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HDL5594957.1"
                     /translation="MQSVNFDVAIIGAGGGGLRAAIAAAEANPNLKIALISKVYPMRS
                     HTVAAEGGSAAVIKDTDSFDNHFNDTVGGGDWLCEQDIVEYFVEHSPIEMTQLERWGC
                     PWSRREDGEVNVRRFGGMKIERTWFAADKTGFHILHTLFQTSIKYPNIVRFDEHFVLD
                     ILTDNGEARGCVAMNMMEGTLVQINANAVVIATGGGCRTYRFNTNGGIVTGDGLSMAY
                     RHGVALRDMEFVQYHPTGLPNTGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPIG
                     KPENKYMELGPRDKVSQAFWQEWRKGNTLKTAKGVDVVHLDLRHLGEKYLLERLPFIC
                     ELAKAYEGVDPAKAPIPVRPVVHYTMGGIEVDMNAETSIKGLFAVGECASSGLHGANR
                     LGSNSLAELVVFGKVAGENAARRALEVTARNQPQIDAQAKDVVARLHALANQEGNESW
                     SDIRNQMGDAMEEGCGIYRTQESMEATVNKIQELKERYKNISVKDKSSVFNTDLLYKI
                     ELGFILDVAQSIACSAVERKESRGAHQRLDYVERDDVNYLKHTQAYYNAEGTPTIKYS
                     DVKITKSQPAKRVYGAEAEAQEKVKKAAEAQAQQ"
     gene            1975..2706
                     /locus_tag="PXE26_002422"
     CDS             1975..2706
                     /locus_tag="PXE26_002422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005639269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HDL5594958.1"
                     /translation="MANLDKMTIEVLRYNPESDSEPHLDRYEVPYDSQTSLLDALGFI
                     KDELEPELSYRWSCRMAICGSCGMMVNGKPKLACKTFLRDYSGFMRIEPLANFPIERD
                     LVVDLSHFIDSIEAIKPYIIDNKAPEGQRTKQTPAQLEKYRQFSMCINCGLCYAACPQ
                     FGLNPEFIGPAAITLAHRYNLDNRDNGREERMKLLSSKNGVWSCTFVGYCSEVCPKHV
                     GPASAVNQGKLESAKDYVISMIKPR"
     gene            2716..3108
                     /gene="frdC"
                     /locus_tag="PXE26_002423"
     CDS             2716..3108
                     /gene="frdC"
                     /locus_tag="PXE26_002423"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HDL5594959.1"
                     /translation="MSATKRRPYVRGMKASWWKKLDFYKMYMVREATCLPTVWFCIVL
                     FYGAVALSKGTFTTDFVDFLQNPLVVILNIISLAAMLYHAATLFVMTPAVMSVMVKGK
                     HLPVSVGRNILWAATGVISVIALILVYI"
     gene            3122..3469
                     /gene="frdD"
                     /locus_tag="PXE26_002424"
     CDS             3122..3469
                     /gene="frdD"
                     /locus_tag="PXE26_002424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HDL5594960.1"
                     /translation="MSLDQNPKRSNEPPVWLLFSAGGMVSALFFPVVIFIIGLLLPFG
                     LVSPDNIISFAHTWIGKLAIMVLAIFPMWAGMHRIHHGLHDLKVHTPAGNVIFYGLSI
                     LYTILVIIAVVQI"
BASE COUNT         1064 a          655 c          852 g         1042 t
ORIGIN      
        1 tacctttatg aagctttatt accttttttg aggtagatca caaaattaca ttttttatgt
       61 tacaaatttg taaaaatagg ttatctcatt gctcaaatag tggcacaata tgattacttt
      121 ttaatgaatt aagttattta actttcggag tgcattatgc aaagtgttaa ttttgatgtc
      181 gcgattatag gtgccggtgg tggtggcttg cgtgctgcta ttgcggcggc tgaagcaaat
      241 ccaaatctaa aaattgcttt aatttcaaaa gtttacccaa tgcgtagcca tacggttgca
      301 gcagaaggtg gttcagcggc ggtaattaaa gataccgact ctttcgacaa tcactttaat
      361 gataccgtcg gtggtggtga ctggttatgt gagcaagata ttgtggagta ttttgtagag
      421 cattcgccga ttgaaatgac acaattagaa cgctggggtt gcccttggag tcgtcgtgaa
      481 gacggtgaag tgaatgttcg ccgttttgga ggaatgaaaa ttgagcgtac ttggtttgcg
      541 gcggataaaa ccggtttcca cattttgcat actttgttcc aaacttcgat taaatatccg
      601 aatattgtgc gttttgatga gcattttgtg ctggatattc tcaccgacaa cggcgaagct
      661 cgtggttgtg tggcaatgaa tatgatggaa ggcacacttg ttcaaatcaa tgcaaatgca
      721 gttgtgattg caaccggtgg cggctgccgt acttatcgct ttaacactaa cggcggtatt
      781 gtaaccggcg acggtttatc aatggcgtat cgtcacggtg tggctttgcg tgatatggag
      841 ttcgtacaat atcacccaac aggtttgcca aataccggta ttttgatgac agaaggttgt
      901 cgtggtgaag gtggtatttt agttaataaa gatggctacc gttacctgca agattatggt
      961 ttaggaccgg aaacacctat cggcaaaccg gaaaacaaat atatggaatt aggccctcgt
     1021 gataaggttt cacaagcatt ctggcaagaa tggcgtaaag ggaacacctt aaaaaccgca
     1081 aaaggcgtgg acgtagttca cttagattta cgccatttag gtgaaaaata tttacttgag
     1141 cgtttaccgt ttatttgtga attagcgaaa gcctatgaag gggtcgatcc ggctaaagcg
     1201 ccgattcctg ttcgcccggt ggttcactac acgatgggtg gtattgaagt ggatatgaat
     1261 gcggaaacct caattaaagg cttattcgca gtaggtgaat gtgcttcatc aggcttgcac
     1321 ggtgcgaacc gtttgggttc taactcatta gcagagcttg tggtgttcgg caaagttgcc
     1381 ggtgaaaatg cggctcgccg tgcgttagaa gtgactgctc gcaaccagcc acaaattgat
     1441 gcacaagcaa aagatgtggt ggctcgcttg cacgcattag cgaaccaaga gggtaatgaa
     1501 tcttggtcgg atatccgtaa ccaaatgggt gatgcgatgg aagaaggttg tggtatttac
     1561 cgtacccaag aaagtatgga agcgactgta aacaaaatcc aagagctaaa agagcgttat
     1621 aaaaacatca gcgtaaaaga taaatcaagt gtgtttaaca ctgatttact ctacaaaatt
     1681 gaattaggct tcattttaga tgtggctcaa tccattgctt gctctgcggt agagcgtaaa
     1741 gaatctcgtg gggctcacca acgtttagac tatgttgagc gtgatgatgt gaactactta
     1801 aaacacacac aagcgtacta caatgcagag ggtacaccga cgattaaata cagcgatgtg
     1861 aaaatcacta aatcacaacc ggctaaacgt gtgtatggtg cagaggctga agcccaagaa
     1921 aaagtcaaaa aagcagcaga agctcaagca caacaataga gaaggagtag taaaatggca
     1981 aatttagata aaatgaccat cgaagtgcta cgctacaacc ctgaatcaga tagcgagcca
     2041 catttagaca gatatgaagt gccgtatgac agccaaactt cacttttaga tgcattgggc
     2101 ttcattaaag acgaattaga accggaactt tcttatcgct ggtcttgccg tatggcgatt
     2161 tgtggttctt gcggaatgat ggtaaacggt aagccgaagt tagcttgtaa aacattcctg
     2221 cgtgattaca gcggttttat gcgaattgag ccgctggcga acttcccgat tgagcgtgac
     2281 ttagtagtgg atttaagcca ctttattgat agcatcgagg caattaaacc ttatattatt
     2341 gataataaag caccggaagg acagcgtact aaacaaacgc cggcacaatt agagaaatat
     2401 cgtcaattct caatgtgtat caactgcggt ttatgttatg cggcttgccc acaatttggt
     2461 ttgaaccctg aatttatcgg acctgctgcg attacattgg ctcaccgcta taacttggat
     2521 aaccgtgata atggtcgtga agagcgtatg aagctactca gcagcaaaaa cggtgtttgg
     2581 agctgtactt tcgtgggtta ctgctcggaa gtctgtccga aacacgtcgg ccctgcttcg
     2641 gctgtaaacc aaggtaaact tgaaagtgcg aaagattatg ttatctcaat gatcaaaccg
     2701 agataggagg aagaaatgtc agcaacaaaa cgtagacctt atgtaagggg aatgaaagcc
     2761 agctggtgga aaaaactcga cttctataaa atgtatatgg tgcgtgaagc tacctgtctt
     2821 ccaactgttt ggttctgcat tgtattattt tatggagcag ttgcgttaag taaaggaaca
     2881 tttactaccg attttgtgga tttcttacaa aatccgttag ttgttatcct aaacataatt
     2941 tcattggcag caatgttata tcatgcggca acactttttg tgatgacacc tgccgtcatg
     3001 tccgtgatgg ttaaaggtaa acacttacca gtctcggttg gaagaaatat tctttgggca
     3061 gcaacaggcg taattagcgt aattgcatta atcttggttt atatttaaga aggggaagaa
     3121 aatgagtctt gatcaaaacc caaaacgttc aaatgaaccg ccggtatggt tgctttttag
     3181 tgctggggga atggtaagtg cattattttt ccctgtggta atctttatta tcggtttatt
     3241 actgccattc gggttagtat caccagataa tatcatttcc tttgcccata cttggatcgg
     3301 caagctcgct attatggtat tagcgatttt ccctatgtgg gcaggaatgc accgtatcca
     3361 tcatggatta cacgacctga aagttcacac gccagcaggt aatgtgattt tctacggatt
     3421 gtctatctta tacacaattc tagtaatcat cgcagtcgtg cagatttaaa tgagaaagac
     3481 catcttgtat aaagcagatg gtcttttcat ttttaatatg ctaacaagcg gtcgaattta
     3541 taagaaaatt tgcaaatatt agaaattttg ccgataaaac gatcgttttg tattaaatat
     3601 ctgcaaaaaa gat
//
LOCUS       DANLZD010000190         3586 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.191, whole genome shotgun sequence.
ACCESSION   DANLZD010000190 DANLZD010000000
VERSION     DANLZD010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3586)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3586)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3586
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.191"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            11..373
                     /locus_tag="PXE26_002425"
     CDS             11..373
                     /locus_tag="PXE26_002425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HDL5594961.1"
                     /translation="MKPTNKADFQRVINAAGYSMKGLKAAYINEAAFRQEIWCATILF
                     PLGLILGETNIEKALLVGTVLLVLVTELLNSAVESVVDRIGADFHELSGRAKDIGSAA
                     VFMAMVLLAITWILILFC"
     gene            410..2053
                     /locus_tag="PXE26_002426"
     CDS             410..2053
                     /locus_tag="PXE26_002426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HDL5594962.1"
                     /translation="MRLKKTLLSVALLSATSAMAYETGKTYRFTVLHTNDIHGHFWQS
                     DKGEYGLAAQKTLVDNIRKEVAEKGGSVLMLNAGDANTGVPESDMQNARPDIEGMNAI
                     GYDAMVLGNHEFDYPLQILSMQEKWAKFPFISANVINKKTDKPIVKPYVMLERGGLKI
                     AVIGLTTEDTAKLGNPDVTENAFFKNPIETAKNTLAEINQKEKPDVRIALTHMGYYFD
                     GKHGTNAPGDVTMARTLEKGAFDLIIGGHTHDTVCIDEKGQFKAKYTPGEECKPDFQN
                     GTWIVQAGEWGKFVGRADFEFKDGKATLVKYELIPVNLKKTIKKEDGTKEYRLYQPEI
                     KADEATYTLLKKYQDEGDKKLNIEVGRVKGLLDGKREHIRFQQTNLGRLIAQSQMERV
                     KADIGIMNSGGIRTSLEEGVITYKHILTVQPFGNMIATVDLKGQELLDTLTTIALKEV
                     DTGAYPQFAGISMVVDRTAKTISDVKIGGKPFDKEKTYKVSLPDYVAAGGDGYPLLKK
                     HPSYVNTGFIDAEMLKKFFEENKIIEADKYDPKNQIIFK"
     gene            complement(2260..3129)
                     /locus_tag="PXE26_002427"
     CDS             complement(2260..3129)
                     /locus_tag="PXE26_002427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDL5594963.1"
                     /translation="MSSRGKILNTISSLQNSLTKTEKKIAAAILSQPELLSQCSLSEV
                     AKQLDVGEATFIRFCRTLGFKGYTDFKLELAIELATQNQDNRVLLDTDVSESDTSKDI
                     AEKLKVSLDNVIEETINLLDFNVLEKVVEELRKAKRIFLFGVGSSGLTAEDAKHKLMR
                     IGLQTDAVTNNHFMYMQAALVKEGDLVIGISHSGYSEEIVKSLRFSRANKATTVAITH
                     NLRSPVTEEANYVLINGNRQGHMQGDSIGTKMSQLFVLDLIYTLLVKAEPENALKQKQ
                     KTLNVILEQRVKG"
     gene            complement(3139..>3586)
                     /locus_tag="PXE26_002428"
     CDS             complement(3139..>3586)
                     /locus_tag="PXE26_002428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HDL5594964.1"
                     /translation="SRDDYLKSLPPVFARLCKKLKSLDLVNLELGWQELENGIRMNVM
                     SFETTPAEGKKAELHRKFIDIQLLIDGEEMIEYGLSQPDLSKYDEYRDEDDYQLTAEI
                     DDKNNLILKPNMFAIFLPYEPHKPGNSVNGNKTLKKLVVKVPVELI"
BASE COUNT         1150 a          689 c          650 g         1097 t
ORIGIN      
        1 tttatttact atgaaaccaa ccaataaagc agattttcaa cgtgtgatca atgcagctgg
       61 ctactctatg aaggggttaa aagccgctta tattaatgaa gccgcctttc gccaagaaat
      121 ttggtgcgct actattttat tccctctagg gcttattcta ggcgaaacca atattgaaaa
      181 agcattatta gtaggcacag ttttacttgt tttagttaca gaactactca atagtgcggt
      241 tgaatctgtt gttgaccgca ttggggctga tttccacgag ctttctggta gagctaaaga
      301 tattggctct gcagctgtat ttatggcgat ggttttactc gctataactt ggatattaat
      361 tttgttttgt taactctatt tttcaaccaa cactcttact gaggtattta tgcgcttaaa
      421 aaaaacatta ctttcggtag cactacttag tgcaacatca gcaatggcct acgagacagg
      481 taaaacatat cgttttacgg ttttacatac taacgatata cacggtcact tttggcaaag
      541 tgataaaggc gaatacggtc tcgctgctca aaaaacattg gttgataata ttcgcaaaga
      601 ggtcgcagaa aaaggtggtt cggtattaat gctgaatgca ggtgatgcga atacaggcgt
      661 gccggagtca gatatgcaaa atgcacgtcc tgatattgaa ggaatgaatg cgattggtta
      721 cgatgcaatg gttctaggta atcacgaatt tgattaccca ctgcaaattc tctctatgca
      781 agaaaaatgg gctaaattcc cctttatttc ggccaatgtc attaataaaa aaacggataa
      841 acccattgta aaaccttacg tgatgttaga acgaggcgga ctaaaaattg ctgttatcgg
      901 attaacaacc gaagataccg caaaattagg taatccagat gtaacggaaa atgccttttt
      961 caaaaaccct attgaaacag caaaaaacac attagctgaa attaatcaaa aagaaaaacc
     1021 cgacgtacgt atcgctttaa cccatatggg ttactatttt gacggtaaac atggtactaa
     1081 tgcaccaggt gatgtaacaa tggcccgtac cttagaaaaa ggagcgttcg atttaatcat
     1141 tggcggtcat acccacgata ctgtttgtat tgatgaaaaa ggtcaattca aagccaaata
     1201 tacgccgggt gaggaatgta aaccagactt ccaaaacggt acttggattg tgcaagccgg
     1261 cgaatggggc aaatttgttg gacgggctga ttttgagttt aaagatggaa aagctacctt
     1321 ggtaaaatat gaattaattc cggtcaactt aaaaaaaacc attaaaaaag aagacggtac
     1381 taaagaatac cgactttacc agcctgaaat caaagccgat gaagcaacct ataccttatt
     1441 gaaaaaatat caagatgagg gcgataaaaa gcttaatatt gaagttggtc gtgtgaaagg
     1501 gttattagac ggcaaacgtg agcatattcg cttccaacaa accaatctcg gtcgtttaat
     1561 tgcacaatcg caaatggaaa gggtaaaagc cgatatcggg attatgaact ccggcggtat
     1621 tcgtacctcc cttgaagaag gtgtaataac ttataaacat attctgactg ttcaaccttt
     1681 cggtaatatg attgcaacgg tggatttaaa aggacaagaa ttgttagata ccctcaccac
     1741 tattgctctg aaagaagttg atactggcgc ttatcctcaa tttgccggca tttcaatggt
     1801 agtcgaccgt acagcaaaaa ctatttctga tgttaaaatc ggtggcaaac cttttgataa
     1861 agagaaaact tataaagttt ctctgcctga ctatgttgcg gctggtggcg atggctaccc
     1921 attactgaaa aaacacccta gctatgtcaa tacaggcttt attgatgccg aaatgctgaa
     1981 aaaattcttc gaagaaaata aaattattga ggcagataaa tacgatccaa aaaaccagat
     2041 cattttcaaa tagagctata gaaaatgaaa ctcactctgg cagtctctgc tcaaaagagc
     2101 tgtggctgcc tgtagattgt tttcttactt tcaagtgtta taggaaatcg ataaaaaatc
     2161 cctaccaaat taattcatca ccatatgatg aaaattaaaa aacctctggc aatactttgc
     2221 caaaagtctt tgacttttat agggtaatat cactgcttat tagcctttaa cacgttgttc
     2281 caaaatcaca ttcagtgttt tttgtttctg tttcaacgca ttttcgggtt cggctttaac
     2341 tagtaaggta taaattaaat caagaacgaa aagttgtgac attttagtac cgatagaatc
     2401 tccttgcata tgcccctgtc gattaccatt aattaacaca taattagcct cttccgtgac
     2461 gggggaacgt aaattgtgtg taatcgcaac cgttgtcgct ttatttgcac gagaaaaacg
     2521 tagtgatttc acaatttctt cagaatagcc tgaatgacta atccctataa ctaaatcccc
     2581 ctctttcacc aatgccgcct gcatatacat aaaatgatta tttgtgactg catcggtttg
     2641 tagcccaata cgcattaatt tatgttttgc atcttctgcg gttaacccag aagaacccac
     2701 tccaaataaa aagatccgtt ttgccttacg taattcttca acaacttttt ccaacacgtt
     2761 aaagtcaagc aaattaatag tctcttcaat aacgttatct aaactcactt tgagcttctc
     2821 agcaatatct ttcgatgtat ccgattctga aacatccgta tcaagcaata ctctattatc
     2881 ttgattttgc gtagccaact ctattgcaag ctctaattta aagtcggtat aacctttaaa
     2941 acctaatgta cgacaaaaac gaataaaagt tgcttcacca acatctaatt gtttggccac
     3001 ttcagataat gaacattggc taagtaattc cggctgagat aaaatagcag cagctatttt
     3061 cttctctgtt ttggttaaac tattttgtag cgagctaatt gtattaagaa tttttccccg
     3121 actagacata gtagcctcct aaatcaattc aacaggtact ttcaccacca gttttttcaa
     3181 tgttttgttg ccattcaccg aatttccagg cttatgtggt tcataaggga ggaaaatagc
     3241 gaacatattt ggcttgagga tcaagttatt tttatcatca atctcagctg ttaattggta
     3301 gtcatcttca tctcgatatt catcatactt agataaatct ggctggctta acccgtattc
     3361 aatcatttct tcgccgtcta tcaataattg aatatcgata aattttcggt gtaactctgc
     3421 ttttttcccc tcagctggcg tagtttcaaa tgacattaca ttcatgcgaa taccattttc
     3481 taattcttgc cagcctaatt ccaaattaac taaatctaaa ctttttaatt ttttacaaag
     3541 gcgagcgaat actggtggaa gagattttaa ataatcatct cttgat
//
LOCUS       DANLZD010000191         3556 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.192, whole genome shotgun sequence.
ACCESSION   DANLZD010000191 DANLZD010000000
VERSION     DANLZD010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3556)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3556)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3556
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.192"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            1..2031
                     /locus_tag="PXE26_002429"
                     /pseudo
     CDS             1..2031
                     /locus_tag="PXE26_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249230.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
     gene            2075..3511
                     /locus_tag="PXE26_002430"
     CDS             2075..3511
                     /locus_tag="PXE26_002430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3327 domain-containing protein"
                     /protein_id="HDL5594965.1"
                     /translation="MKKTTACILTFLVSSVLYANNITIELKQNDFVQGKLIQKAQQPL
                     SLSIIFPDQSSRLLAQNVFGEQDFMFKSELIGTATFSILANGATVSDQDFTLTIERHI
                     PISAQIAPPKVIENTQLEELSQKIAKNPEKQTALINDFWDKAKQAGTPLIEPLDEQQS
                     RVTFLWRGATKNARIWGGVSTEHDFMQRFGETDIWYKSYIVPNDTLVEYKLAPDVPTL
                     PVDENTQRRALLATAQADPLNKTAYFEKIGQNIHNTDKFNYASLLKLPNAPTQSFLTE
                     APNIAKGKLQQLIFESATLGNKHRLFVYLPDGFSAEKNYAVLYLFDGVEYTERVPTKT
                     ILDNMIAQKVILPTVAVFIENPSSESRRVELPANPIFTQVLAKELVPFVEKQLNIKTK
                     ERIIGGSSYGGLSSAYTVLNYPNVFSKALILSGSFWWQPKGTPSEQSHYIAQQFIQKE
                     KLPLCFFISAGFYESGKSAICKRSNYFA"
BASE COUNT         1174 a          716 c          678 g          988 t
ORIGIN      
        1 gtagctcctc aagtattagc agaaacaacc tctcaagcag aactaaatgc tattgaggtc
       61 aaagagaaat tggcagctac caccggctat attcctgttt atacgactgt aggaacgaaa
      121 acattaacct ctttggctcg tacacctttt agtatcaatg ttgtctctga tgatttaatg
      181 catgaccaag ctgttcgttc tgttaccgat tcagtggctt atacctccgg tatgatgggt
      241 ggctatcgtg gtaacaattc gcttatcgaa atctccattc gaggcattgg caataaaagt
      301 gatggcagta caattccgac ctatttaaac ggttctcgct accaaactgc atttgaaatc
      361 gatccgttct tcttagaaag tatcaatgtg attaaaggtc caaactccat tttatacggg
      421 caagctaatc ccggtggcgt aatggatatt atcaccaaaa aagccggcag taacccacat
      481 cgccatttgc aatttgtggt gggaaaccat caacgatacc aaatcgggct ggatattgaa
      541 gaaaatctct ccaatacctt atccgctcgt ttaatcggtc aattagaacg aacaaactgg
      601 aatacctaat ttgtaaaaga aaaaggcggt gcttttgctc caagcatttt atggaaaccg
      661 actacaaata cagaacttaa tgtttacgct tactatgcaa aaaaaccgaa agccggtgat
      721 cgtaactttt taccgaaaga aggaacgatt aatagcgtaa acgggaagga actaccctat
      781 gatatgttcc tcagcgatct gaactatcac ggtttaaaag ccgaacaaat gcaagtaggt
      841 tacagtttct cacataaatt tacgccaaac ctaacgttcc gccaaaatgc aagttaccat
      901 aatggcgaag agaatttcaa aaatctagtt tattggggcg atgtcggttc ggttttagaa
      961 cgtagagctc gccattggga tgtcaaaacc caagaaatca acttagataa ccaattagaa
     1021 tgggtattta gcacagcaaa tataaatcat accttgttag ccggtattga ttataaacga
     1081 gtgcgtaaag atcttgataa ctatatgggg attgcccctg attttgattg gcagaaccct
     1141 gtttatggcg tgaccgttac tgagcctagc ttattttcaa gtgaagtgaa gcatttaaaa
     1201 caacttgggg tttatctaca agatcaaata gaaatcggta attttgactt cctgttaggc
     1261 ggtcgttacg atcgagcaaa aaacagcaac caagatcgtt tgaacagtaa aacagagaat
     1321 aaccaagaag gaaaatttac ttggcgtaca ggcgtagttt acaactttga aaacggtatc
     1381 gctccgtata tcagctacag cacttctttt gtgccatcgg ctgaaaaaga tgctcaagga
     1441 aatttcttaa aaccaacaac tgctgggcaa tgggaagtgg gaatgaaata ccaacctacc
     1501 caagacacct tactgacctt agcaggattt aaaattacac aaaaagattt agccaattat
     1561 caatggcaaa cccgctctta tgagcaaatt ggtgaagtgc aaaccaaagg aattgaagtg
     1621 agtttaaatc agcaattatc cgataaattt tcaatagcgg cttcttatgc ttacttaaaa
     1681 aaagagatta ctgcagataa agatggcacg acgattggaa aaacgcagtg gggagtgcct
     1741 cgccatcaag catctctttg ggcaaaatat aaattctttg ataagctgac cgccggtgta
     1801 ggtgtacgct atatgggaac gacttttggc gataaccaaa atacttttac cgtaccggca
     1861 tacacacttt acgatatgat gctagcttat gattttatgc ctaacttaaa cttacagctc
     1921 aacgcacaaa acctgacgaa taaaaaatat gtcgcaagct gtgccaataa tttttcctgt
     1981 ttctatggaa aagatcgcaa tttaagtgca acgttaaact atcattttta atctcaacag
     2041 ccctcaaatg agggcttaaa cttttgcaaa aaatatgaaa aaaacgaccg cttgtattct
     2101 tacttttttg gtttcatctg tgctttatgc taacaatata accattgagc ttaaacagaa
     2161 tgattttgtg caaggcaaat tgattcagaa ggctcaacag ccactttcct tgtcgattat
     2221 ttttcctgac caaagctctc gcctgctggc tcaaaatgtc tttggtgaac aagattttat
     2281 gtttaaatca gaactaatcg gcacagctac tttttctatt ctagcgaatg gtgcaaccgt
     2341 ttcagaccaa gattttacct taacgattga gcggcatatt ccaatctcgg cacaaattgc
     2401 tccacctaaa gtaattgaaa atacacagct tgaagaactc agccaaaaaa ttgcaaaaaa
     2461 tccagaaaaa cagaccgctt taattaacga tttttgggat aaagcaaaac aagccggcac
     2521 accattgatt gaaccattgg acgaacagca aagccgtgta acttttttat ggcgtggagc
     2581 aacgaaaaat gcccgtattt ggggcggtgt gagtactgaa cacgatttta tgcaacgctt
     2641 tggtgaaacg gatatatggt ataaaagtta tatagtgccc aatgacactt tagtggaata
     2701 caaattagct ccagatgtgc cgacattgcc cgttgatgag aatacccaac gcagagcgtt
     2761 actggctacg gctcaagccg atccactcaa taaaacagca tacttcgaga aaatcggaca
     2821 aaatattcat aataccgata aattcaacta cgcttcgcta cttaaattgc caaacgcacc
     2881 tactcaatct tttttgactg aagctccaaa tattgcaaaa ggtaaactgc agcagttgat
     2941 ttttgagagt gcaacactcg gcaataaaca cagattattc gtctatctgc ctgacggttt
     3001 tagtgcagaa aaaaactatg cggttctcta tttatttgat ggtgttgaat ataccgaacg
     3061 agtgccaact aaaaccattt tagataatat gatcgctcag aaagtgattc tgcctactgt
     3121 agcggtgttt atcgaaaatc catcgagtga atcaagacgt gtcgagctgc ctgccaatcc
     3181 catatttacg caagtattgg caaaagaact tgtacctttt gttgaaaaac agctcaatat
     3241 aaaaacaaag gagcgaatta ttggcggctc tagctatggc gggctatcct ctgcttacac
     3301 cgtactcaac tatcctaatg tatttagtaa agcattgatt ctatccggtt cattttggtg
     3361 gcaacccaaa ggcacaccta gtgaacaaag ccactatatt gctcaacaat ttatccaaaa
     3421 agaaaaatta ccactctgtt ttttcatcag tgcaggtttt tatgaaagcg ggaaatcggc
     3481 tatttgtaag cggtcgaatt attttgcata gaattacact caattttgca tagataaaaa
     3541 ttaaaaacta tgcaaa
//
LOCUS       DANLZD010000192         3411 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.193, whole genome shotgun sequence.
ACCESSION   DANLZD010000192 DANLZD010000000
VERSION     DANLZD010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3411)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3411)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3411
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.193"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            142..1605
                     /locus_tag="PXE26_002431"
     CDS             142..1605
                     /locus_tag="PXE26_002431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL5594966.1"
                     /translation="MAEYSGTTQEKMKDKQVEQINISPHSIEAEQAVLGGIMLSNDHW
                     DNVAERVQPHDFYNYAHRIIFEQMAELVRHNKPIDIITLDQALKDKGVLQDVGGFAYL
                     AELSKNTPSAANILAYADIVRDRSDLRSVISAGNQIAEMGYKTKGRNSKEVLDEAERI
                     VFEIAEKRNNANEGPQRIDDILLKTLARMDTLSKNRHNGGVTGVSTGFVDLNKKTAGL
                     QPSDLIIVAARPSMGKTTFAMNLCENASLVDIEDKDDLDEQGNPKKKPAKPVLIFSLE
                     MPADQIMMRMLASLSRVDQTKIRTGQISDDEDTAKISSTMAILQERNNIYIDDSSGLT
                     PTELRSRARRIYRENGGLSLIMVDYLQLMRAPGFADNRTLEIAEISRSLKALAKELEV
                     PVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNDNSDLKGIAE
                     IIIGKQRNGPIGRVRLTFQGQYSRFDNYTGGHYDDEY"
     gene            1595..1900
                     /locus_tag="PXE26_002432"
     CDS             1595..1900
                     /locus_tag="PXE26_002432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgL domain-containing protein"
                     /protein_id="HDL5594967.1"
                     /translation="MNTKPTQPITLCAIYRSKAKEGMYLYVPKRDQFEQVPETLRQLF
                     GKPEFVMMFNLTGEKPLVRAKNEEVLQLLIEQGYYLQMPPPPENLHKAFIAQQKGEK"
     gene            1900..2349
                     /gene="nrdR"
                     /locus_tag="PXE26_002433"
     CDS             1900..2349
                     /gene="nrdR"
                     /locus_tag="PXE26_002433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HDL5594968.1"
                     /translation="MRCPFCSTEETKVIDSRLAASGYQIRRRRECISCKERFTTFESA
                     ELVVPYVIKNNGSREPFDAEKLRTGLRRALNKRPVSADDVEKAISQIIIQLQAMGERE
                     VPSRHIGTLAMNALKQLDKVAYIRFASIYLSFSDIEEFIKEIEKLKE"
     gene            complement(2423..2632)
                     /locus_tag="PXE26_002434"
     CDS             complement(2423..2632)
                     /locus_tag="PXE26_002434"
                     /inference="COORDINATES: protein motif:HMM:NF015431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5594969.1"
                     /translation="MPLNIWQKAVALLADSTVDRLVAENGLVEVLGETENPKFDLTMI
                     YAAHRYPSSIVRAFVGFVLEQVKAN"
     gene            complement(2574..3284)
                     /locus_tag="PXE26_002435"
     CDS             complement(2574..3284)
                     /locus_tag="PXE26_002435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5594970.1"
                     /translation="MNLNTLRLFVAVIQHGSLSKASERLNVPIATISRQIADLEKELN
                     IQLFDRQKSGVKPTMAGQRLYEQVHLSIEQLATAKEVLFEEQGNLKGKLRLSASPACE
                     PVLAWIADFQAAYPQVQVHCTLTDRLLDLSADGIDVAFRIGQLHGEQFIAKKVGQIGS
                     KWVAHPKFLARFGTPSTVKDLKNFPIAAWAKNEASVITLGTGRQAVEIPYLFSSNDSY
                     AIEYMAKSSGSACRQHGG"
BASE COUNT         1049 a          682 c          755 g          925 t
ORIGIN      
        1 caaagatttt aacgaaaatt gattttaagt aaagcggaaa ataacaagcg ggcgaatttt
       61 gcctaaaatt tgcaaatttc aatttaatta aaattccgat acactatgta catcaatacg
      121 tcattatagc aagagaaaaa tatggcagaa tatagcggaa caacccaaga gaagatgaaa
      181 gataagcagg ttgagcaaat taatatctca ccacattcga ttgaggcaga gcaagcggtg
      241 cttggtggca ttatgctcag taatgatcac tgggataatg ttgctgagcg tgtacaaccg
      301 cacgattttt acaactatgc gcatcgaatt atttttgaac aaatggcgga gttggtgcgc
      361 cacaataaac cgattgatat tattacgctg gatcaagcct taaaagacaa aggggtgctg
      421 caagatgtag gaggttttgc ctatttagcc gagctttcta aaaatacccc gagtgcagca
      481 aatattttag cctatgcgga tattgtgcga gatcgttccg atttaagaag tgtaatcagt
      541 gccggcaatc aaattgcgga aatgggctac aaaacgaaag ggcgtaactc caaagaagtg
      601 ttagacgagg cagagcgaat tgtgtttgaa attgcagaaa aacgcaataa cgccaatgaa
      661 ggtccacaac gtattgacga tattttgctt aaaacactcg ctcgaatgga tacgctatct
      721 aaaaatcgcc ataacggcgg agttactggt gtttctaccg ggtttgttga tctcaataaa
      781 aaaaccgcag ggttacagcc ttcggattta atcattgtgg cagcccgtcc ttcaatgggg
      841 aaaactactt ttgcaatgaa cttatgtgaa aatgcctcat tagtggatat tgaagataaa
      901 gatgatttag acgaacaggg taatccgaag aaaaaaccgg caaagccagt gctaattttc
      961 agcctggaga tgccggcaga ccaaattatg atgcgtatgc ttgcctcact ttctcgggtc
     1021 gatcaaacca agatccgaac cggtcagatt tcagatgatg aagacactgc taaaatctcc
     1081 agcacaatgg caattttaca agaacgtaat aatatctata ttgatgatag ctccggttta
     1141 acaccgaccg aattacgttc tcgagcgaga cggatttatc gtgaaaatgg cggattaagc
     1201 ttgattatgg tggactatct ccaattaatg cgagcgccgg gatttgcaga taatcgtact
     1261 ttagaaatcg cagaaatttc ccgttcttta aaggcactag cgaaagaatt agaagtgcca
     1321 gtagtcgctc tttctcagct aaaccggagt ttggaacaac gtgccgataa acgtccggta
     1381 aactcggatt tgcgtgagtc aggttctatt gagcaagatg cagacttaat tatgtttatt
     1441 tatcgtgatg aggtctataa cgacaattcc gatctgaaag gcattgcgga aattattatc
     1501 ggaaaacaac gtaacggccc gattggtcgg gtgcgtttaa cgttccaagg gcagtattcc
     1561 cgttttgata attacacagg agggcattat gatgatgaat actaaaccaa cccagccaat
     1621 cacactttgt gcgatttatc gcagtaaggc aaaagaagga atgtatttat atgtgcctaa
     1681 gcgtgaccaa tttgagcaag tgccggaaac attacgccag ttatttggta agcctgaatt
     1741 tgtgatgatg tttaatttaa ccggtgaaaa gccattggtg cgtgctaaaa acgaagaagt
     1801 gttacaatta cttatagagc aaggctacta tttgcaaatg ccacctccgc cggagaattt
     1861 gcataaagcc tttatcgcac aacagaaagg ggaaaaataa tgcgctgccc attttgttcc
     1921 actgaagaaa ctaaagtgat cgattcacgg cttgcagcaa gcggttatca aattcgccgc
     1981 cgccgtgaat gtataagctg taaagaacgt tttactacct ttgaatcggc cgaattagtt
     2041 gtgccttatg tgatcaaaaa taatggtagc cgagagccgt ttgatgccga aaaattaaga
     2101 acagggttaa gacgtgcatt aaataaacgc cctgtcagtg ctgatgatgt cgaaaaagca
     2161 attagccaaa tcattattca gctgcaagcg atgggcgaac gagaagtgcc gagtcgccat
     2221 atcggtacat tggcaatgaa cgcacttaaa caattagaca aagtagcata tatccgcttt
     2281 gcctctattt atttaagctt tagtgatatt gaagagttca ttaaagaaat tgaaaaatta
     2341 aaagagtagt tgcaaaaaaa cataaaaaaa tgaccgcttg tgagtttaaa atccacaagc
     2401 ggtcattttt ctttaaaaat actcaattag cttttacttg ttccaacaca aaccctacaa
     2461 acgcccgcac aatgctagac ggataacgat gggcggcata aatcatcgtc aaatcaaatt
     2521 tggggttttc tgtctcaccc aagacttcca ccaagccatt ttctgccacc aatctatcca
     2581 ccgtgctgtc ggcaagcaga gccactgctt tttgccatat attcaatggc atagctgtca
     2641 ttgctggaaa aaagataggg aatttctacc gcttgtctgc cagtgcctag cgtgatgacg
     2701 cttgcttcat tttttgccca agcggcaatg gggaaatttt tcaaatcttt gacggtgctg
     2761 ggcgtgccaa agcgtgccaa aaatttaggg tgtgccaccc atttactgcc gatttgcccc
     2821 acttttttgg cgataaactg ttcgccgtgt agttgcccaa tccgaaacgc cacatcaatg
     2881 ccatctgccg acaaatccaa aagacggtcg gtcagcgtgc aatgcacttg tacttgtgga
     2941 taagctgcct gaaaatcagc tatccacgcc aaaacaggct cgcaggcagg gcttgccgac
     3001 aggcgtaatt taccctttaa attgccttgc tcttcaaaca acacttcttt ggcagtggca
     3061 agctgttcaa tggacaaatg cacctgttca tacaggcgtt gccctgccat tgtgggttta
     3121 acgcctgatt tttggcggtc aaagagttga atgttaagct ctttttccaa atcggcaatt
     3181 tgacggctaa tggttgcaat cggcacattg agtcgctcgg aggctttgga gagactgccg
     3241 tgctggataa cggcgacaaa gaggcggagg gtgttgaggt tcattgtttt tctccccaat
     3301 gttcaatttc ttgaataaaa tgtttaatac tgccttggac ttgttgattt ttaccatata
     3361 gataataaac gcctgaaagt tcttgtaaaa atttactttc tttataagcg t
//
LOCUS       DANLZD010000193         3396 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.194, whole genome shotgun sequence.
ACCESSION   DANLZD010000193 DANLZD010000000
VERSION     DANLZD010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3396
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.194"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..279)
                     /locus_tag="PXE26_002436"
     CDS             complement(<1..279)
                     /locus_tag="PXE26_002436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5594971.1"
                     /translation="MIITMKDIAKEANVSLGTVSNVLNGKSNVSLAKIEKVQAAVEKL
                     GYRKNIQASTLKSGTSNKIAIILPNITELKYACLYENLDLICTQNDLSL"
     gene            complement(441..1781)
                     /gene="gdhA"
                     /locus_tag="PXE26_002437"
     CDS             complement(441..1781)
                     /gene="gdhA"
                     /locus_tag="PXE26_002437"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HDL5594972.1"
                     /translation="MSDLNALFQKIKQRDPNQAPFHQAVEEVFGSLAPFLAKNPKYTQ
                     QGLLGRIVEPERVISFRVTWVDDKGQVQVNRGYRVQMNSAIGPYKGGIRFHPTVDLGV
                     LKFLAFEQVFKNALTTLPMGGGKGGSDFDPKGKSDAEVMRFCQAFMSELYRHIGADTD
                     VPAGDIGVGGREIGYMFGQYKKLRNEFTSVLTGKSLTWGGSLIRPEATGYGAVYFAES
                     MLATKGQQIEGKSVVISGSGNVAQYAAEKVIQKGGKVLTVSDSNGYVLFPESGMTEAQ
                     LQALLELKNERRERLSVYATEQGLKYFDGQKPWGVKCDIALPCATQNELDTEDAKELV
                     KNGCICVAEGANMPTTLGGVEVFIGAKILYAPGKAANAGGVATSGLEMSQNAIRLSWS
                     REEVDQRLFNIMKAIHENCVENGTEADGFVNYVNGANIAGFKKVANAMLEQGIV"
     gene            complement(1974..2315)
                     /gene="bamE"
                     /locus_tag="PXE26_002438"
     CDS             complement(1974..2315)
                     /gene="bamE"
                     /locus_tag="PXE26_002438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HDL5594973.1"
                     /translation="MKMKSLLAAMLLALGVTACSTVEKVVYRIDVPQGNYLEQDKIAQ
                     LKVGMTAEQVEYLLGTPMLKNIFETHRWDYVFIKREGYKDPEQRNLFIYFDAKGLVSK
                     IDDSNANAEQK"
     gene            complement(2382..3383)
                     /gene="yejK"
                     /locus_tag="PXE26_002439"
     CDS             complement(2382..3383)
                     /gene="yejK"
                     /locus_tag="PXE26_002439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein YejK"
                     /protein_id="HDL5594974.1"
                     /translation="MSINVSEIVLHQLQKTEGENPELNTFLRENLLAISPEVDQMMLQ
                     LHQAYQSKAKAYGIFKPESVFAQQLNRLLEQETDFLPFSHSCAKMLAAELIKYPFADG
                     GTFILCRYTFLATEYLFIALIDSRNSMLVDEQLEIKRTQYLEIAQYDIACRINLTELK
                     LDATSNRYLTFVKGRVGRKIADFFMDFLSAEEGFNPQLQNQTLLQAVSDYCEQGELSA
                     PQTREVKKQVFEYCKGQINSGEEIALNELSNALPTLNEIDFAQFTQEQEYGLEENIPP
                     MRNALKTLTKFSGSGKGVTISFNAELLGERLIWDELNDTLTIKGLPANLRDQLERNK"
BASE COUNT         1000 a          737 c          572 g         1087 t
ORIGIN      
        1 gagagataaa tcattttgcg tacaaattaa atcaagattt tcatataaac aggcatattt
       61 cagctctgta atattgggca atataatagc aattttatta cttgtgccac tttttaacgt
      121 agaggcttga atatttttac gataacccaa cttttcaacg gcagcttgta ctttttctat
      181 tttagctaag ctaacattac tttttccgtt taatacattc gatactgttc ctaacgaaac
      241 atttgcttcc tttgcgatat ctttcatcgt aatgatcata tactgccctt tcacatactg
      301 ctaaaactga gattggcata gattttacca taattggcaa atgaaatacg atttcaattt
      361 agcttgtctc tagctacaac ctaaaataaa aaaactgcct cgatatatcg aggcagttct
      421 tgaataatag ggataataaa ttaaacaata ccctgttcta acatcgcatt tgccactttt
      481 ttgaaaccag caatattcgc accgtttaca tagtttacga aaccatctgc ttcagtacca
      541 ttttctacgc agttttcgtg aattgctttc ataatgttga ataaacgctg atctacttct
      601 tcacgactcc aagatagacg aattgcattt tggctcattt ctaaacctga ggttgccaca
      661 ccacctgcgt tagccgcttt acccggagca taaaggattt tcgcaccgat aaagacttca
      721 acaccaccta atgtggttgg catatttgca ccttctgcca cacaaataca gccgtttttc
      781 actaattctt tagcatcttc ggtatctaat tcgttttggg ttgcacaagg taaagcgatg
      841 tcacatttca caccccacgg tttttgaccg tcaaagtatt ttaagccttg ttctgttgca
      901 tacacagata agcgttcacg gcgttcgttt ttcaactcta ataatgcttg taattgtgcc
      961 tctgtcatac cggattcagg gaataagaca taaccgttag aatctgaaac cgttaatact
     1021 ttaccgcctt tttgaatcac tttttcagct gcatattgtg ccacgttacc cgaaccggaa
     1081 attaccactg attttccttc gatctgctga cctttagtcg ctaacataga ctctgcaaaa
     1141 tacaccgcac cataaccagt tgcttccgga cgaattaagc taccacccca agtcagcgat
     1201 ttaccggtta atactgaagt aaattcattg cgtaattttt tgtattgacc gaacatatag
     1261 ccgatttcac gacctcccac gccgatatcg cctgcaggaa cgtcagtatc agcaccaatg
     1321 tggcgatata attcgctcat aaacgcttgg cagaaacgca ttacttcggc atcagatttg
     1381 cctttcgggt caaagtctga accaccttta ccaccgccca ttggcaatgt cgttaacgca
     1441 tttttgaata cttgctcaaa ggctaagaat tttaatacgc ctaaatcaac ggttgggtgg
     1501 aaacgaatac cgcctttgta tggaccgatt gctgagttca tttgtacacg gtaaccacgg
     1561 tttacttgca cttgaccttt atcatcaacc caagtgacac ggaagctaat tacacgctca
     1621 ggctcaacaa tacgccctaa taaaccttgc tgggtatatt tcggattttt agctaagaaa
     1681 ggggcaaggc taccgaacac ttcttcaacc gcttgatgga aaggggcttg gttcggatca
     1741 cgttgtttga ttttttggaa aagggcgttt aaatcgctca tattatactc ctgaataaat
     1801 tgatgatgtt gtgtatttaa gatgagcgaa gtctagcaag caattttagc tttgaaaaga
     1861 tagattagaa aaatttatca ttaaaataag aaaaattaag tttaaatgct tattttttat
     1921 tcaaaaaaat aagcccactt ttaaaagtgg gcttttcgaa ccaacaaatc gtcctatttt
     1981 tgttctgcat tcgcattgct gtcatcaatt tttgatacta accctttagc atcaaaataa
     2041 ataaacagat tgcgttgttc aggatcttta taaccttcac gtttaataaa cacataatcc
     2101 caacggtggg tttcaaaaat gttctttaac attggtgtac caagcaaata ttcaacttgt
     2161 tccgctgtca taccgacttt aagttgagca attttatctt gttctaagta attgccttgc
     2221 ggtacatcaa tacggtacac cactttctca acggttgaac aagccgttac acccagtgca
     2281 agcaacattg cagctaaaag agatttcatt ttcataattg accttttgat aatccaaaat
     2341 tcagataacg agataatacc taaactgata aaaattttcc attatttgtt acgttccagc
     2401 tggtcacgca gatttgccgg taatcctttg attgtcagtg tgtcgtttag ttcatcccaa
     2461 attaaacgct ctcctaataa ttctgcgtta aagctaatcg ttactccttt gcccgaaccg
     2521 gaaaatttcg tcagggtttt aagggcattt cgcataggcg gaatattctc ttccaagccg
     2581 tattcttgct cttgcgtaaa ttgggcaaaa tcgatttcat tcagtgttgg caatgcgttg
     2641 gaaagctcat ttaacgcaat ttcctctcca ctatttatct gccctttaca atattcaaac
     2701 acctgctttt tcacttctcg agtttgaggg gcagataact ccccttgctc acaataatcg
     2761 ctcaccgctt gcaacaaggt ttgattttgc aattgtggat taaacccttc ttccgcactt
     2821 aaaaaatcca taaagaaatc ggcaatttta cgccctactc tgcctttcac aaaagttaaa
     2881 tagcgatttg acgttgcgtc aagtttcagt tcagttaaat taatgcggca ggcaatatca
     2941 tattgtgcaa tttcgagata ttgcgtgcgt ttaatctcta actgctcatc aaccagcatt
     3001 gaattacggc tatcaatcaa cgcaataaac aaatattcgg tagctaaaaa agtgtaacga
     3061 cacaaaataa aagtgccacc atcggcaaac ggatatttaa tcagctctgc tgcaagcatt
     3121 ttggcacagc tatggctaaa aggtaaaaaa tcggtttctt gctccaacaa gcggttgagc
     3181 tgttgagcga aaaccgactc cggtttaaat ataccgtaag cctttgcttt actttgatag
     3241 gcttgatgta attgcaacat catttgatcg acttcagggg aaattgccaa taaattttct
     3301 cgcaaaaacg tattaagctc cgggttctcg ccctctgttt tttgtaattg atgtaacacg
     3361 atttcagaaa cattaatgct cattaattca cttctc
//
LOCUS       DANLZD010000194         3389 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.195, whole genome shotgun sequence.
ACCESSION   DANLZD010000194 DANLZD010000000
VERSION     DANLZD010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3389)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3389)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3389
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.195"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            63..1238
                     /locus_tag="PXE26_002440"
     CDS             63..1238
                     /locus_tag="PXE26_002440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HDL5594975.1"
                     /translation="MSVIKMTDLDLAGKRLFIRADLNVPVKDGKVTSDARIVATIPTL
                     KLALQKGAKVMVTSHLGRPTEGVFEEENSLQPVVDYLNASDLGVPVRLVRDYLDGVEV
                     NENEIVVLENVRINKGEKKNDPELAKKYASLCDVFVMDAFGTAHRAEGSTYGVAEYAP
                     VACAGPLLAAELDALGKALKEPQRPMLAIVGGSKVSTKLTVLDSLSKIADQLIVGGGI
                     ANTFIAAEGHAVGKSLYEEDLIPEAKRLAQVTNIPVPVDVRVGTEFSETAPATEKAVS
                     EVRADESIFDIGEKSSEQLAEIIRNSKTILWNGPVGVFEFPNFRKGTEVISNAIAEAT
                     ANGAFSIAGGGDTLAAIDLFGIKDKISYISTGGGAFLEFVEGKVLPAVEILEKRANG"
     gene            1335..2411
                     /gene="fbaA"
                     /locus_tag="PXE26_002441"
     CDS             1335..2411
                     /gene="fbaA"
                     /locus_tag="PXE26_002441"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HDL5594976.1"
                     /translation="MSLLNIVKPGVVTGDDVQKVFAYAKEHNFAIPAVNCVGSDSVNA
                     VLETAARVKSPVIVQFSNGGAQFYAGKGIKPASGARADVLGAIAGAKHVHQLAEEYGV
                     PVILHTDHAAKNLLPWIDGLLEAGEKHFAETGRPLFSSHMIDLSEEPIEENMEICREY
                     LARMDKIGMTLEIEIGVTGGEEDGVDNSDVDESKLYTQPSEVLYVYDQLSPISPRFTI
                     AAAFGNVHGVYKPGNVKLKPSILGASQEYVSKERGLPAKSLDFVFHGGSGSSREEIRE
                     AISYGAIKMNIDTDTQWAAWDGILQFYKANEAYLQGQLGNPTGPDAPNKKYYDPRVWL
                     RKMEESMSKRLEQSFEDLNCVNVL"
     gene            2512..3306
                     /locus_tag="PXE26_002442"
     CDS             2512..3306
                     /locus_tag="PXE26_002442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5594977.1"
                     /translation="MALLEVNHLNKRFVERSSLFHKQDFYAVKEVSFTLNRKETLAII
                     GENGAGKSTLAKMVAGMVGPTSGELIFRGTPLSFGDYKYRAKHIRMMFQDPNDAFDPN
                     YNIGQILDAPLRLATDLNEEERNERIFNTLKLVGMYPEQALVPISEASSGQKQRIAFA
                     RALILEPEIIIADDTINSLDFSVKTQLINLMLSVQQRQGIAYIYVGQNLGLIKHIADK
                     IMVMQSGEVVEYGLTKEVLLNPQHQITKRLIESHFGKHLSSYAWAS"
BASE COUNT         1045 a          616 c          737 g          991 t
ORIGIN      
        1 ttagaaactg atataatccg accgttatca cttttaaatt ttaatctaaa gaggaacaaa
       61 ctatgtctgt tattaaaatg actgaccttg atttagcggg taaacgttta tttattcgtg
      121 ctgaccttaa cgtaccggta aaagatggca aagtaacatc agatgcccgt attgttgcta
      181 ccattccaac cttaaaatta gcgttacaaa aaggtgctaa agtaatggta acttcgcatt
      241 taggtcgtcc gacagaaggc gtatttgaag aggaaaactc tttacaacct gtagttgatt
      301 acttaaatgc atcagattta ggtgttcctg ttcgtttagt gcgtgattac ttagacggtg
      361 ttgaagtaaa cgagaatgaa atcgtggtgc ttgaaaacgt gcgtattaac aaaggtgaga
      421 agaaaaacga ccctgagtta gcaaaaaaat atgcatcact ttgtgatgtg tttgtaatgg
      481 acgcattcgg tacagctcac cgtgcggaag gttcaactta cggtgtggca gaatatgccc
      541 ctgttgcgtg tgcaggtccg ttattagccg ctgaattaga tgcattaggc aaagcattaa
      601 aagagccaca acgtccaatg ttagcgattg tgggtggttc taaagtatct actaaattaa
      661 ctgtgcttga ttcgctttca aaaattgccg accaattaat cgtgggcggt ggtattgcca
      721 atacctttat tgccgcagaa ggtcacgctg tgggtaaatc attatacgaa gaagatttaa
      781 tccctgaagc aaaacgttta gcacaagtaa ccaatattcc tgttccggtt gatgtgcgtg
      841 taggtactga attctctgaa actgcaccgg caacggaaaa agcggtgagt gaagtacgag
      901 ctgatgaatc aattttcgat attggtgaaa aatcgtcaga gcaattagct gaaattatcc
      961 gtaattcaaa aaccatcctt tggaatggtc cggtcggcgt gtttgagttc cctaacttcc
     1021 gtaaaggaac agaagtgatt tcaaatgcga ttgcagaagc aacggcaaac ggtgcattct
     1081 caattgccgg tggtggcgat accttagctg cgattgattt attcggtatc aaagacaaaa
     1141 tttcttacat ttcaaccggt ggcggtgcgt tcttagaatt cgtggaaggt aaagtattac
     1201 cggcagtgga aatcttagaa aaacgagcta acggctaaca gttacaagcg gtcaaatttt
     1261 gtgaaaattt tgcaagattt ggccgtatat tttaacaatg tgcttttgca catttcatac
     1321 aaaggaagaa aaaaatgtca ttattaaaca tcgtaaaacc gggtgtagta acaggcgacg
     1381 acgtacaaaa agttttcgct tatgctaaag aacacaactt cgctattccg gcagtaaact
     1441 gcgtgggttc agattcagtt aatgccgtat tagaaacagc cgctcgtgta aaatcaccgg
     1501 taatcgtgca attctcaaat ggtggtgcgc agttctatgc gggtaaaggc attaagccgg
     1561 cttcaggcgc tcgtgcagat gtattagggg cgattgcggg tgcaaaacac gttcatcaat
     1621 tagcagaaga atatggtgtg cctgtgattc ttcacaccga ccacgctgcg aaaaacttat
     1681 taccttggat cgatggctta cttgaagcag gcgaaaaaca cttcgcagaa accggtcgtc
     1741 cgttattctc ttcacatatg atcgatttat ctgaagagcc aatcgaagaa aatatggaaa
     1801 tctgccgtga atatttagcc cgtatggaca aaatcggtat gacccttgaa atcgaaatcg
     1861 gcgtaaccgg tggtgaagaa gatggcgtag ataattctga tgtagatgaa tctaaacttt
     1921 acacccaacc ttctgaagtt ttatatgttt acgaccaatt aagcccaatc agcccacgtt
     1981 tcacgattgc ggcagcattt ggtaacgtac acggtgttta caagccgggt aatgtaaaat
     2041 taaaaccatc aatcttaggt gcttcacaag agtatgtatc taaagagcgt ggtttaccgg
     2101 caaagtcatt agacttcgtt ttccacggcg gttctggttc ttcacgtgaa gagattcgtg
     2161 aagcaatcag ctacggtgca atcaaaatga acattgacac tgacacccaa tgggctgcgt
     2221 gggacggtat tcttcaattc tacaaagcaa acgaagcata tttacaaggt caattaggta
     2281 acccgacagg ccctgatgca ccaaacaaaa aatactacga tccacgtgtt tggttacgta
     2341 aaatggaaga gtctatgtct aaacgcttag agcaatcttt cgaagactta aactgtgtga
     2401 acgttttata atttgcaaaa aattccataa atcaggccgc ttgtataagc ggtctttttt
     2461 tatttatttt ttgcggtaaa ctatcacttt atttccaagc accaatttat tatggcatta
     2521 cttgaagtta atcatctgaa taagcgtttt gttgaacgta gtagcctatt tcataaacaa
     2581 gatttttatg cggtaaaaga agtttctttt accctaaatc gcaaggaaac tttagcgatt
     2641 attggtgaaa acggagctgg gaaatctacc ttggctaaaa tggttgctgg tatggttggg
     2701 ccaacatctg gagaactgat ttttagagga acaccgcttt catttggcga ttataaatac
     2761 cgagctaagc atattcgtat gatgtttcag gaccctaacg atgcctttga tcctaattat
     2821 aatataggac aaattttaga tgctccgctc cgcttggcga cagatttaaa tgaagaggaa
     2881 agaaatgagc gtatttttaa tacgctaaaa ttggtaggaa tgtatcctga gcaagcgctc
     2941 gttcctattt cagaggcttc cagtgggcaa aagcagcgta ttgcgtttgc tcgtgcttta
     3001 attttagaac cggaaattat tattgcggat gatacgatta attcactgga tttttcagtc
     3061 aaaacacaat taattaattt aatgttaagt gtccagcagc gacaagggat tgcttatatt
     3121 tatgtggggc aaaatttagg tctgatcaaa catattgccg ataaaataat ggtgatgcaa
     3181 agtggcgaag tagtagagta tggcttgacg aaagaggttt tactgaatcc gcaacatcaa
     3241 attacgaaac gtttaattga aagtcatttt ggaaagcacc ttagttccta tgcttgggca
     3301 agctaaatct ttactcctgc tctaatatga ttacttgata attttgacct atttcaataa
     3361 atatgcagaa taactctttt caattatta
//
LOCUS       DANLZD010000195         3363 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.196, whole genome shotgun sequence.
ACCESSION   DANLZD010000195 DANLZD010000000
VERSION     DANLZD010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3363
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.196"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(46..1023)
                     /gene="rluD"
                     /locus_tag="PXE26_002443"
     CDS             complement(46..1023)
                     /gene="rluD"
                     /locus_tag="PXE26_002443"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HDL5594978.1"
                     /translation="MTQQKILTAEITADLLGARLDQALAQLFPDYSRSRIKVWIESDL
                     VKVNGNIVNKAREKVFGGETVEITAEIEEEIRFEPQDIPLNIVYEDDDIIVINKPKDL
                     VVHPGAGNPDGTVLNALLHYYPPIAEVPRAGIVHRLDKDTTGLMVVAKNIPAQTHLVT
                     ALQKRRITREYEAIASGIMTQGGKVDEPMARHPTKRTAMAVHPMGKPAVTHYRIMERF
                     RNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQLYGGRPRPPKGASDSFLSVLRGFQR
                     QALHATMLRLEHPITGEMMEWHAPLPDDFIELIQALKADYELYKDQLDY"
     gene            1164..1943
                     /locus_tag="PXE26_002444"
     CDS             1164..1943
                     /locus_tag="PXE26_002444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HDL5594979.1"
                     /translation="MRKFKSLATLVLAGLFVAGCSNSNKELEQSNVQDLYGKGQTYLQ
                     DGDYNSAIRYLEAVGTKGGQYSGLGEQTQLSLIYAQYKVGEYYKALDAAERFARSYPN
                     AANMDYVFYLAGLSNARLSDNFIQDFFGVNRASRAVDNVRNAYGNFQTIVQRYPQSQY
                     AQDAQNWMNYLFNRLAEHELAVVKFYDERNAYVAVVNRIEEMLRFYPNTLATKQALPY
                     LKEAYKQMNIPDAEQKTELLIQEYESKELPNPEKLKYGEQF"
     gene            2016..3047
                     /gene="tsaD"
                     /locus_tag="PXE26_002445"
     CDS             2016..3047
                     /gene="tsaD"
                     /locus_tag="PXE26_002445"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HDL5594980.1"
                     /translation="MRILGIETSCDETGVAIYDEDKGLVANQLYSQIDMHADYGGVVP
                     ELASRDHIRKTLPLIQEALKEANLQPSDIDGIAYTAGPGLVGALLVGSTIARSLAYAW
                     NVPALGVHHMEGHLLAPMLEENAPEFPFVALLISGGHTQLVKVDGVGQYELLGESIDD
                     AAGEAFDKTGKLLGLDYPAGVAMSKLAESGTPNRFKFPRPMTDRPGLDFSFSGLKTFA
                     ANTIKANLNENGELDEQTKCDIAHAFQQAVVDTILIKCKRALEQTGYKRLVMAGGVSA
                     NKQLRADLAEMMKKLKGEVFYPRPQFCTDNGAMIAYTGFLRLKNDEQTDLSISVKPRW
                     AMTELPPIN"
     gene            3129..>3363
                     /locus_tag="PXE26_002446"
     CDS             3129..>3363
                     /locus_tag="PXE26_002446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HDL5594981.1"
                     /translation="MNNYVISLTSAQERRKHIEAEFGKQNIPFQFFDAITPDLIKEKA
                     KAFNIDISNTNLTKGEIACALSHIALWHLAKQQN"
BASE COUNT         1021 a          714 c          662 g          966 t
ORIGIN      
        1 cgatttcaat atagcaactt tacattattt aagcaacacc taaacttaat aatctaattg
       61 atctttataa agctcataat ccgcttttag tgcctgaatc aattcaataa aatcatcagg
      121 taacggggcg tgccactcca tcatttcacc agtaatcgga tgctctaatc tcaacattgt
      181 ggcgtgtaag gcttggcgtt ggaagcctcg taacaccgat aaaaacgagt cactcgcacc
      241 tttaggtggg cgaggtctac cgccatagag ctgatcacct aataatgggt gagcaatatg
      301 cgccatatgt acccgaattt ggtgagtacg ccctgtttct aatcttaaac gtaaacgtgt
      361 gtaattacga aaacgctcca taatacgata atgcgtaacc gccggttttc ccattgggtg
      421 aacagccatt gccgtacgtt tagttgggtg gcgagccatt ggctcatcaa cttttccgcc
      481 ctgtgtcata atgccgctgg caatcgcttc atattcacgg gtaatacgac gtttttgtaa
      541 tgcggttact aagtgagtct gtgccggaat gtttttagcc actaccatta agcctgtcgt
      601 gtctttatcc aatcggtgaa caatccctgc tcgaggcact tctgcaatcg gtggataata
      661 atgtagcaaa gcattcagca ctgtaccgtc cggattacca gcccctgggt gaaccactaa
      721 atccttcggt ttattaatga cgataatatc gtcatcttca tacacaatat ttagaggaat
      781 atcttgaggc tcaaaacgaa tttcctcttc tatttcagcg gtaatttcaa cagtttcacc
      841 accaaatact ttttcccttg ctttattcac gatattgcca ttaactttca ctagatcact
      901 ttcaatccac actttaatgc gtgaacgaga atagtccgga aaaagttgtg ccagagcctg
      961 atctaggcga gcacctagta aatctgcagt aatttctgct gttaaaatct tttgttgagt
     1021 cattaaacca taaatcctaa ttagtcattt gcttacttgc gtgatgttat atagaatagc
     1081 gagatgaact tcataagtta ttcttagtca gaggacattg tacattaact tttcgtccta
     1141 gacacttttt ataggtaaaa catatgcgta aatttaaatc tcttgccaca ttagtattag
     1201 ccggactgtt tgttgcaggt tgttcaaatt caaataaaga attagaacaa tccaacgttc
     1261 aagatcttta tggcaaaggt cagacctatt tacaagatgg agattataat tctgccattc
     1321 gctacttaga agcggttgga accaaaggag gccaatattc aggacttggt gagcaaaccc
     1381 aactaagttt aatttatgct caatataaag ttggcgaata ctataaagca cttgatgccg
     1441 cagaacgttt tgctcgctct tacccgaatg cagctaatat ggattacgta ttctatctag
     1501 caggattatc aaatgcacgt ctaagtgata attttattca agacttcttt ggtgtaaatc
     1561 gcgcctctcg agccgtagat aatgttcgta atgcttacgg taacttccaa actattgtac
     1621 agcgctaccc tcaaagccaa tatgcacaag atgctcaaaa ttggatgaat tacttattta
     1681 accgtttagc ggaacacgaa ttagccgttg ttaaatttta tgatgaacgt aatgcctatg
     1741 tggctgtagt aaaccgtatc gaagaaatgt tgcgttttta cccgaataca ctggcaacca
     1801 aacaagcatt gccatactta aaagaagcat ataagcaaat gaatatccca gatgcagagc
     1861 aaaaaacgga actcttgatc caagaatatg aaagcaaaga gctaccgaat cctgaaaaac
     1921 tgaagtatgg cgaacaattc tagtcgtaca gagaataatg tgaggggcgt tcttcgcccc
     1981 ttttggtttt ctaacttatt ttgacttctc caactatgcg aattttaggt attgaaacct
     2041 cttgtgatga aaccggtgtt gccatttatg atgaagacaa aggcttagtg gcaaaccagc
     2101 tttatagcca aattgatatg cacgccgatt acggtggcgt agtccctgaa ctggcttctc
     2161 gagaccatat ccgtaaaacg ttgccactaa ttcaagaagc cttaaaagag gccaatctgc
     2221 aaccctcgga tattgacggc attgcctata ctgccggccc aggcttggtc ggggctttat
     2281 tggtcggctc aaccattgcc cgttcgctgg cttatgcttg gaatgttccg gcattgggcg
     2341 ttcaccatat ggaagggcat ttacttgccc caatgttgga agaaaatgcc cctgaatttc
     2401 cgtttgtggc attattgatt tcaggtggac acacccaact ggtaaaagtt gacggcgttg
     2461 ggcaatacga actactcggg gaatcaattg atgatgctgc cggtgaagcc tttgacaaaa
     2521 caggcaaact actcggtttg gattaccctg ccggtgtagc gatgtcaaaa ttagccgaat
     2581 ccggcacgcc aaatcgtttt aaattccctc gtccaatgac cgacagaccg ggactggatt
     2641 tcagtttctc cggtttaaaa acctttgctg cgaatacgat taaagccaat cttaatgaaa
     2701 atggtgaact cgatgagcaa accaaatgcg atattgccca cgcattccaa caagccgtgg
     2761 ttgatactat tttaattaaa tgcaagcgag cgttagagca aaccggctat aaacgcttag
     2821 taatggcagg cggcgtaagt gccaataaac aattacgagc agaccttgcg gaaatgatga
     2881 aaaaattaaa aggcgaagta ttctaccctc gcccacaatt ttgcactgac aacggcgcaa
     2941 tgattgccta cactggcttt cttcgcttaa aaaacgatga acaaaccgac ttaagcatta
     3001 gcgtaaaacc ccgctgggct atgaccgaat taccaccgat taattaacct ttcaagcggt
     3061 gaaatttctt gttaattttg caaaaattta atcaaaaata accgcttgct atatgataga
     3121 ttaaatttat gaataattat gtaattagcc taacctccgc acaggagcgt agaaaacata
     3181 ttgaagctga attcggcaaa caaaatattc cttttcaatt tttcgatgcg attacgccgg
     3241 atttaattaa agaaaaagcc aaagcattta atattgacat ttcaaataca aacttaacaa
     3301 aaggtgaaat agcctgtgct ttgagtcata ttgcattatg gcatttagcc aaacaacaga
     3361 att
//
LOCUS       DANLZD010000196         3347 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.197, whole genome shotgun sequence.
ACCESSION   DANLZD010000196 DANLZD010000000
VERSION     DANLZD010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3347
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.197"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            132..1115
                     /gene="epmA"
                     /locus_tag="PXE26_002447"
     CDS             132..1115
                     /gene="epmA"
                     /locus_tag="PXE26_002447"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HDL5594982.1"
                     /translation="MNNLQLDNIDWQPTASIPHLIQRSKIITEIRKFFTDRGLLEVET
                     PILSEFSVTDVHLSTFNTQFQSPFSPEAKTLHLMTSPEYHMKRLLAAGSGPIFQLCKV
                     FRNEEAGKRHNPEFTMLEWYRPHFDMYRLINEVDDLLQQILDCEPAESFSYQFVFQTY
                     VGLDPLSATKAQLVEKARKHGLQCDDDEQRDTLLQFLFSEVVEANIGQERPTAVYHFP
                     STQAALAQISSEDHRVAERFEFYYKGLELCNGFHELDDADEQIHRFEQDNLQREKMGL
                     EPQQLDVRFLAALKAGFPNCSGVALGVDRLLMLAMDAEKIEEVISFGIEKA"
     gene            1197..2087
                     /gene="rarD"
                     /locus_tag="PXE26_002448"
     CDS             1197..2087
                     /gene="rarD"
                     /locus_tag="PXE26_002448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL5594983.1"
                     /translation="MNISGKLQGWHYALLCYLTWGTFPIYWYPINQSGMPAEQILAQR
                     VLWSALFAVFLLLIFQQGRAVINAFKQPKVLGLFVLSSFMIGVNWLVYLWAIVNEHIL
                     DASLGYFINPIFNVFVGRLILKEQLNKAQLLALLFAISGILWLAIPAGQIPWVALILA
                     ASFCIYGLIRKLAPMEPLSGLALETLLMSPFAITYLCFCYHQNILVFSELNPLQMAVL
                     LCSGIATTLPLLWFAMGARRISMSLLGMLQYISPTLQFLCGVLIFNETLSAERAVGYI
                     LVWIGVGVFLLGMKKAGVKR"
     gene            complement(2098..2709)
                     /locus_tag="PXE26_002449"
     CDS             complement(2098..2709)
                     /locus_tag="PXE26_002449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5594984.1"
                     /translation="MKYEAKPLIISPNHIQQRLHGKLLARALLIIALLMLAKFIYIAS
                     LSNYFTFYLMEKFQLNIAMAQLSLFTFLGAVALGAFVGGPIGDKIGRNAVIWFSFLGM
                     APFALLLPHADLFWTIVCAIFAGFIMSSAFSAMVVYAQEAVPGRVGLISGTMFGLMFG
                     IGGLSAAVLGFFADEYGLESIFKACAYLPLLGFAALGLPKRNI"
     gene            complement(2737..3272)
                     /locus_tag="PXE26_002450"
                     /pseudo
     CDS             complement(2737..3272)
                     /locus_tag="PXE26_002450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251153.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT          986 a          724 c          687 g          950 t
ORIGIN      
        1 atgtttaaaa tgagaaaatt taatttgttg caaaaaagtt aaaaccctct ctttattttt
       61 cttgatcggt aactagggca actcactttt ttaggctaaa atagcctcac attttcaagc
      121 ggtcattttt tatgaacaat ttacaactcg ataatattga ttggcaacca acagcctcta
      181 ttcctcacct gatccaacgt tcaaaaatca ttacggaaat ccgcaagttc tttaccgatc
      241 gagggctttt agaggtagaa accccgattt taagcgaatt ttcggtgaca gacgttcatc
      301 tttcgacttt caatacgcag tttcaatcgc ctttttcccc tgaggcgaaa acactccatc
      361 tgatgaccag cccggaatat catatgaagc gactacttgc tgctgggagt ggaccgattt
      421 tccaactgtg taaagtattt cgcaacgagg aagccggtaa gcgacacaac cctgaattta
      481 cgatgctgga gtggtatcgc ccgcattttg atatgtatcg cttaatcaat gaagtggatg
      541 atttactgca acaaattttg gactgcgaac cggcagaatc attcagctat caatttgtgt
      601 tccaaaccta tgtcggatta gatccgcttt ctgccaccaa agcacaactt gtggaaaaag
      661 cccgaaaaca cggcttgcaa tgtgatgatg atgaacagcg tgacaccttg ttacaatttt
      721 tattcagcga ggttgtcgaa gccaatatcg ggcaagaaag accaactgcc gtttatcatt
      781 tcccttccac ccaagcggca ttagctcaaa ttagctcgga agatcaccgt gttgccgaac
      841 gttttgagtt ttactacaaa ggcttggaac tctgtaacgg cttccacgaa ttagacgatg
      901 ctgatgagca aattcatcgc ttcgagcaag ataatctgca acgtgaaaaa atggggctgg
      961 agccacagca actagatgtg cgttttcttg ccgcactcaa agcgggtttt ccaaactgct
     1021 caggtgtcgc ccttggggtt gataggctgt taatgctggc aatggatgcg gaaaaaattg
     1081 aagaggttat ttctttcggc attgaaaaag cctaattttt tatgccgttt tgtgatttgc
     1141 aatttgcaaa aaaatcgaca aatatgaccg cttgtacact cgtttaggaa agcaaaatga
     1201 atatttcagg caaattacag ggttggcact atgccctact gtgctactta acttggggaa
     1261 cctttccgat ttattggtat ccgatcaacc aatcgggaat gcctgccgag caaattttgg
     1321 ctcaacgggt gctttggtct gccctatttg ctgtgtttct gctgctgatt ttccaacaag
     1381 ggcgagcggt tattaatgcc tttaaacagc caaaggtact cgggctgttc gtgctttctt
     1441 cttttatgat tggcgtgaac tggctggttt acttatgggc aatcgtcaat gagcatattt
     1501 tagatgccag tctaggttat tttatcaacc ccattttcaa cgtgtttgtc ggtaggctta
     1561 ttctaaaaga gcagctgaat aaagcccaat tattggctct gctgtttgca attagcggca
     1621 ttttatggct tgctattcct gccggacaaa ttccgtgggt cgcattgatt ctagccgcca
     1681 gtttctgtat ttacgggctg attcgtaaac ttgccccaat ggaacctttg tctggtttgg
     1741 cgttagaaac tttgctgatg tcgccttttg ccatcaccta tctctgcttt tgttaccacc
     1801 aaaacatttt ggtattcagt gaactcaatc ctttacaaat ggcagtgcta ctctgctccg
     1861 gcattgccac taccttacca ttgctatggt ttgcaatggg tgcaagacgc atttcaatgt
     1921 cgctactcgg tatgctgcaa tatatttcac ctaccctgca atttttatgc ggtgtgctga
     1981 tttttaatga gacactttcc gccgaacgtg ctgtaggcta cattctggtt tggattgggg
     2041 tgggggtttt cttattgggt atgaaaaaag ctggtgtcaa acgctaaaaa taaaacgtta
     2101 aatatttcgt tttggtagcc ctaatgcagc aaaaccaagt agtggcaaat aggcacaggc
     2161 tttaaaaata ctctccaagc catattcatc cgcaaaaaaa cccaatacgg cggcacttaa
     2221 gccgccaata ccaaacatta aaccgaacat tgtgccggaa atcagcccta ctctgcctgg
     2281 tacggcttct tgagcataaa ccaccatagc ggagaacgct gatgacataa taaaaccggc
     2341 aaaaatcgca cacacaatcg tccaaaagag atctgcgtga ggcaacaaca aagcaaaagg
     2401 tgccatacct aagaaagaga accaaatcac cgcatttcgt ccaatcttat cgccaatcgg
     2461 cccgccgaca aaagcgccta aagcaactgc acctaaaaag gtaaatagag agagctgtgc
     2521 cattgctata ttgagttgga atttttccat taaataaaag gtgaaatagt tactgaggct
     2581 cgcaatataa ataaatttcg ctaacatcaa taaagcgata attaataatg ctctggctaa
     2641 taatttaccg tgtaagcgtt gttgaatatg gtttggtgaa ataatgagcg gtttggcttc
     2701 atatttcacc caacggctta ctttatataa aacccatcat aatgccaata atacaaatgc
     2761 aacaacccaa atcaccgcac tttgccctaa cggcacaata aataatgcaa ctaagagcgg
     2821 acctaacgcc gatccactgt ttccacctac ttggaaaagc gactgagctg taccaaattt
     2881 accgcccgat gccattcgag ccacccgaga ggcttcaggg tgaaaaatgg cagagcctat
     2941 ccccattaac gcagcggcta tcagtaacac gccaaaattc ggcgaaaagg caagtaaaat
     3001 cacggaaaga agcgtaatca gcatactgac gggcaataaa ttcggttttg ggtatcggta
     3061 taaagcccaa tacccggctg aataatagat gcggtaattt gataaatgag tgaaatcata
     3121 ccaatttgag caaaactcag ttggtaattt tcttttagca ttggatagat cgaaaccatt
     3181 actgcttgaa ctaaatcatt caacaaatga gaaagggaaa tcagcagtaa aatgggcaaa
     3241 accatttttt gagcgttatg ttgtgtgtgc attctttatt cgttttttat aaatgaaaaa
     3301 tattctactc gcaaataatg aatgtgcaag cggtcaaatt tcccgat
//
LOCUS       DANLZD010000197         3216 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.198, whole genome shotgun sequence.
ACCESSION   DANLZD010000197 DANLZD010000000
VERSION     DANLZD010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3216)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3216)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3216
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.198"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            6..842
                     /locus_tag="PXE26_002451"
     CDS             6..842
                     /locus_tag="PXE26_002451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5594985.1"
                     /translation="MLFACINTLIPKLTSISPIDSNVIALVQYLAAFIFLVPSMNNIG
                     FFSSLKTEHFGQHCFRIFLSAIGIQCWTMALANQLPIWQGIALLMTSPLFVTIGSGLF
                     LKEKVDKKRWIATAMGFVGAMIILEPWSDHFEMIALLPIAAAFFWAGYSLMVKKLSRY
                     DSPTTMVAYLFILITPFNLLIALTNLSPSGFSLPSWSDFGFLILLGFFTALAQLAVAK
                     AYSVADASYIQPFDFIKLPLNVLAGWLVFNWVPPGKLWLGAAIIIAATIYITHAETKQ
                     SN"
     gene            complement(921..1412)
                     /gene="ilvN"
                     /locus_tag="PXE26_002452"
     CDS             complement(921..1412)
                     /gene="ilvN"
                     /locus_tag="PXE26_002452"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HDL5594986.1"
                     /translation="MRRTLAVLLENESGALSRVVALFSQRGFNIESLTVAPTDDPSLS
                     RMTIVAQGEEQVLEQIEKQLHKLIDVFKVSNLSAYEHVEREVLLVKVRATGSSRDELK
                     RMVDIYRGQIVDLTPKLYTIQLSGSTEKLNAFIEAVKEETTIVEIVRSGVISLSRGDK
                     NAL"
     gene            complement(1405..3126)
                     /locus_tag="PXE26_002453"
     CDS             complement(1405..3126)
                     /locus_tag="PXE26_002453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 large subunit"
                     /protein_id="HDL5594987.1"
                     /translation="MKKLSGAEMIVQSLKDEGVEYVFGYPGGSVLDIYDAIHTLGLNH
                     VLVRHEQGAVHMADGYARSTGKVGCVLVTSGPGATNTITGILTAYTDSVPLVILSGQV
                     PSSLIGTDAFQESDMIGISRPVVKHSFLVKNTEEIPEIIKKAFYIASTGRPGPVVIDI
                     PKDVVNPLNKYPYEYPQEVSMRSYNPTVQGHKGQIKKALKALLVAKRPVLYVGGGVIS
                     AEGSPEITEFAQKLNLPVTCSLMGLGAYPASDKQYLGMLGMHGTFEANNAMHESDLIL
                     GIGVRFDDRTTNNLAKYCPNAKVIHVDIDPASISKTVQAYIPIVGSAKDVMEEFLSLL
                     GEENLAKNQVDLTAWWQQIDAWKARNCLAFEENSDVIKPQQVIRMIHKLTNGEAYVAS
                     DVGQHQMFAALHYGFDKPRRWINSGGAGTMGFGLPAAMGVKFAHPDATVVCVTGDGSI
                     QMNIQELSTAKQYDTPIVIVSLNNRFLGMVKQWQDIIYSGRHSQVYMNSLPNFAKLAE
                     AYGHVGIQIDHPSELEAKLTEAFSIKDKLVFVDVLVDETEHVYPMQVRGGAMNEMMLS
                     KTERTDA"
BASE COUNT          885 a          696 c          604 g         1031 t
ORIGIN      
        1 ccggtgtgtt atttgcctgt atcaatacct taattcccaa attaacgtcc atttcaccga
       61 ttgactcgaa cgtgattgca ttggtgcaat atttagctgc ctttattttc ctcgttccca
      121 gcatgaataa tatcggtttc ttctcttcat taaaaaccga gcattttggg caacactgtt
      181 tccgtatttt tctatctgcg attggtattc aatgttggac aatggcactc gctaaccaat
      241 tacctatttg gcagggaatt gcgttattga tgacttctcc attgtttgtg accatcggct
      301 ccggtctgtt tttgaaagag aaagtggata aaaagcgttg gattgcaacc gcaatggggt
      361 ttgttggggc gatgattatt ctagagcctt ggagcgatca ttttgaaatg attgcgttac
      421 tgccgattgc cgcggctttt ttctgggcag gttattcgct aatggtgaaa aaactctctc
      481 gttacgatag cccaactacg atggtcgctt acctgtttat tctaattacg ccttttaatt
      541 tgttgattgc actcacgaac cttagcccta gtgggtttag tctgccttct tggagcgatt
      601 tcggcttttt aatcttactt ggtttcttta cggcgttagc gcaactggcg gtagccaaag
      661 cctacagtgt agcagatgct tcctacattc agccgtttga ttttattaaa ttacctttga
      721 acgtattagc cggttggctt gtatttaact gggtgccacc gggtaaatta tggctaggag
      781 ctgcgattat tattgctgcg accatttata ttactcacgc tgaaactaaa cagagtaatt
      841 agcaacaaat tcacgctaca taaaaatccc tttatctcaa agataaaggg atttgcaaat
      901 tttaagctaa aattgaccgc ttacagagcg tttttatcgc cacgagatag actaatcacg
      961 ccagagcgaa caatctctac aatcgttgtt tcttctttaa ctgcctcaat aaatgcattg
     1021 agcttctcgg tagaaccgga taattgaatg gtgtaaagtt tcggtgttaa atctacgatt
     1081 tgcccacggt aaatatctac catacgtttc agttcatcac gagatgaacc tgtagctcgc
     1141 acttttacca ataacacttc acgctcaacg tgttcataag cacttaagtt actcacttta
     1201 aacacatcaa tgagtttgtg tagttgcttt tcgatttgtt ctaacacctg ttcttcgcct
     1261 tgcgcgacaa ttgtcatacg ggaaaggctt ggatcatcag taggggcaac ggtcaagctt
     1321 tcaatgttaa aaccacgctg cgagaaaagg gcaactacac gagataatgc acctgattca
     1381 ttttctaata atacggctaa tgttctacgc atctgttctc tccgttttac ttaacatcat
     1441 ttcattcatt gctcctccac gcacttgcat tgggtaaaca tgttccgttt catcgaccaa
     1501 tacatcaaca aatacaagct tatctttaat tgagaatgcc tcagttaatt ttgcctccaa
     1561 ttcagaaggg tggtcgattt gaatcccaac gtggccataa gcctctgcta atttagcaaa
     1621 gttaggtaga gaattcatat acacctgtga atggcggcca gagtaaataa tatcttgcca
     1681 ctgtttcacc atacctaaga aacggttatt taagctgaca atcacaatcg gtgtgtcgta
     1741 ttgctttgcg gtggaaagtt cctggatatt catttggata ctaccatcac cggttacaca
     1801 aacaacagtg gcatcagggt gggcaaattt tacccccatc gcagcaggta agccaaagcc
     1861 cattgtgcct gcaccgcctg aattaatcca acgacgtggt ttatcgaacc cataatgcaa
     1921 tgcagcaaac atttgatgtt gtccaacatc tgaggcaaca taagcctccc cattggtcaa
     1981 cttgtggatc attctaatca cttgttgtgg cttaatcaca tcactgtttt cttcaaaggc
     2041 taagcaatta cgagctttcc aagcatcaat ttgttgccac caagcggtta aatctacctg
     2101 attttttgca agattttcct cacctaataa agataaaaat tcttccatta catccttagc
     2161 actgcctaca attggaatat aagcttgtac tgttttggaa attgaggctg gatcaatatc
     2221 cacgtggatc acttttgcat tcgggcaata ttttgctaag ttatttgttg tacgatcatc
     2281 aaaacgtacc ccaataccta aaatcaaatc actttcgtgc attgcattat ttgcctcaaa
     2341 agtgccgtgc atgcctaaca tacctaaata ttgcttatca gaggcaggat aagcacctaa
     2401 tcccattaat gaacaggtta caggtagatt tagcttttgt gcaaactctg taatttctgg
     2461 cgaaccctct gcactaatta caccaccgcc tacataaagc actggacgtt ttgctactaa
     2521 tagtgctttt aatgcttttt taatttgccc tttatgccct tgaactgttg ggttataaga
     2581 acgcattgat acttcttgcg gatattcata gggatattta tttaatggat tgactacatc
     2641 tttaggaata tcaataacta ccgggcctgg tcgaccggtt gatgcaatat aaaaggcttt
     2701 tttgataatt tcaggaattt cttctgtatt ttttactaag aaactgtgtt ttacaaccgg
     2761 acgagaaatg ccgatcatat cactttcttg gaatgcatct gtcccaatta aacttgatgg
     2821 aacttggccc gacagtatta ctaacggaac agagtcggta taagcagtta aaataccagt
     2881 aattgtattc gttgctcccg gacctgaagt cactagcaca cagccgactt tacctgttga
     2941 acgggcatag ccatcagcca tatgtacagc accttgctcg tgtcgaacta aaacgtgatt
     3001 caatccaagt gtatgaattg catcataaat atcgagtaca gagccacccg gatagccgaa
     3061 aacgtattct acgccttcat cctttaagga ctgtacaatc atttctgcac cagaaagttt
     3121 tttcattgaa tcctccaaca aaatagcatt ttcttctcta agatggttgg attttgcagt
     3181 aaaattttat tgatgtctag ttcttattat gggatc
//
LOCUS       DANLZD010000198         3191 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.199, whole genome shotgun sequence.
ACCESSION   DANLZD010000198 DANLZD010000000
VERSION     DANLZD010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3191
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.199"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(4..576)
                     /gene="pdxT"
                     /locus_tag="PXE26_002454"
     CDS             complement(4..576)
                     /gene="pdxT"
                     /locus_tag="PXE26_002454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HDL5594988.1"
                     /translation="MKIAILALQGAFSEHTDKLQQLGVESMEIRQLADLNQDFDGLIL
                     PGGESTVQGKLLRELGLLEPLRQKILNGLPTLGTCAGLILLAENLVNDDKKHLATLPV
                     TVKRNAYGRQLGSFLVEEEVKYLGKIPLTFIRAPYIESTGKDVEILAKISGKIVGVKY
                     QNQIGISFHPEVNNDLSFHRYFVEMCRKNK"
     gene            complement(576..1448)
                     /gene="pdxS"
                     /locus_tag="PXE26_002455"
     CDS             complement(576..1448)
                     /gene="pdxS"
                     /locus_tag="PXE26_002455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HDL5594989.1"
                     /translation="MTNRYDLNRQLAQMLKGGVIMDVTTPEQACIAEEAGACAVMALE
                     RIPADIRAAGGVSRMSDPKMIKSIQAAVSIPVMAKVRIGHVTEAQILQAIEIDYIDES
                     EVLSPADDTFHINKRKFEVPFVCGAKNLGEALRRINEGAAMIRSKGEPGTGNVVQAVH
                     HLRKMKQEIARLVSHTTDELYHVAKELQVPFDLVQYVHQYQKLPVVTFAAGGVATPAD
                     AALMMQLGAEGVFVGSGIFKSGDPAKRARAIVQAVTNYNDPKLLAELSEDLGEAMVGI
                     NEQEIELLMAARGV"
     gene            1659..3062
                     /locus_tag="PXE26_002456"
     CDS             1659..3062
                     /locus_tag="PXE26_002456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HDL5594990.1"
                     /translation="MLTYTFNTQEGTALYEQLYRFLKNDIESNILIAGDKLPSKRAFA
                     KHLGISVMTVETAYQQLVAEGYVNTQPKKGFFVNALNLPEKKEAISVQLQKISSEQYE
                     KNKKWQADLTNRQTLAENFPFSVWTKLVREVLKTHQSELMERAESGGVWTLKFAIANH
                     LRAFRGMIVNPTQIIIGAGTEYLYGLLIQLLGLDKHYALTEPSYDKLRRIYHSYRLST
                     ATVSMPFSIDELNSKNVDVIHTSPSHHFPTGHVMPIAKRYELLAWVAQKAERYIVEDD
                     YDSEFRFVGQPIPALKSIDMLGRVIYMNTFSKTLSSTVRIAYMVLPPELLNRFQQELG
                     FYASTVSNFEQYILAEFIQQGYFEKHINRMRAYYQKKRDKLLKAFKQGNLAEKIAIKE
                     EHSGLHFIVQLNTTLTERQILQAAEEQGIKFVALSAYYQDKSQIQQNAFIIGYSNLKD
                     DQINYVAESLKKILDNE"
BASE COUNT          991 a          636 c          584 g          980 t
ORIGIN      
        1 cttttactta ttttttcggc acatttccac aaaatagcgg tgaaaactta aatcattatt
       61 cacttcggga tggaaggata tacctatctg attttggtat tttactccaa caatcttacc
      121 gcttatcttg gctaaaattt ctacatcttt tccagtgctt tctatataag gcgcacgaat
      181 gaatgtgaga ggaattttac cgagatattt aacttcttct tctactaaaa acgagcctaa
      241 ttgccttccg taagcattac gtttcactgt tacaggcaaa gtagccaaat gttttttatc
      301 gtcgtttacc aaattttccg caagcaaaat taaacccgca caagttccaa gcgttggcaa
      361 gccatttaaa attttttgac gaagcggctc aagcaagcct aattcacgta ataatttacc
      421 ttgaacagtc gattcgccac caggtaaaat cagaccatca aaatcttggt ttaaatcagc
      481 aagttgacga atttccatac tttcaacccc tagttgctgg agtttatcag tatgctcgct
      541 aaatgcacct tgcagagcaa gaatagcaat tttcattaga cacctcttgc tgccattagc
      601 aattcaatct cttgctcatt aattcctacc attgcttcac ctaaatcttc agaaagctcc
      661 gcaagtaatt taggatcgtt gtagttggta acagcttgta caatggcccg cgctcgttta
      721 gcaggatcgc ctgacttgaa aatacctgag ccaacgaaga ctccttctgc acctaactgc
      781 atcatcaatg cagcatcggc aggggttgca acacctccag cagcaaaggt gacaacaggc
      841 aatttttggt actgatgtac atattgtact aaatcaaatg gtacttggag ctctttagct
      901 acgtgataaa gttcatctgt ggtatgtgaa accaagcggg caatttcttg tttcattttg
      961 cgaagatgat gtactgcttg caccacattg cctgttcctg gctcgccctt actacggatc
     1021 atagcagcgc cttcattaat acgacgtagg gcttcgccta aattttttgc tccacataca
     1081 aatggcactt caaatttacg cttgttaatg tggaaggtat catctgcagg agaaagcacc
     1141 tcactttcgt caatatagtc aatttcgatc gcttgcagga tttgtgcttc tgtaacgtgt
     1201 ccaatacgta ctttcgccat tacaggaatg gataccgctg cttggatact ctttatcatc
     1261 ttgggatcac tcatacgaga aacgccacca gctgcacgaa tatctgcagg aattctctct
     1321 agtgccatta ctgcacaagc tccagcttct tccgcaatgc aggcttgctc aggggtagtt
     1381 acatccataa ttacaccgcc ttttaacatt tgagcaagtt gtctgtttaa atcatagcga
     1441 ttagtcattg tactttttcc ttctaattgt tgaataattg aacttttcgt agtttcgatt
     1501 agctcggcat taagtttatt tttatattcg ctggatgcga gtgttcatct accaatttaa
     1561 atacactcag ccaatttgag tgaggaaaca gcatgtattg taatttaatc tgaactgttt
     1621 aaaatgacca ttttatgttt ttcttatcat gtcagattat gcttacctac acttttaaca
     1681 cacaagaagg caccgctctc tatgagcaac tttaccgttt tctaaaaaac gacattgaaa
     1741 gcaacatact tatagcaggg gataaactgc cgtctaaacg ggcttttgca aagcatttag
     1801 gcatttcagt aatgacagtg gaaacagctt accaacagtt agtagcagaa ggttatgtga
     1861 atactcagcc taaaaaaggc ttttttgtga atgctttaaa tttaccagaa aaaaaggaag
     1921 ccatatcagt tcagctacaa aaaatcagtt cagaacagta tgagaaaaat aaaaaatggc
     1981 aggcagattt aactaatcga cagactttag cagaaaattt tccgttttcg gtttggacaa
     2041 aattagtacg cgaagtgctg aaaacacacc aaagtgagct aatggagcgt gctgagagtg
     2101 ggggcgtatg gacattaaaa tttgcgatag ccaatcatct tcgagccttt agaggaatga
     2161 tcgttaatcc aacacagatt attattggag cgggtacgga gtatctttac ggtttgctca
     2221 ttcagcttct aggcttagat aaacattatg cactaactga gcccagttac gataaattgc
     2281 gcagaattta tcacagttat cgcttatcaa cagccacagt atcgatgcca ttttcaatcg
     2341 atgagttaaa ttcaaagaat gtggacgtga tacatacctc gccatcacac cattttccga
     2401 caggacacgt aatgccgatt gccaaacgtt atgagttgtt agcttgggtt gcacaaaaag
     2461 ctgaaagata tattgtagaa gacgactacg acagcgaatt tcgttttgta ggacaaccaa
     2521 ttcctgcatt gaaatctatt gatatgctcg ggcgagttat ctatatgaat actttttcta
     2581 aaacgctctc ttcaactgta cgaattgcct atatggtttt gccaccagaa ttactgaatc
     2641 gttttcagca ggaattaggg ttttatgctt ctaccgtttc caattttgag caatatattt
     2701 tggcagaatt tattcaacaa ggctattttg aaaagcatat caatcgaatg cgagcgtatt
     2761 atcaaaaaaa gagggataaa ttactaaaag ctttcaagca aggcaattta gcagaaaaga
     2821 ttgcaataaa agaagaacat tcaggcttgc atttcattgt acagctaaac acaacattaa
     2881 cagaaaggca aattttgcag gcagcagaag aacaaggtat aaaatttgtc gcattgtctg
     2941 cttattatca agataaatct caaattcagc aaaatgcttt tataattggg tactctaatt
     3001 taaaagatga tcagattaat tatgtagcag agagcctgaa aaaaatttta gacaacgaat
     3061 agcaagtatc aaaactgctt taatttttag caaattgcct taaaaacacg caagtggtaa
     3121 ttattttagt gatttttgca aaaaattacc aaattctcct tgcaaggcat tttgttttgc
     3181 gtataatgca t
//
LOCUS       DANLZD010000199         3155 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.200, whole genome shotgun sequence.
ACCESSION   DANLZD010000199 DANLZD010000000
VERSION     DANLZD010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3155)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3155)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3155
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.200"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            91..681
                     /locus_tag="PXE26_002457"
     CDS             91..681
                     /locus_tag="PXE26_002457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594991.1"
                     /translation="MTTQITTAQINDLLKSHDIQGYANEWQGRRIYINLSAKNNESRG
                     DRNYQLYIDLATGELVSKLGKGLTTREFDAAVKAFENAFNAKDTAENTSPAESKETEQ
                     ENKQETTKLVITKPTLKGSEKQIAWADEIINLFIAKIGDTSIPVTATQEQITQAQAMV
                     DNFFAMTNAGKWIEKFKGLNDSSEPKQFWLSVKYGW"
     gene            751..1269
                     /locus_tag="PXE26_002458"
     CDS             751..1269
                     /locus_tag="PXE26_002458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594992.1"
                     /translation="MTTQVTPQIMRIIGQIVAATYGDDVPTNVQTIILRYPIRGIGFI
                     SSRRELSINNGEIARLMDKIPGDLEDPKDGMPFDCQGAFWLGYYQYCKLSNDVKNYTS
                     KELSIIGESLYGTQWQSNLARDLRLSDARRVREWVAGERKIPFGVWADLTELVKAKKA
                     NLSSILKKLTID"
     gene            complement(1416..1655)
                     /locus_tag="PXE26_002459"
                     /pseudo
     CDS             complement(1416..1655)
                     /locus_tag="PXE26_002459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249173.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1816..2109)
                     /locus_tag="PXE26_002460"
     CDS             complement(1816..2109)
                     /locus_tag="PXE26_002460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594993.1"
                     /translation="MTTFNKILNPMYSTIASYSTQDDGSLNAKYVVGTGDDTDGEVTN
                     FVIITSEYKYIDAQSAKAITDAPLTKEDIGKTPTQIMLGRIYKHLKETGQIVV"
     gene            complement(2224..2823)
                     /locus_tag="PXE26_002461"
     CDS             complement(2224..2823)
                     /locus_tag="PXE26_002461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594994.1"
                     /translation="MSYGLSTFNINENFRSLSLQRKGRANFSNKIATIQAASDEIIVI
                     KYSDGQVCLLYRENGIATLATENATFAEYLIFSTNVPKSGGYGIEVYNSAGNVVFSSN
                     HKFLRPIEYVDLNPSKNVFRFTGQANRQYGIILSNFGFDFVINYDNGYSTSRSAKVSG
                     NFIEFGFCKYHYSGLYKTGMSYNSKAMYFNALVVDITGY"
     gene            complement(2824..>3155)
                     /locus_tag="PXE26_002462"
     CDS             complement(2824..>3155)
                     /locus_tag="PXE26_002462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5594995.1"
                     /translation="IQTFDTANVSTFSTNERLFKYIGTKNIKYGKFSFTVTEKYEGQL
                     VFIISMLHSVHRKQATGYKTNIPNLIHLENVSINDKTISGEVVCIFPFSLPADDSDYI
                     QIVYGAY"
BASE COUNT         1041 a          587 c          574 g          953 t
ORIGIN      
        1 tcttgcaata aaattattat gcgcctataa ttaggctcat aaagcaaggc tagggagcca
       61 gctaataacc atcagccaaa gggggctaaa atgacaactc aaattacaac cgcacaaatc
      121 aacgacttat taaaatctca cgatatccaa ggctacgcca acgaatggca aggtcgccgc
      181 atttacatta acctttcagc aaaaaataac gaaagcagag gtgatcggaa ttatcagttg
      241 tacattgact tagccacagg tgagttagtg agcaaacttg gcaaaggatt aacaacaaga
      301 gagttcgacg ctgccgtaaa agcatttgag aacgctttta atgctaaaga caccgctgaa
      361 aatacatcgc cagcagaaag caaagaaaca gagcaagaga acaaacaaga aacaactaag
      421 cttgtaatca caaaaccaac attaaaaggc tctgaaaaac aaatcgcttg ggcagacgaa
      481 atcatcaatc tttttattgc gaagattggt gatacctcta tcccagtaac agcaacgcaa
      541 gaacaaatta ctcaagctca agcaatggta gataattttt ttgcaatgac aaacgctgga
      601 aagtggatcg aaaaatttaa aggtctaaat gatagtagcg aaccaaagca attttggtta
      661 tccgtaaaat atggatggta gattgagata acaaataagc cgtaagagca aaggcttacg
      721 gctaaaacaa acagataact ggagattatt atgactacac aagtaacacc acaaattatg
      781 cgcattatcg ggcaaattgt cgctgctact tatggtgacg atgtgccaac aaacgtacag
      841 acaataatct tgagataccc tataagaggg atagggttta tctctagtcg cagagagcta
      901 tctattaaca atggagagat agcaagatta atggataaaa taccaggcga cctcgaggac
      961 cctaaagacg ggatgccttt tgattgtcag ggggcgtttt ggcttggata ctatcaatac
     1021 tgcaaattaa gtaacgatgt aaaaaattac acatcaaaag agctatccat cattggcgag
     1081 tcattgtatg gcactcaatg gcagtctaat ctagcgagag atttgagatt atctgatgct
     1141 cgccgtgtcc gcgaatgggt ggctggtgaa cgtaaaatcc ctttcggggt ttgggctgat
     1201 ttgaccgaat tggttaaagc caaaaaagct aacttatcat caattcttaa aaaattaaca
     1261 atagattagc actgacttta aagcccctct cggggcttaa ttatagaaaa taaaatcaca
     1321 atggctaatt ttgccaaatt tgcctgttaa aacgtgcgaa aaattacaaa aaacggctag
     1381 agctatagcc gttttgagtg cagatgttaa cagagttaag ctctagcacg tcctgggcct
     1441 tgatactgca caccatcagt taaatgatct tgattttcgg ttgctgctac agcagattct
     1501 gatcttacat ttaaactttg tgactgttgt aatgcatcaa taagtttatt taccactgtt
     1561 ccgagtgttt taatttgctc ggtttgctca ttaatagtct gctttaactc ttgcagtttt
     1621 aatgattgct catccacaac cactaatcga cggttagctc aatttgaggc tctgtgctgc
     1681 cctctactat ggcgtgtaaa tccagcctaa taccctctaa atttacaggc tcgccatttg
     1741 tttgcctaaa aaaaaggcga taacttacgt catcgcctct gaaaaactta aatttatgct
     1801 tttgcattta gacccctaca ctacaatctg ccccgtctct tttaagtgct tatagatacg
     1861 acctaacata atctgcgttg gcgttttgcc aatatcctct tttgttagcg gtgcatctgt
     1921 aatcgctttg gctgattgag catcaatata tttgtactca cttgtgatga ttacaaagtt
     1981 tgttacctcg ccatcggtat catcacctgt gccaacaaca tacttagcat tgagtgagcc
     2041 gtcatcttga gttgagtaac ttgcgatagt tgagtacatt gggtttaaga ttttgttaaa
     2101 agttgtcata atttttcctt ttgtggattg ttgataaaaa aagaccgctt gtattgctac
     2161 aagcggcgat gaatgtgtaa tcagaatttt agttcgcctc tattaaatga aggcgtttaa
     2221 tgtttaatag cctgttatat ctacaaccag agcattaaaa tacattgctt ttgaattata
     2281 actcattccc gtcttataca aaccagaata atggtattta cagaacccaa attcaataaa
     2341 attaccactt actttggcag atctagatgt tgaatatccg ttatcgtagt taatgacaaa
     2401 atcaaagcca aaattggata agataatgcc atattgccta tttgcttgcc ctgtaaatct
     2461 aaaaacattt tttgatggat ttagatcgac atattcaata ggtcttaaaa atttgtggtt
     2521 tgatgaaaat acaacatttc ctgctgagtt ataaacctct atgccgtaac ctccgctttt
     2581 cggtacattt gtactaaaaa tgagatattc agcaaatgtt gcgttttctg tagctaatgt
     2641 ggcaatacca ttttctcgat atagcaaaca tacttgccca tcagaatatt taatgacaat
     2701 aatttcatct gacgctgcct gaatagttgc aattttatta gaaaagttag ctcgtccttt
     2761 tctttgtaag gataaacttc tgaaattttc attgatgtta aaagtagata gtccgtaact
     2821 catttaatat gctccatata caatctgaat ataatctgaa tcatcagccg gtagactaaa
     2881 aggaaaaata caaacaactt ctcctgaaat cgttttatcg ttgatcgaaa cattttctaa
     2941 atgaataaga ttgggaatat tcgttttata acctgttgct tgttttcggt gaactgaatg
     3001 taacatacta atgataaata caagttgtcc ttcatacttt tctgttaccg tgaatgaaaa
     3061 tttaccatac ttaatatttt tagttccaat gtatttaaat aatcgctcat tggtactaaa
     3121 tgtagagaca ttagcggtat caaaagtttg aatac
//
LOCUS       DANLZD010000200         3096 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.201, whole genome shotgun sequence.
ACCESSION   DANLZD010000200 DANLZD010000000
VERSION     DANLZD010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3096)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3096)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3096
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.201"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(161..1756)
                     /locus_tag="PXE26_002463"
     CDS             complement(161..1756)
                     /locus_tag="PXE26_002463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5594996.1"
                     /translation="MRLSQLSLSVLLLSASSLVAAAPVNTLINCVATPPMKLSPAITN
                     DANDFNASSQQIYNRLLAFKAGELTVEPSLAERWEISDDGLSYTFHLRKDVKFHSNKQ
                     FTPTRTLNADDVVFSFQRQMDLNHPYHKVSDGTYFYYHWMNLPKILKTVEKVDDYTVK
                     ITLQQPNAPFLTTLAMDFLSIYSKEYADKLLAEGKPELLDQAPIGTGPFVFQAYQTDQ
                     AVRYVANPDYFQGKAKFEKLIFSITPDAGTRYAKLKAGECDVIDFPNISDIAQMKQDP
                     KVNLLQRDGLNLAYIGLNSTKPALNNAKVRQALHYATDKKAIVEAVYQGGGTVASNPF
                     PDSVLGYNPNLPQYEFNLEKAKALLTEAGFADGFETEIWVQPVVRPSNPNPRRTAEII
                     QADWAKIGVKAKLVTHEWADFNKRTREGEFSTGTYGWTSRNGDPDNFLFPLLSKSNIP
                     GTNYGRWTDEKFEQLLAQAVQTQNRDERAKLYQQAVEIANEQTPFIPLAHAINYVPLS
                     KRVQGFVQNPFGYTPFYGVSLSE"
     gene            1905..2345
                     /gene="mioC"
                     /locus_tag="PXE26_002464"
     CDS             1905..2345
                     /gene="mioC"
                     /locus_tag="PXE26_002464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein MioC"
                     /protein_id="HDL5594997.1"
                     /translation="MTSICIITGSTLGGAEYVADHINEVLSEQGFEVELFNQATLADI
                     EGKTNLIIVTSTHGAGELPENIQQLFDDLANSSADFSSMKFGVIGLGSSDYDTFCNAV
                     NIVEEALKAKGASQVCESLRIDVMNNFDHDGSAEEWLPSFVEQL"
     gene            2357..2524
                     /locus_tag="PXE26_002465"
     CDS             2357..2524
                     /locus_tag="PXE26_002465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HDL5594998.1"
                     /translation="MNKISANKAKWIKIAIILIYMFSPVDILPEAILGPFGLVDDAAA
                     LMLLIKTILEK"
     gene            complement(2613..3086)
                     /gene="asnC"
                     /locus_tag="PXE26_002466"
     CDS             complement(2613..3086)
                     /gene="asnC"
                     /locus_tag="PXE26_002466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator AsnC"
                     /protein_id="HDL5594999.1"
                     /translation="MYSKNTTKSEIDKLDQKILRWLIKDARTPYAEMAKVFGVSAATI
                     HVRVEKMRQAGIIESTKIVVDERKVGYDVCCFIGIILKSAKDYDKVIAKLSEFNEVVE
                     AYYTTGNYSIFIKVMTHTIEELHSVLAGKIQSIDEIQSTETLISLQNPISRDILP"
BASE COUNT          916 a          644 c          605 g          931 t
ORIGIN      
        1 tttcagttta ttttgcataa cttttgtgat tacggctatg caaaatgatt tgcaaaacta
       61 tgcaaaataa atcgaccgct tacaattcta aaagaaaagc agtctattct ctaccacatt
      121 ttgcaaaaaa gtggcaaaaa tagaccgctt gtatggcata tcactccgat aaactcaccc
      181 cataaaatgg cgtgtagcca aacggatttt gcacaaaacc ttgcacccgt ttgctgagtg
      241 gtacataatt gatagcgtga gccagcggaa taaatggcgt ttgttcgttg gcaatttcca
      301 ccgcttgttg atagagcttc gcccgctcgt cacggttttg ggtttgtaca gcttgagcta
      361 ataactgctc aaatttctca tccgtccaac gcccataatt tgttcccgga atattagatt
      421 tgcttaataa agggaagagg aaattatcag gatcaccatt acggcttgtc caaccataag
      481 tgccggtaga gaactcgcct tcacgggtgc gtttgttaaa atccgcccat tcgtgggtca
      541 ctaatttcgc tttcaccccg attttcgccc aatccgcctg aataatttca gccgttcgac
      601 gtgggtttgg gttagaaggg cgcactaccg gttgtaccca aatttccgtt tcaaatccat
      661 cggcaaagcc ggcttctgtt aatagggctt tggctttttc aaggttaaat tcatattgcg
      721 gtaaatttgg attatagccc aacaccgaat cagggaacgg attacttgcc accgtgccac
      781 cgccttgata aacagcctcg acaatcgctt tcttatcggt tgcataatgc aaggcttggc
      841 gaactttggc gttatttaat gccggtttgg tgctgtttaa gccgatataa gctaaattca
      901 gcccgtctct ctgtaacaaa ttcaccttcg gatcttgttt catttgggca atatcggaaa
      961 tattcgggaa atcaatcaca tcgcattcac ccgctttcag tttggcataa cgagtgcccg
     1021 catcaggggt aatactaaaa atcagtttct caaattttgc tttaccttgg aaataatccg
     1081 ggttcgcaac ataacgcacc gcttgatcgg tttgataggc ttggaacaca aaaggccctg
     1141 tgccgatcgg ggcttgatcc aataactccg gcttgccttc cgccagcaat ttatccgcat
     1201 attcttttga ataaatcgac aagaaatcca tcgctaaggt tgtcagaaaa ggagcattag
     1261 gttgctgtaa ggtgatttta acagtgtaat cgtccacttt ttccactgtt tttaaaatct
     1321 tcggcaaatt catccaatgg taatagaaat aagtaccgtc agagacctta tggtaagggt
     1381 ggtttaaatc catctggcgt tggaacgaga acactacatc atccgcattc agcgttcgag
     1441 ttggcgtaaa ttgtttattg gaatgaaatt tcacgtcttt acgtaaatgg aatgtgtaac
     1501 ttaagccatc gtcactgatt tcccaacgtt ccgccaaact cggctcaacc gttagttcac
     1561 cggctttaaa cgctaataag cgattataaa tttgttgtga actggcgttg aaatcattgg
     1621 catcattagt aattgcagga ctaagtttca tcggtggagt tgccacgcaa ttaatcaacg
     1681 tatttaccgg agctgctgcc accaaactgc tggcacttaa gagtaaaaca gaaagagata
     1741 attgagaaag acgcataaag actccttaac attttctact aacttactcg gcattaacgt
     1801 attttcaaaa taactaaagg ttataattta taatcagaat aatcagttgc aaaccaatga
     1861 ttcttggcta gaatattggc agttttttaa acgagagatt tactatgaca tcaatttgta
     1921 tcatcaccgg cagcacctta ggcggtgcgg aatatgttgc cgatcacatt aatgaggtat
     1981 taagcgaaca aggttttgaa gtggaactgt ttaaccaagc cacccttgcc gatattgagg
     2041 gcaaaaccaa tctgattatc gttacctcta cccacggagc cggcgagtta cccgaaaata
     2101 tccaacagct atttgacgat ttagcaaata gctcggctga tttcagcagt atgaaatttg
     2161 gtgtaatcgg tttaggtagc tccgactatg acaccttctg caatgcagta aatattgttg
     2221 aagaagctct caaagcgaaa ggggcaagcc aagtttgcga atcactgaga attgatgtaa
     2281 tgaataattt cgaccacgat ggcagtgctg aagaatggtt accatcattt gttgaacaat
     2341 tataacttaa gtatcaatga acaaaatcag tgcaaataag gcaaagtgga ttaaaatcgc
     2401 tattatctta atctatatgt tcagccctgt agatattcta cccgaagcga ttttaggccc
     2461 attcggtttg gttgatgatg ccgccgcatt aatgctattg attaagacta ttttggaaaa
     2521 ataggcatag tagacaaaat agttgcaaaa aaccaaaaca aaacgaccgc ttgtaaccca
     2581 atacaagtgg tcttatcttt tacttaattc ttttaaggga gaatatctct tgaaatagga
     2641 ttttgaagtg aaataagcgt ttctgttgac tgaatttcat caatagactg aatttttcct
     2701 gctaataccg aatgcaactc ttcgatggta tgggtcatta ctttaataaa aatagaataa
     2761 ttaccagtgg tatagtacgc ctcaacaact tcattaaatt cactaagttt agcaattact
     2821 ttatcataat ctttggctga ttttaaaata atgccaataa agcaacacac gtcataccca
     2881 accttacgct cgtccactac gattttggta gattcaataa tgccggcttg gcgcattttt
     2941 tcaacacgga catggatagt tgcggcactc acaccaaaaa cttttgccat ttccgcataa
     3001 ggcgtgcgag catctttaat tagccaacgt aaaatttttt gatccagctt atcaatttcc
     3061 gatttagtcg tgtttttact gtacattttt tctcct
//
LOCUS       DANLZD010000201         3089 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.202, whole genome shotgun sequence.
ACCESSION   DANLZD010000201 DANLZD010000000
VERSION     DANLZD010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3089
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.202"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..284)
                     /gene="ybgE"
                     /locus_tag="PXE26_002467"
     CDS             complement(<1..284)
                     /gene="ybgE"
                     /locus_tag="PXE26_002467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyd operon protein YbgE"
                     /protein_id="HDL5595000.1"
                     /translation="MIHKLYNLTAKGLLKALSFILAAVLFATIWVNSTAFALSFGGKT
                     PYLAMLVFYGMAILWVHGIGFEIRAAIWKVIFLPLLGYLIVIPALWILLV"
     gene            complement(284..382)
                     /locus_tag="PXE26_002468"
     CDS             complement(284..382)
                     /locus_tag="PXE26_002468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CydX/CbdX family cytochrome bd oxidase small
                     subunit"
                     /protein_id="HDL5595001.1"
                     /translation="MFYVTWVLGVLLAIFFATVITISIEKTGKFDE"
     gene            complement(397..1530)
                     /gene="cydB"
                     /locus_tag="PXE26_002469"
     CDS             complement(397..1530)
                     /gene="cydB"
                     /locus_tag="PXE26_002469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HDL5595002.1"
                     /translation="MIDYEILRFIWWILIAVLLIGFAITDGFDMGVLNLLPIIGKSNV
                     ERRIMINTIAPHWDGNQVWLLTAGGAIFAAWPTVYATSFSGFYIAMVLVLAALFFRPV
                     GFEYRAKIDNPKWRSAWDWGLFIGGFVPSLVFGVAFGNLLQGVPFEFNNINQSQYTGS
                     FFGLLNPFALVCGIISLMMLTTQGATWLQMKTTDELHNNSRKVAQVTASIVLVAFILA
                     GVWLYFKDGFVITSELDHNAQSLLTNKTVAVQAGAWFRNYAEMPVLWVVPALVVVGAL
                     LTIIASKANRSGLAFFSSSLMIVGVILTAAVSMFPFIMPSITHPEMSLTVWDATASHT
                     TLTVMLFVAGIFVPLVLAYTIWSYIKMYGRLDASYLEENKAAY"
     gene            complement(1543..>3089)
                     /locus_tag="PXE26_002470"
     CDS             complement(1543..>3089)
                     /locus_tag="PXE26_002470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HDL5595003.1"
                     /translation="DVVELSRLQFALTALYHFLFVPLTLGLSFVLVVMETLYVTTGKE
                     VYKDMTKFWGKLFGINFALGVTTGITMEFQFGMNWSYYSHYVGDIFGAPLAIEGLMAF
                     FLESTFVGLFFFGWERLSKAKHLLATYCVAFGSNFSALWILVANGWMQNPIASEFNFE
                     TMRMELSSFSELVLNPVTQSKFLHTVTAGYVCGAIFVLGISSYYILKGRDLGFAKRSF
                     SVGASFGLIAIISVLIMGDESGYEIGKAQPTKLAAMEGEFETQPAPAAWNAFVIPNTA
                     EMKNEFSIHIPYAAGIIATRSLDKEIKGLKDIRVINEQRVRTGMVAYGLLEKLRSGNY
                     TEADKEAFKAVQKDLGFGLLLKQYTPNVVDATEEQIQKAADNTIPNVGPTFWAFRVMM
                     LSGFLMLILITTAFIQNMRGKVESSRFLLRGLLFGLPLPWIAIESGWFLAEYGRQPWA
                     IYEMLPVGVSNSALTTGDLWFTIGLLCGLYTLFLVVEMYLMFKYGRLGPSALKTGRYY
                     FEQSTK"
BASE COUNT         1100 a          639 c          504 g          846 t
ORIGIN      
        1 ttaacaagta aaatccataa tgccggaata acaataaggt aacctagaag tggtaaaaaa
       61 atcactttcc aaatagcagc tcggatttca aatccaattc catgtaccca taaaatagcc
      121 ataccataaa ataccaacat tgctaaatac ggcgtttttc caccaaaaga aagagcgaaa
      181 gcggtcgaat ttacccaaat agttgcaaat aatacagccg ctaaaataaa agaaagggct
      241 tttaacaagc cctttgctgt taagttatag agtttatgaa tcattactcg tcaaacttac
      301 ctgttttttc aatgctgatc gtgatgactg ttgcaaagaa gattgcaagc aatacaccta
      361 agacccaagt tacataaaac atattgtgtc tccttattag taagctgctt tattttcttc
      421 taaataacta gcatctaaac gaccatacat tttgatatat gaccaaatag tatatgctaa
      481 tactaacggt acaaagatac cagcaacaaa taacattaca gttaatgttg tgtggctagc
      541 agtagcgtcc caaaccgtta agctcatttc tggatgagta attgacggca taatgaatgg
      601 gaacattgat actgcagcag ttaaaatcac cccaacaatc atcaatgatg atgagaagaa
      661 tgctaaacct gaacgatttg cttttgaggc aataatagtc agtaatgcac ctactacaac
      721 taatgcagga acaacccata atacaggcat ttcagcataa tttctaaacc atgcaccagc
      781 ttgaaccgct acagttttat tcgtcaatag agattgtgca ttatgatcta actcgcttgt
      841 gatcacaaaa ccatctttaa aatataacca tacacctgca agaataaatg ccactaatac
      901 aatagaagct gtcacttgtg ccacttttct tgagttgtta tgtagctcat cagtagtttt
      961 catttgtaac caagttgcac cctgtgtggt taacatcatt aagctgataa taccgcacac
     1021 taatgcaaat ggatttaata aaccaaagaa tgaacccgta tattgtgatt ggttaatatt
     1081 attaaattca aatggtacac cttgtaataa gttaccgaat gcaacaccga atactaatga
     1141 tggaacgaaa ccaccaataa ataatcccca atcccaagca ctacgccatt tcggattatc
     1201 aatttttgca cgatactcaa aacctacagg gcggaaaaat aatgctgcaa gcacaagcac
     1261 cattgcaata tagaaacccg agaacgaagt tgcatagact gttggccatg cagcgaagat
     1321 cgcaccacca gcggtcaata accatacttg gttaccatcc cagtgagggg caattgtgtt
     1381 gatcataata cgacgttcaa cattactttt accaatgata ggtaaaaggt ttaatacgcc
     1441 catatcaaaa ccatcagtaa ttgcaaagcc aattaacaat accgcaatta agatccacca
     1501 aataaagcgg agaatttcat aatcgatcat ttctaactcc tattatttag ttgattgttc
     1561 aaaataataa cggcctgttt ttaatgcact agggccaaga cgaccatatt tgaacattaa
     1621 atacatttct acaactaaga atagtgtata taaaccacac aataagccga ttgtaaacca
     1681 taaatcacct gttgttaatg cagagtttga cacaccgaca ggtaacattt catagatagc
     1741 ccaaggctga cggccatatt cggcaaggaa ccaaccagat tcaatcgcaa tccaaggtaa
     1801 cggaagaccg aataacaagc ctcttaataa gaaacggcta ctttctactt taccacgcat
     1861 attttgaata aatgctgtcg taatcaagat aagcatcaag aagccagata acatcattac
     1921 acggaatgcc cagaatgtag ggcctacatt tggaattgta ttatctgctg ctttttgaat
     1981 ttgttcttca gtcgcatcaa ccacattagg tgtatattgt tttaacaata acccaaagcc
     2041 taaatctttt tgtacagctt taaatgcttc tttatccgcc tctgtataat tgccagaacg
     2101 taatttttct aatagtccgt aggctaccat accggtacga acacgttgtt cattaattac
     2161 acgaatatct tttaggcctt taatttcttt atctaaagaa cgggttgcaa taataccagc
     2221 tgcataagga atatgaattg agaattcatt tttcatttcc gcagtatttg gaatcacaaa
     2281 agcattccaa gcagctggag caggctgagt ttcgaattca ccttccattg cagctaattt
     2341 agtcggctga gctttaccga tttcataacc agattcatca cccataatca gtacagagat
     2401 gatcgcaatt aaaccaaaac ttgcacctac tgagaatgaa cgttttgcaa agcctaagtc
     2461 acgacctttt aagatatagt atgaactaat acctaataca aaaatagcac cacaaacata
     2521 gcctgcggtt acagtatgta agaatttaga ttgtgtaact gggtttaata caagttcaga
     2581 gaaacttgaa agctccattc gcatggtttc aaagttgaat tcagaagcaa tcgggttttg
     2641 catccaacca ttagcaacta aaatccatag tgcagagaag ttagaaccaa acgcaacaca
     2701 gtaagttgct aataaatgtt tcgctttcga taaacgttcc cagccaaaga agaacaagcc
     2761 cacaaaggta gattctaaga agaacgccat taaaccttca atcgctaatg gagcgccaaa
     2821 aatatcacct acataatgag aataatatga ccagttcata ccaaactgga attccattgt
     2881 aataccagtt gttaccccta gggcaaagtt aataccaaat aatttacccc agaatttagt
     2941 catatcttta tatacttctt tacccgtagt tacatacagg gtttccatca ccacaaggac
     3001 gaaagaaaga cctaatgtaa gcggtacgaa taagaagtga tagagtgcag ttagagcaaa
     3061 ctgcaaacgt gagagttcaa ctacatcta
//
LOCUS       DANLZD010000202         3069 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.203, whole genome shotgun sequence.
ACCESSION   DANLZD010000202 DANLZD010000000
VERSION     DANLZD010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3069)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3069)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3069
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.203"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..573
                     /locus_tag="PXE26_002471"
     CDS             <1..573
                     /locus_tag="PXE26_002471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL5595004.1"
                     /translation="LNELKTSIVWQGRTYDPYPIEATGFERNSSGPSNRPTLTLSNLF
                     GLVTGIANQFDECIGAIVRRHQVYAQYLDAVNFAGGNAKADPNQEIISHFVIEQLSSL
                     TRETATFTLALPIETDNAKIPSRIIMADTCTWIYRSAECGYTGKQYFDEKDKATSDPK
                     ADKCSHCLNGCELRGNQRNFGGFVSVNKLG"
     gene            577..1308
                     /locus_tag="PXE26_002472"
     CDS             577..1308
                     /locus_tag="PXE26_002472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL5595005.1"
                     /translation="MELEQQIIDYALQHEPHEMCGFVVFDGNKNRFIPCENQAEDKAN
                     YFEISDLDYIKAEEKGELVAVVHSHPEPNGKPILSVLDRKMQVQTGLDWWLVHNRQIH
                     KFRNVPHLIGREFKHGTMDCYTLYRDAYMLAGYEMDEFERQDDWWHTGQNLYLDNIQG
                     QGFERVETPQIGDVILMQVGADVPNHAAIYIGDQMVVHHSPNRLSKRDLYDGYWLRHT
                     HSIWRHKLADKLDFDGILNDIAVNN"
     gene            1577..2206
                     /locus_tag="PXE26_002473"
     CDS             1577..2206
                     /locus_tag="PXE26_002473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL5595006.1"
                     /translation="MITVKFYGHLKTFGTDFKILVKDIAEAIRALCSQLKGLREALRD
                     GVYKVRIGKQYLDPSALEKGLFYCLKKGQTIHFTPVVKGAKSGGIFQAVLGVALIGAA
                     FALGPIGLGLVGSATAMTVGAMGASMLLGGVSQMLTKMPKAPTMGNETEKESSTAFSN
                     LNNLVAQGKPVPLAYGLIRTGSLVISQGVETITIKENQPASNKKTGFRK"
     gene            2216..>3069
                     /locus_tag="PXE26_002474"
     CDS             2216..>3069
                     /locus_tag="PXE26_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HDL5595007.1"
                     /translation="MRIYGAKGGGGSSHTPIEAPETGRSKQIVNIVELLCEGEIEGLV
                     DGFKSIYLDGTQIQNDDGTYNFNNVSGQLNVGTQDQDVLDGYDSSQNEVNVGVEIKKK
                     NGAIVRTVTDERINRLRLTLGVRSLFHQNNQGDTNTTNVDLKITIGTRQYSHSFNGKY
                     SSQYLESVVFDNLPPVPFNISVERLTEDSNSQRLQNGTIWSSYTEIIDTEFTYPNSAV
                     AGISFDSEYFNNIPTRNYLIKAKKVKVPSNYDPVKRTYTGFWDGTFKVAWTNNPAWEI
                     YDLAPILS"
BASE COUNT          937 a          629 c          701 g          802 t
ORIGIN      
        1 ctaaatgaac tcaaaacaag tattgtctgg caaggtcgaa cttacgaccc ttaccccatc
       61 gaggcaacag gatttgagcg taacagcagc ggcccaagca atcgccctac tcttacgcta
      121 tcaaatctgt ttggcttagt tacgggtatt gctaatcagt ttgacgaatg tatcggtgcg
      181 attgttcgcc gtcatcaggt ttacgcccaa tatttagatg cagtaaactt tgctggaggt
      241 aatgccaaag ccgatcctaa tcaggaaatc atcagccatt ttgtgattga gcaactttca
      301 agcctcacac gagagactgc tacttttacg cttgcgttgc cgattgaaac cgataatgcc
      361 aaaatcccca gcagaattat tatggcggac acctgcactt ggatttaccg ctcggcggaa
      421 tgtggctaca ccggcaagca gtattttgat gaaaaagaca aggcaacatc agacccaaaa
      481 gccgataaat gcagccattg cctgaacggt tgtgaattgc gaggcaatca gcgtaatttt
      541 ggtggatttg tatcggtgaa taaattgggg taatgaatgg aattggaaca acaaataatc
      601 gactacgccc tccaacacga accgcacgaa atgtgcggct ttgttgtttt tgacggcaat
      661 aaaaatcgat ttatcccttg cgaaaaccaa gcggaagaca aagccaatta ctttgaaata
      721 tccgatcttg attacatcaa agcagaagaa aaaggcgaac tggtagcggt ggtacattca
      781 catcccgagc caaacggcaa gcctatatta tctgtgcttg atcgcaaaat gcaggtacag
      841 accggtttag attggtggct agtgcataat cggcaaatcc ataaattccg caatgtacca
      901 catttaatcg ggcgtgagtt taaacacggc acaatggatt gttacacgct ctaccgtgat
      961 gcctatatgc ttgccggtta cgagatggac gagttcgagc gacaagatga ctggtggcat
     1021 accgggcaaa atctttattt ggataatatc caagggcaag gttttgagcg agtggaaacc
     1081 ccacaaatcg gcgatgtgat tttaatgcaa gtaggtgctg atgtgccgaa ccacgctgcc
     1141 atttacattg gcgatcagat ggtagtccat catagcccca accgtttatc taaacgtgat
     1201 ttatacgacg gctactggtt acgtcatacc cacagcattt ggcggcataa actggcggat
     1261 aagttagatt ttgacggcat attgaatgat attgctgtaa ataactaaca aaaaatgacc
     1321 gcttgtaaca aaaacaaacc ccgaagcgtt tgcagcactt cggggttttt catatccact
     1381 tacctaacta agaggacata aattgaatga atgataaacg atttacattc aaatttctag
     1441 gagttcttat ggaagcaata aatattaccc caaaagaaat cagaaaaaca atgtggacag
     1501 ccgcaataat tctctttttg tttgcgttca tctggaaagc ccctgaattt atcactgcta
     1561 ttcgttggtg gtaactatga ttacagttaa attttacgga caccttaaaa cattcggcac
     1621 agattttaaa attttagtta aagacatcgc tgaggcaatt cgtgctctgt gttcacagct
     1681 taaaggattg cgtgaagcgt tgcgagacgg tgtttataaa gtccgtatcg gtaagcagta
     1741 tttagaccca tcagcccttg aaaaagggct tttttattgc ctgaagaaag ggcaaaccat
     1801 tcattttacc cctgttgtca aaggagcgaa aagcggtggt atttttcaag cggtgttagg
     1861 tgtggcgtta attggggctg catttgcgtt aggtcctatc ggcttaggat tggttggctc
     1921 tgctacagca atgacagttg gagcaatggg ggcatcaatg ttactaggag gagtttccca
     1981 aatgctcacc aaaatgccaa aagcccccac aatgggtaat gaaacagaaa aagaaagctc
     2041 aacggctttt tcaaatttaa ataacttggt ggctcaaggc aaacctgtgc cgttggctta
     2101 tggtttgatt cgtaccggct cgctggtgat atcgcaggga gttgagacga tcaccattaa
     2161 agaaaaccaa ccggcaagca acaagaaaac cggctttaga aaataaggga taattatgcg
     2221 tatttacgga gcaaaaggtg gtggcggcag tagccatacc ccgattgaag caccggaaac
     2281 cggtcgctca aaacagattg tgaatattgt ggaattgctg tgcgagggcg aaattgaagg
     2341 cttggttgat ggctttaaat cgatttacct agacggcacg cagatccaaa acgatgacgg
     2401 cacctataat tttaataatg tgagcggtca gctaaatgtc ggtacgcaag atcaagatgt
     2461 gttggacggt tacgatagct cacagaatga agtgaatgtg ggtgttgaga ttaagaaaaa
     2521 gaatggggct attgtccgca ccgtaactga tgaacgaatt aaccgcttgc gtttaacgtt
     2581 gggagtaagg tcattattcc accaaaataa tcaaggcgat accaatacca ccaatgttga
     2641 tttaaaaatc acgattggca cacggcaata ttcgcatagc tttaacggca aatacagctc
     2701 gcaatacctt gaatctgtgg tgtttgataa cctgccgcct gtgccattta atatctcagt
     2761 tgagcgtcta accgaggata gcaattcgca acgcttacaa aacggtacaa tttggagtag
     2821 ttacaccgaa attatcgata ccgagtttac ctaccctaat tcagcggttg ccggtatcag
     2881 ttttgattcg gagtatttta ataatatccc gacccgaaac tacctaatta aagcgaaaaa
     2941 agtcaaagtg ccaagcaatt atgatccagt taaacgcact tacaccggct tttgggacgg
     3001 cacatttaaa gttgcgtgga cgaacaaccc tgcttgggaa atttacgatt tagctccgat
     3061 tttaagcaa
//
LOCUS       DANLZD010000203         3025 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.204, whole genome shotgun sequence.
ACCESSION   DANLZD010000203 DANLZD010000000
VERSION     DANLZD010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3025)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3025)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3025
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.204"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            2137..>3025
                     /locus_tag="PXE26_002475"
     CDS             2137..>3025
                     /locus_tag="PXE26_002475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5595008.1"
                     /translation="MNADKLTDITSRVANAESTITNFQSTKANKSEVASIAQQNLQSI
                     WRTDAQSAVDALKIGGANLLVDSEYLTTARWGGSSRVASSQYGDRRLTQVFVTQAGTG
                     HFGVTQGTQKATTRIRQGETYTLSLNAQGTAGFTRTGLNYVYLIREDGGNFRLPTLPL
                     TASLSQRPKVTFTAPWTSNQVRLLIGANGIFEATDWFAFHSVKLEMGNVATGWTPTAK
                     DIDDKVSAVQSNLTAYQAAQAKADQAKATQISGLTTRMGAAESNLTRTERAVTELNQT
                     TVTTLRDLTARTKTTEGSLS"
BASE COUNT          977 a          672 c          677 g          699 t
ORIGIN      
        1 ctggatagta caccaaccgg cttagaaacc tacggtgttt ggtcgttatc gactaaacaa
       61 atcagctctg gattatatcg ctcaatctcg attgtcgaaa atgcggacgg cacaaacact
      121 atcacagcgt tacaacacga accgcagaaa gaggcaattg ttgataactc cgctcacttt
      181 gtggaaacgg ctagaacact ctacaaagct ccacaaatta acgcagtgga agtctcgacc
      241 ggttatgacg gtaagctcta cattaccggt gatattagct ccggtgatgg caagctaacc
      301 tatgatatta aaattaccaa agatggcaat ttatatcaat acaaaaaagg cttaagcgat
      361 ccgaacattg aactaagtga tttacctaac ggcgattata ccgtcattat ttacggcaaa
      421 aacgccaaag ggcaaatcgt caccgaaaaa acacaaacct ttactattga tcgacctcca
      481 gctccgaccg gtgtagtagt aacaggtgga ttagggcaaa ttaccctcga atgggattgg
      541 gtaaatgagg ttacgcaaac cgagattttc gcggccgaaa ccgataattt cgcccttgca
      601 aaaaaaatcg caaaagtgac cgctagaacc tacgctcaca cactaaaagg taacaaggtt
      661 gtacgctatt attggctacg tcataccaga ggcattaatg tcggaccgtt ttatcaacaa
      721 cagggggtaa gaggacaaac agcggttgat ttggatgctc gattaaccga attaaacact
      781 cagttatcac gcaatattgt taatgaggtt tttgatgttg ctgcaccggc aagaggttta
      841 gaattagtga aaacagtcgc taatttgacc gacaaaggta ctaaactggc gtcatctcaa
      901 gtttacaatc aggctgacgg caagctctat acttggaacg gtacagcata ctcagctaca
      961 gtggctgcgg aagatgttac cggcaaatta tcaaaatcta aaattgatac gtcccttatt
     1021 tcgcaattaa caggtgcaga taacaccgca aatttggcaa gaagattagc ggaaacagct
     1081 caaagcaaca ttaaccaaga gattactaac cgacaagatg ccgttactgc cgaagcaaat
     1141 aaccgtacta aagccattca agccgaaagt gcgaatttaa cgaaaaaaat tcaagctgaa
     1201 gcaaccgctc gtggggctgc tgttacacag ttacaaaatg ttgatgctca acaagcacag
     1261 ttgatttctg ctgtcacagc aaaagctgat aatgctcttt caggcttgga agaagaaaaa
     1321 acagcacgag caaacgccga taaagcggag tctcaagcac gtgaagcatt aacagcaaga
     1381 atgggagcag ctgaaagcaa tatcgtaact attcaacgta cggtagcaaa taatgcccaa
     1441 agcattagtg aagtcagtca gaatttaaat gctaagattg ataatattaa tatcggcggt
     1501 cggaatttat taagagacag cgagttcaat gcgtacaata aatggggtag cccacaaatt
     1561 gaatttgctg aaaatgcaaa tcgccgaact atcaaagtaa cctcaacagg tactaacggt
     1621 cctgttggta ttgtttcatc taatcgccat tccacatctt atttccaaca aggagaaact
     1681 tatacactct cattatttgc tcgaggaagt aaggcactag actatctcta tctaatgcgt
     1741 caagatggga ataacgttag attaccagtg attaacgttg cctctgaaac tgagtttaat
     1801 cattacaaac tcacgttcaa ggctcctttt accacgcaac aaggttatgt cttaatcggt
     1861 tttcggcaaa ccagcacaga gcagtttgtt gagtttcaca gcgtcaaact tgaaaaaggc
     1921 aacgtagcca cagactggac accagcaccg gaggatgtgg agagtgcggt tagtgctgtt
     1981 tcggctgatt taacgagtta taaacaaact caagcggcta ccgattcagc acaagcacag
     2041 caacttaatc agttatctgt gaacttgacc aaagcagaga ctaatttcaa cgccaaaatc
     2101 acggaagaaa aaaaagctcg tgttgatgca gataaagtga atgcagataa actcacagac
     2161 ataacaagcc gtgttgcaaa tgcggaatca actattacca atttccaatc aaccaaagcg
     2221 aataaaagtg aggtggcaag tattgcccag cagaacttac agagcatttg gcgcaccgat
     2281 gcgcaaagtg cggtggatgc cttgaaaatc ggtggtgcaa atctactggt tgatagtgag
     2341 tatttgacga cagcccgttg gggcggtagc tcacgagtgg caagctcgca atatggtgat
     2401 cgtcgcttga ctcaagtgtt tgtgacccaa gcaggcacag ggcattttgg tgtgactcaa
     2461 ggcacacaaa aagccactac gcgtattcgt cagggtgaaa cctatacctt gtcactaaat
     2521 gcgcagggga cggcaggttt tacccgcaca gggttaaact atgtgtacct tatccgcgaa
     2581 gatggtggca attttagatt gccaactttg ccgcttactg catcattgtc ccaacgccct
     2641 aaagtgacat ttactgcgcc gtggacgagc aatcaagttc ggttactgat tggcgcaaat
     2701 ggcatatttg aggcgacaga ctggttcgca tttcacagcg ttaagctcga aatgggtaat
     2761 gttgccacag gctggacacc aaccgccaag gatattgacg acaaagtatc agcggttcag
     2821 tccaacctca ccgcttatca ggcggcacaa gctaaagcag atcaagccaa agctacgcag
     2881 atttcggggc tcacaacccg aatgggggca gcggaaagta acctcactcg caccgaacgg
     2941 gcagtgacgg aacttaatca gacaacggtg acgacactgc gtgatctaac cgcgcgcacc
     3001 aaaacaacgg aaggttcgct ctctc
//
LOCUS       DANLZD010000204         3014 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.205, whole genome shotgun sequence.
ACCESSION   DANLZD010000204 DANLZD010000000
VERSION     DANLZD010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3014)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3014)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3014
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.205"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            184..1302
                     /locus_tag="PXE26_002476"
     CDS             184..1302
                     /locus_tag="PXE26_002476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HDL5595009.1"
                     /translation="MKKTLVALAVTAFAASASATTVYDAEGSKVDFDGSLRIVLDRTN
                     SKELDNHNVVKTKKDAHTGIRNTGSRFGVRVKHDLAQDFYALGRVEFRFNKNTSDDGF
                     GDLYTKRAYVGLGSKQYGELTFGRQVTIADDLSQSVDYNYGINPKGDYIQTDGNQVIR
                     YNYRGVENLHVSANYNFAQDRKDGKVLANKLQNAYGIGALYTVDNWDLRAAYGHTNYK
                     TATDSTKHRKDGVLGSVGYKFGDLKLSVDTGYSREKGLAVTDDNGVTTFYNGVKSNAF
                     YVSPNFEYQVVPASKVYGNYLYERVKSKSNGSTYAAGKEKTHGFLLGVDYQFHKQVVA
                     FVEGSYTRTKDYDKVTNGYEYSGKSTNKAIGVGMRVYW"
     gene            complement(1455..2819)
                     /gene="glmU"
                     /locus_tag="PXE26_002477"
     CDS             complement(1455..2819)
                     /gene="glmU"
                     /locus_tag="PXE26_002477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HDL5595010.1"
                     /translation="MTQLSVVILAAGKGTRMYSDLPKVLHPVAGKPMVKHVIDTAKQL
                     DAQQIHLIYGHGADLLKARLSEEPVNWVFQAEQLGTGHAMQQAAPFFADDENIVMLYG
                     DAPLITKATLERLIAAKPENGIALLTVELENPTGYGRIIRENGSVVAIVEQKDANEAQ
                     LKVKEVNTGVMVASGASFKKWLKNLNNNNAQGEYYITDVIAMANQEGFKVQAVQATEF
                     MEVEGANNRLQLAALERFYQKREAEKLLLAGVTIIDPSRFDLRGTVTHGKDVQIDVNV
                     ILEGEIKLGNNVKIGAGCVLKNCEIGDNVEIKPYSVIEDSIVGAKSAIGPFSRLRPGA
                     ELAEETHIGNFVEIKKATIGKGSKVNHLTYVGDAEIGKECNIGAGVITCNYDGANKFK
                     TIIGDNVFVGSDSQLIAPVTIASGSTIGAGATVTKDIAENELVISRVPQRHIQGWQRP
                     TKKK"
BASE COUNT          867 a          542 c          589 g         1016 t
ORIGIN      
        1 aaagaaaaaa tgccgtcttt gttttggggt ttgaactatt gacattgagt tttctttttg
       61 caattattct ggcgaaaaca atgttaggcg ttttgctgat acattgtatc ttggataatt
      121 actcttacac cttaatgagg gtaattactt atcatataac atataaaatc taaggtgaaa
      181 attatgaaaa aaacattagt tgcattagca gtaaccgcgt tcgcagcgtc agcatcagca
      241 accaccgttt acgatgcaga aggttcaaaa gtagattttg atggttcttt acgtattgtt
      301 cttgatagaa caaattctaa agagctagac aatcataatg ttgttaaaac taaaaaagat
      361 gcacacacag gaatccgtaa cactggttca cgttttggtg taagagtaaa acatgattta
      421 gctcaagatt tctatgcatt aggtcgtgtt gagttccgtt ttaacaaaaa taccagtgat
      481 gatggttttg gtgatttata tactaaacgt gcttatgttg gtttaggtag taagcaatat
      541 ggtgaattaa cttttggtcg tcaagtaacg attgctgatg atttaagtca atcagtagat
      601 tacaactacg gtattaatcc aaaaggtgat tatattcaaa ccgatggtaa ccaagttatt
      661 cgttataact accgtggtgt tgaaaactta catgtaagtg caaactataa ctttgcacaa
      721 gatcgtaaag atggtaaagt attagcaaat aaacttcaaa atgcatacgg cattggtgca
      781 ttatacactg tagataactg ggatttacgt gcagcttatg gtcatacaaa ctacaaaaca
      841 gctactgata gcactaagca ccgtaaagat ggtgtattag gttctgttgg ttataaattt
      901 ggtgacttaa aattaagtgt tgatacaggt tattctcgtg agaagggttt agctgttacg
      961 gatgataatg gtgtaactac attctataat ggtgttaaat caaacgcttt ctatgtatct
     1021 ccaaactttg aatatcaagt agtgcctgca tctaaagtat atggtaacta cttatatgag
     1081 cgtgtgaaat ctaaatcaaa tggttctaca tatgctgctg gtaaagaaaa aactcatggt
     1141 ttcttacttg gtgttgatta ccaattccat aaacaagtag ttgcttttgt tgagggttct
     1201 tatactcgta ctaaagacta tgataaagta actaatggtt atgaatactc aggcaaatca
     1261 actaacaaag ctatcggtgt tggtatgcgt gtatactggt aatcaattga ttttctaaat
     1321 tgataaaccc ctaacaatat ttattgttag gggttttgtt ttaaatatat tgttcattat
     1381 cctttttaaa gtgtatggct ttgctgttat tggcaaagcc aatttttaaa tataataact
     1441 tttgaccact ggcactattt ctttttagtc gggcgttgcc agccttgaat atggcgttgt
     1501 ggtacacggc taattaccag ttcattttcc gcaatgtctt tagtgactgt tgcaccggca
     1561 ccaatggttg aaccgctggc aatcgtgacc ggggcaatga gttggctgtc tgagccgaca
     1621 aatacgttat cgccaataat ggttttgaat ttattcgcac catcatagtt acaagtgatt
     1681 acacctgctc cgatgttaca ttctttgccg atttccgcat cgcctacata agtgagatga
     1741 tttacttttg aacctttgcc gatggtagct tttttgattt ccacaaagtt accgatatgg
     1801 gtttcttccg ctaattctgc ccccgggcgt aagcgagaga atggaccgat agcggatttt
     1861 gccccgacaa tcgaatcttc aatcacagaa taaggtttaa tttcaacatt atcgccaatt
     1921 tcgcagtttt tcagtacgca gcctgcacca atttttacat tgttaccgag tttgatttca
     1981 ccttctagaa tgacattcac atcgatctga acatcttttc cgtgggtgac agtgccacga
     2041 agatcaaaac ggcttgggtc gataatagtt acaccagcca ataacagttt ttccgcctca
     2101 cgtttttggt agaaccgttc aagtgcagca agttgcaaac ggttgtttgc cccttctact
     2161 tccataaatt cagttgcctg aaccgcttgt actttaaagc cttcttggtt tgccattgcg
     2221 atcacatcag tgatgtaata ttcaccttga gcattgttgt tatttaggtt tttcaaccat
     2281 tttttgaagc tcgcaccgct tgctaccatc acgccggtat tcacttcttt gactttaagc
     2341 tgtgcttcat tggcatcttt ttgctcaaca atcgctacca cagaaccatt ttcacgaata
     2401 attcgtccgt agcctgtcgg gttttccaat tcaacggtta gtaatgcaat accattttcc
     2461 ggtttggctg cgattaaacg ctctaaagtg gcttttgtga ttaggggggc atcaccataa
     2521 agcattacaa tgttttcatc atcagcgaaa aaaggagctg cttgttgcat tgcatgtcct
     2581 gtgcctaatt gttcggcttg gaatacccag tttacaggct cttcgcttaa acgtgctttt
     2641 aacagatcgg caccgtgtcc gtaaattaaa tgaatttgct gggcatctag ctgtttggca
     2701 gtatcaataa cgtgttttac catgggttta ccggcaactg ggtgtaacac tttgggtaaa
     2761 tctgaataca tacgagtgcc tttaccggca gctaaaataa caacgctcag ttgagtcata
     2821 tagaatcctt atttgactaa atagatgaag gcttatagta acgtgtaaat tgctataagt
     2881 gatatttttg taatatttta acctttttat aagtggattt catcgacaag caaaagaaat
     2941 ttgtctgttt gttatctttt tctattatgt cgattcttat cttgtggaaa actggtataa
     3001 ataggtagca ctta
//
LOCUS       DANLZD010000205         2955 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.206, whole genome shotgun sequence.
ACCESSION   DANLZD010000205 DANLZD010000000
VERSION     DANLZD010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2955)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2955)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2955
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.206"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            120..2159
                     /gene="malQ"
                     /locus_tag="PXE26_002478"
     CDS             120..2159
                     /gene="malQ"
                     /locus_tag="PXE26_002478"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HDL5595011.1"
                     /translation="MSNKQNTAHYFYSPNIKEYASPSAFEKIERLLNTDNDLQKNNQI
                     LPLVKVITQPNAEQQAVEISLNFTNVAKWQIVLENGEVRNGEIKAEQSVLTLPADLPL
                     GYHQLSISTENDEESCSLIVTPPKAFQPKPLEERKKLWGAFLQLYTLRSDNNWGIGDF
                     GDLKQFLANISDYGADFVGLNPIHALFPADPDAASPYSPSFRLWQNIIYIDVSAVEAF
                     QQSEQAQQWFHTKETQQQLAELRAKDFVDYSQVAQLKLKALQFAFEHFSQSSQQQSQT
                     AFDAFIEQAGEPLKIQATFDALHHWISSEFGEKGGWTNWAEEYQSYYSPKVAEFQISQ
                     ATQIRFYMWLQFVANQQLAECNRFAQSLSMPIGFYRDLAVGVTQSGAETWADKALFVQ
                     EASIGAPPDMLAPNGQSWGLSPMHPHILQSRGYQPFIDLVRANMKHCGALRIDHILGF
                     ARMWWVANGESAKEGIYVRYPLEDLLSILALESQRHQCLVIAEALGIVPEGILDSLEQ
                     KGIFAYNVFYFEKAENAFKPLENYPYQAMTTLSTHDLPTIQGYWKGYDFELGEKFDTY
                     PSKAVLRKLKEERSYDRLNIRNAVEKVIALEPNEVGVTIKFTHQLQRYVAHTHSALFG
                     TQPEDWLNMLEPVNIPGTSTEYPNWRRKLSATTEQIFANKDIQQLLKDINEIRKG"
     gene            complement(2227..>2955)
                     /locus_tag="PXE26_002479"
     CDS             complement(2227..>2955)
                     /locus_tag="PXE26_002479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HDL5595012.1"
                     /translation="GCSSFSTKLKQEFFSGWTTFEASWLIVFLAIQIGIFIYQPDTWI
                     ATIAAITGILCVVFVGKGKISNYLFGLISVSLYAYISYTFQLYGEMMLNLLVYVPVQF
                     IGFYFWRKNMTSENTVNNAGVEEVIAKALTAKQWVIVAITTIIGTFLYIELLKYLGSA
                     LAILDGATVVISIVAQILMVLRYREQWALWIIVNIMTISLWTAMYFQNGETSLPLLVM
                     YVMYLCNSIYGYYNWIKLHRKHQQ"
BASE COUNT          949 a          625 c          574 g          807 t
ORIGIN      
        1 ttaaattaaa tttttttaac atcatatcac aaagacaaac ctgttgccta ctcttcttac
       61 tcatattaat cttcacaaga tcgttatttt aacaaataca gtaaaggaaa aaagtcataa
      121 tgtcaaacaa acaaaataca gctcactatt tttactcccc aaatattaaa gagtatgcca
      181 gcccctctgc ttttgagaaa atagagcggc ttttaaatac cgataacgat ttgcaaaaaa
      241 ataatcaaat tctaccgctt gttaaagtga ttactcagcc aaatgccgag caacaagcgg
      301 tcgaaatttc gctgaatttt acaaatgtag caaagtggca aattgtgctt gaaaatggtg
      361 aggttcggaa cggtgaaatt aaggcagagc aatcagttct aaccctgcct gccgatttgc
      421 ctttaggcta tcatcagctt tctatttcaa ctgaaaatga tgaagaatct tgctcgctga
      481 ttgtaacacc gccgaaagct ttccagccta agccattgga agaaaggaaa aagctctggg
      541 gtgcattttt acagctttat actttgcgtt ccgataacaa ctggggaatt ggcgattttg
      601 gcgatctcaa acaattcctt gccaacattt ctgattatgg tgcagatttt gtgggcttaa
      661 accctattca cgccctcttt ccggcagatc ctgatgcggc aagcccttac agcccgtcct
      721 ttcgactttg gcaaaatatt atttatattg atgtttcagc agtagaagcc tttcaacaat
      781 ctgaacaggc tcaacaatgg tttcacacca aagaaactca acagcaactt gccgaattgc
      841 gagccaaaga ttttgtcgat tacagccaag tagcgcaact gaaattaaag gctctgcagt
      901 ttgcttttga gcatttttca cagtcatctc aacaacaatc gcaaacagcg ttcgatgcct
      961 ttattgagca agcaggcgag ccattaaaaa tccaagcaac gttcgatgct ttgcaccact
     1021 ggatttcatc tgaatttggc gaaaaaggcg gctggacaaa ctgggcggag gaatatcaaa
     1081 gttactattc gcctaaagta gctgaatttc aaatatcgca ggcaacgcag atacgttttt
     1141 atatgtggtt gcaatttgtg gcaaaccagc aattagcaga atgcaaccgg tttgctcaat
     1201 cactttcaat gccgattggt ttttaccgcg atttagccgt tggtgttact caaagcggag
     1261 cggaaacttg ggcggataaa gccctatttg tgcaagaggc gtcaatcggt gcaccacctg
     1321 atatgcttgc cccgaacgga cagagctggg gactttcgcc aatgcacccg catattctac
     1381 aaagccgagg ttatcagccg tttattgatt tagtgcgtgc taatatgaaa cattgtgggg
     1441 cattgcgaat cgaccatatt ctcggcttcg cccgtatgtg gtgggtggcg aacggtgaat
     1501 cggcaaaaga agggatttat gtccgttatc cgctcgaaga tttgctctct attttggcat
     1561 tagaaagcca acgtcaccaa tgtttagtga ttgcagaggc acttggcatt gtgcctgaag
     1621 gcattttgga ctctctcgag caaaagggca tttttgccta caatgttttt tattttgaaa
     1681 aggcagaaaa cgcgtttaaa ccgctggaaa attatcctta ccaagcgatg acaactctaa
     1741 gcacccacga tttaccgact attcaaggct attggaaagg ctatgatttt gagctaggcg
     1801 aaaaatttga cacttaccca agcaaagccg tattgagaaa gctgaaagaa gagcgttcgt
     1861 acgaccgctt gaatatccgt aatgcggtgg aaaaagtgat agcactcgag ccaaatgaag
     1921 tgggagtaac aataaaattt acccaccaat tacaacgcta tgtggctcac actcacagtg
     1981 cattattcgg tacacagccc gaagattggc tcaatatgtt agagccggtg aacattccgg
     2041 gaaccagcac cgaataccct aactggagaa gaaaattatc cgcaaccacc gagcagattt
     2101 ttgcaaataa agatattcaa caactgctaa aagatataaa cgaaattcgt aaaggataat
     2161 aacaagcggt catttttagg taaattttta caaaaaatga ccgcttgtaa tttgtattta
     2221 ttcgctctat tgctgatgtt ttctgtgaag tttaatccag ttgtaataac cgtaaataga
     2281 gttacataaa tacatcacat acatcaccaa cagcggcaag ctggtttcgc cgttttggaa
     2341 gtacattgcc gtccataaag aaatggtcat aatattcacg ataatccaca atgcccattg
     2401 ctcacggtag cgaagtacca tcaaaatttg tgccacaatc gaaataacca ctgttgcacc
     2461 atctaatata gctaacgcac tgcctaaata tttaagcaat tcaatataaa gaaatgtgcc
     2521 gataatggtg gtaatggcga caatcaccca ctgttttgcg gttaaagctt tagcaattac
     2581 ctcttccaca ccagcattat ttaccgtgtt ttcgctggtc atatttttac gccagaaata
     2641 gaaaccgata aactgcaccg gcacatatac aagtaaattc agcatcattt caccatataa
     2701 ctgaaaggta taagagatat aagcataaag cgaaacggaa attaagccga atagatagtt
     2761 actgattttt cctttaccga caaataccac gcataaaata cctgttattg ccgcaatagt
     2821 tgcaatccaa gtatcgggtt gataaataaa aataccgatt tgaatcgcta aaaaaacaat
     2881 caaccaactt gcctcaaaag tagtccaacc actaaaaaac tcttgtttta acttagttga
     2941 aaaagatgaa cagcc
//
LOCUS       DANLZD010000206         2853 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.207, whole genome shotgun sequence.
ACCESSION   DANLZD010000206 DANLZD010000000
VERSION     DANLZD010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2853)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2853)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2853
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.207"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            161..307
                     /locus_tag="PXE26_002480"
     CDS             161..307
                     /locus_tag="PXE26_002480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HDL5595013.1"
                     /translation="MKTEQKATEFDRYKHYAEKAAEAERKGNYAEAQDHWKVAKLSAK
                     KTAN"
     gene            374..556
                     /locus_tag="PXE26_002481"
     CDS             374..556
                     /locus_tag="PXE26_002481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595014.1"
                     /translation="MTEQEKNELNSQLNEALMQIIQAQKYLKQSDFIRSGVYLGTVQD
                     LLPKVHLKLLTANRKH"
     gene            579..1154
                     /locus_tag="PXE26_002482"
     CDS             579..1154
                     /locus_tag="PXE26_002482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5420 family protein"
                     /protein_id="HDL5595015.1"
                     /translation="MKFRFFKGDITQEPLKSIYADYQVSKEERKDKLNAILEKYPFND
                     GLISRSGWFHRIVIGIACKATNISQVLDVKGFKVGKFNDEFYLVKPDKRYEKGKELAE
                     DFKAINEIYEKHRDFSPYILKRLNMLYFVSDFSYSPTSGRSYLAVAGICENTLLVEMP
                     MPIDKNDEPFPEIAEGLVEIKESEFLAIQGK"
     gene            1225..1395
                     /locus_tag="PXE26_002483"
     CDS             1225..1395
                     /locus_tag="PXE26_002483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595016.1"
                     /translation="MEYQKIPEYRLCKKKSGEIVLQQLVICELTPATWHNPYPDSRTY
                     WVDLETIEEGTE"
     gene            1395..1949
                     /locus_tag="PXE26_002484"
     CDS             1395..1949
                     /locus_tag="PXE26_002484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595017.1"
                     /translation="MKLCKCPICHSDISFEALIEDDAGRELLNTIVNIGGNCGRAVVA
                     YLGLFKPQKNSLANSRALKIVQSLLELYPPSNVLEKALMDTVEQVRRNRRETGRCEPL
                     ANHNYLKKVYESVKPQFAVVRSEAKAVSSLEQQQRQADQKKHDAVMYVERMKQMGQLE
                     AVKNTESYQIWLKWQEEKQNATAN"
     gene            1933..2358
                     /locus_tag="PXE26_002485"
     CDS             1933..2358
                     /locus_tag="PXE26_002485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein GemA"
                     /protein_id="HDL5595018.1"
                     /translation="MQPQTRKQMIQKIHIGKNELKLDDNAYKMLLLEAVDKPSCSMMT
                     DSELMTVLQTMKAKGFVVKSKKYGKRPTASKTAPHRQGLINKIGALLYQSQKPWDYAH
                     AIAKRSFGIERVQWLTDDQLHKLVQILASYNHRHGMSVK"
     gene            2447..2794
                     /locus_tag="PXE26_002486"
     CDS             2447..2794
                     /locus_tag="PXE26_002486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595019.1"
                     /translation="MKELLLTTLCLLSLPAIAMTEKAEQETANALVSGDYQQLRNVAY
                     GMETGSFGHDHNPIAACALRRVILLVNSDKVDMTDFNNEAIACRKIEVTDNQQAWETA
                     FTIAKSISATKKK"
BASE COUNT         1002 a          469 c          636 g          746 t
ORIGIN      
        1 cgttattaaa tcatttgcat attttaaatc agttaaaaag aaagtcttag ttaaaaaacc
       61 ttttcaatgc cctttaaaaa tctcccctag cccctctttt tcaaagaggg ggacaagata
      121 gaagggcatt tataaagtgt tttaaccaca ggaggaaaaa atgaaaacag aacaaaaggc
      181 gaccgagttt gaccgctaca aacattatgc cgagaaagca gcggaagccg aacgtaaagg
      241 caattatgca gaagcccaag accattggaa agttgcaaaa ttatcagcaa aaaagaccgc
      301 taactgagac tgggcggggc aacgagcggt attttgtaaa cgtatgcata agaaaccgtt
      361 ttaggaggag atgatgaccg aacaagagaa aaacgaactt aacagccaat taaacgaggc
      421 gttaatgcag attattcagg cacaaaaata tttaaaacag agtgacttta ttcgcagtgg
      481 tgtttatctc ggcacggtgc aggatttgtt gccaaaggtg catttgaagt tattaacggc
      541 aaatcggaaa cattaaccac cccagtaagg agttaagaat gaaatttaga ttttttaaag
      601 gggatataac ccaagagcca ctaaaaagca tttatgcaga ttatcaagta tctaaagaag
      661 aacgcaagga taagctcaat gctattttag aaaaatatcc tttcaatgat ggattaatta
      721 gtaggtcagg ctggtttcat agaatagtta tagggattgc ttgtaaagca accaatatta
      781 gccaagtttt agatgttaaa gggttcaagg tcggtaaatt taatgatgag ttttacctcg
      841 tcaaacctga taaacgttac gaaaaaggga aagaacttgc agaagatttt aaagcaatta
      901 atgaaattta tgagaaacat cgtgattttt cgccctatat cttaaaacgt ttgaatatgc
      961 tttattttgt aagtgatttt agttattccc caacatcagg tagaagttat ttagccgtag
     1021 caggcatttg tgaaaacacc ttactggttg aaatgccaat gcctattgat aaaaatgatg
     1081 aaccatttcc tgagattgca gagggattgg ttgagattaa agaaagtgag tttttagcaa
     1141 tacaggggaa gtaataaaac ccatttacag cccatttaac ccctatttaa gtgggctgaa
     1201 taatgtgttt tataggagca taaaatggaa tatcaaaaaa ttcctgaata tcggttatgt
     1261 aaaaagaaat cgggagagat tgtgttacaa caattagtta tttgcgagct aactccagca
     1321 acttggcata acccataccc tgatagtcga acttattggg ttgatctcga aacaatagaa
     1381 gaaggaacag aatgatgaaa ctatgcaaat gcccgatttg ccattccgac atctcgtttg
     1441 aggcgttgat tgaagatgat gcagggcgtg agttgttaaa tacgatagtc aatatcggtg
     1501 ggaattgtgg gcgtgcggtg gtggcgtatt tagggttatt taagccacag aaaaacagcc
     1561 ttgccaatag ccgagccttg aaaattgtgc agagtttatt ggagctttac cctccctcta
     1621 atgtgttaga aaaagcctta atggatacgg tggaacaagt aagacggaat cggcgtgaaa
     1681 ctggcagatg tgagccgctg gcaaatcata attacttgaa gaaagtatat gaaagcgtga
     1741 agccacaatt tgcagtagta agaagtgaag cgaaagcagt gagtagcctt gagcaacagc
     1801 aacggcaagc agaccaaaag aaacacgatg ccgtgatgta tgtggaacga atgaagcaaa
     1861 tggggcaact ggaagccgtt aagaacaccg aaagttatca aatttggctg aaatggcagg
     1921 aggaaaagca aaatgcaacc gcaaactaga aagcagatga tacagaaaat ccatatcggc
     1981 aaaaatgagc taaaactgga tgataacgcc tataaaatgc tgttgttaga ggcggtggat
     2041 aaaccaagct gctcaatgat gaccgatagc gaattaatga ccgtactgca aacaatgaaa
     2101 gctaaagggt ttgtggtgaa gtcgaaaaaa tacggtaaac gcccaacagc aagtaaaacc
     2161 gcccctcacc ggcaagggtt gataaataaa atcggggcgt tgctgtatca aagccaaaag
     2221 ccgtgggatt acgcccacgc cattgccaaa cgctcgtttg gtattgagcg ggtgcaatgg
     2281 ctgacagatg atcagttgca taaattagtg cagatattgg cgagttataa ccataggcac
     2341 ggaatgagtg ttaaataata aatttattgc atagcccact ttaaatagtg ggcttttttg
     2401 tggtagattt taggtgtttt ttaatcaact tttaaaggta tttaaaatga aagaactgct
     2461 attaacaacc ttatgcttat tgtcgttacc agcaatagca atgacagaaa aagctgaaca
     2521 agaaacagca aatgctcttg taagtggtga ttatcaacag ttaagaaatg tagcttacgg
     2581 aatggaaact ggttcgtttg ggcacgatca caatcctatt gctgcttgtg ctttacgccg
     2641 tgttattttg cttgttaatt cggacaaggt tgatatgact gactttaaca acgaggcgat
     2701 tgcttgccgt aaaattgagg ttacagataa tcaacaggct tgggaaactg cctttaccat
     2761 tgcaaaatcc atttctgcaa ccaagaaaaa ataaatttag accgctttca agcggtcttt
     2821 tttatttaca taaaaaaatt taagaaaaaa acg
//
LOCUS       DANLZD010000207         2692 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.208, whole genome shotgun sequence.
ACCESSION   DANLZD010000207 DANLZD010000000
VERSION     DANLZD010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2692
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.208"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            139..579
                     /locus_tag="PXE26_002487"
     CDS             139..579
                     /locus_tag="PXE26_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDL5595020.1"
                     /translation="MTACKNGLGFLVLRLFLAYEFFEAGLSKLNGENWFASIQESFPF
                     PFNVLPADLSWAIASGAEILLPILLTLGLFTRFSALGLMILTAVAWYAVHAGNGYNVC
                     NNGYKMALIYLVMLVPLLLQGAGSLSLDFLLQKKSPTKRWLKFL"
     gene            605..892
                     /locus_tag="PXE26_002488"
     CDS             605..892
                     /locus_tag="PXE26_002488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595021.1"
                     /translation="MKKATLMALAGALTMATATVNAETKSVKADACMEVKDGKCVKTK
                     ATEGKCGEGKCGATSSEPKATEGKCGEGKCGATAPKAAEGKCGEGKCGASK"
     gene            993..1916
                     /locus_tag="PXE26_002489"
     CDS             993..1916
                     /locus_tag="PXE26_002489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 family protein"
                     /protein_id="HDL5595022.1"
                     /translation="MLKFTGAGLGYRRDLADGFLSLTDNNIINFMEVAPENWLKMGGQ
                     ARYNFDKVAEKIPVIIHGLSLSLGGQAPLDMTLLKGIKNMQQQYNSFFFSDHLSYCEC
                     EGHLYDLLPMPFTDEAVHHVANRIKQVQDYLGMQISLENTSYYLHSPTSTMNEVEFLN
                     AIAQEADCGIHLDVNNIYVNGVNHGLLDPFVFIDQVDKSRVNYIHIAGHDEDHGAAED
                     VKMTEGESFNMVKGELRHLPTLLVDTHGEAVQKTVWDLLEYTYEHLPHIPPTLLERDF
                     NFPPFQELISEVQHIMSLQKKYAKTRLKNAA"
     gene            1906..2646
                     /locus_tag="PXE26_002490"
     CDS             1906..2646
                     /locus_tag="PXE26_002490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding domain-containing protein"
                     /protein_id="HDL5595023.1"
                     /translation="MPLKLVEEHKPLLKEIQAEFANAIRHNDVKLMSGNISPQRLGVY
                     SRLVRNNTLGFIDRCYVQLPQHLSPEEWVAVKEKFIREGKAHSPFFQDIAGEFLNFCR
                     ENGCMPPHLLELMDFENAQLLAEVSMATVPSEFEWDNDTIMQFSGAAELRQYAVNFIR
                     SEFKQFDFEPTNVLIWRDTEFGIYYNRLEELDFFLLSSLQEGANSLNGLLAELSEFTE
                     QNLELKALLRQLWEKWVEAEVIYPVYPE"
BASE COUNT          803 a          533 c          579 g          777 t
ORIGIN      
        1 ctataaaaat aggttataat ttttcacaca ttttttgtaa taaacgtata cttattctgt
       61 ctaataatca catttttagt taggagcatt tttatgtcat cattttcgtc atcattttca
      121 actcagtcag cttgctcaat gacagcttgt aaaaacggct tgggctttct tgtattacgt
      181 ctatttcttg cttatgaatt ttttgaagca gggttatcaa aactaaacgg tgaaaattgg
      241 tttgcctcaa ttcaagagag cttcccattc ccctttaacg tactaccagc cgatcttagc
      301 tgggctattg ctagcggagc ggaaatctta ctgcctattt tactcacttt gggtctgttc
      361 acccgcttca gtgcgttagg attaatgatc ttaacagcgg tagcgtggta tgctgttcac
      421 gctggcaatg gctacaatgt ctgcaacaat ggctataaaa tggcactcat ttatttagtg
      481 atgttagtac cacttttatt acaaggtgct ggctcgctct ctctcgattt tctgttacag
      541 aaaaaatccc caaccaaacg ctggttgaaa ttcctttaat cccttaattt atggagaatt
      601 tttaatgaaa aaagcaactt taatggcatt agctggtgca ttaactatgg caaccgcgac
      661 tgtaaacgct gaaactaaat cagtgaaagc agatgcttgt atggaagtaa aagatggcaa
      721 atgtgtaaaa accaaagcta cagaaggtaa atgtggcgaa ggcaaatgtg gagcaacctc
      781 ttctgagcca aaagcaaccg aaggtaaatg cggcgaaggg aaatgtggag caacggcacc
      841 aaaagcggca gaaggtaaat gcggtgaagg caagtgtgga gcttctaagt aagtagcgaa
      901 ggtgcgtttt ctaaacgcac ctaacctctt ataaacacaa tctacaagcg gttaaattcc
      961 gctgattttt tgcaaattaa aggaacaaga cgatgttaaa atttactggt gccggtctag
     1021 gctatcgccg tgacctagcg gacggatttt tatctctcac agataacaat ataattaatt
     1081 ttatggaagt agccccagaa aactggctga aaatgggcgg tcaggctcgg tataacttcg
     1141 ataaagtcgc tgaaaaaatc cctgttatta ttcacggttt atccctctct ctcggcgggc
     1201 aagcgccttt agatatgacg ctactaaaag ggatcaagaa tatgcagcag cagtataact
     1261 cctttttctt ctctgatcat ttaagctatt gcgaatgtga agggcattta tatgacctgc
     1321 tgccaatgcc gtttaccgat gaagccgtac atcacgtggc aaatcgcatt aaacaagtgc
     1381 aagattattt aggtatgcaa atttcccttg aaaatacgtc ctactatctg cattcaccaa
     1441 ccagtacgat gaatgaggta gagtttctca atgcaattgc ccaagaagcg gattgtggca
     1501 ttcaccttga tgtgaataat atttatgtta atggtgtcaa tcacggcttg cttgatccat
     1561 ttgtatttat tgatcaagtg gataaatctc gtgtcaatta tattcatatt gcaggccacg
     1621 atgaagatca cggtgcggcg gaagacgtta aaatgaccga gggtgaatca tttaatatgg
     1681 taaaaggcga actacgtcat ctgccaactt tactggtcga tacacacgga gaagctgtac
     1741 aaaaaactgt gtgggattta ctagagtaca cctatgaaca cctaccgcat attccaccaa
     1801 cactgttaga acgggatttc aacttcccac cgtttcaaga actgattagt gaagtacagc
     1861 acattatgag cttacagaaa aaatatgcaa aaacgaggct aaaaaatgcc gcttaaactc
     1921 gttgaagaac acaaaccgtt actcaaagag attcaagccg agtttgcgaa tgcaattcgc
     1981 cataacgatg taaagctgat gagtggtaat atctctccac agcggcttgg cgtctattct
     2041 cgcttggttc gcaataatac tctcggtttt atcgaccgtt gttatgtaca gctccctcaa
     2101 catctaagtc ctgaagaatg ggttgccgtt aaagaaaaat ttatacgaga aggtaaggct
     2161 cattcgccct ttttccaaga tattgctggc gaatttctca atttttgccg agaaaatggc
     2221 tgtatgccac cacacttgct tgagttgatg gactttgaaa atgctcaatt actggctgag
     2281 gtatcaatgg caaccgtacc atcagaattt gaatgggata acgatactat aatgcagttt
     2341 tctggtgcag ctgagctgcg tcaatatgcg gtaaacttta tccgtagcga gttcaaacag
     2401 tttgactttg agccgaccaa cgtactgatt tggcgagata cggaatttgg catctattac
     2461 aaccgcttgg aagagctgga tttcttcctg cttagctcgt tgcaagaggg ggcaaattcc
     2521 ctgaatggct tactagcaga actcagcgag tttaccgagc aaaatctgga gctaaaagcc
     2581 ttgttacgcc aactttggga aaaatgggtt gaagcagagg tgatttatcc tgtctatcct
     2641 gaatgaggat aaggtatgtg atatgtactg acatacatag taggggcggg tc
//
LOCUS       DANLZD010000208         2610 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.209, whole genome shotgun sequence.
ACCESSION   DANLZD010000208 DANLZD010000000
VERSION     DANLZD010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2610)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2610)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2610
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.209"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            152..442
                     /locus_tag="PXE26_002491"
     CDS             152..442
                     /locus_tag="PXE26_002491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000027827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HDL5595024.1"
                     /translation="MALRPLHDKVILKREEVETKSAGGIVLTGSAATKSTRGKVIAVG
                     TGRILDNGSVQPLAVKVGDVVIFNEGYGVKTEKIDGEEVLILAEHDILAIVE"
     gene            511..2151
                     /gene="groL"
                     /locus_tag="PXE26_002492"
     CDS             511..2151
                     /gene="groL"
                     /locus_tag="PXE26_002492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608625.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HDL5595025.1"
                     /translation="MAAKDVKFGNDARVKMLKGVNILADAVKVTLGPKGRNVVLDRAY
                     GAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNE
                     GLKAVAAGMNPMDLKRGIDKAVAAVVEELKAISKPCETSKEIEQVGTISANSDSTVGQ
                     LIAQAMEKVGKEGVITVEDGTGLEDALDVVEGMQFDRGYLSPYFINKPEAGTVELENP
                     YILLVDKKVSNIRELLPVLEGVAKAGKPLLIIAEDIEGEALATLVVNTMRGIVKVAAV
                     KAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKATLEELGQAKRVVISKDNTTIID
                     GIGDETQIKGRVAQIRQQIEDSTSDYDKEKLQERVAKLAGGVAVIKVGAATEVAMKEK
                     KDRVDDALHATRAAVEEGIVPGGGVALVRAANKVADTLKGDNEEQNVGIKLALRAMEA
                     PLRQIVANAGEEASVVARNVKEGSGNYGYNAGTEQYGDMLEMGILDPTKVTRSALQFA
                     ASIAGLMITTECMITDLPKEEKLDPAAMGGMGGMGGMM"
     gene            complement(2276..2602)
                     /locus_tag="PXE26_002493"
     CDS             complement(2276..2602)
                     /locus_tag="PXE26_002493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5339 domain-containing protein"
                     /protein_id="HDL5595026.1"
                     /translation="MLKRILGITLCTILVSSNAIASVKTSSLTVAKPTLSKNLPTECE
                     KMFNTANKLVSDAERQPGTHTQVLKMKNKLSLTKQQILKMDSELQQKSCEKGLTALNS
                     LKQKHQ"
BASE COUNT          826 a          425 c          622 g          737 t
ORIGIN      
        1 atatagtttt atcaaaaatg gtcaaatttg taaaaaattt tacaaatttg accgcttgca
       61 cttgaaactc taaaatctgc ctttatattg ttaggcgtta cgcattttgc gtgaagtttt
      121 atttattcat ttttaagaaa aggaacatat tatggcactt cgtccattac acgataaagt
      181 tattttaaaa cgtgaagaag ttgaaacaaa atcggcaggc ggtattgttt taaccggttc
      241 ggcagcaaca aaatcaaccc gtggcaaagt aattgcagta ggaacaggtc gcattttaga
      301 caatggttct gttcagcctt tagcagttaa agtgggcgat gtagtgattt ttaacgaagg
      361 ctacggcgta aaaaccgaga aaattgacgg cgaagaagtg ctaattttag cagagcacga
      421 tattttggcg attgtagaat aatttcgttc tgcacaagcg gttaaaaaag caaaattttt
      481 tacatatttc aaatacaaag gatttagaaa atggcagcaa aagacgtgaa atttggtaac
      541 gatgcacgcg taaaaatgtt aaaaggcgtg aatattttag ccgatgcggt aaaagtaact
      601 ttaggtccga aaggtcgtaa tgtggtgtta gatcgtgctt atggtgcacc aacgattaca
      661 aaagacggtg tgtcggttgc ccgtgaaatc gaattagaag ataaatttga aaatatgggg
      721 gctcaaatgg tgaaagaggt tgcctctaaa gccaatgatg ccgccggtga cggtacaact
      781 accgcaactg tattagctca agcgattgta aacgagggct taaaagcagt ggctgcgggt
      841 atgaacccaa tggatttaaa acgtggtatc gataaagcgg ttgcagcagt ggttgaagag
      901 ttaaaagcga tttcaaaacc gtgcgaaacc tcaaaagaaa ttgagcaagt agggacgatt
      961 tctgcaaact cagattcaac agtcggtcaa ttaattgctc aagcaatgga aaaagtgggc
     1021 aaagagggcg tgattactgt tgaagacggt acaggtttag aagatgcatt agacgtggtt
     1081 gagggtatgc aatttgaccg tggttactta tcgccatact ttatcaataa accggaagcc
     1141 ggtacggttg agttagaaaa cccatatatt cttttagtgg ataaaaaagt gtctaacatt
     1201 cgtgaattat taccggtgtt agaaggtgtt gcaaaagcag gtaaaccgtt attaattatt
     1261 gccgaagata ttgaaggcga ggcgttagct accttagtgg tgaacactat gcgtggtatc
     1321 gtgaaagtgg cggcagtgaa agcacctggc tttggtgatc gccgtaaagc aatgttacaa
     1381 gatattgcga tcttaactgc aggtactgtg atttctgaag agatcggtat ggagcttgaa
     1441 aaagcaaccc ttgaagagct tggtcaagca aaacgtgtgg ttatcagcaa agataacacc
     1501 acaattattg acggtattgg tgatgaaact caaatcaaag gtcgtgtagc acaaatccgc
     1561 caacaaatcg aagattcaac ttcagattac gacaaagaaa aactacaaga gcgtgtagca
     1621 aaattagccg gtggtgttgc ggtaattaaa gtaggtgcgg caactgaagt ggctatgaaa
     1681 gagaaaaaag accgtgttga tgatgctctt cacgcaaccc gtgctgcggt ggaagaaggt
     1741 attgtaccgg ggggcggagt tgctttagtg cgtgcagcca acaaagtggc tgatacacta
     1801 aaaggcgata acgaagagca aaatgtaggt atcaaacttg ccttgcgtgc aatggaggct
     1861 ccattacgcc aaatcgttgc caatgcaggt gaagaagcct cagttgtagc ccgcaacgtg
     1921 aaagaaggtt caggcaacta cggctataac gcaggtacag agcagtacgg cgatatgctt
     1981 gaaatgggaa ttttagaccc aactaaagtg actcgttcag cacttcaatt cgcggcttct
     2041 attgcaggtt taatgatcac tacagaatgt atgattaccg atctgccaaa agaagagaaa
     2101 ttagatcctg ccgcaatggg cggtatgggg ggaatgggcg gaatgatgta attgcccatt
     2161 gagtgaacaa aagctactga aattaattca gtagcttttt tgttggtaac aagtggttaa
     2221 atttatgcta ttttttgcaa ataaaaaacc aagcaagtaa gcttggtttt agcgtttatt
     2281 gatgtttttg tttaaggctg tttagtgctg ttaaaccttt ctcacaactt ttttgctgta
     2341 attcagaatc catttttagg atttgttgct ttgttaaaga aagtttattt ttcattttta
     2401 gcacttgagt atgagtacca ggctgtcttt ctgcatcaga gaccaattta tttgccgtgt
     2461 taaacatttt ctcacattca gttggcaaat ttttacttaa agtaggtttt gcaactgtaa
     2521 gtgatgaggt tttaacactt gctatagcat tactggaaac caatatggta caaagtgtta
     2581 ttcctaaaat tctttttagc atgcgttctc
//
LOCUS       DANLZD010000209         2571 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.210, whole genome shotgun sequence.
ACCESSION   DANLZD010000209 DANLZD010000000
VERSION     DANLZD010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2571)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2571)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.210"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..1539
                     /locus_tag="PXE26_002494"
     CDS             <1..1539
                     /locus_tag="PXE26_002494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase/relaxase domain-containing protein"
                     /protein_id="HDL5595027.1"
                     /translation="VHDIGKVVVDIEITLKDGSRWFAWNGQPPQPYKFKYIKGRDYHL
                     HPVLGGFLANQLIPKSAFDWLGQYPEVISSLMYAMSGHNDKAGLLSEIVQKADQHSVT
                     LAIGGDVNKLVQRPVNSLPKQIVLALRYLLEQKIKLNTPKGPADGWFTEDGLWLVSKT
                     AADNIRTYLLGQGISVPKDNPKLFDEMQSLGIVEESPSGGAIWSCRIQADSGWTPATT
                     FTLLRVKPEVAWENINDRPAYFAGKVKVIEQITEEVNAEVQPPLVEETTKISLLPSKQ
                     SEAIIPSEETEISKAITSSDNATSAEVIINNENDLTSFVLDMFAPTETIEQNISVISS
                     NKEQQIVMTTLTEQEKVPPKKVKLEKSKKKNLQLTTLEPWNDMINPITGKEFVNWLKE
                     GIATNKFAINKPSAKLHIVDGNLFLVTPVIFEMYLQECGQPYDKETINNLQYDFQGLG
                     LHSLKKTMTNGKPDTINFWKCDVIGPRKTSSLTGYLIKNTHLLFGDKMLLNNHCLTLQ
                     EEDT"
     gene            1579..2457
                     /locus_tag="PXE26_002495"
     CDS             1579..2457
                     /locus_tag="PXE26_002495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL5595028.1"
                     /translation="MFFYRHYLRADTKRSYNNIIRIIKKRYPNLNANDVTTDMLIEWR
                     NQVVGNTIKAVTWNNYVRHLKALYNFAIAQGLLCMSSNPFNHLFIRESRRKKKTYSSE
                     QLHKIDYILHNNIILPSFLKPSWFILAIIMTLRCTGIRRGQLVKLKIGDVNLSNRTIY
                     ISPEINKNHDYHIVPISDSLYPHIERLIQELKIHKQTDDCQLFNLNLFSRYTRRKGQP
                     MSQNQLTHIFRHISDLVGFTSSPHRFRHTVATQLMKKPENVYVVKKLLGHKDISVTLG
                     YIEYDVEMLRDTVNLL"
BASE COUNT          876 a          430 c          500 g          765 t
ORIGIN      
        1 gttcatgata ttggcaaagt tgtggttgat attgaaatca ctcttaaaga cggctctcgt
       61 tggtttgctt ggaatggaca gccacctcaa ccttataaat tcaaatacat caaaggtcga
      121 gactaccatc ttcatccggt gctaggagga ttccttgcaa atcagctcat tcccaagtct
      181 gcgtttgatt ggctgggaca gtatccagaa gtcatttctt cactgatgta tgcaatgtct
      241 gggcataacg ataaagccgg gcttttatct gagatcgtgc agaaagccga tcagcatagt
      301 gttacgctag caatcggtgg cgatgtgaat aagctggtac agcgaccagt taattcattg
      361 ccgaagcaaa ttgtgctggc tctacgttat ttactggagc agaaaatcaa attaaatacg
      421 ccaaaaggac cagcagacgg ctggtttacc gaagatgggc tgtggctggt aagtaaaact
      481 gctgccgata atatccgaac ttatttactg ggacagggga tttccgtgcc taaagataat
      541 ccaaaactgt ttgatgaaat gcaatctctt ggtattgtgg aagagtctcc ttccggcggt
      601 gcaatttgga gctgccgtat ccaagccgat tccggttgga caccggcgac aacatttacg
      661 ctattacgag ttaaaccgga ggttgcttgg gagaatatca acgatagacc ggcgtatttt
      721 gccggaaaag tcaaagtgat tgaacagata actgaagagg tcaatgcaga ggttcagcct
      781 ccattagttg aagaaaccac taaaatttct ctattaccga gcaagcaatc ggaggctatt
      841 attccgtctg aggaaacgga aatatcgaag gcaattacaa gttcagacaa tgcaacatct
      901 gcggaagtaa tcataaataa tgaaaatgat ttaacttctt ttgtattgga tatgtttgct
      961 cctacagaga caattgagca aaatatttct gtcatttctt caaataaaga gcagcaaatc
     1021 gtaatgacaa cacttacgga acaagaaaaa gttccgccga aaaaagttaa attagagaaa
     1081 agtaagaaaa aaaatcttca attaaccact ctagaaccat ggaatgatat gattaatcca
     1141 attactggaa aagaattcgt aaattggttg aaggagggga tagcaaccaa taaatttgca
     1201 attaacaaac cttctgcaaa attacatata gtagatggta atttattttt agtcacacca
     1261 gttatttttg aaatgtattt gcaagaatgt ggccaacctt atgataagga aactataaac
     1321 aatcttcagt atgatttcca ggggcttggt cttcattctc ttaaaaaaac catgactaat
     1381 ggtaagccag atacaataaa tttttggaag tgtgacgtga ttggtcctag aaagacttcc
     1441 tctttaacag gatatttgat aaaaaatact catctcttat ttggggataa aatgttacta
     1501 aataaccact gtttaacttt acaggaagag gacacataat atggattcta agatttcctt
     1561 cgatatatta ttggaacgat ttttttctat cgtcattatt tacgggcgga cacgaaacga
     1621 agttataaca atattattcg aattatcaaa aagcgttatc caaacttaaa tgcgaatgat
     1681 gtgactactg atatgttaat tgaatggcgt aatcaagttg ttggtaatac aattaaagct
     1741 gtgacgtgga ataattatgt gagacaccta aaagcattat ataattttgc gatagcacag
     1801 gggctacttt gcatgagtag taatccattt aatcatttat ttattagaga atctagaaga
     1861 aaaaagaaaa cttattccag tgagcagttg cataaaatcg attatattct acataataat
     1921 atcatcttac ctagtttttt aaaacctagc tggtttattc ttgctatcat tatgacattg
     1981 agatgcacag gaattaggag agggcaattg gttaaactga aaatcggtga tgttaattta
     2041 tcaaatagga cgatctatat ttcaccagaa attaataaaa accatgatta tcatatagta
     2101 ccgatatccg attcacttta tccccatata gaaaggctga ttcaggagtt aaagatccat
     2161 aaacaaacgg atgattgcca gttatttaac ctcaatttat tttctcgtta tactcgtagg
     2221 aaaggtcagc cgatgagcca aaaccagctt actcatatat ttaggcatat ttccgatttg
     2281 gttggcttca cgtcatcacc acatagattt cggcatacag tagctactca attgatgaag
     2341 aaacctgaaa atgtttatgt agttaagaaa ttattaggtc ataaagatat cagcgttaca
     2401 ttaggatata ttgaatacga tgtggaaatg ctacgagaca ccgtgaactt actctaataa
     2461 aagagaaatg agagaaaact attctctcat ttattgtgat aaataggaaa cttctgtctt
     2521 attttcagat gaattgattt tgagaacttt atcaaaatat aagcgtaaat a
//
LOCUS       DANLZD010000210         2508 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.211, whole genome shotgun sequence.
ACCESSION   DANLZD010000210 DANLZD010000000
VERSION     DANLZD010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2508
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.211"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            44..2431
                     /locus_tag="PXE26_002496"
     CDS             44..2431
                     /locus_tag="PXE26_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exo-alpha-sialidase"
                     /protein_id="HDL5595029.1"
                     /translation="MEKMMRKINQLIISPYFFLSILSASANSDFWKSDLNFNLTNITK
                     RVGVDNFTTPVAGEPWAGIGPNGEAAGTAPLYYSRIPAMQVTEDNKLVVMFDLRWNRA
                     YDQDRIDPGIAISSDGGHTWTKKTAWSFDRTNHPARRSMDPTLLHNPIDNSLYVMHGT
                     WSMSDQQWYGGRVPHFNSGSWAATIYKSTDGGLNWEKNTEFSKFSNLDVFSKVTKNGK
                     PTLGFLGGVGSGIVMQDGTLVFPIQTAHQNGIATTIMYSKDNGKTWEMPEIDNPVAPN
                     QSSLENMVFELEPGKLVMTGRGNSRWAYSSTDMGKTWELFTPTNGLLPTSSQPTQGSS
                     IYVTLPNGRKVLLISKPDGKNDGWKRGDITLWMLDAKDPSHKHKVHIIRPGSGNAAGA
                     GYSSLAYKEGNLFVAFENDGDISVKNLTEHIAEMEAKAIEWGLPDELTPALDKINALP
                     YLNKAQKETLVEKMRRANDTAIAQSFVINKEMYNLKNNSDELDKLAKNITKALPSQQN
                     IYQRALAYVNKVTNTADTTYLNYNGIMDTYANLYESYLALNTKLDFTRYIQKARKFNE
                     YNTDILYRSFDNFFAHYDTGVKHNNLSLGLNTKLSENLRGGLFFEYSNKNRNSVQIGA
                     RAKYEMDNHQLSGFLRYRGVKHKDMLARNNSVDGYLNYAYRIQLDDKLSISPSVGAYV
                     SRSSRSLIDEDLAINSRTVYASDVGLNIHYKLNDIDAYIRPSIGFVNGDITLSQSNDM
                     TNTYKIKDKSNVYSVTTGLKKRFANGVALGADFKLHRYGSQTTESNFGLNVSYNW"
BASE COUNT          819 a          442 c          486 g          761 t
ORIGIN      
        1 tagctgttca gctaaaaatt agtctttgca ctttatcccc ctaatggaga aaatgatgag
       61 aaaaatcaat cagttaatca tatccccata ctttttccta agtattttat ctgcttccgc
      121 taactctgat ttttggaaaa gcgaccttaa ttttaatctc acaaatatta ccaagcgtgt
      181 cggagtcgat aactttacca ctccagtagc tggcgagcct tgggctggta ttggtccaaa
      241 tggtgaagct gcaggtactg cgccattata ttatagccgt attccagcta tgcaagttac
      301 cgaagataac aaattagttg ttatgtttga tttacgctgg aatcgtgcgt atgaccaaga
      361 tcgtattgat cctggtattg cgatttcttc cgatggtggc catacttgga cgaagaaaac
      421 cgcttggtct tttgatagaa ctaatcaccc agcacgccgt tcaatggatc caacgctatt
      481 acataatcct attgataata gtttatatgt aatgcacgga acttggtcta tgtcggatca
      541 acaatggtat ggtgggcgtg ttcctcactt taatagtggc agctgggcag ctaccattta
      601 taaatctact gatggtggtt taaattggga gaaaaatact gagtttagta aattcagcaa
      661 tttagacgta ttttctaaag tcaccaaaaa tggaaaacct accttaggct ttttaggcgg
      721 ggtcggatct ggaattgtaa tgcaagatgg tacgttggtt ttcccaattc aaaccgcaca
      781 tcaaaatggt attgcgacca ctattatgta ttctaaggat aatgggaaaa cttgggaaat
      841 gccagaaatt gacaacccag ttgcaccgaa ccaaagttct ttagaaaata tggtgtttga
      901 actcgaaccg ggtaagctag tgatgactgg acgaggaaac agtcgctggg catactcttc
      961 tactgatatg ggtaagacct gggaattatt tactccaact aatggattat taccaactag
     1021 ctcacaacca actcaaggct cttctatcta tgtaacacta ccaaatggtc gaaaagtgct
     1081 actaatctct aaaccagatg gaaagaatga tgggtggaaa aggggtgata ttacactttg
     1141 gatgctagat gcaaaagatc catcgcacaa acacaaggtg catattattc gtccaggttc
     1201 aggtaatgcc gctggtgctg gttattcctc tttagcctat aaagaaggga atttatttgt
     1261 tgcttttgaa aacgatggtg atatttcagt aaaaaattta actgaacata ttgctgaaat
     1321 ggaagcaaaa gctatcgaat ggggattacc agatgaactt actcctgctt tggataaaat
     1381 caatgcactg ccttatctca ataaagctca aaaagagacg ctagtcgaaa aaatgcgtcg
     1441 tgctaatgat actgcgattg cacaatcttt tgtgattaac aaagaaatgt ataatctgaa
     1501 aaacaatagt gatgagctgg ataaattggc aaaaaatatt actaaagcac tgccgtctca
     1561 acagaatatt tatcaaagag ccttagccta tgtgaataaa gtcaccaata cagcggatac
     1621 cacttattta aattataatg gtattatgga tacctatgct aatttatatg aaagctattt
     1681 ggctttaaat actaaattag acttcactcg ctacatccaa aaagcgagaa agttcaatga
     1741 atataacact gatattttat atcgtagctt tgataatttc tttgcccatt acgacacagg
     1801 tgtaaaacac aataatctat ccttaggctt gaatacaaaa ttaagtgaga atttacgtgg
     1861 tggcttattc tttgaataca gtaataaaaa tcgtaatagc gtacaaattg gtgcaagagc
     1921 taaatatgaa atggataatc accaactttc tggcttctta cgctatcgtg gcgtaaaaca
     1981 taaagatatg ctagcacgta ataacagtgt tgatggctac ctaaattatg cttatcgtat
     2041 tcaattagat gataaattaa gcattagccc atcagttggt gcttacgttt cacgttcttc
     2101 tcgctcatta atagatgaag atcttgcgat taatagccgc acggtctatg caagtgatgt
     2161 aggattgaat atccattata agctaaatga tattgatgct tatattcgtc caagtatagg
     2221 ctttgtcaat ggtgatataa ctttatctca atctaatgat atgacaaaca catacaaaat
     2281 aaaggataaa agtaacgtgt attctgtcac gacagggttg aaaaaacgct ttgcaaatgg
     2341 tgtggcatta ggggctgatt tcaaattaca tcgttatggt tctcaaacta ctgaaagtaa
     2401 tttcggtcta aatgtaagtt ataactggta ataccgtaaa ctgattacga tttaaaagtt
     2461 agactagccc aagactgagt tctatattcc atagagctca gtctttta
//
LOCUS       DANLZD010000211         2464 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.212, whole genome shotgun sequence.
ACCESSION   DANLZD010000211 DANLZD010000000
VERSION     DANLZD010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2464)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2464)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2464
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.212"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..256)
                     /gene="raiA"
                     /locus_tag="PXE26_002497"
     CDS             complement(<1..256)
                     /gene="raiA"
                     /locus_tag="PXE26_002497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HDL5595030.1"
                     /translation="MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQ
                     PNSFQVEATIGTPLGDLVAKAEHEDLYTAIFDVKKKLEGQL"
     gene            436..1377
                     /locus_tag="PXE26_002498"
     CDS             436..1377
                     /locus_tag="PXE26_002498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LpxL/LpxP family Kdo(2)-lipid IV(A)
                     lauroyl/palmitoleoyl acyltransferasee"
                     /protein_id="HDL5595031.1"
                     /translation="MSEKKQLPPFQTQFLHPKYWGLWLGLGVFKLILCLPYPILVKIG
                     LGLGKLFTKLGFGKRRMRIARRNLELCFPHYSAEKVEELVEENMKSVGMAIIETGMAW
                     FWSDKRILKWSKIEGLEHLTQRDQERGILLVGVHFLTLELGARIIGLHHQGVGVYRPN
                     DNPLLDWIQFRGRVRSNKAMLDRKDVRGMIRALKNGEMIWYAPDHDYGRRNSVFVPFF
                     AVEETCTTAGSYMLLRSAPKSLVIPFSPIRNLDYSGYTVKVSPAVDFSQCQNEVETAI
                     LMNRVVEREIMAALTQYMWLHRRFKTRPNEGDQSLYD"
     gene            1473..2360
                     /gene="dapA"
                     /locus_tag="PXE26_002499"
     CDS             1473..2360
                     /gene="dapA"
                     /locus_tag="PXE26_002499"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HDL5595032.1"
                     /translation="MATPLFHGSIVALVTPMTHGEVDYQDLKKLVEYHIQAGSHAIVS
                     VGTTGESTTLSIDENVKVIKKTVEFADGRIPIIAGTGSNATSEAITMTKLLANSGVAG
                     CLSVVPYYNKPTQEGMYLHYKAIAESTDLPQILYNVPGRTGSDLKPETIGRLAKIENI
                     VAVKEATGDLSRLPLIKQLAGEDFIFLSGDDATGFESMKLGGQGVISVTNNVAAADMA
                     KMCELALAGQFTEAEEINNRLMALHHDLFVESNPIPVKWAAYKLGLISEPNLRLPLTT
                     LSESAQPVVLKALQQAGLI"
BASE COUNT          761 a          385 c          516 g          802 t
ORIGIN      
        1 ttaactgacc ttctaatttc ttcttaacat caaaaattgc agtatataaa tcttcatgtt
       61 cagctttagc gactaaatca cctaaagggg tgccaattgt tgcttcaact tggaatgagt
      121 taggttgttt tatcagcata aaatgtgggt ttatcaattg ggtgtggtat ttttctaact
      181 tagctaaacg ctcctcaata tgagtacgga ttgcaggggt aatgtccatt tgtttgcttg
      241 aaatatttaa tgacataaca ttttcctctt gtttagttaa ggcttttgcc gttgatattc
      301 taataaccaa aatatgctca tcactccaaa aattcaagtg aaaaatgaaa taagtttcca
      361 aaaatttgat ctacttaaca cttttagcag tttttagcta taatgtaatc ataatctagt
      421 atgtgagaat aattaatgag tgagaaaaaa cagttacctc cattccagac acaattttta
      481 caccctaaat attggggatt gtggctcggt ttaggtgttt ttaagttaat tttatgtttg
      541 ccttatccta ttttagtaaa aattggtctg ggactaggta aattgtttac taaattgggt
      601 tttggtaaac gtcgtatgcg tattgctcgc cgtaatttag agctctgttt tccccattac
      661 tctgctgaga aagtagagga attagtcgaa gaaaatatga aatcggttgg aatggcgatt
      721 attgaaactg gtatggcttg gttttggtcg gataaacgta ttcttaaatg gtctaaaatc
      781 gaagggctag agcatttaac acagcgtgat caggaaaggg gtattttact tgtaggggtg
      841 cattttctga ctttagaact cggtgcaaga attattgggc tacatcatca aggagtaggg
      901 gtttatcgac cgaatgataa tccattatta gattggatac agtttcgagg acgtgttcgc
      961 tcaaataaag cgatgttaga tcgtaaagat gtgcgtggaa tgattcgagc tttaaaaaat
     1021 ggcgagatga tatggtacgc gcctgatcac gattatggaa gacgaaatag cgtttttgta
     1081 ccattttttg cagtggagga aacttgtact actgcgggta gttatatgtt acttcgttct
     1141 gccccaaaga gtttagtgat cccgtttagc ccgattcgaa atttggacta ttcaggctac
     1201 acagtaaaag tcagtcctgc cgttgatttt agtcaatgtc aaaatgaagt tgaaacggct
     1261 attttaatga atcgggtggt agaacgtgaa attatggctg cgctaactca atatatgtgg
     1321 ctacatcgcc gttttaaaac tcgcccaaat gaaggtgatc aaagcctata tgattaattt
     1381 taaataattt caaaaaagtg cttgcatatt taagctgaat tttgcaatct agcaatgtta
     1441 tcaagcataa taaaaaaata caggagatga ttatggcgac ccctttattt cacggtagta
     1501 tcgtagcatt agttacacca atgactcatg gtgaggtaga ttatcaggat ttaaaaaaat
     1561 tagttgagta tcatattcaa gcaggttctc acgctattgt atctgttggt acaacaggtg
     1621 aatctaccac attaagcatt gatgaaaatg ttaaggtgat taagaaaacg gttgaatttg
     1681 ctgatggacg tattccaatt attgcaggaa ctggttctaa tgcgaccagt gaagctatca
     1741 ctatgactaa attattagca aacagtggtg tagctggttg tttaagtgta gtgccttatt
     1801 acaacaagcc aacgcaagag gggatgtact tacactacaa agcgattgca gaaagtacag
     1861 atttaccaca aattctgtat aatgtgccgg ggcgaacagg gagtgattta aaacctgaaa
     1921 caatcggtcg cttagcgaaa attgagaata ttgttgctgt gaaagaagca acgggtgatt
     1981 taagccgctt acctttaatt aagcaattag ccggtgaaga ttttattttc ttaagtggtg
     2041 atgatgctac cggttttgag tctatgaaat taggtggtca aggggtgatc tcggtcacca
     2101 ataatgttgc tgctgctgat atggcaaaaa tgtgtgagtt agctcttgcc ggtcaattta
     2161 ctgaagcaga agaaattaat aaccgcttaa tggcgttaca ccatgactta tttgtcgaat
     2221 ctaacccgat tccggtgaaa tgggctgctt ataaattagg tttaattagt gagcctaatt
     2281 tacgtttacc gcttaccaca ctgtctgaat cagcacagcc tgtagtgtta aaagcattac
     2341 aacaagcggg cttaatttag ttattttttg caaatcaaat ttgaaaccgg ttaagttaat
     2401 tctaaccggt tttttcatat ctaaaagaaa tttccacata aaaataaaat tctaaatttc
     2461 tttg
//
LOCUS       DANLZD010000212         2438 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.213, whole genome shotgun sequence.
ACCESSION   DANLZD010000212 DANLZD010000000
VERSION     DANLZD010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2438
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.213"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(116..191)
                     /locus_tag="PXE26_002500"
     tRNA            complement(116..191)
                     /locus_tag="PXE26_002500"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(156..158),aa:Thr,seq:ggt)
     gene            complement(195..269)
                     /locus_tag="PXE26_002501"
     tRNA            complement(195..269)
                     /locus_tag="PXE26_002501"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(234..236),aa:Gly,seq:tcc)
     gene            complement(313..397)
                     /locus_tag="PXE26_002502"
     tRNA            complement(313..397)
                     /locus_tag="PXE26_002502"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(361..363),aa:Tyr,seq:gta)
     gene            complement(432..507)
                     /locus_tag="PXE26_002503"
     tRNA            complement(432..507)
                     /locus_tag="PXE26_002503"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(472..474),aa:Thr,seq:tgt)
     gene            754..1704
                     /gene="coaA"
                     /locus_tag="PXE26_002504"
     CDS             754..1704
                     /gene="coaA"
                     /locus_tag="PXE26_002504"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HDL5595033.1"
                     /translation="MSLEKTSKITPFLTFDRQQWADLRKSVPLKLTEQDLKPLLGFNE
                     DLSLEEVRTIYLPLARLIQYYIEENLKRQTVLHRFLGIEPPKVPYIISIAGSVSVGKS
                     TSARILQALLSHYPKERKVDLITTDGFLYPLATLTEKNLLKKKGFPESYDIHSLIRFV
                     SDIKSGKRNVKAPIYSHLTYDIIPNQFNTVDQPDIVILEGLNVLQSGMNYPSSPHNVF
                     VSDFVDFSIYVDAEESLLKKWYINRFLKFRRSAFADPNSYFHHYASLSEQEAIETAST
                     IWEEINGLNLRQNILPSRERANLILIKGQDHAIETVKLRK"
     gene            1857..2396
                     /locus_tag="PXE26_002505"
     CDS             1857..2396
                     /locus_tag="PXE26_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbE family thiol:disulfide interchange protein"
                     /protein_id="HDL5595034.1"
                     /translation="MNKKFLLPLILFLALSVAFLVQLARNSQGDDPKKLESALIGKTV
                     PSFNLESVLDEKQTIDQNIVKTGKPRLLNVWATWCPTCYAEHEYLTILAKQGVEIVGI
                     DYKDERPKAIKFLANYGNPYKAIIFDPKGSLGLDLGVYGAPETFIIDGNGVIQYRHAG
                     DVNDQVWNQVLKPIYDGLK"
BASE COUNT          763 a          510 c          466 g          699 t
ORIGIN      
        1 tttctaaaag cctcttaaac aaaaacggtt acaatggaac aaaagaaccc attaaccata
       61 atgtagaaat taataccaat aaaaatttgc gtgagaaaga tagaattcag agaagtggtg
      121 ctgataggcg gatttgaacc gccgacctca cccttaccaa gggtgcgctc taccaactga
      181 gctatatcag cgcttggagc gggcagcggg aatcgaaccc gcatcattag cttggaaggc
      241 taaggtaata gccattatac gatgcccgct gttctaaatt cgtctgacct acgcgattca
      301 aaatatcaga gatggtggag ggagaaggat tcgaaccttc gaaggctgag ccaacagatt
      361 tacagtctgc cccctttggc cgctcgggaa cccctccacg ataattgaat acttatttac
      421 gcctgagtta atggtgccga ctaccggaat cgaactggtg acctactgat tacaagtcag
      481 ttgctctacc tactgagcta agtcggcgtt gctgtgtcgt aagcaagtga tgtgcattat
      541 agggaaattt taacagcgtg caagtgtttt ttaaaaaaat attaaaaaaa gcgttctttc
      601 gatttttaaa tatacaaaat gactattttt tgtaaaatac aacggatttt ctctgcataa
      661 ctacggcaaa ataagtgcat atattgtata gttacgccct taatttggta tttaattacc
      721 ttaatattcc agcaaaaaat tgagattttg gctatgagcc ttgaaaaaac cagcaaaatt
      781 actccttttc tcacttttga tcgccaacaa tgggctgatt tacgcaaatc cgttccattg
      841 aagctgaccg agcaagacct aaaaccgctt ttaggcttta atgaagatct ttcattagaa
      901 gaagtacgca ctatttattt accgcttgcc cgtttaattc aatactatat agaagaaaac
      961 ttaaaacgcc agacagtctt acatcgcttt ctcggcattg aaccgccaaa agtcccttac
     1021 attattagta ttgccggcag cgtatcggtt gggaaaagta cctctgcccg tattctgcaa
     1081 gctctgctct cccattaccc taaagagcga aaagtggatt taattaccac cgacggtttt
     1141 ttatatccac ttgcaacgct aaccgaaaag aacttactca agaaaaaagg ctttccggaa
     1201 tcttatgata ttcacagcct gattcgcttt gtatctgata ttaaatccgg caaacgcaat
     1261 gtgaaagctc cgatttattc acatttgacc tacgatatta tcccaaatca atttaatacg
     1321 gtggatcaac ccgatattgt gattttagaa gggctaaacg tgttacaaag tggaatgaac
     1381 tacccgtcca gcccacataa tgtatttgta tcggactttg tggatttttc tatttatgtg
     1441 gatgccgaag aaagtttgct gaaaaaatgg tatatcaacc gtttcttgaa attccgccgc
     1501 agtgcctttg ccgacccaaa ctcctatttc caccattatg cgagtttgtc cgagcaagaa
     1561 gcgattgaaa ccgcctcaac gatttgggaa gagatcaacg gcttaaattt acgccaaaat
     1621 attctcccaa gccgagagcg tgccaacctc attttaatca aagggcaaga ccacgccatt
     1681 gaaacggtaa aattacgcaa ataatatttt gcaaataatt gggctttttc gaccgcttgt
     1741 aataccttaa aatccgttga ataccactca acggattttt tatttaaatc aatgcttatt
     1801 caactatttt ttggtaagct aacgactttg agagtgattg atattaggca tatacaatga
     1861 acaaaaaatt tctacttcct ttaattctct ttttggcgtt atctgtggca tttttggttc
     1921 aactcgctcg caactcgcaa ggcgatgatc cgaaaaaatt agaatcagcc ttaattggca
     1981 aaacagttcc gagctttaat ttagaatcgg tattagatga aaaacagaca atcgaccaaa
     2041 atatcgtcaa aaccggcaaa cctcgcctgc ttaacgtgtg ggcaacttgg tgtccgactt
     2101 gttatgccga acacgaatac ttaaccattt tggcaaaaca aggggtggaa attgtcggta
     2161 ttgattataa agacgaacgc ccaaaagcga ttaaattctt agccaattac ggcaaccctt
     2221 ataaagcgat tatttttgac ccgaaaggct cactcggttt agatttaggt gtttatggtg
     2281 cacccgaaac ctttattatt gacggcaacg gcgtgattca ataccgccac gccggcgatg
     2341 taaacgacca agtgtggaac caagtgctta aaccgattta tgatggatta aagtaaatgt
     2401 ttgtatttcc tgctgacatt aagaaatcta taaaaagc
//
LOCUS       DANLZD010000213         2402 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.214, whole genome shotgun sequence.
ACCESSION   DANLZD010000213 DANLZD010000000
VERSION     DANLZD010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2402)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2402)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2402
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.214"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..336
                     /locus_tag="PXE26_002506"
     CDS             <1..336
                     /locus_tag="PXE26_002506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDL5595035.1"
                     /translation="CDELVTINEKIVNLTYGDQDALNIYFKGGWGALPIEYNYQVDAI
                     LELVLRREQEELARKNGYLDVIPKIIHYTSKFKPWKKELHTMQISTRKKYWFYYHLEW
                     NDILEQHQK"
     gene            complement(382..669)
                     /locus_tag="PXE26_002507"
     CDS             complement(382..669)
                     /locus_tag="PXE26_002507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL5595036.1"
                     /translation="MKNDKPIECEGCNTFDVGSILDNSETVATIQRTYESENEAKAAL
                     EKFTQKARDVESEPCEISSEITPIESGFELVAHFKFSCQAEVVIFQLGTRF"
     gene            789..1202
                     /locus_tag="PXE26_002508"
     CDS             789..1202
                     /locus_tag="PXE26_002508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PACE efflux transporter"
                     /protein_id="HDL5595037.1"
                     /translation="MTAWERVFHALLFECFAIIFTVILTSWLTSHRMVDLTAVIVMIS
                     VIAMVWNVIFNWGFDKVFTGERVQRGLGIRILHSFLFEGGLLVFTIPLVMYMLDIGWW
                     QAFVMDIGMTLFVLVYSVVFNWVYDHLRLRWVKSG"
     gene            1287..2279
                     /gene="mglB"
                     /locus_tag="PXE26_002509"
     CDS             1287..2279
                     /gene="mglB"
                     /locus_tag="PXE26_002509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HDL5595038.1"
                     /translation="MKRTILSAFALSVICGVNLSYAQSESRVGVTIYKYDDHFMTQMR
                     KDMQNEAKGFAGLKWFMNDAQNSQVKQLAQIETLLQHKMRVLAVNIVNANESKTIVEK
                     AKAYNVPVVFFNRTPSKQALESYEKAYFVSADPKEAGRIQGELIAKVWKSNPDFDLNK
                     DGKLQFVLLKGEPSDVSAERSQAVVESLNQQGVQAEEIYSDTARWRRTLARNKMNEWL
                     VENRAAEIEVVISNNDEMAIGALDALNAHEKRLPIFGIDALPETLALMKKGEIAGTVL
                     NDSSAQAKAVVKLVSNLAQGKPALKDTQWESHSSKTIYLPHIGIDKENLGQFLP"
BASE COUNT          715 a          378 c          557 g          752 t
ORIGIN      
        1 tgtgatgagt tggttactat caatgaaaaa attgtaaact taacttatgg cgatcaagat
       61 gctctcaata tttactttaa aggcggttgg ggagcattgc cgatagagta taattatcaa
      121 gttgatgcaa ttcttgaact agtattaaga agagaacaag aggaacttgc gagaaaaaat
      181 ggctatttag atgtgattcc gaaaattatc cactatacga gtaaattcaa accttggaaa
      241 aaagaactgc atacaatgca aatatctacg cgtaaaaaat attggtttta ctatcattta
      301 gagtggaacg atattttgga acaacatcaa aaatagctat catacaaaag ctgattcaag
      361 tgtttgaatc agctttttgt attagaaacg tgttcctaat tgaaaaataa ccacttctgc
      421 ttggcagcta aatttgaagt gagcaaccag ttcaaaaccg ctttcaatcg gggtgatttc
      481 actgctgatt tcacagggtt cagattcgac atcacgggct ttttgagtga atttttcaag
      541 tgccgcttta gcttcatttt cgctttcata agtgcgctga atagtagcga ctgtttcgct
      601 gttatctaaa atagaaccta catcaaatgt gttacagcct tcgcattcaa tcggtttatc
      661 gtttttcatt ggctaatcct tctaaattga tgaataatgt aggtacttta aaactaaatt
      721 gcgtaacctg caatcatcag tgaacgatta tttgatttag ttggtatttt gcaaagtttg
      781 gaggaaaaat gaccgcttgg gagcgtgtgt ttcacgcgct gttatttgaa tgtttcgcta
      841 ttatttttac ggttatctta acttcttggc tgacttctca tcgtatggtt gatttaaccg
      901 cagtgattgt gatgatttcg gtgattgcaa tggtgtggaa tgttattttt aactggggtt
      961 ttgataaggt gtttaccggt gagcgagtgc aacgtggttt aggcattcgt attttgcatt
     1021 cattcctttt tgagggcggt ttgctggttt ttactatccc attggtaatg tatatgctcg
     1081 atatcggctg gtggcaggcg tttgtgatgg atattggaat gaccttattt gtattagttt
     1141 attcggtagt ttttaattgg gtgtacgatc atttacgcct gaggtgggtt aaatctggct
     1201 aaattgtgaa ctagatcacg gtttccttac acaaaattcg ctatgcttga attggttcat
     1261 atttggcata gcaagaggga cattctatga agcgtacaat cttgagtgct tttgcacttt
     1321 ctgttatttg cggtgtgaat ctaagttacg cacaatctga aagcagagtg ggggtaacga
     1381 tttacaaata tgatgaccat tttatgactc aaatgcgtaa ggatatgcaa aacgaggcga
     1441 aaggcttcgc tgggttgaag tggtttatga atgatgcaca aaattcccaa gtgaagcaat
     1501 tagcgcaaat tgaaacctta cttcagcata aaatgcgtgt gttggcggtg aatattgtga
     1561 atgcaaatga gtcgaaaact attgtggaaa aagcgaaggc ttataatgtg ccggttgtct
     1621 tttttaaccg cacaccgagt aaacaagcgt tagaaagtta cgaaaaggcg tactttgtga
     1681 gcgctgatcc taaagaggcc ggtagaatcc aaggggaatt aattgcgaaa gtgtggaaat
     1741 caaaccccga tttcgatcta aataaagacg ggaaattgca atttgtattg cttaagggcg
     1801 agccgagtga tgtgagcgct gagcgttctc aagctgtggt tgaatcgctt aatcaacaag
     1861 gtgttcaggc agaagaaatt tacagtgaca cggcgagatg gcgtagaaca ttggctcgca
     1921 ataaaatgaa tgagtggctg gtggaaaacc gtgcagctga gattgaagtt gtgatttcaa
     1981 acaatgatga aatggcaatt ggtgctttag atgcgttaaa tgcacacgag aaaagattgc
     2041 cgatctttgg tattgatgcc ttgcctgaga cgttagcatt aatgaaaaaa ggggaaatag
     2101 ccggcacggt attaaatgat agctctgcac aagcgaaagc ggtggtgaaa ttggtatcta
     2161 atttggcaca aggtaagcct gcgctgaaag atacgcagtg ggaaagccat tcctctaaaa
     2221 cgatttatct tccacatatt ggtattgata aggaaaattt agggcaattt ttaccttaaa
     2281 tggaggagcg gggcgttata aatacgcccc ttattgatga taacaagcgg tcatttttca
     2341 gtaaaatctt gcaaatcctt tctcttttct tccaacagat ttgaatagag cgaatattca
     2401 aa
//
LOCUS       DANLZD010000214         2401 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.215, whole genome shotgun sequence.
ACCESSION   DANLZD010000214 DANLZD010000000
VERSION     DANLZD010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2401
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.215"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..186
                     /locus_tag="PXE26_002510"
     CDS             <1..186
                     /locus_tag="PXE26_002510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2523 domain-containing protein"
                     /protein_id="HDL5595039.1"
                     /translation="LLPVVIEMLVSRKLIPDLNALFGQLPESMWYFLNIFQIPMAISL
                     MISAMISRFVRRMPFIG"
     gene            196..735
                     /locus_tag="PXE26_002511"
     CDS             196..735
                     /locus_tag="PXE26_002511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005566788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595040.1"
                     /translation="MAVSAYIGIPGSGKSYEVVKSVILPAVASNRRVVSNIYGLNKEK
                     IHQYLLRKNKKLMIEELGEVIYVTNEQCLESDFLPSMDEQDSFCKAGDLIIIDEVWRI
                     WGNDKDIPKNHRSFIAEHRHFADPITGVTCDLVVINQDISQIPRFIKEGLRQLTECKN
                     TLVWGCVIVIGLMFFKERI"
     gene            666..1229
                     /locus_tag="PXE26_002512"
     CDS             666..1229
                     /locus_tag="PXE26_002512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595041.1"
                     /translation="MQKHVGLGLRNRYRVDVFQGKNLAKKNRTNSYQEKYDKKIFELY
                     KSYESDGAREAVTDSRQSIFSSFWVKVWIILLPLALFYCGYNLYIFLNGSESEVSHNT
                     EQAKFASDENHNDIVIHLLPTIGKPLSTKWRITGELKRDNKSFVILADNENRLRLEPS
                     SQFSFSGRMLQGEIDGGIVSYFSGESK"
     gene            1226..2359
                     /locus_tag="PXE26_002513"
     CDS             1226..2359
                     /locus_tag="PXE26_002513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspD"
                     /protein_id="HDL5595042.1"
                     /translation="MKIHQLGLLLMISSFSYAKNVDFKLEAVPLPKAISIIYDEVLQK
                     PYMLDPKLSNDSRVISFHTTEQQNFEQFIQRYFSNMNISVSEKKGVVYIGHIEPKQPK
                     VIKRSFVYSPIHRDVDYLASFLKDGTEGNQVFASGDKLVYYGTSEDIARVKSILKSID
                     TKSREVVVTGYVFEVQNIEKEGSGINLLAKLLSGKLGISVGYKQSYENFITVNAGNLD
                     AMFELFRTDQRFRVVSSPTLRVKSGSRGNFSVGSDVPVLSNVTYQDGRPIQSIEYRSS
                     GVIFDIQPTIKDKAIDLKIQQLSNFIKTDTGVNNSPTLVKRDLVTDVTVKSGDVIVLG
                     GLAENKISNGETSFSLLPKGWLSGKSNENTKTDIIVLLQVKEI"
BASE COUNT          818 a          324 c          491 g          768 t
ORIGIN      
        1 ctacttcctg tagtaataga gatgcttgtg tctagaaaat tgatacctga tttaaatgcg
       61 ttatttgggc aattgcctga aagtatgtgg tattttttaa atatttttca gataccaatg
      121 gctatttctt taatgatttc agcaatgatt tcacgttttg ttagacgtat gccatttatt
      181 ggatagagga gtgctatggc tgtttcagcg tatataggga ttcctggaag cggcaaatcg
      241 tatgaagtgg ttaagtcagt aattttacct gctgttgctt cgaatcgaag agttgtttcc
      301 aacatttatg gattaaataa agagaaaatt catcaatatt tactgcgtaa aaataaaaaa
      361 ttaatgattg aagagcttgg tgaagtcata tatgtaacga atgaacaatg cttggaatcg
      421 gattttttac catcaatgga cgaacaagat tcattttgca aagctgggga cttgataatt
      481 attgatgaag tttggcgtat ttggggaaac gacaaggata ttccaaaaaa tcatcgttca
      541 tttattgctg aacatcgaca ttttgcagat cctataacag gtgtaacttg tgatttagtc
      601 gtaataaatc aagatatttc tcaaattcca agatttatta aagaaggatt gagacaactt
      661 accgaatgca aaaacacgtt ggtttggggt tgcgtaatcg ttatcgggtt gatgtttttc
      721 aaggaaagaa tttagctaaa aagaaccgga caaattctta tcaagaaaaa tatgataaaa
      781 aaatatttga gctttataaa tcttatgaat ctgatggtgc aagagaagcg gttacagata
      841 gtaggcaatc tatattttca tctttttggg tcaaggtatg gattattctt ttaccattgg
      901 cattatttta ttgtggctat aacctttaca ttttcctaaa tggttcagag agtgaagtaa
      961 gccataatac tgaacaggct aaatttgctt ctgatgaaaa ccataacgat atagtaattc
     1021 atttacttcc tactattgga aaacctttat caactaaatg gcgaataaca ggggaactaa
     1081 aaagggataa taaatcattt gtgatcttag ctgacaatga aaaccgttta agacttgagc
     1141 ctagtagcca gtttagtttt agcggtcgaa tgttgcaagg agagatagat ggtggaatag
     1201 ttagttattt ttcgggagaa tctaaatgaa aatccatcaa ttagggctat tgctcatgat
     1261 tagctcattt tcttatgcta agaatgttga ttttaaatta gaagctgtgc cgttaccgaa
     1321 agcaatatca ataatatacg atgaagtgct acaaaagcca tatatgcttg atcctaaatt
     1381 atctaatgat tcaagggtta ttagctttca tacaacagag caacagaatt ttgagcagtt
     1441 tattcaacgg tatttcagca atatgaatat cagtgtatca gagaaaaaag gtgttgttta
     1501 tattggacat attgaaccaa aacagccgaa agtaataaaa cgtagttttg tgtattcgcc
     1561 tattcatcgt gatgttgatt atttggctag cttcctgaaa gatggaacag aaggaaacca
     1621 agtttttgca agtggcgaca agcttgtata ttatggtact tctgaagata ttgcacgagt
     1681 gaaaagtatc ttgaaatcaa tcgacacaaa aagccgtgaa gtagtggtaa ctggttatgt
     1741 ttttgaagtg cagaatattg aaaaagaggg tagtggcata aacttgttag cgaaattgct
     1801 atcaggaaaa ttaggcatta gtgttggtta caagcaaagt tatgaaaact ttatcaccgt
     1861 gaatgcagga aatttagatg caatgtttga attgtttcgc acagatcagc gttttagggt
     1921 tgtcagcagt ccgacattaa gagtaaaatc aggctcaaga ggtaattttt cagtaggctc
     1981 tgatgtccct gtattatcga atgtaaccta tcaggacgga aggcctattc agtcgattga
     2041 ataccgttca agcggtgtaa tatttgatat tcagccaacg ataaaagata aagcgattga
     2101 tttaaaaatt caacaactat caaatttcat caaaacagat accggtgtaa ataatagccc
     2161 aacgttggta aagcgtgatc tggtaacaga tgttacggtt aaaagcggtg atgttatcgt
     2221 tttaggtggg ttagctgaaa ataaaatatc taatggcgaa accagttttt cattgctacc
     2281 taaaggttgg ttaagtggaa aatcaaatga aaatactaaa acagatatta tagttctgct
     2341 acaagtaaag gaaatttaat atgtatgagg aaaatttaga ttataaattg tcattaaatg
     2401 a
//
LOCUS       DANLZD010000215         2327 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.216, whole genome shotgun sequence.
ACCESSION   DANLZD010000215 DANLZD010000000
VERSION     DANLZD010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2327)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2327)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2327
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.216"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            166..606
                     /locus_tag="PXE26_002514"
     CDS             166..606
                     /locus_tag="PXE26_002514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3577 domain-containing protein"
                     /protein_id="HDL5595043.1"
                     /translation="MTTQTSTQKNYFNLHTTGIGYLSNIRTVTPKKGDEFLACTIGAL
                     IGEAGEGAKAEYRYFDCKVVGEAAIDLVNRAKASVEADKKVLISFVLADLWTDTFTYQ
                     KDGKNHKKGDTGVMLKARLIRIKSVKIDGVVKYQEPEKIDAQSE"
     gene            713..1360
                     /locus_tag="PXE26_002515"
     CDS             713..1360
                     /locus_tag="PXE26_002515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3560 domain-containing protein"
                     /protein_id="HDL5595044.1"
                     /translation="MTINTYAKFAPTVFVAKCPEAHTKGEIITLTSKYGNETEVQIHN
                     LVKQDNEHYYYSFTRCDGMDSQSFAQQKAERYQGYADNATKRSQSWANAANEGLEFLR
                     LGEPIKIGHHSEKRHRNLIERNARRMDNALSEMNKTESYESRIAYWEKMAGKIDLSMP
                     ESLEYFKFELDKAKEKHKELKDNPEKREHGYSLTYAKKAVNELEKKVKLAELLWA"
     gene            1384..1791
                     /locus_tag="PXE26_002516"
     CDS             1384..1791
                     /locus_tag="PXE26_002516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein"
                     /protein_id="HDL5595045.1"
                     /translation="MNRQGVYINGKQVFDSKGKEINSIEIIGSTVQTVVGINKGSISM
                     VSSNNALIVDGQTIAFEPSPTIHIEVFGNITNLNSGAGNVNIKGDVSHIETVSGDVNV
                     DGTVTSDVRTVSGDIRCKTIAGKVETISGDIYR"
     gene            1869..2231
                     /locus_tag="PXE26_002517"
     CDS             1869..2231
                     /locus_tag="PXE26_002517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595046.1"
                     /translation="MKDILLDFDDTSCYLGDWEEILEEYNDRVRVEDFWHYAKEFETV
                     PHLGNLYQEHVILKLIARFCIELDIDQDSGLVEFDYYINAIDTHFYINSQRICDIDDW
                     NEMLDKIREEMTPAKLVA"
BASE COUNT          766 a          402 c          480 g          679 t
ORIGIN      
        1 agcattccga aagggaactc cacaatattg tgggaatgcc gattaaacct ctaccatttc
       61 ggtgaattta catcgaaatt tcatttaact tccaccttgc ggggaacatt tttcccgtgt
      121 tgggtaagga tgtttctccg cttttttact ttggagaaac agactatgac aactcagact
      181 tctactcaaa aaaattactt caatcttcac acaaccggaa tcggctatct gagcaatatc
      241 cgcacagtga ctccgaaaaa aggtgatgaa ttcttagctt gtactattgg tgctctcatt
      301 ggagaagcag gagaaggtgc aaaagcagaa tatcgctatt ttgattgcaa agttgtgggc
      361 gaagctgcga ttgatttggt caatcgggca aaagcctctg ttgaagctga taagaaagta
      421 ctcatctctt tcgttttagc tgacctttgg acagatactt tcacctatca aaaagatgga
      481 aagaatcaca aaaaaggtga tactggtgta atgctgaaag ctcgcttaat tcggattaag
      541 tctgtcaaaa ttgatggagt ggtaaaatac caagaaccag aaaaaataga cgcacaatct
      601 gagtaatttt acctaagccc gacattttat gttgggcttt actttatgtc ccgtagggaa
      661 atgctccctg cggtgtgttt cccttcattt ttacaatttt aggagaaaca ctatgactat
      721 taacacttat gcaaaatttg cacctactgt tttcgtagca aaatgccctg aagcacatac
      781 caaaggtgaa attatcactc taaccagcaa atatggtaat gaaaccgaag ttcaaataca
      841 taacttagtg aagcaggata atgagcatta ttactattct ttcactcgtt gtgatgggat
      901 ggatagtcag tcatttgctc aacaaaaagc agaacgctat caaggctatg cagataatgc
      961 aaccaaacgc agccaaagct gggcaaatgc agctaatgag gggctggagt ttttgagact
     1021 aggtgagcca ataaaaattg ggcatcatag tgaaaaacgc caccgtaacc tcattgaacg
     1081 taatgcccgt cgaatggata atgcgctttc agaaatgaac aaaacagaaa gctatgaatc
     1141 ccgtattgca tattgggaaa aaatggcagg gaaaattgac ctttctatgc cggaaagtct
     1201 ggaatacttt aagtttgaat tggataaagc caaagaaaag cataaagaat tgaaggacaa
     1261 ccctgagaaa cgagagcatg gttattcact gacttatgct aaaaaagcag ttaatgaact
     1321 tgagaaaaaa gtgaaattag ctgaattact ttgggcataa tttttacata gaggattatt
     1381 aatatgaatc gacaaggcgt ttatatcaat ggtaaacaag tctttgactc taaaggcaaa
     1441 gagattaata gcattgaaat cattggtagc acagtgcaaa cagtcgttgg gataaataaa
     1501 ggatctatct caatggtctc cagcaacaat gcattaattg ttgatgggca aacaattgca
     1561 tttgaacctt ctccgactat ccatattgaa gtatttggta atattaccaa tctcaattca
     1621 ggagcaggaa atgtgaatat caaaggtgat gtaagccata tagagactgt gagtggtgat
     1681 gtgaatgttg atggtactgt gacttcagat gtaagaacag taagcggtga tattcgctgt
     1741 aaaactattg caggtaaagt cgaaaccatc agcggagata tttatcgcta atttttgcta
     1801 cttaccctat cgggaaacat tcccgatagg tgtgtttccc cacttttatt taaattttgg
     1861 agaaacatat gaaagacatt cttttggatt ttgatgacac ctcttgttat ttaggtgatt
     1921 gggaagagat actagaagaa tacaatgatc gtgttcgagt tgaggatttt tggcattacg
     1981 ctaaagaatt tgaaaccgta cctcatttgg gcaacctata ccaggagcat gtcatcctga
     2041 agttgattgc tcgattctgt attgaactgg atattgatca agattcaggt ttagtcgaat
     2101 ttgattatta tatcaatgca atagatacgc atttctatat taatagccaa agaatctgtg
     2161 atatagatga ttggaatgaa atgttagata agattcgtga agaaatgacg ccggctaaat
     2221 tagttgccta atttttgcaa atttttacta aaaatgacgc ttactgtcgt cttaattcac
     2281 ccacttgggg aaatatctcc ccaatgggat gacatttccc ctctttc
//
LOCUS       DANLZD010000216         2252 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.217, whole genome shotgun sequence.
ACCESSION   DANLZD010000216 DANLZD010000000
VERSION     DANLZD010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2252
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.217"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            32..751
                     /locus_tag="PXE26_002518"
                     /pseudo
     CDS             32..751
                     /locus_tag="PXE26_002518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616566.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
     gene            811..1260
                     /locus_tag="PXE26_002519"
     CDS             811..1260
                     /locus_tag="PXE26_002519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudoazurin"
                     /protein_id="HDL5595047.1"
                     /translation="MLAKLKWNQLACVTLAFCSASVFSAHHEIKMLDNNAEGSMVFEP
                     GYVKAEVGDTVTFIPSHKGHWVESRSIPEGAEKFLSKEDEEFTITLTHEGVYVYYCPP
                     HRTMNMAGIIQVGQALNLEATQKEVEKIEKRTKENKGRLFEYLEQVK"
     gene            1361..1882
                     /locus_tag="PXE26_002520"
     CDS             1361..1882
                     /locus_tag="PXE26_002520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Type II secretory pathway, pseudopilin PulG"
                     /protein_id="HDL5595048.1"
                     /translation="MYKAITLIEILTTITIMVIAVYFISPVIFTLQDRIALHSEIENI
                     QSFIQQIQTKARYTKRNYTLTLSQRNNQWCMIAVIKPINTSKQIICDCLNKHFCDLGK
                     EYHLYTPTHQQIVLKNKSLYPKSFINVDGVSGQLESKCIKLSLNKENEILQFEQLGRV
                     YVAAKNKRSTCKD"
     gene            1914..>2252
                     /locus_tag="PXE26_002521"
     CDS             1914..>2252
                     /locus_tag="PXE26_002521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595049.1"
                     /translation="MASALGAFLLLLVASSYADFYYTQTKQKEQLYLQAEAHQLLNYF
                     QQHFQHIGYQGSHRTDSNFDLFQQAGKSLNIVHKNCIIGFYDLNQDGCLGKRKTKTAA
                     CKLGTVNNTRE"
BASE COUNT          761 a          384 c          450 g          657 t
ORIGIN      
        1 gttttagtcg ttatctagga cagcccctac ttttaatact cgtaagcccc cttttgataa
       61 ccctaaagtt cgtcaagcat tgaattatgc ggtgaataaa actgaaattt taacttccgt
      121 ttaccaaggc tctgcaacgc cagctaaaaa cccaatgcct tctacgattt ggggatataa
      181 caacgaagta gccggttatg aatttaatcc ggaaaaggcg aagagcttgc ttaaagaggc
      241 cggattagaa aatggctttg aaacagaaat ttgggcaatg cctgtttctc gcccttacaa
      301 tccaaatgcc cgtagaatgg ctgaaatgat tcaagaggat tggaaagcaa taggggtaga
      361 ggcaaagata gtgagctatg aatggggaga atatcttaaa cgaatgggaa acggcgagca
      421 cgctaccgga atgattggtt ggaccggaga taacggcgat ccagataatt tcctcaatgc
      481 cctactcagt tgtaatgcgg tagaacaagg ctcaaactat gcagggtttt gtaatccaga
      541 gtttgaccgt ttaattaatg aggctgcgac tatcagtgat caaaacaagc ggtcagattt
      601 atataaaaaa gcgcaattca tctttaatga gcaagcacct tggttaccga ttgcacattc
      661 aacggtgtat tttccggtaa ggaaagaggt aaaaggctat gttgtcagcc cgtttattgc
      721 tcataatttt tatggtgttg agctggaata acctaaggta taatgaattg aactcatttt
      781 gtgcctcata aatttaggag caataaatat atgttagcga aacttaagtg gaatcaatta
      841 gcttgtgtaa cattggcatt ttgttcagcc tcagtatttt cagcccatca cgaaatcaaa
      901 atgttagata acaatgcgga aggatcaatg gtatttgagc ccggttatgt aaaagcagag
      961 gtgggcgata cggtaacatt tattccgtct cataaagggc attgggttga aagccgctcg
     1021 attccggaag gtgcggagaa gttcttatct aaagaagatg aggaatttac tattaccctt
     1081 actcacgaag gtgtttatgt ttactactgt ccgccacacc gaaccatgaa tatggccgga
     1141 attatccaag taggacaagc tctcaatctt gaagccacac aaaaagaagt ggaaaaaatt
     1201 gaaaaacgca cgaaagaaaa taaaggacgt ttatttgaat atttagagca agttaagtag
     1261 aagtgattta attttgcgat ctgcatcgaa aaatcaatat ttaatagttt acaaatgatg
     1321 cttaaattct aagataccct ctatcaatga gggtattttt atgtataaag ccatcacatt
     1381 aattgaaata ctaaccacta tcactattat ggtgatcgct gtttatttta tctcgccggt
     1441 tatttttaca ctgcaagatc gaattgcact tcatagtgaa attgaaaata tccaatcttt
     1501 tattcagcaa atccaaacta aagcacgtta taccaaacgt aattatacct taaccctttc
     1561 tcagcggaat aatcagtggt gtatgattgc ggtaattaag ccaatcaata ctagcaaaca
     1621 aattatttgt gattgtttga ataaacattt ttgtgattta ggaaaagaat atcatcttta
     1681 tacgccgact catcagcaga ttgtattaaa aaataaaagt ttatatccga aatcctttat
     1741 taatgttgat ggggtaagtg gtcaattaga atcaaaatgt attaagctca gtttaaataa
     1801 agaaaatgaa attttgcaat ttgaacaatt aggacgggtt tatgtggcag caaaaaataa
     1861 acgtagcacc tgcaaagatt agtttatctg cttttagcct aattgaagta ttaatggcta
     1921 gtgcattagg ggcgttttta ttattgcttg ttgcttcaag ttatgccgat ttctattaca
     1981 cacaaaccaa acaaaaagaa cagctctact tgcaagcaga agctcaccag ttactaaact
     2041 acttccaaca gcattttcaa cacattggct atcaaggctc tcacagaaca gacagtaatt
     2101 ttgatttatt tcagcaagca gggaaaagcc tgaatattgt gcataaaaat tgcattattg
     2161 gattttacga tttaaaccaa gatggctgtt tgggaaaacg taagacaaaa acggccgctt
     2221 gtaagttagg aacagtgaat aataccagag ag
//
LOCUS       DANLZD010000217         2235 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.218, whole genome shotgun sequence.
ACCESSION   DANLZD010000217 DANLZD010000000
VERSION     DANLZD010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2235)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2235)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2235
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.218"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            76..1671
                     /locus_tag="PXE26_002522"
     CDS             76..1671
                     /locus_tag="PXE26_002522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HDL5595050.1"
                     /translation="MQRHEQLAQVQQTQKWDFIIIGGGASGLGIAVDAASRGYKTLLL
                     ESHDFAKGTSSRSTKLVHGGVRYLANGDVALVREALRERGRLAKNAAHLFKNQSFIIP
                     NYKFKDCVMYRVGLGLYDMLSGNLSLGKTENISKTEAKRRLPTLNDTGLRTGTVYQDG
                     QFDDSRLAVNMAQTVVEHGGTVLNHAKVTSLHKTPQGKIDGVTFYDELNQQEHTVFGT
                     AVINATGVFMNDILSMDHGSTKKFVVPSQGIHLVLDKSFLPSNDALMIPKTSDGRVLF
                     AVPWHEVLVVGTTDTLIENPSYEPIPLEQEVNFILETAAQYLTKKPTRDDVKAVFAGQ
                     RPLAAPEKEGQSTKEVSRSHKVLTDATSGLITITGGKWTTYRQMAEDTVEEALKVHSE
                     LGNKPCVTVNLPIHGNIPAAQVNLQDHLYVYGSDIPQLRALMTETPEYAQKIHPRLDY
                     TVAEVIWAVRHEMAQTVEDVLARRVRLLFTDARAAIDSAAKVAAIMAKELGKDEMWQQ
                     QQVIQFLDVAKHYLLVDYQPQPI"
     gene            complement(1758..2057)
                     /locus_tag="PXE26_002523"
     CDS             complement(1758..2057)
                     /locus_tag="PXE26_002523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595051.1"
                     /translation="MENIKMEELKLTEKELLVLKGNALRMRFKAETNKTKNEIMQPFK
                     QVKQTGLALVNSPAVKTIALDFLVKRLLSMKGISFSVLGLTAFFLLQQKHKRDDS"
     gene            complement(2044..>2235)
                     /locus_tag="PXE26_002524"
     CDS             complement(2044..>2235)
                     /locus_tag="PXE26_002524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HDL5595052.1"
                     /translation="PEQKVKVFFSIAIIMFIAVTICGMMILSALKKQRHFMQSTLTEL
                     KLDIAAFKSALTLKQNGEH"
BASE COUNT          717 a          420 c          451 g          647 t
ORIGIN      
        1 ttgaagtcat tttattttcg tttatgctaa ttaagtaatg attaaatgtt ttaattcgag
       61 caaaaggagc aaaaaatgca aagacatgaa cagctagctc aagtacaaca aacgcaaaaa
      121 tgggatttta ttattatcgg tggtggcgca agtggtttgg ggattgcggt agatgcagct
      181 tcccgtggct ataaaacctt attattagaa agccatgact ttgcgaaagg tacatcgagc
      241 cgaagcacaa aattagtcca cggtggcgtt cgctatcttg caaatggcga tgttgcactc
      301 gtgagagaag cattgcgtga acgaggtcgt ttagctaaaa atgcagctca tttatttaaa
      361 aaccaaagct ttattattcc aaactacaaa ttcaaagact gtgtaatgta tcgtgttggt
      421 ttaggcttat acgatatgct ttcaggcaac ctgagtttag gaaagactga aaacatcagt
      481 aaaactgaag cgaaaagacg tttaccaacc ttaaatgata ctggtttacg tacaggcact
      541 gtttatcaag atgggcaatt tgatgactca cgtcttgcag tgaatatggc acaaacggta
      601 gtagagcacg gcggtacagt actaaatcac gccaaagtga cttcactgca caaaacgcca
      661 caaggcaaaa ttgatggggt gactttctac gatgaactca atcaacaaga acatactgtt
      721 ttcggcactg cggtgattaa cgcaaccggc gtatttatga atgatatttt aagtatggat
      781 cacggtagca cgaaaaaatt tgtcgtacca agccaaggga ttcacttagt attagataaa
      841 tcattcttac caagtaatga tgcgttaatg attccaaaaa cctctgacgg acgagtgtta
      901 tttgctgtac cttggcacga agtgttagtc gtagggacaa cagatactct gattgaaaat
      961 ccttcttatg agccaattcc attggaacaa gaggtgaact ttattttaga gacagccgca
     1021 caatatctga caaaaaaacc aactcgtgat gatgtaaaag cagtctttgc cggtcaacgt
     1081 ccgcttgcgg caccggaaaa agaaggtcaa agcactaaag aagtatctcg tagtcacaaa
     1141 gttctcactg atgcaaccag cggtttgatt acgattacag gtggtaaatg gacaacttat
     1201 cgtcaaatgg cagaagatac cgtagaagaa gcgttaaaag tccactctga actaggcaat
     1261 aaaccttgtg tgaccgtcaa cttaccgatt cacggtaata ttccggcagc acaagtgaat
     1321 ctacaagatc atctatatgt atatggctca gatattccac agttacgcgc cttaatgact
     1381 gagaccccgg aatatgcaca aaaaatccat ccgagactag attataccgt tgcagaagtg
     1441 atctgggcag ttcgccacga aatggcacaa acggttgagg atgtattagc tcgccgtgtt
     1501 cgtttgctct tcactgatgc gagagcggcg attgatagtg cagcaaaagt ggctgctatt
     1561 atggcgaaag aattaggtaa agatgaaatg tggcaacaac agcaagttat ccagttcctt
     1621 gatgttgcga agcactattt attggtagat tatcagccac agccaatcta atacgctaaa
     1681 agcaagcggt taaaatcgat aaaaatattg caattacgtt atttgcaact ttttaaacca
     1741 ttttaaccgc ttgtatatta gctatcatct cttttatgtt tctgttgtaa taaaaagaat
     1801 gctgttaacc ccaatacaga aaagctaatt cctttcatac tcaataatct ttttaccaaa
     1861 aaatctaatg caatggtttt aactgccggt gaattgacca gtgcaagccc tgtttgtttc
     1921 acttgtttaa aaggctgcat aatctcattt ttggttttat tggtttccgc tttaaatcgc
     1981 attctaagtg cattaccttt tagaactaga agttcctttt cggttaattt aagctcttcc
     2041 attttaatgt tctccattct gtttcaaagt taaagcactc ttaaatgcgg caatatctaa
     2101 ttttagctcg gttaatgtac tttgcataaa atggcgttgt tttttcaagg cagaaagtat
     2161 catcattccg caaatagtca cagcaataaa cataataatg gcaatagaaa agaatacttt
     2221 aactttctgt tcggg
//
LOCUS       DANLZD010000218         2213 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.219, whole genome shotgun sequence.
ACCESSION   DANLZD010000218 DANLZD010000000
VERSION     DANLZD010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2213)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2213)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2213
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.219"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            19..447
                     /locus_tag="PXE26_002525"
     CDS             19..447
                     /locus_tag="PXE26_002525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL5595053.1"
                     /translation="MTHDWLYWALASALFAALTAIFAKVGLQGVDSDFATFIRTVVII
                     IALIAFLTYSGKWQPLDSLSSKNWLFLILSGLATGLSWSAYFKALQMGNASQVAPIDK
                     FSLVLVTLFAVIFLGERPSGQDWLGIGLVAGGVLLLAFKR"
     gene            453..1175
                     /locus_tag="PXE26_002526"
     CDS             453..1175
                     /locus_tag="PXE26_002526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HDL5595054.1"
                     /translation="MQNFANIEIAFIHRKAPLPSDFSYPEMPGGLTEKQVQKWQSRRV
                     AFFLLTELFKKHHLDLDLLADMQRSPSGRTFVDSEQIDFNISHSGEWIAVIFSYSFAK
                     LAVGIDIEHPQKIRRYHDLICHYGNAEEQNVLLANHSPILSNLAERFYLSWCLREAIL
                     KSQGVGIVKLSEVKHLPLEKQIFSAHCPKGKLHFVSELPFYLSYFYQQPQNMLLSEPL
                     LYHWQNGQFQPIKCQSLVYDVN"
     gene            1185..1604
                     /gene="psiE"
                     /locus_tag="PXE26_002527"
     CDS             1185..1604
                     /gene="psiE"
                     /locus_tag="PXE26_002527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HDL5595055.1"
                     /translation="MPKKSLEEHHSSFGKIASETFQWIMNIALLVTGALLSYSLFAEA
                     YSLYELSFSDSEKFQIVEKIVIFFLYFEFLALIVKYFKSNYHFPLRYFLYIGITAMVR
                     LIIVDHSNALHTLLFALSILVMIIALYIVHTDRLHKS"
     gene            1613..>2213
                     /locus_tag="PXE26_002528"
     CDS             1613..>2213
                     /locus_tag="PXE26_002528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HDL5595056.1"
                     /translation="MKLTQYQHNDLQILNRETVYKGHFELQKITFRHKLFSGEMSGEV
                     VRELLIKGEAAALIAYDPTLDKVVLIEQVRIGAYDAGQKKSPWLLELVAGMVDKGNEE
                     PAEVAMREAKEEAGLEVTTVQHALSVWDSPGGQLERLHLFLGLIDSTQVKSGEVHGLL
                     EEENEDILVHVVSREQAYQWVEDGTIDNVIAVIGLQWLQL"
BASE COUNT          628 a          448 c          473 g          664 t
ORIGIN      
        1 aaatattaaa attttgttat gacacacgat tggctctatt gggcattagc ctctgcactt
       61 tttgcagcat taaccgccat ttttgccaaa gttggcttac aaggcgtaga ttctgatttc
      121 gccactttta ttcgcacggt agttattatt attgcactta ttgcctttct cacttacagc
      181 ggaaaatggc agccgttaga tagcttgagc agcaaaaact ggctgttttt aatcttatcc
      241 ggcttggcaa caggattgtc ttggtcggcg tatttcaaag cattgcaaat gggtaatgct
      301 tcccaagtcg ctccaatcga taaattcagc ttggtgttag ttaccctttt tgcagtaatt
      361 ttcttaggcg aacgcccaag cggacaagat tggcttggca ttggcttagt tgctggtggc
      421 gtactgttac ttgccttcaa gcggtgattt ttatgcaaaa ttttgcaaat attgaaattg
      481 cgtttattca tcggaaagca cctctgccga gtgatttctc ctaccctgaa atgcccggcg
      541 gtttaactga aaaacaggtg caaaaatggc aaagccgccg agtcgccttt tttctgctga
      601 cggaattgtt taaaaaacac catctggatt tagatttatt agctgatatg caacgctccc
      661 caagcggtcg cacttttgtc gattctgagc aaattgactt taacatcagc cattcagggg
      721 aatggatagc ggtcattttt tcgtattctt ttgcaaaatt agcggtcggc attgatattg
      781 aacacccaca aaaaatcaga cgttaccacg atttaatctg ccattacgga aacgctgaag
      841 aacaaaatgt tttattagcc aaccactccc ccattctaag caacctcgcc gaacgctttt
      901 atttgagctg gtgcttgcga gaggcgatat tgaaatcgca aggggtgggg attgtgaaac
      961 tgtccgaagt aaaacattta ccgttagaaa aacagatctt ttccgcccat tgtccgaaag
     1021 gcaagctgca ttttgtgagc gaactgccgt tctatttaag ctacttctat caacaacctc
     1081 aaaatatgct attatctgaa cctttgctat accattggca aaacgggcag tttcagccta
     1141 taaagtgcca atcacttgtt tatgatgtta attaaggata acgaatgcct aaaaaatctt
     1201 tagaagaaca ccattccagt tttggcaaaa ttgcttccga aacctttcag tggattatga
     1261 atattgcctt gctagtaaca ggagcattgc tttcttactc gctgtttgct gaagcctatt
     1321 cactctatga actttccttt agcgacagtg agaaattcca aattgtagaa aaaatagtaa
     1381 ttttctttct ctattttgag tttcttgcgt tgattgtgaa atatttcaaa tcgaattatc
     1441 actttccgtt acgctatttc ctctatatcg ggattactgc catggtgcgt ttgattattg
     1501 tcgatcattc taatgcgttg catacactat tattcgcact ctctattttg gtgatgatta
     1561 tagcattata tattgtacac accgatcgtt tacataaaag ctaggaacta atatgaagct
     1621 aacccaatat cagcacaatg atttacagat tctaaaccga gaaaccgtct ataaagggca
     1681 ttttgagcta caaaaaatca ctttccgcca taagctgttt tccggtgaaa tgagcggtga
     1741 agtggtgcgt gaactcttaa ttaaaggcga agcggcggct ttaattgcct atgatccaac
     1801 cttagataag gtagtattaa ttgagcaagt gcggattgga gcttacgatg caggacagaa
     1861 aaaatcccct tggttgctgg aattggttgc cggtatggta gataaaggca acgaagagcc
     1921 ggcagaagtg gcaatgcgtg aagccaaaga agaagccggc ttggaagtca caacagtgca
     1981 acacgcctta agcgtatggg acagtcccgg tggacaactg gaacgcttgc acctgtttct
     2041 cggcttgatt gacagcaccc aagtgaaatc cggcgaggta cacggcttac tggaagaaga
     2101 aaatgaagac attttggttc acgttgtaag ccgtgaacag gcatatcaat gggtagaaga
     2161 cggcacaatt gacaatgtga ttgcggtaat tgggctacaa tggttgcaat taa
//
LOCUS       DANLZD010000219         2109 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.220, whole genome shotgun sequence.
ACCESSION   DANLZD010000219 DANLZD010000000
VERSION     DANLZD010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2109)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2109)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.220"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..1758
                     /locus_tag="PXE26_002529"
     CDS             <1..1758
                     /locus_tag="PXE26_002529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1983 domain-containing protein"
                     /protein_id="HDL5595057.1"
                     /translation="IDAVTASVGSNLAKITQVSNAVAGVDGKLSATHTIKTETIAGGR
                     KAIAGIALGAAADNRNAESSVIVMADKFEVVKNAQDGQPVRLFGVAQNKVAINGNLIA
                     TGTIKGSHIDADSVRAGILTAGAIRTEHLAAGQISADKLAIGLGGNLLVNPIFATPDL
                     SIAPFGWNYWRGEVGDRLNIDTRNIFNRNEQDNYGLKNGGLPNELVFSMRYSTTKETS
                     DTGRIGWLSQDINVVPNKKYIASVWLACHRGQAKLVIENIEKPGGAYLGRIGNSEVIT
                     GYSAHQGEFKNMKRVKVVFTAPTSGCIRFALRLDNIQGKANPFLFARRPMLEEASDNV
                     TDITQPSPWQNAGVTAIHGGSIVTNTVTAQQIAANTITANEIATGTIAARNMAANSIN
                     ASHIVGSSITADKLNVNNLAAISANLGKVTAGTITGTTITGNTISGGSINGTTISGTT
                     ISGGTIKGARLEGATGKFTGELEVSQLIGGGVIEQVTGKLKYSHRNRIYEGQEHGENS
                     SSPIYRHEYIYKATVTINAAPTRRYIEIIGSESFILEANQSITKTIEKSLNRNASGSS
                     LDFIVLAYSISTAKYISIS"
     gene            1881..>2109
                     /locus_tag="PXE26_002530"
     CDS             1881..>2109
                     /locus_tag="PXE26_002530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595058.1"
                     /translation="MTTFNKILNPMYSTIASYSTQDDGSLNAKYVVGTGDDTDGEVTN
                     FVIITSEYKYIDAQSAKAITDAPLTKEDIGKT"
BASE COUNT          679 a          400 c          472 g          558 t
ORIGIN      
        1 attgatgccg ttactgcttc tgttggctca aacttggcaa aaattactca agtgagtaat
       61 gctgtagccg gtgtggacgg caaattatct gctacccata ccatcaaaac cgaaaccatt
      121 gccggtggac gtaaagcgat tgccggtatc gcacttggtg ccgcggcaga caatcgcaat
      181 gcagaatcct ctgtcattgt aatggcagac aaatttgagg tagtaaaaaa tgctcaagac
      241 ggccaaccgg tacgattgtt tggtgtggct caaaataaag ttgcgattaa tgggaattta
      301 attgcaacag gtacaattaa aggtagccac attgatgcag actcagtaag agccggaata
      361 ttgacggcgg gagctatccg tacggaacac ctggcagcag ggcaaatatc ggcggataag
      421 ttagcgattg ggctaggtgg gaatttgctg gttaatccta tttttgcaac acccgatttg
      481 tcaatagctc cgtttggctg gaactactgg cgaggagaag ttggtgatcg gctaaatatt
      541 gacacccgta atattttcaa taggaatgaa caagataatt acggactaaa aaatggagga
      601 ctaccaaatg agttagtatt ttcgatgcgg tatagcacta caaaggaaac ctctgatact
      661 gggcgaattg ggtggttatc tcaggatatt aatgttgtgc ctaataaaaa atatattgcc
      721 tccgtatggt tagcttgtca tcgtgggcaa gctaaattag tcattgagaa tatcgaaaaa
      781 cctggtggtg cttacttagg tcggataggc aacagcgagg taattactgg ctatagtgct
      841 catcaaggcg aatttaaaaa tatgaaacgg gttaaggttg tatttactgc acctacttca
      901 ggctgtattc gtttcgcatt acgattagat aatattcaag gtaaagctaa tccattttta
      961 tttgctcgta ggccaatgct tgaggaggct agtgataatg ttacagatat cactcagcct
     1021 agcccttggc aaaatgccgg tgtaaccgct atccacggtg gatcaatagt tactaatacc
     1081 gttactgctc aacaaattgc agcaaatacc attaccgcca acgaaatcgc aaccggcacg
     1141 attgcagctc gaaatatggc agcaaactcg attaatgcaa gtcatattgt ggggagttcg
     1201 atcactgcgg ataagctaaa tgtaaacaat ttagcggcaa tatcggcaaa tcttggtaag
     1261 gtaactgctg gtacaattac aggtacgaca attactggta atacaattag tggcggaagt
     1321 attaatggta caacaattag cggtacaact atctctggcg gcacaataaa gggtgcaaga
     1381 ttggaggggg ctactggcaa atttaccggc gaacttgaag tatctcaatt aataggggga
     1441 ggtgttatag agcaggttac aggcaaatta aaatattcac atcgtaatcg catttatgag
     1501 gggcaagaac atggagaaaa ctcctcctct ccaatttata gacacgaata tatctataaa
     1561 gcaactgtca ccataaatgc agcgccgaca aggaggtata ttgaaatcat cggaagtgag
     1621 tcattcattt tagaagcaaa tcaatcaatc acaaaaacaa tagagaaatc attaaataga
     1681 aatgcaagtg gtagctcttt agattttatt gttttagcct attccatttc gacggctaaa
     1741 tatatctcta tcagttagtt atcgcctcaa tgtagtactg agtgcggata gccacagctt
     1801 ttttaaatat ccaaaaccaa ccgcttgcag gtcaattcag gcgattgttt ttatttcaac
     1861 tatcgataaa aggaaaaatt atgacaactt ttaacaaaat cttaaaccca atgtattcca
     1921 ccatcgcaag ctactcaacg caagatgacg gctcgctcaa tgctaaatat gtggtcggta
     1981 caggcgatga taccgatgga gaagtaacaa actttgtaat catcacaagt gagtacaaat
     2041 acattgatgc acagtccgcc aaggcgatta ctgatgcacc gctaacaaaa gaggatattg
     2101 gcaaaacgc
//
LOCUS       DANLZD010000220         2052 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.221, whole genome shotgun sequence.
ACCESSION   DANLZD010000220 DANLZD010000000
VERSION     DANLZD010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.221"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(37..666)
                     /locus_tag="PXE26_002531"
     CDS             complement(37..666)
                     /locus_tag="PXE26_002531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HDL5595059.1"
                     /translation="MDIFIQGFIVCFGLIVSIGAQNAFLLKQGILKQHIFWIALLCFL
                     GDVFLMTIGVLGLGTLIAELPVVSFIISLLGAIFLLSYGSRSFISVFKSGEYLVASGE
                     NATSLKKALLITFAITFLNPHVYIDTVVIVGSIGGKLDFNGKIYFLAGALLCSFIWFF
                     GIGYGASLLSPYFAKRRTWQILDAVTGLIMYFIAFSLLIYTYQLALQIF"
     gene            770..1417
                     /gene="udk"
                     /locus_tag="PXE26_002532"
     CDS             770..1417
                     /gene="udk"
                     /locus_tag="PXE26_002532"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HDL5595060.1"
                     /translation="MTDTSQTSSCVVIAIAGASASGKSLIASTIYKELKNELGTDNIG
                     IISEDAYYRDQSHLTMEERIKTNYDHPNSMDHHLLVEHLRQLKQGNAIEIPEYDYTEH
                     NRKTTTKHFEPKKIIILEGILLLTDENIRNEINVSIFVDAPLDICFIRRLQRDMVERG
                     RSMESVISQYRKTVRPMFLQFIEPSKQYADIIVPKGGKNRIAIDILKAQIKQLLK"
     gene            1432..2013
                     /gene="dcd"
                     /locus_tag="PXE26_002533"
     CDS             1432..2013
                     /gene="dcd"
                     /locus_tag="PXE26_002533"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HDL5595061.1"
                     /translation="MRLCDTDIKRYLDEGIIAITPRPSDDKISGATADVRLGNSFRVF
                     REHKTPYIDLSGPREEVAAQLNKVMSDEIIIGDDEAFFLHPGDLALATTLESVSLPAN
                     IVGWLDGRSSLARLGLMVHVTAHRIDPGWEGKIVLEFFNAGKLPLALRPNMAIGALSF
                     EILSGDAAKPYNARKDAKYKNQQSAISSRINQD"
BASE COUNT          712 a          398 c          353 g          589 t
ORIGIN      
        1 agcccgtcat tcatcaatga aaaaatttaa actccactag aaaatttgca gagcaagttg
       61 ataagtataa atcagtaaac taaaagcgat aaagtacata attagcccgg taacagcatc
      121 taaaatttgc caagttcttc gctttgcaaa ataaggggaa agtaagcttg ctccataacc
      181 tatgccaaaa aaccaaataa atgagcaaag taatgcacct gctaaaaagt atattttacc
      241 gttaaaatct aatttcccac cgatactgcc tacaatcaca accgtatcaa tataaacgtg
      301 aggatttaag aatgtaatcg caaaggtaat cagtaaagcc ttttttaagc tcgttgcatt
      361 ctctccactt gccacaaggt attcaccact tttaaatacg ctgataaatg aacggctacc
      421 gtagcttaat agaaaaatgg cccctaaaag cgaaataatg aaacttacaa caggcaattc
      481 cgcaattaac gtgcctaagc ctagcacacc tatcgtcatt aaaaatacat cacctaaaaa
      541 acagagcaat gcaatccaaa atatgtgttg ttttaaaatc ccttgcttta ataaaaaggc
      601 attttgtgcg ccaatagaga caattaagcc aaaacacact ataaatcctt gaatgaaaat
      661 atccattttt tctccaaaat cgcataacaa gcggtcaatt atacaaaaaa ttttgcaaaa
      721 cttcggtata atttatcgaa tactcttttg actgaatagg aaatttttta tgactgatac
      781 tagccagact tcatcttgcg ttgtcattgc gattgccggc gcatctgcct caggtaagag
      841 cctgattgcc tcaaccatct ataaagaact caaaaatgaa ttgggaacag ataatatcgg
      901 tattatttcc gaagatgctt attatagaga tcaatctcat ctaacaatgg aagaacggat
      961 taaaaccaat tacgatcacc ctaattcaat ggatcatcat ttattggttg aacatttacg
     1021 ccaattaaaa caaggtaatg cgattgaaat tccagaatat gactataccg aacataatcg
     1081 taaaacgacc acgaagcact ttgaaccaaa gaaaatcatt attttagaag gtattttatt
     1141 gctgacagat gagaatattc gcaatgaaat taatgtttct attttcgtag atgctcctct
     1201 ggacatctgc tttatccgcc gcttacaacg tgatatggtg gaacgtggac gttcgatgga
     1261 atcagtgatt agtcaatatc gcaaaaccgt tcgcccaatg ttcttacaat ttatcgaacc
     1321 ctctaaacaa tatgctgata ttattgtgcc aaaaggtggc aaaaaccgta ttgccattga
     1381 tattcttaaa gcacaaatta agcaattact aaaataaaat aggagctaaa tatgcgttta
     1441 tgtgatacag atattaaacg ttacttagat gaaggtatta ttgccataac gcctcgacct
     1501 tcagacgata aaatttctgg cgccactgca gatgtgcgtt taggtaattc gtttcgtgta
     1561 tttcgtgaac ataaaacgcc ctatattgat ttaagtggcc ctagagaaga agttgccgct
     1621 cagttaaata aagtgatgag tgatgaaatt atcatcggtg atgatgaagc atttttcctt
     1681 catcccggtg accttgcact cgcaacaacc cttgaatcgg tttccttacc agccaatatc
     1741 gttggatggt tagatggtcg ttcgtcactt gctagattag gcttaatggt acacgttacc
     1801 gcccacagaa tcgatccggg ttgggaaggc aaaattgtat tggaattttt taatgctgga
     1861 aaattacccc tagctttacg ccctaatatg gcaattggcg cattaagctt tgagatttta
     1921 agtggtgatg ctgcaaaacc ctataatgcg cgaaaagatg caaaatataa gaaccagcaa
     1981 agtgccattt caagtcggat taatcaagat taatatagta catgccttgc aatcatacat
     2041 taactatgtt ag
//
LOCUS       DANLZD010000221         2030 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.222, whole genome shotgun sequence.
ACCESSION   DANLZD010000221 DANLZD010000000
VERSION     DANLZD010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.222"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..451)
                     /locus_tag="PXE26_002534"
     CDS             complement(<1..451)
                     /locus_tag="PXE26_002534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-directed DNA polymerase"
                     /protein_id="HDL5595062.1"
                     /translation="MKMAKQEDLIMVLNPMLRGWANYHRSQVASKAFGRMDALVWKVL
                     WKWCERRHHNKGIMWIKEKYFCTTATRNWVFGTVYTNEKGETKPIDLFYCGYVKIKRH
                     VKIKSEYNPFLPEWELYGEKLSQERLYEEQSHRRQWQALYKDQRGKCA"
     gene            complement(448..1026)
                     /locus_tag="PXE26_002535"
     CDS             complement(448..1026)
                     /locus_tag="PXE26_002535"
                     /inference="COORDINATES: protein motif:HMM:NF012307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-directed DNA polymerase"
                     /protein_id="HDL5595063.1"
                     /translation="MYSHKGKKTNQPVEWVLDADIAGCFDHISHDWLLKHIPMNKRIL
                     RKWLKSGVVEFGRLKRTEEGTPQGGIISPTLANMALDGLEKLLETHFGGKGSRTIREN
                     KTYLVRYADDFIISGKTKELLENQVIPLIQNFLNERGLSLSTEKTKVVHIEEGFDFLG
                     WNVRRFKGKILNRPSQKNVKAFYNKVKEVISK"
     gene            complement(1027..1557)
                     /locus_tag="PXE26_002536"
     CDS             complement(1027..1557)
                     /locus_tag="PXE26_002536"
                     /inference="COORDINATES: protein motif:HMM:NF012307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase N-terminal
                     domain-containing protein"
                     /protein_id="HDL5595064.1"
                     /translation="MKERKHYTEKLACNPATSHISKWHYVDWHKAETYVKGMQIRIAK
                     ATLEGNWRKVKNLQRMLTHSHYAKLVAVRRVTENQGKRTSGVDKELWETPETKWQAAL
                     SLTEKGYKPSPLRRVYIPKPNGKKRPLGIPTMRDRAMQALYLLAIQPVAETTADKGSY
                     GFRLNRSTVDAITHIH"
     gene            1806..>2030
                     /locus_tag="PXE26_002537"
     CDS             1806..>2030
                     /locus_tag="PXE26_002537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011625997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5595065.1"
                     /translation="MFYSNNPLIKHKSGLLNLAEELGNISQACKVMGMSRDTFYRYQQ
                     AVEQGGVEALLNQNRRVPNLKNRVDEAIEQA"
BASE COUNT          548 a          443 c          344 g          695 t
ORIGIN      
        1 atgcacattt tccacgctgg tctttataca gtgcctgcca ttgtcgtctg tgtgattgtt
       61 cttcatacag acgttcttgg ctcagttttt cgccgtacaa ctcccattca ggcaaaaacg
      121 gattatattc agacttaatt ttaacgtgtc gtttgatttt aacatagcca caatagaata
      181 agtctatcgg cttagtttct cctttttcat tggtataaac tgtgccaaat acccaatttc
      241 gagtcgctgt ggtacaaaag tatttctctt ttatccacat aataccttta ttgtgatgac
      301 ggcgttcaca ccatttccaa agtactttcc aaactaatgc gtccattcgt ccgaatgcct
      361 tacttgcaac ttggcttcga tgataatttg cccaacctcg taacattggg tttagcacca
      421 ttataagatc ttcctgttta gccattttca tttagaaatt acctctttta ccttgttgta
      481 gaacgctttc acattctttt gacttggtct gttcagtatt tttcctttga aacgtctcac
      541 attccaacct agaaaatcaa aaccttcttc aatatgtacc actttcgtct tttctgttga
      601 taaggataaa cctcgttcat tcagaaagtt ctggataagt gggataactt gattttcaag
      661 taactctttc gttttacctg atatgataaa gtcatctgca taacgtacta agtaagtttt
      721 attttctcga attgtccgac tgccttttcc tccaaaatga gtttctaaca gtttttccaa
      781 tccatctaat gccatatttg caagcgttgg cgagataatc ccaccctgtg gtgtaccttc
      841 ctctgttcgt ttcaaccgtc caaattccac tacacctgat tttagccatt tccgcaatat
      901 ccgtttattc attggaatat gctttaatag ccagtcgtgg cttatgtggt caaaacaacc
      961 tgcaatatcc gcatcaagta cccactcaac aggttgatta gttttcttgc ctttatgcga
     1021 ataaatttag tgtatatgag taatagcatc taccgttgaa cggtttaatc taaatccata
     1081 agaaccttta tccgcagttg tttctgccac aggttgtatt gccaataaat aaagggcttg
     1141 cattgctcta tctcgcattg ttggaatacc caacggacgt ttctttccat tcggtttggg
     1201 gatatacact cgtcttaatg gactaggttt ataccctttt tccgtcaatg atagtgcggc
     1261 ttgccatttt gtctctgggg tctcccaaag ctctttatcg acaccacttg ttcgcttacc
     1321 ttgattttca gtcactcttc ttactgcaac taatttagca taatgtgagt gggttagcat
     1381 tcgttgtaag tttttaacct tacgccaatt gccttccagt gttgccttcg caatccgaat
     1441 ttgcattcct ttcacatacg tttcagcttt atgccaatcg acataatgcc atttggagat
     1501 gtgcgaggtc gctggattgc aagctaactt ttcagtataa tgcttacgct ctttcatacc
     1561 tacctctgat attacaagat aagtcgaaag tctcagcaag tgggtagatc cttcaagtaa
     1621 acaaatccct attgagataa actatcctta gtttattccc tttggttaca agaggatctt
     1681 accgttttac cgataatttc aactgtagaa gatcagactt gatctgacaa ttcactctaa
     1741 aaagtgagag tttcccgttt agaatatgag tgtcaaaaat caatctaaac aaaaaggaaa
     1801 ctcccatgtt ttattctaac aaccctctca ttaaacacaa gagcggttta ttaaatttag
     1861 cagaagaact gggcaatatt tctcaagcct gcaaagtaat gggaatgagc cgagatacat
     1921 tctatcgtta tcaacaagcg gttgagcaag gtggtgttga agcattgctg aatcaaaata
     1981 gacgcgttcc caacttaaaa aatcgtgttg atgaggcaat agagcaagct
//
LOCUS       DANLZD010000222         2021 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.223, whole genome shotgun sequence.
ACCESSION   DANLZD010000222 DANLZD010000000
VERSION     DANLZD010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.223"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(142..360)
                     /gene="ilvM"
                     /locus_tag="PXE26_002538"
     CDS             complement(142..360)
                     /gene="ilvM"
                     /locus_tag="PXE26_002538"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 small subunit"
                     /protein_id="HDL5595066.1"
                     /translation="MEEYQLTLKANKRPETLERILRVIRHRGFEVKCLNVESTDSAFN
                     LNFTLASKRPLSLLSHQLEKLFDIIEIN"
     gene            complement(370..2004)
                     /locus_tag="PXE26_002539"
     CDS             complement(370..2004)
                     /locus_tag="PXE26_002539"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 catalytic subunit"
                     /protein_id="HDL5595067.1"
                     /translation="MTESLKAHGVTTLFGYPGGAIMPTYDAIYDSGLDHLLCRNEQGA
                     AMAAIGYARATGKVGVCIATSGPGATNLITGLGDAALDSIPVVAITGQVASHLIGTDA
                     FQEADVLGLSLACTKHSFIVQNIEELPEILALAFQIAQSGRPGPVLVDIPRDVQLAQT
                     SALPIVYPKEPADAQDPNKLVVAKQLLATAKRPVLYVGGGVSMADGVQAVRNFVKIAN
                     IPSVSTLKGLGTIDPTDPLYMGMIGMHGTKAANYAVQECDLLIACGARFDDRVTGKLD
                     TFAPHAKVIHIDIDNAEINKLRQAQVALKGNLIEAVNYLAQPLDIEPWREDVRNLKQQ
                     FDFQYQENSGDGNIDAVALLHTLSQRKAKNSIVTTDVGQHQMWSAQHLTYHDPKNYIT
                     SAGFGSMGFGLPAAIGAIKARAEDQVILITGDGSIMMNIQELGTLKRADLAVKILLLD
                     NQRLGMVRQWQSLFFHGRHSQTILDDNPDFVLLAKAFDIDGERIEKASEVSDAIDRMF
                     NAKGAYLLHVCIPQEDNVWPLVPPGACNADMLDDEV"
BASE COUNT          584 a          442 c          427 g          568 t
ORIGIN      
        1 ttgaatggga aaataaagag caataagtga aaaaaaagag ttgaaatttg aagaaatgaa
       61 taaaatcaaa aggatagcga atgataaatt ttaagcataa aaaagccgtg tattttttta
      121 cacggcgaat gaaaagtctg attaattgat ttcaatgata tcaaacagtt tttctaattg
      181 atggcttaaa agagagagtg gacgtttact tgctaatgta aaatttaggt taaaggcgct
      241 gtctgttgat tctacattta agcatttcac ctcaaaacca cggtgacgta taacccgtaa
      301 aatacgctct aaggtttcag ggcgtttgtt agctttaagc gttaattgat attcttccat
      361 cttattctcc tatacctcat cgtctaacat atcggcatta cacgcccccg gcggtaccag
      421 tggccaaacg ttatcttcct gtggaataca aacgtgaagt aagtaagccc ctttggcatt
      481 gaacattctg tctattgcat ctgacacttc gctcgctttc tcaattcgct caccgtcaat
      541 atcaaaggct ttcgccaaca acacaaaatc agggttatca tctaaaatgg tttggctgtg
      601 tcgcccgtgg aagaacagcg attgccattg gcgaaccata cctaaacgtt ggttatccag
      661 taataggatt ttgaccgcta aatcagctct tttaagcgtg ccgagttctt gaatattcat
      721 cataatcgag ccatcaccgg taattaaaat aacctgatct tccgctcgag ctttgattgc
      781 cccaatcgcc gcaggcaagc caaaacccat agagccaaaa ccggcagagg tgatatagtt
      841 tttcggatcg tgataagtta aatgttgtgc cgaccacatt tgatgctgcc ctacatcggt
      901 agtgacgatg ctgtttttgg ctttccgctg tgaaagcgtg tgtaataacg ccacggcatc
      961 aatattgcca tcaccactat tttcttgata ttgaaagtca aattgctgct ttaaattacg
     1021 cacatcttca cgccatggtt caatatctaa cggttgagcc aagtaattca cggcttcaat
     1081 caaattccct tttaaggcaa cttgtgcttg acggagcttg ttgatttccg cattgtcgat
     1141 atcaatgtga atcactttag cgtgaggggc aaaagtgtct aatttgccgg taacacggtc
     1201 atcaaagcgg gcaccacagg caatgagtaa atcacactct tgtaccgcgt aatttgctgc
     1261 ttttgtgccg tgcataccga tcattcccat atagagcgga tcggttggat cgatagtgcc
     1321 taaccctttt aaggtagaaa cagacggaat atttgcaatt tttacaaaat ttctgaccgc
     1381 ttgtacacca tcagccatac taacgccacc gccgacataa agtaccgggc gtttggcggt
     1441 ggctaataat tgtttggcaa ccactaattt gttgggatct tgtgcatcgg caggttcttt
     1501 aggataaacg ataggcagag ccgaagtttg agctagttgc acatcacgtg gaatatcgac
     1561 cagcaccgga ccaggtctgc cactttgtgc aatttggaat gcgagggcta aaatttcagg
     1621 gagctcctca atattctgaa caataaaact gtgtttagtg caagcgagtg acaaacctag
     1681 tacatcagct tcttggaagg catcagtgcc gattaaatgg ctggcaactt gtccggtaat
     1741 tgctaccaca ggaatagaat caagtgcggc atcgcctaaa ccggtgatta aattagttgc
     1801 cccagggccg gaggtcgcaa tacaaacccc tactttacct gttgcacggg cataaccgat
     1861 agctgccatt gcagcacctt gttcattgcg gcaaagtaaa tgatctaagc ctgaatcata
     1921 aattgcatca taggtaggca taatagcccc gcccggatag ccaaaaagtg tcgttacccc
     1981 gtgagctttt aaactctcgg tgataaatct tgctccattc a
//
LOCUS       DANLZD010000223         2003 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.224, whole genome shotgun sequence.
ACCESSION   DANLZD010000223 DANLZD010000000
VERSION     DANLZD010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.224"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(31..1746)
                     /gene="proS"
                     /locus_tag="PXE26_002540"
     CDS             complement(31..1746)
                     /gene="proS"
                     /locus_tag="PXE26_002540"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HDL5595068.1"
                     /translation="MRTSQYLFSTLKEMPNDAQVVSHQLMLRAGMIRPMASGLYNWLP
                     TGIKVLKKVENIIREEMNKGGAIEVLMPVVQPAELWVESGRWNDYGPELLRFKDRGER
                     DFVLGPTHEEVITDLVRREVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDA
                     YSFHTTQESLQETYDVMYQVYSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGE
                     DDVVFSTESDFAANIELAEAVAVGERQAPTAEMQLVDTPNAKTINELVENHGLAIEKT
                     VKTLVVKGATEEQPLIALVIRGDHELNEIKAQKHPLVADPLEFADEAEIKAKIGAGVG
                     SLGVVNMPIPVIIDRSVALMSDFGCGANIDGKHYFNVNWERDVAVPEIADLRNVVEGD
                     PSPDGKGTLQIKRGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVV
                     AAAIEQHYDDRGIIWPCDEMAPFTVAIVPMNMHKSEKVQAFAEELYANLKAQGVEVIF
                     DDRKERPGVMFADMELIGVPHMVVIGEKNLENGEIEYKNRRSGEKQMIAKESLLAFLK
                     ANVKA"
BASE COUNT          519 a          511 c          364 g          609 t
ORIGIN      
        1 attttatacg cccaattttg ttatttataa ttaagccttt acattcgctt ttaagaacgc
       61 aagtaagctc tctttggcga tcatctgttt ttcaccgctg cggcggtttt tgtattcgat
      121 ttcgccgttc tcgaggtttt tctcaccaat aaccaccata tgcggcacac cgataagctc
      181 catatccgcg aacatcacgc ccgggcgttc tttacgatca tcaaaaatca cctcaacgcc
      241 ttgagctttt aagttagcgt ataactcttc agcgaatgcc tgcacttttt ccgatttgtg
      301 catattcatc ggcacaatcg ccaccgtaaa tggcgccatt tcatcacaag gccagataat
      361 accacgatca tcataatgtt gttcaatcgc agctgccacc acacgggtaa cgccgatacc
      421 gtaacaaccc attgtcatca ctagcggttt accgtcttca ccttgcacag tggctttcat
      481 tgcttctgag tattttttgc ctaattggaa aatatgccct acttcaatac ctcgtttgat
      541 ttgaagtgtg cctttaccgt ccgggcttgg gtcgccttcc accacattgc gtaaatctgc
      601 aatttccggc acagcaacat cacgctccca gttcacgtta aagtagtgtt tgccatcaat
      661 attcgcaccg cagccaaaat ctgacatcaa cgccactgag cggtcaataa tcaccggaat
      721 cggcatattc accacaccta acgagccaac accggcaccg attttggctt taatttccgc
      781 ttcatcggca aactcaagcg gatcagccac caacgggtgt ttttgagctt taatttcgtt
      841 taactcgtgg tcgccacgaa tcactaacgc aattaacggt tgctcttcag ttgccccttt
      901 caccactaag gttttcaccg ttttttcaat ggctaaaccg tgattttcta ctaattcatt
      961 gatggttttc gcatttggcg tatccactaa ttgcatttct gccgttggtg cttggcgttc
     1021 acccaccgca accgcttcgg ctaattcaat attggcagca aaatctgatt cggttgaaaa
     1081 taccacatca tcttcaccgc ttgaggctaa cacttggaac tcgtgagagg ctgaaccgcc
     1141 gatagagccg gtatctgcct gcaccgcacg gaaatctaag cccaaacggg tgaaaatatt
     1201 gctgtaaacc tgatacatca catcataggt ttcttgcagg ctctcttgtg tggtgtggaa
     1261 agaataggca tctttcatca caaattcacg cgaacgcatt accccgaaac gagggcggac
     1321 ttcatcacgg aatttcgttt gaatttggta taaattcagc ggaagttgtt tgtacgaaga
     1381 aacttcacgg cgaaccaagt cggtaatcac ttcttcgtga gtcgggccaa gcacgaaatc
     1441 acgctcgcca cgatctttaa aacgtaataa ttccgggccg taatcattcc aacgaccgga
     1501 ttccacccat aattccgccg gctgaaccac cggcattaat acctcgatag ccccgccttt
     1561 gttcatctct tcacgaataa tattttccac ttttttcaac actttgatcc cggtcggcaa
     1621 ccagttgtat aaacctgacg ccatcgggcg aatcattccg gcacgcaaca ttaattgatg
     1681 gctaactact tgtgcatcat tcggcatttc tttaagggtt gaaaataaat attgacttgt
     1741 acgcattgct attcctattc tttttaaact ttgaaacctg aaaaaatctg cttattttaa
     1801 aacaaagcgg ttaaattttc aggaaatttt gcaaaatcct ataaaaaaat aaccgcttgt
     1861 aagcggttat tttgttttaa ctaagggtat tttcttaaac tgtgtatgct taattttctc
     1921 gttcaatttg ctcaataatc tcttgccatt cggcatttgc ttgttcaaga gtaaaaatct
     1981 gacctttttt tactttagcc tct
//
LOCUS       DANLZD010000224         1983 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.225, whole genome shotgun sequence.
ACCESSION   DANLZD010000224 DANLZD010000000
VERSION     DANLZD010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1983)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1983)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1983
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.225"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..493
                     /locus_tag="PXE26_002541"
     CDS             <1..493
                     /locus_tag="PXE26_002541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5595069.1"
                     /translation="ARPLNTLEVKGLTVVDDSQKPLFSEVNQALYHGLSPIEVVASRV
                     QITRAITTYTKNVTNTDDPSYLDLTTIRTLDYVRKAIQTRQRLRFPRAKNSHRIVAKV
                     RSEILDVLYQLEGEEVIENVEAWKNRLLVVRNQDPTYLDLEIPADVVNGLHVIRNKIT
                     LIL"
     gene            504..878
                     /locus_tag="PXE26_002542"
     CDS             504..878
                     /locus_tag="PXE26_002542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5595070.1"
                     /translation="MSIVYEGSCVLEVDGVEIEITKLDVKTVTGRKLVKTMNSSGRAR
                     GYSQGIAEYTLSVTAVEPQDGSVIDWDNIKNAKLTKYPLDNSEKRTSYLGCFTTDVSE
                     SYTVDGESVRDIQLNALRKVNE"
     gene            878..1246
                     /locus_tag="PXE26_002543"
     CDS             878..1246
                     /locus_tag="PXE26_002543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595071.1"
                     /translation="MKITLNLGIEYNGKIRRDCTVRLLTMGGQCTAQEMIADLGFEEN
                     SEALSKREQTLVDMAYLSQQVTFDGIYQGNVTAQFLFDNLATEDYWQLIEATLTLRKK
                     RLENGVSQSESESPANPDLA"
     gene            1276..1464
                     /locus_tag="PXE26_002544"
     CDS             1276..1464
                     /locus_tag="PXE26_002544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595072.1"
                     /translation="MILLSKFAITAEQVWQMPLLEVFAWIESYLESEGVKTPHSPMGA
                     NSEVKRESYVFTRCGKIE"
     gene            1517..>1983
                     /locus_tag="PXE26_002545"
     CDS             1517..>1983
                     /locus_tag="PXE26_002545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5595073.1"
                     /translation="MAKNMKVQLELTAKDTASPVLNQAAKTAEKAFKNTERAAQKSGN
                     AQTQAAQKAANATESSNRKIEQSYRNARRVAADVSRARETLGVRAENAIQREIEQTRA
                     AYDRLKRSGVASQNELRRASEATKQRVRELNAELGKTSFGDKAGSFGRGLMGAG"
BASE COUNT          599 a          392 c          509 g          483 t
ORIGIN      
        1 ggctcgcccg ttaaataccc ttgaagttaa aggcttaacg gtcgtagatg actcgcagaa
       61 accgttattt agcgaagtaa accaagcgtt atatcacggt ttaagcccga ttgaggtggt
      121 ggcaagccgt gtgcagatta cccgtgcgat tactacatac accaaaaacg tgacgaatac
      181 tgatgaccca agctatttgg atttaaccac cattcgtacg cttgactatg tgcgtaaggc
      241 aatccaaacc cgtcagcgtt tgcgtttccc tcgtgcgaaa aactcccacc gtattgtggc
      301 aaaagtacgc tcggagattt tagatgtgct ttatcagctt gagggcgaag aggtaatcga
      361 aaatgtggaa gcgtggaaaa atcgcttatt agtggtgcgt aatcaagacc cgacttactt
      421 ggatttagaa atccctgcgg atgtggttaa tggcttgcac gttattcgta acaaaattac
      481 gttaatttta tagggggtgc tagatgtcaa ttgtttatga aggctcttgc gtgcttgagg
      541 tagatggcgt tgagattgaa attaccaaac ttgatgtaaa aaccgtaacc ggtcgcaagc
      601 tggttaaaac gatgaacagt tccggacgtg caagaggtta ttcgcaaggc attgcggaat
      661 atactctctc ggtgactgca gttgagcctc aagacggttc ggtaattgat tgggataaca
      721 ttaaaaatgc gaagctcact aaatacccgt tagacaatag cgaaaaacgc acctcttatt
      781 taggctgttt tactaccgat gtgagcgagt cttacaccgt tgatggtgag tcggtgcgtg
      841 atattcaact caacgcattg cgtaaggtga atgaataatg aaaatcactt taaatcttgg
      901 cattgaatat aacgggaaaa ttcgccgtga ttgtacggtg cgattgctga cgatgggcgg
      961 tcaatgcacg gctcaagaaa tgattgcgga tttagggttt gaggaaaact cggaagccct
     1021 atcaaagcgt gaacaaacct tggtcgatat ggcttacctt tcgcagcaag ttacctttga
     1081 tggtatttat caaggtaatg tgacggctca atttttattt gacaatttag ctaccgaaga
     1141 ctactggcag ttgattgagg caacgctcac actccgaaaa aagcggttag aaaatggggt
     1201 gagccaaagc gagagcgaaa gcccggcaaa tcccgatttg gcgtagcaga agcctttaag
     1261 cagtaccgac aagcggtgat tttactctca aaatttgcaa ttaccgccga gcaggtatgg
     1321 caaatgccgt tgcttgaggt atttgcgtgg attgagagct acttggagag tgagggcgta
     1381 aaaacaccgc atagcccaat gggtgcgaat agcgaagtga aacgcgaaag ctatgtcttt
     1441 actcggtgtg gcaaaattga ataggggcga aagccccttt tttgtacttt aaaatgagtt
     1501 taaagagact ttaaaaatgg caaaaaatat gaaagtgcaa ctggaattga cggcaaaaga
     1561 tactgcctcc ccagttttaa accaagccgc taaaaccgcc gaaaaagcct ttaaaaatac
     1621 agagcgagcg gcacaaaaaa gtggcaatgc tcaaacgcaa gcagcacaga aagcagcgaa
     1681 tgctacagaa agctcaaatc ggaaaataga acagagttac cgtaatgccc gccgagtggc
     1741 tgccgatgtg agccgagccc gtgaaacatt aggtgttcgg gcggaaaatg caatccaacg
     1801 tgaaattgaa caaactcgtg cagcctatga ccgcttaaaa cgctcaggtg ttgcctcgca
     1861 aaatgagcta cgccgtgcct cagaagcgac taagcaacga gtccgagagt taaatgctga
     1921 attgggtaaa accagttttg gggataaggc aggaagtttt gggcgtgggt tgatgggtgc
     1981 agg
//
LOCUS       DANLZD010000225         1965 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.226, whole genome shotgun sequence.
ACCESSION   DANLZD010000225 DANLZD010000000
VERSION     DANLZD010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1965)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1965)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1965
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.226"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            116..697
                     /locus_tag="PXE26_002546"
                     /pseudo
     CDS             116..697
                     /locus_tag="PXE26_002546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252416.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
     gene            698..868
                     /locus_tag="PXE26_002547"
     CDS             698..868
                     /locus_tag="PXE26_002547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HDL5595074.1"
                     /translation="MLKCKQITELVSLSQEQKLTLKQRVNVQVHLMLCSRCRAFSQNC
                     KTVDKLMKEFNS"
     gene            complement(917..1885)
                     /locus_tag="PXE26_002548"
     CDS             complement(917..1885)
                     /locus_tag="PXE26_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS1 family transporter"
                     /protein_id="HDL5595075.1"
                     /translation="MCLKLLFGFDNLPVVYVLFTVIQVGLSINGFKGIKWLENVSCVF
                     LIGILAYMLYVVNTKFSVEIGERFANIEGTWGMPFWAATTAFLGIYSTMILNASDYSR
                     HVKKGTTPTATGVIYVLSILPVTLFMGLIGLLVTAATGNSDPIEVFATAMDNKFLTVI
                     TLLFIAFAQVTTNVLNNIVPPSYILMDSFKMKWSHATILVGILSICVMPWKLVTAESA
                     DGLSLFIKIYSAFLGPIFAVMVVDYYILRKRTLNVNDLYNKEGIFKGINWAAIIAIAI
                     GSFCSLIVVDLSWYVSLIPSGLSYYILMRVLKSSEAFRKGTVLEHQ"
BASE COUNT          681 a          362 c          352 g          570 t
ORIGIN      
        1 ttagtatgtt aggtttaaaa atacttcata ccaatatccc ctaagttggg taaaacctta
       61 tgaaatagga tacaagcggt tagtttctct caatttttta ccaaaggatc acgcaatgag
      121 ccaaccggct ttacggcaaa tttccccctc gcagctagaa gatattcgtc tgcaaatggt
      181 gaagtttgcc tttttacagt taaaaaataa cgaacttgcc gaagatgtgg tgcaagaggc
      241 gtttgtcagc gcttataaat atgccgacag cttcaaaggt gaaagtgcgt taaaaacgta
      301 gatttttgca attttaaaaa acaagatcgt agatttagtg aaagccaaag gcaaattggt
      361 ggcagtatct gagctgatgg aagaagacga tcacgatctt gccgataaat tgtttaacga
      421 aaatggcggt tgggataaag atgcttatca atctaatgag tggaagaaca ccgaaagcca
      481 tacctattcc gctcaattct ggcaagtatt tgaattttgc ctaaataatc tgccggcaaa
      541 tcaagcaagg gtgtttatga tgcgttccca tttggaaatg gaaaccgaag aaatttgcgc
      601 agaatgtgag atttcaccag caaatgtgca taccttactg tatcgggcaa gattgcagtt
      661 acaggtctgt ttaagtcaaa aatggtttgg aggttaaatg ttaaaatgta agcaaattac
      721 cgaattagtt tctctgtccc aagaacaaaa actgacatta aaacaacgtg ttaatgtgca
      781 agttcattta atgctttgtt ctcgttgcag agcctttagc caaaactgca aaaccgtaga
      841 taagctaatg aaagaattta actcttagcg taaaagcaag cggtaaaatt tttaataaat
      901 tttaccgctt gtcatcttat tgatgttcta gcactgtccc tttacggaaa gcttcggaac
      961 tttttaacac cctcatcaaa atatagtagc tcaagcctga tggaattaaa ctgacatacc
     1021 aagagagatc caccacaatc agtgagcaaa acgaaccgat agcaatcgca ataattgctg
     1081 cccagttaat ccctttgaaa ataccttctt tattatataa gtcatttacg tttaaagtac
     1141 gttttcttaa gatgtagtaa tcgacgacca ttaccgcaaa aatagggcct aagaatgccg
     1201 agtaaatttt aataaacaaa gataatccat ctgctgattc agcagttacc aatttccaag
     1261 gcattacaca tatagaaaga atgcccacta aaatggtggc atgcgaccat ttcattttaa
     1321 atgaatccat taaaatgtaa gatggcggaa caatattatt caacacgttt gtcgtaacct
     1381 gtgcaaaagc aatgaataat aacgttatta ctgttaaaaa tttattatcc attgcagttg
     1441 caaatacttc aattgggtca ctattgcctg tagctgccgt aactaacaac cctattaaac
     1501 ccataaataa ggttacaggg aggattgata atacataaat cacacctgtt gctgttgggg
     1561 ttgttccttt tttaacgtgg cgagaataat cggaagcatt taaaatcatt gttgaataaa
     1621 tacccaagaa tgctgtagtt gcagcccaga atggcattcc ccaagtgcct tcaatattgg
     1681 caaagcgctc gcctatttct acagagaatt ttgtattcac aacataaagc atataagcaa
     1741 gaataccgat gaggaacaca caagaaacat tttccaacca tttaatacct ttaaaaccat
     1801 taatggataa gccaacttga ataacagtga atagcacata aacaacaggc aagttatcaa
     1861 aaccgaacaa cagttttaaa cacatattga cagctatttt ttgcgtttta tcatttaatt
     1921 caaaaattaa attaaatcta tttgctattt tcagcgattt tcggc
//
LOCUS       DANLZD010000226         1903 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.227, whole genome shotgun sequence.
ACCESSION   DANLZD010000226 DANLZD010000000
VERSION     DANLZD010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1903
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.227"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            30..341
                     /locus_tag="PXE26_002549"
     CDS             30..341
                     /locus_tag="PXE26_002549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5595076.1"
                     /translation="MVIIMLSKTKSPTLFPKYQNALLQLGENIRLASKRRMFTQTLLA
                     QRTGLSRVTVRKIMNGDPTVAIGYYLMVLGVLGLEQDFTDVGKDDELGRKLQDIELLR
                     K"
     gene            341..1582
                     /locus_tag="PXE26_002550"
     CDS             341..1582
                     /locus_tag="PXE26_002550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HipA domain-containing protein"
                     /protein_id="HDL5595077.1"
                     /translation="MMNKRIYVFADWETFSQPELVGVLSSDVVRGKENFRFSYDNEWL
                     SSPYVQQIDPNLYLYPGEQYSTDTQNFHIFLDSCPDRWGRLLMKRREAALASQENRKP
                     KLLIESDYLLGVHDMNRMGALRFKTELNGPFLDNNTRLAAPPLSSLRELEFAAIQLES
                     SDNVDDPDYLKWLHMLISPGSSLGGARPKASVIDELNQLWIAKFPSRYDDYDIALWEY
                     LAYRLAIQAKIEMATCRIERFNQEHHTFLTQRFDRHCGKRRHFTSALTQLGYYDGDYE
                     ASYLEIAQFLTESGSNTRIDLAQLWRRIVFNIAISNTDDHLRNHGFIYAQEGWILSPA
                     YDLNPVPLSQGLHLNITDSDNRLDYQLAFDVADFFQLSKQQAVQIYDEVLKEINNWQN
                     VAKEIGIPRQEQEQMKFAFNV"
BASE COUNT          637 a          330 c          381 g          555 t
ORIGIN      
        1 ggatattata atttccaaaa aacataaaaa tggtaataat aatgctcagt aaaacaaaat
       61 caccaactct gtttcctaag taccaaaatg ccttgcttca acttggagaa aatattaggc
      121 tagcctcaaa aaggagaatg tttactcaaa cattattggc tcaaagaact gggcttagcc
      181 gtgtaacagt gagaaaaatt atgaatggtg atccaactgt tgcgattgga tactacctaa
      241 tggttttagg tgttctcggt ctagaacaag atttcactga tgttggaaag gatgatgagt
      301 taggacgtaa attgcaagat attgaattat taaggaaata atgatgaata aacgaattta
      361 tgtgtttgca gattgggaaa ctttttcaca gcctgaatta gttggggtgc tttcttctga
      421 tgtagtgaga ggcaaagaaa atttccgttt tagctacgat aacgagtggt taagttcacc
      481 ctatgtacag cagattgatc ctaacttata cctttaccct ggagagcaat acagtacaga
      541 tacacaaaat tttcatatct ttttagattc ttgccctgat agatggggta gattgttaat
      601 gaaacgtcgg gaggcagctc tagctagtca agagaatcgt aaacctaagt tactaataga
      661 aagtgattac cttttaggcg tacacgatat gaatagaatg ggggctttac gttttaaaac
      721 tgaattgaat ggtccatttt tggacaataa tactcgtctt gcagcaccac cactgtcttc
      781 cttaagagaa ttagaatttg cagcaataca acttgaaagc agtgataatg tggacgatcc
      841 ggattattta aaatggcttc atatgttgat atcaccaggg tcgtcactag gcggagctag
      901 accaaaagct tcggtaatag atgaactaaa tcaactatgg attgccaaat ttccaagtcg
      961 gtacgatgat tatgatattg ctctttggga atatttagct tatcgactgg ctattcaagc
     1021 caaaattgaa atggctactt gtagaattga acgctttaac caagaacacc atactttttt
     1081 gacacaaaga tttgatcgac attgtggaaa acgtcgccat tttacgtcag cattaaccca
     1141 gctgggttat tatgacggag actatgaggc aagctacctt gagattgctc aatttttaac
     1201 agaaagtggt tcaaatactc gaattgactt ggctcaacta tggagaagaa ttgtattcaa
     1261 tattgctatt tcgaatactg atgatcattt gcgtaaccac ggatttatct acgctcaaga
     1321 ggggtggata ttatctcccg catacgattt aaacccagta ccactatctc aaggattaca
     1381 tttaaacata acagacagcg ataaccgatt ggattatcag ctcgcctttg atgttgctga
     1441 cttttttcaa ttatctaagc aacaagccgt acagatttat gatgaagtac tgaaagaaat
     1501 taataattgg caaaatgtcg caaaagaaat tggtattcca cgccaagagc aagagcagat
     1561 gaaatttgca tttaatgtat agtaattgac ttgtggaacc aatcatcgta gtctatgttc
     1621 taaaaaagta gcgttacctt aataacgcaa tgagttgttg gctcattgtc aatctgatat
     1681 taatctagga tgtaaaggcc tagcggtggc aggcaccaga aagacctgat actaatctag
     1741 ggtataaaga cctagcggtg gcagacacca gaacaaacca acatcttata aaaccattag
     1801 taacacttga cttttttctc aaccatatcc gcaaggaagc gtagccttaa aaacgcaaat
     1861 gtaggaaact aatctaggca tatataatgc ctagcagatg gca
//
LOCUS       DANLZD010000227         1856 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.228, whole genome shotgun sequence.
ACCESSION   DANLZD010000227 DANLZD010000000
VERSION     DANLZD010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1856)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1856)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1856
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.228"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..464
                     /locus_tag="PXE26_002551"
     CDS             <1..464
                     /locus_tag="PXE26_002551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GHKL domain-containing protein"
                     /protein_id="HDL5595078.1"
                     /translation="IFVIDEIWNNVIEDAKFETSQNNIIFIIKQNIKNPESYSINGAV
                     GLLASALENLIRNGQKYAKKMLSVSMNVEDGHLFLTVEDDGEGVPENEYENILKPFYR
                     VDEARARETGGAGLGLAIVQNVVKQHQGTIHLDKSNMGGLKIELKLPLWRS"
     gene            514..>1856
                     /locus_tag="PXE26_002552"
     CDS             514..>1856
                     /locus_tag="PXE26_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5595079.1"
                     /translation="MKLIEIENLNKYFGLGQTRAHILKNINLSIERGDFVAIIGASGS
                     GKSTLMNIIGCLDTASSGICRIDGKETQTMSADELSDLRQRKLGFIFQRYNLLSALNA
                     NENVALPAIYAGMDSSSRKKRADTLLTKLGLSDKTQHKPNELSGGQQQRVSIARALMN
                     GGEIILADEPTGALDSKSGETVLEILRDLHYEGHTIIMVTHDPNIAAQASRIVEIKDG
                     QIIRDERQRTDVQETALNKTTTQKPRFWNQLFESFKMATSAIMAHKMRAILTMLGIII
                     GITSVISVVALGRGSQQQILSNINNLGTNTMDIMNGTGFGDRRANLTKNLTISDALML
                     SRQNYVESTTPSSNVSATLIYGNTAVTGSVRGVGEQFIDVKGLKLISGRFFSAEEVKN
                     VAQVIVIDPNTQKDLGLTEPVEGKTILVDKKPLQIIGVAQQSNNMNQSSLTLWAP"
BASE COUNT          623 a          351 c          390 g          492 t
ORIGIN      
        1 aaatttttgt aattgatgaa atttggaata atgtaattga agatgctaaa tttgaaacct
       61 cacaaaataa tattattttt atcatcaagc aaaacatcaa aaaccccgaa tcttattcta
      121 ttaacggggc cgtaggttta ctggctagtg ctttagaaaa tttgatccga aacggccaaa
      181 aatatgcaaa aaaaatgctg tcggtctcaa tgaatgtaga agatggtcat ttatttctca
      241 cagttgaaga tgatggcgag ggggttcctg aaaacgaata tgaaaatatt cttaaacctt
      301 tttaccgcgt agatgaagca agggcaagag aaacaggagg agccgggcta ggattagcga
      361 ttgtgcaaaa tgtagttaaa cagcaccaag gtactattca tttagataaa agtaatatgg
      421 gaggattaaa aatcgaactg aaacttcccc tttggcgttc ctaaggcaaa aagcatatcg
      481 tttgtaaaaa acagtcgaaa aataaccgct tgtatgaaat taattgaaat agaaaatctc
      541 aataaatact ttggcttggg gcaaacccga gcccatattc taaaaaatat caatctcagt
      601 attgaacggg gtgattttgt cgcaattata ggtgcttcag gttctggcaa atctacctta
      661 atgaacatta ttggctgttt agatactgcc agctcaggta tttgccgtat tgatggcaaa
      721 gagacccaaa caatgtctgc agatgaactg tctgatttac gccaacgtaa actggggttt
      781 attttccaac gctataatct cctttcagct ttgaatgcaa acgaaaatgt tgccctacct
      841 gcaatttacg ccggaatgga tagctcatca cgcaaaaaac gagctgatac gttattaacg
      901 aagttaggat tatcagataa aacccaacat aagccgaatg agttatctgg ggggcaacag
      961 caacgagtca gcattgcacg agccttaatg aacggcggtg aaatcattct tgcagacgag
     1021 cctaccggtg cattagattc taaaagtggc gaaactgtat tggaaatctt gcgagatcta
     1081 cactacgaag gtcataccat tattatggta acacacgacc caaacattgc cgctcaagcc
     1141 agccgtatcg ttgaaattaa agatgggcaa atcattcgag atgaacgcca acgtactgat
     1201 gttcaagaaa cggctctcaa taaaacgaca acacaaaaac ctcgcttttg gaatcaactg
     1261 tttgaatcct tcaaaatggc aaccagtgca attatggcgc ataaaatgcg ggcaatcctc
     1321 acgatgctgg gcattattat tggcattacc tctgtgattt ccgtagtcgc tctcggtcga
     1381 ggctcgcaac aacaaatcct ttctaatatc aacaacctag gcacaaatac gatggatatt
     1441 atgaatggaa ccggctttgg cgatagaaga gccaatctga ctaagaattt aaccatcagt
     1501 gatgccttaa tgttgagtcg gcaaaactat gtggaaagca ctactccttc aagcaatgtc
     1561 agtgccacat tgatttatgg taataccgca gtaaccggtt cagtacgagg tgttggagag
     1621 caatttattg atgtgaaagg attaaagctg atttcagggc gctttttcag tgccgaggaa
     1681 gtaaaaaatg tagcgcaggt tattgtaatt gaccctaaca ctcaaaaaga tttggggcta
     1741 acagagcctg ttgaaggtaa aacgatttta gtggataaaa aaccgttaca aatcattggt
     1801 gtggcgcaac agtcaaacaa tatgaaccaa agtagcctta ccttatgggc gcctta
//
LOCUS       DANLZD010000228         1777 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.229, whole genome shotgun sequence.
ACCESSION   DANLZD010000228 DANLZD010000000
VERSION     DANLZD010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.229"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(192..686)
                     /locus_tag="PXE26_002553"
     CDS             complement(192..686)
                     /locus_tag="PXE26_002553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5595080.1"
                     /translation="MSRKYKFHEKSGAYFVSFATVYWVGVFVREIYFQVIVDALDYCR
                     KHKGMILYAYCIMPTHIHLLFQAENQNPSDLIRDFKTFTAKILIQRIKDNLQENRREW
                     LLWMFSRAAERRCNVKQYQFWQHHNQPIEIYSQKFFDEKLNYIHQNPVVSGFVSEPWE
                     WKYN"
     gene            complement(1290..>1777)
                     /locus_tag="PXE26_002554"
     CDS             complement(1290..>1777)
                     /locus_tag="PXE26_002554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transferrin-binding protein"
                     /protein_id="HDL5595081.1"
                     /translation="SAPSLFIFHKNYEKPVNIKGIELEFSYDIGSFYGNLAYARQNTN
                     QPVSFTDASSRVDAASHYGFKTQGFGASKISALPRDYGSLELGTRWFDQRLQIGGVAK
                     YYGKSKRIAIDEFNYTYYPGTHIVKETHRLEETVNKQPIIVDFYVSYEPIKSLILKLE
                     L"
BASE COUNT          605 a          330 c          271 g          571 t
ORIGIN      
        1 gatctgatac ataaaagcgg gaattaatta ctgggtagaa ataggttata tcgctatttt
       61 catttgggtt atctactcat agaatacctt taactaaaac ataataagca gaatttacgc
      121 aaaattctcc gacagacaag taaaaattca caatttttcg acagagatcg caaaaataca
      181 agcagtttat ttcaattata tttccattcc caaggctcag acacaaaacc acttaccact
      241 ggattttgat gaatataatt taacttttca tcaaagaatt tctgcgaata gatttcaata
      301 ggttggttat gatgttgcca gaattgatat tgttttacat tacaacgtcg ttcagccgcc
      361 cgagaaaaca tccacagcaa ccattcccga cggttttctt gcaaattatc tttaattctc
      421 tgaataagta ttttagcggt gaatgttttg aaatctcgta ttaaatcaga aggattttga
      481 ttttctgctt gaaataataa atggatatga gttggcataa tacaataggc atacaaaatc
      541 attcccttat gttttctgca gtaatctaag gcatcaacaa ttacctgaaa ataaatctct
      601 ctcacaaaca caccaaccca ataaacagtt gcaaaactga caaaataagc accgctcttt
      661 tcgtggaatt tatattttcg gctcatagcc tttctcaact taaaaaggaa taagaaaaat
      721 accctattca aaattaaatt ccacaagcca atataacttt ttcgatctag atcgcaaaaa
      781 tcattaaaac ttgcaaagtg ttgataaaat ttaaccgctt gtgataagcc aaagaaatac
      841 tgaaatgata gcaatggatg gataaataaa atgatgacgc aagcgtccac gcttgtgcca
      901 aaaacaaaag cccaaataaa ccaaatttta cttggctgat ttaggctttt atcttatgac
      961 tgaaatactt tcagaacagg aattaactgg cacaagcgtg gacgcttgca ccatctgggt
     1021 taaatcctta tattataagg ttttaaccta ctgtgcagac tcaattttag tcactatgcc
     1081 aaataattag ttaaaggaaa tttaagctag cttatctagg acaaccccat ttagaattta
     1141 taacttgtgc taaacactat agttctccct cttgcataat tattgagcgt ataaataggt
     1201 tcatcactga tatcagaatt gtaaaccctc tgacttgctg catcattatt agcatcaaga
     1261 ggatcaatgt actttttgtc aaagacattt tatagttcta actttaatat aagcgacttg
     1321 attggttcgt agctcacgta aaaatcaaca ataataggtt gtttatttac ggtttcttca
     1381 agccgatgag tttctttcac aatatgtgtt ccaggataat aagtatagtt aaactcatct
     1441 atcgcaatac gtttactttt tccgtaatat tttgccactc cgccaatttg tagtctttga
     1501 tcaaaccatc ttgtccctaa ctccaatgag ccatagtctc ttggtaacgc tgaaattttg
     1561 ctggcaccaa aaccttgagt tttaaaacca taatgagaag cggcatctac ccttgaactt
     1621 gcatctgtaa aggatacggg ttgattcgta ttttgacgag cataagctaa gttgccatag
     1681 aaagagccta tatcataact aaattctaat tctatccctt tgatatttac tggtttttca
     1741 tagtttttgt ggaaaatgaa taaactagga gcactac
//
LOCUS       DANLZD010000229         1677 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.230, whole genome shotgun sequence.
ACCESSION   DANLZD010000229 DANLZD010000000
VERSION     DANLZD010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.230"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            387..866
                     /locus_tag="PXE26_002555"
     CDS             387..866
                     /locus_tag="PXE26_002555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HDL5595082.1"
                     /translation="MARVTTELNNTQIKNAKAQTKDYKLMDGKGLFLLVKKNGSKLWR
                     FRYKKPITGKESDLGIGSYPETTLAQARTIREEYRALLAENIDPLEHRQRLEAEALAE
                     IENTFYKVCLKWRDKCESRVKNGELQALTLKKNWRILEKYLLPCRLLYSKHHAKTSY"
     gene            835..1599
                     /locus_tag="PXE26_002556"
     CDS             835..1599
                     /locus_tag="PXE26_002556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005704989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5595083.1"
                     /translation="MPNITPKLVINALEPAKEKGIGDTLKRAIRLLNEVMNFAVNADV
                     IEFNKCQNVGSNFSVAKSEHNPTIHPKELPQFLAALRDYNLSFQTKMLIKWQLLTMTR
                     SREASETLWSEIDLEAKTWTISAERMKMKRPHVIPLSRQAVEILERMRKITGNSPFVF
                     QSEMKPRQPMNSQTANRAIGLLGYAGTLTAHGMRSIASTYLNEQLVNYDVVEACLAHV
                     IKDQTRKAYNRSDYLDQRVDVMQQWADYVESCSTGI"
BASE COUNT          564 a          325 c          334 g          454 t
ORIGIN      
        1 aaccaaccta gccgcacaaa tgaacatttt ataaacgaaa ataaatagct tttatgtaaa
       61 tgatccctaa aatgatccct atttttgtag agtttatttt atctctttat aaatcaataa
      121 gttataagcg agttcagagg aggctgggac caacttaaat tttccactct tatttcttca
      181 ttcgcattct tacgcaaaac cattgatgat actggcttta gagcaatttt aaattatttc
      241 ttcattcgta ttctttcgtg ttcttgcgtt tacatcccct tattttaagg gtatatttga
      301 gggtataacg taaaagggta tgaaacccat acccttaaat cccttatgat tctgataaag
      361 cacaatgcga ttttaggtaa atttttatgg ctagagttac cacagaatta aataacactc
      421 aaatcaaaaa cgcaaaggct caaaccaaag actacaagct aatggacggc aaggggctgt
      481 ttttgctggt taagaaaaac ggctcgaagt tatggcggtt taggtataaa aagccgatta
      541 ccggcaaaga gagcgattta ggcataggca gttaccccga aactacccta gcccaagcaa
      601 gaacgattag agaagaatat agggcattac tagcggaaaa tatcgaccca ctcgaacacc
      661 gccaaagatt agaggctgaa gcgttagccg aaatagaaaa caccttttat aaagtctgct
      721 tgaaatggcg tgataaatgc gaaagccgtg taaaaaatgg cgaacttcaa gccttaacgc
      781 tgaagaagaa ttggcgaatc cttgaaaagt atcttttgcc ttgccgacta ctctattcca
      841 aacatcacgc caaaactagt tattaatgct ttagagcctg ctaaagaaaa aggcataggc
      901 gacaccctta aacgagcaat taggctactt aatgaagtga tgaattttgc ggtaaatgcg
      961 gacgttatcg agtttaacaa atgccaaaat gtaggctcaa attttagcgt agcgaaatct
     1021 gaacataacc caacgataca cccaaaagag ctacctcaat ttttagctgc attgcgtgat
     1081 tacaacctat catttcaaac taagatgttg attaaatggc aactattaac aatgacacgc
     1141 tcacgagagg caagcgaaac gttgtggagt gaaattgatt tagaggcgaa aacgtggacc
     1201 atttcagccg aaagaatgaa gatgaaacgc cctcacgtta tccctctttc acggcaagcg
     1261 gtcgaaattt tagaaagaat gcgaaaaatc acagggaata gcccatttgt ttttcaaagc
     1321 gaaatgaaac cacgccaacc gatgaacagc caaaccgcca acagagccat aggcttatta
     1381 ggctatgccg gcactctaac ggctcacggt atgcggtcta ttgcctcaac ctatttgaat
     1441 gagcagttag tcaattatga tgtagtagag gcttgtttag ctcacgttat caaagaccaa
     1501 acccgaaagg cttataaccg ttctgattat ttagatcagc gtgtagatgt aatgcagcaa
     1561 tgggcggatt atgtagaaag ctgctcaacg gggatttagt aaatttttgg cggaatttga
     1621 ccgcttgttt aattagaggt gtacaaatat gaataacctt tctgagttta aattacg
//
LOCUS       DANLZD010000230         1663 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.231, whole genome shotgun sequence.
ACCESSION   DANLZD010000230 DANLZD010000000
VERSION     DANLZD010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1663
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.231"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            50..1546
                     /gene="pepA"
                     /locus_tag="PXE26_002557"
     CDS             50..1546
                     /gene="pepA"
                     /locus_tag="PXE26_002557"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HDL5595084.1"
                     /translation="MEFSVKNGSVEKQRTACLVVGVYEPRRLCSAAEQLDKLSNGYIS
                     TLLRRGDLEGKAGQTLLLHNVPNVLADRVLLVGCGKERELTERQYKQIIQKSVQTINE
                     TGSMEAVSFLTELHVKGRTPYWNVRFAVEAIQEQLYAYNDFKSIKPEVRRELRRVIFN
                     VAHRKDLPDAERALEHGKAVALGISHAKNVANCPPNVCNPHYLAELAKGLAYDYPAIS
                     TTIVDEKQMAELGMNAYLAVSRASENEAFLSVIEYKGNPNADAKPIILVGKGMTFDSG
                     GLSIKPAEAMDEMKYDMCGAATVYGTIKAIAEMKLPLNVIGLLAGCENAVDGKAYRPG
                     DILTTMSGLTVEVLNTDAEGRLVLCDALSYVERFEPELVIDIATLTGACMIALGNHNS
                     GLMSPHNGLANELLAAAEQADDKAWRLPLGEEYQEQLKSNFADLANIGGRLGGACTAG
                     QFLSNFTKKYTWAHLDIAGTAWKSGAAKGATGRPVSLLTQFLINKAQV"
BASE COUNT          509 a          337 c          372 g          445 t
ORIGIN      
        1 attatgttgg cattataaaa tctgtagcaa taaaaattaa ggaggaaaaa tggaatttag
       61 tgtcaaaaat ggcagtgttg agaaacaaag aaccgcctgt ttggttgttg gtgtctatga
      121 accccgccga ttatgttctg ccgcagaaca gcttgataaa ttaagtaacg gctatatcag
      181 cacattactg agaagaggag atttagaagg caaagcaggg caaaccttac tcttgcataa
      241 tgtgccgaat gtactcgctg atcgagtatt attagtcggc tgtggaaaag agcgtgaatt
      301 aactgaacgc caatacaaac aaattattca aaaaagtgta caaactatta atgaaaccgg
      361 ttcaatggaa gctgtcagct ttttaaccga actgcacgtt aaaggtagaa caccttattg
      421 gaatgtgcga tttgcggtag aggcaatcca agaacaacta tatgcctata acgatttcaa
      481 aagcatcaaa cctgaagttc gccgtgaatt acgccgtgtg atttttaatg tcgcacaccg
      541 taaagatctt cctgatgccg aacgagcttt agaacacgga aaagccgtag cacttggaat
      601 cagccacgct aaaaatgtag caaattgtcc gcctaatgtg tgtaatcctc actatttagc
      661 cgaattggct aagggtttag cctacgacta tcctgccatt tcaactacca ttgttgatga
      721 aaaacagatg gcagaattgg gaatgaatgc ttacttagcg gtttccagag cctctgaaaa
      781 tgaggccttt ctttcagtga ttgaatataa aggcaacccg aatgctgatg cgaagccgat
      841 tatcttagtc ggcaaaggaa tgacctttga ctctggcggt ttatccatta aacctgcgga
      901 ggcgatggac gaaatgaaat acgatatgtg cggagctgct actgtttacg gtacaatcaa
      961 agcaattgcc gagatgaaat taccactcaa tgttatcggc ttactcgccg gctgtgaaaa
     1021 tgcggttgat ggcaaagcct atcgaccggg ggatattctc actacaatgt ctggtttaac
     1081 cgttgaggta ctcaacaccg atgcagaagg acgtttagtg ctatgtgatg ctctcagcta
     1141 tgtagaacgt tttgaaccgg aattagtgat tgatattgct accctaactg gtgcttgcat
     1201 gattgcctta ggtaatcata acagcgggct gatgtcacct cataacggtt tagcaaacga
     1261 actcttagct gccgcagagc aagccgatga caaagcgtgg cgtttacctt taggggaaga
     1321 atatcaagaa cagttaaaat ctaactttgc tgatcttgct aatatcggcg gacgtttagg
     1381 cggagcctgt actgccggtc aattcctctc taactttaca aagaaatata cttgggcgca
     1441 tctagatatt gccggcacgg cttggaaatc tggggcagcc aaaggggcga ccggcagacc
     1501 ggtatcctta ctaacacaat ttttgatcaa taaagcccag gtctaactct cacaagcggt
     1561 ctgattttat cgagtttttg caaaaagaaa atcagaccga tcctcttcat acgcccctat
     1621 attcttttta gttatatcaa ataaattcca gctactagaa aag
//
LOCUS       DANLZD010000231         1661 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.232, whole genome shotgun sequence.
ACCESSION   DANLZD010000231 DANLZD010000000
VERSION     DANLZD010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.232"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            318..695
                     /locus_tag="PXE26_002558"
     CDS             318..695
                     /locus_tag="PXE26_002558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL5595085.1"
                     /translation="MDKSQGVVSVNIRGGSGFGRANNAVGPNYMGMLAGKYQFNDSTW
                     IGALFGHSWRKISQNYKIGGGRKVTDSSIDLSKIDDLDKESSTTSPFNAAHLKQKPMS
                     RMAKLEYGDKYQTITLLPKSGSG"
     gene            1284..>1661
                     /locus_tag="PXE26_002559"
     CDS             1284..>1661
                     /locus_tag="PXE26_002559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005642184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL5595086.1"
                     /translation="MTISIRQLAKKHCTYIPDEDFPNDPELGEFNCPDVNFPHTATGK
                     HKRINYSATLSAYIHDLFTPFISYSQTHRAPNIKEIFFSNLGDYGVNTALQPEQAKTT
                     QFGINGFKERVFSEEDKLGFKVLF"
BASE COUNT          587 a          285 c          310 g          479 t
ORIGIN      
        1 ataaaggcac acttctttct tcagtgtctt tagcgttgcg atttaaattt aattacattt
       61 tttataggaa agacaataga aatgaagatc aaaaaatatg tatttcacct gacttataca
      121 acacttatct gccccttacc tagggtattc gcagaggaag gttatatgtt agatacggtt
      181 gaggttaaag cccaagcaat aaaaaaacag atgaagtttt cattaaaaca ggggcaataa
      241 gcacccgaga taaaatcttg gaatcaaacc aaagcttaga gactattgtt cgttctatgc
      301 ctggcgcatt tacacaaatg gataaatctc aaggtgtggt ttctgttaat attcgaggag
      361 gttctggatt tgggcgagct aataatgcag taggcccaaa ttatatggga atgctcgctg
      421 gcaaatacca attcaatgac tctacttgga taggagcatt atttgggcat agttggcgca
      481 aaatctctca aaattataaa ataggaggcg gacgaaaagt tacggatagc tcgattgacc
      541 ttagtaaaat tgatgatcta gataaagaaa gttctaccac ctcaccgttc aatgcagctc
      601 atttaaaaca aaaaccaatg agtcgtatgg ctaaattgga atatggcgat aaataccaaa
      661 ccatcacact attaccaaag tcaggtagcg ggtagacatt taaaaaacca aaacaaccag
      721 ttaaattatc gttttcactt gcccgagtca ccttggttag atgttcaagt ggcctatgcg
      781 gaaaatcaag gcaaacaaaa ctacaacaaa gggagctgaa ttaataataa atatttaatt
      841 caaggtttgg caattaacaa caaagcgaca accttaaatt tgagtaacac ctttaaagtg
      901 tctccgttta aagatggaga atgggaagca atattaggtt ttaatcgttt aaagaaccgc
      961 tatagtaaaa atagacatcc tgcggaatta aactataact tagagaatgg cgaaaccagc
     1021 gaaaacaacg attctgtagg aatgacagcc gttcgtaaat cgctttatac ttcaactttc
     1081 cagcctgatg gcgaacagaa gttcgatact ttttatctcg acaatcactt taactatggt
     1141 atatggggat tggatataaa cgcaaatatt aataccgctc ggtttattgg tcagcgtttt
     1201 aaatattttc cttttgcgat tagagaattg gagtcagata ttagacaggc aagtagaaat
     1261 aggcagtttg agcatttaag gtcattacaa tctcaattag acaacttgca aaaaaacatt
     1321 gtacatatat tccagatgag gattttccta atgatcctga attgggagag tttaactgtc
     1381 ctgatgtcaa ttttcctcat acagcaacag gaaaacataa acgaattaat tattcagcaa
     1441 ccttgtctgc ttatattcac gatttattca cgccctttat tagttattct caaacacatc
     1501 gagcccctaa tattaaagaa atattcttct ctaatttagg tgactatggt gtaaataccg
     1561 cactacaacc agagcaagcg aaaacaacac agtttggtat taatggattc aaagaacggg
     1621 tatttagtga agaagataaa ttaggattta aagtgctatt t
//
LOCUS       DANLZD010000232         1613 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.233, whole genome shotgun sequence.
ACCESSION   DANLZD010000232 DANLZD010000000
VERSION     DANLZD010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1613)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1613)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1613
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.233"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..225
                     /locus_tag="PXE26_002560"
     CDS             <1..225
                     /locus_tag="PXE26_002560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595087.1"
                     /translation="KQNKNLTDESEEQAILAYLTENIMARIEKEQPLEKTLILYSEQL
                     ASFEQKSPMALHREKFEAKPTGLAELINNL"
     gene            236..1186
                     /locus_tag="PXE26_002561"
     CDS             236..1186
                     /locus_tag="PXE26_002561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P2 family phage major capsid protein"
                     /protein_id="HDL5595088.1"
                     /translation="MSLSTFAHALKLDKQGNVILFDDSPEEQAKLISRLKQNRLFKLL
                     NLVQTKHAKGEAIGLFTPIAGTTNTESGEEREPKQALAPAQKYHCEQINIDSYIRYEK
                     IDAYNLENSLEERLNQLLDDNLLRGLLMVGWQGVSRADTSNATNNQLAQDVKKGWLQK
                     IREGKPEAVINGATIGKEQQYKSLNALIKQGLGKISPAYAMGGDMIAICGRDIIADDV
                     IQLEHNDLSENLADLLTLCQQAKGGLKAVSIPYFPSNAILITRLDNLSLYLHLNNIRR
                     KAFDTPQKDSVETFYSLNVDYIVEDFNACCLIENIEVIEE"
     gene            1183..1377
                     /locus_tag="PXE26_002562"
     CDS             1183..1377
                     /locus_tag="PXE26_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595089.1"
                     /translation="MSLESYIQQAEEMELLEKLDFVSDLLELEKVSEIEAYRILTAHG
                     EPKPQPAQEKLIGCVDFLDD"
BASE COUNT          603 a          329 c          305 g          376 t
ORIGIN      
        1 aaacaaaata aaaacctcac agatgaaagt gaagagcaag ctattctggc atatctaaca
       61 gaaaatataa tggctagaat tgaaaaggaa cagccacttg aaaaaacatt aattctttat
      121 tctgaacagt tagcaagttt tgaacaaaaa tcgccaatgg cattacaccg tgaaaaattt
      181 gaagcaaaac ctaccggctt agctgaatta attaataact tataagaggt aaaaaatgag
      241 tttatccact ttcgcccacg cattaaaact agataaacaa ggtaacgtta ttttatttga
      301 cgatagcccc gaagaacagg caaaactaat tagccgctta aaacaaaatc gcctttttaa
      361 attattgaat ttagtgcaaa ccaagcacgc aaagggcgaa gcgattgggc tattcacacc
      421 gatagccggc acaaccaaca ccgaaagcgg agaggaacga gagccaaaac aagcccttgc
      481 acccgctcaa aaataccact gcgaacaaat caacattgat agctatattc gctatgaaaa
      541 aatcgatgct tacaacctcg aaaacagctt agaagaacgc ttaaatcagt tacttgatga
      601 caaccttcta agagggcttt taatggttgg ctggcaaggc gtaagccgtg cagatacatc
      661 aaacgcgaca aacaaccaac tcgcccaaga cgtgaaaaaa ggctggctac aaaaaatcag
      721 agagggcaag cccgaagcgg taattaatgg agcaaccata ggcaaagagc aacaatacaa
      781 aagcctaaat gctctgatta agcagggatt aggcaaaatt agcccagcgt atgcaatggg
      841 cggagatatg atcgccattt gtgggcggga tattatcgct gatgatgtaa ttcagcttga
      901 acacaacgat ttaagcgaaa acctagccga cttattaacc ttatgccaac aagctaaagg
      961 cggactaaaa gcggtaagta ttccctactt cccaagcaat gcgattttaa tcactcgatt
     1021 agataacctt tcgctatatc ttcatttaaa caatatccgc cgtaaagcgt ttgatacgcc
     1081 acaaaaagac agcgtagaga cattttactc cctcaatgtg gattacattg tagaagattt
     1141 taacgcctgt tgtttaattg aaaatattga ggttattgaa gaatgagcct agaaagctat
     1201 atccaacaag cggaagaaat ggagctttta gaaaaactcg attttgtttc agacctgtta
     1261 gaacttgaga aagtcagcga aattgaagcc tatcgcattt taaccgccca cggcgaacct
     1321 aaaccccaac cggcacaaga aaagctaata ggttgcgtag attttcttga tgactaaccc
     1381 aagccccgaa aggggctttt tgcatttttg caacaaaaaa cgaccgcttg caccctttga
     1441 aattattgct atcattaata aaaaacaata accaaatcaa atgagagtac agcaatgaca
     1501 aactataaac taccggctag aaagtggtac accttagagc aggcaacaaa acgcattaaa
     1561 caactcactg gcgaagatat agaaatagaa gatttattac attattggta ttt
//
LOCUS       DANLZD010000233         1575 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.234, whole genome shotgun sequence.
ACCESSION   DANLZD010000233 DANLZD010000000
VERSION     DANLZD010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.234"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..437
                     /locus_tag="PXE26_002563"
     CDS             <1..437
                     /locus_tag="PXE26_002563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL5595090.1"
                     /translation="LSEFNLKNYLDDEVSYTYFTDDNVLNYRNSIYGLVATLNYCNTE
                     AVTRRLYYKLSSLNKIMDFSITQEDWYRSVTETQRNCVLIKNSAIEDYSINLTANKIQ
                     AKNSPIFIADPFNVLYIDDKKLLKGRDSLLKLVYKTSPYLGV"
     gene            439..1506
                     /locus_tag="PXE26_002564"
     CDS             439..1506
                     /locus_tag="PXE26_002564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595091.1"
                     /translation="MKFILFDSILERHLGESLKRALESLGHQAVFTDLILHGHSMIYK
                     QADIDFMWKKVKDICDEKADMFISFRPMNLTTEMLEYIGKRMKTAIWLSDDPVLYKTC
                     YSQVVNHYDVLLHCGYKEVMDFYEANNHPKGFNFPFWTDHVAFPSVYNPLHSDYEIAF
                     LGNMNGQVRRKRYMELASLPFTKKVFGLIDSDPLAMHGGFINEAYLHTKRVTEVLSKA
                     KVGVSIPQFFTEYNGLDYDYPELAGLGYFQFPSRVIQYAASGLPIAAVGDERMKEVYP
                     EIFVGNSITELEPYIKQICEDYDFALSESAKILTRFRKNYSALSRAMMLIDLVENLDK
                     LQSQTTQERAILFTKYKAQYN"
BASE COUNT          539 a          221 c          285 g          530 t
ORIGIN      
        1 ctctttctga gtttaatctg aaaaactatt tagatgatga agtttcttac acttatttca
       61 ccgatgataa tgtcctaaat tatcgtaatt ctatttatgg attggtagca acacttaatt
      121 attgtaatac agaagcagta accagaagat tgtactataa attatcatca ttgaataaaa
      181 taatggactt ttcaattact caggaagact ggtacagaag tgttacagaa actcaacgta
      241 attgtgtttt aattaaaaat agtgctattg aagattattc aatcaatctt acggccaata
      301 aaattcaggc taaaaattca cctatcttta tagctgatcc atttaatgtg ctatatatag
      361 atgataaaaa gttattgaaa ggtagagatt ccttacttaa attggtttat aagacttctc
      421 catatttagg ggtttaatat gaagtttatt ttatttgatt ctattttaga acgtcatttg
      481 ggcgaaagtt taaaaagagc tttggagtcg ttagggcatc aagcagtatt tacagattta
      541 attttgcacg gccattctat gatttataaa caagcggaca tagatttcat gtggaaaaaa
      601 gtaaaagata tttgtgatga aaaagcagat atgtttatct catttcggcc gatgaatcta
      661 acgacagaaa tgcttgagta tataggcaag cgaatgaaga ccgctatttg gctttcagat
      721 gaccctgttt tatataaaac ttgctattct caagtagtaa atcattatga tgtattatta
      781 cattgcggat ataaagaagt tatggatttt tatgaagcta ataaccatcc aaaaggcttt
      841 aattttccgt tttggacaga tcatgtagca tttccaagtg tatataaccc gcttcattct
      901 gattatgaga ttgcattttt aggtaatatg aatgggcaag ttagacgcaa aagatacatg
      961 gaattggctt cattaccatt taccaaaaaa gtattcggtt taatagattc agatccatta
     1021 gcaatgcatg gtggatttat caatgaagca tatttacata caaaacgtgt aacagaggtt
     1081 ttatctaagg caaaagttgg ggtgagtatc ccacaattct ttaccgaata taatggttta
     1141 gattatgatt atcctgaatt ggcgggttta ggatatttcc aatttcctag tcgagttatc
     1201 caatatgctg caagtgggtt acctattgca gcggttggtg atgagagaat gaaggaagtt
     1261 tatcctgaaa tctttgttgg caatagtatt acagagctgg agccgtacat taaacaaatt
     1321 tgtgaagatt atgattttgc actatcagaa tcggctaaaa ttctaactag atttagaaag
     1381 aactattctg ccttatcccg tgccatgatg ttgattgatt tggtagaaaa tttagacaaa
     1441 ctacagagcc agacaacaca agagcgcgca attttattta ctaaatataa agctcaatac
     1501 aactaggagt aaactttatg aatattaaag acttacttaa agagatcagc tttaaagctg
     1561 taattaatga tctta
//
LOCUS       DANLZD010000234         1373 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.235, whole genome shotgun sequence.
ACCESSION   DANLZD010000234 DANLZD010000000
VERSION     DANLZD010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1373
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.235"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>1373
                     /locus_tag="PXE26_002565"
     CDS             <1..>1373
                     /locus_tag="PXE26_002565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595092.1"
                     /translation="STEQGKKLYSRVGYDKGVWEALSVLLPERFDFEVFEVIDYSKEW
                     SWFEIIVENLFWRQPEKINMQKLHQFFKNSPYFNQATWINILYQLATEINHPLNIKYL
                     HNKLYSFSLADRDEIWTAFIALESDQCPAIERLLTWCQKSSGQENIEPEALLLGAIAV
                     SWLFTSTDKRSRNGYINALAHLLWNRLEIALALFKEFIEVNDPYVMEGILSAIHGAVA
                     YSENSSGLKALALEIDNQIFNQPETEEIYPNVLVRDYARHIIEYSLQKDEYSSDDIEI
                     IRERITPPYRSSFPQNLPTNEEIDKKYHSDGQRIIIRSMTTEYGRGMCGYGDFGRYTF
                     EAKFRNWESYKFGNLINVDLLSNYACQMIFEQFGYDDKKHLEFDKETRSRYWRRDDTN
                     KIERIGKKYQWLALYEILARVMDNFPTFSNRYADEIGLEYITNLDNFYLPKTQIKIVP
                     PTKTDVF"
BASE COUNT          472 a          197 c          257 g          447 t
ORIGIN      
        1 aagcactgaa caaggaaaaa agctatatag tagagttggc tatgataagg gcgtatggga
       61 agcattaagt gtattgttgc cagaacgatt tgattttgaa gtatttgaag tgattgatta
      121 ttcaaaggaa tggtcttggt ttgagattat tgtagaaaat ctcttttgga ggcagcctga
      181 aaaaatcaat atgcaaaaac tacatcaatt tttcaaaaat agtccatatt ttaatcaagc
      241 aacttggatt aatattttat atcaactggc taccgaaatt aaccacccat taaatataaa
      301 atatttacat aacaaacttt attctttttc tttggcagat agagatgaga tttggacagc
      361 ttttattgct ttggagtctg atcaatgccc agcaattgaa cgattactaa cttggtgtca
      421 gaaatcaagt ggtcaagaaa atattgaacc cgaagcacta ttattgggtg caattgctgt
      481 tagttggcta tttacttcta ccgataaacg aagtagaaat ggctatatta atgcactggc
      541 tcatttatta tggaatagat tggaaattgc attggcgtta ttcaaggaat ttatagaggt
      601 taatgaccct tatgttatgg aaggtatttt atctgccatt cacggagctg ttgcttattc
      661 tgaaaattca tctggcttaa aagcacttgc attagagata gataatcaaa tatttaatca
      721 acctgaaaca gaagaaattt atcccaatgt tttggttcgt gattatgctc gccatattat
      781 tgaatactct ttgcaaaaag atgaatattc atcagatgat attgagataa tcagagaaag
      841 aattacgcca ccttatagaa gttcatttcc ccaaaactta ccaaccaatg aagaaattga
      901 taaaaaatat cattctgatg gacaaagaat cattatccgt tcaatgacaa ctgaatatgg
      961 tcgtggtatg tgtggatatg gtgattttgg cagatatact tttgaagcca aattccgaaa
     1021 ttgggagagt tataaattcg gcaatctcat caatgttgat ttattaagta attatgcttg
     1081 ccaaatgatt tttgagcaat ttggctatga tgacaagaag caccttgagt ttgataaaga
     1141 aactcgttca agatattggc gaagagatga tactaataaa attgagcgaa ttggcaagaa
     1201 atatcaatgg ttggctttgt atgaaatctt ggcaagggtg atggataatt ttcctacttt
     1261 ttctaatcgc tatgccgatg aaatagggct tgaatatatt actaatttgg acaactttta
     1321 tctacccaaa acccaaatta aaattgtacc gccaactaaa acagatgtat ttt
//
LOCUS       DANLZD010000235         1365 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.236, whole genome shotgun sequence.
ACCESSION   DANLZD010000235 DANLZD010000000
VERSION     DANLZD010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1365
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.236"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            322..576
                     /locus_tag="PXE26_002566"
     CDS             322..576
                     /locus_tag="PXE26_002566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595093.1"
                     /translation="MICHADPEYVKYNYAGLWEKGSDGTFFCNYQQFMPEVEAKESLR
                     KQEPELDDRYNEEEYSEEEYPDENDASDENDNYDETYNVF"
     gene            776..952
                     /locus_tag="PXE26_002567"
     CDS             776..952
                     /locus_tag="PXE26_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595094.1"
                     /translation="MATSSFDKRFVVKDPKAVKVLIEALQSPIKVVLPKKDLEKEEKE
                     ALCAIKKRLASMGL"
     gene            913..>1365
                     /locus_tag="PXE26_002568"
     CDS             913..>1365
                     /locus_tag="PXE26_002568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595095.1"
                     /translation="MCNQKTLSLYGLVKELGIEKTQLFLEQAFSCSRNKDVESFLLNK
                     AIRFETALAAATHLIINEQGDILAYFTLSFKEIEVEVSKSQLKKLTAGLSNDSHLRVL
                     LIGQIGKNEKVIDNPAKLPDILNHIYAQLYKAQRVLGGRVVILECENTP"
BASE COUNT          501 a          240 c          235 g          389 t
ORIGIN      
        1 ccgctactca acatacaggg atggttatct tgataacgct cacgatactc ttgagcaata
       61 gctagtaatt gctgattagt catataaagt ctccaataac ataataaacc tgaaaacgtt
      121 cttagtattc tggcaacatt tttataaata gaaaccaaaa actatattca aatcattttt
      181 agtttctgct caacattcct atgtttttcc atacactgaa gtaaatttac ctaaccctat
      241 tttgctgtga aaccaaaact cctcacgctt atccttagta gcatttcgat gtcgctcact
      301 tatgccaccc ctcaattagg gatgatatgc cacgctgatc ctgaatatgt aaaatacaac
      361 tacgccggac tttgggaaaa aggcagcgat ggcacttttt tctgcaatta ccagcaattt
      421 atgcctgaag ttgaagctaa agaatcacta aggaaacaag aaccagaact tgatgataga
      481 tataacgaag aggaatatag cgaagaagaa tatcctgatg aaaatgatgc cagcgatgaa
      541 aacgataact acgatgaaac ttataatgtt ttctagtatg tatatggaaa ccggaggaat
      601 ccgtgattga aaaggcttgc atttccaaat atagtctata tattgtggta attgaaagta
      661 tttctatgct aacaagcata aggctatgta atcgaaaacc acccacaagg cctaaataca
      721 gtattattac agccatgagt aaccatggta atttaaatat ttaaggagtt ctataatggc
      781 aacatcatca tttgataaac gctttgtagt caaagatcca aaagctgtca aggtattaat
      841 tgaggcatta caaagcccaa tcaaagtagt tttacctaaa aaagacttag aaaaagaaga
      901 gaaagaagca ctatgtgcaa tcaaaaaacg cttagcctct atgggcttgt aaaagaacta
      961 ggtattgaaa aaacacaact ctttttggag caagcatttt cttgcagtag aaataaagat
     1021 gttgaaagtt ttctacttaa taaagcaatc agatttgaaa ccgcattagc agcagcaaca
     1081 catttaatca ttaatgaaca gggcgatatt ttggcttact ttaccctctc ttttaaagaa
     1141 attgaggtgg aagtaagcaa aagccaatta aaaaagctaa ctgctggttt aagtaatgat
     1201 tcacatttaa gagtattgct tatcggtcaa atcggcaaaa atgaaaaagt aattgacaat
     1261 ccagccaaat tgccagatat tctaaatcat atctatgcac aactttataa agcacaacga
     1321 gttttaggtg ggcgagtcgt tatattagaa tgtgaaaata cgcct
//
LOCUS       DANLZD010000236         1287 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.237, whole genome shotgun sequence.
ACCESSION   DANLZD010000236 DANLZD010000000
VERSION     DANLZD010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1287
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.237"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            239..514
                     /locus_tag="PXE26_002569"
     CDS             239..514
                     /locus_tag="PXE26_002569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5595096.1"
                     /translation="MAKATVARRIKNAINGNFGDHKSLAGTGGLYEMRIATGAGYRIY
                     YAQQGNVIYILLHGGDKSTQQADIEKAKALWAELKTTGESNGNNTNQ"
     gene            492..815
                     /locus_tag="PXE26_002570"
     CDS             492..815
                     /locus_tag="PXE26_002570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL5595097.1"
                     /translation="METIQINEQAAEKHGLRPFDVAEFLTDEATIQAYLAEVLKEGDQ
                     DEFLEALNNVARARGMAELAKQTGLGRESLYKTLAKGSKPRFDTIQKILGAFNLVLIP
                     QVKNG"
BASE COUNT          458 a          239 c          239 g          351 t
ORIGIN      
        1 atccaaatct acccaaattg taattttatg ctacataatt taaaagcgtg aacaatgttc
       61 aatgatatga ataattgaaa ctgctctctt ttcaaaattt aaccacttga ttatttgtat
      121 cttaatggat acactaagca ataaatagaa taagaggctg gcaatgacag agcaaaccac
      181 taatcaaatc atcattaccg ataatttttc aaaatagctt gagaatttaa agaaccctat
      241 cgcaaaagca acggtagcaa ggcggataaa aaatgcgatt aatggcaact ttggcgatca
      301 taaatcttta gccggtacag gcggacttta tgaaatgcgg atagcaacag gagccggata
      361 tagaatttat tacgcacaac aaggaaatgt aatttatatc ttgttacacg gcggcgataa
      421 atcaacacag caagccgata tagagaaagc gaaagcatta tgggctgaat taaaaactac
      481 aggggaaagc aatggaaaca atacaaatca atgaacaggc agcagaaaag cacggtttac
      541 gcccttttga cgtggcggag tttttaaccg atgaggcaac tattcaagcc tatttagcgg
      601 aagtgttaaa agagggcgac caagacgaat ttttagaagc cttgaacaat gtggcaaggg
      661 caaggggaat ggcggagctt gccaagcaaa cagggctagg gagagagagc ctatataaaa
      721 ccctagccaa aggcagcaaa ccacgctttg acactattca aaaaattcta ggggcattca
      781 atttagtgct tattccacaa gtcaaaaatg gctaaaactt atcacttgct acctgccaaa
      841 acctcacatt caaatagccg ttgattgata ttaacggctt ttttattgct taattctgta
      901 ccaattacgc accgattgcg gatcaatacg gggcaagttt tcgcaaaacc ttaatgaaat
      961 atgaccgctt gtgattttgt acaaaacgac acaaaccaat gtataaaatc aaaacttgcc
     1021 acaaatggcg gaatgatatt aaatgcccca caaactagca gtatttctta atgacttttc
     1081 attttaaggg tacatttaag ggtatgttta acaagtctta aatgcacttc tcaataataa
     1141 caagcctcat agcatacaat tcaaactcgg ctggggacca tttaagcgtt gcatattgtc
     1201 tttcactgtc tcaaatttac tataaaatca agaacttaga ttattttata gtctcttatt
     1261 gtcttcttta gttgcattgt atcttag
//
LOCUS       DANLZD010000237         1270 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.238, whole genome shotgun sequence.
ACCESSION   DANLZD010000237 DANLZD010000000
VERSION     DANLZD010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1270)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1270)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1270
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.238"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..1056
                     /locus_tag="PXE26_002571"
     CDS             <1..1056
                     /locus_tag="PXE26_002571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595098.1"
                     /translation="KLILTFAATLVLSACGGSGSGGSSSTPNHPKPVLVPKTQNNLQA
                     QNVPQAQNASQAQNAPQAQNAPQAQNAPQVENAPQAQNAPQVENAPQAEVTPPVPQPQ
                     SQKIDGSFDKIGSVKLNKEAQTLELSRFTLVDKLGTPPKFDKVSGKKIIEEKDFLVLN
                     LSDINAEQLSGDFLIRRSDDLFYGYYHDTNGKNLVDAADKFSQYFVVYDEKRVNDNIS
                     DKLTATYRKKEGFVYGSNPHTKEFAARISKLGDVEIKFENGQAQGSIKDEKDGNAEIF
                     TIKGDTKQLEITPTESNRIIIAILDQNQKSYTPGMEKAIMETKFIDSKAGNSDQKYLI
                     GEAKSDNWQAIMVSEKK"
BASE COUNT          457 a          242 c          233 g          338 t
ORIGIN      
        1 aaattaattt taacatttgc tgcaacctta gttttaagtg cttgcggagg aagcggtagc
       61 ggaggttcgt cttcaacacc gaatcacccc aaaccagtac tagtaccaaa aacacaaaat
      121 aatcttcaag cacaaaatgt tcctcaggca caaaatgcct ctcaggcaca aaatgcccct
      181 caggcacaaa atgctcctca ggcacaaaat gctcctcagg tggaaaatgc tcctcaggca
      241 caaaatgctc ctcaggtaga aaatgctcct caagcagagg ttactccgcc tgtaccacag
      301 ccacaatcac aaaaaattga cggttctttt gataaaattg gttcagtaaa actcaataaa
      361 gaggctcaaa ctcttgagct tagtagattc actttggtgg ataaattagg cacaccaccg
      421 aagtttgata aagtaagcgg taaaaaaatt attgaagaaa aagattttct cgtattaaat
      481 ttgtctgata ttaatgctga acaactctct ggcgattttc ttattcgccg tagcgatgat
      541 ctattctatg gctactatca cgatacaaat ggcaaaaatc ttgtcgatgc tgccgataaa
      601 ttcagtcaat attttgtcgt gtatgatgag aaacgggtaa atgataatat ctctgataaa
      661 ttaacagcaa cttaccgtaa aaaagaaggc tttgtatatg gttcaaatcc acatactaaa
      721 gaatttgccg cacggatcag caaattgggg gatgtagaaa ttaaatttga aaatggtcaa
      781 gctcaaggaa gtataaaaga cgaaaaagat ggaaatgctg agatctttac tattaaaggt
      841 gatacaaaac agttagagat taccccaacg gaaagtaacc gaatcattat agcaatttta
      901 gaccaaaatc aaaaaagcta tactccagga atggaaaaag caattatgga aactaagttt
      961 attgattcaa aggctggtaa ttccgaccaa aaatacttaa tcggtgaagc aaaaagcgat
     1021 aactggcaag caataatggt tagcgagaaa aaataaagtt atcttttgct aaaaactgaa
     1081 ataaaaaggc tgagtccggg taatatcggc ctcagtcttt taaattgtag aaaatcatct
     1141 gtagaagatc aaacctaatc tgacagtccc ccgttttaaa ttaccgtgtc tgtcagatta
     1201 atttgagctt aaattctttt ccacccaaat ccgttttcca tcaagtaagg ttgccatcgg
     1261 tgttctgcca
//
LOCUS       DANLZD010000238         1214 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.239, whole genome shotgun sequence.
ACCESSION   DANLZD010000238 DANLZD010000000
VERSION     DANLZD010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1214)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1214)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1214
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.239"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..246
                     /locus_tag="PXE26_002572"
     CDS             <1..246
                     /locus_tag="PXE26_002572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
                     /protein_id="HDL5595099.1"
                     /translation="TATKKTLSDTLLKNLKYSPNAKPIADSNGLFILAQKKAKVWIYS
                     YISPKTGKRSTKNRIGSYPQMSLVEQSPQVFEQIARL"
     gene            298..885
                     /locus_tag="PXE26_002573"
     CDS             298..885
                     /locus_tag="PXE26_002573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SocA family protein"
                     /protein_id="HDL5595100.1"
                     /translation="MFDELKIAQATAYLLHKAGGTMEHIKVMKLLYLADRLSWQRYGY
                     SISNDEYYSLPYGPVLSNTLNLMRGEEASLYQKTSIWGEWIADKEDHKISLKKSVNTE
                     DEYFFDCLSESDTEILEEVFATFGNYKPFALVEYTHNPKYIPEWEDPQGRSKPISLST
                     LLTKLGKTPSEIESILEQQAEKGTMDNLFKGLGNA"
     gene            878..1195
                     /locus_tag="PXE26_002574"
     CDS             878..1195
                     /locus_tag="PXE26_002574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595101.1"
                     /translation="MLEIKRQVTILRPTNYGKEENHYKHLYILLTDPCFDGETGKGDM
                     ILSVNCSSIKDGKALDETCILKAGTHEFITRDSFIFYRHIKIDSLDEIKANIEAGYFI
                     QKP"
BASE COUNT          445 a          232 c          241 g          296 t
ORIGIN      
        1 actgcaacta aaaaaacact ttcagacaca ttactaaaaa atcttaaata ttccccaaat
       61 gcgaagccta tcgcagacag taacgggcta tttattcttg cacagaaaaa agcgaaagta
      121 tggatttata gctatatcag ccccaaaaca ggcaagcgaa gcacaaaaaa tagaatcggt
      181 agctatccgc aaatgagctt agtggaacaa tccccacagg tatttgaaca aatcgcacgt
      241 ctttaaaata ttaaattaag agaaagcact atttgcgatg tagcaggaga taaaacaatg
      301 tttgatgaat taaaaatagc ccaagcgacc gcctatttgc tacataaggc aggcggaaca
      361 atggagcata ttaaggtaat gaaattgctt tatcttgcgg atcgcttatc gtggcaaaga
      421 tacggctatt ctatttctaa tgatgaatat tattcattgc cttatggacc ggtattaagc
      481 aacacactca acctaatgcg aggagaagaa gcgagcttat accaaaaaac cagtatttgg
      541 ggcgagtgga tagcagataa ggaagatcac aaaatcagcc ttaaaaaatc cgtaaatacc
      601 gaagatgaat acttctttga ttgcctttca gagagcgaca ccgaaatttt agaagaggta
      661 tttgcgacct ttggaaatta taagccattc gccctagtgg aatataccca taaccctaaa
      721 tacattcccg aatgggaaga cccacaaggc agaagcaagc cgatttcttt aagcacgctt
      781 cttactaagc tagggaaaac gccaagcgag atcgaaagca ttttagagca acaggcggaa
      841 aaagggacaa tggataacct tttcaagggc ttaggcaatg cttgaaatca aaagacaagt
      901 aacgattctt agaccgacca actacggcaa ggaagagaac cactacaagc atttatatat
      961 tctgcttacc gatccgtgct ttgatggtga aaccggtaaa ggagatatga ttttaagtgt
     1021 aaactgctca agcattaaag acgggaaagc acttgatgaa acttgtattt taaaggcagg
     1081 aacacacgaa tttatcacac gggacagctt cattttctac cgccatataa aaattgattc
     1141 gttagatgag attaaggcaa atatagaagc cggttatttt attcaaaagc cctaattaat
     1201 gatgaagcct atca
//
LOCUS       DANLZD010000239         1202 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.240, whole genome shotgun sequence.
ACCESSION   DANLZD010000239 DANLZD010000000
VERSION     DANLZD010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1202)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1202)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1202
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.240"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            229..>1202
                     /locus_tag="PXE26_002575"
     CDS             229..>1202
                     /locus_tag="PXE26_002575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5595102.1"
                     /translation="MLFYLVSDSLTRLSLSNESLVDLGRITSIGNYPFLHNAKNAKFL
                     MVESAWQGYKNRWKYKIASYPDNPERTNEKLVRLVEKAKDKGIPTVFWNKEDSVHFDR
                     FIDSAKHFDHIFTVDQNAIARYREVVPATTTVNVGMFPVQPKIHNFQGFNFKHLAANF
                     VGSYSHHIHNKRRERQDMLFGAALKAGLPVTIFDRNSDRKSENYRYPKNSFNLNVQPN
                     VSYTETANIYRDYLVSLNINTVEDSPTMFSRRVVEILACGGILVSTPSMAIDNIFKEY
                     CHIVQSEDEAIELFQRLKRGASRDDLNKAIAGSEFVLSNFTWEHFLSQ"
BASE COUNT          393 a          203 c          225 g          381 t
ORIGIN      
        1 tgtatattca aaatactcag gatgaatttc atcataaatg gcatttcctc ccattcctag
       61 agttaaaggg gatagatcta tcggaaatag aaaagaccca ttggagagaa caacagagca
      121 aagatgtaaa agttattttg tattctcatg aatcaggtca tgcagctgaa cctaaggaaa
      181 tgattcccga gatattatcc gctgttgatc aactgatagc tagctaaaat gctgttttat
      241 ttggtatctg attctttaac taggctttca ttatcaaatg aaagcctagt tgatcttgga
      301 agaataacat ctataggaaa ttatcctttc ttgcataatg caaagaatgc taaatttctt
      361 atggtcgaat ccgcctggca aggctacaaa aaccgttgga aatataaaat tgcctcttat
      421 cctgataatc ctgaacgaac caatgaaaag ttggttcgtt tagtagaaaa agcgaaggat
      481 aaaggcattc caacggtctt ttggaacaaa gaagattctg tgcattttga tcgatttatt
      541 gattcggcga agcattttga tcatattttt accgtagatc aaaatgccat tgctcgttat
      601 agggaagtag tgcctgcgac aacaaccgtc aatgtcggaa tgttccctgt tcagcccaaa
      661 atccataact ttcaaggatt taattttaaa caccttgccg caaattttgt agggagttac
      721 agtcatcata tccacaataa gcgtagagaa agacaggata tgttgtttgg tgcagcactt
      781 aaagcaggtc ttccggtaac catctttgat agaaactctg atagaaaatc ggaaaattat
      841 cgttacccaa aaaatagctt taatttaaat gttcaaccta atgttagtta tactgaaact
      901 gctaatattt atcgtgatta tcttgtttct ttgaatatta atactgtcga agattcccct
      961 acgatgtttt ctcgcagagt cgttgaaata ttagcttgtg gaggaatatt agtctctaca
     1021 ccaagtatgg ctatcgacaa tatatttaaa gaatattgtc atatcgtaca aagtgaagat
     1081 gaggctatag aattattcca acgtttaaaa cgaggtgctt ctcgtgatga tttgaataaa
     1141 gcgattgcag gctctgaatt tgtattgagt aactttactt gggaacattt cttatcccaa
     1201 at
//
LOCUS       DANLZD010000240         1172 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.241, whole genome shotgun sequence.
ACCESSION   DANLZD010000240 DANLZD010000000
VERSION     DANLZD010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1172)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1172)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1172
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.241"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..830
                     /locus_tag="PXE26_002576"
     CDS             <1..830
                     /locus_tag="PXE26_002576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AlwI family type II restriction endonuclease"
                     /protein_id="HDL5595103.1"
                     /translation="RADAPLETISEAFKLDISKVYVALSKDLGITIKSPEQAATYVND
                     ERYRRFNTLIDKKFNDSVLIELLNCFEKRDDKRIEELVTDEAAIPTIFEYILGIIWYK
                     VSERQGNILDFMKLSLEANLLPKTHAAGGYADIIYEYEACTSYPKHSLLLEATLADGN
                     NQRRMEMEPVSRHLGDYRIRFNNPFDYSLFVSTYLDKNVISDFRYRKIIPYTRDEETI
                     TGMKIISMDTDSLKKIIENKVKYKYLYEIFDKYHEMPLETVDWHDGMIKEATGEYKS"
     gene            892..>1172
                     /locus_tag="PXE26_002577"
     CDS             892..>1172
                     /locus_tag="PXE26_002577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HDL5595104.1"
                     /translation="MKNRIEHPKIFISYAWGSQEHDEKVIALATNLKGDGIDVIFDKW
                     QLKEGNDTFKFMEKSVLDESITNVLILIDPIYAKKANERAGGVGTETQI"
BASE COUNT          442 a          145 c          240 g          345 t
ORIGIN      
        1 tcagggctga tgccccactt gaaactatat cagaagcatt caagttagat attagcaaag
       61 tatatgtagc tttaagtaaa gatttaggaa ttacaattaa gagtccggaa caagctgcaa
      121 cttatgtaaa tgatgaacga tacagaagat ttaatacttt gatcgataag aaatttaacg
      181 attctgtgct tatagagtta ctaaattgtt ttgagaaacg tgatgataaa aggattgaag
      241 aacttgttac agatgaggct gcaataccta ctatttttga atatattttg ggaattatat
      301 ggtacaaagt gagcgaaaga caaggaaata ttttggattt catgaagtta tcattagaag
      361 ccaatttatt gccgaagacc cacgcagctg gaggttacgc agacattata tatgaatatg
      421 aagcgtgcac ctcttatccg aaacattcat tattgcttga agcaaccctt gcagatggaa
      481 ataatcaaag aagaatggaa atggagcctg tttcaagaca tttaggcgat tataggatta
      541 gatttaataa tccgtttgat tacagcctat ttgttagcac atacttagat aaaaatgtaa
      601 tctcagattt tagatataga aagataattc catacaccag agatgaagaa accattacag
      661 gaatgaagat tatttcaatg gacacagatt ctcttaagaa aataattgag aataaggtta
      721 agtacaagta tctgtatgaa atatttgata aataccatga aatgccatta gagactgtag
      781 attggcatga tgggatgata aaagaggcta ctggagagta taagtcatag tgattataag
      841 atagtgagaa agaatactta ttttgaaagg aatacatggg aattgataca gatgaagaat
      901 agaattgaac atcctaagat ttttatttca tatgcttggg gatcacagga acatgatgag
      961 aaggttattg ctttagctac aaatcttaaa ggagatggta tagatgtcat ttttgataaa
     1021 tggcagctaa aagaaggcaa tgataccttt aaattcatgg aaaaaagtgt tttagatgag
     1081 agtattacca atgtactgat tcttatagat cctatttatg caaagaaagc aaatgaaaga
     1141 gccggtggcg taggtacaga aacacagatt at
//
LOCUS       DANLZD010000241         1044 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.242, whole genome shotgun sequence.
ACCESSION   DANLZD010000241 DANLZD010000000
VERSION     DANLZD010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1044)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.242"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            202..450
                     /locus_tag="PXE26_002578"
     CDS             202..450
                     /locus_tag="PXE26_002578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595105.1"
                     /translation="MISGEKMTWESLGASAIGGAIGGGIGATMKAGAVTASTLSALGG
                     GMGEGLYKSTSQGIKNSIGIKASCNQSGSDYGDGCDYQ"
     gene            462..665
                     /locus_tag="PXE26_002579"
     CDS             462..665
                     /locus_tag="PXE26_002579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595106.1"
                     /translation="MKIQFPISYQEFRENYFEKKPLLMKGAISQKDLLSWKSINEILP
                     RCDLISEDAIKVMHKGKRAHKKD"
     gene            704..>1044
                     /locus_tag="PXE26_002580"
     CDS             704..>1044
                     /locus_tag="PXE26_002580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_046701250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5595107.1"
                     /translation="MKITHCKLKKSLQKKLLEFFVAEVTARTAADLLGIQPNTAALFY
                     HKIRLVIEHHLALEAHEIFEGKIEVDESYFGGHRKGKRGRGAAGKVAVFGLLKRQGKV
                     FTKYQIRNANAG"
BASE COUNT          344 a          137 c          252 g          311 t
ORIGIN      
        1 taaagaagat tgtaaaaaat aaaaatgtac aagatgttat tgaggctata gttctaatag
       61 tatttgttgt aattataaac atcatagagg aatatctctt atgaaagagt taaaaattga
      121 ggattgccaa tttgtttcgg caggcttgca cttgttattg taggagctgt tgctggagct
      181 gcatattatg ttgggaatgg tatgatttct ggggaaaaaa tgacttggga gagtttggga
      241 gcatcagcta taggtggggc tattggtggc ggtattggag caacaatgaa agctggtgcg
      301 gtgacagcgt caaccttatc tgctttaggt ggtggtatgg gggagggctt gtataaaagt
      361 acttctcaag gtatcaaaaa tagtattggt ataaaggcga gttgcaatca atcaggttcg
      421 gattatggtg atggatgtga ttatcaataa gagagtatat tatgaaaatt caatttccaa
      481 tttcttatca agaatttcgt gaaaactatt ttgagaaaaa accactttta atgaaaggag
      541 caatatctca gaaagattta ctttcttgga agtcaataaa tgaaatatta cctcgctgtg
      601 atttaatttc tgaggatgca attaaggtaa tgcataaagg gaaaagggct cataaaaaag
      661 attaggggct gtagtagatt agcatcactg ctatactaca aaaatgaaga taacccattg
      721 taaattaaag aaatctttgc agaaaaagct tcttgaattt tttgttgctg aagtgaccgc
      781 tagaaccgct gctgatttat taggtattca acccaatacg gcagccctgt tttaccacaa
      841 aattaggctg gtcattgaac accatttagc ccttgaagct catgaaattt ttgagggaaa
      901 aattgaggta gatgaaagct attttggtgg tcatcgcaaa ggaaaacgag ggcgaggtgc
      961 ggctgggaaa gtcgctgtat tcggtttgtt gaagcgtcaa ggaaaggtgt ttacaaaata
     1021 ccaaatcaga aacgctaatg ccgg
//
LOCUS       DANLZD010000242          982 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.243, whole genome shotgun sequence.
ACCESSION   DANLZD010000242 DANLZD010000000
VERSION     DANLZD010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..982
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.243"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(35..>982)
                     /locus_tag="PXE26_002581"
     CDS             complement(35..>982)
                     /locus_tag="PXE26_002581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595108.1"
                     /translation="YVFHLRSLKHIKNLESNSYLDEEGRDTVNKYKAFFSIFEAEIRD
                     ATCICDNKIVTINGEVCCDIKEVARKIVIEFLNEVDIGNKVKFYYPDERHELFVELLI
                     VLATLRIYRNRNIFFFEKGFFNFFPEFITILGTGAFNGFLDFPSLVGKVFPEIIDTIN
                     EGLDLDIAIENFEVLSQEEMTECMGLYEQALIKKAEEGEIGLLNVDEINSFYEDNSEL
                     ILLAKQPMVEEIIPKPDSKASSAILKFFDSNSNILIAKLKESGLQLSAVALQNDQNIA
                     RVANVVYNLLPGMVRIFVSYDTVENFLLNNRQWLINKLV"
BASE COUNT          324 a          194 c          118 g          346 t
ORIGIN      
        1 ttatattgtt tatccatagt tcttcccctc caaattaaac taatttatta atcaaccatt
       61 ggcggttatt taataagaaa ttttctacgg tatcgtaact tacgaaaatt cttaccatgc
      121 ccggcaataa gttataaacg acatttgcta ctcgtgcgat attttggtcg ttttgtaatg
      181 ccacagcact taattgcaaa ccactttctt ttaatttagc aattaagata tttgagtttg
      241 aatcaaagaa ttttagaatt gcagaggagg ctttgctatc tggtttaggg attatctctt
      301 caaccatagg ttgtttagca agtaagatta gctcactatt atcttcataa aagctattta
      361 tttcatcaac atttaataaa ccaatttcgc cttcttcagc tttcttaatg agagcctgct
      421 catataaacc catacattca gtcatttctt cctgactcaa cacttcaaag ttctcaatcg
      481 caatatctaa atctaaaccc tcatttatcg tatcaataat ttctggaaaa acctttccta
      541 ccaaactagg gaagtctaaa aatccattaa acgcaccagt cccgagaata gtgataaatt
      601 cgggaaaaaa gttaaaaaac cccttttcaa agaagaatat atttctatta cgatatattc
      661 ttaatgttgc tagaacaatg agcagctcta caaaaagctc atgtctttca tctgggtaat
      721 aaaacttaac tttattacca atatccactt catttagaaa ttctataaca attttccttg
      781 ctacctcctt aatatcacag cacacctcac cattaattgt tacaatttta ttgtcacaaa
      841 tacatgttgc atctcgaatc tctgcttcaa aaatagagaa aaatgccttg tatttattta
      901 ccgtatctct tccttcttca tctaaataac tgttagattc tagatttttg atatgtttca
      961 aagatcttaa gtgaaagaca ta
//
LOCUS       DANLZD010000243          976 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.244, whole genome shotgun sequence.
ACCESSION   DANLZD010000243 DANLZD010000000
VERSION     DANLZD010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..976
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.244"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            3..>976
                     /locus_tag="PXE26_002582"
     CDS             3..>976
                     /locus_tag="PXE26_002582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlwI family type II restriction endonuclease"
                     /protein_id="HDL5595109.1"
                     /translation="MSNKSIPYQSFCWVIGTTSFRTAKLNLKIEAQLLLLDEFFNEVI
                     KESSWNWNNELQEKYYDFMKDRAFLTGEAKRKDKDAREKTSGLVDIGLITEDRLITDA
                     GRELLKVTSSGDFETNNVFNINRDSFIYLKQLLKTSIDVSGSIVRPFIAVVKCLTELE
                     FLSYDEFTYFVPLIRDDESAKQIISDIKLYREGKILPEEIIYKRLMQMENYKLAQEEF
                     IASDVDENLICLVGMNRKSRNYDKPYYKLYENLKKVFLDGENIYESLLNSAKNINQKP
                     GILWRSLLFKTTNIGVVRKNGKSSIHKQCPFINCKNETELKEVFFKYL"
BASE COUNT          385 a          112 c          187 g          292 t
ORIGIN      
        1 aaatgtctaa taaaagtatt ccatatcaaa gtttttgttg ggttatagga actacaagtt
       61 ttagaactgc aaaactaaat ttaaaaatcg aggcacagtt gttgcttctt gatgagtttt
      121 ttaatgaggt cataaaggaa tcaagttgga actggaacaa tgaattgcaa gaaaaatatt
      181 atgattttat gaaagataga gctttcctaa caggagaagc aaaaagaaaa gacaaagatg
      241 ccagagaaaa aacatcagga ttggttgata ttggtttaat tacagaagat agattgatta
      301 cggatgcagg aagagaactc cttaaagtaa caagtagtgg ggattttgaa accaataatg
      361 tgtttaatat taatagagat agctttatct atctaaaaca gcttcttaaa acgagtatag
      421 atgtaagtgg tagtatcgtt agaccgttta ttgcggttgt aaagtgcctg acggaacttg
      481 agtttttaag ttatgacgag tttacttatt ttgttccgct aattagagat gacgaaagtg
      541 caaaacaaat catatcggat attaaattat atcgagaagg taaaatttta ccggaagaaa
      601 taatttataa gaggcttatg caaatggaaa actacaaact tgcacaagaa gaatttatag
      661 cctctgatgt tgatgaaaat ctaatatgtt tagtgggaat gaatcgtaaa agcagaaact
      721 atgacaagcc gtactataaa ttgtatgaga atttaaagaa ggtatttctt gatggcgaaa
      781 acatttatga atcgctatta aattctgcaa agaatataaa tcaaaaacct ggaatattgt
      841 ggagaagttt actctttaaa acaaccaata ttggtgttgt aagaaaaaat gggaagtctt
      901 caattcacaa acaatgccca tttataaact gtaaaaatga aacagaacta aaagaagtgt
      961 ttttcaaata tttaca
//
LOCUS       DANLZD010000244          966 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.245, whole genome shotgun sequence.
ACCESSION   DANLZD010000244 DANLZD010000000
VERSION     DANLZD010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 966)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 966)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..966
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.245"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            164..682
                     /locus_tag="PXE26_002583"
     CDS             164..682
                     /locus_tag="PXE26_002583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein"
                     /protein_id="HDL5595110.1"
                     /translation="MQKKLFIAQIKQNLSELNVFSTDNIFLNSPYFSQQTGLVSVFIA
                     EIEKTVELLLNQTEVLYSEFYAEKLVKQVDALKNAVEKIQSKPESAQFHSSYQFSPNI
                     HRLAPNKRLQEYRKALRALNEKISWLVEQNLNTQNEATKQTLQNQITETEYRKMKCLK
                     AIEDLEQELLFK"
     gene            complement(686..759)
                     /locus_tag="PXE26_002584"
     tRNA            complement(686..759)
                     /locus_tag="PXE26_002584"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(725..727),aa:Cys,seq:gca)
     gene            complement(775..850)
                     /locus_tag="PXE26_002585"
     tRNA            complement(775..850)
                     /locus_tag="PXE26_002585"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(815..817),aa:Gly,seq:gcc)
BASE COUNT          339 a          178 c          164 g          285 t
ORIGIN      
        1 tagttcacat ttttgatatt taatttcttt tttgcctgtt tttcacgcac gaattgtaag
       61 aaattagtaa aaatcaaccg cttgtacgca aagtgttttg ctttaaaata gaagttatat
      121 gaaataaaat tcacttaaat tttctttatt gataacatca accatgcaaa aaaaactttt
      181 tatcgcccaa ataaaacaaa acctctcgga attaaatgta ttttcaacgg ataatatttt
      241 tctgaattca ccctatttct cacagcaaac cggtttggtg agtgtgttca ttgctgaaat
      301 tgaaaaaaca gttgagctat tattgaacca aactgaggtg ttatatagtg aattttacgc
      361 tgaaaaattg gttaaacaag ttgatgcatt aaagaatgcc gtagaaaaaa tccaaagtaa
      421 gccagaatca gctcaattcc attcttccta tcaattttct ccaaatattc atcgtttagc
      481 gcccaacaaa cgcttacaag aataccgtaa agcgttacgt gcattgaacg agaaaattag
      541 ctggttagtt gagcaaaatt taaatacgca aaatgaagca actaaacaaa ccctgcaaaa
      601 tcaaattaca gagacagaat atcgcaaaat gaaatgttta aaagcaattg aagatttaga
      661 acaagagttg ctatttaaat agtgatggag gcgtgtcccg gagtcgaacc gagctacatg
      721 gatttgcaat ccagtgcata accgctttgc taacacgcca taagatttgg aaattggagc
      781 gggaaacgag gctcgaactc gcgaccccga ccttggcaag gtcgtgctct accaactgag
      841 ctattcccgc atctgaattc ccacaacatt gcgctgtgga acgaggtgca ttttacggat
      901 ttatcatttt atgtcaatgc taaatttaac attctagatt caaatgctga aaaaaaactc
      961 actatt
//
LOCUS       DANLZD010000245          964 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.246, whole genome shotgun sequence.
ACCESSION   DANLZD010000245 DANLZD010000000
VERSION     DANLZD010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.246"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            223..964
                     /locus_tag="PXE26_002586"
                     /pseudo
     CDS             223..964
                     /locus_tag="PXE26_002586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524908.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication protein"
BASE COUNT          343 a          167 c          151 g          303 t
ORIGIN      
        1 gactcctcta atagtccact cttgttccat tttggaacat ttttgtatat tatttcgcct
       61 tttctttctc attgtgttct atgtaggcaa cagcattttt tgcaaagtga tcgacgagaa
      121 cattcattac ttcagtccat tttacaggtc ttcctatctt cattccaact tccatcgcta
      181 atctttctat cttgagtttt ttctctaatt taatattgaa cagagcttta tgaaatggtt
      241 gatatagaac aaacgtcagt tgattggatt gatgtaactt attcagctca tattgattcg
      301 gaatctatcc aaaaacaact tatctctttt ttccaaaaca tccatttagg acaaacacgt
      361 cgtacaagac ataacaaaga atatgacaca acggcagaat ggaattcagg ttcagaacac
      421 cgtattttaa aagtttatct aaaaggtaat gaagttcaaa aaagactaca agaagcccag
      481 cacgacttca aaaaatcacc aagtaaaaag tatctgcaaa actcaattca agtattaagt
      541 aatccaaatc tcattgaatt ttcaaaaaaa tgtgttcgtt ttgaagcaag attaaaacaa
      601 cgttatttag ataaacatca aatcccacgc aatttatttg acttaattaa atatcagaga
      661 gattacgaag agcagggtag aagcctgatt aaagacctat ggcaagacgc attcaaagac
      721 attattaagg ctgtcgggga aagcaatatg aatatttaca acagagatca aattcagcgt
      781 ttattacgga aaaattattt ttcaatcact ccaaaaggaa atatgagcta tgcaaaggct
      841 gatcgtttat tcagctttta taagaattta ctaagtgatg gctatagaga aacgctagat
      901 tctatgccaa gaaacacatt ttggagatat gaaaaggatc ttatggccgt tggtttaact
      961 aaaa
//
LOCUS       DANLZD010000246          948 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.247, whole genome shotgun sequence.
ACCESSION   DANLZD010000246 DANLZD010000000
VERSION     DANLZD010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 948)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 948)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.247"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            17..>948
                     /locus_tag="PXE26_002587"
     CDS             17..>948
                     /locus_tag="PXE26_002587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HDL5595111.1"
                     /translation="MKLTKIVLSVVAVIGAVAVGGSWYTGKQVEEKYQELVVQANNQL
                     KQLSGEFGANIELKDVQIDRHFFISNAKYRLEVDLGNGKKLDFVGNDKLHHGPLPLNR
                     LAKLNLAPVMMSAESKLQAPEALKKLMGEHIGTGFSNISYSGDVEGHFDISPIKHSDE
                     TGHIETTPIKVQYSYDQKLKGVDSTVELESLKIKAEEFDFQIQGIVYDVQTENNESYP
                     NLTLGKGSGKINAIEFKSKDGKLSQIKDVVVKGDNLLKGDRLISTGDLEAATFNIEGV
                     EMGKLKMDMAYDLDAKLTNDITPLLSNPQTLENE"
BASE COUNT          335 a          131 c          202 g          280 t
ORIGIN      
        1 aataaaagga aacagaatga aattaacaaa aattgttctt tcagttgtag cggtaattgg
       61 tgctgttgca gttggcggaa gttggtacac aggtaagcag gttgaagaaa aatatcaaga
      121 attggttgtt caagctaata accaacttaa acaactgagt ggcgaatttg gtgcgaatat
      181 tgagcttaaa gatgtgcaga tcgatcgcca tttctttatc tctaatgcga aatatcgttt
      241 agaagtggat ttgggtaatg gtaagaaatt ggactttgtt ggtaatgata aacttcatca
      301 cggtccgcta ccgcttaatc gtttagcgaa acttaattta gctcctgtaa tgatgagtgc
      361 ggaaagcaaa ttacaagctc ctgaagccct taaaaaattg atgggtgaac atattggcac
      421 cggtttttct aatatcagct attcgggcga tgtggaaggg cattttgata tttccccgat
      481 taaacatagt gatgaaacag gtcatattga aaccacgcca atcaaagtgc aatatagcta
      541 cgaccaaaaa ttaaaagggg ttgatagcac tgttgagcta gaaagtctta agataaaagc
      601 agaagaattt gattttcaaa ttcaaggtat agtttatgat gttcaaacag aaaataatga
      661 aagttatcct aatttaactt taggcaaagg tagtggaaaa attaacgcta ttgagtttaa
      721 gtctaaagat ggcaaattat ctcaaattaa agatgttgtg gtgaagggcg ataatctatt
      781 aaaaggcgat cgtttaattt ctaccggaga tttagaggca gccactttca acattgaggg
      841 tgttgaaatg ggtaaattaa aaatggatat ggcatacgat ttagatgcta aattaaccaa
      901 tgatattacg cctttattat ctaatcctca aacattagaa aatgaaaa
//
LOCUS       DANLZD010000247          932 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.248, whole genome shotgun sequence.
ACCESSION   DANLZD010000247 DANLZD010000000
VERSION     DANLZD010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 932)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 932)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..932
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.248"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(169..897)
                     /locus_tag="PXE26_002588"
     CDS             complement(169..897)
                     /locus_tag="PXE26_002588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5595112.1"
                     /translation="MKSFDKVWFSAKELEELDLPDLPKQATNITRKALKELWIKRDAV
                     GVKGGGNEYHITSLPRKAQEALGFKSGINAIKDSIVREITPEEQNKGSELSGTVLNNI
                     ISMIDSFASIKVSAGFGSFNEGVTKPDGQEPYADSLLHTLGVNAKKCAVFWASGDSMY
                     PTIDNGDQLLVDLSRNEIRGDNNIYIVQNGDSVWVKRVKLLWDGVELISDNREEYELI
                     KITADQAQNLQIIGQVVHIGHSLV"
BASE COUNT          259 a          196 c          159 g          318 t
ORIGIN      
        1 aatttgggcg gaaaaataac ggcgagcccc gtgaatacaa gggttcgccg ttattgtttg
       61 gttggagcta tgcaaaaaac aaaatgagca ggattagaaa aaaacgagca gtttttgcgt
      121 tattttttgc ataggtttga tcggttttaa aactatttta aatctgtttt aaactaaaga
      181 atgcccgatg tgtaccactt gcccgatgat ttgtaggttt tgggcttggt ctgctgtaat
      241 ctttattaac tcgtactctt ctcggttgtc tgaaataagc tctacaccgt cccatagcag
      301 ttttacacgc ttaacccaaa cactgtcgcc gttttgtaca atgtaaatat tattgtcgcc
      361 tcgtatctca ttacgactta aatcaactag tagctggtcg ccattatcaa tagtcggata
      421 catcgagtct ccacttgccc aaaaaacagc acacttcttg gcattaacac caagcgtatg
      481 caacaagcta tcagcataag gctcttgtcc atcaggtttt gttacacctt cattaaagct
      541 cccaaagcct gcagatactt taatagatgc aaaactatca atcattgaga ttatgttatt
      601 caaaacggtg cctgataatt cagatccttt gttttgctct tcaggtgtaa tctctcttac
      661 tatgctatcc ttgattgcat ttattccact tttaaatccg agtgcttctt gggctttacg
      721 aggcaatgaa gttatgtgat attcattccc cccacctttt actccaactg catcacgttt
      781 tatccagagt tcttttaatg cctttcttgt aatgtttgtt gcttgctttg gaaggtcagg
      841 caaatccaat tcttctagtt ctttggctga aaaccaaact ttatcaaatg atttcataat
      901 taaccccttc ttaatcaaaa atgattttaa aa
//
LOCUS       DANLZD010000248          929 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.249, whole genome shotgun sequence.
ACCESSION   DANLZD010000248 DANLZD010000000
VERSION     DANLZD010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 929)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 929)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..929
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.249"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..179
                     /locus_tag="PXE26_002589"
     CDS             <1..179
                     /locus_tag="PXE26_002589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5595113.1"
                     /translation="RPRRVFERSAEKKKIHNLISRAHYDMATNEDSASEHLELFGEDI
                     AEDSFDYPKPEKLI"
     gene            186..257
                     /locus_tag="PXE26_002590"
                     /pseudo
     CDS             186..257
                     /locus_tag="PXE26_002590"
                     /inference="COORDINATES: protein motif:HMM:NF013704.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            267..785
                     /locus_tag="PXE26_002591"
     CDS             267..785
                     /locus_tag="PXE26_002591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5595114.1"
                     /translation="MNRRYIGIEIGEHAKTHVVPRLKKVIEGEQGGISKAVNWQGGGS
                     FRFCELGEEVFDAFGSLNPNIRFDDLAAHIWYLENHFPLQKNSEKSPLVGTFNGKAYY
                     LLYNGILGDKRPQSGNVLTRKLMAELPYFAEFIQQGMDIVVYGEACRLGEVQLAEKKI
                     TFKQIPYDVMSR"
     gene            801..>929
                     /locus_tag="PXE26_002592"
     CDS             801..>929
                     /locus_tag="PXE26_002592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III restriction endonuclease subunit R"
                     /protein_id="HDL5595115.1"
                     /translation="MKLKNYQNEALNRVSHYFSACLQSDAKTAFSQIQPEYSYKIPS"
BASE COUNT          309 a          156 c          197 g          267 t
ORIGIN      
        1 ttcgaccaag gagagtattt gagcgaagtg cggaaaagaa aaaaattcat aacttaatta
       61 gcagagctca ttatgatatg gcaacaaatg aagactctgc tagtgaacat ctagaattat
      121 ttggggagga tattgcagaa gattcatttg attatcctaa acctgaaaaa ttaatctaat
      181 ttgtattaga agcatcgact gaaccatatg atctcgtcct cgatagcttt cttggctcag
      241 gtacaactgc agcagttgct cataaaatga accgtcgtta tatcggtatt gagattggcg
      301 aacatgctaa aacccatgtt gtcccacggt tgaaaaaagt aattgaaggt gagcaaggcg
      361 gtatttcaaa agcagtaaat tggcaaggtg gtggatcgtt tcgcttttgt gagttaggcg
      421 aggaagtatt tgacgcattc ggttcactta atccgaacat tcgttttgac gatttagccg
      481 cccatatttg gtatttagaa aatcatttcc ctttgcaaaa aaacagcgaa aaatcaccgc
      541 ttgtcggcac tttcaacggc aaagcctact atttgttata taacggaatt ttaggcgata
      601 aacgtccgca gagtggtaat gttctgacac gaaaattaat ggcggagtta ccatactttg
      661 ctgaatttat tcaacaggga atggatattg tggtatatgg cgaagcgtgc cgtttaggag
      721 aagtgcagtt agctgaaaag aaaattacat ttaaacagat tccatatgat gtaatgtctc
      781 gttaatagta ggagaaaaaa atgaaattaa aaaattacca aaatgaggca ttaaaccgtg
      841 tcagccacta tttttcggct tgtttgcaat ctgatgcaaa aaccgcattt agccaaattc
      901 aacctgaata tagttacaag atcccaagt
//
LOCUS       DANLZD010000249          905 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.250, whole genome shotgun sequence.
ACCESSION   DANLZD010000249 DANLZD010000000
VERSION     DANLZD010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 905)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 905)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..905
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.250"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..527
                     /locus_tag="PXE26_002593"
     CDS             <1..527
                     /locus_tag="PXE26_002593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HDL5595116.1"
                     /translation="LLVQTYIKEGEDAEYHKRYKCKIRKPWYKVPSVYSTNIGMLKRS
                     HEAPKLILNKLGAYTTDTAYRIKSNKFQDEILVCCFLNPLTMILSELNGRFYGGGVLE
                     LVPSEIRNLYIPIIENIDFNIEELNEEVKAGNIENVIRNNGEKILTNLGFSQEDNAML
                     MSIWKKLKNNRLRR"
     gene            complement(572..>905)
                     /locus_tag="PXE26_002594"
     CDS             complement(572..>905)
                     /locus_tag="PXE26_002594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5595117.1"
                     /translation="SKYSEWFVSLSGEVFEGGFIARGTKVQKQIPIPNINFNNPAERL
                     THDEISDLQKELNQLFSKIEISNERYGVMYRRMFDDKKKKLDDKIKELYNLNELDDII
                     PSIEDLYS"
BASE COUNT          322 a          118 c          148 g          317 t
ORIGIN      
        1 ctttacttgt acaaacttat ataaaagaag gtgaggatgc ggagtatcac aaaagatata
       61 aatgcaaaat aagaaaacca tggtataaag ttccatcggt ttattcaact aacataggaa
      121 tgctgaaaag aagtcatgaa gcaccaaaac taatattgaa taaattgggg gcttatacta
      181 ccgatactgc gtatcgtata aagtcaaata aatttcaaga tgagattctt gtgtgctgtt
      241 tcctaaatcc attaactatg attttatctg agttaaatgg aaggttttat ggtggaggcg
      301 tattagaatt agttccttct gaaattagaa atctatatat tccaataatt gagaatattg
      361 attttaatat agaagaatta aatgaagaag ttaaagctgg aaatatagag aatgtcataa
      421 gaaacaatgg tgaaaaaatt ttaacaaatt taggcttttc tcaagaagat aatgccatgt
      481 taatgagtat atggaaaaag ctaaaaaata acaggttaag aagatagctt gaaaaggttg
      541 tgtggtttat acatcacaca accttttaga attaactata tagatcctct atagatggta
      601 taatgtcatc taattcgttt aggttgtata gttcttttat cttatcatct aattttttct
      661 tcttatcatc aaacattctt ctatacataa ccccatatct ttcattagag atttctattt
      721 ttgagaaaag ttgatttaac tctttttgta aatctgatat ttcatcgtga gttaatcttt
      781 ctgctgggtt attgaagttt atgttaggga ttggtatttg tttttggact tttgttcctc
      841 tagcaataaa gccaccctca aatacttctc ctgataaaga aacaaaccac tctgaatatt
      901 tagat
//
LOCUS       DANLZD010000250          894 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.251, whole genome shotgun sequence.
ACCESSION   DANLZD010000250 DANLZD010000000
VERSION     DANLZD010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 894)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 894)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..894
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.251"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            13..639
                     /locus_tag="PXE26_002595"
     CDS             13..639
                     /locus_tag="PXE26_002595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL5595118.1"
                     /translation="MTKIKFYGNLKKFGSEFSLEVKDTAEAIRALCTQISGLREALRD
                     GVYKVRIGKQYLDPSALEKGLFYCLKKGQTIHFTPVIKGAKSGGVFNFVLGAALIGAA
                     FFTGGASIAAWGAGAKMMGMLGASMLLGGVSQMLTKMPKAPTMGNETEKESSTAFSNL
                     NNLVTQGKPVPLAYGLIRTGSLVISQGVETITIKENQPASNKKTGFRK"
     gene            688..>894
                     /locus_tag="PXE26_002596"
     CDS             688..>894
                     /locus_tag="PXE26_002596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5595119.1"
                     /translation="MNLTKAESNLNAKITEEKKARVDADKVNADKLTDITSRVANAES
                     TITNFQSTKANKSEVASLAQSSLQA"
BASE COUNT          297 a          167 c          206 g          224 t
ORIGIN      
        1 taatggtgag tcatgactaa aattaaattt tacggcaatt taaaaaaatt tggtagtgaa
       61 tttagcttag aagttaaaga tactgccgaa gctatccgag ccttatgtac acagattagc
      121 ggattgcgtg aggcattacg agacggtgtt tataaagtcc gtatcggcaa acagtattta
      181 gacccgtcag cccttgaaaa agggcttttt tattgtctga agaaagggca aaccattcat
      241 tttacccctg ttatcaaagg agcgaaaagc ggtggcgtgt ttaattttgt tttaggtgca
      301 gccttgatcg gagccgcatt ttttactggc ggtgcttcta ttgcggcttg gggagctgga
      361 gcaaaaatga tgggtatgtt aggggcttcg atgttactag gaggagtttc ccaaatgctc
      421 accaaaatgc caaaagcccc cacaatgggt aatgaaacag aaaaagaaag ctcaacggct
      481 ttttcaaatt taaataactt ggtgactcaa ggcaaacctg tgccgttggc ttatggctta
      541 attcggaccg gctcgcttgt gatatcgcag ggagttgaga cgatcaccat taaagaaaac
      601 caaccggcaa gcaacaagaa aacaggcttt agaaaataag ggataattac cgattcagca
      661 caagcacagc aacttaatca gttatctgtg aacttgacca aagcagagag caatttaaat
      721 gccaaaatca cggaagaaaa aaaagctcgt gttgatgcag ataaagtgaa tgcagataaa
      781 ctcacagaca taacaagccg tgttgcaaat gcggaatcaa ctattaccaa tttccaatca
      841 accaaagcga ataaaagtga ggttgcgagc cttgcacaaa gttcgttgca ggca
//
LOCUS       DANLZD010000251          879 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.252, whole genome shotgun sequence.
ACCESSION   DANLZD010000251 DANLZD010000000
VERSION     DANLZD010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 879)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 879)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..879
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.252"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..624
                     /locus_tag="PXE26_002597"
     CDS             <1..624
                     /locus_tag="PXE26_002597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDL5595120.1"
                     /translation="NTVLNTLQCDYVLFSSEDNYQVIINLKKADYPKNEANFITMTLN
                     KKFGDAKFSGANHYLRCASFFNKKSTNNNEKSVLVDFTNTKTEEDNKCYFDNLLSSYK
                     NNNVKLEPLDIKIIDELGDDKAVIAQKEIQAEIALCKRIFKQLDWSAVDFRIVKRLYR
                     KGFSENEIAVALVRFTDFEDRHCDSHDYLTRTITKAIQNYQQCSKAC"
BASE COUNT          353 a          132 c          139 g          255 t
ORIGIN      
        1 aacacagttt taaacacact acaatgcgat tatgtgctgt tttcttctga agacaactac
       61 caagtcatca tcaatctaaa aaaagctgat taccccaaaa atgaagcaaa tttcattaca
      121 atgactttaa acaagaaatt tggtgatgca aaattttccg gtgcaaacca ttacttaaga
      181 tgtgccagct tcttcaacaa gaaaagcaca aacaacaatg aaaaatcagt tttagttgat
      241 tttacaaaca caaagacaga agaagacaat aaatgttatt ttgataactt attatctagt
      301 tataaaaata acaatgtaaa acttgagcct ttagacatca aaattattga tgagcttgga
      361 gatgataaag cagttattgc acaaaaagaa attcaagcag aaattgcttt gtgtaaacgt
      421 atattcaaac aattagattg gtctgctgtt gattttagaa ttgttaagcg tctgtacagg
      481 aaaggatttt cagaaaatga aattgctgtt gcacttgtca gatttactga ttttgaagac
      541 agacattgtg attcacatga ttatttgaca agaacaatca caaaagccat tcaaaactat
      601 caacaatgct caaaagcttg ttagatgtta taaggaaagt taaaaatcaa caaaagattt
      661 gacaaattta tataaaatcc ttattatata tgaaaaggaa gcgtagcctt aaaacgcaaa
      721 tgtgggttag cacatggtca atctgaaact aatctaggat atttaaggtc tagcagatgg
      781 caagcatcag aaaaacttga aactaatcta ggatatttaa ggcctagcag atggcagaca
      841 tcagaaaaac taacacttaa attttatatt tattaagcc
//
LOCUS       DANLZD010000252          867 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.253, whole genome shotgun sequence.
ACCESSION   DANLZD010000252 DANLZD010000000
VERSION     DANLZD010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 867)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.253"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..320)
                     /locus_tag="PXE26_002598"
     CDS             complement(<1..320)
                     /locus_tag="PXE26_002598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015483985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5595121.1"
                     /translation="MKQVMNPINTPTQRFKDGNPATGEYGTIVTAEFLNNVQDSVINT
                     QQELHSVLAEAGIEANDEQVNQVAKAIKKIAGDATRDNFNALANPDGYKHIGRCKSVA
                     ELRT"
     gene            complement(317..>867)
                     /locus_tag="PXE26_002599"
     CDS             complement(317..>867)
                     /locus_tag="PXE26_002599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2313 domain-containing protein"
                     /protein_id="HDL5595122.1"
                     /translation="LLPPVSYDPNGRWLALSLEVEGRELDRIDARAKTLIDAVDVSTG
                     IFIDDWERVCGLTANSSLPLETRIERVIAKLNQLGGLSIGYITQVAKELGYCIKISEP
                     QPFIAGLSRAGDMLWHKDIMWTFFVDICNPTDDYKRFRASVSMAGDALMGRYKDPILE
                     SLLEEVKPAFSRVWVRYLGDIE"
BASE COUNT          230 a          217 c          162 g          258 t
ORIGIN      
        1 atagtacgta actccgcaac cgatttgcag cgaccgatgt gtttgtaacc atcagggttg
       61 gctaatgcgt taaaattatc acgagtagca tcgcccgcaa ttttcttgat tgctttagcc
      121 acctgattaa cttgttcgtc atttgcttcg attcctgctt cagcaagtac actgtgcaat
      181 tcttgttggg tgttaatgac cgaatcttgg acgttattca aaaattcagc agtcacaatc
      241 gtgccatatt caccagtggc agggttgcca tctttaaaac gctgtgttgg ggtattaatc
      301 ggattcatca cttgtttcat tcaatatctc ctaaatatct tacccacaca cggctaaatg
      361 caggttttac ctcttcaagt agactttcta aaattgggtc tttgtatcgt cccattaacg
      421 catcgccagc cattgacaca cttgctctaa aacgcttgta atcatctgtg gggttgcaaa
      481 tatccacaaa aaatgtccac ataatgtctt tatgccataa catatcccca gctcggctta
      541 gcccagcaat aaagggttgt ggctcactaa ttttgatgca atatccaagc tctttggcca
      601 cttgagtgat atagcctatc gacaatccac ccaactgatt cagctttgca atcacacgct
      661 caattcgggt ttcaagcggt agtgagctat tcgccgttaa gccacaaacc cgctcccaat
      721 catcaataaa aatgcctgtt gatacatcaa cggcatcgat taaagtcttg gctctcgcat
      781 caatgcggtc tagctctctc ccctcaactt caagggataa cgctagccat ctgccgtttg
      841 ggtcatacga tacaggcggt aataaac
//
LOCUS       DANLZD010000253          863 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.254, whole genome shotgun sequence.
ACCESSION   DANLZD010000253 DANLZD010000000
VERSION     DANLZD010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 863)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.254"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            141..>863
                     /locus_tag="PXE26_002600"
     CDS             141..>863
                     /locus_tag="PXE26_002600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5595123.1"
                     /translation="MLNWAGKSTAYQTLQTPTSKTLTPCEEESVDFENTQNIFIEGEN
                     LDVLKALQKSYFNSVKMIYIDPPYNTGNDFIYNDSFADTKADYAEKVGDVDEHGKLKR
                     AFVRNSKENGHYHSNWLNMMLPRLHLAKNLLRDDGVIFISIDDNEQAQLKLLCDEVFG
                     EENFVAILSVENNPKGRKNSKFISVSNDFCIIYAKNKEMGKFVENIPKNAKDMCQDEN
                     GHYVHASGKRVLVGENKFNQPVT"
BASE COUNT          299 a          147 c          166 g          251 t
ORIGIN      
        1 ttgccaactt ttcgcttaaa gatcaacaac tttctcaatt aaaatccctt ttacctgaaa
       61 ttttcaccga aggtaaaatc gacttcgaca aattccaaca acttttttcg gataattttt
      121 ccaccgaacc tgaccgctat atgctcaact gggcaggaaa atcaacagcc tatcaaacct
      181 tacaaacccc aaccagcaaa acgctcactc cttgcgagga agagagtgtg gattttgaaa
      241 atacgcagaa tatctttatt gagggtgaaa atttagatgt attaaaagcc ctgcaaaaat
      301 cctacttcaa ttcggtcaaa atgatttata tcgatccgcc atacaataca ggcaacgatt
      361 ttatttataa cgacagtttt gccgatacca aagcagatta tgcggagaaa gtgggcgacg
      421 ttgatgaaca cggcaaattg aaacgagcct ttgttcgtaa cagcaaagaa aatgggcatt
      481 atcacagtaa ctggctgaat atgatgttgc ctcgtttgca tctcgcaaaa aatttactgc
      541 gtgatgacgg ggtgattttt atttcaattg atgataacga acaggcacag ctgaaattgc
      601 tttgtgatga agtgtttggg gaggagaatt ttgttgccat attatcagtt gaaaataatc
      661 cgaaaggtag aaagaattct aaatttattt ctgtaagtaa tgatttttgt attatttatg
      721 ctaaaaataa agaaatgggg aaatttgttg aaaatattcc taaaaatgct aaggatatgt
      781 gtcaagatga aaatggacat tatgttcacg caagtggaaa acgagtatta gttggggaaa
      841 acaaatttaa tcagcctgta aca
//
LOCUS       DANLZD010000254          858 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.255, whole genome shotgun sequence.
ACCESSION   DANLZD010000254 DANLZD010000000
VERSION     DANLZD010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 858)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 858)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..858
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.255"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            122..304
                     /locus_tag="PXE26_002601"
     CDS             122..304
                     /locus_tag="PXE26_002601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDL5595124.1"
                     /translation="MKYSEFLRYLLAQGCEIENHRRGSHRKVTLNGKQSVFPYHGSKE
                     IGTGLVNKIKKDLDLK"
     gene            343..762
                     /locus_tag="PXE26_002602"
     CDS             343..762
                     /locus_tag="PXE26_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDL5595125.1"
                     /translation="MLRYPVEITPDDNGTYLVTCPDIPEMASVGEDLEEALLEAQDGL
                     ATALEFYFDDRREIPMPSPIKEGQHTVNLTVLQSMKVFLLNEMIKQGVRKAEMARRLD
                     VHLPQIDRLLDFNHSTKVEFVEKAYGKLNQHFTILPH"
BASE COUNT          292 a          165 c          160 g          241 t
ORIGIN      
        1 ccttgaataa accgccctcg tggcggtttt cttttctgct acaaaaaaac acaacaaaaa
       61 tgttgtaata ccaacaaaaa tgttgtatta tttccttgct gttttgataa ggaggtatct
      121 tatgaaatac agcgagttcc tgaggtactt acttgctcaa ggttgcgaaa ttgaaaacca
      181 taggcgaggc agtcatcgaa aggtaacact aaacggaaaa caatcggttt ttccttatca
      241 cgggagcaaa gagattggta caggtttagt aaataagatt aagaaagact tagatcttaa
      301 ataacaaagt ccctcgaaag aggggctttt ctaggagttt atatgttacg ctacccagtt
      361 gaaattaccc ctgatgataa cggcacatat cttgtgactt gccctgatat tcctgaaatg
      421 gcaagcgtag gtgaggactt agaagaagcc ctattagaag cacaagatgg cttagccaca
      481 gcccttgaat tctattttga tgatagacga gaaataccaa tgccaagccc aattaaagag
      541 ggacaacata cggttaatct taccgtgctg caatcaatga aagtatttct cttaaatgaa
      601 atgattaaac aaggtgtacg caaagcagaa atggcaagac gattagatgt acacttacca
      661 cagatagatc gcctattaga ttttaatcat tccacaaaag tagaatttgt tgagaaagcc
      721 tatggtaagc taaatcaaca ctttactatt ctccctcact aataaaataa ccgcctacgg
      781 gcggttttct ttttcctaaa atctgcaaaa ttctcttcaa aaacgaccgc ttgcaactca
      841 atctgtttat ttattaag
//
LOCUS       DANLZD010000255          847 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.256, whole genome shotgun sequence.
ACCESSION   DANLZD010000255 DANLZD010000000
VERSION     DANLZD010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.256"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            97..768
                     /locus_tag="PXE26_002603"
     CDS             97..768
                     /locus_tag="PXE26_002603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HDL5595126.1"
                     /translation="MKKSTLAIILGGALLTGTAVAHQAGDVIFRAGAVHVKANSSSDA
                     KSKAATGIDVDLEVKNNTQLGLTATYMLADNVGIELLGATPFSHKINAKAKVLESGAE
                     VDLDRVVILKQLPPSLYAQYYFFELTAKVKPYVGAGLNYTRFYHAKSVSPAVTDLSVK
                     KHSFGPVANLGVDVKLTDNIYFNAAAWYTRIKTTAKFKAAGADHEVKVKLDPVVLFAG
                     FGVKF"
BASE COUNT          266 a          146 c          165 g          270 t
ORIGIN      
        1 tttgataaat atcaattcat ttctatttca tttcatttac acttcgctaa agtttacctc
       61 attataggta ttctaattat ttttgaggat atgaaaatga aaaaatcaac tttagcaatt
      121 attttaggtg gggcattatt aactggaact gcggtggcac atcaagcagg tgatgtgata
      181 ttccgtgccg gtgcggtaca tgttaaggca aattcaagtt cagatgcaaa atcaaaagca
      241 gcgacaggta ttgatgtaga tttagaagtg aaaaacaata ctcagttagg cttaactgca
      301 acttatatgt tagccgataa tgtgggtatt gagttattag gtgcaacccc tttctctcat
      361 aaaattaatg ccaaagccaa agttttagaa tcaggtgcag aagtagattt ggatagagtt
      421 gttatcttaa aacaattacc accgagcctt tatgcccaat actatttctt tgagctaact
      481 gcaaaagtaa aaccttacgt tggtgcaggt ttaaattaca ctcgcttcta ccacgctaaa
      541 tcagttagcc ctgctgttac tgacttaagt gtaaaaaaac attctttcgg accggtagca
      601 aacctaggtg ttgatgtaaa attaaccgat aacatctact tcaacgcggc agcttggtac
      661 acacgcatta aaacaaccgc aaaatttaaa gcagcaggtg cagatcacga agtaaaagta
      721 aaacttgatc cggttgtctt atttgccggt ttcggggtga agttctaatt atttgttggg
      781 aacgagttgg gctaatctta gtgattagtc cttttttgtt aaagttgttt gaatatagcc
      841 ctttcca
//
LOCUS       DANLZD010000256          846 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.257, whole genome shotgun sequence.
ACCESSION   DANLZD010000256 DANLZD010000000
VERSION     DANLZD010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.257"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            83..>846
                     /gene="msrA"
                     /locus_tag="PXE26_002604"
     CDS             83..>846
                     /gene="msrA"
                     /locus_tag="PXE26_002604"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDL5595127.1"
                     /translation="MRSENLQDIYLAGGCFWGIEAYMEKIYGVKEATSGYANGKTEQT
                     AYRIIGQTDHAETVHVTYDANKISLEKLLQYYFKVIDPTSKNKQGNDIGRQYRTGIYY
                     QNEQDKQIILKEIQAQQAKYKQKIQVQVEPLKHYILAEEYHQDYLKKNPNGYCHIDLN
                     QANSIIIDPKDYPKPSDATLKMKLTPLQYSVTQRKNTERSFSNEYWDNTAPGIYVDIT
                     TGEPLFSSLDKYDSGCGWPSFTKPIINEVVNYTEDN"
BASE COUNT          317 a          159 c          146 g          224 t
ORIGIN      
        1 gaaatacaat caactgttac tatgtttggt gtctgctatc tttaccacct cctcaatagc
       61 aaacatcaca acccctaacg agatgcgatc tgaaaactta caggatattt acttggcagg
      121 aggatgtttc tggggcattg aagcctatat ggaaaaaata tatggcgtaa aagaggctac
      181 atcgggctat gccaatggca aaactgagca aactgcttac cgaattatcg ggcaaaccga
      241 tcatgcagaa acagttcacg tgacctatga tgctaataaa atttctttag aaaagctgtt
      301 gcaatattac tttaaagtaa ttgatccaac cagtaaaaat aaacaaggta atgatattgg
      361 ccgccaatat cggacaggta tttattatca gaatgagcaa gataaacaaa ttattttaaa
      421 agaaatacaa gctcaacaag caaaatacaa acaaaaaata caagtgcaag tagaaccatt
      481 aaaacattat attttggcag aagagtatca tcaggattac ctaaagaaaa atccaaatgg
      541 ctactgccat attgatttaa accaagccaa cagcattatt atcgatccga aagattatcc
      601 taaacctagt gatgcaacat taaaaatgaa attaacgcct ttgcaatata gcgttaccca
      661 acgtaaaaat actgagcgtt cattcagcaa tgaatattgg gataataccg caccgggcat
      721 ttatgttgat ataactacag gagagcctct tttttcatct ctcgataaat atgactccgg
      781 ctgtggctgg ccaagtttta ccaaaccaat tatcaatgag gttgttaact ataccgaaga
      841 taatag
//
LOCUS       DANLZD010000257          837 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.258, whole genome shotgun sequence.
ACCESSION   DANLZD010000257 DANLZD010000000
VERSION     DANLZD010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 837)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 837)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..837
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.258"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(184..822)
                     /locus_tag="PXE26_002605"
     CDS             complement(184..822)
                     /locus_tag="PXE26_002605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDL5595128.1"
                     /translation="MELKHTIEQRKTIKAFNSTIKISRTELEEMVALSQLAPSKANLQ
                     PWRFVIIDVEILKAALSKNVAFNGPPCETASAIVVILADLQYEKLLGAIVDQSVETGC
                     LHKEFRERKFDFLLNLHNQATQAEIRDQVLIDTSLAAMQLMLIAKDKGYDTHAIGVFE
                     RPAVLKLLNIDAERYLPVMLLAIGKAANPALPSCRLPLEYTVSWNDGQGFKI"
BASE COUNT          275 a          168 c          121 g          273 t
ORIGIN      
        1 aaccctaaat aaataggtaa ttgtaaccaa cgacttgcga aaataatttt acctaaaata
       61 tttgccctag tatttaattc cgaatgcata tatctcctat aaatagcaat acaaaaataa
      121 attacaacgc tcaaatttta acaatttttt gccaaaaaat taagatattt aaccgcttgc
      181 accttatatt ttaaaacctt gtccatcgtt ccaagaaacc gtatattcta gaggtaaacg
      241 gcaacttggc aacgctgggt ttgctgcttt accgatagct agtagcataa caggcaaata
      301 acgttctgca tctatattca ataattttaa tacagcaggg cgctcaaaca cgcctatcgc
      361 atgagtatca tagcccttat ctttggcaat tagcattaat tgcattgccg ccaaactagt
      421 atcaattaat acctgatctc taatttctgc ttgagttgct tggttatgaa gatttagtaa
      481 aaaatcaaat ttacgttcac gaaactcttt atgcaaacac ccagtttcta ccgattgatc
      541 aacaattgcg cctaataatt tttcatattg caaatctgcc aatatcacca caatagcaga
      601 cgctgtttca caaggtgggc cattaaaggc aacatttttt gataatgctg ctttaagaat
      661 ttcaacatca ataatgacaa aacgccaagg ttgcagattt gcttttgagg gagcaagctg
      721 ggataaagcg accatttctt ctaattcagt tctactaatc ttaattgttg aattaaaagc
      781 tttgatagtt ttacgctgtt caatcgtatg tttcaattcc atctcttttc tcctatc
//
LOCUS       DANLZD010000258          822 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.259, whole genome shotgun sequence.
ACCESSION   DANLZD010000258 DANLZD010000000
VERSION     DANLZD010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.259"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            2..775
                     /locus_tag="PXE26_002606"
     CDS             2..775
                     /locus_tag="PXE26_002606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HDL5595129.1"
                     /translation="MNLSNALKLIKYNELDVLEVNHNKFKAKIALQGAQLLSWQPYNA
                     EQDVLWLSEIEPFRIGSAIRGGIPICYPWFGSIKEPAHGTARIQEWRLVEHTCSDENV
                     GLVFALENKAKMEMMLGETCELYFTHLDPEPAQLALHSYFNIGDIEKVEVQGLPTRCF
                     DKLTDQEVEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETVLWNPWH
                     NTVSAMTETAYQNMVCVETARINTLLQQNETLGVRVLVR"
BASE COUNT          268 a          132 c          185 g          237 t
ORIGIN      
        1 tatgaacttg agtaatgcat taaaattaat caaatataat gaattagacg tgctagaagt
       61 taatcacaat aaattcaaag ctaaaattgc attacaagga gcacaattgc taagttggca
      121 gccgtataat gcagagcaag atgtgctgtg gttaagtgag atagaaccgt ttagaattgg
      181 ctctgcgatt cgtggcggta taccaatttg ttatccgtgg ttcggttcaa taaaagagcc
      241 tgcccacggc acagctcgca ttcaagaatg gcgtttagtt gagcatactt gttctgatga
      301 aaatgtcggt ttggtatttg ccttagagaa taaagcgaaa atggaaatga tgttaggcga
      361 aacttgtgag ttatatttta cccatttaga tccagaacca gcacaactgg cattgcactc
      421 ttattttaat attggtgata ttgaaaaagt ggaagtgcaa ggcttgccaa ctcgctgttt
      481 tgataagcta accgatcaag aagttgaagt gccatcacct cgcaagataa gtgaaaatgt
      541 ggattgtatt tatccggcac aagcggtgaa ttttattcaa gattttgcaa atcagcgcac
      601 cattaaagtt gagcatatta atgcgaccga aaccgtactt tggaatcctt ggcataatac
      661 cgttagtgcg atgacagaaa cggcgtatca aaatatggta tgtgtggaaa ccgctcggat
      721 aaatactcta cttcaacaaa atgaaacgct aggagtgagg gttttagtgc gatagtgttt
      781 aatgagagca agcagctgaa ttagtaatat tgtttacaaa tt
//
LOCUS       DANLZD010000259          813 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.260, whole genome shotgun sequence.
ACCESSION   DANLZD010000259 DANLZD010000000
VERSION     DANLZD010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 813)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 813)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..813
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.260"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            136..780
                     /locus_tag="PXE26_002607"
     CDS             136..780
                     /locus_tag="PXE26_002607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5595130.1"
                     /translation="MFGHIWQYAREWGYTTLASPNTGMKRFPIRKREIYVENNIFEMV
                     YEVADQDIKDLMDLAYLTGQRPVDLVNIQRDHIFDGYLHIVQQKTQAKLRIEIVGKLA
                     DIIQSRLEKTTRNFLFTTSKGEKMTSVKLGRRFTYIREQAAKKHPEYANEIKEFQFRD
                     LRAKSGTDKALAQGEEAARQQLGHTSVQMTKVYIRKAPIVTPIQESVSSQKHKP"
BASE COUNT          322 a          160 c          140 g          191 t
ORIGIN      
        1 tttaatattt actaaactac acccatcaaa acaaacaacg ccacagacaa aggggaaacc
       61 aaaatgaacg cacaaacaac gctaaacaac cacaaagact acattcacta agaattttta
      121 tcaaagccct tttcaatgtt cggtcatatt tggcaatacg caagagagtg gggttacaca
      181 acgttagcta gtcctaatac aggaatgaaa cgctttccaa ttagaaaacg tgaaatttac
      241 gttgagaaca atatttttga aatggtgtat gaagtagcag atcaggatat taaagattta
      301 atggatctcg cttaccttac aggacaaaga cctgtagatt tagttaatat ccaacgcgat
      361 catatatttg atggatatct ccatattgtg caacaaaaaa cacaagccaa actgcggatt
      421 gagatagttg gcaaacttgc tgatataatt caaagtaggt tagaaaaaac cacaaggaat
      481 ttcttattta caacgtcaaa aggagaaaaa atgacctctg taaaattagg aagacgcttt
      541 acttatatcc gagaacaagc agcaaaaaaa catcccgaat acgcaaatga aataaaggaa
      601 ttccaattta gagatctaag ggctaagtca gggacagaca aagcccttgc acaaggagaa
      661 gaagctgcac gccaacaatt aggtcatact agcgttcaaa tgacaaaagt ctatatccga
      721 aaagccccga tagtaacccc aattcaagaa agcgtttcct cccaaaaaca caaaccttaa
      781 aacctagttt cggaacatct gagaattttt cgg
//
LOCUS       DANLZD010000260          802 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.261, whole genome shotgun sequence.
ACCESSION   DANLZD010000260 DANLZD010000000
VERSION     DANLZD010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..802
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.261"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            130..519
                     /locus_tag="PXE26_002608"
     CDS             130..519
                     /locus_tag="PXE26_002608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5595131.1"
                     /translation="MADPIEWSIITTDCFDEWFGQQDGSTQERVLACLIYLRKFGYSL
                     GRPYADTVYQSKFPNMKELRIQNKGKPIRAFYAFDPLRQAIVLCAGEKGKDKRFYEKM
                     IALADAEFTSYLNNLEKENENVRSNAQ"
     gene            491..790
                     /locus_tag="PXE26_002609"
     CDS             491..790
                     /locus_tag="PXE26_002609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL5595132.1"
                     /translation="MKTLDQMLNELSPERRQKVEDMAQEMIREIQLSKLREELNLSQQ
                     QLATALGISQPAIAKLEQKDNDPRLSTLKRYIEAMGGKLKLAVELPTGDERVIRI"
BASE COUNT          279 a          138 c          153 g          232 t
ORIGIN      
        1 tggattgttg ataaaaaaag accgcttgta gtcatacaaa cggcttagta ggaagagtaa
       61 attgctttac ataatataac cttttattta tacttcattt ataaatagta agttataaaa
      121 ggttcaaaaa tggcagaccc tatagaatgg tctattatca cgactgactg ctttgatgaa
      181 tggttcggtc aacaagatgg aagtactcaa gaacgtgtct tggcttgttt aatctatctg
      241 cggaaattcg gttatagtct aggcagacct tatgctgata cagtttatca gtctaaattc
      301 cctaatatga aagagttacg cattcaaaac aaaggtaagc caattcgagc attttatgct
      361 tttgaccctt tacgccaagc gatagtactt tgtgctggcg agaaaggtaa agacaaaaga
      421 ttctatgaaa aaatgatcgc tcttgctgat gcggaattta cctcctattt aaataattta
      481 gagaaagaaa atgaaaacgt tagatcaaat gctcaatgaa ctctctcctg aacgccgcca
      541 aaaagtggaa gatatggctc aagaaatgat tagagagata caactttcaa aactaagaga
      601 agagctaaat ctctctcaac aacaattagc tacagctctc ggtatttcac agcctgctat
      661 tgctaaactt gaacagaaag ataacgatcc aagattatcc acgctcaaac gctatattga
      721 agcaatgggc ggtaagttaa aacttgccgt tgaattgcct acaggcgatg agcgtgtaat
      781 taggatttaa ttactttgtt aa
//
LOCUS       DANLZD010000261          800 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.262, whole genome shotgun sequence.
ACCESSION   DANLZD010000261 DANLZD010000000
VERSION     DANLZD010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 800)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.262"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>800
                     /locus_tag="PXE26_002610"
     CDS             <1..>800
                     /locus_tag="PXE26_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5595133.1"
                     /translation="KVEEFTETLKTLSRDDLSAEERTTKTIDSVKLRIYLNEQARNRK
                     NYINGFVPTDWIPEITDQMTKSKNLWLKYEEEAKTTLKPYQEETISRVIQDEINKKMA
                     EIGTTTLEIGGKEHELEDLENQINALALTDEEKLAEDVENDLISKLDEAKAALAKNQQ
                     TLKEKRDELLGLNNKLDSSPLVKKGKNALAEGTNAFASGENAIAFGTDSQATGNNAIA
                     LGANSKANAESAIAIGKGAQALKEKALALGENAIANRASAIAIGDNHS"
BASE COUNT          326 a          135 c          154 g          185 t
ORIGIN      
        1 gaaggtagag gaatttactg aaacattaaa aactttatct agagatgact taagtgcaga
       61 ggaacgtaca accaaaacaa ttgactccgt taaattaaga atatatctca atgaacaagc
      121 acgaaatcgt aaaaattata ttaatggatt tgtacctacc gattggattc ctgaaattac
      181 agatcaaatg acaaaatcca aaaatctatg gttaaaatat gaagaggaag ccaaaacaac
      241 attaaaacca taccaagaag aaacaatatc tagggttata caagatgaaa ttaataaaaa
      301 aatggctgaa ataggtacta caacactaga gattggtggt aaagaacacg agctcgagga
      361 tcttgaaaac caaattaatg ctttagcttt aactgatgaa gaaaaacttg cggaagatgt
      421 ggaaaatgat ttaatctcaa agcttgatga ggctaaagca gccttagcaa aaaaccagca
      481 aacgctcaaa gaaaagcgtg atgaattact agggctaaat aacaaattag atagctcacc
      541 acttgttaaa aaaggtaaaa atgcacttgc agaaggcacg aatgcctttg cttctggtga
      601 aaatgccatc gcattcggca cggattcaca agctacaggt aataacgcta tcgcactagg
      661 tgcaaattca aaagcaaacg cagaaagtgc gattgcaatt ggtaaaggtg cacaagcatt
      721 aaaagaaaaa gcccttgctt taggcgaaaa tgccattgcc aacagagcat ctgctattgc
      781 gattggtgat aaccattcat
//
LOCUS       DANLZD010000262          799 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.263, whole genome shotgun sequence.
ACCESSION   DANLZD010000262 DANLZD010000000
VERSION     DANLZD010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 799)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.263"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..537
                     /locus_tag="PXE26_002611"
     CDS             <1..537
                     /locus_tag="PXE26_002611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015483985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5595134.1"
                     /translation="NLTFKSNKLSDNPAIISGKQGVIFCDDLSLGVNKHRLRLRFSSP
                     INFTVNQEWQKMPFDRVLNDINGHVDIVSGQFIARTGGTFHLKGKITVTNSSEDVLNL
                     YQLRLLINNEEKERLINQSVSPKNSKSNTNGMTTINFDTVVDLKVGDIVDLQYKTTHE
                     LTLLSDSFLSQIYVTQEF"
     gene            538..780
                     /locus_tag="PXE26_002612"
     CDS             538..780
                     /locus_tag="PXE26_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595135.1"
                     /translation="MTKKHYCTGWRNAPANINSCCHQHDRDYGIKGTVSRAEADKRLR
                     HCLISQGNPIKAWVFWVVVRLFGWIYYKEKNINGKS"
BASE COUNT          276 a          118 c          171 g          234 t
ORIGIN      
        1 aatttaacat ttaagagtaa taaattatcg gacaatcctg cgattatatc aggtaagcaa
       61 ggtgttattt tctgcgatga tttgagctta ggagtaaata agcacagatt aagattgcga
      121 ttttcatcgc cgattaattt tactgttaat caagaatggc aaaaaatgcc gtttgacaga
      181 gtgttaaatg atatcaatgg tcatgttgat attgtcagtg gtcaatttat tgcaaggaca
      241 ggcggcactt ttcatttaaa aggtaaaata acggttacaa attcatcgga agatgtgctg
      301 aatttatatc aactcaggct gttaataaat aacgaagaga aagaaagact gattaatcaa
      361 agtgtttcac ctaaaaacag caaatcaaat acaaatggta tgacaacaat caattttgat
      421 actgtagttg atttaaaagt aggtgacatt gttgatttgc agtataaaac aacgcatgag
      481 ttgacattac tgtcagactc atttttatct caaatttatg tgactcagga gttttaagtg
      541 actaaaaaac actactgcac aggctggcgt aatgcgccag ccaatatcaa tagttgctgt
      601 catcagcatg accgagacta cggtatcaag ggcacagtca gccgagccga agccgacaag
      661 cggttaagac attgcttaat ttcgcaaggg aatccgatta aggcgtgggt gttttgggtt
      721 gtggtgaggt tgtttgggtg gatttattac aaggagaaaa atatcaatgg aaagtcataa
      781 aacaggaaat atcattact
//
LOCUS       DANLZD010000263          774 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.264, whole genome shotgun sequence.
ACCESSION   DANLZD010000263 DANLZD010000000
VERSION     DANLZD010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 774)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.264"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(76..381)
                     /locus_tag="PXE26_002613"
     CDS             complement(76..381)
                     /locus_tag="PXE26_002613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HDL5595136.1"
                     /translation="MRKPAHPGQILLDGFIEPNNIKIKELADHLGFSRETLSRVLHGK
                     TPMTANLALSLEEAGISTAKLWLNLQTKYDLWELKQQRLNPVMPFHFGGNYGETAHA"
     gene            complement(390..665)
                     /locus_tag="PXE26_002614"
     CDS             complement(390..665)
                     /locus_tag="PXE26_002614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011039853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5595137.1"
                     /translation="MIKSFKHKGLKQYFEKGITKGIQLNHQRKIDGILDLIDSAESID
                     EFMPFYQCHELKGNRKGIYSMTVNGNWRITFEFVNGDAYILNYEDYH"
BASE COUNT          243 a          157 c          103 g          271 t
ORIGIN      
        1 atattccttg aataaaccgc cctcgtggcg gttttctttt cctaagaaca ataaaatcct
       61 ccgaagaggg cattattaag cgtgagcagt ttctccataa tttccaccaa aatgaaaagg
      121 cataacagga tttaaccgct gctgctttaa ctcccataaa tcatatttag tttgtaagtt
      181 tagccataac ttagccgtac taattcctgc ctcttctaaa cttaacgcta aatttgcagt
      241 cattggtgtt ttgccgtgta atactcttga taaagtttca cgagaaaacc caagatgatc
      301 tgctaattct ttaattttga tgttatttgg ttcaataaat ccatctaata aaatttgccc
      361 cggatgtgct ggtttacgca taactccccc taatgataat cttcataatt caaaatataa
      421 gcatcgccat ttacaaattc aaatgtaatc cgccagttgc cattaaccgt catagaataa
      481 atgccttttc gatttccttt taactcgtgg cattggtaaa aaggcataaa ttcatcaata
      541 ctttctgctg aatcaatcaa atctaaaata ccatcgattt tacgttgatg attaagctga
      601 ataccttttg ttattccttt ttcaaaatat tgttttaagc ctttatgctt gaagctctta
      661 atcataataa cacctagcaa acacaatgtg atacaaatat atcacgcaca ataaaaaaga
      721 caatcttttt taagtgcttt ttctcctaat tgtctttctc ttcttatgtt aagt
//
LOCUS       DANLZD010000264          768 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.265, whole genome shotgun sequence.
ACCESSION   DANLZD010000264 DANLZD010000000
VERSION     DANLZD010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 768)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.265"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..609
                     /locus_tag="PXE26_002615"
     CDS             <1..609
                     /locus_tag="PXE26_002615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595138.1"
                     /translation="AAISANLGKVTAGTITGTTISGGTISGTTITGGIIKGARIEGLT
                     GKFTGELEINQLIGGNIYEAKTWTSKATGKSKTYSETKNSFALSDTYYEYVCQFVLPA
                     TKATRTLYVVHTPTGESKSETFYGSGSNRTPTTITLPSVIDISNTISPNVSNPFNDSG
                     AILIANTQYVVTCRAWCAGRGRSAKVNFRAIISSTNGSSYQL"
     gene            619..>768
                     /locus_tag="PXE26_002616"
     CDS             619..>768
                     /locus_tag="PXE26_002616"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595139.1"
                     /translation="MKKIILLTTIMVSACTTQYKQDYTTKPTFCYQLAPQEQLPGKNC
                     IGSGGH"
BASE COUNT          277 a          127 c          158 g          206 t
ORIGIN      
        1 gcggcaatat cggcaaatct tggtaaggta actgctggta caattacagg gacgacaatt
       61 agtggtggga caatttcagg tacaacaatt acagggggaa taattaaagg agcaagaatt
      121 gagggattaa caggtaaatt tactggagaa cttgaaatca accaattgat cggaggtaat
      181 atctatgagg ctaaaacttg gacatcaaaa gcaacaggga aaagtaaaac atattcagaa
      241 acgaaaaaca gttttgcatt aagtgataca tattatgagt atgtatgtca atttgtacta
      301 cctgctacaa aagcgacgag aacattgtat gttgtccaca ctccaacagg agagagtaaa
      361 agcgaaactt tttatggtag tggtagtaat cggacaccga caacaattac attaccgtct
      421 gtaattgata ttagcaatac tatttcacct aatgtatcta acccatttaa tgattctggg
      481 gcaatactca ttgctaatac tcaatatgta gtaacgtgtc gtgcgtggtg tgcagggcgt
      541 gggagaagtg ctaaagtgaa ttttcgagca attatatcat ctacaaatgg ttcatcttat
      601 caattatagg aggcaaatat gaaaaaaatt atactactta caacaattat ggtttcagct
      661 tgtacaactc aatataagca agactataca acaaaaccaa ccttttgtta tcaactagcc
      721 cctcaagagc aattaccggg gaaaaactgt attggctcag gagggcat
//
LOCUS       DANLZD010000265          760 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.266, whole genome shotgun sequence.
ACCESSION   DANLZD010000265 DANLZD010000000
VERSION     DANLZD010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 760)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.266"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..552
                     /locus_tag="PXE26_002617"
     CDS             <1..552
                     /locus_tag="PXE26_002617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5595140.1"
                     /translation="AGQERCIADEVPFEIPQNWTWVRLGEVGDWSSGATPNRHNPEYY
                     NGTIPWLKTGDLNNGIISSIPEFITDKALQECSVRLNPVGSVLIAMYGATIGKLGILK
                     IAATTNQACCACIPFNGIYNKFLFYYLMSQKAEFQKKSEGSGQPNISKEKIINYLFPL
                     PPIHEQHRIVQKIEQLFAEIEKL"
BASE COUNT          261 a          128 c          144 g          227 t
ORIGIN      
        1 gcaggtcagg aacggtgtat cgccgatgaa gtgccatttg agattcctca aaattggact
       61 tgggtgaggt tgggggaagt aggtgattgg agttcaggtg caactccaaa ccgacacaat
      121 cctgaatact ataatggtac gatcccgtgg ctaaaaacag gagacttaaa caacggaata
      181 atttcatcta tacctgaatt tattacagat aaagcattgc aggaatgttc tgtaagatta
      241 aatcctgttg gttcagtttt gatagcaatg tatggagcga caattggtaa gcttgggata
      301 ttaaaaatag cagcaacaac aaatcaggct tgctgtgcgt gtattccttt taatggaatt
      361 tataataaat tcttatttta ttatttgatg tcgcagaaag cagaatttca gaaaaaaagt
      421 gagggaagtg ggcaaccaaa tatatcaaag gaaaaaatta tcaattattt atttccttta
      481 ccaccaatcc acgaacaaca tcgcattgtt caaaaaattg aacaattatt tgcagagatt
      541 gaaaaattgt aggagtcatc atcgctttct tgggcgtgtt ggatacgccc tacagtcact
      601 aaattattga tcttttatca tatcggtttt caaccaacct aaaaggaaac ctatatgatc
      661 catctatttg aaaagcacct taatcaatct aatcttgctg aaaataccca atcagcttat
      721 ctttttgcgg taaaacaata tcacaaaaaa tttgatcagt
//
LOCUS       DANLZD010000266          758 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.267, whole genome shotgun sequence.
ACCESSION   DANLZD010000266 DANLZD010000000
VERSION     DANLZD010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.267"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>758
                     /locus_tag="PXE26_002618"
     CDS             <1..>758
                     /locus_tag="PXE26_002618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HDL5595141.1"
                     /translation="DARKFSPLSAKDQIFFKNESFETGKSLNLDEVFDRNLSVETPNG
                     FDVILEDKKTGNLSGVNQSNIKALQFFIYQSQQTEEPLQRRFENSEIYGPFVVKSENH
                     TYNQYFIKAVDAQKEWINTILDSPFIMAVLLMFAGIPLLIWLSFKITKPVKELTISAN
                     AVASGNLETNPKLEAEWIYEIGEVGKSFNHMVISLKNLTQQQQRMISDISHELKTPLA
                     RLQLAIAILRRKTCGLAEIDRIEAEVGKLDQLIK"
BASE COUNT          278 a          116 c          134 g          230 t
ORIGIN      
        1 gatgctcgca aattttctcc cctttctgca aaagaccaaa ttttctttaa aaatgaaagc
       61 tttgaaacag ggaaaagctt aaatttagat gaagtttttg atagaaattt atcagttgaa
      121 acacctaatg gatttgatgt aatcctagaa gataaaaaaa ctggtaattt aagtggcgta
      181 aaccaaagta atattaaagc attgcagttt tttatttatc aatcacaaca gactgaagag
      241 ccgttacaaa gacggtttga aaatagtgaa atctatggtc catttgtcgt gaaatccgaa
      301 aaccatactt ataaccaata ttttattaaa gcggtagatg ctcaaaaaga gtggattaat
      361 acgattttag actcaccttt tattatggca gtattactta tgtttgccgg aattccttta
      421 ttaatatggt tatcctttaa aattaccaaa ccggttaaag aattaactat ctcggcaaat
      481 gcggtagcct ctggtaattt ggaaactaat cctaaattag aagcagaatg gatctatgaa
      541 attggggaag ttggaaaaag ctttaatcat atggtgataa gcttaaaaaa cttaactcag
      601 cagcaacaaa gaatgatttc ggatatatct catgagttaa aaacaccttt agccagatta
      661 caactcgcta ttgctatatt acgccgtaaa acctgtggtc tggcagaaat cgatcgcatt
      721 gaagcagaag taggtaaatt agaccaattg attaaaga
//
LOCUS       DANLZD010000267          741 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.268, whole genome shotgun sequence.
ACCESSION   DANLZD010000267 DANLZD010000000
VERSION     DANLZD010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 741)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.268"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            299..>741
                     /locus_tag="PXE26_002619"
     CDS             299..>741
                     /locus_tag="PXE26_002619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595142.1"
                     /translation="MELGKTTETDVKEMYNLEPEGVNKYSKGNQYFIDPTQLDLEDLK
                     STLIIFDEKGVLVFVGSEFNSISSIEDSKNRYKKFDYLYKILASKYKLVKKERPFVGD
                     QYAKFKDGNSEIELSEPHMGGFKINLTYAKKEFLDAFQKIQSEDK"
BASE COUNT          316 a           91 c          121 g          213 t
ORIGIN      
        1 aactatgaac aaatttatga agttagaaat gaaaaaaacg aatcaaggca aaaagaaaaa
       61 aagagaatta aaagaaagaa tagatacact tagtttagaa atagataaat atatgaaatc
      121 tagttatgca gaatatctag aaactttaaa ataacaaaaa tagcatcccc gcaagaatga
      181 ggagatggct atttttgtta tttatagctt ataggaaact cattatgaaa aagatgttaa
      241 agctacatta tttgcaacta ttagtacttc tgtattagct gaaccaaccg tttttaaaat
      301 ggaactaggt aaaacaacag aaacagatgt aaaagaaatg tataaccttg aaccggaggg
      361 tgttaataaa tacagcaagg gtaatcagta ttttattgat ccaacgcaat tagatttaga
      421 agatcttaaa tcaacgctta ttatctttga tgaaaaaggg gtattagttt ttgttggttc
      481 cgagtttaat tctatatctt ctatcgagga ttcaaaaaac cggtataaaa aattcgatta
      541 tttgtacaaa atactagcaa gcaaatataa acttgtaaaa aaagaacgtc catttgtagg
      601 cgatcaatat gctaaattta aagacggtaa ttcagaaatc gaattatcag aaccacatat
      661 gggtggtttt aaaattaact tgacttatgc aaaaaaagaa ttcttagacg cattccaaaa
      721 gatacagtct gaagataaaa a
//
LOCUS       DANLZD010000268          723 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.269, whole genome shotgun sequence.
ACCESSION   DANLZD010000268 DANLZD010000000
VERSION     DANLZD010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.269"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..259
                     /locus_tag="PXE26_002620"
     CDS             <1..259
                     /locus_tag="PXE26_002620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595143.1"
                     /translation="YGFLRDGATLVANGIVNEPSVDCFSQEIAQFTGCHIFSSLYIAF
                     NTQRSFKSHWDSRDIFAVQMQGKKRWIIHTPTFKKTIVYAS"
     gene            249..>723
                     /locus_tag="PXE26_002621"
     CDS             249..>723
                     /locus_tag="PXE26_002621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin-like domain-containing protein"
                     /protein_id="HDL5595144.1"
                     /translation="MHRSKDMPEYAPNLDDVYMDIVLEAGDVLYLPRGWWHDPIPVGE
                     ETVHLAVGIFPAYTHNYLTWVSQNMVEKEIARASLSHYESDKELIAQLAEQTAEYIKD
                     KENYHKFIENFYDQKRVEKPLNLETLGNYQYDSISENQKISFKAKNHYFGYENKII"
BASE COUNT          243 a          100 c          136 g          244 t
ORIGIN      
        1 atatggtttt ttaagagatg gggcaacatt agtcgcaaat ggtattgtaa atgaaccaag
       61 tgttgattgc ttctctcaag agatagctca atttacaggc tgtcatattt tttcaagttt
      121 atatattgcg tttaatactc aaagatcttt taaaagccat tgggatagtc gtgatatttt
      181 tgcagttcaa atgcagggta aaaagcgttg gattattcac actccaacat ttaaaaaaac
      241 cattgtttat gcatcgtagt aaagatatgc ctgaatatgc tcctaatctt gatgatgtat
      301 atatggatat tgtattagaa gctggagatg ttctttattt acctcgtggc tggtggcacg
      361 atcctattcc tgttggagaa gaaactgtgc atttagctgt aggcattttt cctgcttata
      421 ctcataacta tctgacttgg gtatctcaaa atatggttga gaaagaaatt gcccgagctt
      481 ctttatcgca ttatgagtca gataaagagt tgatagcaca gttggcagaa caaacagcag
      541 aatatattaa agataaagag aattatcata aatttataga gaatttttat gatcagaagc
      601 gggttgaaaa gccacttaat ttggaaactt taggaaatta tcaatatgat tctatttcgg
      661 aaaatcaaaa aatttcattt aaagccaaaa atcactactt tggttatgaa aataagataa
      721 ttt
//
LOCUS       DANLZD010000269          720 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.270, whole genome shotgun sequence.
ACCESSION   DANLZD010000269 DANLZD010000000
VERSION     DANLZD010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.270"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            2..673
                     /locus_tag="PXE26_002622"
     CDS             2..673
                     /locus_tag="PXE26_002622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5595145.1"
                     /translation="MTLPEIRRKKLTEWFNTRDIPEKEKSYISQLKSGKSSFGERAAR
                     RLENEYGMPSFYLDYDEETESAIVSAMSIQETQSHQYPIHLIDFKAKAGETGFVNTNY
                     PEIIQSIYFSLDGLLEIVGRKSSNGIEMITIPTDSMSPTINKGDVVFIDTTINYYDNE
                     GVYIFVIDDEVYIKRLQKIPGGIYRALSDNKTYEPFDIKRETLDTAIILGKFIRVLPI
                     NPKDL"
BASE COUNT          253 a          119 c          140 g          208 t
ORIGIN      
        1 tatgaccctg ccagagattc gcagaaaaaa acttacagaa tggttcaaca caagagatat
       61 tccagaaaag gaaaaaagct acatatcaca attaaaatca ggaaaatcat cttttggtga
      121 gcgtgcagca agaagattag agaatgaata tggaatgcct agcttttatt tggactatga
      181 tgaagaaaca gaaagtgcga ttgtgtctgc tatgtcaatt caagaaacac agtctcatca
      241 ataccccatt catctaattg acttcaaagc taaggcgggc gaaacaggtt ttgtcaatac
      301 taactatcct gaaattattc aatctatcta tttctcttta gacggcttgc ttgaaattgt
      361 agggcgaaaa tcaagcaatg gcattgagat gatcaccatt ccaactgata gtatgagccc
      421 aacaataaac aaaggggatg ttgtttttat tgatactaca atcaattatt acgataacga
      481 gggtgtttat atttttgtta ttgatgatga agtttatata aaaagactac aaaaaattcc
      541 aggtggtatt tatagagccc tatcggacaa caagacttac gaaccttttg atataaagag
      601 agaaacctta gatactgcta ttatccttgg gaaatttatt cgagtattgc caataaatcc
      661 taaagacttg taggcattag cgtagcggtt gagcatcgga gctatttgta gccagcggtt
//
LOCUS       DANLZD010000270          716 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.271, whole genome shotgun sequence.
ACCESSION   DANLZD010000270 DANLZD010000000
VERSION     DANLZD010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 716)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.271"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..119
                     /locus_tag="PXE26_002623"
     CDS             <1..119
                     /locus_tag="PXE26_002623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CMP-N-acetylneuraminate-beta-galactosamide-
                     alpha-2, 3-sialyltransferase"
                     /protein_id="HDL5595146.1"
                     /translation="KSNHIEVVALRVNVDNPAYIESYELLEKLGVQIVDIRE"
     gene            121..>716
                     /locus_tag="PXE26_002624"
     CDS             121..>716
                     /locus_tag="PXE26_002624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HDL5595147.1"
                     /translation="MKKYLISLEKDVKRRELFFSQPNTEDFEVFSAINTMSSDWEALN
                     NHFDLALFEQRYGRKTTKGEVGCTLSHLAVYQKIAEDSTIAEDDYCLVCEDDALFADD
                     FQKHLDALLAQNLKVDIILVGQSKIPTFNDSELELNYPSTFGFLQKNIPNSQYKYAYS
                     YLNYFAGTVAYLIKKSTACQFLAQCAGKNPYWLADDFI"
BASE COUNT          240 a          104 c          139 g          233 t
ORIGIN      
        1 ataaaagtaa ccatattgaa gtggtagcat taagagtgaa tgtagataat cctgcttata
       61 ttgagagcta tgaattgctt gaaaaattag gcgttcagat tgttgatatt agagaataaa
      121 atgaagaaat atttaatttc attagaaaaa gatgtaaaaa gacgagagct attttttagc
      181 cagcctaata cggaagattt tgaggtgttc agtgccatta atacaatgag tagtgattgg
      241 gaggcattaa ataaccattt tgatttggct ctgtttgaac agcgatatgg gcgtaaaacc
      301 actaagggcg aagtaggttg tactttaagc catttagccg tttaccaaaa aattgccgaa
      361 gatagcacta ttgcggaaga tgattactgc ctagtctgtg aagatgatgc cttatttgcc
      421 gatgatttcc aaaaacatct tgatgcttta ttagcacaaa atttaaaagt cgatattatt
      481 ttagttgggc agtcgaaaat tccaactttt aacgatagcg aattagagct taattaccca
      541 tcaacctttg gctttttgca aaaaaatatt ccgaatagcc aatataaata tgcttattct
      601 tacctgaatt attttgctgg tacggttgca tatttaatta aaaaatcgac cgcttgtcag
      661 tttttagcac aatgtgccgg aaaaaatcca tactggcttg ccgatgattt tatttt
//
LOCUS       DANLZD010000271          698 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.272, whole genome shotgun sequence.
ACCESSION   DANLZD010000271 DANLZD010000000
VERSION     DANLZD010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.272"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>698
                     /locus_tag="PXE26_002625"
     CDS             <1..>698
                     /locus_tag="PXE26_002625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5595148.1"
                     /translation="FDKWALYDVSRYCDQLVPDGMGGQEPRFTCDVWLTEVKTAYDLL
                     NDFCSVFRAIPIWTGTEVSVIIDRPRDPVWTYTNANVVSGFERSYSARKSRHNAVQVT
                     YSDKTNGYESAIEYVSDDEEIKKHGLNLSQITAFGCTSRGQAHRTGKWILETEKREKE
                     TITFTVGREGLMHLPGDIIRVADSHYAGTEIGGRVLAINGRKVTLDREISIDNASYFT
                     YINGEATHSTIKIQS"
BASE COUNT          194 a          152 c          167 g          185 t
ORIGIN      
        1 tttgataaat gggcgttgta tgacgtctct cgctattgcg atcagcttgt gccggacggt
       61 atgggcggac aagagccacg ttttacctgt gatgtatggc tcacggaagt taaaactgcc
      121 tatgatttat taaatgattt ctgctcggta ttccgtgcga ttccgatttg gaccggcacg
      181 gaagtctccg tgattatcga ccgtcctcgt gatccggttt ggacttatac caacgctaat
      241 gtagtcagcg gttttgaacg ctcatattct gcccgcaaat ctcgccataa tgcggtacaa
      301 gtgacctatt cggataaaac gaatggctat gaaagtgcga ttgaatatgt ctctgacgat
      361 gaagaaataa aaaagcacgg cttaaattta agtcaaatta ccgcctttgg ttgcacctct
      421 cggggacaag cacaccgtac cggtaaatgg attttagaaa ccgaaaaacg agaaaaggaa
      481 accattacct ttaccgttgg acgtgagggc ttaatgcact taccgggcga tattatccgt
      541 gtagccgata gccattatgc cggcacggaa attggcggac gagtgttggc gattaatggg
      601 cgaaaagtta cccttgaccg tgaaattagc attgataacg ccagttattt tacttacatc
      661 aacggtgagg cgacacactc aaccatcaaa atccaatc
//
LOCUS       DANLZD010000272          695 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.273, whole genome shotgun sequence.
ACCESSION   DANLZD010000272 DANLZD010000000
VERSION     DANLZD010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 695)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.273"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>695
                     /locus_tag="PXE26_002626"
     CDS             <1..>695
                     /locus_tag="PXE26_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5595149.1"
                     /translation="FDKWALYDVARYCDQLVPDGMGGMEPRFTCNVWLTEVKTAYDLL
                     NDFCSVFRAIPIWTGTEVSVIIDRPRDPVWTYTNANVVGGFERSYSARKSRHNAVQVT
                     YSDKTNGYESAIEYVSDDEEIKKHGLNLSQITAFGCTSRGQAHRTGKWILETEKREKE
                     TITFTVGREGLMHLPGDIIRVADSHYAGTEIGGRVLAINGRKVTLDREISIDNASYFT
                     YINGEATHSSKIQS"
BASE COUNT          192 a          139 c          176 g          188 t
ORIGIN      
        1 tttgacaaat gggcgttgta tgatgttgct cgctattgcg atcaacttgt gccggacggt
       61 atgggtggaa tggagcctcg tttcacctgt aacgtatggc tcacggaagt taaaactgcc
      121 tatgacttgt tgaatgattt ctgctcggta ttccgtgcga ttccgatttg gaccggaaca
      181 gaagtatcgg tcattatcga ccgtccgcgt gatccggttt ggacttacac aaatgctaat
      241 gtagttggtg gatttgaacg atcctactct gctcgcaaat cacgccataa tgcagtgcaa
      301 gttacttatt cggataaaac aaatggctat gaaagtgcga ttgaatatgt ctctgatgac
      361 gaggaaatca aaaagcacgg cttaaattta agtcaaatta ctgctttcgg ttgtacctct
      421 cgggggcaag cacaccgtac cggaaaatgg attttggaaa ccgaaaaacg ggaaaaggaa
      481 accattactt ttaccgtggg acgtgagggc ttaatgcact tgccgggcga tattattcgt
      541 gtggcagaca gccattatgc cggtacggaa attggcggac gtgtactggc gattaatggg
      601 cgaaaagtca cgttagatcg tgaaattagc attgataacg ccagttattt tacctatatc
      661 aacggtgagg caacgcactc tagcaaaatc caatc
//
LOCUS       DANLZD010000273          679 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.274, whole genome shotgun sequence.
ACCESSION   DANLZD010000273 DANLZD010000000
VERSION     DANLZD010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.274"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>679
                     /locus_tag="PXE26_002627"
     CDS             <1..>679
                     /locus_tag="PXE26_002627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5595150.1"
                     /translation="ESKKQLIELIKKYDSDKEIYSSSSYNESQLRTDFLDPFFGLLGW
                     DITNSKNKLTSEREVIVEEPLKEKVSENVKKPDYTFRFNSQRKFFVEAKKPSVKIKTD
                     PLPAHQVRRYGFTAKLSISVLSNFEYLAIYDCSEIVDVQQDALYARVRLYHYTEYVKF
                     FDEIMNLLGRESVYSGHFDNEWREISQKIENSKQTVDELFFEQINKWRHVLGSELLKI
                     NPCISNNE"
BASE COUNT          260 a           92 c          111 g          216 t
ORIGIN      
        1 tgaatcaaaa aaacaattaa tagagttaat taaaaagtac gatagtgata aagaaattta
       61 ttcttcatcc tcatacaatg agtctcagtt aagaactgac tttttagacc ctttctttgg
      121 tttacttgga tgggatataa ctaactcaaa gaataaactc acatctgaaa gagaagtgat
      181 tgttgaagaa ccactaaaag aaaaagtttc agaaaatgta aaaaaaccag attatacatt
      241 tagattcaat tctcaaagaa agttttttgt tgaagctaaa aagccaagtg tcaaaatcaa
      301 gactgaccct ttacctgctc atcaggtaag acgatatggc ttcacagcaa aattaagtat
      361 ttctgtttta tctaattttg aatatcttgc tatatatgat tgttcagaaa tagttgatgt
      421 acaacaagat gctctatacg caagggtacg attatatcac tatacagaat atgtgaaatt
      481 ttttgatgaa attatgaatc tcttaggtag agaaagtgtt tattcaggtc attttgataa
      541 tgaatggcgt gaaatctctc aaaaaataga aaactctaag caaacagtgg atgaactatt
      601 ttttgaacaa attaataagt ggcggcatgt tctgggtagt gaattactta aaattaaccc
      661 ttgtatttca aacaatgaa
//
LOCUS       DANLZD010000274          668 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.275, whole genome shotgun sequence.
ACCESSION   DANLZD010000274 DANLZD010000000
VERSION     DANLZD010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 668)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.275"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            75..>668
                     /locus_tag="PXE26_002628"
     CDS             75..>668
                     /locus_tag="PXE26_002628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595151.1"
                     /translation="MSKNTHSYLPLQKYHILPIYGISPELIKKSVKDCSRDREKISHC
                     TLLNACSKALGFSGGFAGFQEDYLSNLTQFMEKHGLLYLVDLTKQKYPVNDMCMTRSL
                     ALKKQDISERIFFSGKEIPKRIFTGFNFRYDMHLANGFRIGNSLKTPYSDIGICEDIN
                     EALKNPSIKIDCRDGTIRSMADVVIGRYLDKVLFYYFN"
BASE COUNT          240 a           95 c          108 g          225 t
ORIGIN      
        1 cttttatttc ctagtatggc tgtgattttc acagaggcat ttttctaact taattaacaa
       61 agaggattta atatatgtca aaaaacaccc atagctattt acctttacaa aaataccata
      121 ttctaccaat ttatggtatt tccccagaat taattaaaaa atctgttaaa gattgttcta
      181 gagatagaga aaaaatttct cactgtactt tgttaaatgc ttgctcaaaa gctttaggat
      241 tttctggagg ctttgcaggg tttcaagaag attatttatc taatttgacg caattcatgg
      301 aaaaacatgg gctcttatat cttgtagatt taacaaaaca aaaatatcca gtaaatgata
      361 tgtgcatgac aaggagctta gctctgaaaa agcaagatat atctgaaaga attttcttta
      421 gcggaaagga aatccctaag agaatattta ctggatttaa tttccgatat gatatgcatt
      481 tagctaatgg ttttcgtatc ggaaattcct taaaaacccc atattctgac ataggtatat
      541 gtgaagacat aaatgaagca ttaaaaaatc catcaataaa aattgattgc cgtgatggca
      601 caatcagaag tatggcagat gtagtcatag gtagatatct tgataaagta ttgttttatt
      661 attttaac
//
LOCUS       DANLZD010000275          668 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.276, whole genome shotgun sequence.
ACCESSION   DANLZD010000275 DANLZD010000000
VERSION     DANLZD010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 668)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.276"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            66..>668
                     /locus_tag="PXE26_002629"
     CDS             66..>668
                     /locus_tag="PXE26_002629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595152.1"
                     /translation="MSALINLFYLYDPWFFHFLRMSFVVGLVACGYLVFQIIKGKSNG
                     IIIPKDSLIAIIALIGFSIIPLLINSTKEIGVLAMYVKMLILFVFGIAIYNVFYHNQQ
                     GKTLFVRDLKIGIAIQWICGVTALLGLPFMVDFLLSSNAMMPRFFGSEQEYRLYNITS
                     SAFFQLSIFYLMLLHFLLAYNKKTDVVNEWFLFLLLCVGLI"
BASE COUNT          186 a           94 c          118 g          270 t
ORIGIN      
        1 tccacttaaa aaattactgg caattaaacg taattttact cagcgaaatt cataataggt
       61 ctgaaatgtc agcactcatt aacttatttt atctttacga tccgtggttt ttccattttt
      121 taagaatgtc gtttgtagtc gggcttgttg cttgtggcta tttggttttc caaataatca
      181 agggcaaatc gaatggcatt attattccta aagatagcct gattgcaatt attgcattaa
      241 tcggctttag cattattcca ttattgatta acagtacaaa agaaattggt gtgctggcaa
      301 tgtatgtcaa aatgctgatt ttgtttgtgt tcgggattgc gatttataat gttttttatc
      361 ataaccaaca aggtaaaact ttattcgttc gtgatttaaa aatcggcatt gctattcaat
      421 ggatttgtgg tgtgacagcc ttattaggtt tgccgtttat ggtggatttt ttattatcca
      481 gcaatgcaat gatgccacgt ttttttggtt cggaacaaga ataccgttta tataacatca
      541 cttcttccgc ctttttccaa ttaagcattt tttatttaat gctattacat tttttattgg
      601 catataataa aaaaacagat gtggtgaatg agtggttttt atttttatta ttatgtgttg
      661 gtttaatt
//
LOCUS       DANLZD010000276          665 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.277, whole genome shotgun sequence.
ACCESSION   DANLZD010000276 DANLZD010000000
VERSION     DANLZD010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.277"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..629
                     /locus_tag="PXE26_002630"
     CDS             <1..629
                     /locus_tag="PXE26_002630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595153.1"
                     /translation="LEIIKDDNQIGFGFCEASDLSLIEDETKKIKAAMSLIDDLDPDT
                     SNEIKCFIDTIYLTKEGLNGERFMRSGTNFYMWGMMFLYINKEHSILYYADHIIHECA
                     HTALNIINATDELVTNSADERFKAPLRKDTRPMIGLFHALFVLHRICSSFQKMKEKID
                     DVYYDEFNHRLNDNLLKLHETYQTVRENAKTTEIGEKILNEIAKTWKL"
BASE COUNT          242 a           83 c          118 g          222 t
ORIGIN      
        1 tcttagaaat tattaaagat gataaccaaa ttgggtttgg attttgtgag gctagtgatt
       61 tatctttaat tgaggatgaa actaaaaaaa tcaaggcagc aatgagctta attgatgatt
      121 tagaccctga tacttctaac gagataaaat gtttcattga tacaatttat ttaacaaaag
      181 aaggccttaa tggcgagcga tttatgcgtt ctggcacaaa tttttatatg tggggaatga
      241 tgtttttgta tataaataag gaacactcta ttctttatta tgcagatcat ataattcatg
      301 aatgtgctca tacagctctt aacattataa atgcaactga tgaattagta acaaattcag
      361 ctgatgaacg ttttaaagca cctttaagaa aggatactcg tcctatgatt gggctatttc
      421 atgcgttgtt tgtactccat agaatatgtt cctcctttca aaaaatgaaa gaaaagatag
      481 atgatgttta ttatgatgaa tttaaccata gattaaatga taacctgttg aagttacatg
      541 aaacatacca gactgttaga gaaaatgcaa aaacgacaga gattggtgag aaaattttaa
      601 atgaaattgc caaaacttgg aaactttaat caatctgaaa ttatgatgag aatgttagtt
      661 ttctt
//
LOCUS       DANLZD010000277          656 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.278, whole genome shotgun sequence.
ACCESSION   DANLZD010000277 DANLZD010000000
VERSION     DANLZD010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 656)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.278"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..574
                     /locus_tag="PXE26_002631"
     CDS             <1..574
                     /locus_tag="PXE26_002631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5595154.1"
                     /translation="HSNHSNHSNHSNHSNHSNQSANQYIFNSDWFTHNVPSLASIFEY
                     VKPRRILEIGSFEGRSSVFFIEEALKYQSQVEIHCIDSWEGGAEHQGVWDMGEIEQRF
                     IHNVTLAQQKFQNVVLYKHRGYSHQKMIELLANGYINYFDYIYIDGSHEAPDVLFDAL
                     LAHRLVRKGGVISFDDYLWSPDETGKQRHY"
BASE COUNT          212 a          122 c          118 g          204 t
ORIGIN      
        1 ccattccaac cattccaacc attccaacca ttccaaccat tccaaccatt ccaaccagtc
       61 agccaaccaa tatattttta actctgattg gtttactcat aatgttcctt cattagcttc
      121 tatttttgaa tatgtaaaac ctcggaggat tttagaaatt ggatcatttg aaggtagatc
      181 atctgtcttt ttcattgaag aagcattgaa atatcaatca caagttgaaa ttcattgtat
      241 tgatagttgg gaagggggag cagagcatca aggagtttgg gacatgggag aaatagaaca
      301 acgatttatc cataatgtca ctcttgcgca acagaaattc caaaatgttg tgttatataa
      361 gcaccgtggc tattctcacc aaaaaatgat tgaacttctc gcaaatggat atataaatta
      421 ttttgactat atttacatag atggatctca cgaagcgcca gatgtgttgt tcgatgcttt
      481 acttgcacat cgtttagtga gaaaaggagg cgttattagt tttgatgatt acctttggtc
      541 accagatgag acaggtaaac agcgtcatta ttagtaaaac ccgctgttga tcactatgtc
      601 aatacctatc agcagaaagt gcatgtaata caaggtttaa tagcttatca gcaaca
//
LOCUS       DANLZD010000278          651 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.279, whole genome shotgun sequence.
ACCESSION   DANLZD010000278 DANLZD010000000
VERSION     DANLZD010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 651)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.279"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            315..>651
                     /locus_tag="PXE26_002632"
     CDS             315..>651
                     /locus_tag="PXE26_002632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HDL5595155.1"
                     /translation="MEGEYKLKADVTIYHDTPYTKVLFGSTYIEILDDDQYYFSILEK
                     RRWKLENLPDELVDVLKEYNLFVKTYIHEYENTELEKNIYLIESLIDSKSHKTPIDIQ
                     KQLSSTKILL"
BASE COUNT          217 a           99 c          107 g          228 t
ORIGIN      
        1 tcatttcgta ggctcaaatt agacctacta cgccgatata aaaagttggt ctttttatat
       61 caaagctaag ctcttaacaa cgagtagtag attctctaat atgtttagct gtaactttca
      121 ttggcttttg ttgcgctgta gtgtttttca tattgttctc cagattttgt gagtaattag
      181 taagaccttt tcttttgaaa aggaccgagc tttcaaagtg gtctgattac ctattgagca
      241 atcagcttgc ttttcaagcc ccatgtcatt atatcataac cattgttttt agtcaatacc
      301 attttgggga atgcatggaa ggcgagtaca aattgaaggc tgatgtcacg atctatcatg
      361 atacgcctta tacaaaagtt ctctttggaa gtacatatat tgagatttta gacgatgacc
      421 agtattactt ttcgatttta gaaaaacgaa gatggaagtt agaaaattta cctgatgaat
      481 tagttgatgt actaaaagag tataatcttt ttgttaaaac gtatattcat gaatatgaga
      541 atacagaatt agaaaaaaat atatacttaa ttgagagttt aattgattca aaatctcata
      601 aaacaccaat agatattcaa aaacaactat cgtctactaa aattctccta t
//
LOCUS       DANLZD010000279          647 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.280, whole genome shotgun sequence.
ACCESSION   DANLZD010000279 DANLZD010000000
VERSION     DANLZD010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 647)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.280"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..529)
                     /locus_tag="PXE26_002633"
     CDS             complement(<1..529)
                     /locus_tag="PXE26_002633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5595156.1"
                     /translation="MPNFSFTHLYKKHTKELPTVTLLSALIGLSQVSYANPLPLGNTT
                     GTNNLAVGEGSFALGTGSQAIGKNAIATGGNISPQEFNVELENFRDLVNQIEELRTQI
                     AEQEKQGSVNQQLQDALKSQIAQYDTILERVREKQAQQAILANSVISMRKELVNRRNQ
                     LTELENNFNTSFLTGK"
BASE COUNT          191 a          108 c          114 g          234 t
ORIGIN      
        1 tttttcctgt taaaaaacta gtattaaaat tattttccaa ttctgttaac tgatttcttc
       61 tattaactaa ttctttccgc attgatataa cactattggc taatattgct tgttgtgctt
      121 gtttttcacg tacacgctct aaaatagtgt catattgagc aatctgactc tttaaagcat
      181 cttgtaattg ttgattaaca gagccttgtt tttcttgttc agcaatttga gtacgtaact
      241 cttcaatttg attaactaaa tcacggaagt tttctaactc cacattgaat tcctgggggg
      301 agatattacc accggttgca atggcattct tgccgattgc ttgagaacct gtgcctaacg
      361 caaaactacc ttcacctaca gcaaggttat tggtgccagt ggtgttgcct aaaggaagtg
      421 gattggcata agagacttgg ctaagcccta tcagagcgct aagcaaggta acagtaggga
      481 gctcttttgt gtgtttttta tacagatggg tgaaactaaa gtttggcata tcaaaatttc
      541 ctcattaaaa cttttacttt tcattcttaa aaaaatgctc cgtgtcataa tatttaattt
      601 gattaaatga aataggaaaa gattaaattt gtgaaaatat tttgagt
//
LOCUS       DANLZD010000280          646 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.281, whole genome shotgun sequence.
ACCESSION   DANLZD010000280 DANLZD010000000
VERSION     DANLZD010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.281"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..296
                     /locus_tag="PXE26_002634"
     CDS             <1..296
                     /locus_tag="PXE26_002634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595157.1"
                     /translation="DTRYNKNGQGAVSERNIIDAKNRFKASHPYAKIISCVRGSETYV
                     TRPAKANATTKSVKEKQSQPQESSSLSSMLLGAAVTAGVGFVANKWFSKKDNT"
     gene            324..>646
                     /locus_tag="PXE26_002635"
     CDS             324..>646
                     /locus_tag="PXE26_002635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595158.1"
                     /translation="MAGLLPPYFKKKNSDHYKDAVKQFGKEQVDEVIAQCDELESWVK
                     EMPTKQLIMYVGCFHTFNKLSQSKAYVQENFPNVLENPFLFQTLSAASHNELKINRGY
                     KFKEK"
BASE COUNT          242 a          105 c          116 g          183 t
ORIGIN      
        1 cagataccag atataacaag aatgggcaag gtgctgtttc tgaaagaaat attatagatg
       61 ctaaaaatcg ttttaaagcg agccatccat acgcaaaaat tatttcttgt gttagagggt
      121 ctgagacata tgtaacacgt ccagcaaaag ctaatgctac aacaaaatct gtcaaggaaa
      181 agcaatctca accacaagaa agttcatcgc tcagttcaat gttacttggt gcggctgtaa
      241 ctgctggggt tggttttgta gccaataaat ggtttagcaa aaaagataac acttaattta
      301 tctctaacca atgtggagta aaaatggctg gattattacc accttatttc aaaaagaaaa
      361 atagtgatca ctataaagat gctgtaaaac aatttgggaa agaacaagtt gatgaggtta
      421 tagcacagtg tgatgaactt gaatcttggg taaaagaaat gccaacaaaa caacttatta
      481 tgtatgttgg ttgtttccat acttttaaca aattatctca atctaaagct tatgttcaag
      541 agaactttcc aaacgtactg gaaaacccgt ttcttttcca aacactttcg gcagcgtctc
      601 ataatgaact taaaataaat cgaggatata aattcaaaga aaaaat
//
LOCUS       DANLZD010000281          641 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.282, whole genome shotgun sequence.
ACCESSION   DANLZD010000281 DANLZD010000000
VERSION     DANLZD010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.282"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>641
                     /locus_tag="PXE26_002636"
     CDS             <1..>641
                     /locus_tag="PXE26_002636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5595159.1"
                     /translation="KKCIANYFAFDQKIQLNTQTNQTLEAIAQAIFKSWFVDFDPVRA
                     KAAALSEGKSEHEANLAAMSVICGKDTSELNDTEYKALWQIAEAFPSEFGDEGLPIGW
                     KFNQADNLFDVGIGKTPPRKESEWFSDNANDTEWISIKDMGNQGLFITESSEYLKAEA
                     VDTFNIKRIPENTVILSFKLTVGRVSITTKETTTNEAIAHFKIPSSSNLSSEF"
BASE COUNT          227 a          123 c          125 g          166 t
ORIGIN      
        1 aaaaaatgta ttgctaatta ttttgccttt gaccaaaaaa tccaactcaa cacccaaacc
       61 aaccaaaccc tagaagccat tgcacaggca atcttcaaaa gctggtttgt ggattttgac
      121 cctgtgcgcg ccaaagccgc cgccctaagc gaaggcaaaa gcgaacacga agccaacctt
      181 gcggcaatgt cggtgatttg tggtaaagac accagcgagt taaacgacac cgaatacaaa
      241 gcgctttggc aaatcgccga agccttccca agtgagtttg gagatgaagg gttacctatt
      301 ggctggaaat tcaatcaagc agacaattta tttgatgttg gtattgggaa aaccccacca
      361 agaaaagaga gtgaatggtt ttctgataat gcaaatgata cagaatggat ttctattaaa
      421 gatatgggaa atcagggatt atttatcaca gaaagtagcg aatatctaaa agctgaagcc
      481 gtagatacat ttaatattaa aagaattcct gaaaatactg taattttgag ttttaaatta
      541 accgttggta gagtttcaat tacgacaaaa gaaacaacta ctaacgaagc tattgctcat
      601 tttaaaattc ctagctcatc aaatctaagc tcagagtttt t
//
LOCUS       DANLZD010000282          630 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.283, whole genome shotgun sequence.
ACCESSION   DANLZD010000282 DANLZD010000000
VERSION     DANLZD010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 630)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.283"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..626
                     /locus_tag="PXE26_002637"
     CDS             <1..626
                     /locus_tag="PXE26_002637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5595160.1"
                     /translation="RIGNSEVITGYSAHQGEFKNMKRVKVVFTAPTSGCIRFALRLDN
                     IQGKANPFLFARRPMLEEASDNVTDITQPSPWQNAGVTAIHGGSIVTNTVTAQQIAAN
                     TITANEIAAGTIAARNMAANSINASHIVGSSITADKLNVNNLAAISANLGAITAGSIN
                     INNRFKVSNAGVVEMRANSGNVGMVMNNNSIIVYDEQGRVRVKMGKL"
BASE COUNT          204 a          109 c          141 g          176 t
ORIGIN      
        1 gtcggatagg caacagcgag gtaattactg gctatagtgc tcatcaaggc gaatttaaaa
       61 atatgaaacg ggttaaggtt gtatttactg cacctacttc aggctgtatt cgtttcgcat
      121 tacgattaga taatattcaa ggtaaagcta atccattttt atttgctcgt agaccaatgc
      181 ttgaggaggc tagtgataat gttacagata tcactcagcc tagcccttgg caaaatgccg
      241 gtgtaaccgc tatccacggt ggctcaatag ttactaatac cgttactgct caacaaattg
      301 cagcaaatac cattaccgcc aacgaaatcg cagccggcac gattgcagct cgaaatatgg
      361 cagcaaactc gattaatgca agtcatattg tagggagttc gatcactgcg gataagctaa
      421 atgtaaacaa tttagcggca atatcagcga atctcggagc tattacagct ggttctatta
      481 atatcaataa tagattcaag gtaagtaatg ctggagtagt cgaaatgcga gccaatagtg
      541 gaaatgttgg tatggtaatg aataacaata gtattattgt ttatgatgaa caaggtaggg
      601 ttagagtaaa aatggggaaa ttatgattct
//
LOCUS       DANLZD010000283          615 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.284, whole genome shotgun sequence.
ACCESSION   DANLZD010000283 DANLZD010000000
VERSION     DANLZD010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.284"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>615
                     /locus_tag="PXE26_002638"
     CDS             <1..>615
                     /locus_tag="PXE26_002638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDL5595161.1"
                     /translation="RNIMAHELGRENPLAYEDYSLINQKFLKFQWKSNYAYANWLETT
                     ANKIKRSKDDSIEWHRKNEKEIPFWVITETWDFGALSKFYSLLNGQHQRKIAKKFNVD
                     ENTLKNWLNEINIVRNLSAHHSRIWNRKFSDIAIPKLDDPRWSKFKKMQQYFSNLSLD
                     DKAKERIFGRVAILWFLVSQTSTNYHWLDKFEDLLNDFPNLPNTK"
BASE COUNT          219 a           83 c          115 g          198 t
ORIGIN      
        1 cgtaatatta tggctcatga attggggcgt gaaaatcctt tggcttatga agattattct
       61 ctgattaatc aaaagttctt aaaatttcaa tggaaatcta attatgctta tgcaaattgg
      121 ctagaaacta cagctaataa aattaagcgt agtaaagatg attctattga atggcataga
      181 aaaaatgaga aggaaatccc tttttgggta attactgaaa cctgggattt tggtgcatta
      241 tctaagtttt actcattgtt aaatgggcaa caccaaagga aaattgctaa gaaatttaat
      301 gtagatgaga atacgttaaa gaattggttg aatgaaataa acattgtaag aaacctttct
      361 gctcaccatt ctcgtatttg gaacagaaaa tttagcgata ttgctattcc taagctagat
      421 gatcctcgtt ggtcgaaatt taaaaaaatg cagcagtatt tttcaaactt atcgctggat
      481 gacaaagcaa aggagagaat tttcggaagg gtagctattc tgtggttttt agttagtcaa
      541 accagcacta attaccattg gttagataag tttgaagatt tattaaatga cttccctaat
      601 ttaccgaata caaaa
//
LOCUS       DANLZD010000284          593 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.285, whole genome shotgun sequence.
ACCESSION   DANLZD010000284 DANLZD010000000
VERSION     DANLZD010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.285"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..>593)
                     /locus_tag="PXE26_002639"
     CDS             complement(<1..>593)
                     /locus_tag="PXE26_002639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015483985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5595162.1"
                     /translation="RILVDAYYEDGTTGGGEFVADLQDLVTPDDGGVCFVVNNNGGRW
                     KRVDLSHLTLFDFWAVGDGVTNDESAFVNAMRYSQFFIENGTFRINNAVNSVRDNVKI
                     LGNKTGKLVLGAGIQQAGAEVFNINHSNYFISGFCIETPNKAIGIRFKSLDDAGVKNL
                     HIDNVVFNGTFYGVRAGESIQADTNYPTDNVIVQNCQS"
BASE COUNT          193 a          150 c           89 g          161 t
ORIGIN      
        1 gattggcagt tttgtacaat cacattatca gttgggtaat tagtatccgc ctgaatactt
       61 tcacctgccc tgaccccgta gaaggtgcca ttaaacacaa cattgtcaat atggagattt
      121 ttaacaccag catcatccaa agacttaaat cgaataccaa ttgctttgtt cggtgtttca
      181 atacaaaaac ccgagataaa ataattgctg tgattaatat taaaaacttc ggcccctgct
      241 tgctggatac ctgcacctaa tactaatttg ccggtcttat tgcccaaaat tttcacatta
      301 tcgcgaacag aattaacggc attgttgata cgaaatgtac cgttttcgat aaaaaattga
      361 gaatatctca tagcatttac aaatgctgat tcatcatttg ttaccccgtc accgacggcc
      421 caaaaatcaa ataatgtaag atgtgaaagg tcaacacgct tccaccgccc cccattatta
      481 ttcacaacaa aacaaacccc accatcatca ggcgtaacta aatcctgcaa atcagccaca
      541 aactccccac cgcctgttgt gccgtcctca tagtaagcat ccaccaaaat acg
//
LOCUS       DANLZD010000285          580 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.286, whole genome shotgun sequence.
ACCESSION   DANLZD010000285 DANLZD010000000
VERSION     DANLZD010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.286"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..>580)
                     /locus_tag="PXE26_002640"
     CDS             complement(<1..>580)
                     /locus_tag="PXE26_002640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595163.1"
                     /translation="LMLCSLWFLSACFNESYDFRGKEFEEPVQAILVESDKIYFIGST
                     IDAIFDKTLIDNTKASDVIYFLNKLLQSPYGRKISNHLITLAIYDENIQIQYSPQFIA
                     KNLTMSDIQALQKLGFQFSHSKEYLWKSYAGLGGKITQFKNRKEILEKYKFKQPIIAK
                     AKSYQKSIEFSFDDTISVIAAPITIPASIILFV"
BASE COUNT          186 a           92 c           94 g          208 t
ORIGIN      
        1 tacaaataaa ataatagatg cgggaatcgt aattggtgct gcaatgaccg aaatggtgtc
       61 atcaaagcta aattctatgc ttttctgata acttttcgct ttagcgatta taggttgctt
      121 aaatttatac ttttctagta tttccttgcg atttttaaac tgtgtgattt taccaccaag
      181 acctgcatag cttttccata gatattcttt tgaatggcta aattgaaaac ctaacttttg
      241 tagagcttga atatcgctca tggtgagatt ttttgcaata aattgcggac tgtactgaat
      301 ttgaatattt tcatcataaa tggctaaagt aattaggtga ttactgatct tccttccata
      361 cggactttga agaagtttat tcaaaaaata aataacatct gaagcttttg tattatctat
      421 cagcgtttta tcaaatatcg catcaattgt ggaaccaatg aaataaattt tatctgattc
      481 aaccaaaatt gcttgtacag gttcttcaaa ttcttttcct ctaaaatcat aactttcgtt
      541 aaagcatgcg gagagaaacc atagtgagca gagcattaag
//
LOCUS       DANLZD010000286          577 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.287, whole genome shotgun sequence.
ACCESSION   DANLZD010000286 DANLZD010000000
VERSION     DANLZD010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 577)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.287"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
BASE COUNT          180 a           98 c          114 g          185 t
ORIGIN      
        1 caactacctc taaggatagc cgtcgcttct caggagttat gcgacttatt aagtgctgtt
       61 atatacagcg tcttaaattg aggataattt agtcatattg aatcataaag ttaattgaga
      121 attgaatttt gattttagag aattggaaat gacaacaccg ttgataaatc acttaccaac
      181 ggtgttgtac ttttgaagaa taaatgaaat ttaagttaga ccaatataag ttactatatt
      241 gaaaatagca gcaccttcgt gacaatgttg atattttcgt tcgtaattta cccgattacc
      301 ttgtggtctt taatcggcat atctgtggca tcatcgagga cacaaacggc accctttatt
      361 cacctgtggg ctcaggctaa gaaaagtgag caatgattgc aatgtcataa tatccccaag
      421 tcgggtaata ttatgacatt gcaatcacgc atgtgacaaa atacaacgga taaagtggct
      481 ggcattatcc atttattgtt taggtggcat tcctgtaatt ttacagagtt ccctttcaga
      541 atgctgggag acatttcggc tggtatagat tgataac
//
LOCUS       DANLZD010000287          563 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.288, whole genome shotgun sequence.
ACCESSION   DANLZD010000287 DANLZD010000000
VERSION     DANLZD010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.288"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..508
                     /locus_tag="PXE26_002641"
     CDS             <1..508
                     /locus_tag="PXE26_002641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595164.1"
                     /translation="SERIISASIEFSNYFANKYSENIEEGIKNAEKEFKKNYNKSLRY
                     NAKKAQQRVQKYVEKVNQKNPQALKDLDNISNLKKINENLKKAAKFTGIISSIKDYYD
                     LAEGFRNGIKSNDWEPFLKTSAQIGASALMSMLVASMITGPTTIGSIIISAAFISIGG
                     YIISLASR"
BASE COUNT          221 a           80 c           97 g          165 t
ORIGIN      
        1 atcagagagg attatatcag ccagtattga attcagtaac tattttgcta ataagtactc
       61 tgaaaacatt gaagaaggca ttaaaaatgc agaaaaagaa tttaaaaaga attataataa
      121 aagtctaaga tataatgcta aaaaagcaca gcagagggtg caaaaatatg tcgaaaaagt
      181 caaccaaaag aatcctcagg cactaaaaga tctcgataac atatccaact taaaaaaaat
      241 taatgagaat ttaaaaaaag cagcaaaatt tactggtatt attagcagta ttaaggatta
      301 ttacgatcta gcagaagggt ttagaaatgg cataaagtct aatgattggg aacctttttt
      361 aaagacatct gctcagatag gtgcttcagc tttaatgagt atgttagtag cctcaatgat
      421 aacaggccca acgacaattg ggagtattat tattagtgct gcatttattt ctataggggg
      481 atatattatt tcactagctt cccgttagat agtctttgtt atactcaata acctactata
      541 ctacctatag gctattgaac tat
//
LOCUS       DANLZD010000288          560 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.289, whole genome shotgun sequence.
ACCESSION   DANLZD010000288 DANLZD010000000
VERSION     DANLZD010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 560)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.289"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..539)
                     /locus_tag="PXE26_002642"
     CDS             complement(<1..539)
                     /locus_tag="PXE26_002642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5595165.1"
                     /translation="MGRPELERAVLSVQNQTYPCKHYVFVDGEKYHQQAADILKNFPS
                     VIVTYLPMNTGADGWVNSSINAIAPFLVKEDIICYLDDDNWFEPTHVESGVHALLEMQ
                     SDYAYSLRNFYDLDGEFLCIDTIESLGEYNCVYQEPLECNYQLGGVKGVLSINLNDCQ
                     HIDTNCYFIRSEIARLISTA"
BASE COUNT          205 a          115 c           74 g          166 t
ORIGIN      
        1 gccgtactga taaggcgagc tatctcacta cgaataaaat agcaattcgt atcaatatgc
       61 tgacaatcat tcagatttat tgataaaaca cctttaacac cacctaattg ataattacat
      121 tctaatggtt cttgataaac gcaattatat tctcccaacg attcaatcgt atcaatacac
      181 aaaaactcgc catctaaatc ataaaaatta cgtaaagagt aagcataatc agattgcatt
      241 tctaataaag catgcacacc agattcaacg tgagtaggtt caaaccaatt atcatcatcc
      301 agataacaaa taatatcttc tttcactaaa aatggtgcaa ttgcattaat gctgctattt
      361 acccaaccat cagccccggt attcattggg agataagtaa caataacact tggaaaattc
      421 tttaaaatat cagccgcttg ttggtgatat ttctctccat caacaaaaac ataatgttta
      481 caaggataag tctgattttg tacgcttaaa acagctcttt ctaattcagg acgaccaatt
      541 gttgaactga taacagctac
//
LOCUS       DANLZD010000289          548 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.290, whole genome shotgun sequence.
ACCESSION   DANLZD010000289 DANLZD010000000
VERSION     DANLZD010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 548)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.290"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
BASE COUNT          180 a          110 c           80 g          178 t
ORIGIN      
        1 acgaggtaat acttcattga tagccttcca agaaagtaaa tcttgctact ctatagcacc
       61 tttcattaaa agtggttgtt tctcagaata actttcacga aattcttgat aagaaattgg
      121 aaattgaatt ttcattttca tctccactag ccttgataat ctgtaccatc accacaatcg
      181 tagtttgagc cagattggtt attattcgtt ctacctggaa ctccaaacgt aggctttatt
      241 ggtaaagatg atggaattaa ttcttttaca ccgctaggta aagaattttc atgtattgta
      301 ataggtaggc tcctcgctaa atcaagggct aaattaacag aagtactgga taaaccgcct
      361 aaagcccccc tcttgcaaac cctgtagcaa aagcaacgcc ataagataca agatctggtt
      421 gattagcctt attttcagaa ttccctccaa ctactaagct taattgtaaa attgatggtt
      481 ctttcatttc attctccctt taatctaatt ctgatcacaa aaaccaatat taaaaataat
      541 tctaaaaa
//
LOCUS       DANLZD010000290          541 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.291, whole genome shotgun sequence.
ACCESSION   DANLZD010000290 DANLZD010000000
VERSION     DANLZD010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.291"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..>541)
                     /locus_tag="PXE26_002643"
     CDS             complement(<1..>541)
                     /locus_tag="PXE26_002643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595166.1"
                     /translation="DDWVKINDFPDVSNLLEVTINDEQWLVLERHDDFRELAKFGQKE
                     TYDRQMWLQIRSYLVKESQFSKAKNWLAQQDFMERWMPEGNEHYGMNIHQFFAENTLN
                     EWQEIYRHRENKSPSFKVIPSVDSHTWESTYGNDGISFYAPIPMLYHGMKMKNAIKDG
                     YWVDLQNNLVCFNPEINEKF"
BASE COUNT          171 a          106 c           65 g          199 t
ORIGIN      
        1 gaaatttttc atttatctct ggattaaagc aaaccaaatt attttgtaaa tcaacccaat
       61 aaccatcttt aatcgcattt ttcattttca ttccgtgata aagcatagga attggcgcat
      121 aaaatgaaat gccgtcattg ccataagtag attcccaagt gtgagaatcg acactaggta
      181 ttaccttaaa tgaaggcgat ttattttccc tatgtcgata aatttcttgc cactcattta
      241 atgtattttc ggcaaaaaat tgatgaatat tcattccata gtgttcatta ccttctggca
      301 tccatctttc cataaaatct tgttgtgcca accaattttt tgcttttgaa aattgagatt
      361 ctttaactaa ataacttcta atttgtaacc acatttgcct atcataagtt tctttttgcc
      421 caaattttgc taattcacga aaatcatcgt gtctttctag aacaagccac tgttcatcat
      481 taatcgttac ttccaaaaga ttactaacat caggaaaatc atttattttt acccaatcat
      541 c
//
LOCUS       DANLZD010000291          541 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.292, whole genome shotgun sequence.
ACCESSION   DANLZD010000291 DANLZD010000000
VERSION     DANLZD010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.292"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            26..226
                     /locus_tag="PXE26_002644"
     CDS             26..226
                     /locus_tag="PXE26_002644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5595167.1"
                     /translation="MNLTSYLSDRPRGFKADFAKKLGISKSYLRQVETGYSPMPAYLA
                     KKIEEVTNGEVAKSELRPDLWD"
     gene            247..378
                     /locus_tag="PXE26_002645"
                     /pseudo
     CDS             247..378
                     /locus_tag="PXE26_002645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250081.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
BASE COUNT          166 a           97 c          117 g          161 t
ORIGIN      
        1 taatttttac ttaacgggag tgttaatgaa cttaactagt tatttgtcag atcgccctcg
       61 tggtttcaaa gctgactttg caaaaaagct tggtatttcc aaatcttatt tacgacaagt
      121 tgaaacaggg tattcaccaa tgccagccta tcttgctaag aaaattgaag aagtcacgaa
      181 tggcgaagta gccaaatctg agcttcgccc cgatctgtgg gattaattta cccaaaggaa
      241 tgtgcaatgc cacgcaatga attaacaaaa aatgcaagag caatcggact gagtgaatta
      301 caatttagcc gtacatttgc agataatgtg gaaatggtgg cggtgattat tgattactta
      361 agtattgagc ttgcggatat tcgtttcgca ttacgattag ataatattca aggtaaagct
      421 aatccatttt tatttgctcg taggctaatg cttgaggagg ctagtgataa tgttacagat
      481 atcactcagc ctagcccttg gcaaaatgcc ggtgtaaccg ctattcacgg tggctcaata
      541 g
//
LOCUS       DANLZD010000292          540 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.293, whole genome shotgun sequence.
ACCESSION   DANLZD010000292 DANLZD010000000
VERSION     DANLZD010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.293"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>540
                     /locus_tag="PXE26_002646"
     CDS             <1..>540
                     /locus_tag="PXE26_002646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1983 domain-containing protein"
                     /protein_id="HDL5595168.1"
                     /translation="IDTVNASVGSNSSKITQVSNAVASVDGKLSATHTIKTETIAGGR
                     KAIAGIAFGATADNRNAESSVIVMADKFEVVKNAQDGTPVRLFGVVENKVAINGNLIA
                     TGSISGDHINANSVRTAVLTAGAIKTEHLAAGQISADKLAIGLGGNLLVNPIFATPDL
                     SIAPFGWNYWRGEVGDRLNI"
BASE COUNT          160 a          107 c          140 g          133 t
ORIGIN      
        1 attgatacgg tcaatgcctc agtcggatca aactcatcta aaattaccca agtcagcaat
       61 gcggtagcaa gtgtggacgg caaattatct gctacccata ccatcaaaac cgaaaccatt
      121 gccggtggac gcaaagcgat tgccggtatt gcatttggtg caacggcaga taaccgtaat
      181 gcggaatctt ctgtgattgt gatggcagat aaatttgagg tcgtgaaaaa cgcccaagac
      241 ggcacgccag taagactatt tggcgtggta gaaaataaag tagcgattaa tgggaattta
      301 atcgcaacag gctcgatttc aggagaccac atcaatgcaa attccgtcag aactgctgta
      361 ttgactgcag gagcgattaa aacggagcat ttggcagcag ggcaaatatc ggcggataag
      421 ttagcgattg ggctaggtgg gaatttgctg gttaatccta tttttgcaac acccgatttg
      481 tcaatagctc cgtttggctg gaactactgg cgaggagaag ttggtgatcg gctaaatatt
//
LOCUS       DANLZD010000293          529 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.294, whole genome shotgun sequence.
ACCESSION   DANLZD010000293 DANLZD010000000
VERSION     DANLZD010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 529)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.294"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>529
                     /locus_tag="PXE26_002647"
     CDS             <1..>529
                     /locus_tag="PXE26_002647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5595169.1"
                     /translation="LVTAIPNFLEKVNNDFAISARNRDLYSHYLPYQGIDDWENSNFN
                     FRTLNGVYYDDNLTSTELLRKFMIQRDYNTLYALSSARTGNADSLAKNYHLVVAKMSY
                     ENLKKELSKKPDSTFNKLKKLYETNGEFLNEYILDNFRGNPLELLTVPALKESLENQE
                     SFPSRLYQKFNIFNQA"
BASE COUNT          192 a           90 c           84 g          163 t
ORIGIN      
        1 ttagtaacag ccattcctaa cttcctggag aaagttaata atgattttgc tataagtgct
       61 agaaatagag acttatatag tcactacctt ccttatcagg gtattgatga ttgggagaat
      121 tctaatttta actttcgaac actaaatgga gtttattatg atgataatct aacttcaaca
      181 gaactcctgc gaaaatttat gattcaaaga gattataaca ctctttatgc tctaagttct
      241 gctcgcacag gaaatgctga tagtctggct aaaaattacc atcttgtagt tgcgaaaatg
      301 tcctatgaaa acctgaaaaa agaattatcc aagaaacccg actctacatt taataaactg
      361 aaaaagctgt atgaaaccaa tggtgaattc ttaaatgaat atattttaga caatttccga
      421 ggaaatccac ttgaattatt aacagtacct gcgcttaaag aaagtttaga aaaccaagag
      481 tcattcccta gcaggctgta tcagaaattt aatattttca accaggcta
//
LOCUS       DANLZD010000294          522 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.295, whole genome shotgun sequence.
ACCESSION   DANLZD010000294 DANLZD010000000
VERSION     DANLZD010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.295"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>522
                     /locus_tag="PXE26_002648"
     CDS             <1..>522
                     /locus_tag="PXE26_002648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011150324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HDL5595170.1"
                     /translation="IFISAGGVRSIWLRHNLANFKQRLNALEKAVAEKGIILSENQVQ
                     ALERKKEDDVACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLY
                     TMKTAISAADMLNDKVLPFFESQGLPMLRILTDRGSEYCGKVENHDYELYLAINDIEH
                     TKTKVKHPQTNGIC"
BASE COUNT          161 a           94 c          125 g          142 t
ORIGIN      
        1 atttttattt cagcaggtgg tgtgcgttct atttggctac gccataatct cgctaacttt
       61 aaacagcgtt taaatgcgtt agaaaaagca gtggctgaga aaggcattat tctgagtgaa
      121 aaccaagttc aagccttgga gcgtaaaaaa gaagacgatg tggcttgtgg cgaaattgaa
      181 acggctcatc cgggctatct aggttcacaa gataccttct atgtggggaa tcttaagggg
      241 gttggacgca tttatcaaca gacctttatt gatacttata gtaaagtcgc atttgcaaaa
      301 ctgtatacga tgaagacagc aattagtgca gcagatatgc tcaatgataa agtcctaccg
      361 ttctttgagt cccaaggatt accgatgttg cgtattctta ccgaccgagg cagtgagtac
      421 tgtggcaagg tggaaaatca cgattatgag ctttatttag cgataaatga catagagcat
      481 acgaaaacga aagtgaagca tccccagacg aatggtatct gc
//
LOCUS       DANLZD010000295          522 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.296, whole genome shotgun sequence.
ACCESSION   DANLZD010000295 DANLZD010000000
VERSION     DANLZD010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.296"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..>522)
                     /locus_tag="PXE26_002649"
     CDS             complement(<1..>522)
                     /locus_tag="PXE26_002649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595171.1"
                     /translation="LNKSNIDFARIAFDSIRSAQNCTVLGLDISKFFDHIDHKILKDM
                     WCKVLGVPSLPEDHHSVFKAITKFVKVDRDTVFEFFNISLHNPRKNGKNRICSPREFR
                     EYRKLKKPDLFNDNPAFFINKGQKGIPQGSPISALLSNIYMLEFDVLVKEKIMECKGS
                     YFRYCDDILCIIP"
BASE COUNT          180 a           97 c           70 g          175 t
ORIGIN      
        1 taggaatgat acatagaatg tcatcacaat aacgaaaata actccctttg cactccataa
       61 tcttttcttt aactaacaca tcaaactcta acatatagat attggataac aatgcactta
      121 ttggagaacc ttgaggaatc cctttctggc ctttattaat aaaaaaagct ggattatcat
      181 taaataagtc aggtttcttt aatttcctat attctcgaaa ttcccgaggg ctacaaattc
      241 tattcttccc atttttccta ggattatgaa gggagatatt aaagaattca aatacagtat
      301 ctctatctac ttttacgaat ttagtaatag ccttaaatac agaatgatgg tcttcaggta
      361 aactaggtac acccaaaact ttacaccaca tatctttcag aattttatgg tctatatggt
      421 caaagaactt agatatatct agccctaaaa ccgtgcaatt ttgagcgctt cgaatactat
      481 caaaagcgat tctggcaaaa tcaatattgc ttttatttag tt
//
LOCUS       DANLZD010000296          459 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.297, whole genome shotgun sequence.
ACCESSION   DANLZD010000296 DANLZD010000000
VERSION     DANLZD010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.297"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..>459)
                     /locus_tag="PXE26_002650"
     CDS             complement(<1..>459)
                     /locus_tag="PXE26_002650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISMha2 family transposase"
                     /protein_id="HDL5595172.1"
                     /translation="QHKLIELFVAGVTARTAAELVNVNKTTAAYYFHRLRLLIYQHSP
                     HLEMFEGEIEADESYFGGARKGKRGCGAAGKTAVFGLLKRDDKVYTVVVPNTQSATLL
                     PIIREKVKPDSLVYADFYRSYDVLDVSEFNHFRINHSTHFAENHNHINGIE"
BASE COUNT          127 a          106 c           96 g          130 t
ORIGIN      
        1 ctcaattccg ttaatgtgat tgtgattttc agcgaagtgt gtgctgtgat tgatacgaaa
       61 atggttaaat tcactcacat caagcacatc atagcttcga taaaaatcgg cgtaaacaag
      121 gctgtctggc ttcactttct cccgaataat cggcaaaagt gtggcagatt gcgtatttgg
      181 tacgacaacg gtataaacct tgtcatcacg ttttaacagc ccaaatacgg cagttttgcc
      241 tgcggcacca caccctcgtt tacctttgcg agcaccaccg aaataacttt cgtccgcttc
      301 aatttcaccc tcaaacattt ccagatgagg gctatgttga tagatgagca atcgcaaacg
      361 gtgaaagtaa taggcagcgg tggttttgtt tacattcacc aactcagccg ctgttcgagc
      421 agtgacacct gctacaaaca gttcaatgag tttatgttg
//
LOCUS       DANLZD010000297          448 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.298, whole genome shotgun sequence.
ACCESSION   DANLZD010000297 DANLZD010000000
VERSION     DANLZD010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 448)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 448)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..448
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.298"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            36..>448
                     /locus_tag="PXE26_002651"
     CDS             36..>448
                     /locus_tag="PXE26_002651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
                     /protein_id="HDL5595173.1"
                     /translation="MHSILKKILGKSKSSSQSSVKSDNVFAIEQDSEGWLYPKNASQL
                     LNTELRQKYLGLLWQQVSMNRQMFEALYQQPIERYAEMVQLLPASESHHHSHIGGMLD
                     HGLEVIAFSAKVRQNYILPPNVAPEEQSKQRDAWTA"
BASE COUNT          136 a          103 c           84 g          125 t
ORIGIN      
        1 ttcaacgcaa acatcatctt tttcggtcta tttcaatgca ctcaattctc aaaaaaattc
       61 ttggcaaaag taaatcctcg tctcaaagtt cggttaaatc tgacaatgtt ttcgctattg
      121 agcaggatag tgagggctgg ttatatccga aaaatgcctc ccaactactt aatacggaat
      181 tacgccaaaa atatctgggt ctactttggc aacaggtatc aatgaaccgt caaatgtttg
      241 aggcacttta tcaacagcca atagagcgtt atgccgaaat ggtgcaactg ttacccgctt
      301 ccgagtcaca tcatcattca catatcggcg gaatgctcga tcacggtttg gaagttattg
      361 ctttttcagc caaagtccgt caaaactata tattgccacc gaatgtcgca cctgaagaac
      421 aatctaagca acgagacgct tggactgc
//
LOCUS       DANLZD010000298          440 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.299, whole genome shotgun sequence.
ACCESSION   DANLZD010000298 DANLZD010000000
VERSION     DANLZD010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 440)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 440)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.299"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            196..>440
                     /locus_tag="PXE26_002652"
     CDS             196..>440
                     /locus_tag="PXE26_002652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5595174.1"
                     /translation="MASGTMKAETAMSLLPTLQKGAVATGASSEDMAKIAISSMQQFG
                     IKEEDIGRALDMAVAAGQAGNFELADMARWLPQQMAAG"
BASE COUNT          130 a           88 c          127 g           95 t
ORIGIN      
        1 gcaatggctc gtcagccagc caagaaccaa atggagtttg accgacagtt agcgatggca
       61 tcaaacactg ccttttccga ccgtgatgtt aaagggcgta ttgagggcaa gaaagagtta
      121 ttagcagcgg tgcaagaggc ggttaaggtt gggggtggaa caaaagaaga tgctctttta
      181 actcttgata cgctaattgc ctcaggaacg atgaaggctg aaactgcaat gagcctatta
      241 ccaaccttgc agaaaggtgc tgtagcaaca ggtgcaagct ccgaggatat ggcaaaaatt
      301 gcgatctcct caatgcaaca atttgggatt aaagaagagg atattgggcg ggcattggat
      361 atggcagttg cagccgggca agcaggtaac tttgagcttg cagatatggc tcgctggcta
      421 ccacaacaaa tggccgcagg
//
LOCUS       DANLZD010000299          440 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.300, whole genome shotgun sequence.
ACCESSION   DANLZD010000299 DANLZD010000000
VERSION     DANLZD010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 440)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 440)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.300"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            21..260
                     /locus_tag="PXE26_002653"
                     /pseudo
     CDS             21..260
                     /locus_tag="PXE26_002653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651213.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
BASE COUNT          154 a           62 c           96 g          128 t
ORIGIN      
        1 ttttaattaa ggagccttat atgaaattca aaaaattagc attagcagca atgttaggtg
       61 gcttatttgt aacagctaat gcggcagaat tacctaatat cactatttta gcgacaggcg
      121 gaacgattgc tggtagtcag cagaatgcaa atagtagtgc ttatcaagca gggcaattga
      181 atatcgaaac cttaattgaa gcagtgccag aaatgaaaac attggcgaat atcaaaggtg
      241 agcagattgt gaaaattggc ccactaaagc cttgttagat gtaggctatc aaggtattgt
      301 cgtagcaggt gttggtaacg gcaatatgag tgcggaaaat cttgcattat ttagaggaag
      361 ccaacaatat ttttaagatt tttaataaac gttaaagcat ataaaaaatg gcataagtga
      421 gtcacttatg ccattatttt
//
LOCUS       DANLZD010000300          437 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.301, whole genome shotgun sequence.
ACCESSION   DANLZD010000300 DANLZD010000000
VERSION     DANLZD010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 437)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 437)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..437
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.301"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            2..>437
                     /locus_tag="PXE26_002654"
     CDS             2..>437
                     /locus_tag="PXE26_002654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL5595175.1"
                     /translation="MSKNRLEQILLFLKNHNIATVEQLVKVTEASPATIRRDLIKLDE
                     EGVVIRTHGGVSLNQFIPFQPTTNEKQFKQIVEKERIAEYAVSLISPGNSILLDAGTT
                     TLCIAKKIAHMPLRVITTDLHIALLLSEYKQIELIITGGRVDN"
BASE COUNT          154 a           85 c           77 g          121 t
ORIGIN      
        1 tatgtctaaa aaccgtctag aacaaatttt actattccta aaaaaccaca atattgctac
       61 cgtagagcaa ctggtaaaag tgactgaggc ttctcctgca actatccgcc gtgatttaat
      121 aaaattagat gaagaaggcg tcgtgattcg cacacacgga ggggtcagct taaaccaatt
      181 tataccgttt caaccaacaa caaatgagaa gcaatttaag caaattgtcg aaaaagaacg
      241 catagctgaa tatgccgttt cgcttatttc accgggaaat tctattttat tagatgctgg
      301 cactacaacg ctatgcattg cgaaaaaaat cgctcatatg ccacttcgag tgattacaac
      361 tgatctacat attgctttat tactctctga atataagcaa atagaattaa ttattacagg
      421 gggacgagta gataata
//
LOCUS       DANLZD010000301          430 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.302, whole genome shotgun sequence.
ACCESSION   DANLZD010000301 DANLZD010000000
VERSION     DANLZD010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 430)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 430)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.302"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(3..>430)
                     /locus_tag="PXE26_002655"
     CDS             complement(3..>430)
                     /locus_tag="PXE26_002655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF945 family protein"
                     /protein_id="HDL5595176.1"
                     /translation="INNFSLENSKGKVDLALLLNMAQFDPQNLGNMQAVLQALSTSKF
                     TSNINRQYAEDIIRQVSIVTEKLGEEEAKAFAKQQVDAVFLNAGVEQYGLRKVDDNNV
                     KIELTIDNGKVNLNGRELTEDELQMALFMIVMGAGSLGQ"
BASE COUNT          115 a           90 c           70 g          155 t
ORIGIN      
        1 gattattgcc cgagtgagcc tgctcccatc acaatcataa acagagccat ttgaagttca
       61 tcttcggtca gttcacgtcc gtttaaattc acttttccgt tatctatagt taattcaatc
      121 ttcacattgt tgtcatctac ttttcttaat ccgtactgtt caactcccgc attgagaaaa
      181 acagcatcaa cttgttgctt ggcaaatgct ttcgcctctt cttcgcctaa tttttctgta
      241 actattgaga cttggcgaat aatatcttcc gcatattgac ggttgatatt tgaagtgaat
      301 ttacttgttg aaagggcttg caataccgct tgcatattac caagattttg tgggtcaaat
      361 tgagccatat tcagtaataa agccaaatca actttgcctt tgctgttttc aagtgagaaa
      421 ttattaatat
//
LOCUS       DANLZD010000302          428 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.303, whole genome shotgun sequence.
ACCESSION   DANLZD010000302 DANLZD010000000
VERSION     DANLZD010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.303"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>428
                     /locus_tag="PXE26_002656"
     CDS             <1..>428
                     /locus_tag="PXE26_002656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011150324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HDL5595177.1"
                     /translation="FVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQA
                     LERKKEDEIACGEIETVHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYT
                     MKTAISAADMLNDKVLPYFESQGLPMLRILTDRGSEYCGKV"
BASE COUNT          133 a           74 c          100 g          121 t
ORIGIN      
        1 tttgtttcag caggaggtgt acgttcgatt tggttacgtc atcatcttgc caattttaag
       61 caaagattaa tcgccctgga aaaactggtt gcagaacaag gtattatact cagtgaaaca
      121 caggtacaag ccttagagcg taagaaagaa gatgagattg cctgtggtga aattgaaacg
      181 gtacaccctg gctatcttgg ctcacaagat actttctatg tgggcaacct caaaggagtg
      241 ggtcgtattt atcaacaaac gtttattgat acttacagta aagtggcgtt tgcaaaactt
      301 tatacaatga agaccgctat cagtgctgcg gatatgctga atgataaagt gttaccatac
      361 tttgaaagcc aaggtttacc gatgttacgc atattaactg accgaggaag tgaatattgt
      421 ggcaaggt
//
LOCUS       DANLZD010000303          425 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.304, whole genome shotgun sequence.
ACCESSION   DANLZD010000303 DANLZD010000000
VERSION     DANLZD010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 425)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.304"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..409)
                     /locus_tag="PXE26_002657"
     CDS             complement(<1..409)
                     /locus_tag="PXE26_002657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HDL5595178.1"
                     /translation="MALAADLGYQTQVETLIKSLCYHHSHLKIYLFQKTFPNEWFDIW
                     CQKLALLSSEIIPVKVCVDFSKYKSLEHINETGFYRYLIPYLDEERVLYLDSDIVVDD
                     NLSEMYWLNFNGIPLYAVEDYVHNHIPAYLDLDL"
BASE COUNT          160 a           68 c           63 g          134 t
ORIGIN      
        1 tgaggtctaa atcaagataa gccggtatat gattatgaac ataatcctct actgcatata
       61 aaggtatacc attaaaatta agccagtaca tttctgataa attatcatca accacaatat
      121 ctgaatctaa atatagtaca cgttcttcgt ccagatatgg aataaggtaa cgataaaaac
      181 ccgtttcatt aatatgctct aaactcttat attttgaaaa atctacacag actttcacag
      241 gaataatttc actcgataat aaggctaatt tttggcacca gatatcaaac cattcattag
      301 gaaaagtttt ctgaaataga taaatcttaa gatgagaatg atgataacaa agcgatttaa
      361 ttaaggtttc aacttgagtt tgatagccta aatcagctgc taatgcaata actattggtt
      421 ggttg
//
LOCUS       DANLZD010000304          423 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.305, whole genome shotgun sequence.
ACCESSION   DANLZD010000304 DANLZD010000000
VERSION     DANLZD010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 423)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.305"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..>423)
                     /locus_tag="PXE26_002658"
     CDS             complement(<1..>423)
                     /locus_tag="PXE26_002658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595179.1"
                     /translation="NGALIKEPRNPLIYHRHSWHLEFDGSVLYIADPTLFKYESINLA
                     WYVGDKDTDLYPYLAEFVTSVATHLNVETDHIVTYGSSGGGFAALQLGARIGNGVVTV
                     CINPQTNIMKYVPSYRNAFLNACFDFNAEEYDSLSNQEK"
BASE COUNT          143 a           80 c           65 g          135 t
ORIGIN      
        1 tttctcttga ttagaaagac tatcgtactc ttccgcatta aagtcaaagc aagcgtttaa
       61 aaaggcatta cgataacttg gtacatattt catgatgttg gtttgtggat taatacaaac
      121 ggtaactaca ccgtttccaa ttcttgctcc caactgtaat gcagcaaatc caccaccact
      181 tgaaccataa gtaacaatat ggtctgtctc aacattcaaa tgtgtagcaa cagaagttac
      241 aaattcagct aagtatggat ataaatcagt atctttatct ccaacatacc aagccaaatt
      301 aattgattca tatttaaata atgttggatc tgcgatatat agaactgagc catcaaattc
      361 tagatgccaa ctatgtctat gataaattaa gggatttctg ggttctttga ttaatgcacc
      421 att
//
LOCUS       DANLZD010000305          397 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.306, whole genome shotgun sequence.
ACCESSION   DANLZD010000305 DANLZD010000000
VERSION     DANLZD010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.306"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            234..>397
                     /locus_tag="PXE26_002659"
     CDS             234..>397
                     /locus_tag="PXE26_002659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5595180.1"
                     /translation="MKVHEKIKLLRENNHWTQDEMAQKLSMTTKGYAKIERGETISNL
                     PKIEQIAEVF"
BASE COUNT          156 a           69 c           55 g          117 t
ORIGIN      
        1 ttgatagtct ttatatgctg cataaagagg caaaattact gatgcagctg acgctaaaat
       61 acctagcatt ccatataatg gattatattg attattcatg aatgtttctt ctcctgtgag
      121 cttaagataa aatttactct attctaaatt gctcaataaa ctgctacaat ccacaaaatt
      181 tatcctttac cacatcaagt tatatcccaa ctcccacaat ctataggtgt tatatgaaag
      241 tacacgaaaa aatcaaatta ctgcgagaaa ataatcattg gacacaagat gaaatggctc
      301 aaaaattaag tatgacaacc aaaggttatg caaaaataga acgtggtgaa actatctcta
      361 atttaccgaa aatagaacaa atcgcagaag tatttaa
//
LOCUS       DANLZD010000306          394 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.307, whole genome shotgun sequence.
ACCESSION   DANLZD010000306 DANLZD010000000
VERSION     DANLZD010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 394)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 394)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.307"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(6..82)
                     /locus_tag="PXE26_002660"
     tRNA            complement(6..82)
                     /locus_tag="PXE26_002660"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(46..48),aa:Pro,seq:tgg)
     gene            complement(107..182)
                     /locus_tag="PXE26_002661"
     tRNA            complement(107..182)
                     /locus_tag="PXE26_002661"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(147..149),aa:His,seq:gtg)
     gene            complement(212..288)
                     /locus_tag="PXE26_002662"
     tRNA            complement(212..288)
                     /locus_tag="PXE26_002662"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(252..254),aa:Arg,seq:ccg)
BASE COUNT          110 a           99 c           84 g          101 t
ORIGIN      
        1 taaattggtc ggcgagatag gatttgaacc tacgacccac tggtcccaaa ccagttgcgc
       61 taccaagctg cgctactcgc cgtctgatac tcacaagagt attgaatggg gtggctaatg
      121 ggattcgaac ccacgacaac tggaatcaca atccagggct ctaccaactg agctatagcc
      181 accattgtgt tgatagtgcc gcattgacat ctggcgcgct cgacaagatt cgaacttgcg
      241 acctttggct ccggaggcca acgctctatc caactgagct acgaacgctt cgatttacat
      301 caattcaact taatgcgtcg caacggaggc gtatattata gatttcactt tcccttgtct
      361 agcacttttt aaaaaaaatg taaaaaaatg tatt
//
LOCUS       DANLZD010000307          386 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.308, whole genome shotgun sequence.
ACCESSION   DANLZD010000307 DANLZD010000000
VERSION     DANLZD010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.308"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            44..>386
                     /locus_tag="PXE26_002663"
     CDS             44..>386
                     /locus_tag="PXE26_002663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5595181.1"
                     /translation="MKNIETKWLEDFLTLEECRHFSQAAEKRNLSQSAFSRRILALEE
                     VVGVKLFDRTSIPLQLTEQGKLFHSQTRNLLQQLQNNLDELLGHNCNLPNIKFAAAHS
                     LSLSIMPKLIKK"
BASE COUNT          140 a           63 c           62 g          121 t
ORIGIN      
        1 gcatttaatg aaatcataat gcgaaatttg cattggttag gatatgaaaa acatagaaac
       61 aaaatggtta gaagatttct taacgctaga agaatgtcgc catttttctc aggcagcaga
      121 aaaaagaaat ttgtcacaat ctgcatttag cagacgtatt ttagctttag aagaagttgt
      181 gggagtgaag ttatttgatc gtacctctat tccattacaa ctcacagaac aaggtaagct
      241 atttcattca caaacgcgaa acttattaca acaattacag aataatctag atgaattatt
      301 aggacataat tgtaacttac ctaatattaa atttgcggcg gctcattccc tctctctttc
      361 tattatgccc aaattaatta agaaat
//
LOCUS       DANLZD010000308          375 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.309, whole genome shotgun sequence.
ACCESSION   DANLZD010000308 DANLZD010000000
VERSION     DANLZD010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.309"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            123..217
                     /locus_tag="PXE26_002664"
     tRNA            123..217
                     /locus_tag="PXE26_002664"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:158..160,aa:Ser,seq:gct)
     gene            231..307
                     /locus_tag="PXE26_002665"
     tRNA            231..307
                     /locus_tag="PXE26_002665"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:265..267,aa:Arg,seq:acg)
BASE COUNT          113 a           78 c           77 g          107 t
ORIGIN      
        1 acttaaaaaa acagcgtttt gtttattcaa taggcaaaca ctcgggattt ttcaattttc
       61 aggaaaaaga atttgacatc tttttaaatt ctagtaatat ggcgcccaca gacacagtga
      121 gtggtgagat ggccgagcag gctgaaggcg ctcccctgct aagggagtat agggttaaaa
      181 agctctatcg agggttcgaa tccctctctc accgccattt actttatcac gcacccgtag
      241 ctcagctgga tagagtactc ggctacgaac cgagcggtca gaggttcgaa tcctctcggg
      301 tgcgccattt taatttttac tctattcaaa ttaaaatggt tgctgataaa attaaataaa
      361 cttacaattc aaata
//
LOCUS       DANLZD010000309          358 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.310, whole genome shotgun sequence.
ACCESSION   DANLZD010000309 DANLZD010000000
VERSION     DANLZD010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 358)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 358)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.310"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
BASE COUNT          119 a           69 c           51 g          119 t
ORIGIN      
        1 actttggatt ttagttatat cctgaaaaat caaattataa agaaacctta tctatcaata
       61 cttgaagcca ttaagttcaa gtctcgacca ggcaccattt gactaaattt agttcaacag
      121 agctaaacga aaaaacctta gaaagcctgt aaaatcaacg tttacaggct tttttgttgt
      181 tttagctcaa tggcactaaa catttcatat cgcaaatttt aagtagccta gcaaattttc
      241 cgccaaatat gaccgcttgt aatgccgtta ggttattgcc tggcggcctt tttgttacag
      301 ctcttatatt ttttacacca aagttcagaa aaagtcactt ttatcactaa cattaaga
//
LOCUS       DANLZD010000310          341 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.311, whole genome shotgun sequence.
ACCESSION   DANLZD010000310 DANLZD010000000
VERSION     DANLZD010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 341)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 341)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.311"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
BASE COUNT          123 a           48 c           46 g          124 t
ORIGIN      
        1 ttattctatc tatgatgatg aaaccatttc ttctctaact ttatttaact gttttagata
       61 tagtaaaaac aaaattactc atcaaattca agtcgagtat ttttgttttg ataagaaaca
      121 atggataaag gaagttcata aatattcaaa aggtggattt aagagatgtg ttaatatccc
      181 tttctttaga tttagtaagt ttttccttaa taatgcacaa cgaacagcct tttcatatgt
      241 aactcattac attaagaagc attcctatgc ctatagtaag gcagacaata ttcaagaatt
      301 attagtaaag tttttctcta gaaagcaacc tgttatgcaa a
//
LOCUS       DANLZD010000311          338 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.312, whole genome shotgun sequence.
ACCESSION   DANLZD010000311 DANLZD010000000
VERSION     DANLZD010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.312"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>338
                     /locus_tag="PXE26_002666"
     CDS             <1..>338
                     /locus_tag="PXE26_002666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5595182.1"
                     /translation="AVDSLSIGARNLLIDSTYNQHINYNTKMSSITRTVYRGNMLIRL
                     GMLGGAGVAGIVQAPAAQVSNIRQGQEYTLSLNVQGTAGIQKTGLNYVFLMRADGANQ
                     RLATIPVIAS"
BASE COUNT          104 a           79 c           76 g           79 t
ORIGIN      
        1 ctgccgttga ttcactttct atcggtgcaa ggaacttact gatagacagt acttacaacc
       61 aacacatcaa ctacaataca aaaatgtcat caatcacacg cacagtctat cgcggcaata
      121 tgttgatacg actcggaatg cttggtggcg caggtgtggc cggtattgta caagcaccag
      181 ccgctcaagt aagtaatatc agacagggtc aagagtacac acttagcctg aatgtacagg
      241 gtacagccgg catacaaaaa acggggctca actatgtatt cttgatgcgt gctgatgggg
      301 ctaatcaacg gttagcaaca atacctgtta tagccagc
//
LOCUS       DANLZD010000312          335 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.313, whole genome shotgun sequence.
ACCESSION   DANLZD010000312 DANLZD010000000
VERSION     DANLZD010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.313"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(100..>335)
                     /locus_tag="PXE26_002667"
     CDS             complement(100..>335)
                     /locus_tag="PXE26_002667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5595183.1"
                     /translation="LRHSHVAYLIEQGFSPVVIAERLGHESISITLNYAHLYLGRDKT
                     EKKESVIGAIKKHKRKIDKTIEQSHSMSNDMEL"
BASE COUNT          100 a           62 c           38 g          135 t
ORIGIN      
        1 atattttacc tgttttttct atatttttgg ctaaaaacat gatgctaatt gcttcaaaaa
       61 aatggagagt atcaaattta taatactctc catgtatctc tatagctcca tatcgttact
      121 catactatga ctctgctcaa ttgttttatc tattttcctt ttatgtttct taattgctcc
      181 aataactgat tcctttttct ctgttttatc cctaccaaga tataaatgtg catagtttaa
      241 ggttattgag atactttcat gacctaatct ttctgcaatt accacaggag aaaatccttg
      301 ctctatcaaa taagcaacat gagaatgtct taaat
//
LOCUS       DANLZD010000313          330 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.314, whole genome shotgun sequence.
ACCESSION   DANLZD010000313 DANLZD010000000
VERSION     DANLZD010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.314"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            complement(<1..>330)
                     /locus_tag="PXE26_002668"
     CDS             complement(<1..>330)
                     /locus_tag="PXE26_002668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL5595184.1"
                     /translation="EYIARMDADDISLPTRLSEQILYLEENHLDLCGCNALLFSEHGN
                     LGLTNKLNSHEALEKLMVAGDIGIIHPTFLARRKVFVESGGYNPLALHAEDMEFIAHI
                     LSMGFRLG"
BASE COUNT          116 a           71 c           42 g          101 t
ORIGIN      
        1 ccctaatcta aatcccattg ataaaatatg ggcaataaat tccatatctt ccgcatgtaa
       61 agctaaggga ttataccctc cagattcaac aaatactttt ctccttgcta aaaaagtagg
      121 gtgaattatt ccaatatcac cagccaccat aagcttttct aaagcctcat gactattcaa
      181 cttatttgta agaccaaggt tgccatgttc agaaaaaagc aaagcattac aaccgcataa
      241 gtctaaatgg ttttcttcta aatataaaat ttgctctgac aatctagtag gtaaagatat
      301 atcatcagca tccattctcg ctatatattc
//
LOCUS       DANLZD010000314          326 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.315, whole genome shotgun sequence.
ACCESSION   DANLZD010000314 DANLZD010000000
VERSION     DANLZD010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.315"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            63..263
                     /locus_tag="PXE26_002669"
     CDS             63..263
                     /locus_tag="PXE26_002669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595185.1"
                     /translation="MLPDLQNFELNKRTAQCPVWTFNIEYLRFHYELREHCDLIEPHK
                     EILKLLFGIIWAFIALRYVLSA"
BASE COUNT          105 a           47 c           57 g          117 t
ORIGIN      
        1 atattaattt gcctgatctg gaagttccta cggcggaatc aattatatcc ccttttaaaa
       61 aattgctacc agatttacag aattttgaac tgaataaacg aaccgcacaa tgccctgttt
      121 ggacatttaa tattgaatac ttgagatttc attatgaact tagagaacat tgcgatttga
      181 tagaaccaca taaagaaatc ttaaagctat tattcggcat tatttgggcg tttattgctt
      241 tacgttatgt attaagtgct taggaggata aatgtttaaa gtgattttta tggcactatc
      301 agcaattgtg aattatttga tttcag
//
LOCUS       DANLZD010000315          326 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.316, whole genome shotgun sequence.
ACCESSION   DANLZD010000315 DANLZD010000000
VERSION     DANLZD010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.316"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>326
                     /locus_tag="PXE26_002670"
     CDS             <1..>326
                     /locus_tag="PXE26_002670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595186.1"
                     /translation="GQAGSGKSHLLGDFVQKRQNSGKYSLLLLGQDFTEKSNAWNQIL
                     SKQLNLNITPEVFLSALDSIGEMQKERVILAIDALNEGEGKSLWNNQLNGLIELVSQY
                     PNIGLV"
BASE COUNT          114 a           45 c           66 g          101 t
ORIGIN      
        1 ctggtcaagc tggtagtgga aaatctcatt tattgggtga ttttgtccaa aaaagacaaa
       61 attctggaaa gtattctttg ttgttattgg ggcaggattt tacagaaaaa tccaatgctt
      121 ggaatcaaat cttatccaaa caattaaatc ttaatatcac acccgaagta tttttatccg
      181 cattagatag tatcggagaa atgcaaaaag aacgggttat tttagccata gacgccttaa
      241 atgagggtga agggaaatca ttatggaata accaacttaa tggattaatt gagttggtaa
      301 gtcaatatcc aaatattgga ctggtt
//
LOCUS       DANLZD010000316          320 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.317, whole genome shotgun sequence.
ACCESSION   DANLZD010000316 DANLZD010000000
VERSION     DANLZD010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..320
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.317"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>320
                     /locus_tag="PXE26_002671"
     CDS             <1..>320
                     /locus_tag="PXE26_002671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HDL5595187.1"
                     /translation="PYNSRQYCDAYHLLENVARWEKPKVYGVARKMDRTSLKSDYCMI
                     AATKAFEELIENADAKYILLSYNNMSDKGNDRSNAKISDEDIMKILSKKGKVIVFESD
                     YKSF"
BASE COUNT          123 a           34 c           64 g           99 t
ORIGIN      
        1 tccatataat tcaagacaat attgtgatgc atatcattta cttgaaaatg tggcacgatg
       61 ggaaaaacct aaagtttatg gtgttgcaag aaagatggat agaacttcgc ttaaaagtga
      121 ttattgtatg attgcagcta caaaagcatt tgaggagctt attgaaaatg ctgatgcaaa
      181 atatattttg ctttcatata acaatatgtc agacaaggga aatgatagat ccaatgcgaa
      241 aatatcggat gaagatatta tgaaaattct tagcaaaaag ggaaaagtaa ttgtatttga
      301 atcggattat aagagttttt
//
LOCUS       DANLZD010000317          315 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.318, whole genome shotgun sequence.
ACCESSION   DANLZD010000317 DANLZD010000000
VERSION     DANLZD010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 315)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 315)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.318"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
BASE COUNT          118 a           53 c           42 g          102 t
ORIGIN      
        1 aaaaactcct atctaaacac attccacatt tgaaaatcat agaggctctc ttcattaaac
       61 gcatttctaa agttttcatt agtacaataa tgaaaaaatg ccgaagtagg ttgctcaata
      121 catccataaa gactatggga cttgagatga gtgataaact cgttatgttt atagaattct
      181 ctatataaac tcaaaagctc atcatctttt tggctcaaat tgccattttg gaaataaaaa
      241 ccaaattgac tgagttttat acatagatta tttgtgatgt ttaatacatc aaaaaatcca
      301 gccttataaa tcagg
//
LOCUS       DANLZD010000318          310 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.319, whole genome shotgun sequence.
ACCESSION   DANLZD010000318 DANLZD010000000
VERSION     DANLZD010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 310)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 310)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..310
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.319"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
BASE COUNT          100 a           52 c           64 g           94 t
ORIGIN      
        1 acaaaacatt aataaaacgg tatttctatg cacacttttc aatactgttg aaaaagagta
       61 atgggcttgc cattacggga gaggtgcaac actcaggcaa cttgatttta ggcaactagg
      121 gccgtttgag aattaagtga tgggagtgat tgccgaggtg tgaattcact agactggaat
      181 taacatcggc tgaataggtt gaatcctatc agctgtcatt taataggtta tttcaccata
      241 ttaaatggag tgctctgatt aattggttca acaataaaac cgtataatct actcaaattt
      301 cctttccgaa
//
LOCUS       DANLZD010000319          298 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.320, whole genome shotgun sequence.
ACCESSION   DANLZD010000319 DANLZD010000000
VERSION     DANLZD010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.320"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>298
                     /locus_tag="PXE26_002672"
     CDS             <1..>298
                     /locus_tag="PXE26_002672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5595188.1"
                     /translation="AGQERCIADEVPFEIPQNWIWVRLENYSLNHDRRRKPVSVAQRS
                     QQNKLYDYYGATGAIDKVASYIFDGKFILIGEDGGNFFTKKDVAFIVEGKFWANN"
BASE COUNT          101 a           35 c           71 g           91 t
ORIGIN      
        1 gcaggtcagg aacggtgtat cgccgatgaa gtgccatttg agattcctca aaattggatt
       61 tgggtgaggt tggaaaatta ttctttaaat catgatagaa gaagaaaacc agtatcagtt
      121 gcacagcgta gccaacaaaa taaattgtat gactattatg gagcgactgg agcaatagat
      181 aaagtggcaa gctatatttt tgatggtaag tttattttaa ttggagaaga tggaggtaat
      241 ttcttcacta aaaaagacgt tgcttttatt gttgaaggta aattttgggc aaataatc
//
LOCUS       DANLZD010000320          298 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.321, whole genome shotgun sequence.
ACCESSION   DANLZD010000320 DANLZD010000000
VERSION     DANLZD010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.321"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
BASE COUNT          102 a           53 c           46 g           97 t
ORIGIN      
        1 gctaaaaatg ccattatcaa cagcaacctc tgccgtcgct tgcgtgtcac atcaggtaat
       61 ccgactgaca caggcagcaa caatgtagaa ttttcaaata atcaagcaaa atctattgca
      121 atatcgaaat atggttcttt cgataatcct tcattgttta ttgataatat caattttatt
      181 aataacattt tggagcccag tgaatttaat caagatgtgt atattgacgg gacaatttta
      241 aaacagtgcc aatttattaa taatcgttgt attagcaagt ctaagcaata ttctgtca
//
LOCUS       DANLZD010000321          290 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.322, whole genome shotgun sequence.
ACCESSION   DANLZD010000321 DANLZD010000000
VERSION     DANLZD010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.322"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..284
                     /locus_tag="PXE26_002673"
     CDS             <1..284
                     /locus_tag="PXE26_002673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595189.1"
                     /translation="SRKTSRKIIPEQVNFDINLPIYIPLFLSDKTAKIQAVWELEQEN
                     GERDAGAVKRNRIQFRYLPEGVHKLTLIVGTPLLSKGSKVYQCLIKVNK"
BASE COUNT          105 a           41 c           56 g           88 t
ORIGIN      
        1 tatcgagaaa aacatcgcgt aaaattattc ctgagcaagt taattttgac attaacttgc
       61 ctatctatat cccgctgttt ttatcagata agacagcgaa aattcaagca gtatgggagt
      121 tagaacaaga aaatggtgag cgtgatgctg gcgctgtaaa gcgaaatcgt attcagttta
      181 gatacttgcc agaaggggta cataaattaa cattaattgt tggtacgcct ttattatcaa
      241 aaggaagtaa ggtttatcaa tgcctaatta aagttaataa ataatattaa
//
LOCUS       DANLZD010000322          288 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.323, whole genome shotgun sequence.
ACCESSION   DANLZD010000322 DANLZD010000000
VERSION     DANLZD010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 288)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 288)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..288
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.323"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>288
                     /locus_tag="PXE26_002674"
     CDS             <1..>288
                     /locus_tag="PXE26_002674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5595190.1"
                     /translation="DSIINKAKNQNSQENNLTEINSNIQILAEKHQLTIESLQWNLEQ
                     GKSIELSIIGNSRSLFDFIHSVKQIPYLKYNAISLIKSRQDRKVEMNTTLVI"
BASE COUNT          123 a           48 c           40 g           77 t
ORIGIN      
        1 gactcaatta tcaataaagc taaaaatcag aacagccaag agaataattt aaccgaaata
       61 aacagcaaca tacaaatatt agctgaaaaa caccaactaa ccattgaaag tttacaatgg
      121 aatttagaac aaggtaaaag tattgaattg agtattatcg gcaatagccg atctttattt
      181 gattttatcc attcagttaa gcaaatacct tatttgaaat acaatgcgat tagcctcatc
      241 aaatctcggc aagacagaaa agttgaaatg aatactacct tagtcata
//
LOCUS       DANLZD010000323          285 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.324, whole genome shotgun sequence.
ACCESSION   DANLZD010000323 DANLZD010000000
VERSION     DANLZD010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..285
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.324"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..>285
                     /locus_tag="PXE26_002675"
     CDS             <1..>285
                     /locus_tag="PXE26_002675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase family
                     protein"
                     /protein_id="HDL5595191.1"
                     /translation="LFGTKKEKKTFKFSKIESVLLKPIGDAIGDAVVHIAHLEQIKKA
                     LPNVKIAVLVTSRNKLIFSQANVVDMILEDKVSTYLSQRGHWDLYLDFKPT"
BASE COUNT          100 a           50 c           50 g           85 t
ORIGIN      
        1 actttttggt acaaaaaaag agaaaaaaac cttcaaattt agcaaaatag aatccgtatt
       61 actcaaacct atcggagatg ctattggcga tgctgttgtg catatagctc atttggagca
      121 aattaaaaaa gctctcccaa atgtaaaaat agcggtttta gttacatctc gtaacaaatt
      181 gattttctct caagcaaacg tggtagatat gatcttagaa gataaagtat ccacttatct
      241 ctcgcagcgg ggacattggg atctttattt agatttcaaa ccgac
//
LOCUS       DANLZD010000324          284 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.denovo.325, whole genome shotgun sequence.
ACCESSION   DANLZD010000324 DANLZD010000000
VERSION     DANLZD010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 284)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 284)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.denovo.325"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
BASE COUNT           82 a           44 c           47 g          111 t
ORIGIN      
        1 gttttgtgat tgtgatcata atacacatta aagaggtttc aggacgatat aaaaaaggct
       61 ctctaaatag attagaaagc cttgatattg tatgcggtta tcccatcgtg gttgaaaaac
      121 ttagagtaag gttctttatt atcttcaaca agacgataag cctctgatac atacctttta
      181 catctttttc tttgcttatt aagttgtcta tctgccagat ttttagctgt tcctattttc
      241 tttaattcat cggaagtcag tgattttaat agtatgctta attc
//
LOCUS       DANLZD010000325         5122 bp    DNA     linear   BCT 23-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25749910-rid16723373.guided.155, whole genome shotgun sequence.
ACCESSION   DANLZD010000325 DANLZD010000000
VERSION     DANLZD010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25749910
            Sequence Read Archive: SRR17934056
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5122)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5122)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574540.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574540.1
            Genome Coverage       :: 119x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 22:24:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,680
            CDSs (total)                      :: 2,623
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 20 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5122
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25749910-rid16723373.guided.155"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: KY"
                     /collection_date="2020-11-24"
                     /collected_by="Murray State University Breathitt
                     Veterinary Center, Hopkinsville, KY"
     gene            <1..650
                     /locus_tag="PXE26_002676"
     CDS             <1..650
                     /locus_tag="PXE26_002676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL5595192.1"
                     /translation="KAAKEKAEAERLAAEKEVDPIAIIKAKGIDDTNYGLKLGNSKET
                     IEGKVTVRTQSYLYNQPYSVVTAQAVQRNGWENGNYIDKVDGTVTVKGLKTEKLPTEG
                     TATYSGKAFNHDGAKGFNGGDLTYNVNFSKRTGSGRVEGEFGNLIVLEEGTINNTQIS
                     STVHGNNPLNLSGKYTVEFFGKNAEEIAGEIQTKANLTGEVSNFGLAGTRGDIQK"
     gene            846..2255
                     /locus_tag="PXE26_002677"
     CDS             846..2255
                     /locus_tag="PXE26_002677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5595193.1"
                     /translation="MKKYPLLFSLFSPVVWAEKVIEHNTDPISFERQPQAVKFEQNVV
                     KNSQKPTAYQPAYSVNQNVEQQINQAILSQDWATLEPLLSRYPQTENFDPLLWHYAQA
                     ALAYAKKDHQTAVFHYRQLLAKPPSLVYPRFDLALILAEDQQFRAAEQEFKAIQAHLP
                     PELAKIARNTQVQIAENEAWQPDFYLQYTQTDNVNNASSSPIVNVNGRIFRKNADSLP
                     QSAKGVRYGLGLSKLHNVKGNHFVGLTLNYSGIYYWDNRDYREQSVSVSPNYSYRTVA
                     YWLTFSPFIEQNWLGSSRYNVQFGATLNGLRYLNSQWLVSGSFTHLQKRYFEELTASR
                     YNSYQHQLSGGVQWQAVKNGRFFANLDGVREIAREKAQSSNKWLARVGAVFQGERWAT
                     QASIGFGKRYFADKHYLFGYKRLDTEYQANLAVWNRTWHWQGIVPKLNFRYQKIDSNI
                     ADFYSRQNKEVFFTLEKLF"
     gene            2401..2874
                     /gene="gpt"
                     /locus_tag="PXE26_002678"
     CDS             2401..2874
                     /gene="gpt"
                     /locus_tag="PXE26_002678"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDL5595194.1"
                     /translation="MSEKYTNEKYVVTWDMFHMHARKLAENLLPATQWKGIIAVSRGG
                     LFPAAVLARELGIRHVETVCIASYDHDSQGELNVLHAADTDGEGFIVVDDLVDTGNTA
                     KEIRRMYPKARFVTVFAKPHGAPLVDDYVIDIPQETWIEQPWDLGITFVQPLARR"
     gene            2987..3610
                     /gene="gmk"
                     /locus_tag="PXE26_002679"
     CDS             2987..3610
                     /gene="gmk"
                     /locus_tag="PXE26_002679"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDL5595195.1"
                     /translation="MSLGNLYIISAPSGAGKSSLINALLADLPRSEVQLSISHTTRQP
                     RPAEQDGVHYYFTSHDEFKQLIEQGYFLEWAEVFGNYYGTSLPMIERSLEQGIDVFLD
                     IDWQGARQIREKVPNVKTVFILPPSKTELEKRLIGRGQDSAETIAKRMAEAVSEMNHY
                     NEFDYVIINDDFQQALAELKAILIAERLSLGSQQIRHQHLITDLLNN"
     gene            3700..5097
                     /locus_tag="PXE26_002680"
     CDS             3700..5097
                     /locus_tag="PXE26_002680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDL5595196.1"
                     /translation="MKLSKLAFSVALALTVTACTTGNMSNDGTLQQAQQTYQSYDEIT
                     KQYQINEQWWQGYTDAELNRVVDLAIKNNLDLAKSGIAVNKALYNANLVGANLVPTFS
                     GSGSVSAAKGLGSASSNNVSTGVSTTAAQAAFNLSYTVDLWRRLADTASAAEWTHKAT
                     IEDLKATRLSIINAVVTTYYQLAYYRDAIRITEESIRHYEQISRILTNKMNAGAIDSL
                     AVDQAQQAVLNARNSVIDLKTNQKIAEQTLRNLLNVQPNTPLNIRYPNIMSVKLQGVD
                     LNVPVSAIANRPDVVGSLQRLQSAFKTLTATEKSWFPTLTIGGSITGSATNIGNVADN
                     PVGNGLIKLDLPFLDWNRVKNNVKISETDYVTARLNYEQKITSALNEIDRYYYSYTQS
                     RSSLKILQDTNAKNKRISSYYKNRYEQGVSEFREWITALNTELNSQLAILNAKYAILT
                     NENAVYQAMAGKYRR"
BASE COUNT         1569 a          972 c         1144 g         1437 t
ORIGIN      
        1 aaaaagcggc gaaagagaaa gcggaagcgg agcgtttagc agcagaaaaa gaagtagatc
       61 ctatagctat tattaaagca aaaggtattg atgatacaaa ttacggctta aaacttggta
      121 atagtaaaga aactattgag ggtaaagtca cagtcagaac acagagttat ttatataatc
      181 agccatattc tgtagtaaca gcacaagcag ttcaaagaaa tggctgggaa aacggtaatt
      241 atattgataa agttgatgga acagttacag ttaaaggatt gaaaacagag aaattaccaa
      301 cagagggtac tgcaacatat tcaggaaaag catttaacca cgatggagct aaaggtttta
      361 atggtggtga tctaacctat aatgttaatt tctctaagcg taccggttca ggtagagttg
      421 agggagaatt tggaaactta atcgtattag aagaggggac gattaataat actcagattt
      481 cttcaacagt acatggcaat aatcctttaa acctttctgg aaaatataca gtcgaatttt
      541 tcggtaaaaa tgcagaggaa attgccggtg aaattcagac aaaagcaaat cttactgggg
      601 aagtgagtaa ttttggactt gccggcactc gtggcgatat ccaaaaataa ccttttctaa
      661 cgttcaatgc cgtttaacga aaaattaaac ggcatttgtc ttgatattgc ttgtagatac
      721 cataagacac aatagtttag atttcaattt acagcttcta ataaccctct cccacaaggg
      781 gagagagtga taaatcccgt agaggcgaac atataggtcc gcccctacca attttcttta
      841 tctttatgaa aaaatatccc cttttatttt cgctgttcag ccccgttgta tgggcagaaa
      901 aggtgattga acacaacact gacccgattt cctttgagcg tcagccgcaa gcggttaaat
      961 ttgagcaaaa tgttgtaaaa aattcacaaa aaccgaccgc ttatcagcct gcgtattcag
     1021 tcaatcagaa tgttgaacag caaattaacc aagcgattct cagccaagat tgggcaacgc
     1081 ttgaaccgct tttaagccgt tatccgcaaa ctgaaaattt tgacccgttg ttgtggcact
     1141 atgcgcaagc cgcacttgcc tatgcgaaaa aagatcatca aaccgcagtt tttcactatc
     1201 gccaactgtt agctaagccc ccgagtttgg tttaccctcg ttttgatttg gcgttgattt
     1261 tggcagaaga tcagcaattt cgtgcggcag agcaggaatt taaggctatt caagcccatt
     1321 taccgccgga acttgctaaa attgcccgca atactcaagt ccaaattgct gaaaatgagg
     1381 cgtggcagcc cgatttttat ctgcaatata cccaaacaga taacgtgaat aatgcctcat
     1441 cttcgccgat tgtgaatgta aatgggcgga ttttccgcaa aaatgcagac agtttgccac
     1501 aatcagcaaa aggcgtgcgt tatggcttag ggttgagtaa attgcacaac gtgaaaggca
     1561 atcattttgt cggtttaacg ctcaattata gcgggattta ctattgggat aaccgagatt
     1621 accgtgagca atccgtatcc gtttcgccga attatagcta ccgcaccgtc gcttattggc
     1681 tgactttttc gccttttatt gagcaaaatt ggctggggag tagccgttat aatgttcaat
     1741 ttggggcaac actcaacggt ttgcgttacc ttaattcgca atggttggtg tcggggagtt
     1801 ttacccattt gcaaaaacgg tattttgagg agctaaccgc aagccgttat aacagctatc
     1861 agcaccaact cagtggcggt gtgcagtggc aagcggtcaa aaatgggcgg ttttttgcaa
     1921 atttagacgg cgtgcgtgaa attgcacggg aaaaagcaca aagctcgaat aagtggctgg
     1981 ctcgagtggg ggcggttttt caaggcgaac gctgggcaac gcaggcaagt atcggctttg
     2041 gcaagcgata ttttgccgac aagcactatt tgtttggcta taagcggtta gacacggaat
     2101 atcaagccaa tttagcggtt tggaaccgca cttggcattg gcagggcatt gtgccgaagc
     2161 tgaatttccg ttatcaaaaa attgacagca atattgctga tttttactct cgccaaaaca
     2221 aggaagtctt tttcacttta gaaaagctat tttagtgttg gttttttgtg ctaagcatac
     2281 gattgcgtag ctgccggcac aaaaaaataa atgaaatgat ggcgaaaaaa gcattttcgg
     2341 gttatcctag tgcaattttt tatatcgggg tagcccccaa ttttatatta ggttgtttct
     2401 atgagtgaaa aatacacaaa tgaaaaatat gtcgtgacgt gggatatgtt ccatatgcac
     2461 gctcgcaagt tggcagaaaa tttattacct gccacacagt ggaaagggat tattgcggtg
     2521 agccgtggcg gcttgtttcc ggcagccgtt ttagcacgtg agttgggtat tcgccacgta
     2581 gaaacagtgt gcattgccag ctacgatcac gatagccaag gtgagttaaa tgtgttacac
     2641 gcagccgata ccgatggcga aggctttatt gtggtagatg atttagtgga taccggcaac
     2701 acggcaaaag aaattcgcag aatgtacccg aaagctcgtt ttgtaaccgt gtttgcgaaa
     2761 ccgcacggtg caccgttggt tgatgattat gtgattgata ttccacaaga aacgtggatt
     2821 gagcagcctt gggatttagg cattaccttc gttcagcctt tggcacgtag ataattttgt
     2881 gtaatggaca atgaaagttg tccattattt tttatttatt cctatgaaat gtaggggcga
     2941 atcatcattc gccctattcc caaaatcaaa taggtatata caaataatga gtttaggcaa
     3001 tctttatatt atttctgccc caagtggagc aggaaaatct tccttaatta acgccttgtt
     3061 ggcggattta ccccgttcgg aagtacagct ttcgatttca cacactaccc gtcagcctcg
     3121 tccggcagaa caggacggcg tgcattatta tttcacttcg cacgatgagt ttaagcagct
     3181 gattgagcaa gggtattttt tagaatgggc ggaggtgttt ggcaattatt acggcacatc
     3241 attgccgatg attgaacgta gcctagagca gggcattgat gtctttttgg atattgactg
     3301 gcaaggggct agacaaattc gggaaaaagt gccgaatgtg aaaaccgttt ttattttgcc
     3361 accgtcaaaa acagaattgg aaaaacgttt aatcgggcgt gggcaagatt ccgctgaaac
     3421 cattgccaaa cgtatggcag aggcggtgtc ggaaatgaac cattacaatg agttcgatta
     3481 tgtgattatt aatgatgatt tccaacaggc attggcagag ctaaaagcga ttttaattgc
     3541 cgagcgtttg agcttaggtt cgcaacaaat tcgtcatcag catttgatta ctgatttgtt
     3601 aaataattaa atgaacagtt gttcatttaa ctggaaaggc aatctgtttt tgggtagaat
     3661 acgcccattt tcccctcttt attttcaaaa ggaaatgtaa tgaaactttc aaaattagca
     3721 ttttctgtgg cgttggctct aaccgtaacg gcttgtacca cagggaatat gagcaatgac
     3781 gggactttgc aacaagcaca gcaaacctat caaagctatg atgaaattac caaacaatat
     3841 caaattaacg agcaatggtg gcaaggctat acggatgcgg aattaaaccg tgtggttgat
     3901 ttagccatca aaaataacct tgatttagcc aaaagcggaa ttgcagtcaa taaagccttg
     3961 tataacgcta atttagtagg ggcaaattta gtgccaacct ttagtggttc aggttctgtt
     4021 tctgcggcta aaggtttagg ttcggcttct tcaaataatg tttcgaccgg tgtttcaaca
     4081 accgcagctc aagctgcatt taatttaagt tatactgtgg atttatggcg acgtttagcc
     4141 gataccgcca gtgcggcaga atggacgcat aaagccacca ttgaagactt aaaagctacc
     4201 cgtttatcta ttattaatgc ggttgtgact acttactacc agttagctta ctatcgtgat
     4261 gcgattcgta ttaccgaaga gagcattcgc cattatgagc aaatcagccg tattttaact
     4321 aacaaaatga atgccggtgc gattgatagt ttagcggttg atcaggctca acaagcggtc
     4381 ttaaacgcca gaaatagtgt aattgatctg aaaaccaacc aaaaaattgc cgagcaaaca
     4441 ttacgcaatt tgttaaatgt tcagccaaat actccgctta acattcgtta cccgaatatt
     4501 atgagcgtga aattgcaagg ggtagattta aatgtgccag tgtcagccat tgctaatcgc
     4561 cctgatgtag taggctcgtt acaacgctta caaagtgcat ttaaaacctt aaccgcaacc
     4621 gagaaaagct ggttcccaac cttaaccatc ggtggttcta ttaccggtag tgcaaccaat
     4681 atcggcaatg tggcagataa ccctgtgggt aacggcttaa ttaaattgga tttaccgttc
     4741 ttagattgga atcgggttaa aaataacgta aaaatttctg aaacggatta tgtgactgcc
     4801 cgtttaaact atgagcaaaa aattacctca gccttaaatg aaattgaccg ttattattac
     4861 agttatacgc agtcgagaag ctcgttaaaa atccttcaag ataccaatgc gaaaaataaa
     4921 cgtatcagtt catactataa aaaccgttat gaacaagggg tgtcggagtt ccgtgagtgg
     4981 attaccgcac tgaataccga gcttaattct cagttggcga ttttaaatgc aaaatatgcg
     5041 attttgacca acgagaatgc ggtttaccaa gcaatggcag gtaaatacag aagataatta
     5101 tatctaaaac tatatactat gg
//
